82 lines
1.7 KiB
Nix
82 lines
1.7 KiB
Nix
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{
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lib,
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buildPythonPackage,
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pythonOlder,
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fetchFromGitHub,
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hatchling,
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dask,
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numpy,
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python-dateutil,
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spatial-image,
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xarray,
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xarray-datatree,
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zarr,
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dask-image,
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fsspec,
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jsonschema,
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nbmake,
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pooch,
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pytestCheckHook,
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pytest-mypy,
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urllib3,
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}:
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buildPythonPackage rec {
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pname = "multiscale-spatial-image";
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version = "1.0.1";
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pyproject = true;
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disabled = pythonOlder "3.8";
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src = fetchFromGitHub {
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owner = "spatial-image";
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repo = "multiscale-spatial-image";
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rev = "refs/tags/v${version}";
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hash = "sha256-s/88N8IVkj+9MZYAtEJSpmmDdjIxf4S6U5gYr86Ikrw=";
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};
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build-system = [ hatchling ];
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dependencies = [
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dask
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numpy
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python-dateutil
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spatial-image
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xarray
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xarray-datatree
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zarr
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];
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optional-dependencies = {
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dask-image = [ dask-image ];
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#itk = [
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# itk-filtering # not in nixpkgs yet
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#];
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test = [
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dask-image
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fsspec
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#ipfsspec # not in nixpkgs
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#itk-filtering # not in nixpkgs
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jsonschema
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nbmake
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pooch
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pytest-mypy
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urllib3
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];
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};
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nativeCheckInputs = [ pytestCheckHook ] ++ optional-dependencies.test;
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doCheck = false; # all test files try to download data
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pythonImportsCheck = [ "multiscale_spatial_image" ];
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meta = {
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description = "Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF";
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homepage = "https://github.com/spatial-image/multiscale-spatial-image";
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changelog = "https://github.com/spatial-image/multiscale-spatial-image/releases/tag/v${version}";
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license = lib.licenses.asl20;
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maintainers = with lib.maintainers; [ bcdarwin ];
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};
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}
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