depot/third_party/nixpkgs/pkgs/development/libraries/itk/generic.nix

{ version, rev, sourceSha256 }:

{ lib, stdenv, fetchFromGitHub, cmake, makeWrapper
, pkg-config, libX11, libuuid, xz, vtk, Cocoa }:

let
  itkGenericLabelInterpolatorSrc = fetchFromGitHub {
    owner = "InsightSoftwareConsortium";
    repo = "ITKGenericLabelInterpolator";
    rev = "2f3768110ffe160c00c533a1450a49a16f4452d9";
    hash = "sha256-Cm3jg14MMnbr/sP+gqR2Rh25xJjoRvpmY/jP/DKH978=";
  };

  itkAdaptiveDenoisingSrc = fetchFromGitHub {
    owner = "ntustison";
    repo = "ITKAdaptiveDenoising";
    rev = "24825c8d246e941334f47968553f0ae388851f0c";
    hash = "sha256-deJbza36c0Ohf9oKpO2T4po37pkyI+2wCSeGL4r17Go=";
  };

  itkSimpleITKFiltersSrc = fetchFromGitHub {
    owner = "InsightSoftwareConsortium";
    repo = "ITKSimpleITKFilters";
    rev = "bb896868fc6480835495d0da4356d5db009592a6";
    hash = "sha256-MfaIA0xxA/pzUBSwnAevr17iR23Bo5iQO2cSyknS3o4=";
  };
in

stdenv.mkDerivation {
  pname = "itk";
  inherit version;

  src = fetchFromGitHub {
    owner = "InsightSoftwareConsortium";
    repo = "ITK";
    inherit rev;
    sha256 = sourceSha256;
  };

  postPatch = ''
    substituteInPlace CMake/ITKSetStandardCompilerFlags.cmake  \
      --replace "-march=corei7" ""  \
      --replace "-mtune=native" ""
    substituteInPlace Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg/src/lib/openjp2/libopenjp2.pc.cmake.in  \
      --replace "@OPENJPEG_INSTALL_LIB_DIR@" "@OPENJPEG_INSTALL_FULL_LIB_DIR@"
    ln -sr ${itkGenericLabelInterpolatorSrc} Modules/External/ITKGenericLabelInterpolator
    ln -sr ${itkAdaptiveDenoisingSrc} Modules/External/ITKAdaptiveDenoising
    ln -sr ${itkSimpleITKFiltersSrc} Modules/External/ITKSimpleITKFilters
  '';

  cmakeFlags = [
    "-DBUILD_EXAMPLES=OFF"
    "-DBUILD_SHARED_LIBS=ON"
    "-DITK_FORBID_DOWNLOADS=ON"
    "-DModule_ITKMINC=ON"
    "-DModule_ITKIOMINC=ON"
    "-DModule_ITKIOTransformMINC=ON"
    "-DModule_SimpleITKFilters=ON"
    "-DModule_ITKVtkGlue=ON"
    "-DModule_ITKReview=ON"
    "-DModule_MGHIO=ON"
    "-DModule_AdaptiveDenoising=ON"
    "-DModule_GenericLabelInterpolator=ON"
  ];

  nativeBuildInputs = [ cmake xz makeWrapper ];
  buildInputs = [ libX11 libuuid vtk ] ++ lib.optionals stdenv.isDarwin [ Cocoa ];
  # Due to ITKVtkGlue=ON and the additional dependencies needed to configure VTK 9
  # (specifically libGL and libX11 on Linux),
  # it's now seemingly necessary for packages that configure ITK to
  # also include configuration deps of VTK, even if VTK is not required or available.
  # These deps were propagated from VTK 9 in https://github.com/NixOS/nixpkgs/pull/206935,
  # so we simply propagate them again from ITK.
  # This admittedly is a hack and seems like an issue with VTK 9's CMake configuration.
  propagatedBuildInputs = vtk.propagatedBuildInputs;

  postInstall = ''
    wrapProgram "$out/bin/h5c++" --prefix PATH ":" "${pkg-config}/bin"
  '';

  meta = {
    description = "Insight Segmentation and Registration Toolkit";
    homepage = "https://www.itk.org";
    license = lib.licenses.asl20;
    maintainers = with lib.maintainers; [viric];
  };
}