99 lines
1.8 KiB
Nix
99 lines
1.8 KiB
Nix
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{
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lib,
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bokeh,
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buildPythonPackage,
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colorcet,
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datashader,
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fetchFromGitHub,
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setuptools,
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holoviews,
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matplotlib,
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numba,
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numpy,
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pandas,
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pynndescent,
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pytestCheckHook,
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scikit-image,
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scikit-learn,
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scipy,
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seaborn,
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tensorflow,
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tensorflow-probability,
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tqdm,
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}:
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buildPythonPackage rec {
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pname = "umap-learn";
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version = "0.5.7";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "lmcinnes";
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repo = "umap";
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rev = "refs/tags/release-${version}";
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hash = "sha256-hPYmRDSeDa4JWGekUVq3CWf5NthHTpMpyuUQ1yIkVAE=";
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};
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build-system = [ setuptools ];
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dependencies = [
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numba
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numpy
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pynndescent
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scikit-learn
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scipy
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tqdm
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];
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optional-dependencies = rec {
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plot = [
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bokeh
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colorcet
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datashader
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holoviews
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matplotlib
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pandas
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scikit-image
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seaborn
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];
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parametric_umap = [
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tensorflow
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tensorflow-probability
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];
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tbb = [ tbb ];
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all = plot ++ parametric_umap ++ tbb;
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};
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nativeCheckInputs = [ pytestCheckHook ];
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preCheck = ''
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export HOME=$TMPDIR
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'';
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disabledTests = [
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# Plot functionality requires additional packages.
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# These test also fail with 'RuntimeError: cannot cache function' error.
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"test_plot_runs_at_all"
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"test_umap_plot_testability"
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"test_umap_update_large"
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# Flaky test. Fails with AssertionError sometimes.
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"test_sparse_hellinger"
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"test_densmap_trustworthiness_on_iris_supervised"
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# tensorflow maybe incompatible? https://github.com/lmcinnes/umap/issues/821
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"test_save_load"
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];
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meta = with lib; {
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description = "Uniform Manifold Approximation and Projection";
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homepage = "https://github.com/lmcinnes/umap";
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changelog = "https://github.com/lmcinnes/umap/releases/tag/release-${version}";
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license = licenses.bsd3;
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maintainers = [ ];
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};
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}
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