depot/third_party/nixpkgs/pkgs/applications/science/biology/blast/bin.nix

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{ lib
, stdenv
, fetchurl
, python3
, perl
, blast
, autoPatchelfHook
, zlib
, bzip2
, glib
, libxml2
, coreutils
}:
let
pname = "blast-bin";
version = "2.14.1";
srcs = rec {
x86_64-linux = fetchurl {
url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-linux.tar.gz";
hash = "sha256-OO8MNOk6k0J9FlAGyCOhP+hirEIT6lL+rIInB8dQWEU=";
};
aarch64-linux = fetchurl {
url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-aarch64-linux.tar.gz";
hash = "sha256-JlOyoxZQBbvUcHIMv5muTuGQgrh2uom3rzDurhHQ+FM=";
};
x86_64-darwin = fetchurl {
url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-macosx.tar.gz";
hash = "sha256-eMfuwMCD6VlDgeshLslDhYBBp0YOpL+6q/zSchR0bAs=";
};
aarch64-darwin = x86_64-darwin;
};
src = srcs.${stdenv.hostPlatform.system};
in
stdenv.mkDerivation {
inherit pname version src;
nativeBuildInputs = lib.optionals stdenv.hostPlatform.isLinux [ autoPatchelfHook ];
buildInputs = [ python3 perl ] ++ lib.optionals stdenv.hostPlatform.isLinux [ zlib bzip2 glib libxml2 ];
installPhase = ''
runHook preInstall
install -Dm755 bin/* -t $out/bin
runHook postInstall
'';
preFixup = ''
substituteInPlace $out/bin/get_species_taxids.sh \
--replace /bin/rm ${coreutils}/bin/rm
'';
meta = with lib; {
inherit (blast.meta) description homepage license;
platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" "aarch64-darwin" ];
sourceProvenance = with sourceTypes; [ binaryNativeCode ];
maintainers = with maintainers; [ natsukium ];
};
}