56 lines
1.5 KiB
Nix
56 lines
1.5 KiB
Nix
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{
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lib,
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stdenv,
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fetchFromGitLab,
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runCommand,
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mafft,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "mafft";
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version = "7.526";
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src = fetchFromGitLab {
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owner = "sysimm";
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repo = "mafft";
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rev = "v${finalAttrs.version}";
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hash = "sha256-VNe00r12qEkLEbpZdJCe5xZ73JA3uAmuAeG+eSeRDI0=";
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};
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preBuild = ''
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cd ./core
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make clean
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'';
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makeFlags = [
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"CC=${stdenv.cc.targetPrefix}cc"
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"PREFIX=$(out)"
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];
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passthru.tests = {
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simple = runCommand "${finalAttrs.pname}-test" { } ''
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mkdir $out
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cd ${finalAttrs.src}/test
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${lib.getExe mafft} sample > $out/test.fftns2
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${lib.getExe mafft} --maxiterate 100 sample > $out/test.fftnsi
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${lib.getExe mafft} --globalpair sample > $out/test.gins1
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${lib.getExe mafft} --globalpair --maxiterate 100 sample > $out/test.ginsi
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${lib.getExe mafft} --localpair sample > $out/test.lins1
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${lib.getExe mafft} --localpair --maxiterate 100 sample > $out/test.linsi
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diff $out/test.fftns2 sample.fftns2
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diff $out/test.fftnsi sample.fftnsi
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diff $out/test.gins1 sample.gins1
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diff $out/test.ginsi sample.ginsi
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diff $out/test.lins1 sample.lins1
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'';
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};
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meta = with lib; {
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description = "Multiple alignment program for amino acid or nucleotide sequences";
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homepage = "https://mafft.cbrc.jp/alignment/software/";
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license = licenses.bsd3;
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maintainers = with maintainers; [ natsukium ];
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platforms = platforms.unix;
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};
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})
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