depot/third_party/nixpkgs/pkgs/development/libraries/libminc/default.nix

{ lib, stdenv, fetchFromGitHub, cmake, zlib, netcdf, nifticlib, hdf5 }:

stdenv.mkDerivation (finalAttrs: {
  pname   = "libminc";
  version = "2.4.06";

  src = fetchFromGitHub {
    owner = "BIC-MNI";
    repo = "libminc";
    rev = "refs/tags/release-${finalAttrs.version}";
    hash = "sha256-HTt3y0AFM9pkEkWPb9cDmvUz4iBQWfpX7wLF9Vlg8hc=";
  };

  postPatch = ''
    patchShebangs .
  '';

  nativeBuildInputs = [ cmake ];
  buildInputs = [
    zlib
    nifticlib
  ];
  propagatedBuildInputs = [
    netcdf
    hdf5
  ];

  cmakeFlags = [
    "-DLIBMINC_MINC1_SUPPORT=ON"
    "-DLIBMINC_BUILD_SHARED_LIBS=ON"
    "-DLIBMINC_USE_NIFTI=ON"
    "-DLIBMINC_USE_SYSTEM_NIFTI=ON"
  ];

  doCheck = !stdenv.isDarwin;
    # -j1: see https://github.com/BIC-MNI/libminc/issues/110
  checkPhase = ''
    ctest -j1 --output-on-failure
  '';

  meta = with lib; {
    homepage = "https://github.com/BIC-MNI/libminc";
    description = "Medical imaging library based on HDF5";
    maintainers = with maintainers; [ bcdarwin ];
    platforms = platforms.unix;
    license = licenses.free;
  };
})