102 lines
1.9 KiB
Nix
102 lines
1.9 KiB
Nix
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{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, hatch-vcs
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, hatchling
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, pytestCheckHook
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, attrs
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, importlib-resources
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, jinja2
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, looseversion
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, matplotlib
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, nibabel
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, nilearn
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, nipype
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, nitransforms
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, numpy
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, packaging
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, pandas
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, pybids
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, pyyaml
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, scikit-image
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, scipy
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, seaborn
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, svgutils
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, templateflow
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, traits
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, transforms3d
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}:
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buildPythonPackage rec {
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pname = "niworkflows";
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version = "1.10.0";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "nipreps";
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repo = "niworkflows";
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rev = "refs/tags/${version}";
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hash = "sha256-wQPk9imDvomg+NTWk+VeW1TE2QlvMyi1YYVVaznhktU=";
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};
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postPatch = ''
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substituteInPlace pyproject.toml --replace '"traits < 6.4"' '"traits"'
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'';
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nativeBuildInputs = [
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hatch-vcs
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hatchling
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];
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propagatedBuildInputs = [
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attrs
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importlib-resources
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jinja2
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looseversion
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matplotlib
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nibabel
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nilearn
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nipype
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nitransforms
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numpy
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packaging
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pandas
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pybids
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pyyaml
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scikit-image
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scipy
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seaborn
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svgutils
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templateflow
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traits
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transforms3d
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];
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env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
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nativeCheckInputs = [ pytestCheckHook ];
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preCheck = ''export HOME=$(mktemp -d)'';
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pytestFlagsArray = [ "niworkflows" ];
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# try to download data:
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disabledTests = [
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"test_GenerateCifti"
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"ROIsPlot"
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"ROIsPlot2"
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"test_SimpleShowMaskRPT"
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"test_cifti_surfaces_plot"
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"niworkflows.utils.misc.get_template_specs"
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"niworkflows.interfaces.cifti._prepare_cifti"
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];
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disabledTestPaths = [ "niworkflows/tests/test_registration.py" ];
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pythonImportsCheck = [ "niworkflows" ];
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meta = with lib; {
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description = "Common workflows for MRI (anatomical, functional, diffusion, etc.)";
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homepage = "https://github.com/nipreps/niworkflows";
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changelog = "https://github.com/nipreps/niworkflows/blob/${src.rev}/CHANGES.rst";
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license = licenses.asl20;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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