2022-11-02 22:02:43 +00:00
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{ lib
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, stdenv
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, fetchFromGitHub
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, cmake
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, xxd
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, perl
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, installShellFiles
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, enableAvx2 ? stdenv.hostPlatform.avx2Support
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, enableSse4_1 ? stdenv.hostPlatform.sse4_1Support
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, enableMpi ? false
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, mpi
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, openmp
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, zlib
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, bzip2
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}:
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stdenv.mkDerivation rec {
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pname = "mmseqs2";
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2023-11-16 04:20:00 +00:00
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version = "15-6f452";
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2022-11-02 22:02:43 +00:00
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src = fetchFromGitHub {
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owner = "soedinglab";
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repo = pname;
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rev = version;
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2023-11-16 04:20:00 +00:00
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sha256 = "sha256-L+zOWrGkCLz/wqpBuji8H4/93sDFpcfnDOE8FHq1j84=";
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2022-11-02 22:02:43 +00:00
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};
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nativeBuildInputs = [ cmake xxd perl installShellFiles ];
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cmakeFlags =
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lib.optional enableAvx2 "-DHAVE_AVX2=1"
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++ lib.optional enableSse4_1 "-DHAVE_SSE4_1=1"
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++ lib.optional enableMpi "-DHAVE_MPI=1";
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buildInputs =
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lib.optionals stdenv.cc.isClang [ openmp zlib bzip2 ]
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++ lib.optional enableMpi mpi;
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postInstall = ''
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installShellCompletion --bash --cmd mmseqs $out/util/bash-completion.sh
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rm -r $out/util/
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'';
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meta = with lib; {
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description = "Ultra fast and sensitive sequence search and clustering suite";
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homepage = "https://mmseqs.com/";
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license = licenses.gpl3;
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maintainers = with maintainers; [ natsukium ];
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platforms = platforms.unix;
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};
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}
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