2021-01-15 22:18:51 +00:00
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{ lib, stdenv, fetchurl, gcc, zlib, python27 }:
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2020-04-24 23:36:52 +00:00
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stdenv.mkDerivation rec {
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2021-12-06 16:07:01 +00:00
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pname = "ecopcr";
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version = "0.8.0";
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2020-04-24 23:36:52 +00:00
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src = fetchurl {
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2021-12-06 16:07:01 +00:00
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url = "https://git.metabarcoding.org/obitools/ecopcr/uploads/6f37991b325c8c171df7e79e6ae8d080/ecopcr-${version}.tar.gz";
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2020-04-24 23:36:52 +00:00
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sha256 = "10c58hj25z78jh0g3zcbx4890yd2qrvaaanyx8mn9p49mmyf5pk6";
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};
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sourceRoot = "ecoPCR/src";
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buildInputs = [ gcc python27 zlib ];
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installPhase = ''
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2021-02-05 17:12:51 +00:00
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mkdir -p $out/bin
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cp -v ecoPCR $out/bin
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cp -v ecogrep $out/bin
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cp -v ecofind $out/bin
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cp -v ../tools/ecoPCRFormat.py $out/bin/ecoPCRFormat
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chmod a+x $out/bin/ecoPCRFormat
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2020-04-24 23:36:52 +00:00
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'';
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2021-01-15 22:18:51 +00:00
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meta = with lib; {
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2020-04-24 23:36:52 +00:00
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description = "Electronic PCR software tool";
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longDescription = ''
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ecoPCR is an electronic PCR software developed by the LECA. It
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helps you estimate Barcode primers quality. In conjunction with
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OBITools, you can postprocess ecoPCR output to compute barcode
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coverage and barcode specificity. New barcode primers can be
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developed using the ecoPrimers software.
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'';
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homepage = "https://git.metabarcoding.org/obitools/ecopcr/wikis/home";
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license = licenses.cecill20;
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maintainers = [ maintainers.metabar ];
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};
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}
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