65 lines
1.3 KiB
Nix
65 lines
1.3 KiB
Nix
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{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, pythonOlder
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, ninja
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, ignite
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, numpy
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, pybind11
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, pytorch
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, which
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}:
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buildPythonPackage rec {
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pname = "monai";
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version = "0.9.0";
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disabled = pythonOlder "3.7";
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src = fetchFromGitHub {
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owner = "Project-MONAI";
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repo = "MONAI";
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rev = version;
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sha256 = "sha256-HxW9WYxt2a7fS9/1E9DtiH+SCTTJoxYBfgZqskYdcvI=";
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};
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# Ninja is not detected by setuptools for some reason even though it's present:
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postPatch = ''
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substituteInPlace "setup.cfg" --replace "ninja" ""
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'';
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preBuild = ''
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export MAX_JOBS=$NIX_BUILD_CORES;
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'';
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nativeBuildInputs = [ ninja which ];
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buildInputs = [ pybind11 ];
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propagatedBuildInputs = [ numpy pytorch ignite ];
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BUILD_MONAI = 1;
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doCheck = false; # takes too long; numerous dependencies, some not in Nixpkgs
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pythonImportsCheck = [
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"monai"
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"monai.apps"
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"monai.data"
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"monai.engines"
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"monai.handlers"
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"monai.inferers"
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"monai.losses"
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"monai.metrics"
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"monai.optimizers"
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"monai.networks"
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"monai.transforms"
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"monai.utils"
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"monai.visualize"
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];
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meta = with lib; {
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description = "Pytorch framework (based on Ignite) for deep learning in medical imaging";
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homepage = "https://github.com/Project-MONAI/MONAI";
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license = licenses.asl20;
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maintainers = [ maintainers.bcdarwin ];
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};
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}
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