2024-05-15 15:35:15 +00:00
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{
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lib,
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stdenv,
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fetchFromGitHub,
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fetchpatch,
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cmake,
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pkg-config,
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bzip2,
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libxml2,
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swig,
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}:
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stdenv.mkDerivation (attrs: {
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pname = "libsbml";
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version = "5.20.2";
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src = fetchFromGitHub {
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owner = "sbmlteam";
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repo = "libsbml";
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rev = "v${attrs.version}";
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hash = "sha256-8JT2r0zuf61VewtZaOAccaOUmDlQPnllA0fXE9rT5X8=";
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};
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patches = [
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# This should be in next release, remember to remove fetchpatch
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2024-06-20 14:57:18 +00:00
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(fetchpatch { # https://github.com/sbmlteam/libsbml/pull/358
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2024-05-15 15:35:15 +00:00
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name = "fix-xmlerror-conversion.patch";
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2024-06-20 14:57:18 +00:00
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url = "https://github.com/sbmlteam/libsbml/commit/de2f77ee6766fe933a1472200f5e08e7c5ba6f8c.patch";
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2024-05-15 15:35:15 +00:00
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hash = "sha256-uirG6XJ+w0hqBUEAGDnzhHoVtJVRdN1eqBYeneKMBao=";
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})
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];
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nativeBuildInputs = [
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cmake
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pkg-config
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swig
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];
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buildInputs = [
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bzip2.dev
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libxml2
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];
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# libSBML doesn't always make use of pkg-config
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cmakeFlags = [
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"-DLIBXML_INCLUDE_DIR=${lib.getDev libxml2}/include/libxml2"
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"-DLIBXML_LIBRARY=${lib.getLib libxml2}/lib/libxml2${stdenv.hostPlatform.extensions.sharedLibrary}"
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"-DPKG_CONFIG_EXECUTABLE=${lib.getBin pkg-config}/bin/pkg-config"
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"-DSWIG_EXECUTABLE=${lib.getBin swig}/bin/swig"
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];
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meta = with lib; {
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description = "Library for manipulating Systems Biology Markup Language (SBML)";
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homepage = "https://github.com/sbmlteam/libsbml";
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license = licenses.lgpl21Only;
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maintainers = [maintainers.kupac];
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platforms = platforms.all;
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};
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})
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