110 lines
2.2 KiB
Nix
110 lines
2.2 KiB
Nix
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{
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lib,
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fetchPypi,
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buildPythonPackage,
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pythonOlder,
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blosc2,
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bzip2,
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c-blosc,
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cython,
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hdf5,
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lzo,
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numpy,
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numexpr,
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packaging,
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setuptools,
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sphinx,
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typing-extensions,
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# Test inputs
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python,
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pytest,
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py-cpuinfo,
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}:
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buildPythonPackage rec {
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pname = "tables";
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version = "3.10.1";
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format = "setuptools";
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disabled = pythonOlder "3.8";
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-SqB6xzS5wDe66vRK7GTskCrSR/V4EbWfMMTjHTHxJs8=";
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};
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build-system = [
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blosc2
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cython
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setuptools
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sphinx
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];
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buildInputs = [
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bzip2
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c-blosc
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blosc2.c-blosc2
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hdf5
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lzo
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];
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dependencies = [
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blosc2
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py-cpuinfo
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numpy
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numexpr
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packaging # uses packaging.version at runtime
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typing-extensions
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];
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# When doing `make distclean`, ignore docs
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postPatch = ''
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substituteInPlace Makefile --replace "src doc" "src"
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# Force test suite to error when unittest runner fails
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substituteInPlace tables/tests/test_suite.py \
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--replace "return 0" "assert result.wasSuccessful(); return 0" \
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--replace "return 1" "assert result.wasSuccessful(); return 1"
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substituteInPlace requirements.txt \
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--replace "cython>=0.29.21" "" \
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--replace "blosc2~=2.0.0" "blosc2"
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'';
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# Regenerate C code with Cython
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preBuild = ''
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make distclean
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'';
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setupPyBuildFlags = [
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"--hdf5=${lib.getDev hdf5}"
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"--lzo=${lib.getDev lzo}"
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"--bzip2=${lib.getDev bzip2}"
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"--blosc=${lib.getDev c-blosc}"
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"--blosc2=${lib.getDev blosc2.c-blosc2}"
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];
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nativeCheckInputs = [ pytest ];
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preCheck = ''
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export HOME=$(mktemp -d)
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cd ..
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'';
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# Runs the light (yet comprehensive) subset of the test suite.
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# The whole "heavy" test suite supposedly takes ~4 hours to run.
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checkPhase = ''
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runHook preCheck
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${python.interpreter} -m tables.tests.test_all
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runHook postCheck
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'';
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pythonImportsCheck = [ "tables" ];
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meta = with lib; {
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description = "Hierarchical datasets for Python";
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homepage = "https://www.pytables.org/";
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changelog = "https://github.com/PyTables/PyTables/releases/tag/v${version}";
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license = licenses.bsd2;
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maintainers = with maintainers; [ drewrisinger ];
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};
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}
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