50 lines
1.5 KiB
Nix
50 lines
1.5 KiB
Nix
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{ stdenv, fetchpatch, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }:
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let
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htslibPatch = fetchpatch {
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url = "https://github.com/dellytools/delly/commit/0e5c710b0c5ea790bb39699d4cbd49cf4fb86f14.diff";
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sha256 = "09bz1qqvzhdzm99hf9zgrv80kq9jlr1m2mdvx96p2hk5lpnbdl7y";
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excludes = [ "src/htslib" ];
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};
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in stdenv.mkDerivation rec {
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pname = "delly";
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version = "0.8.2";
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src = fetchFromGitHub {
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owner = "dellytools";
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repo = pname;
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rev = "v${version}";
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sha256 = "14bkmixz7737xj192ww96s3a20zc7xs7r04db8avw3ggi3i1s1cs";
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};
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patches = [ htslibPatch ];
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buildInputs = [ zlib htslib bzip2 lzma ncurses boost ];
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EBROOTHTSLIB = htslib;
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installPhase = ''
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runHook preInstall
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install -Dm555 src/delly $out/bin/delly
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runHook postInstall
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'';
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meta = with stdenv.lib; {
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description = "Structural variant caller for mapped DNA sequenced data";
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license = licenses.gpl3;
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maintainers = with maintainers; [ scalavision ];
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platforms = platforms.linux;
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longDescription = ''
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Delly is an integrated structural variant (SV) prediction method
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that can discover, genotype and visualize deletions, tandem duplications,
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inversions and translocations at single-nucleotide resolution in
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short-read massively parallel sequencing data. It uses paired-ends,
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split-reads and read-depth to sensitively and accurately delineate
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genomic rearrangements throughout the genome.
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'';
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};
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}
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