58 lines
1 KiB
Nix
58 lines
1 KiB
Nix
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{
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stdenv,
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lib,
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fetchFromGitHub,
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cmake,
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python3,
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bison,
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flex,
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libxml2,
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openjdk,
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ncbi-vdb,
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mbedtls,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "sratoolkit";
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# NOTE: When updating make sure to update ncbi-vdb as well for versions to match
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version = "3.1.1";
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src = fetchFromGitHub {
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owner = "ncbi";
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repo = "sra-tools";
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rev = "refs/tags/${finalAttrs.version}";
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hash = "sha256-WVPiAz3EFYuhBnl7BsEjJ2BTi1wAownEunVM4sdLaj8=";
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};
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cmakeFlags = [
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"-DVDB_INCDIR=${ncbi-vdb}/include"
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"-DVDB_LIBDIR=${ncbi-vdb}/lib"
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];
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buildInputs = [
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ncbi-vdb
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libxml2
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mbedtls
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];
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nativeBuildInputs = [
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cmake
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python3
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bison
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flex
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openjdk
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];
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meta = {
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homepage = "https://github.com/ncbi/sra-tools";
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description = "Collection of tools and libraries for using data in the INSDC Sequence Read Archives";
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license = lib.licenses.ncbiPd;
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maintainers = with lib.maintainers; [
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thyol
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t4ccer
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];
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platforms = lib.platforms.unix;
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};
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})
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