2022-01-25 03:21:06 +00:00
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{ lib
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, stdenv
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, fetchFromGitHub
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, python3
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, which
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, ldc
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, zlib
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, lz4
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}:
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2020-10-16 20:44:37 +00:00
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stdenv.mkDerivation rec {
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pname = "sambamba";
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2023-10-09 19:29:22 +00:00
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version = "1.0.1";
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2020-10-16 20:44:37 +00:00
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src = fetchFromGitHub {
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owner = "biod";
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repo = "sambamba";
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rev = "v${version}";
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2023-10-09 19:29:22 +00:00
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sha256 = "sha256-3O9bHGpMuCgdR2Wm7Dv1VUjMT1QTn8K1hdwgjvwhFDw=";
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2020-10-16 20:44:37 +00:00
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fetchSubmodules = true;
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};
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2021-03-19 17:17:44 +00:00
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nativeBuildInputs = [ which python3 ldc ];
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2022-01-25 03:21:06 +00:00
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buildInputs = [ zlib lz4 ];
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2020-10-16 20:44:37 +00:00
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2022-11-02 22:02:43 +00:00
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buildFlags = [
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"CC=${stdenv.cc.targetPrefix}cc"
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];
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2020-10-16 20:44:37 +00:00
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# Upstream's install target is broken; copy manually
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installPhase = ''
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2022-11-02 22:02:43 +00:00
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runHook preInstall
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install -Dm755 bin/sambamba-${version} $out/bin/sambamba
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runHook postInstall
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2020-10-16 20:44:37 +00:00
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'';
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2021-01-15 22:18:51 +00:00
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meta = with lib; {
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2020-10-16 20:44:37 +00:00
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description = "SAM/BAM processing tool";
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2024-04-21 15:54:59 +00:00
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mainProgram = "sambamba";
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2020-10-16 20:44:37 +00:00
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homepage = "https://lomereiter.github.io/sambamba/";
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maintainers = with maintainers; [ jbedo ];
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license = with licenses; gpl2;
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platforms = platforms.x86_64;
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};
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}
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