108 lines
2.2 KiB
Nix
108 lines
2.2 KiB
Nix
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{
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lib,
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arviz,
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blackjax,
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buildPythonPackage,
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fetchFromGitHub,
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formulae,
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graphviz,
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numpyro,
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pandas,
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pymc,
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pytestCheckHook,
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pythonOlder,
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setuptools-scm,
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}:
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buildPythonPackage rec {
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pname = "bambi";
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version = "0.14.0";
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pyproject = true;
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disabled = pythonOlder "3.10";
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src = fetchFromGitHub {
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owner = "bambinos";
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repo = "bambi";
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rev = "refs/tags/${version}";
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hash = "sha256-kxrNNbZfC96/XHb1I7aUHYZdFJvGR80ZI8ell/0FQXc=";
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};
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build-system = [ setuptools-scm ];
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dependencies = [
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arviz
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formulae
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graphviz
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pandas
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pymc
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];
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# bayeux-ml is not available in nixpkgs
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# optional-dependencies = {
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# jax = [ bayeux-ml ];
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# };
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nativeCheckInputs = [
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blackjax
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numpyro
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pytestCheckHook
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];
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preCheck = ''
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export HOME=$(mktemp -d)
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'';
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disabledTests = [
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# Tests require network access
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"test_alias_equal_to_name"
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"test_average_by"
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"test_ax"
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"test_basic"
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"test_censored_response"
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"test_custom_prior"
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"test_data_is_copied"
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"test_distributional_model"
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"test_elasticity"
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"test_extra_namespace"
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"test_fig_kwargs"
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"test_gamma_with_splines"
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"test_group_effects"
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"test_hdi_prob"
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"test_legend"
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"test_model_with_group_specific_effects"
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"test_model_with_intercept"
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"test_model_without_intercept"
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"test_non_distributional_model"
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"test_normal_with_splines"
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"test_predict_new_groups_fail"
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"test_predict_new_groups"
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"test_predict_offset"
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"test_set_alias_warnings"
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"test_subplot_kwargs"
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"test_transforms"
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"test_use_hdi"
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"test_with_group_and_panel"
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"test_with_groups"
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"test_with_user_values"
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];
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disabledTestPaths = [
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# bayeux-ml is not available
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"tests/test_alternative_samplers.py"
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# Tests require network access
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"tests/test_interpret.py"
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"tests/test_interpret_messages.py"
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];
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pythonImportsCheck = [ "bambi" ];
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meta = with lib; {
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description = "High-level Bayesian model-building interface";
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homepage = "https://bambinos.github.io/bambi";
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changelog = "https://github.com/bambinos/bambi/releases/tag/${version}";
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license = licenses.mit;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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