2024-01-02 11:29:13 +00:00
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{ lib, stdenv, fetchzip, jdk11, wrapGAppsHook }:
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2020-04-24 23:36:52 +00:00
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stdenv.mkDerivation rec {
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pname = "igv";
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2023-10-09 19:29:22 +00:00
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version = "2.16.2";
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2020-09-25 04:45:31 +00:00
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src = fetchzip {
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2022-08-12 12:06:08 +00:00
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url = "https://data.broadinstitute.org/igv/projects/downloads/${lib.versions.majorMinor version}/IGV_${version}.zip";
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2023-10-09 19:29:22 +00:00
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sha256 = "sha256-/X9loW8rOevf/GA/Wk3bVsES9ZceF79Bkwby75SJgTQ=";
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2020-04-24 23:36:52 +00:00
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};
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installPhase = ''
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mkdir -pv $out/{share,bin}
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cp -Rv * $out/share/
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sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
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2020-09-25 04:45:31 +00:00
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sed -i 's#java#${jdk11}/bin/java#g' $out/share/igv.sh
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sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools
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sed -i 's#java#${jdk11}/bin/java#g' $out/share/igvtools
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2020-04-24 23:36:52 +00:00
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ln -s $out/share/igv.sh $out/bin/igv
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2020-09-25 04:45:31 +00:00
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ln -s $out/share/igvtools $out/bin/igvtools
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2020-04-24 23:36:52 +00:00
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chmod +x $out/bin/igv
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2020-09-25 04:45:31 +00:00
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chmod +x $out/bin/igvtools
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2020-04-24 23:36:52 +00:00
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'';
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2024-01-02 11:29:13 +00:00
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nativeBuildInputs = [ wrapGAppsHook ];
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2020-04-24 23:36:52 +00:00
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2021-01-15 22:18:51 +00:00
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meta = with lib; {
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2020-04-24 23:36:52 +00:00
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homepage = "https://www.broadinstitute.org/igv/";
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description = "A visualization tool for interactive exploration of genomic datasets";
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2020-09-25 04:45:31 +00:00
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license = licenses.mit;
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2020-04-24 23:36:52 +00:00
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platforms = platforms.unix;
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maintainers = [ maintainers.mimame ];
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};
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}
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