2023-04-12 12:48:02 +00:00
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{ lib
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, stdenv
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, fetchurl
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, python3
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, perl
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, blast
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, autoPatchelfHook
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, zlib
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, bzip2
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, glib
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, libxml2
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, coreutils
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}:
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let
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pname = "blast-bin";
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version = "2.13.0";
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srcs = rec {
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x86_64-linux = fetchurl {
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url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-linux.tar.gz";
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hash = "sha256-QPK3OdT++GoNI1NHyEpu2/hB2hqHYPQ/vNXFAVCwVEc=";
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};
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aarch64-linux = fetchurl {
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url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-arm-linux.tar.gz";
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hash = "sha256-vY8K66k7KunpBUjFsJTTb+ur5n1XmU0/mYxhZsi9ycs=";
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};
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x86_64-darwin = fetchurl {
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url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-macosx.tar.gz";
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hash = "sha256-Y0JlOUl9Ego6LTxTCNny3P5c1H3fApPXQm7Z6Zhq9RA=";
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};
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aarch64-darwin = x86_64-darwin;
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};
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src = srcs.${stdenv.hostPlatform.system};
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in
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stdenv.mkDerivation {
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inherit pname version src;
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2023-04-29 16:46:19 +00:00
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nativeBuildInputs = lib.optionals stdenv.isLinux [ autoPatchelfHook ];
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2023-04-12 12:48:02 +00:00
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buildInputs = [ python3 perl ] ++ lib.optionals stdenv.isLinux [ zlib bzip2 glib libxml2 ];
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installPhase = ''
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runHook preInstall
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install -Dm755 bin/* -t $out/bin
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runHook postInstall
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'';
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preFixup = ''
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substituteInPlace $out/bin/get_species_taxids.sh \
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--replace /bin/rm ${coreutils}/bin/rm
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'';
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meta = with lib; {
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inherit (blast.meta) description homepage license;
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platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" "aarch64-darwin" ];
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maintainers = with maintainers; [ natsukium ];
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};
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}
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