2023-07-15 17:15:38 +00:00
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{ lib
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, stdenv
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, cmake
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, fetchFromGitHub
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, llvmPackages
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, enableSse4_1 ? stdenv.hostPlatform.sse4_1Support
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, enableAvx ? stdenv.hostPlatform.avxSupport
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, enableAvx2 ? stdenv.hostPlatform.avx2Support
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "kalign";
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2024-01-02 11:29:13 +00:00
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version = "3.4.0";
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2023-07-15 17:15:38 +00:00
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src = fetchFromGitHub {
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owner = "TimoLassmann";
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repo = "kalign";
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rev = "refs/tags/v${finalAttrs.version}";
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2024-01-02 11:29:13 +00:00
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hash = "sha256-QcFNaCTqj6CFiOzQ6ezfBL0mu8PDU11hyNdkcsLOPzA=";
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2023-07-15 17:15:38 +00:00
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};
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nativeBuildInputs = [
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cmake
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];
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buildInputs = lib.optionals stdenv.cc.isClang [
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llvmPackages.openmp
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];
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cmakeFlags =
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# these flags are ON by default
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lib.optional (!enableSse4_1) "-DENABLE_SSE=OFF"
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++ lib.optional (!enableAvx) "-DENABLE_AVX=OFF"
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++ lib.optional (!enableAvx2) "-DENABLE_AVX2=OFF";
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doCheck = true;
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meta = {
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description = "A fast multiple sequence alignment program";
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homepage = "https://github.com/TimoLassmann/kalign";
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changelog = "https://github.com/TimoLassmann/kalign/releases/tag/${finalAttrs.src.rev}";
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license = lib.licenses.gpl3Plus;
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maintainers = with lib.maintainers; [ natsukium ];
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platforms = lib.platforms.unix;
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};
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})
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