54 lines
1.4 KiB
Nix
54 lines
1.4 KiB
Nix
|
{ stdenv
|
||
|
|
, lib
|
||
|
|
, fetchurl
|
||
|
|
, unzip
|
||
|
|
, makeDesktopItem
|
||
|
|
, jre
|
||
|
|
}:
|
||
|
|
|
||
|
|
let
|
||
|
|
desktopItem = makeDesktopItem {
|
||
|
|
name = "jmol";
|
||
|
|
exec = "jmol";
|
||
|
|
desktopName = "JMol";
|
||
|
|
genericName = "Molecular Modeler";
|
||
|
|
mimeType = "chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;";
|
||
|
|
categories = "Graphics;Education;Science;Chemistry;";
|
||
|
|
};
|
||
|
|
in
|
||
|
|
stdenv.mkDerivation rec {
|
||
|
|
version = "14.30.2";
|
||
|
|
pname = "jmol";
|
||
|
|
|
||
|
|
src = let
|
||
|
|
baseVersion = "${lib.versions.major version}.${lib.versions.minor version}";
|
||
|
|
in fetchurl {
|
||
|
|
url = "mirror://sourceforge/jmol/Jmol/Version%20${baseVersion}/Jmol%20${version}/Jmol-${version}-binary.tar.gz";
|
||
|
|
sha256 = "0f9sxhxyqrd1vvmq566v1zpzzlci37pm9j7alzak766x5dg5yyz1";
|
||
|
|
};
|
||
|
|
|
||
|
|
patchPhase = ''
|
||
|
|
sed -i -e "4s:.*:command=${jre}/bin/java:" -e "10s:.*:jarpath=$out/share/jmol/Jmol.jar:" -e "11,21d" jmol
|
||
|
|
'';
|
||
|
|
|
||
|
|
installPhase = ''
|
||
|
|
mkdir -p "$out/share/jmol" "$out/bin"
|
||
|
|
|
||
|
|
${unzip}/bin/unzip jsmol.zip -d "$out/share/"
|
||
|
|
|
||
|
|
cp *.jar jmol.sh "$out/share/jmol"
|
||
|
|
cp -r ${desktopItem}/share/applications $out/share
|
||
|
|
cp jmol $out/bin
|
||
|
|
'';
|
||
|
|
|
||
|
|
enableParallelBuilding = true;
|
||
|
|
|
||
|
|
meta = with stdenv.lib; {
|
||
|
|
description = "A Java 3D viewer for chemical structures";
|
||
|
|
homepage = "https://sourceforge.net/projects/jmol";
|
||
|
|
license = licenses.lgpl2;
|
||
|
|
platforms = platforms.all;
|
||
|
|
maintainers = with maintainers; [ timokau mounium ];
|
||
|
|
};
|
||
|
|
}
|