43 lines
1.1 KiB
Nix
43 lines
1.1 KiB
Nix
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{ lib
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, python
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}:
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with python.pkgs;
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buildPythonApplication rec {
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pname = "deepTools";
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version = "3.4.1";
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src = fetchPypi {
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inherit pname version;
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sha256 = "05zw9gk17hz08hns5lnhn7l13idg9jdz4gdba6m6gbr84yz149gs";
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};
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propagatedBuildInputs = [
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numpy
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numpydoc
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scipy
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py2bit
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pybigwig
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pysam
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matplotlib
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plotly
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deeptoolsintervals
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];
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checkInputs = [ pytest ];
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meta = with lib; {
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homepage = "https://deeptools.readthedocs.io/en/develop";
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description = "Tools for exploring deep DNA sequencing data";
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longDescription = ''
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deepTools contains useful modules to process the mapped reads data for multiple
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quality checks, creating normalized coverage files in standard bedGraph and bigWig
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file formats, that allow comparison between different files (for example, treatment and control).
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Finally, using such normalized and standardized files, deepTools can create many
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publication-ready visualizations to identify enrichments and for functional
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annotations of the genome.
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'';
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license = licenses.gpl3;
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maintainers = with maintainers; [ scalavision ];
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};
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}
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