depot/third_party/nixpkgs/pkgs/applications/science/misc/cwltool/default.nix

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{ lib
, python3Packages
}:
python3Packages.buildPythonApplication rec {
pname = "cwltool";
version = "3.1.20210628163208";
src = python3Packages.fetchPypi {
inherit pname version;
sha256 = "21b885f725420413d2f87eadc5e81c08a9c91beceda89b35d1a702ec4df47e52";
};
postPatch = ''
substituteInPlace setup.py \
--replace 'prov == 1.5.1' 'prov'
'';
propagatedBuildInputs = with python3Packages; [
argcomplete
bagit
coloredlogs
mypy-extensions
prov
psutil
pydot
schema-salad
shellescape
typing-extensions
];
doCheck = false; # hard to setup
pythonImportsCheck = [ "cwltool" ];
meta = with lib; {
homepage = "https://www.commonwl.org";
license = with licenses; [ asl20 ];
description = "Common Workflow Language reference implementation";
maintainers = with maintainers; [ veprbl ];
};
}