2023-02-09 11:40:11 +00:00
|
|
|
# Configurations that should only be overrided by
|
|
|
|
# overrideAttrs
|
|
|
|
{ pname
|
|
|
|
, version
|
|
|
|
, src
|
|
|
|
, projectName # "apptainer" or "singularity"
|
|
|
|
, vendorHash ? null
|
|
|
|
, deleteVendor ? false
|
|
|
|
, proxyVendor ? false
|
|
|
|
, extraConfigureFlags ? [ ]
|
|
|
|
, extraDescription ? ""
|
|
|
|
, extraMeta ? { }
|
|
|
|
}:
|
|
|
|
|
|
|
|
let
|
|
|
|
# Workaround for vendor-related attributes not overridable (#86349)
|
|
|
|
# should be removed when the issue is resolved
|
|
|
|
_defaultGoVendorArgs = {
|
|
|
|
inherit
|
|
|
|
vendorHash
|
|
|
|
deleteVendor
|
|
|
|
proxyVendor
|
|
|
|
;
|
|
|
|
};
|
|
|
|
in
|
|
|
|
{ lib
|
|
|
|
, buildGoModule
|
|
|
|
, runCommandLocal
|
|
|
|
# Native build inputs
|
2024-01-13 08:15:51 +00:00
|
|
|
, addDriverRunpath
|
2023-02-09 11:40:11 +00:00
|
|
|
, makeWrapper
|
|
|
|
, pkg-config
|
|
|
|
, util-linux
|
|
|
|
, which
|
|
|
|
# Build inputs
|
|
|
|
, bash
|
2024-01-13 08:15:51 +00:00
|
|
|
, callPackage
|
2023-02-09 11:40:11 +00:00
|
|
|
, conmon
|
|
|
|
, coreutils
|
|
|
|
, cryptsetup
|
2023-04-29 16:46:19 +00:00
|
|
|
, e2fsprogs
|
2023-02-09 11:40:11 +00:00
|
|
|
, fakeroot
|
2023-04-29 16:46:19 +00:00
|
|
|
, fuse2fs ? e2fsprogs.fuse2fs
|
2023-02-09 11:40:11 +00:00
|
|
|
, go
|
|
|
|
, gpgme
|
|
|
|
, libseccomp
|
|
|
|
, libuuid
|
|
|
|
# This is for nvidia-container-cli
|
|
|
|
, nvidia-docker
|
|
|
|
, openssl
|
|
|
|
, squashfsTools
|
|
|
|
, squashfuse
|
2023-04-29 16:46:19 +00:00
|
|
|
# Test dependencies
|
|
|
|
, singularity-tools
|
|
|
|
, cowsay
|
|
|
|
, hello
|
2023-02-09 11:40:11 +00:00
|
|
|
# Overridable configurations
|
|
|
|
, enableNvidiaContainerCli ? true
|
2024-01-13 08:15:51 +00:00
|
|
|
# --nvccli currently requires extra privileges:
|
|
|
|
# https://github.com/apptainer/apptainer/issues/1893#issuecomment-1881240800
|
|
|
|
, forceNvcCli ? false
|
2023-02-09 11:40:11 +00:00
|
|
|
# Compile with seccomp support
|
|
|
|
# SingularityCE 3.10.0 and above requires explicit --without-seccomp when libseccomp is not available.
|
|
|
|
, enableSeccomp ? true
|
|
|
|
# Whether the configure script treat SUID support as default
|
2023-02-22 10:55:15 +00:00
|
|
|
# When equal to enableSuid, it supress the --with-suid / --without-suid build flag
|
|
|
|
# It can be set to `null` to always pass either --with-suid or --without-suided
|
|
|
|
# Type: null or boolean
|
2023-02-09 11:40:11 +00:00
|
|
|
, defaultToSuid ? true
|
|
|
|
# Whether to compile with SUID support
|
|
|
|
, enableSuid ? false
|
|
|
|
, starterSuidPath ? null
|
2024-01-13 08:15:51 +00:00
|
|
|
, substituteAll
|
2023-02-09 11:40:11 +00:00
|
|
|
# newuidmapPath and newgidmapPath are to support --fakeroot
|
|
|
|
# where those SUID-ed executables are unavailable from the FHS system PATH.
|
|
|
|
# Path to SUID-ed newuidmap executable
|
|
|
|
, newuidmapPath ? null
|
|
|
|
# Path to SUID-ed newgidmap executable
|
|
|
|
, newgidmapPath ? null
|
2024-01-02 11:29:13 +00:00
|
|
|
# External LOCALSTATEDIR
|
|
|
|
, externalLocalStateDir ? null
|
2023-02-09 11:40:11 +00:00
|
|
|
# Remove the symlinks to `singularity*` when projectName != "singularity"
|
|
|
|
, removeCompat ? false
|
|
|
|
# Workaround #86349
|
|
|
|
# should be removed when the issue is resolved
|
|
|
|
, vendorHash ? _defaultGoVendorArgs.vendorHash
|
|
|
|
, deleteVendor ? _defaultGoVendorArgs.deleteVendor
|
|
|
|
, proxyVendor ? _defaultGoVendorArgs.proxyVendor
|
|
|
|
}:
|
|
|
|
|
|
|
|
let
|
|
|
|
defaultPathOriginal = "/bin:/usr/bin:/sbin:/usr/sbin:/usr/local/bin:/usr/local/sbin";
|
2023-03-24 00:07:29 +00:00
|
|
|
privileged-un-utils = if ((newuidmapPath == null) && (newgidmapPath == null)) then null else
|
2023-02-09 11:40:11 +00:00
|
|
|
(runCommandLocal "privileged-un-utils" { } ''
|
|
|
|
mkdir -p "$out/bin"
|
|
|
|
ln -s ${lib.escapeShellArg newuidmapPath} "$out/bin/newuidmap"
|
|
|
|
ln -s ${lib.escapeShellArg newgidmapPath} "$out/bin/newgidmap"
|
|
|
|
'');
|
|
|
|
in
|
2023-04-29 16:46:19 +00:00
|
|
|
(buildGoModule {
|
2023-02-09 11:40:11 +00:00
|
|
|
inherit pname version src;
|
|
|
|
|
2024-01-13 08:15:51 +00:00
|
|
|
patches = lib.optionals (projectName == "apptainer") [
|
|
|
|
(substituteAll { src = ./apptainer/0001-ldCache-patch-for-driverLink.patch; inherit (addDriverRunpath) driverLink; })
|
|
|
|
];
|
|
|
|
|
2023-02-09 11:40:11 +00:00
|
|
|
# Override vendorHash with the output got from
|
2023-08-04 22:07:22 +00:00
|
|
|
# nix-prefetch -E "{ sha256 }: ((import ./. { }).apptainer.override { vendorHash = sha256; }).goModules"
|
2023-02-09 11:40:11 +00:00
|
|
|
# or with `null` when using vendored source tarball.
|
|
|
|
inherit vendorHash deleteVendor proxyVendor;
|
|
|
|
|
|
|
|
# go is used to compile extensions when building container images
|
|
|
|
allowGoReference = true;
|
|
|
|
|
|
|
|
strictDeps = true;
|
|
|
|
|
|
|
|
passthru = {
|
|
|
|
inherit
|
|
|
|
enableSeccomp
|
|
|
|
enableSuid
|
2024-01-02 11:29:13 +00:00
|
|
|
externalLocalStateDir
|
2023-02-09 11:40:11 +00:00
|
|
|
projectName
|
|
|
|
removeCompat
|
|
|
|
starterSuidPath
|
|
|
|
;
|
|
|
|
};
|
|
|
|
|
|
|
|
nativeBuildInputs = [
|
|
|
|
makeWrapper
|
|
|
|
pkg-config
|
|
|
|
util-linux
|
|
|
|
which
|
|
|
|
];
|
|
|
|
|
2023-04-29 16:46:19 +00:00
|
|
|
# Search inside the project sources
|
|
|
|
# and see the `control` file of the Debian package from upstream repos
|
|
|
|
# for build-time dependencies and run-time utilities
|
|
|
|
# apptainer/apptainer: https://github.com/apptainer/apptainer/blob/main/dist/debian/control
|
|
|
|
# sylabs/singularity: https://github.com/sylabs/singularity/blob/main/debian/control
|
|
|
|
|
2023-02-09 11:40:11 +00:00
|
|
|
buildInputs = [
|
|
|
|
bash # To patch /bin/sh shebangs.
|
|
|
|
conmon
|
|
|
|
cryptsetup
|
|
|
|
gpgme
|
|
|
|
libuuid
|
|
|
|
openssl
|
2023-04-29 16:46:19 +00:00
|
|
|
squashfsTools # Required at build time by SingularityCE
|
2023-02-09 11:40:11 +00:00
|
|
|
]
|
|
|
|
++ lib.optional enableNvidiaContainerCli nvidia-docker
|
|
|
|
++ lib.optional enableSeccomp libseccomp
|
|
|
|
;
|
|
|
|
|
|
|
|
configureScript = "./mconfig";
|
|
|
|
|
|
|
|
configureFlags = [
|
2024-01-02 11:29:13 +00:00
|
|
|
"--localstatedir=${if externalLocalStateDir != null then externalLocalStateDir else "${placeholder "out"}/var/lib"}"
|
2023-02-09 11:40:11 +00:00
|
|
|
"--runstatedir=/var/run"
|
|
|
|
]
|
|
|
|
++ lib.optional (!enableSeccomp) "--without-seccomp"
|
2023-02-22 10:55:15 +00:00
|
|
|
++ lib.optional (enableSuid != defaultToSuid) (if enableSuid then "--with-suid" else "--without-suid")
|
2023-02-09 11:40:11 +00:00
|
|
|
++ extraConfigureFlags
|
|
|
|
;
|
|
|
|
|
2023-07-15 17:15:38 +00:00
|
|
|
# causes redefinition of _FORTIFY_SOURCE
|
|
|
|
hardeningDisable = [ "fortify3" ];
|
|
|
|
|
2023-02-09 11:40:11 +00:00
|
|
|
# Packages to prefix to the Apptainer/Singularity container runtime default PATH
|
|
|
|
# Use overrideAttrs to override
|
|
|
|
defaultPathInputs = [
|
|
|
|
bash
|
|
|
|
coreutils
|
|
|
|
cryptsetup # cryptsetup
|
2023-04-29 16:46:19 +00:00
|
|
|
fakeroot
|
|
|
|
fuse2fs # Mount ext3 filesystems
|
2023-02-09 11:40:11 +00:00
|
|
|
go
|
|
|
|
privileged-un-utils
|
|
|
|
squashfsTools # mksquashfs unsquashfs # Make / unpack squashfs image
|
|
|
|
squashfuse # squashfuse_ll squashfuse # Mount (without unpacking) a squashfs image without privileges
|
|
|
|
]
|
|
|
|
++ lib.optional enableNvidiaContainerCli nvidia-docker
|
|
|
|
;
|
|
|
|
|
|
|
|
postPatch = ''
|
|
|
|
if [[ ! -e .git || ! -e VERSION ]]; then
|
|
|
|
echo "${version}" > VERSION
|
|
|
|
fi
|
2024-01-13 08:15:51 +00:00
|
|
|
|
2023-02-09 11:40:11 +00:00
|
|
|
# Patch shebangs for script run during build
|
|
|
|
patchShebangs --build "$configureScript" makeit e2e scripts mlocal/scripts
|
2024-01-13 08:15:51 +00:00
|
|
|
|
2023-02-09 11:40:11 +00:00
|
|
|
# Patching the hard-coded defaultPath by prefixing the packages in defaultPathInputs
|
|
|
|
substituteInPlace cmd/internal/cli/actions.go \
|
|
|
|
--replace "defaultPath = \"${defaultPathOriginal}\"" "defaultPath = \"''${defaultPathInputs// /\/bin:}''${defaultPathInputs:+/bin:}${defaultPathOriginal}\""
|
2024-01-13 08:15:51 +00:00
|
|
|
|
|
|
|
substituteInPlace internal/pkg/util/gpu/nvidia.go \
|
|
|
|
--replace \
|
|
|
|
'return fmt.Errorf("/usr/bin not writable in the container")' \
|
|
|
|
""
|
2023-02-09 11:40:11 +00:00
|
|
|
'';
|
|
|
|
|
|
|
|
postConfigure = ''
|
|
|
|
# Code borrowed from pkgs/stdenv/generic/setup.sh configurePhase()
|
|
|
|
|
|
|
|
# set to empty if unset
|
|
|
|
: ''${configureFlags=}
|
|
|
|
|
|
|
|
# shellcheck disable=SC2086
|
|
|
|
$configureScript -V ${version} "''${prefixKey:---prefix=}$prefix" $configureFlags "''${configureFlagsArray[@]}"
|
|
|
|
|
|
|
|
# End of the code from pkgs/stdenv/generic/setup.sh configurPhase()
|
|
|
|
'';
|
|
|
|
|
|
|
|
buildPhase = ''
|
|
|
|
runHook preBuild
|
|
|
|
make -C builddir -j"$NIX_BUILD_CORES"
|
|
|
|
runHook postBuild
|
|
|
|
'';
|
|
|
|
|
|
|
|
installPhase = ''
|
|
|
|
runHook preInstall
|
|
|
|
make -C builddir install LOCALSTATEDIR="$out/var/lib"
|
|
|
|
runHook postInstall
|
|
|
|
'';
|
|
|
|
|
|
|
|
postFixup = ''
|
|
|
|
substituteInPlace "$out/bin/run-singularity" \
|
|
|
|
--replace "/usr/bin/env ${projectName}" "$out/bin/${projectName}"
|
|
|
|
wrapProgram "$out/bin/${projectName}" \
|
2023-10-09 19:29:22 +00:00
|
|
|
--prefix PATH : "''${defaultPathInputs// /\/bin:}''${defaultPathInputs:+/bin:}"
|
2023-02-09 11:40:11 +00:00
|
|
|
# Make changes in the config file
|
2024-01-13 08:15:51 +00:00
|
|
|
${lib.optionalString forceNvcCli ''
|
2023-02-09 11:40:11 +00:00
|
|
|
substituteInPlace "$out/etc/${projectName}/${projectName}.conf" \
|
|
|
|
--replace "use nvidia-container-cli = no" "use nvidia-container-cli = yes"
|
|
|
|
''}
|
2023-10-09 19:29:22 +00:00
|
|
|
${lib.optionalString (enableNvidiaContainerCli && projectName == "singularity") ''
|
|
|
|
substituteInPlace "$out/etc/${projectName}/${projectName}.conf" \
|
|
|
|
--replace "# nvidia-container-cli path =" "nvidia-container-cli path = ${nvidia-docker}/bin/nvidia-container-cli"
|
|
|
|
''}
|
2023-02-09 11:40:11 +00:00
|
|
|
${lib.optionalString (removeCompat && (projectName != "singularity")) ''
|
|
|
|
unlink "$out/bin/singularity"
|
|
|
|
for file in "$out"/share/man/man?/singularity*.gz; do
|
|
|
|
if [[ -L "$file" ]]; then
|
|
|
|
unlink "$file"
|
|
|
|
fi
|
|
|
|
done
|
|
|
|
for file in "$out"/share/*-completion/completions/singularity; do
|
|
|
|
if [[ -e "$file" ]]
|
|
|
|
rm "$file"
|
|
|
|
done
|
|
|
|
''}
|
2023-03-24 00:07:29 +00:00
|
|
|
${lib.optionalString enableSuid (lib.warnIf (starterSuidPath == null) "${projectName}: Null starterSuidPath when enableSuid produces non-SUID-ed starter-suid and run-time permission denial." ''
|
2023-02-09 11:40:11 +00:00
|
|
|
chmod +x $out/libexec/${projectName}/bin/starter-suid
|
|
|
|
'')}
|
2023-03-24 00:07:29 +00:00
|
|
|
${lib.optionalString (enableSuid && (starterSuidPath != null)) ''
|
2023-02-09 11:40:11 +00:00
|
|
|
mv "$out"/libexec/${projectName}/bin/starter-suid{,.orig}
|
|
|
|
ln -s ${lib.escapeShellArg starterSuidPath} "$out/libexec/${projectName}/bin/starter-suid"
|
|
|
|
''}
|
|
|
|
'';
|
|
|
|
|
|
|
|
meta = with lib; {
|
|
|
|
description = "Application containers for linux" + extraDescription;
|
|
|
|
longDescription = ''
|
|
|
|
Singularity (the upstream) renamed themselves to Apptainer
|
|
|
|
to distinguish themselves from a fork made by Sylabs Inc.. See
|
|
|
|
|
|
|
|
https://sylabs.io/2021/05/singularity-community-edition
|
|
|
|
https://apptainer.org/news/community-announcement-20211130
|
|
|
|
'';
|
|
|
|
license = licenses.bsd3;
|
|
|
|
platforms = platforms.linux;
|
|
|
|
maintainers = with maintainers; [ jbedo ShamrockLee ];
|
|
|
|
mainProgram = projectName;
|
|
|
|
} // extraMeta;
|
2023-04-29 16:46:19 +00:00
|
|
|
}).overrideAttrs (finalAttrs: prevAttrs: {
|
|
|
|
passthru = prevAttrs.passthru or { } // {
|
|
|
|
tests = {
|
|
|
|
image-hello-cowsay = singularity-tools.buildImage {
|
|
|
|
name = "hello-cowsay";
|
|
|
|
contents = [ hello cowsay ];
|
|
|
|
singularity = finalAttrs.finalPackage;
|
|
|
|
};
|
|
|
|
};
|
2024-01-13 08:15:51 +00:00
|
|
|
gpuChecks = lib.optionalAttrs (projectName == "apptainer") {
|
|
|
|
# Should be in tests, but Ofborg would skip image-hello-cowsay because
|
|
|
|
# saxpy is unfree.
|
|
|
|
image-saxpy = callPackage
|
|
|
|
({ singularity-tools, cudaPackages }:
|
|
|
|
singularity-tools.buildImage {
|
|
|
|
name = "saxpy";
|
|
|
|
contents = [ cudaPackages.saxpy ];
|
|
|
|
memSize = 2048;
|
|
|
|
diskSize = 2048;
|
|
|
|
singularity = finalAttrs.finalPackage;
|
|
|
|
})
|
|
|
|
{ };
|
|
|
|
saxpy =
|
|
|
|
callPackage
|
|
|
|
({ runCommand, writeShellScriptBin }:
|
|
|
|
let
|
|
|
|
unwrapped = writeShellScriptBin "apptainer-cuda-saxpy"
|
|
|
|
''
|
2024-04-21 15:54:59 +00:00
|
|
|
${lib.getExe finalAttrs.finalPackage} exec --nv $@ ${finalAttrs.passthru.gpuChecks.image-saxpy} saxpy
|
2024-01-13 08:15:51 +00:00
|
|
|
'';
|
|
|
|
in
|
|
|
|
runCommand "run-apptainer-cuda-saxpy"
|
|
|
|
{
|
|
|
|
requiredSystemFeatures = [ "cuda" ];
|
|
|
|
nativeBuildInputs = [ unwrapped ];
|
|
|
|
passthru = { inherit unwrapped; };
|
|
|
|
}
|
|
|
|
''
|
|
|
|
apptainer-cuda-saxpy
|
|
|
|
'')
|
|
|
|
{ };
|
|
|
|
};
|
2023-04-29 16:46:19 +00:00
|
|
|
};
|
|
|
|
})
|