From a3d472012987079e9ead1348260a6b7c56fc3d48 Mon Sep 17 00:00:00 2001 From: Default email Date: Wed, 28 Dec 2022 22:21:41 +0100 Subject: [PATCH] Project import generated by Copybara. GitOrigin-RevId: e182da8622a354d44c39b3d7a542dc12cd7baa5f --- third_party/nixpkgs/.github/CODEOWNERS | 5 + third_party/nixpkgs/CONTRIBUTING.md | 4 +- .../link-unix-man-references.lua | 25 +- third_party/nixpkgs/doc/builders/images.xml | 1 + .../builders/images/makediskimage.section.md | 107 + .../doc/builders/images/ocitools.section.md | 2 +- .../doc/builders/packages/dlib.section.md | 2 +- third_party/nixpkgs/doc/builders/special.xml | 1 + .../special/darwin-builder.section.md | 60 + .../coding-conventions.chapter.md | 4 + .../reviewing-contributions.chapter.md | 2 +- .../submitting-changes.chapter.md | 2 +- .../nixpkgs/doc/doc-support/default.nix | 18 +- .../doc/doc-support/lib-function-docs.nix | 36 +- .../doc-support/lib-function-locations.nix | 6 +- .../nixpkgs/doc/doc-support/parameters.xml | 1 + third_party/nixpkgs/doc/functions/library.xml | 24 +- .../doc/functions/nix-gitignore.section.md | 4 +- .../languages-frameworks/android.section.md | 1 - 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+- .../tools/networking/lxi-tools/default.nix | 4 +- .../networking/magic-wormhole-rs/default.nix | 16 +- .../tools/networking/miniupnpc/default.nix | 1 + .../tools/networking/mmsd-tng/default.nix | 53 + .../pkgs/tools/networking/mubeng/default.nix | 13 +- .../tools/networking/ndn-tools/default.nix | 2 +- .../pkgs/tools/networking/netbird/default.nix | 4 +- .../pkgs/tools/networking/q/default.nix | 6 +- .../tools/networking/tox-node/default.nix | 35 +- .../pkgs/tools/networking/v2ray/default.nix | 4 +- .../tools/networking/vpn-slice/default.nix | 4 +- .../pkgs/tools/networking/xray/default.nix | 10 +- .../nix-template/default.nix | 6 +- .../package-management/nix-update/default.nix | 4 +- .../tools/package-management/nix/default.nix | 13 + .../nixpkgs-review/default.nix | 7 +- .../package-management/packagekit/default.nix | 2 +- .../protontricks/default.nix | 4 +- .../pkgs/tools/security/bitwarden/default.nix | 4 +- .../tools/security/cve-bin-tool/default.nix | 6 +- .../tools/security/enum4linux-ng/default.nix | 4 +- .../tools/security/faraday-cli/default.nix | 4 +- .../tools/security/feroxbuster/default.nix | 9 +- .../security/firefox_decrypt/default.nix | 1 - .../pkgs/tools/security/gobuster/default.nix | 7 +- .../pkgs/tools/security/gopass/default.nix | 6 +- .../tools/security/gopass/git-credential.nix | 6 +- .../pkgs/tools/security/gopass/hibp.nix | 6 +- .../pkgs/tools/security/gopass/jsonapi.nix | 6 +- .../pkgs/tools/security/gopass/summon.nix | 6 +- .../pkgs/tools/security/grap/default.nix | 51 + .../pkgs/tools/security/iaito/default.nix | 11 +- .../pkgs/tools/security/jd-gui/default.nix | 35 +- .../tools/security/ldapnomnom/default.nix | 7 +- .../pkgs/tools/security/metasploit/Gemfile | 2 +- .../tools/security/metasploit/Gemfile.lock | 53 +- .../tools/security/metasploit/default.nix | 4 +- .../pkgs/tools/security/metasploit/gemset.nix | 82 +- .../tools/security/oath-toolkit/default.nix | 2 +- .../tools/security/osv-scanner/default.nix | 42 + .../pkgs/tools/security/saml2aws/default.nix | 4 +- .../tools/security/sbsigntool/default.nix | 4 +- .../pkgs/tools/security/terrascan/default.nix | 7 +- .../pkgs/tools/security/tor/default.nix | 4 +- .../pkgs/tools/security/vals/default.nix | 37 + .../system/automatic-timezoned/default.nix | 6 +- .../pkgs/tools/system/gkraken/default.nix | 1 + .../pkgs/tools/system/logrotate/default.nix | 4 +- .../pkgs/tools/system/memtester/default.nix | 4 +- .../pkgs/tools/system/netdata/default.nix | 4 +- .../pkgs/tools/system/plan9port/default.nix | 8 +- .../pkgs/tools/system/rsyslog/default.nix | 6 +- .../pkgs/tools/system/s-tui/default.nix | 2 +- .../nixpkgs/pkgs/tools/text/d2/default.nix | 6 +- .../pkgs/tools/text/diffsitter/default.nix | 6 +- .../pkgs/tools/text/difftastic/default.nix | 6 +- .../pkgs/tools/text/jumanpp/default.nix | 24 +- .../pkgs/tools/text/mdbook-katex/default.nix | 6 +- .../pkgs/tools/text/mdbook/default.nix | 6 +- .../pkgs/tools/text/opencc/default.nix | 4 +- .../pkgs/tools/text/podiff/default.nix | 6 +- .../pkgs/tools/text/pomsky/default.nix | 23 + .../pkgs/tools/text/scraper/default.nix | 6 +- .../pkgs/tools/text/snippetpixie/default.nix | 4 +- .../pkgs/tools/text/textpieces/default.nix | 4 +- .../nixpkgs/pkgs/tools/text/vale/default.nix | 4 +- .../pkgs/tools/text/validator-nu/default.nix | 68 + .../tools/typesetting/docbook2odf/default.nix | 2 +- .../tools/typesetting/tectonic/default.nix | 6 +- .../tools/typesetting/tex/texlive/combine.nix | 154 +- .../virtualization/cri-tools/default.nix | 4 +- .../tools/virtualization/linode-cli/update.sh | 2 +- .../virtualization/rootlesskit/default.nix | 2 +- .../xe-guest-utilities/default.nix | 103 +- .../xe-guest-utilities/ip-address.patch | 16 - .../pkgs/tools/wayland/kanshi/default.nix | 4 +- .../pkgs/tools/wayland/wev/default.nix | 2 +- .../nixpkgs/pkgs/top-level/aliases.nix | 11 +- .../nixpkgs/pkgs/top-level/all-packages.nix | 692 +- .../pkgs/top-level/darwin-packages.nix | 19 + .../nixpkgs/pkgs/top-level/emacs-packages.nix | 2 +- .../pkgs/top-level/gnuradio-packages.nix | 2 +- .../nixpkgs/pkgs/top-level/linux-kernels.nix | 8 +- .../nixpkgs/pkgs/top-level/lua-packages.nix | 15 +- .../nixpkgs/pkgs/top-level/nim-packages.nix | 3 + .../nixpkgs/pkgs/top-level/ocaml-packages.nix | 12 +- .../nixpkgs/pkgs/top-level/php-packages.nix | 2 +- .../pkgs/top-level/python-packages.nix | 34 +- .../nixpkgs/pkgs/top-level/qt5-packages.nix | 2 + .../nixpkgs/pkgs/top-level/release-cross.nix | 9 +- .../pkgs/top-level/release-haskell.nix | 15 - 2136 files changed, 52135 insertions(+), 30991 deletions(-) create mode 100644 third_party/nixpkgs/doc/builders/images/makediskimage.section.md create mode 100644 third_party/nixpkgs/doc/builders/special/darwin-builder.section.md create mode 100644 third_party/nixpkgs/nixos/modules/installer/cd-dvd/installation-cd-minimal-new-kernel-no-zfs.nix create mode 100644 third_party/nixpkgs/nixos/modules/installer/sd-card/sd-image-aarch64-new-kernel-no-zfs-installer.nix create mode 100644 third_party/nixpkgs/nixos/modules/profiles/keys/ssh_host_ed25519_key create mode 100644 third_party/nixpkgs/nixos/modules/profiles/keys/ssh_host_ed25519_key.pub create mode 100644 third_party/nixpkgs/nixos/modules/profiles/macos-builder.nix create mode 100644 third_party/nixpkgs/nixos/modules/programs/i3lock.nix create mode 100644 third_party/nixpkgs/nixos/modules/programs/nix-index.nix create mode 100644 third_party/nixpkgs/nixos/modules/programs/xastir.nix create mode 100644 third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters/statsd.nix create mode 100644 third_party/nixpkgs/nixos/modules/services/networking/firewall-iptables.nix create mode 100644 third_party/nixpkgs/nixos/modules/services/networking/firewall-nftables.nix create mode 100644 third_party/nixpkgs/nixos/modules/services/networking/mmsd.nix create mode 100644 third_party/nixpkgs/nixos/modules/services/networking/nat-iptables.nix create mode 100644 third_party/nixpkgs/nixos/modules/services/networking/nat-nftables.nix create mode 100644 third_party/nixpkgs/nixos/modules/services/printing/cups-pdf.nix create mode 100644 third_party/nixpkgs/nixos/modules/services/web-apps/akkoma.md create mode 100644 third_party/nixpkgs/nixos/modules/services/web-apps/akkoma.nix create mode 100644 third_party/nixpkgs/nixos/modules/services/web-apps/akkoma.xml create mode 100644 third_party/nixpkgs/nixos/modules/tasks/filesystems/envfs.nix delete mode 100644 third_party/nixpkgs/nixos/modules/testing/minimal-kernel.nix create mode 100644 third_party/nixpkgs/nixos/tests/akkoma.nix create mode 100644 third_party/nixpkgs/nixos/tests/cups-pdf.nix create mode 100644 third_party/nixpkgs/nixos/tests/envfs.nix create mode 100644 third_party/nixpkgs/nixos/tests/headscale.nix create mode 100644 third_party/nixpkgs/nixos/tests/nginx-globalredirect.nix create mode 100644 third_party/nixpkgs/pkgs/applications/audio/tuner/default.nix create mode 100644 third_party/nixpkgs/pkgs/applications/emulators/bsnes/ares/002-sips-to-png2icns.patch create mode 100644 third_party/nixpkgs/pkgs/applications/emulators/bsnes/ares/003-fix-darwin-install.patch create mode 100644 third_party/nixpkgs/pkgs/applications/emulators/retroarch/retroarch-assets.nix create mode 100644 third_party/nixpkgs/pkgs/applications/emulators/retroarch/use-default-values-for-libretro_info_path-assets_directory.patch delete mode 100644 third_party/nixpkgs/pkgs/applications/emulators/retroarch/use-fixed-path-for-libretro_core_info.patch create mode 100644 third_party/nixpkgs/pkgs/applications/maui/mauikit-calendar.nix create mode 100644 third_party/nixpkgs/pkgs/applications/misc/cask-server/default.nix create mode 100644 third_party/nixpkgs/pkgs/applications/misc/dmenu-rs/Cargo.lock create mode 100644 third_party/nixpkgs/pkgs/applications/misc/dmenu-rs/default.nix rename third_party/nixpkgs/pkgs/applications/misc/{electrum-grs/default.nix => electrum/grs.nix} (88%) create mode 100644 third_party/nixpkgs/pkgs/applications/misc/lswt/default.nix create mode 100644 third_party/nixpkgs/pkgs/applications/misc/nwg-dock/default.nix create mode 100644 third_party/nixpkgs/pkgs/applications/misc/slweb/default.nix create mode 100644 third_party/nixpkgs/pkgs/applications/misc/wordbook/default.nix create mode 100644 third_party/nixpkgs/pkgs/applications/networking/cluster/calico/default.nix create mode 100644 third_party/nixpkgs/pkgs/applications/plasma-mobile/plasmatube/0001-Add-placeholders-for-runtime-dependencies.patch rename third_party/nixpkgs/pkgs/applications/plasma-mobile/{plasmatube.nix => plasmatube/default.nix} (67%) create mode 100644 third_party/nixpkgs/pkgs/applications/radio/ax25-tools/default.nix create mode 100644 third_party/nixpkgs/pkgs/applications/science/biology/sratoolkit/default.nix create mode 100644 third_party/nixpkgs/pkgs/applications/science/electronics/kicad/writable.patch delete mode 100644 third_party/nixpkgs/pkgs/applications/science/math/R/test-reg-packages.patch create mode 100644 third_party/nixpkgs/pkgs/applications/system/booster/default.nix rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/bfg-repo-cleaner/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/bit/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/bitbucket-server-cli/Gemfile (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/bitbucket-server-cli/Gemfile.lock (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/bitbucket-server-cli/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/bitbucket-server-cli/gemset.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/bump2version/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/cgit/common.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/cgit/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/cgit/pink.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/conform/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/darcs-to-git/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/delta/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/diff-so-fancy/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/fast-export/default.nix (100%) create mode 100644 third_party/nixpkgs/pkgs/applications/version-management/forgejo/default.nix delete mode 100644 third_party/nixpkgs/pkgs/applications/version-management/fornalder/Cargo.lock rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gex/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gfold/default.nix (83%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gg/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gh/default.nix (88%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/ghorg/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/ghq/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/ghr/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-absorb/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-aggregator/default.nix (100%) delete mode 100644 third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitstats/default.nix rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-annex-metadata-gui/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-annex-remote-dbx/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-annex-remote-googledrive/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-annex-remote-rclone/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-annex-utils/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-appraise/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-backup/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-big-picture/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-branchless/default.nix (100%) create mode 100644 third_party/nixpkgs/pkgs/applications/version-management/git-branchstack/default.nix rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-bug/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-chglog/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-cinnabar/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-cliff/default.nix (59%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-codeowners/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-codereview/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-cola/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-crecord/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-credential-1password/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-credential-keepassxc/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-crypt/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-delete-merged-branches/default.nix (88%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-extras/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-fame/Gemfile (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-fame/Gemfile.lock (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-fame/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-fame/gemset.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-fire/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-ftp/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-gone/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-hound/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-hub/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-ignore/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-imerge/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-interactive-rebase-tool/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-lfs/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-machete/default.nix (94%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-my/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-nomad/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-octopus/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-open/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-privacy/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-publish/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-quick-stats/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-quickfix/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-radar/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-recent/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-remote-codecommit/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-remote-gcrypt/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-remote-hg/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-reparent/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-repo-updater/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-repo/default.nix (95%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-repo/import-ssl-module.patch (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-review/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-secret/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-secrets/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-series/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-sizer/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-standup/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-stree/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-subrepo/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-subset/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-subtrac/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-sync/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-team/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-test/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-town/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-trim/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-up/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-vanity-hash/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-vendor/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-when-merged/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git-workspace/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git/docbook2texi.patch (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git/git-send-email-honor-PATH.patch (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git/git-sh-i18n.patch (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git/installCheck-path.patch (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git/ssh-path.patch (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git/update.sh (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/git2cl/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gita/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitbatch/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitflow/default.nix (78%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitless/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitlint/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitls/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitmux/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitnuro/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitoxide/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitsign/default.nix (100%) create mode 100644 third_party/nixpkgs/pkgs/applications/version-management/gitstats/default.nix rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitstatus/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitstatus/romkatv_libgit2.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitty/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitui/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gitweb/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/glab/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/glitter/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/gst/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/hub/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/hut/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/josh/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/lab/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/lefthook/default.nix (84%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/legit/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/lucky-commit/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/pass-git-helper/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/qgit/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/radicle-cli/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/radicle-upstream/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/rs-git-fsmonitor/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/scmpuff/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/stgit/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/subgit/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/svn-all-fast-export/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/svn2git/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/thicket/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/tig/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/topgit/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/transcrypt/default.nix (100%) rename third_party/nixpkgs/pkgs/applications/version-management/{git-and-tools => }/transcrypt/helper-scripts_depspathprefix.patch (100%) create mode 100644 third_party/nixpkgs/pkgs/applications/video/mpv/scripts/inhibit-gnome.nix create mode 100644 third_party/nixpkgs/pkgs/applications/video/openshot-qt/undef-fpret-on-aarch64-darwin.patch create mode 100644 third_party/nixpkgs/pkgs/applications/virtualization/toolbox/default.nix create mode 100644 third_party/nixpkgs/pkgs/applications/virtualization/toolbox/glibc.patch delete mode 100644 third_party/nixpkgs/pkgs/applications/window-managers/bevelbar/default.nix create mode 100644 third_party/nixpkgs/pkgs/applications/window-managers/maui-shell/default.nix create mode 100644 third_party/nixpkgs/pkgs/build-support/make-hardcode-gsettings-patch/default.nix create mode 100644 third_party/nixpkgs/pkgs/build-support/make-hardcode-gsettings-patch/hardcode-gsettings.cocci create mode 100644 third_party/nixpkgs/pkgs/data/fonts/garamond-libre/default.nix create mode 100644 third_party/nixpkgs/pkgs/data/fonts/smiley-sans/default.nix create mode 100644 third_party/nixpkgs/pkgs/data/misc/dtv-scan-tables/default.nix create mode 100644 third_party/nixpkgs/pkgs/data/themes/fluent-gtk-theme/default.nix create mode 100644 third_party/nixpkgs/pkgs/data/themes/gruvbox-gtk-theme/default.nix create mode 100644 third_party/nixpkgs/pkgs/desktops/cinnamon/folder-color-switcher/default.nix create mode 100644 third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-fileroller/default.nix create mode 100644 third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/default.nix create mode 100644 third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/load-extensions-from-env.patch create mode 100644 third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/python-path.patch create mode 100644 third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/fix-nemo-actions-duplicate-menu-items.patch create mode 100644 third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/load-extensions-from-env.patch create mode 100644 third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/wrapper.nix delete mode 100644 third_party/nixpkgs/pkgs/desktops/xfce/core/thunar/thunarx_plugins_directory.patch delete mode 100644 third_party/nixpkgs/pkgs/development/compilers/inklecate/deps-linux.nix rename third_party/nixpkgs/pkgs/development/compilers/inklecate/{deps-darwin.nix => deps.nix} (60%) rename third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/{0002-skip-building-doc.patch => 0001-skip-building-doc.patch} (77%) delete mode 100644 third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0001-skip-symlink-system-libraries.patch rename third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/{0003-skip-failing-tests.patch => 0002-skip-failing-and-flaky-tests.patch} (74%) delete mode 100644 third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0003-skip-failing-and-flaky-tests.patch delete mode 100644 third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0004-ignore-absolute-path-when-loading-library.patch delete mode 100755 third_party/nixpkgs/pkgs/development/haskell-modules/patches/cachix.patch create mode 100644 third_party/nixpkgs/pkgs/development/haskell-modules/patches/haskell-ci-optparse-applicative-0.17-ShellCheck-0.8.patch delete mode 100644 third_party/nixpkgs/pkgs/development/haskell-modules/patches/lambdabot-core-ghc9.patch delete mode 100644 third_party/nixpkgs/pkgs/development/haskell-modules/patches/lambdabot-novelty-plugins-ghc9.patch create mode 100644 third_party/nixpkgs/pkgs/development/haskell-modules/patches/mbox-time-1.10.patch delete mode 100644 third_party/nixpkgs/pkgs/development/libraries/flatpak/no-breaking-fish.patch create mode 100644 third_party/nixpkgs/pkgs/development/libraries/git2-cpp/default.nix delete mode 100644 third_party/nixpkgs/pkgs/development/libraries/glib/hardcode-gsettings.cocci create mode 100644 third_party/nixpkgs/pkgs/development/libraries/itk/5.2.x.nix delete mode 100644 third_party/nixpkgs/pkgs/development/libraries/itk/unstable.nix create mode 100644 third_party/nixpkgs/pkgs/development/libraries/libax25/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/libraries/maui-core/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/libraries/mygui/disable-framework.patch create mode 100644 third_party/nixpkgs/pkgs/development/libraries/ta-lib/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/nim-packages/getdns/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/ocaml-modules/httpaf/lwt-unix.nix delete mode 100644 third_party/nixpkgs/pkgs/development/ocaml-modules/janestreet/pythonlib.patch create mode 100644 third_party/nixpkgs/pkgs/development/ocaml-modules/multipart-form-data/default.nix delete mode 100644 third_party/nixpkgs/pkgs/development/ocaml-modules/opium_kernel/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/ocaml-modules/rock/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/autofaiss/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/beancount-black/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/beancount-parser/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/btsmarthub_devicelist/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/embedding-reader/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/hassil/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/hydra-core/antlr4.patch rename third_party/nixpkgs/pkgs/development/python-modules/{hydra => hydra-core}/default.nix (60%) create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/mip/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/mip/test-data-path.patch create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/mongoquery/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/omegaconf/antlr4.patch create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/packvers/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/webthing-ws/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/python-modules/wn/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/tools/azure-static-sites-client/default.nix create mode 100755 third_party/nixpkgs/pkgs/development/tools/azure-static-sites-client/update.sh create mode 100644 third_party/nixpkgs/pkgs/development/tools/azure-static-sites-client/versions.json delete mode 100644 third_party/nixpkgs/pkgs/development/tools/buf/buf-tests-dont-use-file-transport.patch create mode 100644 third_party/nixpkgs/pkgs/development/tools/database/vitess/default.nix rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/ansible-language-server/default.nix (82%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/beancount-language-server/default.nix (100%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/buf-language-server/default.nix (100%) rename third_party/nixpkgs/pkgs/development/tools/{misc => language-servers}/ccls/default.nix (100%) rename third_party/nixpkgs/pkgs/development/tools/{misc => language-servers}/ccls/wrapper (100%) create mode 100644 third_party/nixpkgs/pkgs/development/tools/language-servers/fortls/default.nix rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/fortran-language-server/default.nix (100%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/gopls/default.nix (100%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/jdt-language-server/default.nix (100%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/jsonnet-language-server/default.nix (100%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/kotlin-language-server/default.nix (100%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/metals/default.nix (100%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/millet/default.nix (100%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/nil/default.nix (90%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/rnix-lsp/default.nix (100%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/sumneko-lua-language-server/default.nix (96%) rename third_party/nixpkgs/pkgs/development/tools/{misc => language-servers}/svls/default.nix (100%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/vala-language-server/default.nix (94%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/verible/default.nix (100%) rename third_party/nixpkgs/pkgs/development/tools/{ => language-servers}/verible/remove-unused-deps.patch (100%) create mode 100644 third_party/nixpkgs/pkgs/development/tools/misc/highlight-assertions/default.nix rename third_party/nixpkgs/pkgs/development/tools/mongosh/{gen => }/composition.nix (89%) rename third_party/nixpkgs/pkgs/development/tools/mongosh/{gen => }/packages.nix (81%) create mode 100644 third_party/nixpkgs/pkgs/development/tools/nasmfmt/go.mod create mode 100644 third_party/nixpkgs/pkgs/development/tools/norminette/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/tools/package-project-cmake/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/tools/poac/default.nix delete mode 100644 third_party/nixpkgs/pkgs/development/tools/rust/cargo-bolero/Cargo.lock create mode 100644 third_party/nixpkgs/pkgs/development/tools/rust/cargo-chef/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/tools/rust/cargo-mommy/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/tools/rust/cargo2junit/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/tools/supabase-cli/default.nix create mode 100644 third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/.prettierignore create mode 100644 third_party/nixpkgs/pkgs/games/nanosaur2/default.nix create mode 100644 third_party/nixpkgs/pkgs/misc/cups/drivers/cups-pdf-to-pdf/default.nix create mode 100644 third_party/nixpkgs/pkgs/os-specific/darwin/plistwatch/default.nix create mode 100644 third_party/nixpkgs/pkgs/os-specific/darwin/plistwatch/go-modules.patch create mode 100644 third_party/nixpkgs/pkgs/os-specific/linux/broadcom-sta/linux-6.1.patch create mode 100644 third_party/nixpkgs/pkgs/os-specific/linux/catfs/fix-for-rust-1.65.diff delete mode 100644 third_party/nixpkgs/pkgs/os-specific/linux/mdevctl/lock.patch create mode 100644 third_party/nixpkgs/pkgs/os-specific/linux/sgx/azure-dcap-client/default.nix create mode 100644 third_party/nixpkgs/pkgs/os-specific/linux/sgx/azure-dcap-client/test-suite.nix create mode 100644 third_party/nixpkgs/pkgs/servers/akkoma/admin-fe/default.nix create mode 100644 third_party/nixpkgs/pkgs/servers/akkoma/admin-fe/deps.patch create mode 100644 third_party/nixpkgs/pkgs/servers/akkoma/admin-fe/yarn.lock create mode 100644 third_party/nixpkgs/pkgs/servers/akkoma/default.nix create mode 100644 third_party/nixpkgs/pkgs/servers/akkoma/emoji/blobs_gg.nix create mode 100644 third_party/nixpkgs/pkgs/servers/akkoma/mix.nix create mode 100644 third_party/nixpkgs/pkgs/servers/akkoma/pleroma-fe/default.nix create mode 100644 third_party/nixpkgs/pkgs/servers/allmark/default.nix create mode 100644 third_party/nixpkgs/pkgs/servers/code-server/build-vscode-nogit.patch create mode 100644 third_party/nixpkgs/pkgs/servers/minio/legacy_fs.nix create mode 100644 third_party/nixpkgs/pkgs/servers/static-web-server/default.nix create mode 100644 third_party/nixpkgs/pkgs/servers/sunshine/ffmpeg.diff create mode 100644 third_party/nixpkgs/pkgs/servers/sunshine/package-lock.json create mode 100644 third_party/nixpkgs/pkgs/servers/tarantool/default.nix create mode 100644 third_party/nixpkgs/pkgs/servers/web-apps/linx-server/default.nix create mode 100644 third_party/nixpkgs/pkgs/servers/web-apps/linx-server/test.patch create mode 100644 third_party/nixpkgs/pkgs/shells/fzf-git-sh/default.nix create mode 100644 third_party/nixpkgs/pkgs/test/make-hardcode-gsettings-patch/default.nix create mode 100644 third_party/nixpkgs/pkgs/test/make-hardcode-gsettings-patch/fixtures/example-project-patched/main.c create mode 100644 third_party/nixpkgs/pkgs/test/make-hardcode-gsettings-patch/fixtures/example-project/main.c create mode 100644 third_party/nixpkgs/pkgs/tools/X11/bevelbar/default.nix create mode 100644 third_party/nixpkgs/pkgs/tools/admin/pulumi-packages/pulumi-language-nodejs.nix create mode 100644 third_party/nixpkgs/pkgs/tools/admin/rhoas/default.nix delete mode 100644 third_party/nixpkgs/pkgs/tools/backup/percona-xtrabackup/2_4.nix create mode 100644 third_party/nixpkgs/pkgs/tools/filesystems/envfs/default.nix delete mode 100644 third_party/nixpkgs/pkgs/tools/filesystems/httm/cargo-lock.patch delete mode 100644 third_party/nixpkgs/pkgs/tools/filesystems/xfsdump/remove-dmapapi.patch create mode 100644 third_party/nixpkgs/pkgs/tools/graphics/gfxreconstruct/default.nix delete mode 100644 third_party/nixpkgs/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/hunspell-dirs.patch delete mode 100644 third_party/nixpkgs/pkgs/tools/misc/clasp/default.nix create mode 100644 third_party/nixpkgs/pkgs/tools/misc/iay/default.nix create mode 100644 third_party/nixpkgs/pkgs/tools/misc/open-pdf-sign/default.nix create mode 100644 third_party/nixpkgs/pkgs/tools/misc/otel-cli/default.nix create mode 100644 third_party/nixpkgs/pkgs/tools/misc/usbmuxd2/default.nix create mode 100644 third_party/nixpkgs/pkgs/tools/misc/vector/fix-for-rust-1.66.diff create mode 100644 third_party/nixpkgs/pkgs/tools/networking/mmsd-tng/default.nix create mode 100644 third_party/nixpkgs/pkgs/tools/security/grap/default.nix create mode 100644 third_party/nixpkgs/pkgs/tools/security/osv-scanner/default.nix create mode 100644 third_party/nixpkgs/pkgs/tools/security/vals/default.nix create mode 100644 third_party/nixpkgs/pkgs/tools/text/pomsky/default.nix create mode 100644 third_party/nixpkgs/pkgs/tools/text/validator-nu/default.nix delete mode 100644 third_party/nixpkgs/pkgs/tools/virtualization/xe-guest-utilities/ip-address.patch diff --git a/third_party/nixpkgs/.github/CODEOWNERS b/third_party/nixpkgs/.github/CODEOWNERS index 195f534e7c..be881b7f55 100644 --- a/third_party/nixpkgs/.github/CODEOWNERS +++ b/third_party/nixpkgs/.github/CODEOWNERS @@ -48,6 +48,10 @@ # Nixpkgs build-support /pkgs/build-support/writers @lassulus @Profpatsch +# Nixpkgs make-disk-image +/doc/builders/images/makediskimage.section.md @raitobezarius +/nixos/lib/make-disk-image.nix @raitobezarius + # Nixpkgs documentation /maintainers/scripts/db-to-md.sh @jtojnar @ryantm /maintainers/scripts/doc @jtojnar @ryantm @@ -270,6 +274,7 @@ pkgs/development/python-modules/buildcatrust/ @ajs124 @lukegb @mweinelt # GNOME /pkgs/desktops/gnome @jtojnar /pkgs/desktops/gnome/extensions @piegamesde @jtojnar +/pkgs/build-support/make-hardcode-gsettings-patch @jtojnar # Cinnamon /pkgs/desktops/cinnamon @mkg20001 diff --git a/third_party/nixpkgs/CONTRIBUTING.md b/third_party/nixpkgs/CONTRIBUTING.md index 46fe47e059..c6bc661c72 100644 --- a/third_party/nixpkgs/CONTRIBUTING.md +++ b/third_party/nixpkgs/CONTRIBUTING.md @@ -55,7 +55,7 @@ Package version upgrades usually allow for simpler commit messages, including at Pull requests should not be squash merged in order to keep complete commit messages and GPG signatures intact and must not be when the change doesn't make sense as a single commit. This means that, when addressing review comments in order to keep the pull request in an always mergeable status, you will sometimes need to rewrite your branch's history and then force-push it with `git push --force-with-lease`. -Useful git commands that can help a lot with this are `git commit --patch --amend` and `git rebase --interactive @~3`. For more details consult the git man pages. +Useful git commands that can help a lot with this are `git commit --patch --amend` and `git rebase --interactive`. For more details consult the git man pages or online resources like [git-rebase.io](https://git-rebase.io/) or [The Pro Git Book](https://git-scm.com/book/en/v2/Git-Tools-Rewriting-History). ## Rebasing between branches (i.e. from master to staging) @@ -112,7 +112,7 @@ You can also create the backport manually: 2. Check out the target _release branch_, e.g. `release-22.11`. Do not use a _channel branch_ like `nixos-22.11` or `nixpkgs-22.11-darwin`. 3. Create a branch for your change, e.g. `git checkout -b backport`. 4. When the reason to backport is not obvious from the original commit message, use `git cherry-pick -xe ` and add a reason. Otherwise use `git cherry-pick -x `. That's fine for minor version updates that only include security and bug fixes, commits that fixes an otherwise broken package or similar. Please also ensure the commits exists on the master branch; in the case of squashed or rebased merges, the commit hash will change and the new commits can be found in the merge message at the bottom of the master pull request. -5. Push to GitHub and open a backport pull request. Make sure to select the release branch (e.g. `release-22.11`) as the target branch of the pull request, and link to the pull request in which the original change was comitted to `master`. The pull request title should be the commit title with the release version as prefix, e.g. `[22.11]`. +5. Push to GitHub and open a backport pull request. Make sure to select the release branch (e.g. `release-22.11`) as the target branch of the pull request, and link to the pull request in which the original change was committed to `master`. The pull request title should be the commit title with the release version as prefix, e.g. `[22.11]`. 6. When the backport pull request is merged and you have the necessary privileges you can also replace the label `9.needs: port to stable` with `8.has: port to stable` on the original pull request. This way maintainers can keep track of missing backports easier. ## Criteria for Backporting changes diff --git a/third_party/nixpkgs/doc/build-aux/pandoc-filters/link-unix-man-references.lua b/third_party/nixpkgs/doc/build-aux/pandoc-filters/link-unix-man-references.lua index e437ac73a1..b81d4a0979 100644 --- a/third_party/nixpkgs/doc/build-aux/pandoc-filters/link-unix-man-references.lua +++ b/third_party/nixpkgs/doc/build-aux/pandoc-filters/link-unix-man-references.lua @@ -3,10 +3,31 @@ Turns a manpage reference into a link, when a mapping is defined below. ]] local man_urls = { - ["tmpfiles.d(5)"] = "https://www.freedesktop.org/software/systemd/man/tmpfiles.d.html", ["nix.conf(5)"] = "https://nixos.org/manual/nix/stable/#sec-conf-file", - ["systemd.time(7)"] = "https://www.freedesktop.org/software/systemd/man/systemd.time.html", + + ["journald.conf(5)"] = "https://www.freedesktop.org/software/systemd/man/journald.conf.html", + ["logind.conf(5)"] = "https://www.freedesktop.org/software/systemd/man/logind.conf.html", + ["networkd.conf(5)"] = "https://www.freedesktop.org/software/systemd/man/networkd.conf.html", + ["systemd.automount(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.automount.html", + ["systemd.exec(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.exec.html", + ["systemd.link(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.link.html", + ["systemd.mount(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.mount.html", + ["systemd.netdev(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.netdev.html", + ["systemd.network(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.network.html", + ["systemd.nspawn(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.nspawn.html", + ["systemd.path(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.path.html", + ["systemd.resource-control(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.resource-control.html", + ["systemd.scope(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.scope.html", + ["systemd.service(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.service.html", + ["systemd.slice(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.slice.html", + ["systemd.socket(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.socket.html", ["systemd.timer(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.timer.html", + ["systemd.unit(5)"] = "https://www.freedesktop.org/software/systemd/man/systemd.unit.html", + ["timesyncd.conf(5)"] = "https://www.freedesktop.org/software/systemd/man/timesyncd.conf.html", + ["tmpfiles.d(5)"] = "https://www.freedesktop.org/software/systemd/man/tmpfiles.d.html", + ["systemd.time(7)"] = "https://www.freedesktop.org/software/systemd/man/systemd.time.html", + ["systemd-fstab-generator(8)"] = "https://www.freedesktop.org/software/systemd/man/systemd-fstab-generator.html", + ["systemd-networkd-wait-online.service(8)"] = "https://www.freedesktop.org/software/systemd/man/systemd-networkd-wait-online.service.html", } function Code(elem) diff --git a/third_party/nixpkgs/doc/builders/images.xml b/third_party/nixpkgs/doc/builders/images.xml index f86ebd86be..7d06130e3e 100644 --- a/third_party/nixpkgs/doc/builders/images.xml +++ b/third_party/nixpkgs/doc/builders/images.xml @@ -10,4 +10,5 @@ + diff --git a/third_party/nixpkgs/doc/builders/images/makediskimage.section.md b/third_party/nixpkgs/doc/builders/images/makediskimage.section.md new file mode 100644 index 0000000000..9798a0be4d --- /dev/null +++ b/third_party/nixpkgs/doc/builders/images/makediskimage.section.md @@ -0,0 +1,107 @@ +# `` {#sec-make-disk-image} + +`` is a function to create _disk images_ in multiple formats: raw, QCOW2 (QEMU), QCOW2-Compressed (compressed version), VDI (VirtualBox), VPC (VirtualPC). + +This function can create images in two ways: + +- using `cptofs` without any virtual machine to create a Nix store disk image, +- using a virtual machine to create a full NixOS installation. + +When testing early-boot or lifecycle parts of NixOS such as a bootloader or multiple generations, it is necessary to opt for a full NixOS system installation. +Whereas for many web servers, applications, it is possible to work with a Nix store only disk image and is faster to build. + +NixOS tests also use this function when preparing the VM. The `cptofs` method is used when `virtualisation.useBootLoader` is false (the default). Otherwise the second method is used. + +## Features + +For reference, read the function signature source code for documentation on arguments: . +Features are separated in various sections depending on if you opt for a Nix-store only image or a full NixOS image. + +### Common + +- arbitrary NixOS configuration +- automatic or bound disk size: `diskSize` parameter, `additionalSpace` can be set when `diskSize` is `auto` to add a constant of disk space +- multiple partition table layouts: EFI, legacy, legacy + GPT, hybrid, none through `partitionTableType` parameter +- OVMF or EFI firmwares and variables templates can be customized +- root filesystem `fsType` can be customized to whatever `mkfs.${fsType}` exist during operations +- root filesystem label can be customized, defaults to `nix-store` if it's a Nix store image, otherwise `nixpkgs/nixos` +- arbitrary code can be executed after disk image was produced with `postVM` +- the current nixpkgs can be realized as a channel in the disk image, which will change the hash of the image when the sources are updated +- additional store paths can be provided through `additionalPaths` + +### Full NixOS image + +- arbitrary contents with permissions can be placed in the target filesystem using `contents` +- a `/etc/nixpkgs/nixos/configuration.nix` can be provided through `configFile` +- bootloaders are supported +- EFI variables can be mutated during image production and the result is exposed in `$out` +- boot partition size when partition table is `efi` or `hybrid` + +### On bit-to-bit reproducibility + +Images are **NOT** deterministic, please do not hesitate to try to fix this, source of determinisms are (not exhaustive) : + +- bootloader installation have timestamps +- SQLite Nix store database contain registration times +- `/etc/shadow` is in a non-deterministic order + +A `deterministic` flag is available for best efforts determinism. + +## Usage + +To produce a Nix-store only image: +```nix +let + pkgs = import {}; + lib = pkgs.lib; + make-disk-image = import ; +in + make-disk-image { + inherit pkgs lib; + config = {}; + additionalPaths = [ ]; + format = "qcow2"; + onlyNixStore = true; + partitionTableType = "none"; + installBootLoader = false; + touchEFIVars = false; + diskSize = "auto"; + additionalSpace = "0M"; # Defaults to 512M. + copyChannel = false; + } +``` + +Some arguments can be left out, they are shown explicitly for the sake of the example. + +Building this derivation will provide a QCOW2 disk image containing only the Nix store and its registration information. + +To produce a NixOS installation image disk with UEFI and bootloader installed: +```nix +let + pkgs = import {}; + lib = pkgs.lib; + make-disk-image = import ; + evalConfig = import ; +in + make-disk-image { + inherit pkgs lib; + config = evalConfig { + modules = [ + { + fileSystems."/" = { device = "/dev/vda"; fsType = "ext4"; autoFormat = true; }; + boot.grub.device = "/dev/vda"; + } + ]; + }; + format = "qcow2"; + onlyNixStore = false; + partitionTableType = "legacy+gpt"; + installBootLoader = true; + touchEFIVars = true; + diskSize = "auto"; + additionalSpace = "0M"; # Defaults to 512M. + copyChannel = false; + } +``` + + diff --git a/third_party/nixpkgs/doc/builders/images/ocitools.section.md b/third_party/nixpkgs/doc/builders/images/ocitools.section.md index d3ab877678..c35f65bce0 100644 --- a/third_party/nixpkgs/doc/builders/images/ocitools.section.md +++ b/third_party/nixpkgs/doc/builders/images/ocitools.section.md @@ -34,4 +34,4 @@ buildContainer { - `mounts` specifies additional mount points chosen by the user. By default only a minimal set of necessary filesystems are mounted into the container (e.g procfs, cgroupfs) -- `readonly` makes the container\'s rootfs read-only if it is set to true. The default value is false `false`. +- `readonly` makes the container's rootfs read-only if it is set to true. The default value is false `false`. diff --git a/third_party/nixpkgs/doc/builders/packages/dlib.section.md b/third_party/nixpkgs/doc/builders/packages/dlib.section.md index 8f0aa86101..022195310a 100644 --- a/third_party/nixpkgs/doc/builders/packages/dlib.section.md +++ b/third_party/nixpkgs/doc/builders/packages/dlib.section.md @@ -4,7 +4,7 @@ ## Compiling without AVX support {#compiling-without-avx-support} -Especially older CPUs don\'t support [AVX](https://en.wikipedia.org/wiki/Advanced_Vector_Extensions) (Advanced Vector Extensions) instructions that are used by DLib to optimize their algorithms. +Especially older CPUs don't support [AVX](https://en.wikipedia.org/wiki/Advanced_Vector_Extensions) (Advanced Vector Extensions) instructions that are used by DLib to optimize their algorithms. On the affected hardware errors like `Illegal instruction` will occur. In those cases AVX support needs to be disabled: diff --git a/third_party/nixpkgs/doc/builders/special.xml b/third_party/nixpkgs/doc/builders/special.xml index 8902ce5c81..525eb71abf 100644 --- a/third_party/nixpkgs/doc/builders/special.xml +++ b/third_party/nixpkgs/doc/builders/special.xml @@ -7,4 +7,5 @@ + diff --git a/third_party/nixpkgs/doc/builders/special/darwin-builder.section.md b/third_party/nixpkgs/doc/builders/special/darwin-builder.section.md new file mode 100644 index 0000000000..96b1fcb507 --- /dev/null +++ b/third_party/nixpkgs/doc/builders/special/darwin-builder.section.md @@ -0,0 +1,60 @@ +# darwin.builder {#sec-darwin-builder} + +`darwin.builder` provides a way to bootstrap a Linux builder on a macOS machine. + +This requires macOS version 12.4 or later. + +This also requires that port 22 on your machine is free (since Nix does not +permit specifying a non-default SSH port for builders). + +You will also need to be a trusted user for your Nix installation. In other +words, your `/etc/nix/nix.conf` should have something like: + +``` +extra-trusted-users = +``` + +To launch the builder, run the following flake: + +```ShellSession +$ nix run nixpkgs#darwin.builder +``` + +That will prompt you to enter your `sudo` password: + +``` ++ sudo --reset-timestamp /nix/store/…-install-credentials.sh ./keys +Password: +``` + +… so that it can install a private key used to `ssh` into the build server. +After that the script will launch the virtual machine: + +``` +<<< Welcome to NixOS 22.11.20220901.1bd8d11 (aarch64) - ttyAMA0 >>> + +Run 'nixos-help' for the NixOS manual. + +nixos login: +``` + +> Note: When you need to stop the VM, type `Ctrl`-`a` + `c` to open the `qemu` +> prompt and then type `quit` followed by `Enter` + +To delegate builds to the remote builder, add the following options to your +`nix.conf` file: + +``` +# - Replace ${ARCH} with either aarch64 or x86_64 to match your host machine +# - Replace ${MAX_JOBS} with the maximum number of builds (pick 4 if you're not sure) +builders = ssh-ng://builder@localhost ${ARCH}-linux /etc/nix/builder_ed25519 ${MAX_JOBS} - - - c3NoLWVkMjU1MTkgQUFBQUMzTnphQzFsWkRJMU5URTVBQUFBSUpCV2N4Yi9CbGFxdDFhdU90RStGOFFVV3JVb3RpQzVxQkorVXVFV2RWQ2Igcm9vdEBuaXhvcwo=' + +# Not strictly necessary, but this will reduce your disk utilization +builders-use-substitutes = true +``` + +… and then restart your Nix daemon to apply the change: + +```ShellSession +$ sudo launchctl kickstart -k system/org.nixos.nix-daemon +``` diff --git a/third_party/nixpkgs/doc/contributing/coding-conventions.chapter.md b/third_party/nixpkgs/doc/contributing/coding-conventions.chapter.md index 275a3c7af5..f6a0970165 100644 --- a/third_party/nixpkgs/doc/contributing/coding-conventions.chapter.md +++ b/third_party/nixpkgs/doc/contributing/coding-conventions.chapter.md @@ -260,6 +260,10 @@ When in doubt, consider refactoring the `pkgs/` tree, e.g. creating new categori - `development/tools/build-managers` (e.g. `gnumake`) + - **If it’s a _language server_:** + + - `development/tools/language-servers` (e.g. `ccls` or `rnix-lsp`) + - **Else:** - `development/tools/misc` (e.g. `binutils`) diff --git a/third_party/nixpkgs/doc/contributing/reviewing-contributions.chapter.md b/third_party/nixpkgs/doc/contributing/reviewing-contributions.chapter.md index 0e6a0dd5b5..6685c5b60a 100644 --- a/third_party/nixpkgs/doc/contributing/reviewing-contributions.chapter.md +++ b/third_party/nixpkgs/doc/contributing/reviewing-contributions.chapter.md @@ -185,7 +185,7 @@ Sample template for a new module review is provided below. ##### Comments ``` -## Individual maintainer list {#reviewing-contributions-indvidual-maintainer-list} +## Individual maintainer list {#reviewing-contributions-individual-maintainer-list} When adding users to `maintainers/maintainer-list.nix`, the following checks should be performed: diff --git a/third_party/nixpkgs/doc/contributing/submitting-changes.chapter.md b/third_party/nixpkgs/doc/contributing/submitting-changes.chapter.md index e3b2990f84..96e2ecf970 100644 --- a/third_party/nixpkgs/doc/contributing/submitting-changes.chapter.md +++ b/third_party/nixpkgs/doc/contributing/submitting-changes.chapter.md @@ -199,7 +199,7 @@ It’s important to test any executables generated by a build when you change or ### Meets Nixpkgs contribution standards {#submitting-changes-contribution-standards} -The last checkbox is fits [CONTRIBUTING.md](https://github.com/NixOS/nixpkgs/blob/master/CONTRIBUTING.md). The contributing document has detailed information on standards the Nix community has for commit messages, reviews, licensing of contributions you make to the project, etc\... Everyone should read and understand the standards the community has for contributing before submitting a pull request. +The last checkbox is fits [CONTRIBUTING.md](https://github.com/NixOS/nixpkgs/blob/master/CONTRIBUTING.md). The contributing document has detailed information on standards the Nix community has for commit messages, reviews, licensing of contributions you make to the project, etc... Everyone should read and understand the standards the community has for contributing before submitting a pull request. ## Hotfixing pull requests {#submitting-changes-hotfixing-pull-requests} diff --git a/third_party/nixpkgs/doc/doc-support/default.nix b/third_party/nixpkgs/doc/doc-support/default.nix index 429c7a5fbe..ec180064c3 100644 --- a/third_party/nixpkgs/doc/doc-support/default.nix +++ b/third_party/nixpkgs/doc/doc-support/default.nix @@ -3,8 +3,22 @@ let inherit (pkgs) lib; inherit (lib) hasPrefix removePrefix; - locationsXml = import ./lib-function-locations.nix { inherit pkgs nixpkgs; }; - functionDocs = import ./lib-function-docs.nix { inherit locationsXml pkgs; }; + libsets = [ + { name = "asserts"; description = "assertion functions"; } + { name = "attrsets"; description = "attribute set functions"; } + { name = "strings"; description = "string manipulation functions"; } + { name = "versions"; description = "version string functions"; } + { name = "trivial"; description = "miscellaneous functions"; } + { name = "lists"; description = "list manipulation functions"; } + { name = "debug"; description = "debugging functions"; } + { name = "options"; description = "NixOS / nixpkgs option handling"; } + { name = "filesystem"; description = "filesystem functions"; } + { name = "sources"; description = "source filtering functions"; } + { name = "cli"; description = "command-line serialization functions"; } + ]; + + locationsXml = import ./lib-function-locations.nix { inherit pkgs nixpkgs libsets; }; + functionDocs = import ./lib-function-docs.nix { inherit locationsXml pkgs libsets; }; version = pkgs.lib.version; epub-xsl = pkgs.writeText "epub.xsl" '' diff --git a/third_party/nixpkgs/doc/doc-support/lib-function-docs.nix b/third_party/nixpkgs/doc/doc-support/lib-function-docs.nix index 64f5ed5684..d6fa08aa96 100644 --- a/third_party/nixpkgs/doc/doc-support/lib-function-docs.nix +++ b/third_party/nixpkgs/doc/doc-support/lib-function-docs.nix @@ -1,30 +1,32 @@ -# Generates the documentation for library functons via nixdoc. To add -# another library function file to this list, the include list in the -# file `doc/functions/library.xml` must also be updated. +# Generates the documentation for library functions via nixdoc. -{ pkgs ? import ./.. {}, locationsXml }: +{ pkgs, locationsXml, libsets }: with pkgs; stdenv.mkDerivation { name = "nixpkgs-lib-docs"; - src = ./../../lib; + src = ../../lib; buildInputs = [ nixdoc ]; installPhase = '' function docgen { - nixdoc -c "$1" -d "$2" -f "../lib/$1.nix" > "$out/$1.xml" + # TODO: wrap lib.$1 in , make nixdoc not escape it + nixdoc -c "$1" -d "lib.$1: $2" -f "$1.nix" > "$out/$1.xml" + echo "" >> "$out/index.xml" } - mkdir -p $out - ln -s ${locationsXml} $out/locations.xml + mkdir -p "$out" - docgen asserts 'Assert functions' - docgen attrsets 'Attribute-set functions' - docgen strings 'String manipulation functions' - docgen trivial 'Miscellaneous functions' - docgen lists 'List manipulation functions' - docgen debug 'Debugging functions' - docgen options 'NixOS / nixpkgs option handling' - docgen filesystem 'Filesystem functions' - docgen sources 'Source filtering functions' + cat > "$out/index.xml" << 'EOF' + + + EOF + + ${lib.concatMapStrings ({ name, description }: '' + docgen ${name} ${lib.escapeShellArg description} + '') libsets} + + echo "" >> "$out/index.xml" + + ln -s ${locationsXml} $out/locations.xml ''; } diff --git a/third_party/nixpkgs/doc/doc-support/lib-function-locations.nix b/third_party/nixpkgs/doc/doc-support/lib-function-locations.nix index 68edd27098..ae1123c63a 100644 --- a/third_party/nixpkgs/doc/doc-support/lib-function-locations.nix +++ b/third_party/nixpkgs/doc/doc-support/lib-function-locations.nix @@ -1,4 +1,4 @@ -{ pkgs ? (import ./.. { }), nixpkgs ? { }}: +{ pkgs, nixpkgs ? { }, libsets }: let revision = pkgs.lib.trivial.revisionWithDefault (nixpkgs.revision or "master"); @@ -16,9 +16,7 @@ let subsetname = subsetname; functions = libDefPos toplib.${subsetname}; }) - (builtins.filter - (name: builtins.isAttrs toplib.${name}) - (builtins.attrNames toplib)); + (builtins.map (x: x.name) libsets); nixpkgsLib = pkgs.lib; diff --git a/third_party/nixpkgs/doc/doc-support/parameters.xml b/third_party/nixpkgs/doc/doc-support/parameters.xml index 50ff25fe10..5b39d2f7f1 100644 --- a/third_party/nixpkgs/doc/doc-support/parameters.xml +++ b/third_party/nixpkgs/doc/doc-support/parameters.xml @@ -11,6 +11,7 @@ + diff --git a/third_party/nixpkgs/doc/functions/library.xml b/third_party/nixpkgs/doc/functions/library.xml index 0a8bae229f..788ea0b94f 100644 --- a/third_party/nixpkgs/doc/functions/library.xml +++ b/third_party/nixpkgs/doc/functions/library.xml @@ -8,25 +8,7 @@ Nixpkgs provides a standard library at pkgs.lib, or through import <nixpkgs/lib>. - - - - - - - - - - - - - - - - - - - + + diff --git a/third_party/nixpkgs/doc/functions/nix-gitignore.section.md b/third_party/nixpkgs/doc/functions/nix-gitignore.section.md index 2fb833b230..8eb4081d28 100644 --- a/third_party/nixpkgs/doc/functions/nix-gitignore.section.md +++ b/third_party/nixpkgs/doc/functions/nix-gitignore.section.md @@ -4,7 +4,7 @@ ## Usage {#sec-pkgs-nix-gitignore-usage} -`pkgs.nix-gitignore` exports a number of functions, but you\'ll most likely need either `gitignoreSource` or `gitignoreSourcePure`. As their first argument, they both accept either 1. a file with gitignore lines or 2. a string with gitignore lines, or 3. a list of either of the two. They will be concatenated into a single big string. +`pkgs.nix-gitignore` exports a number of functions, but you'll most likely need either `gitignoreSource` or `gitignoreSourcePure`. As their first argument, they both accept either 1. a file with gitignore lines or 2. a string with gitignore lines, or 3. a list of either of the two. They will be concatenated into a single big string. ```nix { pkgs ? import {} }: @@ -30,7 +30,7 @@ gitignoreSourcePure = gitignoreFilterSourcePure (_: _: true); gitignoreSource = gitignoreFilterSource (_: _: true); ``` -Those filter functions accept the same arguments the `builtins.filterSource` function would pass to its filters, thus `fn: gitignoreFilterSourcePure fn ""` should be extensionally equivalent to `filterSource`. The file is blacklisted if it\'s blacklisted by either your filter or the gitignoreFilter. +Those filter functions accept the same arguments the `builtins.filterSource` function would pass to its filters, thus `fn: gitignoreFilterSourcePure fn ""` should be extensionally equivalent to `filterSource`. The file is blacklisted if it's blacklisted by either your filter or the gitignoreFilter. If you want to make your own filter from scratch, you may use diff --git a/third_party/nixpkgs/doc/languages-frameworks/android.section.md b/third_party/nixpkgs/doc/languages-frameworks/android.section.md index 28128ead66..15b8d3839b 100644 --- a/third_party/nixpkgs/doc/languages-frameworks/android.section.md +++ b/third_party/nixpkgs/doc/languages-frameworks/android.section.md @@ -232,7 +232,6 @@ androidenv.emulateApp { platformVersion = "24"; abiVersion = "armeabi-v7a"; # mips, x86, x86_64 systemImageType = "default"; - useGoogleAPIs = false; app = ./MyApp.apk; package = "MyApp"; activity = "MainActivity"; diff --git a/third_party/nixpkgs/doc/languages-frameworks/beam.section.md b/third_party/nixpkgs/doc/languages-frameworks/beam.section.md index 65204757b4..63f49adccb 100644 --- a/third_party/nixpkgs/doc/languages-frameworks/beam.section.md +++ b/third_party/nixpkgs/doc/languages-frameworks/beam.section.md @@ -93,7 +93,7 @@ Practical steps: - run `mix2nix > mix_deps.nix` in the upstream repo. - pass `mixNixDeps = with pkgs; import ./mix_deps.nix { inherit lib beamPackages; };` as an argument to mixRelease. -If there are git depencencies. +If there are git dependencies. - You'll need to fix the version artificially in mix.exs and regenerate the mix.lock with fixed version (on upstream). This will enable you to run `mix2nix > mix_deps.nix`. - From the mix_deps.nix file, remove the dependencies that had git versions and pass them as an override to the import function. diff --git a/third_party/nixpkgs/doc/languages-frameworks/coq.section.md b/third_party/nixpkgs/doc/languages-frameworks/coq.section.md index a939a67f09..e359acb3a8 100644 --- a/third_party/nixpkgs/doc/languages-frameworks/coq.section.md +++ b/third_party/nixpkgs/doc/languages-frameworks/coq.section.md @@ -8,7 +8,7 @@ The Coq derivation is overridable through the `coq.override overrides`, where ov * `customOCamlPackages` (optional, defaults to `null`, which lets Coq choose a version automatically), which can be set to any of the ocaml packages attribute of `ocaml-ng` (such as `ocaml-ng.ocamlPackages_4_10` which is the default for Coq 8.11 for example). * `coq-version` (optional, defaults to the short version e.g. "8.10"), is a version number of the form "x.y" that indicates which Coq's version build behavior to mimic when using a source which is not a release. E.g. `coq.override { version = "d370a9d1328a4e1cdb9d02ee032f605a9d94ec7a"; coq-version = "8.10"; }`. -The associated package set can be optained using `mkCoqPackages coq`, where `coq` is the derivation to use. +The associated package set can be obtained using `mkCoqPackages coq`, where `coq` is the derivation to use. ## Coq packages attribute sets: `coqPackages` {#coq-packages-attribute-sets-coqpackages} diff --git a/third_party/nixpkgs/doc/languages-frameworks/cuda.section.md b/third_party/nixpkgs/doc/languages-frameworks/cuda.section.md index 27bae33bc7..6300904c61 100644 --- a/third_party/nixpkgs/doc/languages-frameworks/cuda.section.md +++ b/third_party/nixpkgs/doc/languages-frameworks/cuda.section.md @@ -38,7 +38,7 @@ want to target for in terms of SASS (real hardware) or PTX (JIT kernels). Nixpkgs tries to target support real architecture defaults based on the CUDA toolkit version with PTX support for future hardware. Experienced -users may optmize this configuration for a variety of reasons such as +users may optimize this configuration for a variety of reasons such as reducing binary size and compile time, supporting legacy hardware, or optimizing for specific hardware. diff --git a/third_party/nixpkgs/doc/languages-frameworks/cuelang.section.md b/third_party/nixpkgs/doc/languages-frameworks/cuelang.section.md index 93c94027ae..ef408c7bb1 100644 --- a/third_party/nixpkgs/doc/languages-frameworks/cuelang.section.md +++ b/third_party/nixpkgs/doc/languages-frameworks/cuelang.section.md @@ -37,9 +37,9 @@ pkgs.writeCueValidator ``` - The first parameter is the Cue schema file. -- The second paramter is an options parameter, currently, only: `document` can be passed. +- The second parameter is an options parameter, currently, only: `document` can be passed. -`document` : match your input data against this fragment of structure or definition, e.g. you may use the same schema file but differents documents based on the data you are validating. +`document` : match your input data against this fragment of structure or definition, e.g. you may use the same schema file but different documents based on the data you are validating. Another example, given the following `validator.nix` : ``` diff --git a/third_party/nixpkgs/doc/languages-frameworks/dotnet.section.md b/third_party/nixpkgs/doc/languages-frameworks/dotnet.section.md index 1baa135ae5..bfb193b1f0 100644 --- a/third_party/nixpkgs/doc/languages-frameworks/dotnet.section.md +++ b/third_party/nixpkgs/doc/languages-frameworks/dotnet.section.md @@ -121,7 +121,6 @@ in buildDotnetModule rec { dotnet-sdk = dotnetCorePackages.sdk_3_1; dotnet-runtime = dotnetCorePackages.net_5_0; - dotnetFlags = [ "--runtime linux-x64" ]; executables = [ "foo" ]; # This wraps "$out/lib/$pname/foo" to `$out/bin/foo`. executables = []; # Don't install any executables. diff --git a/third_party/nixpkgs/doc/languages-frameworks/hy.section.md b/third_party/nixpkgs/doc/languages-frameworks/hy.section.md index a851ff24df..49309e4819 100644 --- a/third_party/nixpkgs/doc/languages-frameworks/hy.section.md +++ b/third_party/nixpkgs/doc/languages-frameworks/hy.section.md @@ -4,10 +4,10 @@ ### Installation without packages {#installation-without-packages} -You can install `hy` via nix-env or by adding it to `configuration.nix` by reffering to it as a `hy` attribute. This kind of installation adds `hy` to your environment and it succesfully works with `python3`. +You can install `hy` via nix-env or by adding it to `configuration.nix` by referring to it as a `hy` attribute. This kind of installation adds `hy` to your environment and it successfully works with `python3`. ::: {.caution} -Packages that are installed with your python derivation, are not accesible by `hy` this way. +Packages that are installed with your python derivation, are not accessible by `hy` this way. ::: ### Installation with packages {#installation-with-packages} diff --git a/third_party/nixpkgs/doc/languages-frameworks/index.xml b/third_party/nixpkgs/doc/languages-frameworks/index.xml index 7df241436f..7d404643d3 100644 --- a/third_party/nixpkgs/doc/languages-frameworks/index.xml +++ b/third_party/nixpkgs/doc/languages-frameworks/index.xml @@ -3,7 +3,7 @@ xml:id="chap-language-support"> Languages and frameworks - The standard build environment makes it easy to build typical Autotools-based packages with very little code. Any other kind of package can be accomodated by overriding the appropriate phases of stdenv. However, there are specialised functions in Nixpkgs to easily build packages for other programming languages, such as Perl or Haskell. These are described in this chapter. + The standard build environment makes it easy to build typical Autotools-based packages with very little code. Any other kind of package can be accommodated by overriding the appropriate phases of stdenv. However, there are specialised functions in Nixpkgs to easily build packages for other programming languages, such as Perl or Haskell. These are described in this chapter. diff --git a/third_party/nixpkgs/doc/languages-frameworks/python.section.md b/third_party/nixpkgs/doc/languages-frameworks/python.section.md index c8aec2e1e9..ab5ba42895 100644 --- a/third_party/nixpkgs/doc/languages-frameworks/python.section.md +++ b/third_party/nixpkgs/doc/languages-frameworks/python.section.md @@ -605,7 +605,7 @@ been removed, in this case, it's recommended to use `pytestCheckHook`. `test` command for a `checkPhase` which runs `pytest`. This is also beneficial when a package may need many items disabled to run the test suite. -Using the example above, the analagous `pytestCheckHook` usage would be: +Using the example above, the analogous `pytestCheckHook` usage would be: ``` checkInputs = [ pytestCheckHook ]; @@ -624,7 +624,7 @@ Using the example above, the analagous `pytestCheckHook` usage would be: ]; ``` -This is expecially useful when tests need to be conditionally disabled, +This is especially useful when tests need to be conditionally disabled, for example: ``` diff --git a/third_party/nixpkgs/doc/languages-frameworks/rust.section.md b/third_party/nixpkgs/doc/languages-frameworks/rust.section.md index 3ede908fe0..ec703105e1 100644 --- a/third_party/nixpkgs/doc/languages-frameworks/rust.section.md +++ b/third_party/nixpkgs/doc/languages-frameworks/rust.section.md @@ -186,6 +186,23 @@ added. To find the correct hash, you can first use `lib.fakeSha256` or `lib.fakeHash` as a stub hash. Building the package (and thus the vendored dependencies) will then inform you of the correct hash. +For usage outside nixpkgs, `allowBuiltinFetchGit` could be used to +avoid having to specify `outputHashes`. For example: + +```nix +rustPlatform.buildRustPackage rec { + pname = "myproject"; + version = "1.0.0"; + + cargoLock = { + lockFile = ./Cargo.lock; + allowBuiltinFetchGit = true; + }; + + # ... +} +``` + ### Cargo features {#cargo-features} You can disable default features using `buildNoDefaultFeatures`, and @@ -319,7 +336,7 @@ The above are just guidelines, and exceptions may be granted on a case-by-case b However, please check if it's possible to disable a problematic subset of the test suite and leave a comment explaining your reasoning. -This can be achived with `--skip` in `checkFlags`: +This can be achieved with `--skip` in `checkFlags`: ```nix rustPlatform.buildRustPackage { diff --git a/third_party/nixpkgs/doc/old/cross.txt b/third_party/nixpkgs/doc/old/cross.txt index 11292edcca..0f958e772b 100644 --- a/third_party/nixpkgs/doc/old/cross.txt +++ b/third_party/nixpkgs/doc/old/cross.txt @@ -303,7 +303,7 @@ One of the compiler flags that GCC uses for this compiler is called X_CFLAGS. This is used by the Nix build process to set the dynamic linker, glibc in the case of i686-linux using the default Nix packages collection. -Obiously, since we need to compile libstc++ for arm-linux with uClibc linking +Obviously, since we need to compile libstc++ for arm-linux with uClibc linking will not be done correctly: you can't link object files built for arm-linux with a glibc built for i686-linux. diff --git a/third_party/nixpkgs/doc/stdenv/multiple-output.chapter.md b/third_party/nixpkgs/doc/stdenv/multiple-output.chapter.md index 65156816b9..c19d497ab6 100644 --- a/third_party/nixpkgs/doc/stdenv/multiple-output.chapter.md +++ b/third_party/nixpkgs/doc/stdenv/multiple-output.chapter.md @@ -29,7 +29,7 @@ NixOS provides two ways to select the outputs to install for packages listed in `nix-env` lacks an easy way to select the outputs to install. When installing a package, `nix-env` always installs the outputs listed in `meta.outputsToInstall`, even when the user explicitly selects an output. ::: {.warning} -`nix-env` silenty disregards the outputs selected by the user, and instead installs the outputs from `meta.outputsToInstall`. For example, +`nix-env` silently disregards the outputs selected by the user, and instead installs the outputs from `meta.outputsToInstall`. For example, ```ShellSession $ nix-env -iA nixpkgs.coreutils.info diff --git a/third_party/nixpkgs/doc/stdenv/stdenv.chapter.md b/third_party/nixpkgs/doc/stdenv/stdenv.chapter.md index e3d874ef50..c28bb26baa 100644 --- a/third_party/nixpkgs/doc/stdenv/stdenv.chapter.md +++ b/third_party/nixpkgs/doc/stdenv/stdenv.chapter.md @@ -719,11 +719,11 @@ If set, libraries and executables are not stripped. By default, they are. ##### `dontStripHost` {#var-stdenv-dontStripHost} -Like `dontStrip`, but only affects the `strip` command targetting the package’s host platform. Useful when supporting cross compilation, but otherwise feel free to ignore. +Like `dontStrip`, but only affects the `strip` command targeting the package’s host platform. Useful when supporting cross compilation, but otherwise feel free to ignore. ##### `dontStripTarget` {#var-stdenv-dontStripTarget} -Like `dontStrip`, but only affects the `strip` command targetting the packages’ target platform. Useful when supporting cross compilation, but otherwise feel free to ignore. +Like `dontStrip`, but only affects the `strip` command targeting the packages’ target platform. Useful when supporting cross compilation, but otherwise feel free to ignore. ##### `dontMoveSbin` {#var-stdenv-dontMoveSbin} diff --git a/third_party/nixpkgs/doc/using/configuration.chapter.md b/third_party/nixpkgs/doc/using/configuration.chapter.md index 0391af0f17..e657cb21c2 100644 --- a/third_party/nixpkgs/doc/using/configuration.chapter.md +++ b/third_party/nixpkgs/doc/using/configuration.chapter.md @@ -73,7 +73,7 @@ There are also two ways to try compiling a package which has been marked as unsu } ``` -The difference between a package being unsupported on some system and being broken is admittedly a bit fuzzy. If a program *ought* to work on a certain platform, but doesn't, the platform should be included in `meta.platforms`, but marked as broken with e.g. `meta.broken = !hostPlatform.isWindows`. Of course, this begs the question of what \"ought\" means exactly. That is left to the package maintainer. +The difference between a package being unsupported on some system and being broken is admittedly a bit fuzzy. If a program *ought* to work on a certain platform, but doesn't, the platform should be included in `meta.platforms`, but marked as broken with e.g. `meta.broken = !hostPlatform.isWindows`. Of course, this begs the question of what "ought" means exactly. That is left to the package maintainer. ## Installing unfree packages {#sec-allow-unfree} diff --git a/third_party/nixpkgs/lib/attrsets.nix b/third_party/nixpkgs/lib/attrsets.nix index 511d619a1d..9009feb87d 100644 --- a/third_party/nixpkgs/lib/attrsets.nix +++ b/third_party/nixpkgs/lib/attrsets.nix @@ -16,6 +16,8 @@ rec { Example: x = { a = { b = 3; }; } + # ["a" "b"] is equivalent to x.a.b + # 6 is a default value to return if the path does not exist in attrset attrByPath ["a" "b"] 6 x => 3 attrByPath ["z" "z"] 6 x @@ -23,6 +25,7 @@ rec { Type: attrByPath :: [String] -> Any -> AttrSet -> Any + */ attrByPath = # A list of strings representing the attribute path to return from `set` @@ -96,7 +99,7 @@ rec { => error: cannot find attribute `z.z' Type: - getAttrFromPath :: [String] -> AttrSet -> Value + getAttrFromPath :: [String] -> AttrSet -> Any */ getAttrFromPath = # A list of strings representing the attribute path to get from `set` @@ -109,10 +112,7 @@ rec { /* Map each attribute in the given set and merge them into a new attribute set. Type: - concatMapAttrs :: - (String -> a -> AttrSet) - -> AttrSet - -> AttrSet + concatMapAttrs :: (String -> a -> AttrSet) -> AttrSet -> AttrSet Example: concatMapAttrs @@ -168,8 +168,7 @@ rec { ] { a.b.c = 0; } => { a = { b = { d = 1; }; }; x = { y = "xy"; }; } - Type: - updateManyAttrsByPath :: [AttrSet] -> AttrSet -> AttrSet + Type: updateManyAttrsByPath :: [{ path :: [String], update :: (Any -> Any) }] -> AttrSet -> AttrSet */ updateManyAttrsByPath = let # When recursing into attributes, instead of updating the `path` of each @@ -252,6 +251,7 @@ rec { Example: attrValues {c = 3; a = 1; b = 2;} => [1 2 3] + Type: attrValues :: AttrSet -> [Any] */ @@ -341,6 +341,7 @@ rec { Type: foldAttrs :: (Any -> Any -> Any) -> Any -> [AttrSets] -> Any + */ foldAttrs = # A function, given a value and a collector combines the two. @@ -394,7 +395,7 @@ rec { { a = 2; b = 20; } ] Type: - cartesianProductOfSets :: AttrSet -> [AttrSet] + cartesianProductOfSets :: AttrSet -> [AttrSet] */ cartesianProductOfSets = # Attribute set with attributes that are lists of values @@ -413,7 +414,7 @@ rec { => { name = "some"; value = 6; } Type: - nameValuePair :: String -> Any -> AttrSet + nameValuePair :: String -> Any -> { name :: String, value :: Any } */ nameValuePair = # Attribute name @@ -600,7 +601,7 @@ rec { => { } Type: - optionalAttrs :: Bool -> AttrSet + optionalAttrs :: Bool -> AttrSet -> AttrSet */ optionalAttrs = # Condition under which the `as` attribute set is returned. @@ -646,7 +647,7 @@ rec { => { a = ["x" "y"]; b = ["z"] } Type: - zipAttrsWith :: (String -> [ Any ] -> Any) -> [ AttrSet ] -> AttrSet + zipAttrsWith :: (String -> [ Any ] -> Any) -> [ AttrSet ] -> AttrSet */ zipAttrsWith = builtins.zipAttrsWith or (f: sets: zipAttrsWithNames (concatMap attrNames sets) f sets); @@ -737,7 +738,7 @@ rec { } Type: - recursiveUpdate :: AttrSet -> AttrSet -> AttrSet + recursiveUpdate :: AttrSet -> AttrSet -> AttrSet */ recursiveUpdate = # Left attribute set of the merge. @@ -757,7 +758,7 @@ rec { matchAttrs :: AttrSet -> AttrSet -> Bool */ matchAttrs = - # Attribute set strucutre to match + # Attribute set structure to match pattern: # Attribute set to find patterns in attrs: @@ -795,6 +796,7 @@ rec { /* Turns a list of strings into a human-readable description of those strings represented as an attribute path. The result of this function is not intended to be machine-readable. + Create a new attribute set with `value` set at the nested attribute location specified in `attrPath`. Example: showAttrPath [ "foo" "10" "bar" ] @@ -831,11 +833,11 @@ rec { If the output does not exist, fallback to `.out` and then to the default. Example: - getOutput pkgs.openssl + getBin pkgs.openssl => "/nix/store/9rz8gxhzf8sw4kf2j2f1grr49w8zx5vj-openssl-1.0.1r" Type: - getOutput :: Derivation -> String + getBin :: Derivation -> String */ getBin = getOutput "bin"; @@ -844,11 +846,11 @@ rec { If the output does not exist, fallback to `.out` and then to the default. Example: - getOutput pkgs.openssl + getLib pkgs.openssl => "/nix/store/9rz8gxhzf8sw4kf2j2f1grr49w8zx5vj-openssl-1.0.1r-lib" Type: - getOutput :: Derivation -> String + getLib :: Derivation -> String */ getLib = getOutput "lib"; @@ -857,11 +859,11 @@ rec { If the output does not exist, fallback to `.out` and then to the default. Example: - getOutput pkgs.openssl + getDev pkgs.openssl => "/nix/store/9rz8gxhzf8sw4kf2j2f1grr49w8zx5vj-openssl-1.0.1r-dev" Type: - getOutput :: Derivation -> String + getDev :: Derivation -> String */ getDev = getOutput "dev"; @@ -870,15 +872,19 @@ rec { If the output does not exist, fallback to `.out` and then to the default. Example: - getOutput pkgs.openssl + getMan pkgs.openssl => "/nix/store/9rz8gxhzf8sw4kf2j2f1grr49w8zx5vj-openssl-1.0.1r-man" Type: - getOutput :: Derivation -> String + getMan :: Derivation -> String */ getMan = getOutput "man"; - /* Pick the outputs of packages to place in `buildInputs` */ + /* Pick the outputs of packages to place in `buildInputs` + + Type: chooseDevOutputs :: [Derivation] -> [String] + + */ chooseDevOutputs = # List of packages to pick `dev` outputs from drvs: @@ -900,6 +906,7 @@ rec { Type: recurseIntoAttrs :: AttrSet -> AttrSet + */ recurseIntoAttrs = # An attribute set to scan for derivations. @@ -909,7 +916,7 @@ rec { /* Undo the effect of recurseIntoAttrs. Type: - recurseIntoAttrs :: AttrSet -> AttrSet + dontRecurseIntoAttrs :: AttrSet -> AttrSet */ dontRecurseIntoAttrs = # An attribute set to not scan for derivations. @@ -919,7 +926,10 @@ rec { /* `unionOfDisjoint x y` is equal to `x // y // z` where the attrnames in `z` are the intersection of the attrnames in `x` and `y`, and all values `assert` with an error message. This - operator is commutative, unlike (//). */ + operator is commutative, unlike (//). + + Type: unionOfDisjoint :: AttrSet -> AttrSet -> AttrSet + */ unionOfDisjoint = x: y: let intersection = builtins.intersectAttrs x y; @@ -930,9 +940,10 @@ rec { in (x // y) // mask; - # deprecated + # DEPRECATED zipWithNames = zipAttrsWithNames; - # deprecated + + # DEPRECATED zip = builtins.trace "lib.zip is deprecated, use lib.zipAttrsWith instead" zipAttrsWith; } diff --git a/third_party/nixpkgs/lib/derivations.nix b/third_party/nixpkgs/lib/derivations.nix index 9a88087f2e..dce98b46dd 100644 --- a/third_party/nixpkgs/lib/derivations.nix +++ b/third_party/nixpkgs/lib/derivations.nix @@ -17,7 +17,7 @@ in situations below. For illustration and/or testing, we define derivation such that its - evaluation is very noticable. + evaluation is very noticeable. let derivation = throw "This won't be evaluated."; diff --git a/third_party/nixpkgs/lib/generators.nix b/third_party/nixpkgs/lib/generators.nix index c0fe69389e..4c9c2d1e98 100644 --- a/third_party/nixpkgs/lib/generators.nix +++ b/third_party/nixpkgs/lib/generators.nix @@ -342,7 +342,10 @@ rec { else "{" + introSpace + libStr.concatStringsSep introSpace (libAttr.mapAttrsToList (name: value: - "${libStr.escapeNixIdentifier name} = ${go (indent + " ") value};") v) + "${libStr.escapeNixIdentifier name} = ${ + builtins.addErrorContext "while evaluating an attribute `${name}`" + (go (indent + " ") value) + };") v) + outroSpace + "}" else abort "generators.toPretty: should never happen (v = ${v})"; in go ""; diff --git a/third_party/nixpkgs/lib/licenses.nix b/third_party/nixpkgs/lib/licenses.nix index 612cfba6c7..f54ab46435 100644 --- a/third_party/nixpkgs/lib/licenses.nix +++ b/third_party/nixpkgs/lib/licenses.nix @@ -969,6 +969,11 @@ in mkLicense lset) ({ fullName = "wxWindows Library Licence, Version 3.1"; }; + x11 = { + spdxId = "X11"; + fullName = "X11 License"; + }; + xfig = { fullName = "xfig"; url = "http://mcj.sourceforge.net/authors.html#xfig"; # https is broken diff --git a/third_party/nixpkgs/lib/modules.nix b/third_party/nixpkgs/lib/modules.nix index 8cc8d67d60..caabfee571 100644 --- a/third_party/nixpkgs/lib/modules.nix +++ b/third_party/nixpkgs/lib/modules.nix @@ -479,7 +479,7 @@ rec { ) (lib.functionArgs f); # Note: we append in the opposite order such that we can add an error - # context on the explicited arguments of "args" too. This update + # context on the explicit arguments of "args" too. This update # operator is used to make the "args@{ ... }: with args.lib;" notation # works. in f (args // extraArgs) diff --git a/third_party/nixpkgs/lib/options.nix b/third_party/nixpkgs/lib/options.nix index b13687576e..9425e803c0 100644 --- a/third_party/nixpkgs/lib/options.nix +++ b/third_party/nixpkgs/lib/options.nix @@ -104,8 +104,6 @@ rec { /* Creates an Option attribute set for an option that specifies the package a module should use for some purpose. - Type: mkPackageOption :: pkgs -> string -> { default :: [string], example :: null | string | [string] } -> option - The package is specified as a list of strings representing its attribute path in nixpkgs. Because of this, you need to pass nixpkgs itself as the first argument. @@ -116,6 +114,8 @@ rec { You can omit the default path if the name of the option is also attribute path in nixpkgs. + Type: mkPackageOption :: pkgs -> string -> { default :: [string], example :: null | string | [string] } -> option + Example: mkPackageOption pkgs "hello" { } => { _type = "option"; default = «derivation /nix/store/3r2vg51hlxj3cx5vscp0vkv60bqxkaq0-hello-2.10.drv»; defaultText = { ... }; description = "The hello package to use."; type = { ... }; } @@ -221,9 +221,10 @@ rec { optionAttrSetToDocList' = _: options: concatMap (opt: let + name = showOption opt.loc; docOption = rec { loc = opt.loc; - name = showOption opt.loc; + inherit name; description = opt.description or null; declarations = filter (x: x != unknownModule) opt.declarations; internal = opt.internal or false; @@ -234,8 +235,18 @@ rec { readOnly = opt.readOnly or false; type = opt.type.description or "unspecified"; } - // optionalAttrs (opt ? example) { example = renderOptionValue opt.example; } - // optionalAttrs (opt ? default) { default = renderOptionValue (opt.defaultText or opt.default); } + // optionalAttrs (opt ? example) { + example = + builtins.addErrorContext "while evaluating the example of option `${name}`" ( + renderOptionValue opt.example + ); + } + // optionalAttrs (opt ? default) { + default = + builtins.addErrorContext "while evaluating the default value of option `${name}`" ( + renderOptionValue (opt.defaultText or opt.default) + ); + } // optionalAttrs (opt ? relatedPackages && opt.relatedPackages != null) { inherit (opt) relatedPackages; }; subOptions = diff --git a/third_party/nixpkgs/lib/strings.nix b/third_party/nixpkgs/lib/strings.nix index 64bf5bbafd..20f6db08ce 100644 --- a/third_party/nixpkgs/lib/strings.nix +++ b/third_party/nixpkgs/lib/strings.nix @@ -185,7 +185,7 @@ rec { */ makeBinPath = makeSearchPathOutput "bin" "bin"; - /* Normalize path, removing extranous /s + /* Normalize path, removing extraneous /s Type: normalizePath :: string -> string @@ -281,7 +281,7 @@ rec { => [ ] stringToCharacters "abc" => [ "a" "b" "c" ] - stringToCharacters "💩" + stringToCharacters "🦄" => [ "�" "�" "�" "�" ] */ stringToCharacters = s: @@ -330,7 +330,7 @@ rec { */ escape = list: replaceStrings list (map (c: "\\${c}") list); - /* Escape occurence of the element of `list` in `string` by + /* Escape occurrence of the element of `list` in `string` by converting to its ASCII value and prefixing it with \\x. Only works for printable ascii characters. diff --git a/third_party/nixpkgs/lib/systems/architectures.nix b/third_party/nixpkgs/lib/systems/architectures.nix index ddc320d24e..94127fa90b 100644 --- a/third_party/nixpkgs/lib/systems/architectures.nix +++ b/third_party/nixpkgs/lib/systems/architectures.nix @@ -67,7 +67,7 @@ rec { # # Note: # - # - The succesors of `skylake` (`cannonlake`, `icelake`, etc) use `avx512` + # - The successors of `skylake` (`cannonlake`, `icelake`, etc) use `avx512` # which no current AMD Zen michroarch support. # - `znver1` uses `ABM`, `CLZERO`, `CX16`, `MWAITX`, and `SSE4A` which no # current Intel microarch support. diff --git a/third_party/nixpkgs/lib/systems/default.nix b/third_party/nixpkgs/lib/systems/default.nix index ca5186ca47..4c1e9d9f25 100644 --- a/third_party/nixpkgs/lib/systems/default.nix +++ b/third_party/nixpkgs/lib/systems/default.nix @@ -20,7 +20,7 @@ rec { # necessary. # # `parsed` is inferred from args, both because there are two options with one - # clearly prefered, and to prevent cycles. A simpler fixed point where the RHS + # clearly preferred, and to prevent cycles. A simpler fixed point where the RHS # always just used `final.*` would fail on both counts. elaborate = args': let args = if lib.isString args' then { system = args'; } @@ -62,7 +62,7 @@ rec { linker = /**/ if final.useLLVM or false then "lld" else if final.isDarwin then "cctools" - # "bfd" and "gold" both come from GNU binutils. The existance of Gold + # "bfd" and "gold" both come from GNU binutils. The existence of Gold # is why we use the more obscure "bfd" and not "binutils" for this # choice. else "bfd"; diff --git a/third_party/nixpkgs/lib/systems/flake-systems.nix b/third_party/nixpkgs/lib/systems/flake-systems.nix index 74124c32e8..b1988c6a4f 100644 --- a/third_party/nixpkgs/lib/systems/flake-systems.nix +++ b/third_party/nixpkgs/lib/systems/flake-systems.nix @@ -1,6 +1,6 @@ # See [RFC 46] for mandated platform support and ../../pkgs/stdenv for # implemented platform support. This list is mainly descriptive, i.e. all -# system doubles for platforms where nixpkgs can do native compiliation +# system doubles for platforms where nixpkgs can do native compilation # reasonably well are included. # # [RFC 46]: https://github.com/NixOS/rfcs/blob/master/rfcs/0046-platform-support-tiers.md diff --git a/third_party/nixpkgs/lib/tests/misc.nix b/third_party/nixpkgs/lib/tests/misc.nix index c719fcf5d4..faf2b96530 100644 --- a/third_party/nixpkgs/lib/tests/misc.nix +++ b/third_party/nixpkgs/lib/tests/misc.nix @@ -212,6 +212,21 @@ runTests { expected = [ "1" "2" "3" ]; }; + testPadVersionLess = { + expr = versions.pad 3 "1.2"; + expected = "1.2.0"; + }; + + testPadVersionLessExtra = { + expr = versions.pad 3 "1.3-rc1"; + expected = "1.3.0-rc1"; + }; + + testPadVersionMore = { + expr = versions.pad 3 "1.2.3.4"; + expected = "1.2.3"; + }; + testIsStorePath = { expr = let goodPath = diff --git a/third_party/nixpkgs/lib/tests/modules.sh b/third_party/nixpkgs/lib/tests/modules.sh index 75b316c972..cde4da6439 100755 --- a/third_party/nixpkgs/lib/tests/modules.sh +++ b/third_party/nixpkgs/lib/tests/modules.sh @@ -246,7 +246,7 @@ checkConfigError 'A definition for option .* is not of type .*' \ ## Freeform modules # Assigning without a declared option should work checkConfigOutput '^"24"$' config.value ./freeform-attrsOf.nix ./define-value-string.nix -# No freeform assigments shouldn't make it error +# No freeform assignments shouldn't make it error checkConfigOutput '^{ }$' config ./freeform-attrsOf.nix # but only if the type matches checkConfigError 'A definition for option .* is not of type .*' config.value ./freeform-attrsOf.nix ./define-value-list.nix diff --git a/third_party/nixpkgs/lib/types.nix b/third_party/nixpkgs/lib/types.nix index 270ac1748c..e7e8a99e57 100644 --- a/third_party/nixpkgs/lib/types.nix +++ b/third_party/nixpkgs/lib/types.nix @@ -558,15 +558,6 @@ rec { nestedTypes.elemType = elemType; }; - # TODO: drop this in the future: - loaOf = elemType: types.attrsOf elemType // { - name = "loaOf"; - deprecationMessage = "Mixing lists with attribute values is no longer" - + " possible; please use `types.attrsOf` instead. See" - + " https://github.com/NixOS/nixpkgs/issues/1800 for the motivation."; - nestedTypes.elemType = elemType; - }; - # Value of given type but with no merging (i.e. `uniq list`s are not concatenated). uniq = elemType: mkOptionType rec { name = "uniq"; diff --git a/third_party/nixpkgs/lib/versions.nix b/third_party/nixpkgs/lib/versions.nix index 0e9d81ac78..986e7e5f9b 100644 --- a/third_party/nixpkgs/lib/versions.nix +++ b/third_party/nixpkgs/lib/versions.nix @@ -46,4 +46,19 @@ rec { builtins.concatStringsSep "." (lib.take 2 (splitVersion v)); + /* Pad a version string with zeros to match the given number of components. + + Example: + pad 3 "1.2" + => "1.2.0" + pad 3 "1.3-rc1" + => "1.3.0-rc1" + pad 3 "1.2.3.4" + => "1.2.3" + */ + pad = n: version: let + numericVersion = lib.head (lib.splitString "-" version); + versionSuffix = lib.removePrefix numericVersion version; + in lib.concatStringsSep "." (lib.take n (lib.splitVersion numericVersion ++ lib.genList (_: "0") n)) + versionSuffix; + } diff --git a/third_party/nixpkgs/maintainers/maintainer-list.nix b/third_party/nixpkgs/maintainers/maintainer-list.nix index d51ea84e9e..8891e9861f 100644 --- a/third_party/nixpkgs/maintainers/maintainer-list.nix +++ b/third_party/nixpkgs/maintainers/maintainer-list.nix @@ -186,6 +186,12 @@ githubId = 7755101; name = "Aaron Andersen"; }; + aaqaishtyaq = { + email = "aaqaishtyaq@gmail.com"; + github = "aaqaishtyaq"; + githubId = 22131756; + name = "Aaqa Ishtyaq"; + }; aaronjanse = { email = "aaron@ajanse.me"; matrix = "@aaronjanse:matrix.org"; @@ -552,6 +558,12 @@ githubId = 43479487; name = "Titouan Biteau"; }; + alekseysidorov = { + email = "sauron1987@gmail.com"; + github = "alekseysidorov"; + githubId = 83360; + name = "Aleksey Sidorov"; + }; alerque = { email = "caleb@alerque.com"; github = "alerque"; @@ -1474,12 +1486,12 @@ }]; }; babariviere = { - email = "babathriviere@gmail.com"; + email = "me@babariviere.com"; github = "babariviere"; githubId = 12128029; name = "Bastien Rivière"; keys = [{ - fingerprint = "2F85 B362 B274 0012 37E2 81EE F202 AD3B 6EDF 4BD1"; + fingerprint = "74AA 9AB4 E6FF 872B 3C5A CB3E 3903 5CC0 B75D 1142"; }]; }; babbaj = { @@ -1695,6 +1707,15 @@ fingerprint = "D35E C9CE E631 638F F1D8 B401 6F0E 410D C3EE D02"; }]; }; + benjaminedwardwebb = { + name = "Ben Webb"; + email = "benjaminedwardwebb@gmail.com"; + github = "benjaminedwardwebb"; + githubId = 7118777; + keys = [{ + fingerprint = "E9A3 7864 2165 28CE 507C CA82 72EA BF75 C331 CD25"; + }]; + }; benley = { email = "benley@gmail.com"; github = "benley"; @@ -1728,12 +1749,6 @@ githubId = 442623; name = "Ben Pye"; }; - benwbooth = { - email = "benwbooth@gmail.com"; - github = "benwbooth"; - githubId = 75972; - name = "Ben Booth"; - }; berberman = { email = "berberman@yandex.com"; matrix = "@berberman:mozilla.org"; @@ -3932,6 +3947,16 @@ github = "edlimerkaj"; githubId = 71988351; }; + edrex = { + email = "ericdrex@gmail.com"; + github = "edrex"; + githubId = 14615; + keys = [{ + fingerprint = "AC47 2CCC 9867 4644 A9CF EB28 1C5C 1ED0 9F66 6824"; + }]; + matrix = "@edrex:matrix.org"; + name = "Eric Drechsel"; + }; ehllie = { email = "me@ehllie.xyz"; github = "ehllie"; @@ -4132,6 +4157,12 @@ githubId = 1365692; name = "Will Fancher"; }; + emattiza = { + email = "nix@mattiza.dev"; + github = "emattiza"; + githubId = 11719476; + name = "Evan Mattiza"; + }; emmabastas = { email = "emma.bastas@protonmail.com"; matrix = "@emmabastas:matrix.org"; @@ -5167,6 +5198,15 @@ githubId = 643494; name = "Cillian de Róiste"; }; + GoldsteinE = { + email = "root@goldstein.rs"; + github = "GoldsteinE"; + githubId = 12019211; + name = "Maximilian Siling"; + keys = [{ + fingerprint = "0BAF 2D87 CB43 746F 6237 2D78 DE60 31AB A0BB 269A"; + }]; + }; Gonzih = { email = "gonzih@gmail.com"; github = "Gonzih"; @@ -5553,6 +5593,12 @@ matrix = "@chris:netsoj.nl"; name = "Chris Josten"; }; + henkery = { + email = "jim@reupload.nl"; + github = "henkery"; + githubId = 1923309; + name = "Jim van Abkoude"; + }; henrikolsson = { email = "henrik@fixme.se"; github = "henrikolsson"; @@ -6053,6 +6099,12 @@ githubId = 37965; name = "Léo Stefanesco"; }; + indeednotjames = { + email = "nix@indeednotjames.com"; + github = "IndeedNotJames"; + githubId = 55066419; + name = "Emily Lange"; + }; infinidoge = { name = "Infinidoge"; email = "infinidoge@inx.moe"; @@ -8687,6 +8739,12 @@ githubId = 322214; name = "Mathnerd314"; }; + math-42 = { + email = "matheus.4200@gmail.com"; + github = "Math-42"; + githubId = 43853194; + name = "Matheus Vieira"; + }; matklad = { email = "aleksey.kladov@gmail.com"; github = "matklad"; @@ -11524,6 +11582,15 @@ githubId = 131856; name = "Arnout Engelen"; }; + rafael = { + name = "Rafael"; + email = "pr9@tuta.io"; + github = "rafa-dot-el"; + githubId = 104688305; + keys = [{ + fingerprint = "5F0B 3EAC F1F9 8155 0946 CDF5 469E 3255 A40D 2AD6"; + }]; + }; RaghavSood = { email = "r@raghavsood.com"; github = "RaghavSood"; @@ -12020,7 +12087,7 @@ name = "Russell O'Connor"; }; rodrgz = { - email = "rodrgz@proton.me"; + email = "erik@rodgz.com"; github = "rodrgz"; githubId = 53882428; name = "Erik Rodriguez"; @@ -15923,6 +15990,12 @@ github = "kuwii"; githubId = 10705175; }; + kkharji = { + name = "kkharji"; + email = "kkharji@protonmail.com"; + github = "kkharji"; + githubId = 65782666; + }; melias122 = { name = "Martin Elias"; email = "martin+nixpkgs@elias.sx"; diff --git a/third_party/nixpkgs/maintainers/scripts/haskell/hydra-report.hs b/third_party/nixpkgs/maintainers/scripts/haskell/hydra-report.hs index f7e5f57398..f5e8da1b3f 100755 --- a/third_party/nixpkgs/maintainers/scripts/haskell/hydra-report.hs +++ b/third_party/nixpkgs/maintainers/scripts/haskell/hydra-report.hs @@ -415,7 +415,7 @@ printBuildSummary <> ["","*:arrow_heading_up:: The number of packages that depend (directly or indirectly) on this package (if any). If two numbers are shown the first (lower) number considers only packages which currently have enabled hydra jobs, i.e. are not marked broken. The second (higher) number considers all packages.*",""] <> footer where - footer = ["*Report generated with [maintainers/scripts/haskell/hydra-report.hs](https://github.com/NixOS/nixpkgs/blob/haskell-updates/maintainers/scripts/haskell/hydra-report.sh)*"] + footer = ["*Report generated with [maintainers/scripts/haskell/hydra-report.hs](https://github.com/NixOS/nixpkgs/blob/haskell-updates/maintainers/scripts/haskell/hydra-report.hs)*"] totals = [ "#### Build summary" , "" diff --git a/third_party/nixpkgs/maintainers/scripts/haskell/regenerate-transitive-broken-packages.sh b/third_party/nixpkgs/maintainers/scripts/haskell/regenerate-transitive-broken-packages.sh index 94104e00ed..69455bfb68 100755 --- a/third_party/nixpkgs/maintainers/scripts/haskell/regenerate-transitive-broken-packages.sh +++ b/third_party/nixpkgs/maintainers/scripts/haskell/regenerate-transitive-broken-packages.sh @@ -1,5 +1,5 @@ #! /usr/bin/env nix-shell -#! nix-shell -i bash -p coreutils nix gnused -I nixpkgs=. +#! nix-shell -i bash -p coreutils jq nix -I nixpkgs=. config_file=pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml @@ -12,4 +12,4 @@ dont-distribute-packages: EOF echo "Regenerating list of transitive broken packages ..." -echo -e $(nix-instantiate --eval --strict maintainers/scripts/haskell/transitive-broken-packages.nix) | sed 's/\"//' | LC_ALL=C.UTF-8 sort -i >> $config_file +nix-instantiate --eval --option restrict-eval true -I . --strict --json maintainers/scripts/haskell/transitive-broken-packages.nix | jq -r . | LC_ALL=C.UTF-8 sort -i >> $config_file diff --git a/third_party/nixpkgs/maintainers/scripts/haskell/transitive-broken-packages.nix b/third_party/nixpkgs/maintainers/scripts/haskell/transitive-broken-packages.nix index d4ddaa9576..50ccb14577 100644 --- a/third_party/nixpkgs/maintainers/scripts/haskell/transitive-broken-packages.nix +++ b/third_party/nixpkgs/maintainers/scripts/haskell/transitive-broken-packages.nix @@ -12,5 +12,5 @@ let (getEvaluating (nixpkgs { config.allowBroken = true; }).haskellPackages); in '' - ${lib.concatMapStringsSep "\n" (x: " - ${x}") brokenDeps} + ${lib.concatMapStringsSep "\n" (x: " - ${x}") brokenDeps} '' diff --git a/third_party/nixpkgs/maintainers/scripts/luarocks-packages.csv b/third_party/nixpkgs/maintainers/scripts/luarocks-packages.csv index 49bc50ae61..d6d2a9da06 100644 --- a/third_party/nixpkgs/maintainers/scripts/luarocks-packages.csv +++ b/third_party/nixpkgs/maintainers/scripts/luarocks-packages.csv @@ -11,6 +11,7 @@ compat53,,,,0.7-1,,vcunat cosmo,,,,,,marsam coxpcall,,,,1.17.0-1,, cqueues,,,,,,vcunat +cyan,,,,,, cyrussasl,https://github.com/JorjBauer/lua-cyrussasl.git,,,,, digestif,https://github.com/astoff/digestif.git,,,0.2-1,5.3, dkjson,,,,,, @@ -99,6 +100,7 @@ sqlite,,,,,, std._debug,https://github.com/lua-stdlib/_debug.git,,,,, std.normalize,https://github.com/lua-stdlib/normalize.git,,,,, stdlib,,,,41.2.2,,vyp +teal-language-server,,,http://luarocks.org/dev,,, tl,,,,,,mephistophiles vstruct,https://github.com/ToxicFrog/vstruct.git,,,,, vusted,,,,,,figsoda diff --git a/third_party/nixpkgs/maintainers/team-list.nix b/third_party/nixpkgs/maintainers/team-list.nix index af6684a03f..b37d2d0a28 100644 --- a/third_party/nixpkgs/maintainers/team-list.nix +++ b/third_party/nixpkgs/maintainers/team-list.nix @@ -755,6 +755,7 @@ with lib.maintainers; { xfce = { members = [ romildo + muscaln ]; scope = "Maintain Xfce desktop environment and related packages."; shortName = "Xfce"; diff --git a/third_party/nixpkgs/nixos/doc/manual/administration/service-mgmt.chapter.md b/third_party/nixpkgs/nixos/doc/manual/administration/service-mgmt.chapter.md index bb0f9b62e9..674c737416 100644 --- a/third_party/nixpkgs/nixos/doc/manual/administration/service-mgmt.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/administration/service-mgmt.chapter.md @@ -75,7 +75,7 @@ necessary). Packages in Nixpkgs sometimes provide systemd units with them, usually in e.g `#pkg-out#/lib/systemd/`. Putting such a package in -`environment.systemPackages` doesn\'t make the service available to +`environment.systemPackages` doesn't make the service available to users or the system. In order to enable a systemd *system* service with provided upstream @@ -87,9 +87,9 @@ systemd.packages = [ pkgs.packagekit ]; Usually NixOS modules written by the community do the above, plus take care of other details. If a module was written for a service you are -interested in, you\'d probably need only to use +interested in, you'd probably need only to use `services.#name#.enable = true;`. These services are defined in -Nixpkgs\' [ `nixos/modules/` directory +Nixpkgs' [ `nixos/modules/` directory ](https://github.com/NixOS/nixpkgs/tree/master/nixos/modules). In case the service is simple enough, the above method should work, and start the service on boot. @@ -98,8 +98,8 @@ the service on boot. differently. Given a package that has a systemd unit file at `#pkg-out#/lib/systemd/user/`, using [](#opt-systemd.packages) will make you able to start the service via `systemctl --user start`, but it -won\'t start automatically on login. However, You can imperatively -enable it by adding the package\'s attribute to +won't start automatically on login. However, You can imperatively +enable it by adding the package's attribute to [](#opt-systemd.packages) and then do this (e.g): ```ShellSession @@ -113,7 +113,7 @@ If you are interested in a timer file, use `timers.target.wants` instead of `default.target.wants` in the 1st and 2nd command. Using `systemctl --user enable syncthing.service` instead of the above, -will work, but it\'ll use the absolute path of `syncthing.service` for +will work, but it'll use the absolute path of `syncthing.service` for the symlink, and this path is in `/nix/store/.../lib/systemd/user/`. Hence [garbage collection](#sec-nix-gc) will remove that file and you will wind up with a broken symlink in your systemd configuration, which diff --git a/third_party/nixpkgs/nixos/doc/manual/configuration/kubernetes.chapter.md b/third_party/nixpkgs/nixos/doc/manual/configuration/kubernetes.chapter.md index 5d7b083289..f39726090e 100644 --- a/third_party/nixpkgs/nixos/doc/manual/configuration/kubernetes.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/configuration/kubernetes.chapter.md @@ -17,7 +17,7 @@ services.kubernetes = { }; ``` -Another way is to assign cluster roles (\"master\" and/or \"node\") to +Another way is to assign cluster roles ("master" and/or "node") to the host. This enables apiserver, controllerManager, scheduler, addonManager, kube-proxy and etcd: diff --git a/third_party/nixpkgs/nixos/doc/manual/configuration/linux-kernel.chapter.md b/third_party/nixpkgs/nixos/doc/manual/configuration/linux-kernel.chapter.md index 7b84416a86..f5bce99dd1 100644 --- a/third_party/nixpkgs/nixos/doc/manual/configuration/linux-kernel.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/configuration/linux-kernel.chapter.md @@ -82,61 +82,68 @@ boot.kernel.sysctl."net.ipv4.tcp_keepalive_time" = 120; sets the kernel's TCP keepalive time to 120 seconds. To see the available parameters, run `sysctl -a`. -## Customize your kernel {#sec-linux-config-customizing} +## Building a custom kernel {#sec-linux-config-customizing} -The first step before compiling the kernel is to generate an appropriate -`.config` configuration. Either you pass your own config via the -`configfile` setting of `linuxKernel.manualConfig`: +You can customize the default kernel configuration by overriding the arguments for your kernel package: ```nix -custom-kernel = let base_kernel = linuxKernel.kernels.linux_4_9; - in super.linuxKernel.manualConfig { - inherit (super) stdenv hostPlatform; - inherit (base_kernel) src; - version = "${base_kernel.version}-custom"; - - configfile = /home/me/my_kernel_config; - allowImportFromDerivation = true; -}; -``` - -You can edit the config with this snippet (by default `make - menuconfig` won\'t work out of the box on nixos): - -```ShellSession -nix-shell -E 'with import {}; kernelToOverride.overrideAttrs (o: {nativeBuildInputs=o.nativeBuildInputs ++ [ pkg-config ncurses ];})' -``` - -or you can let nixpkgs generate the configuration. Nixpkgs generates it -via answering the interactive kernel utility `make config`. The answers -depend on parameters passed to -`pkgs/os-specific/linux/kernel/generic.nix` (which you can influence by -overriding `extraConfig, autoModules, - modDirVersion, preferBuiltin, extraConfig`). - -```nix -mptcp93.override ({ - name="mptcp-local"; - +pkgs.linux_latest.override { ignoreConfigErrors = true; autoModules = false; kernelPreferBuiltin = true; + extraStructuredConfig = with lib.kernel; { + DEBUG_KERNEL = yes; + FRAME_POINTER = yes; + KGDB = yes; + KGDB_SERIAL_CONSOLE = yes; + DEBUG_INFO = yes; + }; +} +``` - enableParallelBuilding = true; +See `pkgs/os-specific/linux/kernel/generic.nix` for details on how these arguments +affect the generated configuration. You can also build a custom version of Linux by calling +`pkgs.buildLinux` directly, which requires the `src` and `version` arguments to be specified. - extraConfig = '' - DEBUG_KERNEL y - FRAME_POINTER y - KGDB y - KGDB_SERIAL_CONSOLE y - DEBUG_INFO y - ''; -}); +To use your custom kernel package in your NixOS configuration, set + +```nix +boot.kernelPackages = pkgs.linuxPackagesFor yourCustomKernel; +``` + +Note that this method will use the common configuration defined in `pkgs/os-specific/linux/kernel/common-config.nix`, +which is suitable for a NixOS system. + +If you already have a generated configuration file, you can build a kernel that uses it with `pkgs.linuxManualConfig`: + +```nix +let + baseKernel = pkgs.linux_latest; +in pkgs.linuxManualConfig { + inherit (baseKernel) src modDirVersion; + version = "${baseKernel.version}-custom"; + configfile = ./my_kernel_config; + allowImportFromDerivation = true; +} +``` + +::: {.note} +The build will fail if `modDirVersion` does not match the source's `kernel.release` file, +so `modDirVersion` should remain tied to `src`. +::: + +To edit the `.config` file for Linux X.Y, proceed as follows: + +```ShellSession +$ nix-shell '' -A linuxKernel.kernels.linux_X_Y.configEnv +$ unpackPhase +$ cd linux-* +$ make nconfig ``` ## Developing kernel modules {#sec-linux-config-developing-modules} -When developing kernel modules it\'s often convenient to run +When developing kernel modules it's often convenient to run edit-compile-run loop as quickly as possible. See below snippet as an example of developing `mellanox` drivers. diff --git a/third_party/nixpkgs/nixos/doc/manual/configuration/profiles.chapter.md b/third_party/nixpkgs/nixos/doc/manual/configuration/profiles.chapter.md index b4ae1b7d3f..2c3dea27c1 100644 --- a/third_party/nixpkgs/nixos/doc/manual/configuration/profiles.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/configuration/profiles.chapter.md @@ -2,7 +2,7 @@ In some cases, it may be desirable to take advantage of commonly-used, predefined configurations provided by nixpkgs, but different from those -that come as default. This is a role fulfilled by NixOS\'s Profiles, +that come as default. This is a role fulfilled by NixOS's Profiles, which come as files living in ``. That is to say, expected usage is to add them to the imports list of your `/etc/configuration.nix` as such: diff --git a/third_party/nixpkgs/nixos/doc/manual/configuration/profiles/hardened.section.md b/third_party/nixpkgs/nixos/doc/manual/configuration/profiles/hardened.section.md index 9fb5e18c38..2e9bb196c0 100644 --- a/third_party/nixpkgs/nixos/doc/manual/configuration/profiles/hardened.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/configuration/profiles/hardened.section.md @@ -7,7 +7,7 @@ This includes a hardened kernel, and limiting the system information available to processes through the `/sys` and `/proc` filesystems. It also disables the User Namespaces feature of the kernel, which stops Nix from being able to build anything -(this particular setting can be overriden via +(this particular setting can be overridden via [](#opt-security.allowUserNamespaces)). See the [profile source](https://github.com/nixos/nixpkgs/tree/master/nixos/modules/profiles/hardened.nix) for further detail on which settings are altered. diff --git a/third_party/nixpkgs/nixos/doc/manual/configuration/user-mgmt.chapter.md b/third_party/nixpkgs/nixos/doc/manual/configuration/user-mgmt.chapter.md index 5c3aca3ef9..b35b38f6e9 100644 --- a/third_party/nixpkgs/nixos/doc/manual/configuration/user-mgmt.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/configuration/user-mgmt.chapter.md @@ -30,7 +30,7 @@ to your NixOS configuration. For instance, if you remove a user from [](#opt-users.users) and run nixos-rebuild, the user account will cease to exist. Also, imperative commands for managing users and groups, such as useradd, are no longer available. Passwords may still be -assigned by setting the user\'s +assigned by setting the user's [hashedPassword](#opt-users.users._name_.hashedPassword) option. A hashed password can be generated using `mkpasswd`. diff --git a/third_party/nixpkgs/nixos/doc/manual/configuration/wayland.chapter.md b/third_party/nixpkgs/nixos/doc/manual/configuration/wayland.chapter.md index a3a46aa3da..0f195bd665 100644 --- a/third_party/nixpkgs/nixos/doc/manual/configuration/wayland.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/configuration/wayland.chapter.md @@ -4,7 +4,7 @@ While X11 (see [](#sec-x11)) is still the primary display technology on NixOS, Wayland support is steadily improving. Where X11 separates the X Server and the window manager, on Wayland those are combined: a Wayland Compositor is like an X11 window manager, but also embeds the -Wayland \'Server\' functionality. This means it is sufficient to install +Wayland 'Server' functionality. This means it is sufficient to install a Wayland Compositor such as sway without separately enabling a Wayland server: diff --git a/third_party/nixpkgs/nixos/doc/manual/configuration/x-windows.chapter.md b/third_party/nixpkgs/nixos/doc/manual/configuration/x-windows.chapter.md index 27d1172388..f92403ed1c 100644 --- a/third_party/nixpkgs/nixos/doc/manual/configuration/x-windows.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/configuration/x-windows.chapter.md @@ -81,7 +81,7 @@ second password to login can be redundant. To enable auto-login, you need to define your default window manager and desktop environment. If you wanted no desktop environment and i3 as your -your window manager, you\'d define: +your window manager, you'd define: ```nix services.xserver.displayManager.defaultSession = "none+i3"; @@ -110,7 +110,7 @@ maintained but may perform worse in some cases (like in old chipsets). The second driver, `intel`, is specific to Intel GPUs, but not recommended by most distributions: it lacks several modern features (for -example, it doesn\'t support Glamor) and the package hasn\'t been +example, it doesn't support Glamor) and the package hasn't been officially updated since 2015. The results vary depending on the hardware, so you may have to try both @@ -162,7 +162,7 @@ with other kernel modules. AMD provides a proprietary driver for its graphics cards that is not enabled by default because it's not Free Software, is often broken in -nixpkgs and as of this writing doesn\'t offer more features or +nixpkgs and as of this writing doesn't offer more features or performance. If you still want to use it anyway, you need to explicitly set: @@ -215,7 +215,7 @@ US layout, with an additional layer to type some greek symbols by pressing the right-alt key. Create a file called `us-greek` with the following content (under a -directory called `symbols`; it\'s an XKB peculiarity that will help with +directory called `symbols`; it's an XKB peculiarity that will help with testing): ```nix @@ -249,7 +249,7 @@ The name (after `extraLayouts.`) should match the one given to the Applying this customization requires rebuilding several packages, and a broken XKB file can lead to the X session crashing at login. Therefore, -you\'re strongly advised to **test your layout before applying it**: +you're strongly advised to **test your layout before applying it**: ```ShellSession $ nix-shell -p xorg.xkbcomp @@ -313,8 +313,8 @@ prefer to keep the layout definitions inside the NixOS configuration. Unfortunately, the Xorg server does not (currently) support setting a keymap directly but relies instead on XKB rules to select the matching -components (keycodes, types, \...) of a layout. This means that -components other than symbols won\'t be loaded by default. As a +components (keycodes, types, ...) of a layout. This means that +components other than symbols won't be loaded by default. As a workaround, you can set the keymap using `setxkbmap` at the start of the session with: @@ -323,7 +323,7 @@ services.xserver.displayManager.sessionCommands = "setxkbmap -keycodes media"; ``` If you are manually starting the X server, you should set the argument -`-xkbdir /etc/X11/xkb`, otherwise X won\'t find your layout files. For +`-xkbdir /etc/X11/xkb`, otherwise X won't find your layout files. For example with `xinit` run ```ShellSession diff --git a/third_party/nixpkgs/nixos/doc/manual/configuration/xfce.chapter.md b/third_party/nixpkgs/nixos/doc/manual/configuration/xfce.chapter.md index ee60d465e3..c331e63cfe 100644 --- a/third_party/nixpkgs/nixos/doc/manual/configuration/xfce.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/configuration/xfce.chapter.md @@ -31,8 +31,8 @@ enabled. To enable Thunar without enabling Xfce, use the configuration option [](#opt-programs.thunar.enable) instead of simply adding `pkgs.xfce.thunar` to [](#opt-environment.systemPackages). -If you\'d like to add extra plugins to Thunar, add them to -[](#opt-programs.thunar.plugins). You shouldn\'t just add them to +If you'd like to add extra plugins to Thunar, add them to +[](#opt-programs.thunar.plugins). You shouldn't just add them to [](#opt-environment.systemPackages). ## Troubleshooting {#sec-xfce-troubleshooting .unnumbered} @@ -46,7 +46,7 @@ Thunar:2410): GVFS-RemoteVolumeMonitor-WARNING **: remote volume monitor with db ``` This is caused by some needed GNOME services not running. This is all -fixed by enabling \"Launch GNOME services on startup\" in the Advanced +fixed by enabling "Launch GNOME services on startup" in the Advanced tab of the Session and Startup settings panel. Alternatively, you can run this command to do the same thing. diff --git a/third_party/nixpkgs/nixos/doc/manual/contributing-to-this-manual.chapter.md b/third_party/nixpkgs/nixos/doc/manual/contributing-to-this-manual.chapter.md index 26813d1042..5575998092 100644 --- a/third_party/nixpkgs/nixos/doc/manual/contributing-to-this-manual.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/contributing-to-this-manual.chapter.md @@ -1,6 +1,6 @@ # Contributing to this manual {#chap-contributing} -The DocBook and CommonMark sources of NixOS' manual are in the [nixos/doc/manual](https://github.com/NixOS/nixpkgs/tree/master/nixos/doc/manual) subdirectory of the [Nixpkgs](https://github.com/NixOS/nixpkgs) repository. +The [DocBook] and CommonMark sources of the NixOS manual are in the [nixos/doc/manual](https://github.com/NixOS/nixpkgs/tree/master/nixos/doc/manual) subdirectory of the [Nixpkgs](https://github.com/NixOS/nixpkgs) repository. You can quickly check your edits with the following: @@ -11,3 +11,25 @@ $ nix-build nixos/release.nix -A manual.x86_64-linux ``` If the build succeeds, the manual will be in `./result/share/doc/nixos/index.html`. + +**Contributing to the man pages** + +The man pages are written in [DocBook] which is XML. + +To see what your edits look like: + +```ShellSession +$ cd /path/to/nixpkgs +$ nix-build nixos/release.nix -A manpages.x86_64-linux +``` + +You can then read the man page you edited by running + +```ShellSession +$ man --manpath=result/share/man nixos-rebuild # Replace nixos-rebuild with the command whose manual you edited +``` + +If you're on a different architecture that's supported by NixOS (check nixos/release.nix) then replace `x86_64-linux` with the architecture. +`nix-build` will complain otherwise, but should also tell you which architecture you have + the supported ones. + +[DocBook]: https://en.wikipedia.org/wiki/DocBook diff --git a/third_party/nixpkgs/nixos/doc/manual/development/activation-script.section.md b/third_party/nixpkgs/nixos/doc/manual/development/activation-script.section.md index 1aee252fdd..c339258c6d 100644 --- a/third_party/nixpkgs/nixos/doc/manual/development/activation-script.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/development/activation-script.section.md @@ -34,7 +34,7 @@ read which is set to `dry-activate` when a dry activation is done. An activation script can write to special files instructing `switch-to-configuration` to restart/reload units. The script will take these -requests into account and will incorperate the unit configuration as described +requests into account and will incorporate the unit configuration as described above. This means that the activation script will "fake" a modified unit file and `switch-to-configuration` will act accordingly. By doing so, configuration like [systemd.services.\.restartIfChanged](#opt-systemd.services) is @@ -49,7 +49,7 @@ dry activation being `/run/nixos/dry-activation-restart-list` and `/run/nixos/dry-activation-reload-list`. Those files can contain newline-separated lists of unit names where duplicates are being ignored. These files are not create automatically and activation scripts must take the -possiblility into account that they have to create them first. +possibility into account that they have to create them first. ## NixOS snippets {#sec-activation-script-nixos-snippets} diff --git a/third_party/nixpkgs/nixos/doc/manual/development/option-declarations.section.md b/third_party/nixpkgs/nixos/doc/manual/development/option-declarations.section.md index 88617ab192..f89aae5730 100644 --- a/third_party/nixpkgs/nixos/doc/manual/development/option-declarations.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/development/option-declarations.section.md @@ -149,7 +149,7 @@ multiple modules, or as an alternative to related `enable` options. As an example, we will take the case of display managers. There is a central display manager module for generic display manager options and a -module file per display manager backend (sddm, gdm \...). +module file per display manager backend (sddm, gdm ...). There are two approaches we could take with this module structure: diff --git a/third_party/nixpkgs/nixos/doc/manual/development/option-types.section.md b/third_party/nixpkgs/nixos/doc/manual/development/option-types.section.md index 40b4d78b25..0e9c4a4d16 100644 --- a/third_party/nixpkgs/nixos/doc/manual/development/option-types.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/development/option-types.section.md @@ -92,11 +92,11 @@ merging is handled. : A free-form attribute set. ::: {.warning} - This type will be deprecated in the future because it doesn\'t + This type will be deprecated in the future because it doesn't recurse into attribute sets, silently drops earlier attribute - definitions, and doesn\'t discharge `lib.mkDefault`, `lib.mkIf` + definitions, and doesn't discharge `lib.mkDefault`, `lib.mkIf` and co. For allowing arbitrary attribute sets, prefer - `types.attrsOf types.anything` instead which doesn\'t have these + `types.attrsOf types.anything` instead which doesn't have these problems. ::: @@ -222,7 +222,7 @@ Submodules are detailed in [Submodule](#section-option-types-submodule). - *`specialArgs`* An attribute set of extra arguments to be passed to the module functions. The option `_module.args` should be used instead for most arguments since it allows overriding. - *`specialArgs`* should only be used for arguments that can\'t go + *`specialArgs`* should only be used for arguments that can't go through the module fixed-point, because of infinite recursion or other problems. An example is overriding the `lib` argument, because `lib` itself is used to define `_module.args`, which @@ -236,7 +236,7 @@ Submodules are detailed in [Submodule](#section-option-types-submodule). In such a case it would allow the option to be set with `the-submodule.config = "value"` instead of requiring `the-submodule.config.config = "value"`. This is because - only when modules *don\'t* set the `config` or `options` + only when modules *don't* set the `config` or `options` keys, all keys are interpreted as option definitions in the `config` section. Enabling this option implicitly puts all attributes in the `config` section. @@ -324,7 +324,7 @@ Composed types are types that take a type as parameter. `listOf : Type *`t1`* or type *`t2`*, e.g. `with types; either int str`. Multiple definitions cannot be merged. -`types.oneOf` \[ *`t1 t2`* \... \] +`types.oneOf` \[ *`t1 t2`* ... \] : Type *`t1`* or type *`t2`* and so forth, e.g. `with types; oneOf [ int str bool ]`. Multiple definitions cannot be @@ -345,7 +345,7 @@ that are handled like a separate module. It takes a parameter *`o`*, that should be a set, or a function returning a set with an `options` key defining the sub-options. Submodule option definitions are type-checked accordingly to the `options` declarations. -Of course, you can nest submodule option definitons for even higher +Of course, you can nest submodule option definitions for even higher modularity. The option set can be defined directly diff --git a/third_party/nixpkgs/nixos/doc/manual/development/replace-modules.section.md b/third_party/nixpkgs/nixos/doc/manual/development/replace-modules.section.md index 0700a82004..0c0d6a7ac2 100644 --- a/third_party/nixpkgs/nixos/doc/manual/development/replace-modules.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/development/replace-modules.section.md @@ -2,7 +2,7 @@ Modules that are imported can also be disabled. The option declarations, config implementation and the imports of a disabled module will be -ignored, allowing another to take it\'s place. This can be used to +ignored, allowing another to take its place. This can be used to import a set of modules from another channel while keeping the rest of the system on a stable release. @@ -14,7 +14,7 @@ relative to the modules path (eg. \ for nixos). This example will replace the existing postgresql module with the version defined in the nixos-unstable channel while keeping the rest of the modules and packages from the original nixos channel. This only -overrides the module definition, this won\'t use postgresql from +overrides the module definition, this won't use postgresql from nixos-unstable unless explicitly configured to do so. ```nix @@ -35,7 +35,7 @@ nixos-unstable unless explicitly configured to do so. This example shows how to define a custom module as a replacement for an existing module. Importing this module will disable the original module -without having to know it\'s implementation details. +without having to know its implementation details. ```nix { config, lib, pkgs, ... }: diff --git a/third_party/nixpkgs/nixos/doc/manual/development/settings-options.section.md b/third_party/nixpkgs/nixos/doc/manual/development/settings-options.section.md index d569e23adb..334149d021 100644 --- a/third_party/nixpkgs/nixos/doc/manual/development/settings-options.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/development/settings-options.section.md @@ -9,10 +9,10 @@ can be declared. File formats can be separated into two categories: `{ foo = { bar = 10; }; }`. Other examples are INI, YAML and TOML. The following section explains the convention for these settings. -- Non-nix-representable ones: These can\'t be trivially mapped to a +- Non-nix-representable ones: These can't be trivially mapped to a subset of Nix syntax. Most generic programming languages are in this group, e.g. bash, since the statement `if true; then echo hi; fi` - doesn\'t have a trivial representation in Nix. + doesn't have a trivial representation in Nix. Currently there are no fixed conventions for these, but it is common to have a `configFile` option for setting the configuration file @@ -24,7 +24,7 @@ can be declared. File formats can be separated into two categories: an `extraConfig` option of type `lines` to allow arbitrary text after the autogenerated part of the file. -## Nix-representable Formats (JSON, YAML, TOML, INI, \...) {#sec-settings-nix-representable} +## Nix-representable Formats (JSON, YAML, TOML, INI, ...) {#sec-settings-nix-representable} By convention, formats like this are handled with a generic `settings` option, representing the full program configuration as a Nix value. The diff --git a/third_party/nixpkgs/nixos/doc/manual/development/writing-documentation.chapter.md b/third_party/nixpkgs/nixos/doc/manual/development/writing-documentation.chapter.md index 7c29f600d7..4986c9f0a8 100644 --- a/third_party/nixpkgs/nixos/doc/manual/development/writing-documentation.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/development/writing-documentation.chapter.md @@ -19,7 +19,7 @@ $ nix-shell nix-shell$ make ``` -Once you are done making modifications to the manual, it\'s important to +Once you are done making modifications to the manual, it's important to build it before committing. You can do that as follows: ```ShellSession diff --git a/third_party/nixpkgs/nixos/doc/manual/development/writing-modules.chapter.md b/third_party/nixpkgs/nixos/doc/manual/development/writing-modules.chapter.md index 0c41cbd3cb..fa24679b7f 100644 --- a/third_party/nixpkgs/nixos/doc/manual/development/writing-modules.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/development/writing-modules.chapter.md @@ -71,7 +71,7 @@ The meaning of each part is as follows. - This `imports` list enumerates the paths to other NixOS modules that should be included in the evaluation of the system configuration. A default set of modules is defined in the file `modules/module-list.nix`. - These don\'t need to be added in the import list. + These don't need to be added in the import list. - The attribute `options` is a nested set of *option declarations* (described below). diff --git a/third_party/nixpkgs/nixos/doc/manual/development/writing-nixos-tests.section.md b/third_party/nixpkgs/nixos/doc/manual/development/writing-nixos-tests.section.md index 2efe52b988..0d5bc76a2a 100644 --- a/third_party/nixpkgs/nixos/doc/manual/development/writing-nixos-tests.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/development/writing-nixos-tests.section.md @@ -165,7 +165,7 @@ The following methods are available on machine objects: `get_screen_text_variants` : Return a list of different interpretations of what is currently - visible on the machine\'s screen using optical character + visible on the machine's screen using optical character recognition. The number and order of the interpretations is not specified and is subject to change, but if no exception is raised at least one will be returned. @@ -177,7 +177,7 @@ The following methods are available on machine objects: `get_screen_text` : Return a textual representation of what is currently visible on the - machine\'s screen using optical character recognition. + machine's screen using optical character recognition. ::: {.note} This requires [`enableOCR`](#test-opt-enableOCR) to be set to `true`. @@ -298,7 +298,7 @@ The following methods are available on machine objects: : Wait until the supplied regular expressions match a line of the serial console output. This method is useful when OCR is not - possibile or accurate enough. + possible or accurate enough. `wait_for_window` @@ -350,8 +350,8 @@ machine.wait_for_unit("xautolock.service", "x-session-user") This applies to `systemctl`, `get_unit_info`, `wait_for_unit`, `start_job` and `stop_job`. -For faster dev cycles it\'s also possible to disable the code-linters -(this shouldn\'t be commited though): +For faster dev cycles it's also possible to disable the code-linters +(this shouldn't be committed though): ```nix { @@ -370,7 +370,7 @@ For faster dev cycles it\'s also possible to disable the code-linters This will produce a Nix warning at evaluation time. To fully disable the linter, wrap the test script in comment directives to disable the Black -linter directly (again, don\'t commit this within the Nixpkgs +linter directly (again, don't commit this within the Nixpkgs repository): ```nix diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/administration/cleaning-store.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/administration/cleaning-store.chapter.xml index 4243d2bf53..35dfaf30f4 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/administration/cleaning-store.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/administration/cleaning-store.chapter.xml @@ -23,7 +23,7 @@ $ nix-collect-garbage this unit automatically at certain points in time, for instance, every night at 03:15: - + nix.gc.automatic = true; nix.gc.dates = "03:15"; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/administration/container-networking.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/administration/container-networking.section.xml index 788a2b7b0a..a64053cdfa 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/administration/container-networking.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/administration/container-networking.section.xml @@ -31,7 +31,7 @@ $ ping -c1 10.233.4.2 address. This can be accomplished using the following configuration on the host: - + networking.nat.enable = true; networking.nat.internalInterfaces = ["ve-+"]; networking.nat.externalInterface = "eth0"; @@ -45,7 +45,7 @@ networking.nat.externalInterface = "eth0"; If you are using Network Manager, you need to explicitly prevent it from managing container interfaces: - + networking.networkmanager.unmanaged = [ "interface-name:ve-*" ]; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/administration/control-groups.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/administration/control-groups.chapter.xml index 8dab2c9d44..f78c058780 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/administration/control-groups.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/administration/control-groups.chapter.xml @@ -42,7 +42,7 @@ $ systemd-cgls process would get 1/1001 of the cgroup’s CPU time.) You can limit a service’s CPU share in configuration.nix: - + systemd.services.httpd.serviceConfig.CPUShares = 512; @@ -57,7 +57,7 @@ systemd.services.httpd.serviceConfig.CPUShares = 512; configuration.nix; for instance, to limit httpd.service to 512 MiB of RAM (excluding swap): - + systemd.services.httpd.serviceConfig.MemoryLimit = "512M"; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/administration/declarative-containers.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/administration/declarative-containers.section.xml index 4831c9c74e..efc3432ba1 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/administration/declarative-containers.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/administration/declarative-containers.section.xml @@ -6,7 +6,7 @@ following specifies that there shall be a container named database running PostgreSQL: - + containers.database = { config = { config, pkgs, ... }: @@ -29,7 +29,7 @@ containers.database = However, they cannot change the network configuration. You can give a container its own network as follows: - + containers.database = { privateNetwork = true; hostAddress = "192.168.100.10"; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/administration/service-mgmt.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/administration/service-mgmt.chapter.xml index 8b01b8f896..3b7bd6cd30 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/administration/service-mgmt.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/administration/service-mgmt.chapter.xml @@ -85,21 +85,21 @@ Jan 07 15:55:57 hagbard systemd[1]: Started PostgreSQL Server. Packages in Nixpkgs sometimes provide systemd units with them, usually in e.g #pkg-out#/lib/systemd/. Putting such a package in environment.systemPackages - doesn't make the service available to users or the system. + doesn’t make the service available to users or the system. In order to enable a systemd system service with provided upstream package, use (e.g): - + systemd.packages = [ pkgs.packagekit ]; Usually NixOS modules written by the community do the above, plus take care of other details. If a module was written for a service - you are interested in, you'd probably need only to use + you are interested in, you’d probably need only to use services.#name#.enable = true;. These services - are defined in Nixpkgs' + are defined in Nixpkgs’ nixos/modules/ directory . In case the service is simple enough, the above method should work, and start @@ -111,8 +111,8 @@ systemd.packages = [ pkgs.packagekit ]; unit file at #pkg-out#/lib/systemd/user/, using will make you able to start the service via systemctl --user start, - but it won't start automatically on login. However, You can - imperatively enable it by adding the package's attribute to + but it won’t start automatically on login. However, You can + imperatively enable it by adding the package’s attribute to and then do this (e.g): @@ -129,7 +129,7 @@ $ systemctl --user enable syncthing.service Using systemctl --user enable syncthing.service - instead of the above, will work, but it'll use the absolute path + instead of the above, will work, but it’ll use the absolute path of syncthing.service for the symlink, and this path is in /nix/store/.../lib/systemd/user/. Hence garbage collection will diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/abstractions.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/abstractions.section.xml index c71e23e34a..469e85979e 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/abstractions.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/abstractions.section.xml @@ -4,7 +4,7 @@ If you find yourself repeating yourself over and over, it’s time to abstract. Take, for instance, this Apache HTTP Server configuration: - + { services.httpd.virtualHosts = { "blog.example.org" = { @@ -29,7 +29,7 @@ the only difference is the document root directories. To prevent this duplication, we can use a let: - + let commonConfig = { adminAddr = "alice@example.org"; @@ -55,7 +55,7 @@ in You can write a let wherever an expression is allowed. Thus, you also could have written: - + { services.httpd.virtualHosts = let commonConfig = ...; in @@ -74,7 +74,7 @@ in of different virtual hosts, all with identical configuration except for the document root. This can be done as follows: - + { services.httpd.virtualHosts = let diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ad-hoc-network-config.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ad-hoc-network-config.section.xml index 035ee3122e..516022dc16 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ad-hoc-network-config.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ad-hoc-network-config.section.xml @@ -7,7 +7,7 @@ network configuration not covered by the existing NixOS modules. For instance, to statically configure an IPv6 address: - + networking.localCommands = '' ip -6 addr add 2001:610:685:1::1/64 dev eth0 diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/adding-custom-packages.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/adding-custom-packages.section.xml index 07f541666c..b1a1a8df32 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/adding-custom-packages.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/adding-custom-packages.section.xml @@ -28,7 +28,7 @@ $ cd nixpkgs manual. Finally, you add it to , e.g. - + environment.systemPackages = [ pkgs.my-package ]; @@ -45,7 +45,7 @@ environment.systemPackages = [ pkgs.my-package ]; Hello package directly in configuration.nix: - + environment.systemPackages = let my-hello = with pkgs; stdenv.mkDerivation rec { @@ -62,13 +62,13 @@ environment.systemPackages = Of course, you can also move the definition of my-hello into a separate Nix expression, e.g. - + environment.systemPackages = [ (import ./my-hello.nix) ]; where my-hello.nix contains: - + with import <nixpkgs> {}; # bring all of Nixpkgs into scope stdenv.mkDerivation rec { @@ -98,7 +98,7 @@ Hello, world! need to install appimage-run: add to /etc/nixos/configuration.nix - + environment.systemPackages = [ pkgs.appimage-run ]; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/config-file.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/config-file.section.xml index 9792116eb0..f6c8f70cff 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/config-file.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/config-file.section.xml @@ -3,7 +3,7 @@ The NixOS configuration file generally looks like this: - + { config, pkgs, ... }: { option definitions @@ -21,7 +21,7 @@ the name of an option and value is its value. For example, - + { config, pkgs, ... }: { services.httpd.enable = true; @@ -44,7 +44,7 @@ true. This means that the example above can also be written as: - + { config, pkgs, ... }: { services = { @@ -96,7 +96,7 @@ The option value `services.httpd.enable' in `/etc/nixos/configuration.nix' is no Strings are enclosed in double quotes, e.g. - + networking.hostName = "dexter"; @@ -107,7 +107,7 @@ networking.hostName = "dexter"; Multi-line strings can be enclosed in double single quotes, e.g. - + networking.extraHosts = '' 127.0.0.2 other-localhost @@ -135,7 +135,7 @@ networking.extraHosts = These can be true or false, e.g. - + networking.firewall.enable = true; networking.firewall.allowPing = false; @@ -149,7 +149,7 @@ networking.firewall.allowPing = false; For example, - + boot.kernel.sysctl."net.ipv4.tcp_keepalive_time" = 60; @@ -171,7 +171,7 @@ boot.kernel.sysctl."net.ipv4.tcp_keepalive_time" = 60; Sets were introduced above. They are name/value pairs enclosed in braces, as in the option definition - + fileSystems."/boot" = { device = "/dev/sda1"; fsType = "ext4"; @@ -189,13 +189,13 @@ fileSystems."/boot" = The important thing to note about lists is that list elements are separated by whitespace, like this: - + boot.kernelModules = [ "fuse" "kvm-intel" "coretemp" ]; List elements can be any other type, e.g. sets: - + swapDevices = [ { device = "/dev/disk/by-label/swap"; } ]; @@ -211,7 +211,7 @@ swapDevices = [ { device = "/dev/disk/by-label/swap"; } ]; through the function argument pkgs. Typical uses: - + environment.systemPackages = [ pkgs.thunderbird pkgs.emacs diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/customizing-packages.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/customizing-packages.section.xml index f78b5dc546..8026c4102b 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/customizing-packages.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/customizing-packages.section.xml @@ -22,7 +22,7 @@ a dependency on GTK 2. If you want to build it against GTK 3, you can specify that as follows: - + environment.systemPackages = [ (pkgs.emacs.override { gtk = pkgs.gtk3; }) ]; @@ -46,7 +46,7 @@ environment.systemPackages = [ (pkgs.emacs.override { gtk = pkgs.gtk3; }) ]; the package, such as the source code. For instance, if you want to override the source code of Emacs, you can say: - + environment.systemPackages = [ (pkgs.emacs.overrideAttrs (oldAttrs: { name = "emacs-25.0-pre"; @@ -72,7 +72,7 @@ environment.systemPackages = [ everything depend on your customised instance, you can apply a global override as follows: - + nixpkgs.config.packageOverrides = pkgs: { emacs = pkgs.emacs.override { gtk = pkgs.gtk3; }; }; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/declarative-packages.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/declarative-packages.section.xml index da31f18d92..bee310c2e3 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/declarative-packages.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/declarative-packages.section.xml @@ -7,7 +7,7 @@ adding the following line to configuration.nix enables the Mozilla Thunderbird email application: - + environment.systemPackages = [ pkgs.thunderbird ]; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/file-systems.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/file-systems.chapter.xml index 71441d8b4a..e5285c7975 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/file-systems.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/file-systems.chapter.xml @@ -7,7 +7,7 @@ /dev/disk/by-label/data onto the mount point /data: - + fileSystems."/data" = { device = "/dev/disk/by-label/data"; fsType = "ext4"; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/firewall.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/firewall.section.xml index 24c19bb1c6..6e1ffab72c 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/firewall.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/firewall.section.xml @@ -6,14 +6,14 @@ both IPv4 and IPv6 traffic. It is enabled by default. It can be disabled as follows: - + networking.firewall.enable = false; If the firewall is enabled, you can open specific TCP ports to the outside world: - + networking.firewall.allowedTCPPorts = [ 80 443 ]; @@ -26,7 +26,7 @@ networking.firewall.allowedTCPPorts = [ 80 443 ]; To open ranges of TCP ports: - + networking.firewall.allowedTCPPortRanges = [ { from = 4000; to = 4007; } { from = 8000; to = 8010; } diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/gpu-accel.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/gpu-accel.chapter.xml index 90d2c17e12..c95d3dc865 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/gpu-accel.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/gpu-accel.chapter.xml @@ -62,7 +62,7 @@ Platform Vendor Advanced Micro Devices, Inc. enables OpenCL support: - + hardware.opengl.extraPackages = [ rocm-opencl-icd ]; @@ -85,7 +85,7 @@ hardware.opengl.extraPackages = [ enable OpenCL support. For example, for Gen8 and later GPUs, the following configuration can be used: - + hardware.opengl.extraPackages = [ intel-compute-runtime ]; @@ -162,7 +162,7 @@ GPU1: makes amdvlk the default driver and hides radv and lavapipe from the device list. A specific driver can be forced as follows: - + hardware.opengl.extraPackages = [ pkgs.amdvlk ]; @@ -206,7 +206,7 @@ $ nix-shell -p libva-utils --run vainfo Modern Intel GPUs use the iHD driver, which can be installed with: - + hardware.opengl.extraPackages = [ intel-media-driver ]; @@ -215,7 +215,7 @@ hardware.opengl.extraPackages = [ Older Intel GPUs use the i965 driver, which can be installed with: - + hardware.opengl.extraPackages = [ vaapiIntel ]; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ipv4-config.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ipv4-config.section.xml index 047ba2165f..49ec6f5952 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ipv4-config.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ipv4-config.section.xml @@ -6,7 +6,7 @@ interfaces. However, you can configure an interface manually as follows: - + networking.interfaces.eth0.ipv4.addresses = [ { address = "192.168.1.2"; prefixLength = 24; @@ -16,7 +16,7 @@ networking.interfaces.eth0.ipv4.addresses = [ { Typically you’ll also want to set a default gateway and set of name servers: - + networking.defaultGateway = "192.168.1.1"; networking.nameservers = [ "8.8.8.8" ]; @@ -32,7 +32,7 @@ networking.nameservers = [ "8.8.8.8" ]; The host name is set using : - + networking.hostName = "cartman"; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ipv6-config.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ipv6-config.section.xml index 137c3d772a..2adb106226 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ipv6-config.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ipv6-config.section.xml @@ -10,21 +10,21 @@ . You can disable IPv6 support globally by setting: - + networking.enableIPv6 = false; You can disable IPv6 on a single interface using a normal sysctl (in this example, we use interface eth0): - + boot.kernel.sysctl."net.ipv6.conf.eth0.disable_ipv6" = true; As with IPv4 networking interfaces are automatically configured via DHCPv6. You can configure an interface manually: - + networking.interfaces.eth0.ipv6.addresses = [ { address = "fe00:aa:bb:cc::2"; prefixLength = 64; @@ -34,7 +34,7 @@ networking.interfaces.eth0.ipv6.addresses = [ { For configuring a gateway, optionally with explicitly specified interface: - + networking.defaultGateway6 = { address = "fe00::1"; interface = "enp0s3"; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/kubernetes.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/kubernetes.chapter.xml index 1de19f64bd..da9ba323f1 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/kubernetes.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/kubernetes.chapter.xml @@ -10,7 +10,7 @@ way is to enable and configure cluster components appropriately by hand: - + services.kubernetes = { apiserver.enable = true; controllerManager.enable = true; @@ -21,24 +21,24 @@ services.kubernetes = { }; - Another way is to assign cluster roles ("master" and/or - "node") to the host. This enables apiserver, + Another way is to assign cluster roles (master and/or + node) to the host. This enables apiserver, controllerManager, scheduler, addonManager, kube-proxy and etcd: - + services.kubernetes.roles = [ "master" ]; While this will enable the kubelet and kube-proxy only: - + services.kubernetes.roles = [ "node" ]; Assigning both the master and node roles is usable if you want a single node Kubernetes cluster for dev or testing purposes: - + services.kubernetes.roles = [ "master" "node" ]; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/linux-kernel.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/linux-kernel.chapter.xml index dd570e1d66..f889306d51 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/linux-kernel.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/linux-kernel.chapter.xml @@ -5,7 +5,7 @@ option boot.kernelPackages. For instance, this selects the Linux 3.10 kernel: - + boot.kernelPackages = pkgs.linuxKernel.packages.linux_3_10; @@ -48,7 +48,7 @@ zcat /proc/config.gz ). For instance, to enable support for the kernel debugger KGDB: - + nixpkgs.config.packageOverrides = pkgs: pkgs.lib.recursiveUpdate pkgs { linuxKernel.kernels.linux_5_10 = pkgs.linuxKernel.kernels.linux_5_10.override { extraConfig = '' @@ -69,7 +69,7 @@ nixpkgs.config.packageOverrides = pkgs: pkgs.lib.recursiveUpdate pkgs { automatically by udev. You can force a module to be loaded via , e.g. - + boot.kernelModules = [ "fuse" "kvm-intel" "coretemp" ]; @@ -77,7 +77,7 @@ boot.kernelModules = [ "fuse" "kvm-intel" "coretemp&quo root file system), you can use : - + boot.initrd.kernelModules = [ "cifs" ]; @@ -88,7 +88,7 @@ boot.initrd.kernelModules = [ "cifs" ]; Kernel runtime parameters can be set through , e.g. - + boot.kernel.sysctl."net.ipv4.tcp_keepalive_time" = 120; @@ -96,65 +96,82 @@ boot.kernel.sysctl."net.ipv4.tcp_keepalive_time" = 120; available parameters, run sysctl -a.
- Customize your kernel + Building a custom kernel - The first step before compiling the kernel is to generate an - appropriate .config configuration. Either you - pass your own config via the configfile setting - of linuxKernel.manualConfig: + You can customize the default kernel configuration by overriding + the arguments for your kernel package: - -custom-kernel = let base_kernel = linuxKernel.kernels.linux_4_9; - in super.linuxKernel.manualConfig { - inherit (super) stdenv hostPlatform; - inherit (base_kernel) src; - version = "${base_kernel.version}-custom"; - - configfile = /home/me/my_kernel_config; - allowImportFromDerivation = true; -}; - - - You can edit the config with this snippet (by default - make menuconfig won't work out of the box on - nixos): - - -nix-shell -E 'with import <nixpkgs> {}; kernelToOverride.overrideAttrs (o: {nativeBuildInputs=o.nativeBuildInputs ++ [ pkg-config ncurses ];})' - - - or you can let nixpkgs generate the configuration. Nixpkgs - generates it via answering the interactive kernel utility - make config. The answers depend on parameters - passed to - pkgs/os-specific/linux/kernel/generic.nix - (which you can influence by overriding - extraConfig, autoModules, modDirVersion, preferBuiltin, extraConfig). - - -mptcp93.override ({ - name="mptcp-local"; - + +pkgs.linux_latest.override { ignoreConfigErrors = true; autoModules = false; kernelPreferBuiltin = true; - - enableParallelBuilding = true; - - extraConfig = '' - DEBUG_KERNEL y - FRAME_POINTER y - KGDB y - KGDB_SERIAL_CONSOLE y - DEBUG_INFO y - ''; -}); + extraStructuredConfig = with lib.kernel; { + DEBUG_KERNEL = yes; + FRAME_POINTER = yes; + KGDB = yes; + KGDB_SERIAL_CONSOLE = yes; + DEBUG_INFO = yes; + }; +} + + + See pkgs/os-specific/linux/kernel/generic.nix + for details on how these arguments affect the generated + configuration. You can also build a custom version of Linux by + calling pkgs.buildLinux directly, which + requires the src and version + arguments to be specified. + + + To use your custom kernel package in your NixOS configuration, set + + +boot.kernelPackages = pkgs.linuxPackagesFor yourCustomKernel; + + + Note that this method will use the common configuration defined in + pkgs/os-specific/linux/kernel/common-config.nix, + which is suitable for a NixOS system. + + + If you already have a generated configuration file, you can build + a kernel that uses it with + pkgs.linuxManualConfig: + + +let + baseKernel = pkgs.linux_latest; +in pkgs.linuxManualConfig { + inherit (baseKernel) src modDirVersion; + version = "${baseKernel.version}-custom"; + configfile = ./my_kernel_config; + allowImportFromDerivation = true; +} + + + + The build will fail if modDirVersion does not + match the source’s kernel.release file, so + modDirVersion should remain tied to + src. + + + + To edit the .config file for Linux X.Y, proceed + as follows: + + +$ nix-shell '<nixpkgs>' -A linuxKernel.kernels.linux_X_Y.configEnv +$ unpackPhase +$ cd linux-* +$ make nconfig
Developing kernel modules - When developing kernel modules it's often convenient to run + When developing kernel modules it’s often convenient to run edit-compile-run loop as quickly as possible. See below snippet as an example of developing mellanox drivers. @@ -181,7 +198,7 @@ $ make -C $dev/lib/modules/*/build M=$(pwd)/drivers/net/ethernet/mellanox module available kernel version that is supported by ZFS like this: - + { boot.kernelPackages = pkgs.zfs.latestCompatibleLinuxPackages; } diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/luks-file-systems.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/luks-file-systems.section.xml index 42b766eba9..144a5aceca 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/luks-file-systems.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/luks-file-systems.section.xml @@ -30,7 +30,7 @@ Enter passphrase for /dev/disk/by-uuid/3f6b0024-3a44-4fde-a43a-767b872abe5d: *** at boot time as /, add the following to configuration.nix: - + boot.initrd.luks.devices.crypted.device = "/dev/disk/by-uuid/3f6b0024-3a44-4fde-a43a-767b872abe5d"; fileSystems."/".device = "/dev/mapper/crypted"; @@ -39,7 +39,7 @@ fileSystems."/".device = "/dev/mapper/crypted"; located on an encrypted partition, it is necessary to add the following grub option: - + boot.loader.grub.enableCryptodisk = true;
@@ -67,7 +67,7 @@ Added to key to device /dev/sda2, slot: 2 compatible key, add the following to configuration.nix: - + boot.initrd.luks.fido2Support = true; boot.initrd.luks.devices."/dev/sda2".fido2.credential = "f1d00200108b9d6e849a8b388da457688e3dd653b4e53770012d8f28e5d3b269865038c346802f36f3da7278b13ad6a3bb6a1452e24ebeeaa24ba40eef559b1b287d2a2f80b7"; @@ -77,7 +77,7 @@ boot.initrd.luks.devices."/dev/sda2".fido2.credential = "f1d00200 protected, such as Trezor. - + boot.initrd.luks.devices."/dev/sda2".fido2.passwordLess = true;
diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/modularity.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/modularity.section.xml index a7688090fc..987b2fc43c 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/modularity.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/modularity.section.xml @@ -14,7 +14,7 @@ other modules by including them from configuration.nix, e.g.: - + { config, pkgs, ... }: { imports = [ ./vpn.nix ./kde.nix ]; @@ -28,7 +28,7 @@ vpn.nix and kde.nix. The latter might look like this: - + { config, pkgs, ... }: { services.xserver.enable = true; @@ -50,7 +50,7 @@ you want it to appear first, you can use mkBefore: - + boot.kernelModules = mkBefore [ "kvm-intel" ]; @@ -70,7 +70,7 @@ The unique option `services.httpd.adminAddr' is defined multiple times, in `/etc When that happens, it’s possible to force one definition take precedence over the others: - + services.httpd.adminAddr = pkgs.lib.mkForce "bob@example.org"; @@ -93,7 +93,7 @@ services.httpd.adminAddr = pkgs.lib.mkForce "bob@example.org"; is set to true somewhere else: - + { config, pkgs, ... }: { environment.systemPackages = @@ -137,7 +137,7 @@ nix-repl> map (x: x.hostName) config.services.httpd.virtualHosts below would have the same effect as importing a file which sets those options. - + { config, pkgs, ... }: let netConfig = hostName: { diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/network-manager.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/network-manager.section.xml index 8f0d6d680a..c49618b4b9 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/network-manager.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/network-manager.section.xml @@ -4,7 +4,7 @@ To facilitate network configuration, some desktop environments use NetworkManager. You can enable NetworkManager by setting: - + networking.networkmanager.enable = true; @@ -15,7 +15,7 @@ networking.networkmanager.enable = true; All users that should have permission to change network settings must belong to the networkmanager group: - + users.users.alice.extraGroups = [ "networkmanager" ]; @@ -36,7 +36,7 @@ users.users.alice.extraGroups = [ "networkmanager" ]; used together if desired. To do this you need to instruct NetworkManager to ignore those interfaces like: - + networking.networkmanager.unmanaged = [ "*" "except:type:wwan" "except:type:gsm" ]; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/profiles.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/profiles.chapter.xml index 6f5fc130c6..f3aacfc0a2 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/profiles.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/profiles.chapter.xml @@ -4,12 +4,12 @@ In some cases, it may be desirable to take advantage of commonly-used, predefined configurations provided by nixpkgs, but different from those that come as default. This is a role fulfilled - by NixOS's Profiles, which come as files living in + by NixOS’s Profiles, which come as files living in <nixpkgs/nixos/modules/profiles>. That is to say, expected usage is to add them to the imports list of your /etc/configuration.nix as such: - + imports = [ <nixpkgs/nixos/modules/profiles/profile-name.nix> ]; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/profiles/hardened.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/profiles/hardened.section.xml index 44c11786d9..1fd5a91798 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/profiles/hardened.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/profiles/hardened.section.xml @@ -9,7 +9,7 @@ available to processes through the /sys and /proc filesystems. It also disables the User Namespaces feature of the kernel, which stops Nix from being able to - build anything (this particular setting can be overriden via + build anything (this particular setting can be overridden via ). See the profile source for further detail on which settings are altered. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/renaming-interfaces.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/renaming-interfaces.section.xml index 88c9e624c8..fca99edcba 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/renaming-interfaces.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/renaming-interfaces.section.xml @@ -30,7 +30,7 @@ the interface with MAC address 52:54:00:12:01:01 using a netword link unit: - + systemd.network.links."10-wan" = { matchConfig.PermanentMACAddress = "52:54:00:12:01:01"; linkConfig.Name = "wan"; @@ -43,7 +43,7 @@ systemd.network.links."10-wan" = { Alternatively, we can use a plain old udev rule: - + services.udev.initrdRules = '' SUBSYSTEM=="net", ACTION=="add", DRIVERS=="?*", \ ATTR{address}=="52:54:00:12:01:01", KERNEL=="eth*", NAME="wan" diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ssh.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ssh.section.xml index 037418d8ea..a330457f51 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ssh.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/ssh.section.xml @@ -3,7 +3,7 @@ Secure shell (SSH) access to your machine can be enabled by setting: - + services.openssh.enable = true; @@ -16,7 +16,7 @@ services.openssh.enable = true; You can declaratively specify authorised RSA/DSA public keys for a user as follows: - + users.users.alice.openssh.authorizedKeys.keys = [ "ssh-dss AAAAB3NzaC1kc3MAAACBAPIkGWVEt4..." ]; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/sshfs-file-systems.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/sshfs-file-systems.section.xml index 5d74712f35..26984dd411 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/sshfs-file-systems.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/sshfs-file-systems.section.xml @@ -54,7 +54,7 @@ SHA256:yjxl3UbTn31fLWeyLYTAKYJPRmzknjQZoyG8gSNEoIE my-user@workstation fileSystems option. Here’s a typical setup: - + { system.fsPackages = [ pkgs.sshfs ]; @@ -80,7 +80,7 @@ SHA256:yjxl3UbTn31fLWeyLYTAKYJPRmzknjQZoyG8gSNEoIE my-user@workstation well, for example you can change the default SSH port or specify a jump proxy: - + { options = [ "ProxyJump=bastion@example.com" @@ -92,7 +92,7 @@ SHA256:yjxl3UbTn31fLWeyLYTAKYJPRmzknjQZoyG8gSNEoIE my-user@workstation It’s also possible to change the ssh command used by SSHFS to connect to the server. For example: - + { options = [ (builtins.replaceStrings [" "] ["\\040"] diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/subversion.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/subversion.chapter.xml index 794c2c34e3..4390fc54ab 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/subversion.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/subversion.chapter.xml @@ -25,7 +25,7 @@ Apache HTTP, setting appropriately: - + services.httpd.enable = true; services.httpd.adminAddr = ...; networking.firewall.allowedTCPPorts = [ 80 443 ]; @@ -40,7 +40,7 @@ networking.firewall.allowedTCPPorts = [ 80 443 ]; .authz file describing access permission, and AuthUserFile to the password file. - + services.httpd.extraModules = [ # note that order is *super* important here { name = "dav_svn"; path = "${pkgs.apacheHttpdPackages.subversion}/modules/mod_dav_svn.so"; } @@ -106,7 +106,7 @@ $ htpasswd -s PASSWORD_FILE USER_NAME ACCESS_FILE will look something like the following: - + [/] * = r diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/user-mgmt.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/user-mgmt.chapter.xml index a2d7d2a9f1..d61b248d5e 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/user-mgmt.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/user-mgmt.chapter.xml @@ -7,7 +7,7 @@ states that a user account named alice shall exist: - + users.users.alice = { isNormalUser = true; home = "/home/alice"; @@ -36,7 +36,7 @@ users.users.alice = { and run nixos-rebuild, the user account will cease to exist. Also, imperative commands for managing users and groups, such as useradd, are no longer available. - Passwords may still be assigned by setting the user's + Passwords may still be assigned by setting the user’s hashedPassword option. A hashed password can be generated using mkpasswd. @@ -45,7 +45,7 @@ users.users.alice = { A user ID (uid) is assigned automatically. You can also specify a uid manually by adding - + uid = 1000; @@ -55,7 +55,7 @@ uid = 1000; Groups can be specified similarly. The following states that a group named students shall exist: - + users.groups.students.gid = 1000; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/wayland.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/wayland.chapter.xml index 1e90d4f311..07892c875b 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/wayland.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/wayland.chapter.xml @@ -5,11 +5,12 @@ display technology on NixOS, Wayland support is steadily improving. Where X11 separates the X Server and the window manager, on Wayland those are combined: a Wayland Compositor is like an X11 window - manager, but also embeds the Wayland 'Server' functionality. This - means it is sufficient to install a Wayland Compositor such as sway - without separately enabling a Wayland server: + manager, but also embeds the Wayland Server + functionality. This means it is sufficient to install a Wayland + Compositor such as sway without separately enabling a Wayland + server: - + programs.sway.enable = true; @@ -21,7 +22,7 @@ programs.sway.enable = true; be able to share your screen, you might want to activate this option: - + xdg.portal.wlr.enable = true; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/wireless.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/wireless.section.xml index d39ec4fac4..79feab4720 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/wireless.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/wireless.section.xml @@ -9,13 +9,13 @@ NixOS will start wpa_supplicant for you if you enable this setting: - + networking.wireless.enable = true; NixOS lets you specify networks for wpa_supplicant declaratively: - + networking.wireless.networks = { echelon = { # SSID with no spaces or special characters psk = "abcdefgh"; @@ -49,7 +49,7 @@ network={ psk=dca6d6ed41f4ab5a984c9f55f6f66d4efdc720ebf66959810f4329bb391c5435 } - + networking.wireless.networks = { echelon = { pskRaw = "dca6d6ed41f4ab5a984c9f55f6f66d4efdc720ebf66959810f4329bb391c5435"; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/x-windows.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/x-windows.chapter.xml index c17e98983b..c5a8b9bae8 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/x-windows.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/x-windows.chapter.xml @@ -4,7 +4,7 @@ The X Window System (X11) provides the basis of NixOS’ graphical user interface. It can be enabled as follows: - + services.xserver.enable = true; @@ -13,7 +13,7 @@ services.xserver.enable = true; and intel). You can also specify a driver manually, e.g. - + services.xserver.videoDrivers = [ "r128" ]; @@ -25,7 +25,7 @@ services.xserver.videoDrivers = [ "r128" ]; xterm window. Thus you should pick one or more of the following lines: - + services.xserver.desktopManager.plasma5.enable = true; services.xserver.desktopManager.xfce.enable = true; services.xserver.desktopManager.gnome.enable = true; @@ -42,14 +42,14 @@ services.xserver.windowManager.herbstluftwm.enable = true; LightDM. You can select an alternative one by picking one of the following lines: - + services.xserver.displayManager.sddm.enable = true; services.xserver.displayManager.gdm.enable = true; You can set the keyboard layout (and optionally the layout variant): - + services.xserver.layout = "de"; services.xserver.xkbVariant = "neo"; @@ -57,7 +57,7 @@ services.xserver.xkbVariant = "neo"; The X server is started automatically at boot time. If you don’t want this to happen, you can set: - + services.xserver.autorun = false; @@ -70,7 +70,7 @@ services.xserver.autorun = false; On 64-bit systems, if you want OpenGL for 32-bit programs such as in Wine, you should also set the following: - + hardware.opengl.driSupport32Bit = true;
@@ -88,16 +88,16 @@ hardware.opengl.driSupport32Bit = true; To enable auto-login, you need to define your default window manager and desktop environment. If you wanted no desktop - environment and i3 as your your window manager, you'd define: + environment and i3 as your your window manager, you’d define: - + services.xserver.displayManager.defaultSession = "none+i3"; Every display manager in NixOS supports auto-login, here is an example using lightdm for a user alice: - + services.xserver.displayManager.lightdm.enable = true; services.xserver.displayManager.autoLogin.enable = true; services.xserver.displayManager.autoLogin.user = "alice"; @@ -122,8 +122,8 @@ services.xserver.displayManager.autoLogin.user = "alice"; The second driver, intel, is specific to Intel GPUs, but not recommended by most distributions: it lacks several - modern features (for example, it doesn't support Glamor) and the - package hasn't been officially updated since 2015. + modern features (for example, it doesn’t support Glamor) and the + package hasn’t been officially updated since 2015. The results vary depending on the hardware, so you may have to try @@ -131,14 +131,14 @@ services.xserver.displayManager.autoLogin.user = "alice"; to set one. The recommended configuration for modern systems is: - + services.xserver.videoDrivers = [ "modesetting" ]; If you experience screen tearing no matter what, this configuration was reported to resolve the issue: - + services.xserver.videoDrivers = [ "intel" ]; services.xserver.deviceSection = '' Option "DRI" "2" @@ -159,14 +159,14 @@ services.xserver.deviceSection = '' enabled by default because it’s not free software. You can enable it as follows: - + services.xserver.videoDrivers = [ "nvidia" ]; Or if you have an older card, you may have to use one of the legacy drivers: - + services.xserver.videoDrivers = [ "nvidiaLegacy390" ]; services.xserver.videoDrivers = [ "nvidiaLegacy340" ]; services.xserver.videoDrivers = [ "nvidiaLegacy304" ]; @@ -181,11 +181,11 @@ services.xserver.videoDrivers = [ "nvidiaLegacy304" ]; AMD provides a proprietary driver for its graphics cards that is not enabled by default because it’s not Free Software, is often - broken in nixpkgs and as of this writing doesn't offer more + broken in nixpkgs and as of this writing doesn’t offer more features or performance. If you still want to use it anyway, you need to explicitly set: - + services.xserver.videoDrivers = [ "amdgpu-pro" ]; @@ -199,14 +199,14 @@ services.xserver.videoDrivers = [ "amdgpu-pro" ]; Support for Synaptics touchpads (found in many laptops such as the Dell Latitude series) can be enabled as follows: - + services.xserver.libinput.enable = true; The driver has many options (see ). For instance, the following disables tap-to-click behavior: - + services.xserver.libinput.touchpad.tapping = false; @@ -222,7 +222,7 @@ services.xserver.libinput.touchpad.tapping = false; applications look similar to GTK ones, you can use the following configuration: - + qt5.enable = true; qt5.platformTheme = "gtk2"; qt5.style = "gtk2"; @@ -244,10 +244,10 @@ qt5.style = "gtk2"; Create a file called us-greek with the following content (under a directory called - symbols; it's an XKB peculiarity that will help + symbols; it’s an XKB peculiarity that will help with testing): - + xkb_symbols "us-greek" { include "us(basic)" // includes the base US keys @@ -263,7 +263,7 @@ xkb_symbols "us-greek" A minimal layout specification must include the following: - + services.xserver.extraLayouts.us-greek = { description = "US layout with alt-gr greek"; languages = [ "eng" ]; @@ -279,7 +279,7 @@ services.xserver.extraLayouts.us-greek = { Applying this customization requires rebuilding several packages, and a broken XKB file can lead to the X session crashing at login. - Therefore, you're strongly advised to test + Therefore, you’re strongly advised to test your layout before applying it: @@ -312,7 +312,7 @@ $ echo "$(nix-build --no-out-link '<nixpkgs>' -A xorg.xkeyboardconfig interest, then create a media-key file to hold the keycodes definitions - + xkb_keycodes "media" { <volUp> = 123; @@ -322,7 +322,7 @@ xkb_keycodes "media" Now use the newly define keycodes in media-sym: - + xkb_symbols "media" { key.type = "ONE_LEVEL"; @@ -333,7 +333,7 @@ xkb_symbols "media" As before, to install the layout do - + services.xserver.extraLayouts.media = { description = "Multimedia keys remapping"; languages = [ "eng" ]; @@ -352,18 +352,18 @@ services.xserver.extraLayouts.media = { Unfortunately, the Xorg server does not (currently) support setting a keymap directly but relies instead on XKB rules to - select the matching components (keycodes, types, ...) of a layout. - This means that components other than symbols won't be loaded by + select the matching components (keycodes, types, …) of a layout. + This means that components other than symbols won’t be loaded by default. As a workaround, you can set the keymap using setxkbmap at the start of the session with: - + services.xserver.displayManager.sessionCommands = "setxkbmap -keycodes media"; If you are manually starting the X server, you should set the argument -xkbdir /etc/X11/xkb, otherwise X - won't find your layout files. For example with + won’t find your layout files. For example with xinit run diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/xfce.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/xfce.chapter.xml index 42e70d1d81..7ec69b5e9b 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/xfce.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/configuration/xfce.chapter.xml @@ -3,7 +3,7 @@ To enable the Xfce Desktop Environment, set - + services.xserver.desktopManager.xfce.enable = true; services.xserver.displayManager.defaultSession = "xfce"; @@ -11,7 +11,7 @@ services.xserver.displayManager.defaultSession = "xfce"; Optionally, picom can be enabled for nice graphical effects, some example settings: - + services.picom = { enable = true; fade = true; @@ -36,8 +36,8 @@ services.picom = { . - If you'd like to add extra plugins to Thunar, add them to - . You shouldn't just + If you’d like to add extra plugins to Thunar, add them to + . You shouldn’t just add them to .
@@ -54,9 +54,10 @@ Thunar:2410): GVFS-RemoteVolumeMonitor-WARNING **: remote volume monitor with db This is caused by some needed GNOME services not running. This is - all fixed by enabling "Launch GNOME services on startup" - in the Advanced tab of the Session and Startup settings panel. - Alternatively, you can run this command to do the same thing. + all fixed by enabling Launch GNOME services on + startup in the Advanced tab of the Session and Startup + settings panel. Alternatively, you can run this command to do the + same thing. $ xfconf-query -c xfce4-session -p /compat/LaunchGNOME -s true diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/contributing-to-this-manual.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/contributing-to-this-manual.chapter.xml index a9b0c6a5ee..99dc5ce30b 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/contributing-to-this-manual.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/contributing-to-this-manual.chapter.xml @@ -1,7 +1,9 @@ Contributing to this manual - The DocBook and CommonMark sources of NixOS’ manual are in the + The + DocBook + and CommonMark sources of the NixOS manual are in the nixos/doc/manual subdirectory of the Nixpkgs @@ -19,4 +21,32 @@ $ nix-build nixos/release.nix -A manual.x86_64-linux If the build succeeds, the manual will be in ./result/share/doc/nixos/index.html. + + Contributing to the man pages + + + The man pages are written in + DocBook + which is XML. + + + To see what your edits look like: + + +$ cd /path/to/nixpkgs +$ nix-build nixos/release.nix -A manpages.x86_64-linux + + + You can then read the man page you edited by running + + +$ man --manpath=result/share/man nixos-rebuild # Replace nixos-rebuild with the command whose manual you edited + + + If you’re on a different architecture that’s supported by NixOS + (check nixos/release.nix) then replace + x86_64-linux with the architecture. + nix-build will complain otherwise, but should + also tell you which architecture you have + the supported ones. + diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/activation-script.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/activation-script.section.xml index 981ebf37e6..429b45c93d 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/activation-script.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/activation-script.section.xml @@ -22,7 +22,7 @@ these dependencies into account and order the snippets accordingly. As a simple example: - + system.activationScripts.my-activation-script = { deps = [ "etc" ]; # supportsDryActivation = true; @@ -45,7 +45,7 @@ system.activationScripts.my-activation-script = { An activation script can write to special files instructing switch-to-configuration to restart/reload units. The script will take these requests into account and will - incorperate the unit configuration as described above. This means + incorporate the unit configuration as described above. This means that the activation script will fake a modified unit file and switch-to-configuration will act accordingly. By doing so, configuration like @@ -66,7 +66,7 @@ system.activationScripts.my-activation-script = { /run/nixos/dry-activation-reload-list. Those files can contain newline-separated lists of unit names where duplicates are being ignored. These files are not create - automatically and activation scripts must take the possiblility into + automatically and activation scripts must take the possibility into account that they have to create them first.
diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/assertions.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/assertions.section.xml index 0844d484d6..13f04d5d18 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/assertions.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/assertions.section.xml @@ -18,7 +18,7 @@ This is an example of using warnings. - + { config, lib, ... }: { config = lib.mkIf config.services.foo.enable { @@ -42,7 +42,7 @@ assertion is useful to prevent such a broken system from being built. - + { config, lib, ... }: { config = lib.mkIf config.services.syslogd.enable { diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/bootspec.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/bootspec.chapter.xml index acf8ca76bf..9ecbe1d1be 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/bootspec.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/bootspec.chapter.xml @@ -43,7 +43,7 @@ /etc/os-release in order to bake it into a unified kernel image: - + { config, lib, ... }: { boot.bootspec.extensions = { "org.secureboot.osRelease" = config.environment.etc."os-release".source; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/freeform-modules.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/freeform-modules.section.xml index 86a9cf3140..c51bc76ff9 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/freeform-modules.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/freeform-modules.section.xml @@ -30,7 +30,7 @@ type-checked settings attribute for a more complete example. - + { lib, config, ... }: { options.settings = lib.mkOption { @@ -52,7 +52,7 @@ And the following shows what such a module then allows - + { # Not a declared option, but the freeform type allows this settings.logLevel = "debug"; @@ -72,7 +72,7 @@ Freeform attributes cannot depend on other attributes of the same set without infinite recursion: - + { # This throws infinite recursion encountered settings.logLevel = lib.mkIf (config.settings.port == 80) "debug"; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/importing-modules.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/importing-modules.section.xml index cb04dde67c..96e5e1bb16 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/importing-modules.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/importing-modules.section.xml @@ -4,7 +4,7 @@ Sometimes NixOS modules need to be used in configuration but exist outside of Nixpkgs. These modules can be imported: - + { config, lib, pkgs, ... }: { @@ -23,18 +23,18 @@ Nixpkgs NixOS modules. Like any NixOS module, this module can import additional modules: - + # ./module-list/default.nix [ ./example-module1 ./example-module2 ] - + # ./extra-module/default.nix { imports = import ./module-list.nix; } - + # NIXOS_EXTRA_MODULE_PATH=/absolute/path/to/extra-module { config, lib, pkgs, ... }: diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/meta-attributes.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/meta-attributes.section.xml index 1eb6e0f303..9cc58afa1f 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/meta-attributes.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/meta-attributes.section.xml @@ -15,7 +15,7 @@ Each of the meta-attributes must be defined at most once per module file. - + { config, lib, pkgs, ... }: { options = { diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/option-declarations.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/option-declarations.section.xml index 0932a51a18..2e6a12d530 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/option-declarations.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/option-declarations.section.xml @@ -6,7 +6,7 @@ hasn’t been declared in any module. An option declaration generally looks like this: - + options = { name = mkOption { type = type specification; @@ -127,7 +127,7 @@ options = { For example: - + lib.mkEnableOption "magic" # is like lib.mkOption { @@ -142,7 +142,7 @@ lib.mkOption { Usage: - + mkPackageOption pkgs "name" { default = [ "path" "in" "pkgs" ]; example = "literal example"; } @@ -177,7 +177,7 @@ mkPackageOption pkgs "name" { default = [ "path" "in&qu Examples: - + lib.mkPackageOption pkgs "hello" { } # is like lib.mkOption { @@ -188,7 +188,7 @@ lib.mkOption { } - + lib.mkPackageOption pkgs "GHC" { default = [ "ghc" ]; example = "pkgs.haskell.packages.ghc92.ghc.withPackages (hkgs: [ hkgs.primes ])"; @@ -222,7 +222,7 @@ lib.mkOption { As an example, we will take the case of display managers. There is a central display manager module for generic display manager options and a module file per display - manager backend (sddm, gdm ...). + manager backend (sddm, gdm …). There are two approaches we could take with this module @@ -287,7 +287,7 @@ lib.mkOption { Example: Extensible type placeholder in the service module - + services.xserver.displayManager.enable = mkOption { description = "Display manager to use"; type = with types; nullOr (enum [ ]); @@ -299,7 +299,7 @@ services.xserver.displayManager.enable = mkOption { services.xserver.displayManager.enable in the gdm module - + services.xserver.displayManager.enable = mkOption { type = with types; nullOr (enum [ "gdm" ]); }; @@ -310,7 +310,7 @@ services.xserver.displayManager.enable = mkOption { services.xserver.displayManager.enable in the sddm module - + services.xserver.displayManager.enable = mkOption { type = with types; nullOr (enum [ "sddm" ]); }; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/option-def.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/option-def.section.xml index 3c1a979e70..87b290ec39 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/option-def.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/option-def.section.xml @@ -4,7 +4,7 @@ Option definitions are generally straight-forward bindings of values to option names, like - + config = { services.httpd.enable = true; }; @@ -21,7 +21,7 @@ config = { another option, you may need to use mkIf. Consider, for instance: - + config = if config.services.httpd.enable then { environment.systemPackages = [ ... ]; ... @@ -34,7 +34,7 @@ config = if config.services.httpd.enable then { value being constructed here. After all, you could also write the clearly circular and contradictory: - + config = if config.services.httpd.enable then { services.httpd.enable = false; } else { @@ -44,7 +44,7 @@ config = if config.services.httpd.enable then { The solution is to write: - + config = mkIf config.services.httpd.enable { environment.systemPackages = [ ... ]; ... @@ -55,7 +55,7 @@ config = mkIf config.services.httpd.enable { of the conditional to be pushed down into the individual definitions, as if you had written: - + config = { environment.systemPackages = if config.services.httpd.enable then [ ... ] else []; ... @@ -72,7 +72,7 @@ config = { option defaults have priority 1500. You can specify an explicit priority by using mkOverride, e.g. - + services.openssh.enable = mkOverride 10 false; @@ -94,7 +94,7 @@ services.openssh.enable = mkOverride 10 false; mkOrder 500 and mkOrder 1500, respectively. As an example, - + hardware.firmware = mkBefore [ myFirmware ]; @@ -117,7 +117,7 @@ hardware.firmware = mkBefore [ myFirmware ]; to be merged together as if they were declared in separate modules. This can be done using mkMerge: - + config = mkMerge [ # Unconditional stuff. { environment.systemPackages = [ ... ]; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/option-types.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/option-types.section.xml index 4036bc0ba7..363399b086 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/option-types.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/option-types.section.xml @@ -81,14 +81,14 @@ Two definitions of this type like - + { str = lib.mkDefault "foo"; pkg.hello = pkgs.hello; fun.fun = x: x + 1; } - + { str = lib.mkIf true "bar"; pkg.gcc = pkgs.gcc; @@ -98,7 +98,7 @@ will get merged to - + { str = "bar"; pkg.gcc = pkgs.gcc; @@ -152,13 +152,13 @@ This type will be deprecated in the future because it - doesn't recurse into attribute sets, silently drops - earlier attribute definitions, and doesn't discharge + doesn’t recurse into attribute sets, silently drops + earlier attribute definitions, and doesn’t discharge lib.mkDefault, lib.mkIf and co. For allowing arbitrary attribute sets, prefer types.attrsOf types.anything instead - which doesn't have these problems. + which doesn’t have these problems. @@ -453,7 +453,7 @@ _module.args should be used instead for most arguments since it allows overriding. specialArgs - should only be used for arguments that can't go through + should only be used for arguments that can’t go through the module fixed-point, because of infinite recursion or other problems. An example is overriding the lib argument, because @@ -477,7 +477,7 @@ instead of requiring the-submodule.config.config = "value". This is because only when modules - don't set the + don’t set the config or options keys, all keys are interpreted as option definitions in the config section. Enabling this @@ -668,7 +668,7 @@ types.oneOf [ - t1 t2 ... ] + t1 t2 … ] @@ -712,7 +712,7 @@ options key defining the sub-options. Submodule option definitions are type-checked accordingly to the options declarations. Of course, you can nest - submodule option definitons for even higher modularity. + submodule option definitions for even higher modularity. The option set can be defined directly @@ -732,7 +732,7 @@ Example: Directly defined submodule - + options.mod = mkOption { description = "submodule example"; type = with types; submodule { @@ -752,7 +752,7 @@ options.mod = mkOption { Example: Submodule defined as a reference - + let modOptions = { options = { @@ -787,7 +787,7 @@ options.mod = mkOption { Example: Declaration of a list of submodules - + options.mod = mkOption { description = "submodule example"; type = with types; listOf (submodule { @@ -807,7 +807,7 @@ options.mod = mkOption { Example: Definition of a list of submodules - + config.mod = [ { foo = 1; bar = "one"; } { foo = 2; bar = "two"; } @@ -827,7 +827,7 @@ config.mod = [ Example: Declaration of attribute sets of submodules - + options.mod = mkOption { description = "submodule example"; type = with types; attrsOf (submodule { @@ -847,7 +847,7 @@ options.mod = mkOption { Example: Definition of attribute sets of submodules - + config.mod.one = { foo = 1; bar = "one"; }; config.mod.two = { foo = 2; bar = "two"; }; @@ -878,7 +878,7 @@ config.mod.two = { foo = 2; bar = "two"; }; Example: Adding a type check - + byte = mkOption { description = "An integer between 0 and 255."; type = types.addCheck types.int (x: x >= 0 && x <= 255); @@ -889,7 +889,7 @@ byte = mkOption { Example: Overriding a type check - + nixThings = mkOption { description = "words that start with 'nix'"; type = types.str // { diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/replace-modules.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/replace-modules.section.xml index cf8a39ba84..d8aaf59df3 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/replace-modules.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/replace-modules.section.xml @@ -3,8 +3,8 @@ Modules that are imported can also be disabled. The option declarations, config implementation and the imports of a disabled - module will be ignored, allowing another to take it's place. This - can be used to import a set of modules from another channel while + module will be ignored, allowing another to take its place. This can + be used to import a set of modules from another channel while keeping the rest of the system on a stable release. @@ -19,10 +19,10 @@ This example will replace the existing postgresql module with the version defined in the nixos-unstable channel while keeping the rest of the modules and packages from the original nixos channel. This - only overrides the module definition, this won't use postgresql from + only overrides the module definition, this won’t use postgresql from nixos-unstable unless explicitly configured to do so. - + { config, lib, pkgs, ... }: { @@ -40,9 +40,9 @@ This example shows how to define a custom module as a replacement for an existing module. Importing this module will disable the - original module without having to know it's implementation details. + original module without having to know its implementation details. - + { config, lib, pkgs, ... }: with lib; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/settings-options.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/settings-options.section.xml index d26dd96243..898cd3b2b6 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/settings-options.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/settings-options.section.xml @@ -19,10 +19,10 @@ - Non-nix-representable ones: These can't be trivially mapped to a + Non-nix-representable ones: These can’t be trivially mapped to a subset of Nix syntax. Most generic programming languages are in this group, e.g. bash, since the statement - if true; then echo hi; fi doesn't have a + if true; then echo hi; fi doesn’t have a trivial representation in Nix. @@ -42,8 +42,7 @@
- Nix-representable Formats (JSON, YAML, TOML, INI, - ...) + Nix-representable Formats (JSON, YAML, TOML, INI, …) By convention, formats like this are handled with a generic settings option, representing the full program @@ -318,7 +317,7 @@ used, along with some other related best practices. See the comments for explanations. - + { options, config, lib, pkgs, ... }: let cfg = config.services.foo; @@ -391,7 +390,7 @@ in { Example: Declaring a type-checked settings attribute - + settings = lib.mkOption { type = lib.types.submodule { diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/writing-documentation.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/writing-documentation.chapter.xml index 079c800605..0d8a33df20 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/writing-documentation.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/writing-documentation.chapter.xml @@ -23,7 +23,7 @@ $ nix-shell nix-shell$ make - Once you are done making modifications to the manual, it's + Once you are done making modifications to the manual, it’s important to build it before committing. You can do that as follows: diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/writing-modules.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/writing-modules.chapter.xml index 367731eda0..35e94845c9 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/writing-modules.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/writing-modules.chapter.xml @@ -32,7 +32,7 @@ In , we saw the following structure of NixOS modules: - + { config, pkgs, ... }: { option definitions @@ -50,7 +50,7 @@ Example: Structure of NixOS Modules - + { config, pkgs, ... }: { @@ -90,7 +90,7 @@ This imports list enumerates the paths to other NixOS modules that should be included in the evaluation of the system configuration. A default set of modules is defined in - the file modules/module-list.nix. These don't + the file modules/module-list.nix. These don’t need to be added in the import list. @@ -146,7 +146,7 @@ Example: NixOS Module for the locate Service - + { config, lib, pkgs, ... }: with lib; @@ -208,7 +208,7 @@ in { Example: Escaping in Exec directives - + { config, lib, pkgs, utils, ... }: with lib; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/development/writing-nixos-tests.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/development/writing-nixos-tests.section.xml index 4db196273d..dc921dad97 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/development/writing-nixos-tests.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/development/writing-nixos-tests.section.xml @@ -3,7 +3,7 @@ A NixOS test is a module that has the following structure: - + { # One or more machines: @@ -58,14 +58,14 @@ Tests that are part of NixOS are added to nixos/tests/all-tests.nix. - + hostname = runTest ./hostname.nix; Overrides can be added by defining an anonymous module in all-tests.nix. - + hostname = runTest { imports = [ ./hostname.nix ]; defaults.networking.firewall.enable = false; @@ -87,7 +87,7 @@ nix-build -A nixosTests.hostname Outside the nixpkgs repository, you can instantiate the test by first importing the NixOS library, - + let nixos-lib = import (nixpkgs + "/nixos/lib") { }; in @@ -255,7 +255,7 @@ start_all() Return a list of different interpretations of what is - currently visible on the machine's screen using optical + currently visible on the machine’s screen using optical character recognition. The number and order of the interpretations is not specified and is subject to change, but if no exception is raised at least one will be returned. @@ -276,7 +276,7 @@ start_all() Return a textual representation of what is currently visible - on the machine's screen using optical character recognition. + on the machine’s screen using optical character recognition. @@ -536,7 +536,7 @@ start_all() Wait until the supplied regular expressions match a line of the serial console output. This method is useful when OCR is - not possibile or accurate enough. + not possible or accurate enough. @@ -630,10 +630,10 @@ machine.wait_for_unit("xautolock.service", "x-session-user") stop_job. - For faster dev cycles it's also possible to disable the - code-linters (this shouldn't be commited though): + For faster dev cycles it’s also possible to disable the + code-linters (this shouldn’t be committed though): - + { skipLint = true; nodes.machine = @@ -650,10 +650,10 @@ machine.wait_for_unit("xautolock.service", "x-session-user") This will produce a Nix warning at evaluation time. To fully disable the linter, wrap the test script in comment directives to - disable the Black linter directly (again, don't commit this within + disable the Black linter directly (again, don’t commit this within the Nixpkgs repository): - + testScript = '' # fmt: off @@ -665,7 +665,7 @@ machine.wait_for_unit("xautolock.service", "x-session-user") Similarly, the type checking of test scripts can be disabled in the following way: - + { skipTypeCheck = true; nodes.machine = @@ -700,25 +700,37 @@ with foo_running: polling_condition takes the following (optional) arguments: - - seconds_interval - - - : specifies how often the condition should be polled: - + + + + seconds_interval + + + + specifies how often the condition should be polled: + + + + @polling_condition(seconds_interval=10) def foo_running(): machine.succeed("pgrep -x foo") - - description - - - : is used in the log when the condition is checked. If this is not - provided, the description is pulled from the docstring of the - function. These two are therefore equivalent: - + + + + description + + + + is used in the log when the condition is checked. If this is + not provided, the description is pulled from the docstring + of the function. These two are therefore equivalent: + + + + @polling_condition def foo_running(): @@ -739,7 +751,7 @@ def foo_running(): extraPythonPackages. For example, you could add numpy like this: - + { extraPythonPackages = p: [ p.numpy ]; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/building-nixos.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/building-nixos.chapter.xml index ea2d01bebc..0e46c1d48c 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/building-nixos.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/building-nixos.chapter.xml @@ -24,7 +24,7 @@ System images, such as the live installer ones, know how to enforce - configuration settings on wich they immediately depend in order to + configuration settings on which they immediately depend in order to work correctly. @@ -62,7 +62,7 @@ $ nix-build -A config.system.build.isoImage -I nixos-config=modules/installer/cd can create the following file at modules/installer/cd-dvd/installation-cd-graphical-gnome-macbook.nix: - + { config, ... }: { @@ -102,7 +102,7 @@ $ nix-build -A config.system.build.isoImage -I nixos-config=modules/installer/cd it needs at a minimum for correct functioning, while the installer base image overrides the entire file system layout because there can’t be any other guarantees on a live medium than those given by - the live medium itself. The latter is especially true befor + the live medium itself. The latter is especially true before formatting the target block device(s). On the other hand, the netboot iso only overrides its minimum dependencies since netboot images are always made-to-target. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/changing-config.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/changing-config.chapter.xml index 86f0b15b41..727c61c45d 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/changing-config.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/changing-config.chapter.xml @@ -16,7 +16,7 @@ - This command doesn't start/stop + This command doesn’t start/stop user services automatically. nixos-rebuild only runs a daemon-reload for each user with running user @@ -64,8 +64,8 @@ which causes the new configuration (and previous ones created using -p test) to show up in the GRUB submenu - NixOS - Profile 'test'. This can be useful to - separate test configurations from stable + NixOS - Profile test. This can be + useful to separate test configurations from stable configurations. @@ -94,7 +94,7 @@ $ ./result/bin/run-*-vm unless you have set mutableUsers = false. Another way is to temporarily add the following to your configuration: - + users.users.your-user.initialHashedPassword = "test"; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-behind-a-proxy.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-behind-a-proxy.section.xml index a551807cd4..00b4e87667 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-behind-a-proxy.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-behind-a-proxy.section.xml @@ -11,7 +11,7 @@ /mnt/etc/nixos/configuration.nix to keep the internet accessible after reboot. - + networking.proxy.default = "http://user:password@proxy:port/"; networking.proxy.noProxy = "127.0.0.1,localhost,internal.domain"; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-from-other-distro.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-from-other-distro.section.xml index 35309a7aa3..5f18d528d3 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-from-other-distro.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-from-other-distro.section.xml @@ -53,7 +53,7 @@ $ . $HOME/.nix-profile/etc/profile.d/nix.sh # …or open a fresh shell Switch to the NixOS channel: - If you've just installed Nix on a non-NixOS distribution, you + If you’ve just installed Nix on a non-NixOS distribution, you will be on the nixpkgs channel by default. @@ -78,11 +78,11 @@ $ nix-channel --add https://nixos.org/channels/nixos-version nixpkgs Install the NixOS installation tools: - You'll need nixos-generate-config and + You’ll need nixos-generate-config and nixos-install, but this also makes some man pages and nixos-enter available, just in case you want to chroot into your NixOS partition. NixOS installs - these by default, but you don't have NixOS yet.. + these by default, but you don’t have NixOS yet.. $ nix-env -f '<nixpkgs>' -iA nixos-install-tools @@ -105,7 +105,7 @@ $ nix-env -f '<nixpkgs>' -iA nixos-install-tools mounting steps of - If you're about to install NixOS in place using + If you’re about to install NixOS in place using NIXOS_LUSTRATE there is nothing to do for this step. @@ -118,18 +118,18 @@ $ nix-env -f '<nixpkgs>' -iA nixos-install-tools $ sudo `which nixos-generate-config` --root /mnt - You'll probably want to edit the configuration files. Refer to + You’ll probably want to edit the configuration files. Refer to the nixos-generate-config step in for more information. Consider setting up the NixOS bootloader to give you the ability to boot on your existing Linux partition. For instance, if - you're using GRUB and your existing distribution is running + you’re using GRUB and your existing distribution is running Ubuntu, you may want to add something like this to your configuration.nix: - + boot.loader.grub.extraEntries = '' menuentry "Ubuntu" { search --set=ubuntu --fs-uuid 3cc3e652-0c1f-4800-8451-033754f68e6e @@ -215,21 +215,21 @@ $ sudo `which nixos-generate-config` Note that this will place the generated configuration files in - /etc/nixos. You'll probably want to edit the + /etc/nixos. You’ll probably want to edit the configuration files. Refer to the nixos-generate-config step in for more information. - You'll likely want to set a root password for your first boot - using the configuration files because you won't have a chance to - enter a password until after you reboot. You can initalize the + You’ll likely want to set a root password for your first boot + using the configuration files because you won’t have a chance to + enter a password until after you reboot. You can initialize the root password to an empty one with this line: (and of course - don't forget to set one once you've rebooted or to lock the + don’t forget to set one once you’ve rebooted or to lock the account with sudo passwd -l root if you use sudo) - + users.users.root.initialHashedPassword = ""; @@ -262,7 +262,7 @@ $ sudo chown -R 0:0 /nix /etc/NIXOS_LUSTRATE tells the NixOS bootup - scripts to move everything that's in the + scripts to move everything that’s in the root partition to /old-root. This will move your existing distribution out of the way in the very early stages of the NixOS bootup. There are exceptions (we do need to @@ -290,12 +290,12 @@ $ sudo chown -R 0:0 /nix Support for NIXOS_LUSTRATE was added in - NixOS 16.09. The act of "lustrating" refers to the - wiping of the existing distribution. Creating + NixOS 16.09. The act of lustrating refers to + the wiping of the existing distribution. Creating /etc/NIXOS_LUSTRATE can also be used on NixOS to remove all mutable files from your root partition - (anything that's not in /nix or - /boot gets "lustrated" on the + (anything that’s not in /nix or + /boot gets lustrated on the next boot. @@ -307,14 +307,14 @@ $ sudo chown -R 0:0 /nix - Let's create the files: + Let’s create the files: $ sudo touch /etc/NIXOS $ sudo touch /etc/NIXOS_LUSTRATE - Let's also make sure the NixOS configuration files are kept once + Let’s also make sure the NixOS configuration files are kept once we reboot on NixOS: @@ -331,7 +331,7 @@ $ echo etc/nixos | sudo tee -a /etc/NIXOS_LUSTRATE Once you complete this step, your current distribution will no - longer be bootable! If you didn't get all the NixOS + longer be bootable! If you didn’t get all the NixOS configuration right, especially those settings pertaining to boot loading and root partition, NixOS may not be bootable either. Have a USB rescue device ready in case this happens. @@ -349,7 +349,7 @@ sudo /nix/var/nix/profiles/system/bin/switch-to-configuration boot If for some reason you want to revert to the old distribution, - you'll need to boot on a USB rescue disk and do something along + you’ll need to boot on a USB rescue disk and do something along these lines: @@ -367,7 +367,7 @@ sudo /nix/var/nix/profiles/system/bin/switch-to-configuration boot loader. - And of course, if you're happy with NixOS and no longer need the + And of course, if you’re happy with NixOS and no longer need the old distribution: @@ -376,7 +376,7 @@ sudo rm -rf /old-root - It's also worth noting that this whole process can be automated. + It’s also worth noting that this whole process can be automated. This is especially useful for Cloud VMs, where provider do not provide NixOS. For instance, nixos-infect diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-kexec.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-kexec.section.xml index 46ea0d59b6..40a697c740 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-kexec.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-kexec.section.xml @@ -54,7 +54,7 @@ nix-build -A kexec.x86_64-linux '<nixpkgs/nixos/release.nix>' running Linux Distribution. - Note it’s symlinks pointing elsewhere, so cd in, + Note its symlinks pointing elsewhere, so cd in, and use scp * root@$destination to copy it over, rather than rsync. @@ -69,7 +69,7 @@ nix-build -A kexec.x86_64-linux '<nixpkgs/nixos/release.nix>' instead of the default installer image, you can build your own configuration.nix: - + { modulesPath, ... }: { imports = [ (modulesPath + "/installer/netboot/netboot-minimal.nix") diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-usb.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-usb.section.xml index 9d12ac45aa..cb0fd95bc7 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-usb.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-usb.section.xml @@ -110,15 +110,15 @@ diskutil unmountDisk diskX sudo dd if=<path-to-image> of=/dev/rdiskX bs=4m - After dd completes, a GUI dialog "The disk - you inserted was not readable by this computer" will pop up, - which can be ignored. + After dd completes, a GUI dialog The + disk you inserted was not readable by this computer will + pop up, which can be ignored. - Using the 'raw' rdiskX device instead of - diskX with dd completes in minutes instead of - hours. + Using the raw rdiskX device + instead of diskX with dd completes in minutes + instead of hours. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-virtualbox-guest.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-virtualbox-guest.section.xml index c8bb286c8f..e435081852 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-virtualbox-guest.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing-virtualbox-guest.section.xml @@ -1,4 +1,4 @@ -
+
Installing in a VirtualBox guest Installing NixOS into a VirtualBox guest is convenient for users who @@ -11,8 +11,8 @@ - Add a New Machine in VirtualBox with OS Type "Linux / Other - Linux" + Add a New Machine in VirtualBox with OS Type Linux / + Other Linux @@ -38,7 +38,7 @@ Click on Settings / System / Acceleration and enable - "VT-x/AMD-V" acceleration + VT-x/AMD-V acceleration @@ -58,25 +58,25 @@ There are a few modifications you should make in configuration.nix. Enable booting: - + boot.loader.grub.device = "/dev/sda"; Also remove the fsck that runs at startup. It will always fail to run, stopping your boot until you press *. - + boot.initrd.checkJournalingFS = false; Shared folders can be given a name and a path in the host system in the VirtualBox settings (Machine / Settings / Shared Folders, then - click on the "Add" icon). Add the following to the + click on the Add icon). Add the following to the /etc/nixos/configuration.nix to auto-mount them. If you do not add "nofail", the system will not boot properly. - + { config, pkgs, ...} : { fileSystems."/virtualboxshare" = { diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing.chapter.xml index f2ed58c0c1..5654eb424f 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/installing.chapter.xml @@ -256,7 +256,7 @@ $ sudo -i On the minimal installer, NetworkManager is not available, so - configuration must be perfomed manually. To configure the wifi, + configuration must be performed manually. To configure the wifi, first start wpa_supplicant with sudo systemctl start wpa_supplicant, then run wpa_cli. For most home networks, you need to @@ -345,12 +345,12 @@ OK - Here's an example partition scheme for UEFI, using + Here’s an example partition scheme for UEFI, using /dev/sda as the device. - You can safely ignore parted's + You can safely ignore parted’s informational message about needing to update /etc/fstab. @@ -415,12 +415,12 @@ OK - Here's an example partition scheme for Legacy Boot, using + Here’s an example partition scheme for Legacy Boot, using /dev/sda as the device. - You can safely ignore parted's + You can safely ignore parted’s informational message about needing to update /etc/fstab. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/upgrading.chapter.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/upgrading.chapter.xml index f6aedc800a..9f4cfaf36b 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/installation/upgrading.chapter.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/installation/upgrading.chapter.xml @@ -128,7 +128,7 @@ nixos https://nixos.org/channels/nixos-unstable You can keep a NixOS system up-to-date automatically by adding the following to configuration.nix: - + system.autoUpgrade.enable = true; system.autoUpgrade.allowReboot = true; @@ -145,7 +145,7 @@ system.autoUpgrade.allowReboot = true; contains a different kernel, initrd or kernel modules. You can also specify a channel explicitly, e.g. - + system.autoUpgrade.channel = https://nixos.org/channels/nixos-22.11;
diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1404.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1404.section.xml index 8771623b46..5686545c1a 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1404.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1404.section.xml @@ -79,7 +79,7 @@ the NixOS configuration. For instance, if a package foo provides systemd units, you can say: - + { systemd.packages = [ pkgs.foo ]; } @@ -88,7 +88,7 @@ to enable those units. You can then set or override unit options in the usual way, e.g. - + { systemd.services.foo.wantedBy = [ "multi-user.target" ]; systemd.services.foo.serviceConfig.MemoryLimit = "512M"; @@ -105,7 +105,7 @@ NixOS configuration requires unfree packages from Nixpkgs, you need to enable support for them explicitly by setting: - + { nixpkgs.config.allowUnfree = true; } @@ -123,7 +123,7 @@ The Adobe Flash player is no longer enabled by default in the Firefox and Chromium wrappers. To enable it, you must set: - + { nixpkgs.config.allowUnfree = true; nixpkgs.config.firefox.enableAdobeFlash = true; # for Firefox @@ -136,7 +136,7 @@ The firewall is now enabled by default. If you don’t want this, you need to disable it explicitly: - + { networking.firewall.enable = false; } diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1412.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1412.section.xml index 3b6af73359..ccaa4f6bd0 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1412.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1412.section.xml @@ -370,7 +370,7 @@ documentation for details. If you wish to continue to use httpd 2.2, add the following line to your NixOS configuration: - + { services.httpd.package = pkgs.apacheHttpd_2_2; } diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1509.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1509.section.xml index 68d2ab389e..96b51a0510 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1509.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1509.section.xml @@ -9,12 +9,12 @@ The Haskell packages infrastructure has been re-designed from the ground up - ("Haskell NG"). NixOS now distributes the latest + (Haskell NG). NixOS now distributes the latest version of every single package registered on Hackage -- well in excess of 8,000 Haskell packages. Detailed instructions on how to use that infrastructure can be found in the - User's + User’s Guide to the Haskell Infrastructure. Users migrating from an earlier release may find helpful information below, in the list of backwards-incompatible changes. Furthermore, we @@ -23,8 +23,8 @@ Haskell release since version 0.0 as well as the most recent Stackage Nightly snapshot. The announcement - "Full - Stackage Support in Nixpkgs" gives additional + Full + Stackage Support in Nixpkgs gives additional details. @@ -42,7 +42,7 @@ - + { system.autoUpgrade.enable = true; } @@ -432,7 +432,7 @@ - + { system.stateVersion = "14.12"; } @@ -464,7 +464,7 @@ - Steam now doesn't need root rights to work. Instead of using + Steam now doesn’t need root rights to work. Instead of using *-steam-chrootenv, you should now just run steam. steamChrootEnv package was renamed to steam, and old @@ -523,7 +523,7 @@ - + { fileSystems."/shiny" = { device = "myshinysharedfolder"; @@ -534,15 +534,15 @@ - "nix-env -qa" no longer discovers - Haskell packages by name. The only packages visible in the - global scope are ghc, + nix-env -qa no longer + discovers Haskell packages by name. The only packages visible in + the global scope are ghc, cabal-install, and stack, but all other packages are hidden. The reason for this inconvenience is the sheer size of the Haskell package set. Name-based lookups are expensive, and most nix-env -qa operations would become much - slower if we'd add the entire Hackage database into the top + slower if we’d add the entire Hackage database into the top level attribute set. Instead, the list of Haskell packages can be displayed by running: @@ -566,13 +566,13 @@ nix-env -f "<nixpkgs>" -iA haskellPackages.pandoc Previous versions of NixOS came with a feature called ghc-wrapper, a small script that allowed GHC - to transparently pick up on libraries installed in the user's + to transparently pick up on libraries installed in the user’s profile. This feature has been deprecated; ghc-wrapper was removed from the distribution. The proper way to register Haskell libraries with the compiler now is the haskellPackages.ghcWithPackages function. The - User's + User’s Guide to the Haskell Infrastructure provides more information about this subject. @@ -593,7 +593,7 @@ nix-env -f "<nixpkgs>" -iA haskellPackages.pandoc have a function attribute called extension that users could override in their ~/.nixpkgs/config.nix files to configure - additional attributes, etc. That function still exists, but it's + additional attributes, etc. That function still exists, but it’s now called overrides. @@ -662,7 +662,7 @@ infinite recursion encountered lib, after adding it as argument of the module. The following module - + { config, pkgs, ... }: with pkgs.lib; @@ -677,7 +677,7 @@ with pkgs.lib; should be modified to look like: - + { config, pkgs, lib, ... }: with lib; @@ -695,7 +695,7 @@ with lib; replaced by (import <nixpkgs> {}). The following module - + { config, pkgs, ... }: let @@ -712,7 +712,7 @@ in should be modified to look like: - + { config, pkgs, ... }: let @@ -748,7 +748,7 @@ in /etc/ssh/moduli file with respect to the vulnerabilities discovered in the Diffie-Hellman key exchange can now - replace OpenSSH's default version with one they generated + replace OpenSSH’s default version with one they generated themselves using the new services.openssh.moduliFile option. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1603.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1603.section.xml index 172b800b59..25b356e0aa 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1603.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1603.section.xml @@ -378,7 +378,7 @@ You will need to add an import statement to your NixOS configuration in order to use it, e.g. - + { imports = [ <nixpkgs/nixos/modules/services/misc/gitit.nix> ]; } @@ -395,7 +395,7 @@ to be built in. All modules now reside in nginxModules set. Example configuration: - + nginx.override { modules = [ nginxModules.rtmp nginxModules.dav nginxModules.moreheaders ]; } @@ -403,7 +403,7 @@ nginx.override { - s3sync is removed, as it hasn't been + s3sync is removed, as it hasn’t been developed by upstream for 4 years and only runs with ruby 1.8. For an actively-developer alternative look at tarsnap and others. @@ -411,7 +411,7 @@ nginx.override { - ruby_1_8 has been removed as it's not + ruby_1_8 has been removed as it’s not supported from upstream anymore and probably contains security issues. @@ -439,7 +439,7 @@ nginx.override { The Ctrl+Alt+Backspace key combination no - longer kills the X server by default. There's a new option + longer kills the X server by default. There’s a new option services.xserver.enableCtrlAltBackspace allowing to enable the combination again. @@ -457,7 +457,7 @@ nginx.override { /var/lib/postfix. Old configurations are migrated automatically. service.postfix module has also received many improvements, such as correct - directories' access rights, new aliasFiles + directories’ access rights, new aliasFiles and mapFiles options and more. @@ -468,7 +468,7 @@ nginx.override { continue to work, but print a warning, until the 16.09 release. An example of the new style: - + { fileSystems."/example" = { device = "/dev/sdc"; @@ -497,7 +497,7 @@ nginx.override { There are also Gutenprint improvements; in particular, a new option services.printing.gutenprint is added - to enable automatic updating of Gutenprint PPMs; it's greatly + to enable automatic updating of Gutenprint PPMs; it’s greatly recommended to enable it instead of adding gutenprint to the drivers list. @@ -524,7 +524,7 @@ nginx.override { used input method name, "ibus" for ibus. An example of the new style: - + { i18n.inputMethod.enabled = "ibus"; i18n.inputMethod.ibus.engines = with pkgs.ibus-engines; [ anthy mozc ]; @@ -533,7 +533,7 @@ nginx.override { That is equivalent to the old version: - + { programs.ibus.enable = true; programs.ibus.plugins = with pkgs; [ ibus-anthy mozc ]; @@ -545,7 +545,7 @@ nginx.override { services.udev.extraRules option now writes rules to 99-local.rules instead of 10-local.rules. This makes all the user rules - apply after others, so their results wouldn't be overriden by + apply after others, so their results wouldn’t be overridden by anything else. @@ -587,7 +587,7 @@ $TTL 1800 point to exact folder where syncthing is writing to. Example configuration should look something like: - + { services.syncthing = { enable = true; @@ -632,8 +632,8 @@ error: path ‘/nix/store/*-broadcom-sta-*’ does not exist and cannot be creat The services.xserver.startGnuPGAgent option has been removed. GnuPG 2.1.x changed the way the gpg-agent works, and that new approach no longer requires (or even - supports) the "start everything as a child of the - agent" scheme we've implemented in NixOS for older + supports) the start everything as a child of the + agent scheme we’ve implemented in NixOS for older versions. To configure the gpg-agent for your X session, add the following code to ~/.bashrc or some file that’s sourced when your shell is started: @@ -670,7 +670,7 @@ export GPG_TTY The gpg-agent(1) man page has more details - about this subject, i.e. in the "EXAMPLES" section. + about this subject, i.e. in the EXAMPLES section. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1609.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1609.section.xml index 0fba40a0e7..c2adbc88f5 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1609.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1609.section.xml @@ -78,7 +78,7 @@ LTS Haskell package set. That support has been dropped. The previously provided haskell.packages.lts-x_y package sets still exist in name to aviod breaking user code, - but these package sets don't actually contain the versions + but these package sets don’t actually contain the versions mandated by the corresponding LTS release. Instead, our package set it loosely based on the latest available LTS release, i.e. LTS 7.x at the time of this writing. New releases of NixOS and @@ -119,7 +119,7 @@ - Gitlab's maintainance script gitlab-runner + Gitlab’s maintainance script gitlab-runner was removed and split up into the more clearer gitlab-run and gitlab-rake scripts, because gitlab-runner is a component @@ -164,7 +164,7 @@ goPackages was replaced with separated Go applications in appropriate nixpkgs - categories. Each Go package uses its own dependency set. There's + categories. Each Go package uses its own dependency set. There’s also a new go2nix tool introduced to generate a Go package definition from its Go source automatically. @@ -192,7 +192,7 @@ interface has been streamlined. Desktop users should be able to simply set - + { security.grsecurity.enable = true; } diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1703.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1703.section.xml index 1119ec53df..8667063f37 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1703.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1703.section.xml @@ -22,7 +22,7 @@ - The default desktop environment now is KDE's Plasma 5. KDE 4 + The default desktop environment now is KDE’s Plasma 5. KDE 4 has been removed @@ -560,7 +560,7 @@ Parsoid service now uses YAML configuration format. service.parsoid.interwikis is now called service.parsoid.wikis and is a list of - either API URLs or attribute sets as specified in parsoid's + either API URLs or attribute sets as specified in parsoid’s documentation. @@ -581,7 +581,7 @@ service.nylon is now declared using named instances. As an example: - + { services.nylon = { enable = true; @@ -594,7 +594,7 @@ should be replaced with: - + { services.nylon.myvpn = { enable = true; @@ -615,7 +615,7 @@ overlays. For example, the following code: - + let pkgs = import <nixpkgs> {}; in @@ -624,7 +624,7 @@ in should be replaced by: - + let pkgs = import <nixpkgs> {}; in @@ -647,7 +647,7 @@ in local_recipient_maps is not set to empty - value by Postfix service. It's an insecure default as stated + value by Postfix service. It’s an insecure default as stated by Postfix documentation. Those who want to retain this setting need to set it via services.postfix.extraConfig. @@ -669,7 +669,7 @@ in The socket handling of the services.rmilter - module has been fixed and refactored. As rmilter doesn't + module has been fixed and refactored. As rmilter doesn’t support binding to more than one socket, the options bindUnixSockets and bindInetSockets have been replaced by @@ -729,7 +729,7 @@ in improves visual consistency and makes Java follow system font style, improving the situation on HighDPI displays. This has a cost of increased closure size; for server and other headless - workloads it's recommended to use + workloads it’s recommended to use jre_headless. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1709.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1709.section.xml index 8f0efe816e..849ec868c7 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1709.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1709.section.xml @@ -26,10 +26,10 @@ The module option services.xserver.xrandrHeads now causes the first head specified in this list to be set as the primary - head. Apart from that, it's now possible to also set + head. Apart from that, it’s now possible to also set additional options by using an attribute set, for example: - + { services.xserver.xrandrHeads = [ "HDMI-0" { @@ -543,7 +543,7 @@ - Radicale's default package has changed from 1.x to 2.x. + Radicale’s default package has changed from 1.x to 2.x. Instructions to migrate can be found here . It is also possible to use the newer version by @@ -582,7 +582,7 @@ - flexget's state database cannot be upgraded + flexget’s state database cannot be upgraded to its new internal format, requiring removal of any existing db-config.sqlite which will be automatically recreated. @@ -590,9 +590,9 @@ - The ipfs service now doesn't ignore the - dataDir option anymore. If you've ever set - this option to anything other than the default you'll have to + The ipfs service now doesn’t ignore the + dataDir option anymore. If you’ve ever set + this option to anything other than the default you’ll have to either unset it (so the default gets used) or migrate the old data manually with @@ -651,22 +651,22 @@ rmdir /var/lib/ipfs/.ipfs - cc-wrapper's setup-hook now exports a + cc-wrappers setup-hook now exports a number of environment variables corresponding to binutils binaries, (e.g. LD, STRIP, RANLIB, etc). - This is done to prevent packages' build systems guessing, - which is harder to predict, especially when cross-compiling. - However, some packages have broken due to this—their build - systems either not supporting, or claiming to support without - adequate testing, taking such environment variables as - parameters. + This is done to prevent packages build systems + guessing, which is harder to predict, especially when + cross-compiling. However, some packages have broken due to + this—their build systems either not supporting, or claiming to + support without adequate testing, taking such environment + variables as parameters. services.firefox.syncserver now runs by - default as a non-root user. To accomodate this change, the + default as a non-root user. To accommodate this change, the default sqlite database location has also been changed. Migration should work automatically. Refer to the description of the options for more details. @@ -688,10 +688,10 @@ rmdir /var/lib/ipfs/.ipfs - grsecurity/PaX support has been dropped, following upstream's + grsecurity/PaX support has been dropped, following upstream’s decision to cease free support. See - upstream's announcement for more information. No + upstream’s announcement for more information. No complete replacement for grsecurity/PaX is available presently. @@ -794,7 +794,7 @@ FLUSH PRIVILEGES; Modules can now be disabled by using - disabledModules, allowing another to take it's place. + disabledModules, allowing another to take it’s place. This can be used to import a set of modules from another channel while keeping the rest of the system on a stable release. @@ -808,7 +808,7 @@ FLUSH PRIVILEGES; provided by fontconfig-penultimate, replacing fontconfig-ultimate; the new defaults are less invasive and provide rendering that is more consistent with other systems - and hopefully with each font designer's intent. Some + and hopefully with each font designer’s intent. Some system-wide configuration has been removed from the Fontconfig NixOS module where user Fontconfig settings are available. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1803.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1803.section.xml index 910cad467e..f197c52906 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1803.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1803.section.xml @@ -16,9 +16,9 @@ Platform support: x86_64-linux and x86_64-darwin since release - time (the latter isn't NixOS, really). Binaries for + time (the latter isn’t NixOS, really). Binaries for aarch64-linux are available, but no channel exists yet, as - it's waiting for some test fixes, etc. + it’s waiting for some test fixes, etc. @@ -495,11 +495,11 @@ The propagation logic has been changed. The new logic, along with new types of dependencies that go with, is thoroughly - documented in the "Specifying dependencies" section - of the "Standard Environment" chapter of the nixpkgs - manual. The old logic isn't but is easy to describe: - dependencies were propagated as the same type of dependency no - matter what. In practice, that means that many + documented in the Specifying dependencies + section of the Standard Environment chapter of + the nixpkgs manual. The old logic isn’t but is easy to + describe: dependencies were propagated as the same type of + dependency no matter what. In practice, that means that many propagatedNativeBuildInputs should instead be propagatedBuildInputs. Thankfully, that was and is the least used type of dependency. Also, it means @@ -541,7 +541,7 @@ Previously, if other options in the Postfix module like services.postfix.useSrs were set and the user set config options that were also set by such options, - the resulting config wouldn't include all options that were + the resulting config wouldn’t include all options that were needed. They are now merged correctly. If config options need to be overridden, lib.mkForce or lib.mkOverride can be used. @@ -626,7 +626,7 @@ if config.networking.domain is set, matomo.${config.networking.hostName} if it is not set. If you change your - serverName, remember you'll need to + serverName, remember you’ll need to update the trustedHosts[] array in /var/lib/matomo/config/config.ini.php as well. @@ -793,7 +793,7 @@ services.btrfs.autoScrub has been added, to periodically check btrfs filesystems for data corruption. If - there's a correct copy available, it will automatically repair + there’s a correct copy available, it will automatically repair corrupted blocks. @@ -830,7 +830,7 @@ In order to have the previous default configuration add - + { services.xserver.displayManager.lightdm.greeters.gtk.indicators = [ "~host" "~spacer" diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1809.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1809.section.xml index aa4637a99b..4bbfa7be39 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1809.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1809.section.xml @@ -54,7 +54,7 @@ For example - + { programs.firejail = { enable = true; @@ -523,8 +523,8 @@ $ nix-instantiate -E '(import <nixpkgsunstable> {}).gitFull' The netcat package is now taken directly - from OpenBSD's libressl, instead of relying - on Debian's fork. The new version should be very close to the + from OpenBSD’s libressl, instead of relying + on Debian’s fork. The new version should be very close to the old version, but there are some minor differences. Importantly, flags like -b, -q, -C, and -Z are no longer accepted by the nc command. @@ -533,7 +533,7 @@ $ nix-instantiate -E '(import <nixpkgsunstable> {}).gitFull' The services.docker-registry.extraConfig - object doesn't contain environment variables anymore. Instead + object doesn’t contain environment variables anymore. Instead it needs to provide an object structure that can be mapped onto the YAML configuration defined in the @@ -543,7 +543,7 @@ $ nix-instantiate -E '(import <nixpkgsunstable> {}).gitFull' gnucash has changed from version 2.4 to - 3.x. If you've been using gnucash (version + 3.x. If you’ve been using gnucash (version 2.4) instead of gnucash26 (version 2.6) you must open your Gnucash data file(s) with gnucash26 and then save them to upgrade the @@ -695,7 +695,7 @@ $ nix-instantiate -E '(import <nixpkgsunstable> {}).gitFull' A NixOS system can now be constructed more easily based on a preexisting invocation of Nixpkgs. For example: - + { inherit (pkgs.nixos { boot.loader.grub.enable = false; @@ -791,7 +791,7 @@ $ nix-instantiate -E '(import <nixpkgsunstable> {}).gitFull' An example usage of this would be: - + { config, ... }: { @@ -874,7 +874,7 @@ $ nix-instantiate -E '(import <nixpkgsunstable> {}).gitFull' The programs.screen module provides allows to configure /etc/screenrc, however the module behaved fairly counterintuitive as the config exists, - but the package wasn't available. Since 18.09 + but the package wasn’t available. Since 18.09 pkgs.screen will be added to environment.systemPackages. @@ -920,7 +920,7 @@ $ nix-instantiate -E '(import <nixpkgsunstable> {}).gitFull' NixOS option descriptions are now automatically broken up into individual paragraphs if the text contains two consecutive - newlines, so it's no longer necessary to use + newlines, so it’s no longer necessary to use </para><para> to start a new paragraph. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1903.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1903.section.xml index f26e68e132..ed26f2ba45 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1903.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1903.section.xml @@ -29,9 +29,9 @@ By default, services.xserver.desktopManager.pantheon - enables LightDM as a display manager, as pantheon's screen + enables LightDM as a display manager, as pantheon’s screen locking implementation relies on it. Because of that it is - recommended to leave LightDM enabled. If you'd like to + recommended to leave LightDM enabled. If you’d like to disable it anyway, set services.xserver.displayManager.lightdm.enable to false and enable your preferred @@ -39,8 +39,8 @@ - Also note that Pantheon's LightDM greeter is not enabled by - default, because it has numerous issues in NixOS and isn't + Also note that Pantheon’s LightDM greeter is not enabled by + default, because it has numerous issues in NixOS and isn’t optimal for use here yet. @@ -200,7 +200,7 @@ The ntp module now has sane default - restrictions. If you're relying on the previous defaults, + restrictions. If you’re relying on the previous defaults, which permitted all queries and commands from all firewall-permitted sources, you can set services.ntp.restrictDefault and @@ -271,7 +271,7 @@ The versioned postgresql have been renamed - to use underscore number seperators. For example, + to use underscore number separators. For example, postgresql96 has been renamed to postgresql_9_6. @@ -342,7 +342,7 @@ preserved when also setting interface specific rules such as networking.firewall.interfaces.en0.allow*. These rules continue to use the pseudo device - "default" + default (networking.firewall.interfaces.default.*), and assigning to this pseudo device will override the (networking.firewall.allow*) options. @@ -360,9 +360,9 @@ presence of services.sssd.enable = true because nscd caching would interfere with sssd in unpredictable ways as well. Because - we're using nscd not for caching, but for convincing glibc to + we’re using nscd not for caching, but for convincing glibc to find NSS modules in the nix store instead of an absolute path, - we have decided to disable caching globally now, as it's + we have decided to disable caching globally now, as it’s usually not the behaviour the user wants and can lead to surprising behaviour. Furthermore, negative caching of host lookups is also disabled now by default. This should fix the @@ -374,7 +374,7 @@ setting the services.nscd.config option with the desired caching parameters. - + { services.nscd.config = '' @@ -453,7 +453,7 @@ with its control field set to sufficient instead of required, so that password managed only by later PAM password modules are being executed. - Previously, for example, changing an LDAP account's password + Previously, for example, changing an LDAP account’s password through PAM was not possible: the whole password module verification was exited prematurely by pam_unix, preventing @@ -497,11 +497,11 @@ the last version to accept self-signed certificates. As such, it is now recommended to use a proper certificate - verified by a root CA (for example Let's Encrypt). The new + verified by a root CA (for example Let’s Encrypt). The new manual chapter on Matrix contains a working example of using nginx as a reverse proxy in front of matrix-synapse, - using Let's Encrypt certificates. + using Let’s Encrypt certificates. @@ -682,7 +682,7 @@ all config options provided by the current upstream version as service options. Additionally the ndppd - package doesn't contain the systemd unit configuration from + package doesn’t contain the systemd unit configuration from upstream anymore, the unit is completely configured by the NixOS module now. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1909.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1909.section.xml index 83cd649f4e..3bf83e1ecc 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1909.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-1909.section.xml @@ -82,13 +82,13 @@ - We've updated to Xfce 4.14, which brings a new module + We’ve updated to Xfce 4.14, which brings a new module services.xserver.desktopManager.xfce4-14. - If you'd like to upgrade, please switch from the + If you’d like to upgrade, please switch from the services.xserver.desktopManager.xfce module - as it will be deprecated in a future release. They're - incompatibilities with the current Xfce module; it doesn't - support thunarPlugins and it isn't + as it will be deprecated in a future release. They’re + incompatibilities with the current Xfce module; it doesn’t + support thunarPlugins and it isn’t recommended to use services.xserver.desktopManager.xfce and services.xserver.desktopManager.xfce4-14 @@ -125,7 +125,7 @@ With these options we hope to give users finer grained control - over their systems. Prior to this change you'd either have to + over their systems. Prior to this change you’d either have to manually disable options or use environment.gnome3.excludePackages which only excluded the optional applications. @@ -138,7 +138,7 @@ Orthogonal to the previous changes to the GNOME 3 desktop - manager module, we've updated all default services and + manager module, we’ve updated all default services and applications to match as close as possible to a default reference GNOME 3 experience. @@ -295,7 +295,7 @@ services.xserver.desktopManager.mate Note Mate uses programs.system-config-printer as it - doesn't use it as a service, but its graphical interface + doesn’t use it as a service, but its graphical interface directly. @@ -347,7 +347,7 @@ services.prometheus.alertmanager.user and services.prometheus.alertmanager.group have been removed because the alertmanager service is now using - systemd's + systemd’s DynamicUser mechanism which obviates these options. @@ -366,7 +366,7 @@ The services.nzbget.configFile and services.nzbget.openFirewall options were removed as they are managed internally by the nzbget. The - services.nzbget.dataDir option hadn't + services.nzbget.dataDir option hadn’t actually been used by the module for some time and so was removed as cleanup. @@ -475,7 +475,7 @@ Make sure you set the _netdev option for each of the file systems referring to block devices provided by the autoLuks module. Not doing this might render the system - in a state where it doesn't boot anymore. + in a state where it doesn’t boot anymore. If you are actively using the autoLuks @@ -498,7 +498,7 @@ The prometheus-nginx-exporter package now - uses the offical exporter provided by NGINX Inc. Its metrics + uses the official exporter provided by NGINX Inc. Its metrics are differently structured and are incompatible to the old ones. For information about the metrics, have a look at the official @@ -524,7 +524,7 @@ By default, prometheus exporters are now run with DynamicUser enabled. Exporters that need a - real user, now run under a seperate user and group which + real user, now run under a separate user and group which follow the pattern <exporter-name>-exporter, instead of the previous default nobody and @@ -667,7 +667,7 @@ instead of depending on the catch-all acme-certificates.target. This target unit was also removed from the codebase. This will mean nginx will - no longer depend on certificates it isn't explicitly managing + no longer depend on certificates it isn’t explicitly managing and fixes a bug with certificate renewal ordering racing with nginx restarting which could lead to nginx getting in a broken state as described at @@ -687,8 +687,8 @@ services.xserver.desktopManager.xterm is now disabled by default if stateVersion is 19.09 or higher. Previously the xterm desktopManager was - enabled when xserver was enabled, but it isn't useful for all - people so it didn't make sense to have any desktopManager + enabled when xserver was enabled, but it isn’t useful for all + people so it didn’t make sense to have any desktopManager enabled default. @@ -696,7 +696,7 @@ The WeeChat plugin pkgs.weechatScripts.weechat-xmpp has been - removed as it doesn't receive any updates from upstream and + removed as it doesn’t receive any updates from upstream and depends on outdated Python2-based modules. @@ -744,11 +744,11 @@ services.gitlab.secrets.dbFile, services.gitlab.secrets.otpFile and services.gitlab.secrets.jwsFile). This was - done so that secrets aren't stored in the world-readable nix - store, but means that for each option you'll have to create a - file with the same exact string, add "File" to the - end of the option name, and change the definition to a string - pointing to the corresponding file; e.g. + done so that secrets aren’t stored in the world-readable nix + store, but means that for each option you’ll have to create a + file with the same exact string, add File to + the end of the option name, and change the definition to a + string pointing to the corresponding file; e.g. services.gitlab.databasePassword = "supersecurepassword" becomes services.gitlab.databasePasswordFile = "/path/to/secret_file" @@ -791,7 +791,7 @@ The nodejs-11_x package has been removed as - it's EOLed by upstream. + it’s EOLed by upstream. @@ -961,7 +961,7 @@ from the upstream default speex-float-1 to speex-float-5. Be aware that low-powered ARM-based and MIPS-based boards will struggle with this so - you'll need to set + you’ll need to set hardware.pulseaudio.daemon.config.resample-method back to speex-float-1. @@ -1004,7 +1004,7 @@ - It's now possible to change configuration in + It’s now possible to change configuration in services.nextcloud after the initial deploy since all config parameters are persisted in an additional config file generated by the @@ -1178,7 +1178,7 @@ release notes for details. The mgr dashboard as well as osds backed by loop-devices is no longer explicitly supported by - the package and module. Note: There's been some issues with + the package and module. Note: There’s been some issues with python-cherrypy, which is used by the dashboard and prometheus mgr modules (and possibly others), hence 0000-dont-check-cherrypy-version.patch. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2003.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2003.section.xml index 53e6e1329a..35fbb7447c 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2003.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2003.section.xml @@ -73,7 +73,7 @@ The graphical installer image starts the graphical session - automatically. Before you'd be greeted by a tty and asked to + automatically. Before you’d be greeted by a tty and asked to enter systemctl start display-manager. It is now possible to disable the display-manager from running by selecting the Disable display-manager quirk @@ -93,7 +93,7 @@ services.xserver.desktopManager.pantheon.enable, we now default to also use - Pantheon's newly designed greeter . Contrary to NixOS's + Pantheon’s newly designed greeter . Contrary to NixOS’s usual update policy, Pantheon will receive updates during the cycle of NixOS 20.03 when backwards compatible. @@ -133,7 +133,7 @@ option to improve support for upstream session files. If you used something like: - + { services.xserver.desktopManager.default = "xfce"; services.xserver.windowManager.default = "icewm"; @@ -142,7 +142,7 @@ you should change it to: - + { services.xserver.displayManager.defaultSession = "xfce+icewm"; } @@ -196,7 +196,7 @@ See https://github.com/NixOS/nixpkgs/pull/71684 for details. - UPower's configuration is now managed by NixOS and can be + UPower’s configuration is now managed by NixOS and can be customized via services.upower. @@ -505,7 +505,7 @@ See https://github.com/NixOS/nixpkgs/pull/71684 for details. #71106. - We already don't support the global + We already don’t support the global networking.useDHCP, networking.defaultGateway and @@ -522,7 +522,7 @@ See https://github.com/NixOS/nixpkgs/pull/71684 for details. The stdenv now runs all bash with set -u, to catch the use of undefined variables. Before, it itself used set -u but was careful to unset it so - other packages' code ran as before. Now, all bash code is held + other packages’ code ran as before. Now, all bash code is held to the same high standard, and the rather complex stateful manipulation of the options can be discarded. @@ -558,7 +558,7 @@ See https://github.com/NixOS/nixpkgs/pull/71684 for details. xfceUnstable all now point to the latest Xfce 4.14 packages. And in the future NixOS releases will be the latest released version of Xfce available at the time of - the release's development (if viable). + the release’s development (if viable). @@ -662,7 +662,7 @@ See https://github.com/NixOS/nixpkgs/pull/71684 for details. The dump1090 derivation has been changed to - use FlightAware's dump1090 as its upstream. However, this + use FlightAware’s dump1090 as its upstream. However, this version does not have an internal webserver anymore. The assets in the share/dump1090 directory of the derivation can be used in conjunction with an external @@ -821,7 +821,7 @@ See https://github.com/NixOS/nixpkgs/pull/71684 for details. is a loaOf option that is commonly used as follows: - + { users.users = [ { name = "me"; @@ -836,7 +836,7 @@ See https://github.com/NixOS/nixpkgs/pull/71684 for details. value of name as the name of the attribute set: - + { users.users.me = { description = "My personal user."; @@ -890,7 +890,7 @@ See https://github.com/NixOS/nixpkgs/pull/71684 for details. Theservices.buildkite-agent.openssh.publicKeyPath - option has been removed, as it's not necessary to deploy + option has been removed, as it’s not necessary to deploy public keys to clone private repositories. @@ -932,7 +932,7 @@ See https://github.com/NixOS/nixpkgs/pull/71684 for details. The services.xserver.displayManager.auto module has been removed. It was only intended for use in internal NixOS tests, and gave the false impression of it - being a special display manager when it's actually LightDM. + being a special display manager when it’s actually LightDM. Please use the services.xserver.displayManager.lightdm.autoLogin options instead, or any other display manager in NixOS as they @@ -940,7 +940,7 @@ See https://github.com/NixOS/nixpkgs/pull/71684 for details. because it permitted root auto-login you can override the lightdm-autologin pam module like: - + { security.pam.services.lightdm-autologin.text = lib.mkForce '' auth requisite pam_nologin.so @@ -962,13 +962,13 @@ See https://github.com/NixOS/nixpkgs/pull/71684 for details. auth required pam_succeed_if.so quiet - line, where default it's: + line, where default it’s: auth required pam_succeed_if.so uid >= 1000 quiet - not permitting users with uid's below 1000 (like root). All + not permitting users with uid’s below 1000 (like root). All other display managers in NixOS are configured like this. @@ -1004,7 +1004,7 @@ auth required pam_succeed_if.so quiet Additionally, some Postfix configuration must now be set manually instead of automatically by the Mailman module: - + { services.postfix.relayDomains = [ "hash:/var/lib/mailman/data/postfix_domains" ]; services.postfix.config.transport_maps = [ "hash:/var/lib/mailman/data/postfix_lmtp" ]; @@ -1051,14 +1051,14 @@ auth required pam_succeed_if.so quiet The *psu versions of oraclejdk8 have been - removed as they aren't provided by upstream anymore. + removed as they aren’t provided by upstream anymore. The services.dnscrypt-proxy module has been removed as it used the deprecated version of dnscrypt-proxy. - We've added + We’ve added services.dnscrypt-proxy2.enable to use the supported version. This module supports configuration via the Nix attribute set @@ -1066,7 +1066,7 @@ auth required pam_succeed_if.so quiet or by passing a TOML configuration file via services.dnscrypt-proxy2.configFile. - + { # Example configuration: services.dnscrypt-proxy2.enable = true; @@ -1093,7 +1093,7 @@ auth required pam_succeed_if.so quiet - sqldeveloper_18 has been removed as it's not maintained + sqldeveloper_18 has been removed as it’s not maintained anymore, sqldeveloper has been updated to version 19.4. Please note that this means that this means that the oraclejdk is now required. For further @@ -1110,7 +1110,7 @@ auth required pam_succeed_if.so quiet the different lists of dependencies mashed together as one big list, and then partitioning into Haskell and non-Hakell dependencies, they work from the original many different - dependency parameters and don't need to algorithmically + dependency parameters and don’t need to algorithmically partition anything. @@ -1123,7 +1123,7 @@ auth required pam_succeed_if.so quiet - The gcc-snapshot-package has been removed. It's marked as + The gcc-snapshot-package has been removed. It’s marked as broken for >2 years and used to point to a fairly old snapshot from the gcc7-branch. @@ -1158,7 +1158,7 @@ auth required pam_succeed_if.so quiet nextcloud has been updated to v18.0.2. This - means that users from NixOS 19.09 can't upgrade directly since + means that users from NixOS 19.09 can’t upgrade directly since you can only move one version forward and 19.09 uses v16.0.8. @@ -1181,7 +1181,7 @@ auth required pam_succeed_if.so quiet Existing setups will be detected using system.stateVersion: by default, nextcloud17 will be used, but will raise a - warning which notes that after that deploy it's + warning which notes that after that deploy it’s recommended to update to the latest stable version (nextcloud18) by declaring the newly introduced setting services.nextcloud.package. @@ -1194,7 +1194,7 @@ auth required pam_succeed_if.so quiet get an evaluation error by default. This is done to ensure that our package-option - doesn't select an older version by accident. It's + doesn’t select an older version by accident. It’s recommended to use pkgs.nextcloud18 or to set package to pkgs.nextcloud explicitly. @@ -1203,7 +1203,7 @@ auth required pam_succeed_if.so quiet - Please note that if you're coming from + Please note that if you’re coming from 19.03 or older, you have to manually upgrade to 19.09 first to upgrade your server to Nextcloud v16. @@ -1215,7 +1215,7 @@ auth required pam_succeed_if.so quiet Hydra has gained a massive performance improvement due to some database schema changes by adding several IDs and - better indexing. However, it's necessary to upgrade Hydra in + better indexing. However, it’s necessary to upgrade Hydra in multiple steps: @@ -1229,7 +1229,7 @@ auth required pam_succeed_if.so quiet when upgrading. Otherwise, the package can be deployed using the following config: - + { pkgs, ... }: { services.hydra.package = pkgs.hydra-migration; } @@ -1266,12 +1266,12 @@ $ hydra-backfill-ids stateVersion is set to 20.03 or greater, hydra-unstable will be used automatically! This will break - your setup if you didn't run the migration. + your setup if you didn’t run the migration. Please note that Hydra is currently not available with - nixStable as this doesn't compile anymore. + nixStable as this doesn’t compile anymore. @@ -1281,7 +1281,7 @@ $ hydra-backfill-ids assertion error will be thrown. To circumvent this, you need to set services.hydra.package - to pkgs.hydra explicitly and make sure you know what you're + to pkgs.hydra explicitly and make sure you know what you’re doing! @@ -1319,7 +1319,7 @@ $ hydra-backfill-ids To continue to use the old approach, you can configure: - + { services.nginx.appendConfig = let cfg = config.services.nginx; in ''user ${cfg.user} ${cfg.group};''; systemd.services.nginx.serviceConfig.User = lib.mkForce "root"; @@ -1413,14 +1413,14 @@ $ hydra-backfill-ids - If you use sqlite3 you don't need to do + If you use sqlite3 you don’t need to do anything. If you use postgresql on a different - server, you don't need to change anything as well since + server, you don’t need to change anything as well since this module was never designed to configure remote databases. @@ -1432,7 +1432,7 @@ $ hydra-backfill-ids older, you simply need to enable postgresql-support explicitly: - + { ... }: { services.matrix-synapse = { enable = true; @@ -1460,7 +1460,7 @@ $ hydra-backfill-ids nixos-unstable after the 19.09-release, your database is misconfigured due to a regression in NixOS. For now, - matrix-synapse will startup with a warning, but it's + matrix-synapse will startup with a warning, but it’s recommended to reconfigure the database to set the values LC_COLLATE and LC_CTYPE to @@ -1473,7 +1473,7 @@ $ hydra-backfill-ids systemd.network.links option is now respected even when systemd-networkd - is disabled. This mirrors the behaviour of systemd - It's udev + is disabled. This mirrors the behaviour of systemd - It’s udev that parses .link files, not systemd-networkd. @@ -1486,8 +1486,8 @@ $ hydra-backfill-ids Please note that mongodb has been relicensed under their own sspl-license. - Since it's not entirely free and not OSI-approved, it's - listed as non-free. This means that Hydra doesn't provide + Since it’s not entirely free and not OSI-approved, it’s + listed as non-free. This means that Hydra doesn’t provide prebuilt mongodb-packages and needs to be built locally. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2009.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2009.section.xml index edebd92b32..a1b007e711 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2009.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2009.section.xml @@ -722,7 +722,7 @@ See Authentication from MariaDB 10.4. unix_socket auth plugin does not use - a password, and uses the connecting user's UID instead. When a + a password, and uses the connecting user’s UID instead. When a new MariaDB data directory is initialized, two MariaDB users are created and can be used with new unix_socket auth plugin, as well as traditional mysql_native_password plugin: @@ -730,7 +730,7 @@ traditional mysql_native_password plugin method, one must run the following: - + { services.mysql.initialScript = pkgs.writeText "mariadb-init.sql" '' ALTER USER root@localhost IDENTIFIED VIA mysql_native_password USING PASSWORD("verysecret"); @@ -755,7 +755,7 @@ services.mysql.initialScript = pkgs.writeText "mariadb-init.sql" '' allow MySQL to read from /home and /tmp directories when using LOAD DATA INFILE - + { systemd.services.mysql.serviceConfig.ProtectHome = lib.mkForce "read-only"; } @@ -766,7 +766,7 @@ services.mysql.initialScript = pkgs.writeText "mariadb-init.sql" '' SELECT * INTO OUTFILE, assuming the mysql user has write access to /var/data - + { systemd.services.mysql.serviceConfig.ReadWritePaths = [ "/var/data" ]; } @@ -864,7 +864,7 @@ WHERE table_schema = "zabbix" AND COLLATION_NAME = "utf8_general_ buildGoModule now internally creates a vendor directory in the source tree for downloaded modules - instead of using go's + instead of using go’s module proxy protocol. This storage format is simpler and therefore less likely to break with future versions of go. As @@ -885,7 +885,7 @@ WHERE table_schema = "zabbix" AND COLLATION_NAME = "utf8_general_ phantomJsSupport = true to the package instantiation: - + { services.grafana.package = pkgs.grafana.overrideAttrs (oldAttrs: rec { phantomJsSupport = true; @@ -941,24 +941,24 @@ WHERE table_schema = "zabbix" AND COLLATION_NAME = "utf8_general_ If you used the boot.initrd.network.ssh.host*Key options, - you'll get an error explaining how to convert your host keys + you’ll get an error explaining how to convert your host keys and migrate to the new boot.initrd.network.ssh.hostKeys option. - Otherwise, if you don't have any host keys set, you'll need to + Otherwise, if you don’t have any host keys set, you’ll need to generate some; see the hostKeys option documentation for instructions. - Since this release there's an easy way to customize your PHP + Since this release there’s an easy way to customize your PHP install to get a much smaller base PHP with only wanted extensions enabled. See the following snippet installing a smaller PHP with the extensions imagick, opcache, pdo and pdo_mysql loaded: - + { environment.systemPackages = [ (pkgs.php.withExtensions @@ -973,7 +973,7 @@ WHERE table_schema = "zabbix" AND COLLATION_NAME = "utf8_general_ } - The default php attribute hasn't lost any + The default php attribute hasn’t lost any extensions. The opcache extension has been added. All upstream PHP extensions are available under php.extensions.<name?>. @@ -997,7 +997,7 @@ WHERE table_schema = "zabbix" AND COLLATION_NAME = "utf8_general_ The remaining configuration flags can now be set directly on the php attribute. For example, instead of - + { php.override { config.php.embed = true; @@ -1008,7 +1008,7 @@ WHERE table_schema = "zabbix" AND COLLATION_NAME = "utf8_general_ you should now write - + { php.override { embedSupport = true; @@ -1062,7 +1062,7 @@ WHERE table_schema = "zabbix" AND COLLATION_NAME = "utf8_general_ writing to other folders, use systemd.services.nginx.serviceConfig.ReadWritePaths - + { systemd.services.nginx.serviceConfig.ReadWritePaths = [ "/var/www" ]; } @@ -1076,7 +1076,7 @@ WHERE table_schema = "zabbix" AND COLLATION_NAME = "utf8_general_ docs for details). If you require serving files from home directories, you may choose to set e.g. - + { systemd.services.nginx.serviceConfig.ProtectHome = "read-only"; } @@ -1093,7 +1093,7 @@ WHERE table_schema = "zabbix" AND COLLATION_NAME = "utf8_general_ Replace a nesting.clone entry with: - + { specialisation.example-sub-configuration = { configuration = { @@ -1104,7 +1104,7 @@ WHERE table_schema = "zabbix" AND COLLATION_NAME = "utf8_general_ Replace a nesting.children entry with: - + { specialisation.example-sub-configuration = { inheritParentConfig = false; @@ -1162,7 +1162,7 @@ $ sudo /run/current-system/fine-tune/child-1/bin/switch-to-configuration test The systemd-networkd option systemd.network.networks.<name>.dhcp.CriticalConnection - has been removed following upstream systemd's deprecation of + has been removed following upstream systemd’s deprecation of the same. It is recommended to use systemd.network.networks.<name>.networkConfig.KeepConfiguration instead. See systemd.network 5 for details. @@ -1174,7 +1174,7 @@ $ sudo /run/current-system/fine-tune/child-1/bin/switch-to-configuration test systemd.network.networks._name_.dhcpConfig has been renamed to systemd.network.networks.name.dhcpV4Config - following upstream systemd's documentation change. See + following upstream systemd’s documentation change. See systemd.network 5 for details. @@ -1283,7 +1283,7 @@ $ sudo /run/current-system/fine-tune/child-1/bin/switch-to-configuration test The DNSChain package and NixOS module have been removed from Nixpkgs as the - software is unmaintained and can't be built. For more + software is unmaintained and can’t be built. For more information see issue #89205. @@ -1350,7 +1350,7 @@ $ sudo /run/current-system/fine-tune/child-1/bin/switch-to-configuration test - Radicale's default package has changed from 2.x to 3.x. An + Radicale’s default package has changed from 2.x to 3.x. An upgrade checklist can be found here. You can use the newer version in the NixOS service by setting @@ -1385,7 +1385,7 @@ $ sudo /run/current-system/fine-tune/child-1/bin/switch-to-configuration test multi-instance config with an existing bitcoind data directory and user, you have to adjust the original config, e.g.: - + { services.bitcoind = { enable = true; @@ -1397,7 +1397,7 @@ $ sudo /run/current-system/fine-tune/child-1/bin/switch-to-configuration test To something similar: - + { services.bitcoind.mainnet = { enable = true; @@ -1447,7 +1447,7 @@ $ sudo /run/current-system/fine-tune/child-1/bin/switch-to-configuration test the original SSL settings, you have to adjust the original config, e.g.: - + { services.dokuwiki = { enable = true; @@ -1458,7 +1458,7 @@ $ sudo /run/current-system/fine-tune/child-1/bin/switch-to-configuration test To something similar: - + { services.dokuwiki."mywiki" = { enable = true; @@ -1472,8 +1472,8 @@ $ sudo /run/current-system/fine-tune/child-1/bin/switch-to-configuration test The base package has also been upgraded to the 2020-07-29 - "Hogfather" release. Plugins might be incompatible - or require upgrading. + Hogfather release. Plugins might be + incompatible or require upgrading. @@ -1492,7 +1492,7 @@ $ sudo /run/current-system/fine-tune/child-1/bin/switch-to-configuration test option is (/var/db/postgresql) and then explicitly set this value to maintain compatibility: - + { services.postgresql.dataDir = "/var/db/postgresql"; } @@ -1587,7 +1587,7 @@ CREATE ROLE postgres LOGIN SUPERUSER; The security.rngd service is now disabled - by default. This choice was made because there's krngd in the + by default. This choice was made because there’s krngd in the linux kernel space making it (for most usecases) functionally redundent. @@ -1609,13 +1609,13 @@ CREATE ROLE postgres LOGIN SUPERUSER; will be EOL (end of life) within the lifetime of 20.09. - It's necessary to upgrade to nextcloud19: + It’s necessary to upgrade to nextcloud19: From nextcloud17, you have to upgrade to nextcloud18 first - as Nextcloud doesn't allow going multiple major revisions + as Nextcloud doesn’t allow going multiple major revisions forward in a single upgrade. This is possible by setting services.nextcloud.package to nextcloud18. @@ -1623,7 +1623,7 @@ CREATE ROLE postgres LOGIN SUPERUSER; - From nextcloud18, it's possible to directly upgrade to + From nextcloud18, it’s possible to directly upgrade to nextcloud19 by setting services.nextcloud.package to nextcloud19. @@ -1685,7 +1685,7 @@ CREATE ROLE postgres LOGIN SUPERUSER; The notmuch package moves its emacs-related binaries and emacs - lisp files to a separate output. They're not part of the + lisp files to a separate output. They’re not part of the default out output anymore - if you relied on the notmuch-emacs-mua binary or the emacs lisp files, access them via the @@ -1736,11 +1736,11 @@ CREATE ROLE postgres LOGIN SUPERUSER; - The cc- and binutils-wrapper's "infix salt" and + The cc- and binutils-wrapper’s infix salt and _BUILD_ and _TARGET_ - user infixes have been replaced with with a "suffix - salt" and suffixes and _FOR_BUILD and - _FOR_TARGET. This matches the autotools + user infixes have been replaced with with a suffix + salt and suffixes and _FOR_BUILD + and _FOR_TARGET. This matches the autotools convention for env vars which standard for these things, making interfacing with other tools easier. @@ -1774,8 +1774,8 @@ CREATE ROLE postgres LOGIN SUPERUSER; network-link-* units, which have been removed. Bringing the interface up has been moved to the beginning of the network-addresses-* unit. - Note this doesn't require systemd-networkd - - it's udev that parses .link files. Extra + Note this doesn’t require systemd-networkd + - it’s udev that parses .link files. Extra care needs to be taken in the presence of legacy udev rules to rename interfaces, as MAC Address and MTU @@ -1825,7 +1825,7 @@ CREATE ROLE postgres LOGIN SUPERUSER; you must include those directories into the BindPaths of the service: - + { systemd.services.transmission.serviceConfig.BindPaths = [ "/path/to/alternative/download-dir" ]; } @@ -1835,7 +1835,7 @@ CREATE ROLE postgres LOGIN SUPERUSER; transmission-daemon is now only available on the local network interface by default. Use: - + { services.transmission.settings.rpc-bind-address = "0.0.0.0"; } @@ -1850,7 +1850,7 @@ CREATE ROLE postgres LOGIN SUPERUSER; With this release systemd-networkd (when enabled through networking.useNetworkd) - has it's netlink socket created through a + has it’s netlink socket created through a systemd.socket unit. This gives us control over socket buffer sizes and other parameters. For larger setups where networkd has to create a lot of (virtual) devices @@ -1873,7 +1873,7 @@ CREATE ROLE postgres LOGIN SUPERUSER; Since the actual memory requirements depend on hardware, - timing, exact configurations etc. it isn't currently possible + timing, exact configurations etc. it isn’t currently possible to infer a good default from within the NixOS module system. Administrators are advised to monitor the logs of systemd-networkd for @@ -1882,7 +1882,7 @@ CREATE ROLE postgres LOGIN SUPERUSER; Note: Increasing the ReceiveBufferSize= - doesn't allocate any memory. It just increases the upper bound + doesn’t allocate any memory. It just increases the upper bound on the kernel side. The memory allocation depends on the amount of messages that are queued on the kernel side of the netlink socket. @@ -1900,7 +1900,7 @@ CREATE ROLE postgres LOGIN SUPERUSER; This means that a configuration like this - + { services.dovecot2.mailboxes = [ { name = "Junk"; @@ -1912,7 +1912,7 @@ CREATE ROLE postgres LOGIN SUPERUSER; should now look like this: - + { services.dovecot2.mailboxes = { Junk.auto = "create"; @@ -1934,8 +1934,8 @@ CREATE ROLE postgres LOGIN SUPERUSER; If you have an existing installation, please make sure that - you're on nextcloud18 before upgrading to nextcloud19 since - Nextcloud doesn't support upgrades across multiple major + you’re on nextcloud18 before upgrading to nextcloud19 since + Nextcloud doesn’t support upgrades across multiple major versions. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2105.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2105.section.xml index fb11b19229..868c170987 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2105.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2105.section.xml @@ -235,9 +235,9 @@ The networking.wireless.iwd module now installs the upstream-provided 80-iwd.link file, which sets - the NamePolicy= for all wlan devices to "keep - kernel", to avoid race conditions between iwd and - networkd. If you don't want this, you can set + the NamePolicy= for all wlan devices to keep + kernel, to avoid race conditions between iwd and + networkd. If you don’t want this, you can set systemd.network.links."80-iwd" = lib.mkForce {}. @@ -245,7 +245,7 @@ rubyMinimal was removed due to being unused and unusable. The default ruby interpreter includes JIT - support, which makes it reference it's compiler. Since JIT + support, which makes it reference it’s compiler. Since JIT support is probably needed by some Gems, it was decided to enable this feature with all cc references by default, and allow to build a Ruby derivation without references to cc, by @@ -330,7 +330,7 @@ mediatomb package. If you want to keep the old behavior, you must declare it with: - + { services.mediatomb.package = pkgs.mediatomb; } @@ -341,7 +341,7 @@ service declaration to add the firewall rules itself before, you should now declare it with: - + { services.mediatomb.openFirewall = true; } @@ -368,7 +368,7 @@ services.uwsgi.capabilities. The previous behaviour can be restored by setting: - + { services.uwsgi.user = "root"; services.uwsgi.group = "root"; @@ -427,7 +427,7 @@ networking.wireguard.interfaces.<name>.generatePrivateKeyFile, which is off by default, had a chmod race - condition fixed. As an aside, the parent directory's + condition fixed. As an aside, the parent directory’s permissions were widened, and the key files were made owner-writable. This only affects newly created keys. However, if the exact permissions are important for your setup, read @@ -527,7 +527,7 @@ $ slapcat -F $TMPDIR -n0 -H 'ldap:///???(!(objectClass=olcSchemaConfig))' this directory are guarded to only run if the files they want to manipulate do not already exist, and so will not re-apply their changes if the IMDS response changes. - Examples: root's SSH key is only added if + Examples: root’s SSH key is only added if /root/.ssh/authorized_keys does not exist, and SSH host keys are only set from user data if they do not exist in /etc/ssh. @@ -550,9 +550,9 @@ $ slapcat -F $TMPDIR -n0 -H 'ldap:///???(!(objectClass=olcSchemaConfig))' configures Privoxy, and the services.tor.client.privoxy.enable option has been removed. To enable Privoxy, and to configure it to - use Tor's faster port, use the following configuration: + use Tor’s faster port, use the following configuration: - + { opt-services.privoxy.enable = true; opt-services.privoxy.enableTor = true; @@ -628,7 +628,7 @@ $ slapcat -F $TMPDIR -n0 -H 'ldap:///???(!(objectClass=olcSchemaConfig))' exporter no longer accepts a fixed command-line parameter to specify the URL of the endpoint serving JSON. It now expects this URL to be passed as an URL parameter, when scraping the - exporter's /probe endpoint. In the + exporter’s /probe endpoint. In the prometheus scrape configuration the scrape target might look like this: @@ -689,7 +689,7 @@ http://some.json-exporter.host:7979/probe?target=https://example.com/some/json/e mpich instead of the default openmpi can now be achived like this: - + self: super: { mpi = super.mpich; @@ -790,7 +790,7 @@ self: super: for any device that the kernel recognises as an hardware RNG, as it will automatically run the krngd task to periodically collect random data from the device and mix it into the - kernel's RNG. + kernel’s RNG. The default SMTP port for GitLab has been changed to @@ -850,7 +850,7 @@ self: super: kodiPackages.inputstream-adaptive and kodiPackages.vfs-sftp addons: - + { environment.systemPackages = [ pkgs.kodi @@ -867,7 +867,7 @@ self: super: and as a result the above configuration should now be written as: - + { environment.systemPackages = [ (pkgs.kodi.withPackages (p: with p; [ @@ -893,7 +893,7 @@ self: super: services.minio.dataDir changed type to a list of paths, required for specifiyng multiple data directories for using with erasure coding. Currently, the - service doesn't enforce nor checks the correct number of paths + service doesn’t enforce nor checks the correct number of paths to correspond to minio requirements. @@ -910,7 +910,7 @@ self: super: dvorak-programmer in console.keyMap now instead of dvp. In - services.xserver.xkbVariant it's still + services.xserver.xkbVariant it’s still dvp. @@ -954,7 +954,7 @@ self: super: supported. - Furthermore, Radicale's systemd unit was hardened which might + Furthermore, Radicale’s systemd unit was hardened which might break some deployments. In particular, a non-default filesystem_folder has to be added to systemd.services.radicale.serviceConfig.ReadWritePaths @@ -991,7 +991,7 @@ self: super: GNURadio - has a pkgs attribute set, and there's a + has a pkgs attribute set, and there’s a gnuradio.callPackage function that extends pkgs with a mkDerivation, and a @@ -1027,7 +1027,7 @@ self: super: Kodi has been - updated to version 19.1 "Matrix". See the + updated to version 19.1 Matrix. See the announcement for further details. @@ -1098,9 +1098,9 @@ self: super: The default-version of nextcloud is - nextcloud21. Please note that it's not + nextcloud21. Please note that it’s not possible to upgrade nextcloud across - multiple major versions! This means that it's e.g. not + multiple major versions! This means that it’s e.g. not possible to upgrade from nextcloud18 to nextcloud20 in a single deploy and most 20.09 users will have to upgrade to nextcloud20 first. @@ -1122,7 +1122,7 @@ self: super: - NixOS now emits a deprecation warning if systemd's + NixOS now emits a deprecation warning if systemd’s StartLimitInterval setting is used in a serviceConfig section instead of in a unitConfig; that setting is deprecated and @@ -1158,7 +1158,7 @@ self: super: users to declare autoscan media directories from their nixos configuration: - + { services.mediatomb.mediaDirectories = [ { path = "/var/lib/mediatomb/pictures"; recursive = false; hidden-files = false; } @@ -1255,8 +1255,8 @@ self: super: The services.dnscrypt-proxy2 module now - takes the upstream's example configuration and updates it with - the user's settings. An option has been added to restore the + takes the upstream’s example configuration and updates it with + the user’s settings. An option has been added to restore the old behaviour if you prefer to declare the configuration from scratch. @@ -1298,13 +1298,14 @@ self: super: The zookeeper package does not provide zooInspector.sh anymore, as that - "contrib" has been dropped from upstream releases. + contrib has been dropped from upstream + releases. In the ACME module, the data used to build the hash for the - account directory has changed to accomodate new features to + account directory has changed to accommodate new features to reduce account rate limit issues. This will trigger new account creation on the first rebuild following this update. No issues are expected to arise from this, thanks to the new @@ -1317,7 +1318,7 @@ self: super: now always ensures home directory permissions to be 0700. Permissions had previously been ignored for already existing home directories, possibly - leaving them readable by others. The option's description was + leaving them readable by others. The option’s description was incorrect regarding ownership management and has been simplified greatly. @@ -1518,7 +1519,7 @@ self: super: been dropped. Users that still want it should add the following to their system configuration: - + { services.gvfs.package = pkgs.gvfs.override { samba = null; }; } diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2111.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2111.section.xml index 9b6e755fd4..48a7179165 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2111.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2111.section.xml @@ -642,7 +642,7 @@ - + { services.paperless-ng.extraConfig = { # Provide languages as ISO 639-2 codes @@ -723,7 +723,7 @@ Superuser created successfully. - The erigon ethereum node has moved it’s + The erigon ethereum node has moved its database location in 2021-08-03, users upgrading must manually move their chaindata (see release @@ -737,7 +737,7 @@ Superuser created successfully. insecure. Out-of-tree modules are likely to require adaptation: instead of - + { users.users.foo = { isSystemUser = true; @@ -747,7 +747,7 @@ Superuser created successfully. also create a group for your user: - + { users.users.foo = { isSystemUser = true; diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2205.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2205.section.xml index 97e993e83f..457bb46137 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2205.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2205.section.xml @@ -328,7 +328,7 @@ Maddy, a free - an open source mail server. Availabe as + an open source mail server. Available as services.maddy. @@ -714,7 +714,7 @@ programs.msmtp.* can be used instead for an equivalent setup. For example: - + { # Original ssmtp configuration: services.ssmtp = { @@ -847,7 +847,7 @@ config.nixpkgs.config.allowUnfree are enabled. If you still want these fonts, use: - + { fonts.fonts = [ pkgs.xorg.fontbhlucidatypewriter100dpi @@ -942,7 +942,7 @@ Before: - + { services.matrix-synapse = { enable = true; @@ -977,7 +977,7 @@ After: - + { services.matrix-synapse = { enable = true; @@ -1143,7 +1143,7 @@ Before: - + services.keycloak = { enable = true; httpPort = "8080"; @@ -1157,7 +1157,7 @@ After: - + services.keycloak = { enable = true; settings = { @@ -1422,7 +1422,7 @@ derivation if name is "vim" (the default). This makes the wrapManual argument obsolete, - but this behavior can be overriden by setting the + but this behavior can be overridden by setting the standalone argument. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2211.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2211.section.xml index b47808dc20..2d7226caa5 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2211.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2211.section.xml @@ -1082,7 +1082,7 @@ services.github-runner.serviceOverrides.SupplementaryGroups = [ removed. This option was an association of environment variables for Grafana. If you had an expression like - + { services.grafana.extraOptions.SECURITY_ADMIN_USER = "foobar"; } @@ -1096,7 +1096,7 @@ services.github-runner.serviceOverrides.SupplementaryGroups = [ For the migration, it is recommended to turn it into the INI format, i.e. to declare - + { services.grafana.settings.security.admin_user = "foobar"; } @@ -1280,9 +1280,9 @@ services.github-runner.serviceOverrides.SupplementaryGroups = [ - Option descriptions, examples, and defaults writting in - DocBook are now deprecated. Using CommonMark is preferred and - will become the default in a future release. + Option descriptions, examples, and defaults writing in DocBook + are now deprecated. Using CommonMark is preferred and will + become the default in a future release. diff --git a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2305.section.xml b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2305.section.xml index aded38b4f7..b1c4745a3f 100644 --- a/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2305.section.xml +++ b/third_party/nixpkgs/nixos/doc/manual/from_md/release-notes/rl-2305.section.xml @@ -23,6 +23,13 @@
New Services + + + Akkoma, an + ActivityPub microblogging server. Available as + services.akkoma. + + blesh, @@ -30,6 +37,15 @@ programs.bash.blesh. + + + cups-pdf-to-pdf, + a pdf-generating cups backend based on + cups-pdf. + Available as + services.printing.cups-pdf. + + fzf, @@ -44,6 +60,14 @@ services.atuin. + + + mmsd, + a lower level daemon that transmits and recieves MMSes. + Available as + services.mmsd. + + v2rayA, a Linux @@ -90,6 +114,26 @@ fetch-ec2-metadata.service + + + minio removed support for its legacy + filesystem backend in + RELEASE.2022-10-29T06-21-33Z. + This means if your storage was created with the old format, + minio will no longer start. Unfortunately minio doesn’t + provide a an automatic migration, they only provide + instructions + how to manually convert the node. To facilitate this + migration we keep around the last version that still supports + the old filesystem backend as + minio_legacy_fs. Use it via + services.minio.package = minio_legacy_fs; + to export your data before switching to the new version. See + the corresponding + issue + for more details. + + services.sourcehut.dispatch and the @@ -106,8 +150,8 @@ services.snapserver.openFirewall module option default value has been changed from true to false. You will - need to explicitely set this option to - true, or configure your firewall. + need to explicitly set this option to true, + or configure your firewall. @@ -116,8 +160,8 @@ services.tmate-ssh-server.openFirewall module option default value has been changed from true to false. You will - need to explicitely set this option to - true, or configure your firewall. + need to explicitly set this option to true, + or configure your firewall. @@ -126,8 +170,18 @@ services.unifi-video.openFirewall module option default value has been changed from true to false. You will - need to explicitely set this option to - true, or configure your firewall. + need to explicitly set this option to true, + or configure your firewall. + + + + + The Nginx module now validates the syntax of config files at + build time. For more complex configurations (using + include with out-of-store files notably) + you may need to disable this check by setting + services.nginx.validateConfig + to false. @@ -201,6 +255,16 @@ services.opensnitch.rules + + + The module usbmuxd now has the ability to + change the package used by the daemon. In case you’re + experiencing issues with usbmuxd you can + try an alternative program like usbmuxd2. + Available as + services.usbmuxd.package + + services.mastodon gained a tootctl wrapped @@ -240,6 +304,57 @@ remote PostgreSQL database. + + + services.peertube now requires you to + specify the secret file + secrets.secretsFile. It can be generated by + running openssl rand -hex 32. Before + upgrading, read the release notes for PeerTube: + + + + + Release + v5.0.0 + + + + + And backup your data. + + + + + The module services.headscale was + refactored to be compliant with + RFC + 0042. To be precise, this means that the following + things have changed: + + + + + Most settings has been migrated under + services.headscale.settings + which is an attribute-set that will be converted into + headscale’s YAML config format. This means that the + configuration from + headscale’s + example configuration can be directly written as + attribute-set in Nix within this option. + + + + + + + nixos/lib/make-disk-image.nix can now + mutate EFI variables, run user-provided EFI firmware or + variable templates. This is now extensively documented in the + NixOS manual. + + A new virtualisation.rosetta module was @@ -260,6 +375,14 @@ dynamically. + + + Enabling global redirect in + services.nginx.virtualHosts now allows one + to add exceptions with the locations + option. + + Resilio sync secret keys can now be provided using a secrets @@ -267,6 +390,13 @@ the Nix store. + + + The firewall and nat + module now has a nftables based implementation. Enable + networking.nftables to use it. + + The services.fwupd module now allows @@ -282,6 +412,27 @@ to match upstream. + + + The new option + services.tailscale.useRoutingFeatures + controls various settings for using Tailscale features like + exit nodes and subnet routers. If you wish to use your machine + as an exit node, you can set this setting to + server, otherwise if you wish to use an + exit node you can set this setting to + client. The strict RPF warning has been + removed as the RPF will be loosened automatically based on the + value of this setting. + + + + + Xastir + can now access AX.25 interfaces via the + libax25 package. + +
diff --git a/third_party/nixpkgs/nixos/doc/manual/installation/building-nixos.chapter.md b/third_party/nixpkgs/nixos/doc/manual/installation/building-nixos.chapter.md index 17da261fbd..7b0b5ea1c4 100644 --- a/third_party/nixpkgs/nixos/doc/manual/installation/building-nixos.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/installation/building-nixos.chapter.md @@ -9,7 +9,7 @@ You have two options: - Combine them with (any of) your host config(s) System images, such as the live installer ones, know how to enforce configuration settings -on wich they immediately depend in order to work correctly. +on which they immediately depend in order to work correctly. However, if you are confident, you can opt to override those enforced values with `mkForce`. @@ -75,6 +75,6 @@ configuration values upon which the correct functioning of the image depends. For example, the iso base image overrides those file systems which it needs at a minimum for correct functioning, while the installer base image overrides the entire file system layout because there can't be any other guarantees on a live medium than those given -by the live medium itself. The latter is especially true befor formatting the target +by the live medium itself. The latter is especially true before formatting the target block device(s). On the other hand, the netboot iso only overrides its minimum dependencies since netboot images are always made-to-target. diff --git a/third_party/nixpkgs/nixos/doc/manual/installation/changing-config.chapter.md b/third_party/nixpkgs/nixos/doc/manual/installation/changing-config.chapter.md index 8a404f085d..11b49ccb1f 100644 --- a/third_party/nixpkgs/nixos/doc/manual/installation/changing-config.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/installation/changing-config.chapter.md @@ -13,7 +13,7 @@ booting, and try to realise the configuration in the running system (e.g., by restarting system services). ::: {.warning} -This command doesn\'t start/stop [user services](#opt-systemd.user.services) +This command doesn't start/stop [user services](#opt-systemd.user.services) automatically. `nixos-rebuild` only runs a `daemon-reload` for each user with running user services. ::: @@ -51,7 +51,7 @@ GRUB 2 boot screen by giving it a different *profile name*, e.g. ``` which causes the new configuration (and previous ones created using -`-p test`) to show up in the GRUB submenu "NixOS - Profile \'test\'". +`-p test`) to show up in the GRUB submenu "NixOS - Profile 'test'". This can be useful to separate test configurations from "stable" configurations. diff --git a/third_party/nixpkgs/nixos/doc/manual/installation/installing-from-other-distro.section.md b/third_party/nixpkgs/nixos/doc/manual/installation/installing-from-other-distro.section.md index b9ccf14151..921592fe53 100644 --- a/third_party/nixpkgs/nixos/doc/manual/installation/installing-from-other-distro.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/installation/installing-from-other-distro.section.md @@ -30,7 +30,7 @@ The first steps to all these are the same: 1. Switch to the NixOS channel: - If you\'ve just installed Nix on a non-NixOS distribution, you will + If you've just installed Nix on a non-NixOS distribution, you will be on the `nixpkgs` channel by default. ```ShellSession @@ -49,10 +49,10 @@ The first steps to all these are the same: 1. Install the NixOS installation tools: - You\'ll need `nixos-generate-config` and `nixos-install`, but this + You'll need `nixos-generate-config` and `nixos-install`, but this also makes some man pages and `nixos-enter` available, just in case you want to chroot into your NixOS partition. NixOS installs these - by default, but you don\'t have NixOS yet.. + by default, but you don't have NixOS yet.. ```ShellSession $ nix-env -f '' -iA nixos-install-tools @@ -70,7 +70,7 @@ The first steps to all these are the same: refer to the partitioning, file-system creation, and mounting steps of [](#sec-installation) - If you\'re about to install NixOS in place using `NIXOS_LUSTRATE` + If you're about to install NixOS in place using `NIXOS_LUSTRATE` there is nothing to do for this step. 1. Generate your NixOS configuration: @@ -79,12 +79,12 @@ The first steps to all these are the same: $ sudo `which nixos-generate-config` --root /mnt ``` - You\'ll probably want to edit the configuration files. Refer to the + You'll probably want to edit the configuration files. Refer to the `nixos-generate-config` step in [](#sec-installation) for more information. Consider setting up the NixOS bootloader to give you the ability to - boot on your existing Linux partition. For instance, if you\'re + boot on your existing Linux partition. For instance, if you're using GRUB and your existing distribution is running Ubuntu, you may want to add something like this to your `configuration.nix`: @@ -152,15 +152,15 @@ The first steps to all these are the same: ``` Note that this will place the generated configuration files in - `/etc/nixos`. You\'ll probably want to edit the configuration files. + `/etc/nixos`. You'll probably want to edit the configuration files. Refer to the `nixos-generate-config` step in [](#sec-installation) for more information. - You\'ll likely want to set a root password for your first boot using - the configuration files because you won\'t have a chance to enter a - password until after you reboot. You can initalize the root password - to an empty one with this line: (and of course don\'t forget to set - one once you\'ve rebooted or to lock the account with + You'll likely want to set a root password for your first boot using + the configuration files because you won't have a chance to enter a + password until after you reboot. You can initialize the root password + to an empty one with this line: (and of course don't forget to set + one once you've rebooted or to lock the account with `sudo passwd -l root` if you use `sudo`) ```nix @@ -186,7 +186,7 @@ The first steps to all these are the same: bootup scripts require its presence). `/etc/NIXOS_LUSTRATE` tells the NixOS bootup scripts to move - *everything* that\'s in the root partition to `/old-root`. This will + *everything* that's in the root partition to `/old-root`. This will move your existing distribution out of the way in the very early stages of the NixOS bootup. There are exceptions (we do need to keep NixOS there after all), so the NixOS lustrate process will not @@ -201,10 +201,10 @@ The first steps to all these are the same: ::: {.note} Support for `NIXOS_LUSTRATE` was added in NixOS 16.09. The act of - \"lustrating\" refers to the wiping of the existing distribution. + "lustrating" refers to the wiping of the existing distribution. Creating `/etc/NIXOS_LUSTRATE` can also be used on NixOS to remove - all mutable files from your root partition (anything that\'s not in - `/nix` or `/boot` gets \"lustrated\" on the next boot. + all mutable files from your root partition (anything that's not in + `/nix` or `/boot` gets "lustrated" on the next boot. lustrate /ˈlʌstreɪt/ verb. @@ -212,14 +212,14 @@ The first steps to all these are the same: ritual action. ::: - Let\'s create the files: + Let's create the files: ```ShellSession $ sudo touch /etc/NIXOS $ sudo touch /etc/NIXOS_LUSTRATE ``` - Let\'s also make sure the NixOS configuration files are kept once we + Let's also make sure the NixOS configuration files are kept once we reboot on NixOS: ```ShellSession @@ -233,7 +233,7 @@ The first steps to all these are the same: ::: {.warning} Once you complete this step, your current distribution will no - longer be bootable! If you didn\'t get all the NixOS configuration + longer be bootable! If you didn't get all the NixOS configuration right, especially those settings pertaining to boot loading and root partition, NixOS may not be bootable either. Have a USB rescue device ready in case this happens. @@ -247,7 +247,7 @@ The first steps to all these are the same: Cross your fingers, reboot, hopefully you should get a NixOS prompt! 1. If for some reason you want to revert to the old distribution, - you\'ll need to boot on a USB rescue disk and do something along + you'll need to boot on a USB rescue disk and do something along these lines: ```ShellSession @@ -264,14 +264,14 @@ The first steps to all these are the same: This may work as is or you might also need to reinstall the boot loader. - And of course, if you\'re happy with NixOS and no longer need the + And of course, if you're happy with NixOS and no longer need the old distribution: ```ShellSession sudo rm -rf /old-root ``` -1. It\'s also worth noting that this whole process can be automated. +1. It's also worth noting that this whole process can be automated. This is especially useful for Cloud VMs, where provider do not provide NixOS. For instance, [nixos-infect](https://github.com/elitak/nixos-infect) uses the diff --git a/third_party/nixpkgs/nixos/doc/manual/installation/installing-kexec.section.md b/third_party/nixpkgs/nixos/doc/manual/installation/installing-kexec.section.md index 286cbbda6a..61d8e8e599 100644 --- a/third_party/nixpkgs/nixos/doc/manual/installation/installing-kexec.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/installation/installing-kexec.section.md @@ -30,7 +30,7 @@ This will create a `result` directory containing the following: These three files are meant to be copied over to the other already running Linux Distribution. -Note it's symlinks pointing elsewhere, so `cd` in, and use +Note its symlinks pointing elsewhere, so `cd` in, and use `scp * root@$destination` to copy it over, rather than rsync. Once you finished copying, execute `kexec-boot` *on the destination*, and after diff --git a/third_party/nixpkgs/nixos/doc/manual/installation/installing-usb.section.md b/third_party/nixpkgs/nixos/doc/manual/installation/installing-usb.section.md index da32935a7a..adfe22ea2f 100644 --- a/third_party/nixpkgs/nixos/doc/manual/installation/installing-usb.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/installation/installing-usb.section.md @@ -56,12 +56,12 @@ select the image, select the USB flash drive and click "Write". sudo dd if= of=/dev/rdiskX bs=4m ``` - After `dd` completes, a GUI dialog \"The disk - you inserted was not readable by this computer\" will pop up, which can + After `dd` completes, a GUI dialog "The disk + you inserted was not readable by this computer" will pop up, which can be ignored. ::: {.note} - Using the \'raw\' `rdiskX` device instead of `diskX` with dd completes in + Using the 'raw' `rdiskX` device instead of `diskX` with dd completes in minutes instead of hours. ::: diff --git a/third_party/nixpkgs/nixos/doc/manual/installation/installing-virtualbox-guest.section.md b/third_party/nixpkgs/nixos/doc/manual/installation/installing-virtualbox-guest.section.md index e9c2a621c1..004838e586 100644 --- a/third_party/nixpkgs/nixos/doc/manual/installation/installing-virtualbox-guest.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/installation/installing-virtualbox-guest.section.md @@ -1,4 +1,4 @@ -# Installing in a VirtualBox guest {#sec-instaling-virtualbox-guest} +# Installing in a VirtualBox guest {#sec-installing-virtualbox-guest} Installing NixOS into a VirtualBox guest is convenient for users who want to try NixOS without installing it on bare metal. If you want to @@ -6,7 +6,7 @@ use a pre-made VirtualBox appliance, it is available at [the downloads page](https://nixos.org/nixos/download.html). If you want to set up a VirtualBox guest manually, follow these instructions: -1. Add a New Machine in VirtualBox with OS Type \"Linux / Other Linux\" +1. Add a New Machine in VirtualBox with OS Type "Linux / Other Linux" 1. Base Memory Size: 768 MB or higher. @@ -16,7 +16,7 @@ VirtualBox guest manually, follow these instructions: 1. Click on Settings / System / Processor and enable PAE/NX -1. Click on Settings / System / Acceleration and enable \"VT-x/AMD-V\" +1. Click on Settings / System / Acceleration and enable "VT-x/AMD-V" acceleration 1. Click on Settings / Display / Screen and select VMSVGA as Graphics @@ -41,7 +41,7 @@ boot.initrd.checkJournalingFS = false; Shared folders can be given a name and a path in the host system in the VirtualBox settings (Machine / Settings / Shared Folders, then click on -the \"Add\" icon). Add the following to the +the "Add" icon). Add the following to the `/etc/nixos/configuration.nix` to auto-mount them. If you do not add `"nofail"`, the system will not boot properly. diff --git a/third_party/nixpkgs/nixos/doc/manual/installation/installing.chapter.md b/third_party/nixpkgs/nixos/doc/manual/installation/installing.chapter.md index 2c86cb923a..ac7cf5a7bf 100644 --- a/third_party/nixpkgs/nixos/doc/manual/installation/installing.chapter.md +++ b/third_party/nixpkgs/nixos/doc/manual/installation/installing.chapter.md @@ -162,7 +162,7 @@ network manually, disable NetworkManager with `systemctl stop NetworkManager`. On the minimal installer, NetworkManager is not available, so -configuration must be perfomed manually. To configure the wifi, first +configuration must be performed manually. To configure the wifi, first start wpa_supplicant with `sudo systemctl start wpa_supplicant`, then run `wpa_cli`. For most home networks, you need to type in the following commands: @@ -230,11 +230,11 @@ The recommended partition scheme differs depending if the computer uses #### UEFI (GPT) {#sec-installation-manual-partitioning-UEFI} []{#sec-installation-partitioning-UEFI} -Here\'s an example partition scheme for UEFI, using `/dev/sda` as the +Here's an example partition scheme for UEFI, using `/dev/sda` as the device. ::: {.note} -You can safely ignore `parted`\'s informational message about needing to +You can safely ignore `parted`'s informational message about needing to update /etc/fstab. ::: @@ -279,11 +279,11 @@ Once complete, you can follow with #### Legacy Boot (MBR) {#sec-installation-manual-partitioning-MBR} []{#sec-installation-partitioning-MBR} -Here\'s an example partition scheme for Legacy Boot, using `/dev/sda` as +Here's an example partition scheme for Legacy Boot, using `/dev/sda` as the device. ::: {.note} -You can safely ignore `parted`\'s informational message about needing to +You can safely ignore `parted`'s informational message about needing to update /etc/fstab. ::: diff --git a/third_party/nixpkgs/nixos/doc/manual/man-nixos-rebuild.xml b/third_party/nixpkgs/nixos/doc/manual/man-nixos-rebuild.xml index ea96f49fa9..cab871661a 100644 --- a/third_party/nixpkgs/nixos/doc/manual/man-nixos-rebuild.xml +++ b/third_party/nixpkgs/nixos/doc/manual/man-nixos-rebuild.xml @@ -134,7 +134,7 @@ - path + NIX_PATH @@ -624,7 +624,7 @@ In addition, nixos-rebuild accepts various Nix-related - flags, including / , + flags, including / , , , , , , and / . See the Nix manual for details. @@ -647,6 +647,20 @@ + + + NIX_PATH + + + + A colon-separated list of directories used to look up Nix expressions enclosed in angle brackets (e.g <nixpkgs>). Example + + nixpkgs=./my-nixpkgs + + + + + NIX_SSHOPTS diff --git a/third_party/nixpkgs/nixos/doc/manual/md-to-db.sh b/third_party/nixpkgs/nixos/doc/manual/md-to-db.sh index beb0ff9f70..6eca9f3b2c 100755 --- a/third_party/nixpkgs/nixos/doc/manual/md-to-db.sh +++ b/third_party/nixpkgs/nixos/doc/manual/md-to-db.sh @@ -1,5 +1,5 @@ #! /usr/bin/env nix-shell -#! nix-shell -I nixpkgs=https://github.com/NixOS/nixpkgs/tarball/21.11 -i bash -p pandoc +#! nix-shell -I nixpkgs=https://github.com/NixOS/nixpkgs/tarball/22.11 -i bash -p pandoc # This script is temporarily needed while we transition the manual to # CommonMark. It converts the .md files in the regular manual folder diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1509.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1509.section.md index 55804ddb98..1422ae4c29 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1509.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1509.section.md @@ -2,7 +2,7 @@ In addition to numerous new and upgraded packages, this release has the following highlights: -- The [Haskell](http://haskell.org/) packages infrastructure has been re-designed from the ground up (\"Haskell NG\"). NixOS now distributes the latest version of every single package registered on [Hackage](http://hackage.haskell.org/) \-- well in excess of 8,000 Haskell packages. Detailed instructions on how to use that infrastructure can be found in the [User\'s Guide to the Haskell Infrastructure](https://nixos.org/nixpkgs/manual/#users-guide-to-the-haskell-infrastructure). Users migrating from an earlier release may find helpful information below, in the list of backwards-incompatible changes. Furthermore, we distribute 51(!) additional Haskell package sets that provide every single [LTS Haskell](http://www.stackage.org/) release since version 0.0 as well as the most recent [Stackage Nightly](http://www.stackage.org/) snapshot. The announcement [\"Full Stackage Support in Nixpkgs\"](https://nixos.org/nix-dev/2015-September/018138.html) gives additional details. +- The [Haskell](http://haskell.org/) packages infrastructure has been re-designed from the ground up ("Haskell NG"). NixOS now distributes the latest version of every single package registered on [Hackage](http://hackage.haskell.org/) \-- well in excess of 8,000 Haskell packages. Detailed instructions on how to use that infrastructure can be found in the [User's Guide to the Haskell Infrastructure](https://nixos.org/nixpkgs/manual/#users-guide-to-the-haskell-infrastructure). Users migrating from an earlier release may find helpful information below, in the list of backwards-incompatible changes. Furthermore, we distribute 51(!) additional Haskell package sets that provide every single [LTS Haskell](http://www.stackage.org/) release since version 0.0 as well as the most recent [Stackage Nightly](http://www.stackage.org/) snapshot. The announcement ["Full Stackage Support in Nixpkgs"](https://nixos.org/nix-dev/2015-September/018138.html) gives additional details. - Nix has been updated to version 1.10, which among other improvements enables cryptographic signatures on binary caches for improved security. @@ -178,7 +178,7 @@ The new option `system.stateVersion` ensures that certain configuration changes - Nix now requires binary caches to be cryptographically signed. If you have unsigned binary caches that you want to continue to use, you should set `nix.requireSignedBinaryCaches = false`. -- Steam now doesn\'t need root rights to work. Instead of using `*-steam-chrootenv`, you should now just run `steam`. `steamChrootEnv` package was renamed to `steam`, and old `steam` package \-- to `steamOriginal`. +- Steam now doesn't need root rights to work. Instead of using `*-steam-chrootenv`, you should now just run `steam`. `steamChrootEnv` package was renamed to `steam`, and old `steam` package \-- to `steamOriginal`. - CMPlayer has been renamed to bomi upstream. Package `cmplayer` was accordingly renamed to `bomi` @@ -203,7 +203,7 @@ The new option `system.stateVersion` ensures that certain configuration changes } ``` -- \"`nix-env -qa`\" no longer discovers Haskell packages by name. The only packages visible in the global scope are `ghc`, `cabal-install`, and `stack`, but all other packages are hidden. The reason for this inconvenience is the sheer size of the Haskell package set. Name-based lookups are expensive, and most `nix-env -qa` operations would become much slower if we\'d add the entire Hackage database into the top level attribute set. Instead, the list of Haskell packages can be displayed by running: +- "`nix-env -qa`" no longer discovers Haskell packages by name. The only packages visible in the global scope are `ghc`, `cabal-install`, and `stack`, but all other packages are hidden. The reason for this inconvenience is the sheer size of the Haskell package set. Name-based lookups are expensive, and most `nix-env -qa` operations would become much slower if we'd add the entire Hackage database into the top level attribute set. Instead, the list of Haskell packages can be displayed by running: ```ShellSession nix-env -f "" -qaP -A haskellPackages @@ -217,11 +217,11 @@ nix-env -f "" -iA haskellPackages.pandoc Installing Haskell _libraries_ this way, however, is no longer supported. See the next item for more details. -- Previous versions of NixOS came with a feature called `ghc-wrapper`, a small script that allowed GHC to transparently pick up on libraries installed in the user\'s profile. This feature has been deprecated; `ghc-wrapper` was removed from the distribution. The proper way to register Haskell libraries with the compiler now is the `haskellPackages.ghcWithPackages` function. The [User\'s Guide to the Haskell Infrastructure](https://nixos.org/nixpkgs/manual/#users-guide-to-the-haskell-infrastructure) provides more information about this subject. +- Previous versions of NixOS came with a feature called `ghc-wrapper`, a small script that allowed GHC to transparently pick up on libraries installed in the user's profile. This feature has been deprecated; `ghc-wrapper` was removed from the distribution. The proper way to register Haskell libraries with the compiler now is the `haskellPackages.ghcWithPackages` function. The [User's Guide to the Haskell Infrastructure](https://nixos.org/nixpkgs/manual/#users-guide-to-the-haskell-infrastructure) provides more information about this subject. - All Haskell builds that have been generated with version 1.x of the `cabal2nix` utility are now invalid and need to be re-generated with a current version of `cabal2nix` to function. The most recent version of this tool can be installed by running `nix-env -i cabal2nix`. -- The `haskellPackages` set in Nixpkgs used to have a function attribute called `extension` that users could override in their `~/.nixpkgs/config.nix` files to configure additional attributes, etc. That function still exists, but it\'s now called `overrides`. +- The `haskellPackages` set in Nixpkgs used to have a function attribute called `extension` that users could override in their `~/.nixpkgs/config.nix` files to configure additional attributes, etc. That function still exists, but it's now called `overrides`. - The OpenBLAS library has been updated to version `0.2.14`. Support for the `x86_64-darwin` platform was added. Dynamic architecture detection was enabled; OpenBLAS now selects microarchitecture-optimized routines at runtime, so optimal performance is achieved without the need to rebuild OpenBLAS locally. OpenBLAS has replaced ATLAS in most packages which use an optimized BLAS or LAPACK implementation. @@ -312,7 +312,7 @@ Other notable improvements: - The nixos and nixpkgs channels were unified, so one _can_ use `nix-env -iA nixos.bash` instead of `nix-env -iA nixos.pkgs.bash`. See [the commit](https://github.com/NixOS/nixpkgs/commit/2cd7c1f198) for details. -- Users running an SSH server who worry about the quality of their `/etc/ssh/moduli` file with respect to the [vulnerabilities discovered in the Diffie-Hellman key exchange](https://stribika.github.io/2015/01/04/secure-secure-shell.html) can now replace OpenSSH\'s default version with one they generated themselves using the new `services.openssh.moduliFile` option. +- Users running an SSH server who worry about the quality of their `/etc/ssh/moduli` file with respect to the [vulnerabilities discovered in the Diffie-Hellman key exchange](https://stribika.github.io/2015/01/04/secure-secure-shell.html) can now replace OpenSSH's default version with one they generated themselves using the new `services.openssh.moduliFile` option. - A newly packaged TeX Live 2015 is provided in `pkgs.texlive`, split into 6500 nix packages. For basic user documentation see [the source](https://github.com/NixOS/nixpkgs/blob/release-15.09/pkgs/tools/typesetting/tex/texlive/default.nix#L1). Beware of [an issue](https://github.com/NixOS/nixpkgs/issues/9757) when installing a too large package set. The plan is to deprecate and maybe delete the original TeX packages until the next release. diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1603.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1603.section.md index dce879ec16..532a16f937 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1603.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1603.section.md @@ -152,19 +152,19 @@ When upgrading from a previous release, please be aware of the following incompa } ``` -- `s3sync` is removed, as it hasn\'t been developed by upstream for 4 years and only runs with ruby 1.8. For an actively-developer alternative look at `tarsnap` and others. +- `s3sync` is removed, as it hasn't been developed by upstream for 4 years and only runs with ruby 1.8. For an actively-developer alternative look at `tarsnap` and others. -- `ruby_1_8` has been removed as it\'s not supported from upstream anymore and probably contains security issues. +- `ruby_1_8` has been removed as it's not supported from upstream anymore and probably contains security issues. - `tidy-html5` package is removed. Upstream only provided `(lib)tidy5` during development, and now they went back to `(lib)tidy` to work as a drop-in replacement of the original package that has been unmaintained for years. You can (still) use the `html-tidy` package, which got updated to a stable release from this new upstream. - `extraDeviceOptions` argument is removed from `bumblebee` package. Instead there are now two separate arguments: `extraNvidiaDeviceOptions` and `extraNouveauDeviceOptions` for setting extra X11 options for nvidia and nouveau drivers, respectively. -- The `Ctrl+Alt+Backspace` key combination no longer kills the X server by default. There\'s a new option `services.xserver.enableCtrlAltBackspace` allowing to enable the combination again. +- The `Ctrl+Alt+Backspace` key combination no longer kills the X server by default. There's a new option `services.xserver.enableCtrlAltBackspace` allowing to enable the combination again. - `emacsPackagesNg` now contains all packages from the ELPA, MELPA, and MELPA Stable repositories. -- Data directory for Postfix MTA server is moved from `/var/postfix` to `/var/lib/postfix`. Old configurations are migrated automatically. `service.postfix` module has also received many improvements, such as correct directories\' access rights, new `aliasFiles` and `mapFiles` options and more. +- Data directory for Postfix MTA server is moved from `/var/postfix` to `/var/lib/postfix`. Old configurations are migrated automatically. `service.postfix` module has also received many improvements, such as correct directories' access rights, new `aliasFiles` and `mapFiles` options and more. - Filesystem options should now be configured as a list of strings, not a comma-separated string. The old style will continue to work, but print a warning, until the 16.09 release. An example of the new style: @@ -180,7 +180,7 @@ When upgrading from a previous release, please be aware of the following incompa - CUPS, installed by `services.printing` module, now has its data directory in `/var/lib/cups`. Old configurations from `/etc/cups` are moved there automatically, but there might be problems. Also configuration options `services.printing.cupsdConf` and `services.printing.cupsdFilesConf` were removed because they had been allowing one to override configuration variables required for CUPS to work at all on NixOS. For most use cases, `services.printing.extraConf` and new option `services.printing.extraFilesConf` should be enough; if you encounter a situation when they are not, please file a bug. - There are also Gutenprint improvements; in particular, a new option `services.printing.gutenprint` is added to enable automatic updating of Gutenprint PPMs; it\'s greatly recommended to enable it instead of adding `gutenprint` to the `drivers` list. + There are also Gutenprint improvements; in particular, a new option `services.printing.gutenprint` is added to enable automatic updating of Gutenprint PPMs; it's greatly recommended to enable it instead of adding `gutenprint` to the `drivers` list. - `services.xserver.vaapiDrivers` has been removed. Use `hardware.opengl.extraPackages{,32}` instead. You can also specify VDPAU drivers there. @@ -202,7 +202,7 @@ When upgrading from a previous release, please be aware of the following incompa } ``` -- `services.udev.extraRules` option now writes rules to `99-local.rules` instead of `10-local.rules`. This makes all the user rules apply after others, so their results wouldn\'t be overriden by anything else. +- `services.udev.extraRules` option now writes rules to `99-local.rules` instead of `10-local.rules`. This makes all the user rules apply after others, so their results wouldn't be overridden by anything else. - Large parts of the `services.gitlab` module has been been rewritten. There are new configuration options available. The `stateDir` option was renamned to `statePath` and the `satellitesDir` option was removed. Please review the currently available options. @@ -246,7 +246,7 @@ When upgrading from a previous release, please be aware of the following incompa you should either re-run `nixos-generate-config` or manually replace `"${config.boot.kernelPackages.broadcom_sta}"` by `config.boot.kernelPackages.broadcom_sta` in your `/etc/nixos/hardware-configuration.nix`. More discussion is on [ the github issue](https://github.com/NixOS/nixpkgs/pull/12595). -- The `services.xserver.startGnuPGAgent` option has been removed. GnuPG 2.1.x changed the way the gpg-agent works, and that new approach no longer requires (or even supports) the \"start everything as a child of the agent\" scheme we\'ve implemented in NixOS for older versions. To configure the gpg-agent for your X session, add the following code to `~/.bashrc` or some file that's sourced when your shell is started: +- The `services.xserver.startGnuPGAgent` option has been removed. GnuPG 2.1.x changed the way the gpg-agent works, and that new approach no longer requires (or even supports) the "start everything as a child of the agent" scheme we've implemented in NixOS for older versions. To configure the gpg-agent for your X session, add the following code to `~/.bashrc` or some file that's sourced when your shell is started: ```shell GPG_TTY=$(tty) @@ -273,7 +273,7 @@ When upgrading from a previous release, please be aware of the following incompa gpg --import ~/.gnupg/secring.gpg ``` - The `gpg-agent(1)` man page has more details about this subject, i.e. in the \"EXAMPLES\" section. + The `gpg-agent(1)` man page has more details about this subject, i.e. in the "EXAMPLES" section. Other notable improvements: diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1609.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1609.section.md index 075f0cf52c..e9c650cf40 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1609.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1609.section.md @@ -20,7 +20,7 @@ When upgrading from a previous release, please be aware of the following incompa - A large number of packages have been converted to use the multiple outputs feature of Nix to greatly reduce the amount of required disk space, as mentioned above. This may require changes to any custom packages to make them build again; see the relevant chapter in the Nixpkgs manual for more information. (Additional caveat to packagers: some packaging conventions related to multiple-output packages [were changed](https://github.com/NixOS/nixpkgs/pull/14766) late (August 2016) in the release cycle and differ from the initial introduction of multiple outputs.) -- Previous versions of Nixpkgs had support for all versions of the LTS Haskell package set. That support has been dropped. The previously provided `haskell.packages.lts-x_y` package sets still exist in name to aviod breaking user code, but these package sets don\'t actually contain the versions mandated by the corresponding LTS release. Instead, our package set it loosely based on the latest available LTS release, i.e. LTS 7.x at the time of this writing. New releases of NixOS and Nixpkgs will drop those old names entirely. [The motivation for this change](https://nixos.org/nix-dev/2016-June/020585.html) has been discussed at length on the `nix-dev` mailing list and in [Github issue \#14897](https://github.com/NixOS/nixpkgs/issues/14897). Development strategies for Haskell hackers who want to rely on Nix and NixOS have been described in [another nix-dev article](https://nixos.org/nix-dev/2016-June/020642.html). +- Previous versions of Nixpkgs had support for all versions of the LTS Haskell package set. That support has been dropped. The previously provided `haskell.packages.lts-x_y` package sets still exist in name to aviod breaking user code, but these package sets don't actually contain the versions mandated by the corresponding LTS release. Instead, our package set it loosely based on the latest available LTS release, i.e. LTS 7.x at the time of this writing. New releases of NixOS and Nixpkgs will drop those old names entirely. [The motivation for this change](https://nixos.org/nix-dev/2016-June/020585.html) has been discussed at length on the `nix-dev` mailing list and in [Github issue \#14897](https://github.com/NixOS/nixpkgs/issues/14897). Development strategies for Haskell hackers who want to rely on Nix and NixOS have been described in [another nix-dev article](https://nixos.org/nix-dev/2016-June/020642.html). - Shell aliases for systemd sub-commands [were dropped](https://github.com/NixOS/nixpkgs/pull/15598): `start`, `stop`, `restart`, `status`. @@ -28,7 +28,7 @@ When upgrading from a previous release, please be aware of the following incompa - `/var/empty` is now immutable. Activation script runs `chattr +i` to forbid any modifications inside the folder. See [ the pull request](https://github.com/NixOS/nixpkgs/pull/18365) for what bugs this caused. -- Gitlab\'s maintainance script `gitlab-runner` was removed and split up into the more clearer `gitlab-run` and `gitlab-rake` scripts, because `gitlab-runner` is a component of Gitlab CI. +- Gitlab's maintainance script `gitlab-runner` was removed and split up into the more clearer `gitlab-run` and `gitlab-rake` scripts, because `gitlab-runner` is a component of Gitlab CI. - `services.xserver.libinput.accelProfile` default changed from `flat` to `adaptive`, as per [ official documentation](https://wayland.freedesktop.org/libinput/doc/latest/group__config.html#gad63796972347f318b180e322e35cee79). @@ -38,7 +38,7 @@ When upgrading from a previous release, please be aware of the following incompa - `pkgs.linuxPackages.virtualbox` now contains only the kernel modules instead of the VirtualBox user space binaries. If you want to reference the user space binaries, you have to use the new `pkgs.virtualbox` instead. -- `goPackages` was replaced with separated Go applications in appropriate `nixpkgs` categories. Each Go package uses its own dependency set. There\'s also a new `go2nix` tool introduced to generate a Go package definition from its Go source automatically. +- `goPackages` was replaced with separated Go applications in appropriate `nixpkgs` categories. Each Go package uses its own dependency set. There's also a new `go2nix` tool introduced to generate a Go package definition from its Go source automatically. - `services.mongodb.extraConfig` configuration format was changed to YAML. diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1703.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1703.section.md index 7f424f2a6c..b82c41e28c 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1703.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1703.section.md @@ -8,7 +8,7 @@ In addition to numerous new and upgraded packages, this release has the followin - This release is based on Glibc 2.25, GCC 5.4.0 and systemd 232. The default Linux kernel is 4.9 and Nix is at 1.11.8. -- The default desktop environment now is KDE\'s Plasma 5. KDE 4 has been removed +- The default desktop environment now is KDE's Plasma 5. KDE 4 has been removed - The setuid wrapper functionality now supports setting capabilities. @@ -208,7 +208,7 @@ When upgrading from a previous release, please be aware of the following incompa - Two lone top-level dict dbs moved into `dictdDBs`. This affects: `dictdWordnet` which is now at `dictdDBs.wordnet` and `dictdWiktionary` which is now at `dictdDBs.wiktionary` -- Parsoid service now uses YAML configuration format. `service.parsoid.interwikis` is now called `service.parsoid.wikis` and is a list of either API URLs or attribute sets as specified in parsoid\'s documentation. +- Parsoid service now uses YAML configuration format. `service.parsoid.interwikis` is now called `service.parsoid.wikis` and is a list of either API URLs or attribute sets as specified in parsoid's documentation. - `Ntpd` was replaced by `systemd-timesyncd` as the default service to synchronize system time with a remote NTP server. The old behavior can be restored by setting `services.ntp.enable` to `true`. Upstream time servers for all NTP implementations are now configured using `networking.timeServers`. @@ -260,11 +260,11 @@ When upgrading from a previous release, please be aware of the following incompa - Autoloading connection tracking helpers is now disabled by default. This default was also changed in the Linux kernel and is considered insecure if not configured properly in your firewall. If you need connection tracking helpers (i.e. for active FTP) please enable `networking.firewall.autoLoadConntrackHelpers` and tune `networking.firewall.connectionTrackingModules` to suit your needs. -- `local_recipient_maps` is not set to empty value by Postfix service. It\'s an insecure default as stated by Postfix documentation. Those who want to retain this setting need to set it via `services.postfix.extraConfig`. +- `local_recipient_maps` is not set to empty value by Postfix service. It's an insecure default as stated by Postfix documentation. Those who want to retain this setting need to set it via `services.postfix.extraConfig`. - Iputils no longer provide ping6 and traceroute6. The functionality of these tools has been integrated into ping and traceroute respectively. To enforce an address family the new flags `-4` and `-6` have been added. One notable incompatibility is that specifying an interface (for link-local IPv6 for instance) is no longer done with the `-I` flag, but by encoding the interface into the address (`ping fe80::1%eth0`). -- The socket handling of the `services.rmilter` module has been fixed and refactored. As rmilter doesn\'t support binding to more than one socket, the options `bindUnixSockets` and `bindInetSockets` have been replaced by `services.rmilter.bindSocket.*`. The default is still a unix socket in `/run/rmilter/rmilter.sock`. Refer to the options documentation for more information. +- The socket handling of the `services.rmilter` module has been fixed and refactored. As rmilter doesn't support binding to more than one socket, the options `bindUnixSockets` and `bindInetSockets` have been replaced by `services.rmilter.bindSocket.*`. The default is still a unix socket in `/run/rmilter/rmilter.sock`. Refer to the options documentation for more information. - The `fetch*` functions no longer support md5, please use sha256 instead. @@ -278,7 +278,7 @@ When upgrading from a previous release, please be aware of the following incompa - Module type system have a new extensible option types feature that allow to extend certain types, such as enum, through multiple option declarations of the same option across multiple modules. -- `jre` now defaults to GTK UI by default. This improves visual consistency and makes Java follow system font style, improving the situation on HighDPI displays. This has a cost of increased closure size; for server and other headless workloads it\'s recommended to use `jre_headless`. +- `jre` now defaults to GTK UI by default. This improves visual consistency and makes Java follow system font style, improving the situation on HighDPI displays. This has a cost of increased closure size; for server and other headless workloads it's recommended to use `jre_headless`. - Python 2.6 interpreter and package set have been removed. diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1709.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1709.section.md index e5af22721b..9f49549901 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1709.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1709.section.md @@ -8,7 +8,7 @@ In addition to numerous new and upgraded packages, this release has the followin - The user handling now keeps track of deallocated UIDs/GIDs. When a user or group is revived, this allows it to be allocated the UID/GID it had before. A consequence is that UIDs and GIDs are no longer reused. -- The module option `services.xserver.xrandrHeads` now causes the first head specified in this list to be set as the primary head. Apart from that, it\'s now possible to also set additional options by using an attribute set, for example: +- The module option `services.xserver.xrandrHeads` now causes the first head specified in this list to be set as the primary head. Apart from that, it's now possible to also set additional options by using an attribute set, for example: ```nix { services.xserver.xrandrHeads = [ @@ -208,7 +208,7 @@ When upgrading from a previous release, please be aware of the following incompa - The `mysql` default `dataDir` has changed from `/var/mysql` to `/var/lib/mysql`. - - Radicale\'s default package has changed from 1.x to 2.x. Instructions to migrate can be found [ here ](http://radicale.org/1to2/). It is also possible to use the newer version by setting the `package` to `radicale2`, which is done automatically when `stateVersion` is 17.09 or higher. The `extraArgs` option has been added to allow passing the data migration arguments specified in the instructions; see the `radicale.nix` NixOS test for an example migration. + - Radicale's default package has changed from 1.x to 2.x. Instructions to migrate can be found [ here ](http://radicale.org/1to2/). It is also possible to use the newer version by setting the `package` to `radicale2`, which is done automatically when `stateVersion` is 17.09 or higher. The `extraArgs` option has been added to allow passing the data migration arguments specified in the instructions; see the `radicale.nix` NixOS test for an example migration. - The `aiccu` package was removed. This is due to SixXS [ sunsetting](https://www.sixxs.net/main/) its IPv6 tunnel. @@ -216,9 +216,9 @@ When upgrading from a previous release, please be aware of the following incompa - Top-level `idea` package collection was renamed. All JetBrains IDEs are now at `jetbrains`. -- `flexget`\'s state database cannot be upgraded to its new internal format, requiring removal of any existing `db-config.sqlite` which will be automatically recreated. +- `flexget`'s state database cannot be upgraded to its new internal format, requiring removal of any existing `db-config.sqlite` which will be automatically recreated. -- The `ipfs` service now doesn\'t ignore the `dataDir` option anymore. If you\'ve ever set this option to anything other than the default you\'ll have to either unset it (so the default gets used) or migrate the old data manually with +- The `ipfs` service now doesn't ignore the `dataDir` option anymore. If you've ever set this option to anything other than the default you'll have to either unset it (so the default gets used) or migrate the old data manually with ```ShellSession dataDir= @@ -236,15 +236,15 @@ When upgrading from a previous release, please be aware of the following incompa - `wvdial` package and module were removed. This is due to the project being dead and not building with openssl 1.1. -- `cc-wrapper`\'s setup-hook now exports a number of environment variables corresponding to binutils binaries, (e.g. `LD`, `STRIP`, `RANLIB`, etc). This is done to prevent packages\' build systems guessing, which is harder to predict, especially when cross-compiling. However, some packages have broken due to this---their build systems either not supporting, or claiming to support without adequate testing, taking such environment variables as parameters. +- `cc-wrapper`'s setup-hook now exports a number of environment variables corresponding to binutils binaries, (e.g. `LD`, `STRIP`, `RANLIB`, etc). This is done to prevent packages' build systems guessing, which is harder to predict, especially when cross-compiling. However, some packages have broken due to this---their build systems either not supporting, or claiming to support without adequate testing, taking such environment variables as parameters. -- `services.firefox.syncserver` now runs by default as a non-root user. To accomodate this change, the default sqlite database location has also been changed. Migration should work automatically. Refer to the description of the options for more details. +- `services.firefox.syncserver` now runs by default as a non-root user. To accommodate this change, the default sqlite database location has also been changed. Migration should work automatically. Refer to the description of the options for more details. - The `compiz` window manager and package was removed. The system support had been broken for several years. - Touchpad support should now be enabled through `libinput` as `synaptics` is now deprecated. See the option `services.xserver.libinput.enable`. -- grsecurity/PaX support has been dropped, following upstream\'s decision to cease free support. See [ upstream\'s announcement](https://grsecurity.net/passing_the_baton.php) for more information. No complete replacement for grsecurity/PaX is available presently. +- grsecurity/PaX support has been dropped, following upstream's decision to cease free support. See [ upstream's announcement](https://grsecurity.net/passing_the_baton.php) for more information. No complete replacement for grsecurity/PaX is available presently. - `services.mysql` now has declarative configuration of databases and users with the `ensureDatabases` and `ensureUsers` options. @@ -283,9 +283,9 @@ When upgrading from a previous release, please be aware of the following incompa ## Other Notable Changes {#sec-release-17.09-notable-changes} -- Modules can now be disabled by using [ disabledModules](https://nixos.org/nixpkgs/manual/#sec-replace-modules), allowing another to take it\'s place. This can be used to import a set of modules from another channel while keeping the rest of the system on a stable release. +- Modules can now be disabled by using [ disabledModules](https://nixos.org/nixpkgs/manual/#sec-replace-modules), allowing another to take it's place. This can be used to import a set of modules from another channel while keeping the rest of the system on a stable release. -- Updated to FreeType 2.7.1, including a new TrueType engine. The new engine replaces the Infinality engine which was the default in NixOS. The default font rendering settings are now provided by fontconfig-penultimate, replacing fontconfig-ultimate; the new defaults are less invasive and provide rendering that is more consistent with other systems and hopefully with each font designer\'s intent. Some system-wide configuration has been removed from the Fontconfig NixOS module where user Fontconfig settings are available. +- Updated to FreeType 2.7.1, including a new TrueType engine. The new engine replaces the Infinality engine which was the default in NixOS. The default font rendering settings are now provided by fontconfig-penultimate, replacing fontconfig-ultimate; the new defaults are less invasive and provide rendering that is more consistent with other systems and hopefully with each font designer's intent. Some system-wide configuration has been removed from the Fontconfig NixOS module where user Fontconfig settings are available. - ZFS/SPL have been updated to 0.7.0, `zfsUnstable, splUnstable` have therefore been removed. diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1803.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1803.section.md index c5146015d4..681894eb13 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1803.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1803.section.md @@ -6,7 +6,7 @@ In addition to numerous new and upgraded packages, this release has the followin - End of support is planned for end of October 2018, handing over to 18.09. -- Platform support: x86_64-linux and x86_64-darwin since release time (the latter isn\'t NixOS, really). Binaries for aarch64-linux are available, but no channel exists yet, as it\'s waiting for some test fixes, etc. +- Platform support: x86_64-linux and x86_64-darwin since release time (the latter isn't NixOS, really). Binaries for aarch64-linux are available, but no channel exists yet, as it's waiting for some test fixes, etc. - Nix now defaults to 2.0; see its [release notes](https://nixos.org/nix/manual/#ssec-relnotes-2.0). @@ -176,7 +176,7 @@ When upgrading from a previous release, please be aware of the following incompa - `cc-wrapper` has been split in two; there is now also a `bintools-wrapper`. The most commonly used files in `nix-support` are now split between the two wrappers. Some commonly used ones, like `nix-support/dynamic-linker`, are duplicated for backwards compatability, even though they rightly belong only in `bintools-wrapper`. Other more obscure ones are just moved. -- The propagation logic has been changed. The new logic, along with new types of dependencies that go with, is thoroughly documented in the \"Specifying dependencies\" section of the \"Standard Environment\" chapter of the nixpkgs manual. The old logic isn\'t but is easy to describe: dependencies were propagated as the same type of dependency no matter what. In practice, that means that many `propagatedNativeBuildInputs` should instead be `propagatedBuildInputs`. Thankfully, that was and is the least used type of dependency. Also, it means that some `propagatedBuildInputs` should instead be `depsTargetTargetPropagated`. Other types dependencies should be unaffected. +- The propagation logic has been changed. The new logic, along with new types of dependencies that go with, is thoroughly documented in the "Specifying dependencies" section of the "Standard Environment" chapter of the nixpkgs manual. The old logic isn't but is easy to describe: dependencies were propagated as the same type of dependency no matter what. In practice, that means that many `propagatedNativeBuildInputs` should instead be `propagatedBuildInputs`. Thankfully, that was and is the least used type of dependency. Also, it means that some `propagatedBuildInputs` should instead be `depsTargetTargetPropagated`. Other types dependencies should be unaffected. - `lib.addPassthru drv passthru` is removed. Use `lib.extendDerivation true passthru drv` instead. @@ -184,7 +184,7 @@ When upgrading from a previous release, please be aware of the following incompa - The `hardware.amdHybridGraphics.disable` option was removed for lack of a maintainer. If you still need this module, you may wish to include a copy of it from an older version of nixos in your imports. -- The merging of config options for `services.postfix.config` was buggy. Previously, if other options in the Postfix module like `services.postfix.useSrs` were set and the user set config options that were also set by such options, the resulting config wouldn\'t include all options that were needed. They are now merged correctly. If config options need to be overridden, `lib.mkForce` or `lib.mkOverride` can be used. +- The merging of config options for `services.postfix.config` was buggy. Previously, if other options in the Postfix module like `services.postfix.useSrs` were set and the user set config options that were also set by such options, the resulting config wouldn't include all options that were needed. They are now merged correctly. If config options need to be overridden, `lib.mkForce` or `lib.mkOverride` can be used. - The following changes apply if the `stateVersion` is changed to 18.03 or higher. For `stateVersion = "17.09"` or lower the old behavior is preserved. @@ -204,7 +204,7 @@ When upgrading from a previous release, please be aware of the following incompa - The data directory `/var/lib/piwik` was renamed to `/var/lib/matomo`. All files will be moved automatically on first startup, but you might need to adjust your backup scripts. - - The default `serverName` for the nginx configuration changed from `piwik.${config.networking.hostName}` to `matomo.${config.networking.hostName}.${config.networking.domain}` if `config.networking.domain` is set, `matomo.${config.networking.hostName}` if it is not set. If you change your `serverName`, remember you\'ll need to update the `trustedHosts[]` array in `/var/lib/matomo/config/config.ini.php` as well. + - The default `serverName` for the nginx configuration changed from `piwik.${config.networking.hostName}` to `matomo.${config.networking.hostName}.${config.networking.domain}` if `config.networking.domain` is set, `matomo.${config.networking.hostName}` if it is not set. If you change your `serverName`, remember you'll need to update the `trustedHosts[]` array in `/var/lib/matomo/config/config.ini.php` as well. - The `piwik` user was renamed to `matomo`. The service will adjust ownership automatically for files in the data directory. If you use unix socket authentication, remember to give the new `matomo` user access to the database and to change the `username` to `matomo` in the `[database]` section of `/var/lib/matomo/config/config.ini.php`. @@ -250,7 +250,7 @@ When upgrading from a previous release, please be aware of the following incompa - The option `services.logstash.listenAddress` is now `127.0.0.1` by default. Previously the default behaviour was to listen on all interfaces. -- `services.btrfs.autoScrub` has been added, to periodically check btrfs filesystems for data corruption. If there\'s a correct copy available, it will automatically repair corrupted blocks. +- `services.btrfs.autoScrub` has been added, to periodically check btrfs filesystems for data corruption. If there's a correct copy available, it will automatically repair corrupted blocks. - `displayManager.lightdm.greeters.gtk.clock-format.` has been added, the clock format string (as expected by strftime, e.g. `%H:%M`) to use with the lightdm gtk greeter panel. diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1809.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1809.section.md index 3443db37c9..71afc71d5a 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1809.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1809.section.md @@ -204,11 +204,11 @@ When upgrading from a previous release, please be aware of the following incompa - The `clementine` package points now to the free derivation. `clementineFree` is removed now and `clementineUnfree` points to the package which is bundled with the unfree `libspotify` package. -- The `netcat` package is now taken directly from OpenBSD\'s `libressl`, instead of relying on Debian\'s fork. The new version should be very close to the old version, but there are some minor differences. Importantly, flags like -b, -q, -C, and -Z are no longer accepted by the nc command. +- The `netcat` package is now taken directly from OpenBSD's `libressl`, instead of relying on Debian's fork. The new version should be very close to the old version, but there are some minor differences. Importantly, flags like -b, -q, -C, and -Z are no longer accepted by the nc command. -- The `services.docker-registry.extraConfig` object doesn\'t contain environment variables anymore. Instead it needs to provide an object structure that can be mapped onto the YAML configuration defined in [the `docker/distribution` docs](https://github.com/docker/distribution/blob/v2.6.2/docs/configuration.md). +- The `services.docker-registry.extraConfig` object doesn't contain environment variables anymore. Instead it needs to provide an object structure that can be mapped onto the YAML configuration defined in [the `docker/distribution` docs](https://github.com/docker/distribution/blob/v2.6.2/docs/configuration.md). -- `gnucash` has changed from version 2.4 to 3.x. If you\'ve been using `gnucash` (version 2.4) instead of `gnucash26` (version 2.6) you must open your Gnucash data file(s) with `gnucash26` and then save them to upgrade the file format. Then you may use your data file(s) with Gnucash 3.x. See the upgrade [documentation](https://wiki.gnucash.org/wiki/FAQ#Using_Different_Versions.2C_Up_And_Downgrade). Gnucash 2.4 is still available under the attribute `gnucash24`. +- `gnucash` has changed from version 2.4 to 3.x. If you've been using `gnucash` (version 2.4) instead of `gnucash26` (version 2.6) you must open your Gnucash data file(s) with `gnucash26` and then save them to upgrade the file format. Then you may use your data file(s) with Gnucash 3.x. See the upgrade [documentation](https://wiki.gnucash.org/wiki/FAQ#Using_Different_Versions.2C_Up_And_Downgrade). Gnucash 2.4 is still available under the attribute `gnucash24`. - `services.munge` now runs as user (and group) `munge` instead of root. Make sure the key file is accessible to the daemon. @@ -315,7 +315,7 @@ When upgrading from a previous release, please be aware of the following incompa - The Kubernetes Dashboard now has only minimal RBAC permissions by default. If dashboard cluster-admin rights are desired, set `services.kubernetes.addons.dashboard.rbac.clusterAdmin` to true. On existing clusters, in order for the revocation of privileges to take effect, the current ClusterRoleBinding for kubernetes-dashboard must be manually removed: `kubectl delete clusterrolebinding kubernetes-dashboard` -- The `programs.screen` module provides allows to configure `/etc/screenrc`, however the module behaved fairly counterintuitive as the config exists, but the package wasn\'t available. Since 18.09 `pkgs.screen` will be added to `environment.systemPackages`. +- The `programs.screen` module provides allows to configure `/etc/screenrc`, however the module behaved fairly counterintuitive as the config exists, but the package wasn't available. Since 18.09 `pkgs.screen` will be added to `environment.systemPackages`. - The module `services.networking.hostapd` now uses WPA2 by default. @@ -327,6 +327,6 @@ When upgrading from a previous release, please be aware of the following incompa - The default display manager is now LightDM. To use SLiM set `services.xserver.displayManager.slim.enable` to `true`. -- NixOS option descriptions are now automatically broken up into individual paragraphs if the text contains two consecutive newlines, so it\'s no longer necessary to use `` to start a new paragraph. +- NixOS option descriptions are now automatically broken up into individual paragraphs if the text contains two consecutive newlines, so it's no longer necessary to use `` to start a new paragraph. - Top-level `buildPlatform`, `hostPlatform`, and `targetPlatform` in Nixpkgs are deprecated. Please use their equivalents in `stdenv` instead: `stdenv.buildPlatform`, `stdenv.hostPlatform`, and `stdenv.targetPlatform`. diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1903.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1903.section.md index 7637a70c1b..b43518c471 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1903.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1903.section.md @@ -11,11 +11,11 @@ In addition to numerous new and upgraded packages, this release has the followin - Added the Pantheon desktop environment. It can be enabled through `services.xserver.desktopManager.pantheon.enable`. ::: {.note} - By default, `services.xserver.desktopManager.pantheon` enables LightDM as a display manager, as pantheon\'s screen locking implementation relies on it. - Because of that it is recommended to leave LightDM enabled. If you\'d like to disable it anyway, set `services.xserver.displayManager.lightdm.enable` to `false` and enable your preferred display manager. + By default, `services.xserver.desktopManager.pantheon` enables LightDM as a display manager, as pantheon's screen locking implementation relies on it. + Because of that it is recommended to leave LightDM enabled. If you'd like to disable it anyway, set `services.xserver.displayManager.lightdm.enable` to `false` and enable your preferred display manager. ::: - Also note that Pantheon\'s LightDM greeter is not enabled by default, because it has numerous issues in NixOS and isn\'t optimal for use here yet. + Also note that Pantheon's LightDM greeter is not enabled by default, because it has numerous issues in NixOS and isn't optimal for use here yet. - A major refactoring of the Kubernetes module has been completed. Refactorings primarily focus on decoupling components and enhancing security. Two-way TLS and RBAC has been enabled by default for all components, which slightly changes the way the module is configured. See: [](#sec-kubernetes) for details. @@ -57,7 +57,7 @@ When upgrading from a previous release, please be aware of the following incompa - The Syncthing state and configuration data has been moved from `services.syncthing.dataDir` to the newly defined `services.syncthing.configDir`, which default to `/var/lib/syncthing/.config/syncthing`. This change makes possible to share synced directories using ACLs without Syncthing resetting the permission on every start. -- The `ntp` module now has sane default restrictions. If you\'re relying on the previous defaults, which permitted all queries and commands from all firewall-permitted sources, you can set `services.ntp.restrictDefault` and `services.ntp.restrictSource` to `[]`. +- The `ntp` module now has sane default restrictions. If you're relying on the previous defaults, which permitted all queries and commands from all firewall-permitted sources, you can set `services.ntp.restrictDefault` and `services.ntp.restrictSource` to `[]`. - Package `rabbitmq_server` is renamed to `rabbitmq-server`. @@ -73,7 +73,7 @@ When upgrading from a previous release, please be aware of the following incompa - OpenSMTPD has been upgraded to version 6.4.0p1. This release makes backwards-incompatible changes to the configuration file format. See `man smtpd.conf` for more information on the new file format. -- The versioned `postgresql` have been renamed to use underscore number seperators. For example, `postgresql96` has been renamed to `postgresql_9_6`. +- The versioned `postgresql` have been renamed to use underscore number separators. For example, `postgresql96` has been renamed to `postgresql_9_6`. - Package `consul-ui` and passthrough `consul.ui` have been removed. The package `consul` now uses upstream releases that vendor the UI into the binary. See [\#48714](https://github.com/NixOS/nixpkgs/pull/48714#issuecomment-433454834) for details. @@ -89,9 +89,9 @@ When upgrading from a previous release, please be aware of the following incompa - The option `services.xserver.displayManager.job.logToFile` which was previously set to `true` when using the display managers `lightdm`, `sddm` or `xpra` has been reset to the default value (`false`). -- Network interface indiscriminate NixOS firewall options (`networking.firewall.allow*`) are now preserved when also setting interface specific rules such as `networking.firewall.interfaces.en0.allow*`. These rules continue to use the pseudo device \"default\" (`networking.firewall.interfaces.default.*`), and assigning to this pseudo device will override the (`networking.firewall.allow*`) options. +- Network interface indiscriminate NixOS firewall options (`networking.firewall.allow*`) are now preserved when also setting interface specific rules such as `networking.firewall.interfaces.en0.allow*`. These rules continue to use the pseudo device "default" (`networking.firewall.interfaces.default.*`), and assigning to this pseudo device will override the (`networking.firewall.allow*`) options. -- The `nscd` service now disables all caching of `passwd` and `group` databases by default. This was interferring with the correct functioning of the `libnss_systemd.so` module which is used by `systemd` to manage uids and usernames in the presence of `DynamicUser=` in systemd services. This was already the default behaviour in presence of `services.sssd.enable = true` because nscd caching would interfere with `sssd` in unpredictable ways as well. Because we\'re using nscd not for caching, but for convincing glibc to find NSS modules in the nix store instead of an absolute path, we have decided to disable caching globally now, as it\'s usually not the behaviour the user wants and can lead to surprising behaviour. Furthermore, negative caching of host lookups is also disabled now by default. This should fix the issue of dns lookups failing in the presence of an unreliable network. +- The `nscd` service now disables all caching of `passwd` and `group` databases by default. This was interferring with the correct functioning of the `libnss_systemd.so` module which is used by `systemd` to manage uids and usernames in the presence of `DynamicUser=` in systemd services. This was already the default behaviour in presence of `services.sssd.enable = true` because nscd caching would interfere with `sssd` in unpredictable ways as well. Because we're using nscd not for caching, but for convincing glibc to find NSS modules in the nix store instead of an absolute path, we have decided to disable caching globally now, as it's usually not the behaviour the user wants and can lead to surprising behaviour. Furthermore, negative caching of host lookups is also disabled now by default. This should fix the issue of dns lookups failing in the presence of an unreliable network. If the old behaviour is desired, this can be restored by setting the `services.nscd.config` option with the desired caching parameters. @@ -137,7 +137,7 @@ When upgrading from a previous release, please be aware of the following incompa - The `pam_unix` account module is now loaded with its control field set to `required` instead of `sufficient`, so that later PAM account modules that might do more extensive checks are being executed. Previously, the whole account module verification was exited prematurely in case a nss module provided the account name to `pam_unix`. The LDAP and SSSD NixOS modules already add their NSS modules when enabled. In case your setup breaks due to some later PAM account module previosuly shadowed, or failing NSS lookups, please file a bug. You can get back the old behaviour by manually setting `security.pam.services..text`. -- The `pam_unix` password module is now loaded with its control field set to `sufficient` instead of `required`, so that password managed only by later PAM password modules are being executed. Previously, for example, changing an LDAP account\'s password through PAM was not possible: the whole password module verification was exited prematurely by `pam_unix`, preventing `pam_ldap` to manage the password as it should. +- The `pam_unix` password module is now loaded with its control field set to `sufficient` instead of `required`, so that password managed only by later PAM password modules are being executed. Previously, for example, changing an LDAP account's password through PAM was not possible: the whole password module verification was exited prematurely by `pam_unix`, preventing `pam_ldap` to manage the password as it should. - `fish` has been upgraded to 3.0. It comes with a number of improvements and backwards incompatible changes. See the `fish` [release notes](https://github.com/fish-shell/fish-shell/releases/tag/3.0.0) for more information. @@ -145,7 +145,7 @@ When upgrading from a previous release, please be aware of the following incompa - NixOS module system type `types.optionSet` and `lib.mkOption` argument `options` are deprecated. Use `types.submodule` instead. ([\#54637](https://github.com/NixOS/nixpkgs/pull/54637)) -- `matrix-synapse` has been updated to version 0.99. It will [no longer generate a self-signed certificate on first launch](https://github.com/matrix-org/synapse/pull/4509) and will be [the last version to accept self-signed certificates](https://matrix.org/blog/2019/02/05/synapse-0-99-0/). As such, it is now recommended to use a proper certificate verified by a root CA (for example Let\'s Encrypt). The new [manual chapter on Matrix](#module-services-matrix) contains a working example of using nginx as a reverse proxy in front of `matrix-synapse`, using Let\'s Encrypt certificates. +- `matrix-synapse` has been updated to version 0.99. It will [no longer generate a self-signed certificate on first launch](https://github.com/matrix-org/synapse/pull/4509) and will be [the last version to accept self-signed certificates](https://matrix.org/blog/2019/02/05/synapse-0-99-0/). As such, it is now recommended to use a proper certificate verified by a root CA (for example Let's Encrypt). The new [manual chapter on Matrix](#module-services-matrix) contains a working example of using nginx as a reverse proxy in front of `matrix-synapse`, using Let's Encrypt certificates. - `mailutils` now works by default when `sendmail` is not in a setuid wrapper. As a consequence, the `sendmailPath` argument, having lost its main use, has been removed. @@ -191,7 +191,7 @@ When upgrading from a previous release, please be aware of the following incompa With this change application specific volumes are relative to the master volume which can be adjusted independently, whereas before they were absolute; meaning that in effect, it scaled the device-volume with the volume of the loudest application. ::: -- The [`ndppd`](https://github.com/DanielAdolfsson/ndppd) module now supports [all config options](options.html#opt-services.ndppd.enable) provided by the current upstream version as service options. Additionally the `ndppd` package doesn\'t contain the systemd unit configuration from upstream anymore, the unit is completely configured by the NixOS module now. +- The [`ndppd`](https://github.com/DanielAdolfsson/ndppd) module now supports [all config options](options.html#opt-services.ndppd.enable) provided by the current upstream version as service options. Additionally the `ndppd` package doesn't contain the systemd unit configuration from upstream anymore, the unit is completely configured by the NixOS module now. - New installs of NixOS will default to the Redmine 4.x series unless otherwise specified in `services.redmine.package` while existing installs of NixOS will default to the Redmine 3.x series. diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1909.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1909.section.md index 572f1bf5a2..4283523881 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1909.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-1909.section.md @@ -34,7 +34,7 @@ In addition to numerous new and upgraded packages, this release has the followin - The installer now uses a less privileged `nixos` user whereas before we logged in as root. To gain root privileges use `sudo -i` without a password. -- We\'ve updated to Xfce 4.14, which brings a new module `services.xserver.desktopManager.xfce4-14`. If you\'d like to upgrade, please switch from the `services.xserver.desktopManager.xfce` module as it will be deprecated in a future release. They\'re incompatibilities with the current Xfce module; it doesn\'t support `thunarPlugins` and it isn\'t recommended to use `services.xserver.desktopManager.xfce` and `services.xserver.desktopManager.xfce4-14` simultaneously or to downgrade from Xfce 4.14 after upgrading. +- We've updated to Xfce 4.14, which brings a new module `services.xserver.desktopManager.xfce4-14`. If you'd like to upgrade, please switch from the `services.xserver.desktopManager.xfce` module as it will be deprecated in a future release. They're incompatibilities with the current Xfce module; it doesn't support `thunarPlugins` and it isn't recommended to use `services.xserver.desktopManager.xfce` and `services.xserver.desktopManager.xfce4-14` simultaneously or to downgrade from Xfce 4.14 after upgrading. - The GNOME 3 desktop manager module sports an interface to enable/disable core services, applications, and optional GNOME packages like games. @@ -46,9 +46,9 @@ In addition to numerous new and upgraded packages, this release has the followin - `services.gnome3.games.enable` - With these options we hope to give users finer grained control over their systems. Prior to this change you\'d either have to manually disable options or use `environment.gnome3.excludePackages` which only excluded the optional applications. `environment.gnome3.excludePackages` is now unguarded, it can exclude any package installed with `environment.systemPackages` in the GNOME 3 module. + With these options we hope to give users finer grained control over their systems. Prior to this change you'd either have to manually disable options or use `environment.gnome3.excludePackages` which only excluded the optional applications. `environment.gnome3.excludePackages` is now unguarded, it can exclude any package installed with `environment.systemPackages` in the GNOME 3 module. -- Orthogonal to the previous changes to the GNOME 3 desktop manager module, we\'ve updated all default services and applications to match as close as possible to a default reference GNOME 3 experience. +- Orthogonal to the previous changes to the GNOME 3 desktop manager module, we've updated all default services and applications to match as close as possible to a default reference GNOME 3 experience. **The following changes were enacted in `services.gnome3.core-utilities.enable`** @@ -104,7 +104,7 @@ The following new services were added since the last release: - `services.xserver.desktopManager.pantheon` - - `services.xserver.desktopManager.mate` Note Mate uses `programs.system-config-printer` as it doesn\'t use it as a service, but its graphical interface directly. + - `services.xserver.desktopManager.mate` Note Mate uses `programs.system-config-printer` as it doesn't use it as a service, but its graphical interface directly. - [services.blueman.enable](options.html#opt-services.blueman.enable) has been added. If you previously had blueman installed via `environment.systemPackages` please migrate to using the NixOS module, as this would result in an insufficiently configured blueman. @@ -118,11 +118,11 @@ When upgrading from a previous release, please be aware of the following incompa - PostgreSQL 9.4 is scheduled EOL during the 19.09 life cycle and has been removed. -- The options `services.prometheus.alertmanager.user` and `services.prometheus.alertmanager.group` have been removed because the alertmanager service is now using systemd\'s [ DynamicUser mechanism](http://0pointer.net/blog/dynamic-users-with-systemd.html) which obviates these options. +- The options `services.prometheus.alertmanager.user` and `services.prometheus.alertmanager.group` have been removed because the alertmanager service is now using systemd's [ DynamicUser mechanism](http://0pointer.net/blog/dynamic-users-with-systemd.html) which obviates these options. - The NetworkManager systemd unit was renamed back from network-manager.service to NetworkManager.service for better compatibility with other applications expecting this name. The same applies to ModemManager where modem-manager.service is now called ModemManager.service again. -- The `services.nzbget.configFile` and `services.nzbget.openFirewall` options were removed as they are managed internally by the nzbget. The `services.nzbget.dataDir` option hadn\'t actually been used by the module for some time and so was removed as cleanup. +- The `services.nzbget.configFile` and `services.nzbget.openFirewall` options were removed as they are managed internally by the nzbget. The `services.nzbget.dataDir` option hadn't actually been used by the module for some time and so was removed as cleanup. - The `services.mysql.pidDir` option was removed, as it was only used by the wordpress apache-httpd service to wait for mysql to have started up. This can be accomplished by either describing a dependency on mysql.service (preferred) or waiting for the (hardcoded) `/run/mysqld/mysql.sock` file to appear. @@ -148,19 +148,19 @@ When upgrading from a previous release, please be aware of the following incompa A new knob named `nixops.enableDeprecatedAutoLuks` has been introduced to disable the eval failure and to acknowledge the notice was received and read. If you plan on using the feature please note that it might break with subsequent updates. - Make sure you set the `_netdev` option for each of the file systems referring to block devices provided by the autoLuks module. Not doing this might render the system in a state where it doesn\'t boot anymore. + Make sure you set the `_netdev` option for each of the file systems referring to block devices provided by the autoLuks module. Not doing this might render the system in a state where it doesn't boot anymore. If you are actively using the `autoLuks` module please let us know in [issue \#62211](https://github.com/NixOS/nixpkgs/issues/62211). - The setopt declarations will be evaluated at the end of `/etc/zshrc`, so any code in [programs.zsh.interactiveShellInit](options.html#opt-programs.zsh.interactiveShellInit), [programs.zsh.loginShellInit](options.html#opt-programs.zsh.loginShellInit) and [programs.zsh.promptInit](options.html#opt-programs.zsh.promptInit) may break if it relies on those options being set. -- The `prometheus-nginx-exporter` package now uses the offical exporter provided by NGINX Inc. Its metrics are differently structured and are incompatible to the old ones. For information about the metrics, have a look at the [official repo](https://github.com/nginxinc/nginx-prometheus-exporter). +- The `prometheus-nginx-exporter` package now uses the official exporter provided by NGINX Inc. Its metrics are differently structured and are incompatible to the old ones. For information about the metrics, have a look at the [official repo](https://github.com/nginxinc/nginx-prometheus-exporter). - The `shibboleth-sp` package has been updated to version 3. It is largely backward compatible, for further information refer to the [release notes](https://wiki.shibboleth.net/confluence/display/SP3/ReleaseNotes) and [upgrade guide](https://wiki.shibboleth.net/confluence/display/SP3/UpgradingFromV2). Nodejs 8 is scheduled EOL under the lifetime of 19.09 and has been dropped. -- By default, prometheus exporters are now run with `DynamicUser` enabled. Exporters that need a real user, now run under a seperate user and group which follow the pattern `-exporter`, instead of the previous default `nobody` and `nogroup`. Only some exporters are affected by the latter, namely the exporters `dovecot`, `node`, `postfix` and `varnish`. +- By default, prometheus exporters are now run with `DynamicUser` enabled. Exporters that need a real user, now run under a separate user and group which follow the pattern `-exporter`, instead of the previous default `nobody` and `nogroup`. Only some exporters are affected by the latter, namely the exporters `dovecot`, `node`, `postfix` and `varnish`. - The `ibus-qt` package is not installed by default anymore when [i18n.inputMethod.enabled](options.html#opt-i18n.inputMethod.enabled) is set to `ibus`. If IBus support in Qt 4.x applications is required, add the `ibus-qt` package to your [environment.systemPackages](options.html#opt-environment.systemPackages) manually. @@ -196,13 +196,13 @@ When upgrading from a previous release, please be aware of the following incompa Furthermore, the acme module will not automatically add a dependency on `lighttpd.service` anymore. If you are using certficates provided by letsencrypt for lighttpd, then you should depend on the certificate service `acme-${cert}.service>` manually. - For nginx, the dependencies are still automatically managed when `services.nginx.virtualhosts..enableACME` is enabled just like before. What changed is that nginx now directly depends on the specific certificates that it needs, instead of depending on the catch-all `acme-certificates.target`. This target unit was also removed from the codebase. This will mean nginx will no longer depend on certificates it isn\'t explicitly managing and fixes a bug with certificate renewal ordering racing with nginx restarting which could lead to nginx getting in a broken state as described at [NixOS/nixpkgs\#60180](https://github.com/NixOS/nixpkgs/issues/60180). + For nginx, the dependencies are still automatically managed when `services.nginx.virtualhosts..enableACME` is enabled just like before. What changed is that nginx now directly depends on the specific certificates that it needs, instead of depending on the catch-all `acme-certificates.target`. This target unit was also removed from the codebase. This will mean nginx will no longer depend on certificates it isn't explicitly managing and fixes a bug with certificate renewal ordering racing with nginx restarting which could lead to nginx getting in a broken state as described at [NixOS/nixpkgs\#60180](https://github.com/NixOS/nixpkgs/issues/60180). - The old deprecated `emacs` package sets have been dropped. What used to be called `emacsPackagesNg` is now simply called `emacsPackages`. -- `services.xserver.desktopManager.xterm` is now disabled by default if `stateVersion` is 19.09 or higher. Previously the xterm desktopManager was enabled when xserver was enabled, but it isn\'t useful for all people so it didn\'t make sense to have any desktopManager enabled default. +- `services.xserver.desktopManager.xterm` is now disabled by default if `stateVersion` is 19.09 or higher. Previously the xterm desktopManager was enabled when xserver was enabled, but it isn't useful for all people so it didn't make sense to have any desktopManager enabled default. -- The WeeChat plugin `pkgs.weechatScripts.weechat-xmpp` has been removed as it doesn\'t receive any updates from upstream and depends on outdated Python2-based modules. +- The WeeChat plugin `pkgs.weechatScripts.weechat-xmpp` has been removed as it doesn't receive any updates from upstream and depends on outdated Python2-based modules. - Old unsupported versions (`logstash5`, `kibana5`, `filebeat5`, `heartbeat5`, `metricbeat5`, `packetbeat5`) of the ELK-stack and Elastic beats have been removed. @@ -210,7 +210,7 @@ When upgrading from a previous release, please be aware of the following incompa - Citrix Receiver (`citrix_receiver`) has been dropped in favor of Citrix Workspace (`citrix_workspace`). -- The `services.gitlab` module has had its literal secret options (`services.gitlab.smtp.password`, `services.gitlab.databasePassword`, `services.gitlab.initialRootPassword`, `services.gitlab.secrets.secret`, `services.gitlab.secrets.db`, `services.gitlab.secrets.otp` and `services.gitlab.secrets.jws`) replaced by file-based versions (`services.gitlab.smtp.passwordFile`, `services.gitlab.databasePasswordFile`, `services.gitlab.initialRootPasswordFile`, `services.gitlab.secrets.secretFile`, `services.gitlab.secrets.dbFile`, `services.gitlab.secrets.otpFile` and `services.gitlab.secrets.jwsFile`). This was done so that secrets aren\'t stored in the world-readable nix store, but means that for each option you\'ll have to create a file with the same exact string, add \"File\" to the end of the option name, and change the definition to a string pointing to the corresponding file; e.g. `services.gitlab.databasePassword = "supersecurepassword"` becomes `services.gitlab.databasePasswordFile = "/path/to/secret_file"` where the file `secret_file` contains the string `supersecurepassword`. +- The `services.gitlab` module has had its literal secret options (`services.gitlab.smtp.password`, `services.gitlab.databasePassword`, `services.gitlab.initialRootPassword`, `services.gitlab.secrets.secret`, `services.gitlab.secrets.db`, `services.gitlab.secrets.otp` and `services.gitlab.secrets.jws`) replaced by file-based versions (`services.gitlab.smtp.passwordFile`, `services.gitlab.databasePasswordFile`, `services.gitlab.initialRootPasswordFile`, `services.gitlab.secrets.secretFile`, `services.gitlab.secrets.dbFile`, `services.gitlab.secrets.otpFile` and `services.gitlab.secrets.jwsFile`). This was done so that secrets aren't stored in the world-readable nix store, but means that for each option you'll have to create a file with the same exact string, add "File" to the end of the option name, and change the definition to a string pointing to the corresponding file; e.g. `services.gitlab.databasePassword = "supersecurepassword"` becomes `services.gitlab.databasePasswordFile = "/path/to/secret_file"` where the file `secret_file` contains the string `supersecurepassword`. The state path (`services.gitlab.statePath`) now has the following restriction: no parent directory can be owned by any other user than `root` or the user specified in `services.gitlab.user`; i.e. if `services.gitlab.statePath` is set to `/var/lib/gitlab/state`, `gitlab` and all parent directories must be owned by either `root` or the user specified in `services.gitlab.user`. @@ -218,7 +218,7 @@ When upgrading from a previous release, please be aware of the following incompa - The Twitter client `corebird` has been dropped as [it is discontinued and does not work against the new Twitter API](https://www.patreon.com/posts/corebirds-future-18921328). Please use the fork `cawbird` instead which has been adapted to the API changes and is still maintained. -- The `nodejs-11_x` package has been removed as it\'s EOLed by upstream. +- The `nodejs-11_x` package has been removed as it's EOLed by upstream. - Because of the systemd upgrade, systemd-timesyncd will no longer work if `system.stateVersion` is not set correctly. When upgrading from NixOS 19.03, please make sure that `system.stateVersion` is set to `"19.03"`, or lower if the installation dates back to an earlier version of NixOS. @@ -252,7 +252,7 @@ When upgrading from a previous release, please be aware of the following incompa - The `consul` package was upgraded past version `1.5`, so its deprecated legacy UI is no longer available. -- The default resample-method for PulseAudio has been changed from the upstream default `speex-float-1` to `speex-float-5`. Be aware that low-powered ARM-based and MIPS-based boards will struggle with this so you\'ll need to set `hardware.pulseaudio.daemon.config.resample-method` back to `speex-float-1`. +- The default resample-method for PulseAudio has been changed from the upstream default `speex-float-1` to `speex-float-5`. Be aware that low-powered ARM-based and MIPS-based boards will struggle with this so you'll need to set `hardware.pulseaudio.daemon.config.resample-method` back to `speex-float-1`. - The `phabricator` package and associated `httpd.extraSubservice`, as well as the `phd` service have been removed from nixpkgs due to lack of maintainer. @@ -264,7 +264,7 @@ When upgrading from a previous release, please be aware of the following incompa - The `tomcat-connector` `httpd.extraSubservice` has been removed from nixpkgs. -- It\'s now possible to change configuration in [services.nextcloud](options.html#opt-services.nextcloud.enable) after the initial deploy since all config parameters are persisted in an additional config file generated by the module. Previously core configuration like database parameters were set using their imperative installer after creating `/var/lib/nextcloud`. +- It's now possible to change configuration in [services.nextcloud](options.html#opt-services.nextcloud.enable) after the initial deploy since all config parameters are persisted in an additional config file generated by the module. Previously core configuration like database parameters were set using their imperative installer after creating `/var/lib/nextcloud`. - There exists now `lib.forEach`, which is like `map`, but with arguments flipped. When mapping function body spans many lines (or has nested `map`s), it is often hard to follow which list is modified. @@ -308,6 +308,6 @@ When upgrading from a previous release, please be aware of the following incompa - The `altcoins` categorization of packages has been removed. You now access these packages at the top level, ie. `nix-shell -p dogecoin` instead of `nix-shell -p altcoins.dogecoin`, etc. -- Ceph has been upgraded to v14.2.1. See the [release notes](https://ceph.com/releases/v14-2-0-nautilus-released/) for details. The mgr dashboard as well as osds backed by loop-devices is no longer explicitly supported by the package and module. Note: There\'s been some issues with python-cherrypy, which is used by the dashboard and prometheus mgr modules (and possibly others), hence 0000-dont-check-cherrypy-version.patch. +- Ceph has been upgraded to v14.2.1. See the [release notes](https://ceph.com/releases/v14-2-0-nautilus-released/) for details. The mgr dashboard as well as osds backed by loop-devices is no longer explicitly supported by the package and module. Note: There's been some issues with python-cherrypy, which is used by the dashboard and prometheus mgr modules (and possibly others), hence 0000-dont-check-cherrypy-version.patch. - `pkgs.weechat` is now compiled against `pkgs.python3`. Weechat also recommends [to use Python3 in their docs.](https://weechat.org/scripts/python3/) diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2003.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2003.section.md index b92c7f6634..76cee8858e 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2003.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2003.section.md @@ -34,11 +34,11 @@ In addition to numerous new and upgraded packages, this release has the followin - Postgresql for NixOS service now defaults to v11. -- The graphical installer image starts the graphical session automatically. Before you\'d be greeted by a tty and asked to enter `systemctl start display-manager`. It is now possible to disable the display-manager from running by selecting the `Disable display-manager` quirk in the boot menu. +- The graphical installer image starts the graphical session automatically. Before you'd be greeted by a tty and asked to enter `systemctl start display-manager`. It is now possible to disable the display-manager from running by selecting the `Disable display-manager` quirk in the boot menu. - GNOME 3 has been upgraded to 3.34. Please take a look at their [Release Notes](https://help.gnome.org/misc/release-notes/3.34) for details. -- If you enable the Pantheon Desktop Manager via [services.xserver.desktopManager.pantheon.enable](options.html#opt-services.xserver.desktopManager.pantheon.enable), we now default to also use [ Pantheon\'s newly designed greeter ](https://blog.elementary.io/say-hello-to-the-new-greeter/). Contrary to NixOS\'s usual update policy, Pantheon will receive updates during the cycle of NixOS 20.03 when backwards compatible. +- If you enable the Pantheon Desktop Manager via [services.xserver.desktopManager.pantheon.enable](options.html#opt-services.xserver.desktopManager.pantheon.enable), we now default to also use [ Pantheon's newly designed greeter ](https://blog.elementary.io/say-hello-to-the-new-greeter/). Contrary to NixOS's usual update policy, Pantheon will receive updates during the cycle of NixOS 20.03 when backwards compatible. - By default zfs pools will now be trimmed on a weekly basis. Trimming is only done on supported devices (i.e. NVME or SSDs) and should improve throughput and lifetime of these devices. It is controlled by the `services.zfs.trim.enable` varname. The zfs scrub service (`services.zfs.autoScrub.enable`) and the zfs autosnapshot service (`services.zfs.autoSnapshot.enable`) are now only enabled if zfs is set in `config.boot.initrd.supportedFilesystems` or `config.boot.supportedFilesystems`. These lists will automatically contain zfs as soon as any zfs mountpoint is configured in `fileSystems`. @@ -77,7 +77,7 @@ The following new services were added since the last release: - The kubernetes kube-proxy now supports a new hostname configuration `services.kubernetes.proxy.hostname` which has to be set if the hostname of the node should be non default. -- UPower\'s configuration is now managed by NixOS and can be customized via `services.upower`. +- UPower's configuration is now managed by NixOS and can be customized via `services.upower`. - To use Geary you should enable [programs.geary.enable](options.html#opt-programs.geary.enable) instead of just adding it to [environment.systemPackages](options.html#opt-environment.systemPackages). It was created so Geary could function properly outside of GNOME. @@ -187,9 +187,9 @@ When upgrading from a previous release, please be aware of the following incompa - The `99-main.network` file was removed. Matching all network interfaces caused many breakages, see [\#18962](https://github.com/NixOS/nixpkgs/pull/18962) and [\#71106](https://github.com/NixOS/nixpkgs/pull/71106). - We already don\'t support the global [networking.useDHCP](options.html#opt-networking.useDHCP), [networking.defaultGateway](options.html#opt-networking.defaultGateway) and [networking.defaultGateway6](options.html#opt-networking.defaultGateway6) options if [networking.useNetworkd](options.html#opt-networking.useNetworkd) is enabled, but direct users to configure the per-device [networking.interfaces.\....](options.html#opt-networking.interfaces) options. + We already don't support the global [networking.useDHCP](options.html#opt-networking.useDHCP), [networking.defaultGateway](options.html#opt-networking.defaultGateway) and [networking.defaultGateway6](options.html#opt-networking.defaultGateway6) options if [networking.useNetworkd](options.html#opt-networking.useNetworkd) is enabled, but direct users to configure the per-device [networking.interfaces.\....](options.html#opt-networking.interfaces) options. -- The stdenv now runs all bash with `set -u`, to catch the use of undefined variables. Before, it itself used `set -u` but was careful to unset it so other packages\' code ran as before. Now, all bash code is held to the same high standard, and the rather complex stateful manipulation of the options can be discarded. +- The stdenv now runs all bash with `set -u`, to catch the use of undefined variables. Before, it itself used `set -u` but was careful to unset it so other packages' code ran as before. Now, all bash code is held to the same high standard, and the rather complex stateful manipulation of the options can be discarded. - The SLIM Display Manager has been removed, as it has been unmaintained since 2013. Consider migrating to a different display manager such as LightDM (current default in NixOS), SDDM, GDM, or using the startx module which uses Xinitrc. @@ -197,7 +197,7 @@ When upgrading from a previous release, please be aware of the following incompa - The BEAM package set has been deleted. You will only find there the different interpreters. You should now use the different build tools coming with the languages with sandbox mode disabled. -- There is now only one Xfce package-set and module. This means that attributes `xfce4-14` and `xfceUnstable` all now point to the latest Xfce 4.14 packages. And in the future NixOS releases will be the latest released version of Xfce available at the time of the release\'s development (if viable). +- There is now only one Xfce package-set and module. This means that attributes `xfce4-14` and `xfceUnstable` all now point to the latest Xfce 4.14 packages. And in the future NixOS releases will be the latest released version of Xfce available at the time of the release's development (if viable). - The [phpfpm](options.html#opt-services.phpfpm.pools) module now sets `PrivateTmp=true` in its systemd units for better process isolation. If you rely on `/tmp` being shared with other services, explicitly override this by setting `serviceConfig.PrivateTmp` to `false` for each phpfpm unit. @@ -221,7 +221,7 @@ When upgrading from a previous release, please be aware of the following incompa - The packages `openobex` and `obexftp` are no longer installed when enabling Bluetooth via `hardware.bluetooth.enable`. -- The `dump1090` derivation has been changed to use FlightAware\'s dump1090 as its upstream. However, this version does not have an internal webserver anymore. The assets in the `share/dump1090` directory of the derivation can be used in conjunction with an external webserver to replace this functionality. +- The `dump1090` derivation has been changed to use FlightAware's dump1090 as its upstream. However, this version does not have an internal webserver anymore. The assets in the `share/dump1090` directory of the derivation can be used in conjunction with an external webserver to replace this functionality. - The fourStore and fourStoreEndpoint modules have been removed. @@ -291,7 +291,7 @@ When upgrading from a previous release, please be aware of the following incompa - `services.buildkite-agent.meta-data` has been renamed to [services.buildkite-agents.\.tags](options.html#opt-services.buildkite-agents), to match upstreams naming for 3.x. Its type has also changed - it now accepts an attrset of strings. - - The`services.buildkite-agent.openssh.publicKeyPath` option has been removed, as it\'s not necessary to deploy public keys to clone private repositories. + - The`services.buildkite-agent.openssh.publicKeyPath` option has been removed, as it's not necessary to deploy public keys to clone private repositories. - `services.buildkite-agent.openssh.privateKeyPath` has been renamed to [buildkite-agents.\.privateSshKeyPath](options.html#opt-services.buildkite-agents), as the whole `openssh` now only contained that single option. @@ -301,7 +301,7 @@ When upgrading from a previous release, please be aware of the following incompa - The `gcc5` and `gfortran5` packages have been removed. -- The `services.xserver.displayManager.auto` module has been removed. It was only intended for use in internal NixOS tests, and gave the false impression of it being a special display manager when it\'s actually LightDM. Please use the `services.xserver.displayManager.lightdm.autoLogin` options instead, or any other display manager in NixOS as they all support auto-login. If you used this module specifically because it permitted root auto-login you can override the lightdm-autologin pam module like: +- The `services.xserver.displayManager.auto` module has been removed. It was only intended for use in internal NixOS tests, and gave the false impression of it being a special display manager when it's actually LightDM. Please use the `services.xserver.displayManager.lightdm.autoLogin` options instead, or any other display manager in NixOS as they all support auto-login. If you used this module specifically because it permitted root auto-login you can override the lightdm-autologin pam module like: ```nix { @@ -325,13 +325,13 @@ When upgrading from a previous release, please be aware of the following incompa auth required pam_succeed_if.so quiet ``` - line, where default it\'s: + line, where default it's: ``` auth required pam_succeed_if.so uid >= 1000 quiet ``` - not permitting users with uid\'s below 1000 (like root). All other display managers in NixOS are configured like this. + not permitting users with uid's below 1000 (like root). All other display managers in NixOS are configured like this. - There have been lots of improvements to the Mailman module. As a result, @@ -357,9 +357,9 @@ When upgrading from a previous release, please be aware of the following incompa - Rspamd was updated to version 2.2. Read [ the upstream migration notes](https://rspamd.com/doc/migration.html#migration-to-rspamd-20) carefully. Please be especially aware that some modules were removed and the default Bayes backend is now Redis. -- The `*psu` versions of oraclejdk8 have been removed as they aren\'t provided by upstream anymore. +- The `*psu` versions of oraclejdk8 have been removed as they aren't provided by upstream anymore. -- The `services.dnscrypt-proxy` module has been removed as it used the deprecated version of dnscrypt-proxy. We\'ve added [services.dnscrypt-proxy2.enable](options.html#opt-services.dnscrypt-proxy2.enable) to use the supported version. This module supports configuration via the Nix attribute set [services.dnscrypt-proxy2.settings](options.html#opt-services.dnscrypt-proxy2.settings), or by passing a TOML configuration file via [services.dnscrypt-proxy2.configFile](options.html#opt-services.dnscrypt-proxy2.configFile). +- The `services.dnscrypt-proxy` module has been removed as it used the deprecated version of dnscrypt-proxy. We've added [services.dnscrypt-proxy2.enable](options.html#opt-services.dnscrypt-proxy2.enable) to use the supported version. This module supports configuration via the Nix attribute set [services.dnscrypt-proxy2.settings](options.html#opt-services.dnscrypt-proxy2.settings), or by passing a TOML configuration file via [services.dnscrypt-proxy2.configFile](options.html#opt-services.dnscrypt-proxy2.configFile). ```nix { @@ -382,13 +382,13 @@ When upgrading from a previous release, please be aware of the following incompa - `qesteidutil` has been deprecated in favor of `qdigidoc`. -- sqldeveloper_18 has been removed as it\'s not maintained anymore, sqldeveloper has been updated to version `19.4`. Please note that this means that this means that the oraclejdk is now required. For further information please read the [release notes](https://www.oracle.com/technetwork/developer-tools/sql-developer/downloads/sqldev-relnotes-194-5908846.html). +- sqldeveloper_18 has been removed as it's not maintained anymore, sqldeveloper has been updated to version `19.4`. Please note that this means that this means that the oraclejdk is now required. For further information please read the [release notes](https://www.oracle.com/technetwork/developer-tools/sql-developer/downloads/sqldev-relnotes-194-5908846.html). -- Haskell `env` and `shellFor` dev shell environments now organize dependencies the same way as regular builds. In particular, rather than receiving all the different lists of dependencies mashed together as one big list, and then partitioning into Haskell and non-Hakell dependencies, they work from the original many different dependency parameters and don\'t need to algorithmically partition anything. +- Haskell `env` and `shellFor` dev shell environments now organize dependencies the same way as regular builds. In particular, rather than receiving all the different lists of dependencies mashed together as one big list, and then partitioning into Haskell and non-Hakell dependencies, they work from the original many different dependency parameters and don't need to algorithmically partition anything. This means that if you incorrectly categorize a dependency, e.g. non-Haskell library dependency as a `buildDepends` or run-time Haskell dependency as a `setupDepends`, whereas things would have worked before they may not work now. -- The gcc-snapshot-package has been removed. It\'s marked as broken for \>2 years and used to point to a fairly old snapshot from the gcc7-branch. +- The gcc-snapshot-package has been removed. It's marked as broken for \>2 years and used to point to a fairly old snapshot from the gcc7-branch. - The nixos-build-vms8 -script now uses the python test-driver. @@ -398,21 +398,21 @@ When upgrading from a previous release, please be aware of the following incompa - Stand-alone usage of `Upower` now requires `services.upower.enable` instead of just installing into [environment.systemPackages](options.html#opt-environment.systemPackages). -- nextcloud has been updated to `v18.0.2`. This means that users from NixOS 19.09 can\'t upgrade directly since you can only move one version forward and 19.09 uses `v16.0.8`. +- nextcloud has been updated to `v18.0.2`. This means that users from NixOS 19.09 can't upgrade directly since you can only move one version forward and 19.09 uses `v16.0.8`. To provide a safe upgrade-path and to circumvent similar issues in the future, the following measures were taken: - The pkgs.nextcloud-attribute has been removed and replaced with versioned attributes (currently pkgs.nextcloud17 and pkgs.nextcloud18). With this change major-releases can be backported without breaking stuff and to make upgrade-paths easier. - - Existing setups will be detected using [system.stateVersion](options.html#opt-system.stateVersion): by default, nextcloud17 will be used, but will raise a warning which notes that after that deploy it\'s recommended to update to the latest stable version (nextcloud18) by declaring the newly introduced setting [services.nextcloud.package](options.html#opt-services.nextcloud.package). + - Existing setups will be detected using [system.stateVersion](options.html#opt-system.stateVersion): by default, nextcloud17 will be used, but will raise a warning which notes that after that deploy it's recommended to update to the latest stable version (nextcloud18) by declaring the newly introduced setting [services.nextcloud.package](options.html#opt-services.nextcloud.package). - - Users with an overlay (e.g. to use nextcloud at version `v18` on `19.09`) will get an evaluation error by default. This is done to ensure that our [package](options.html#opt-services.nextcloud.package)-option doesn\'t select an older version by accident. It\'s recommended to use pkgs.nextcloud18 or to set [package](options.html#opt-services.nextcloud.package) to pkgs.nextcloud explicitly. + - Users with an overlay (e.g. to use nextcloud at version `v18` on `19.09`) will get an evaluation error by default. This is done to ensure that our [package](options.html#opt-services.nextcloud.package)-option doesn't select an older version by accident. It's recommended to use pkgs.nextcloud18 or to set [package](options.html#opt-services.nextcloud.package) to pkgs.nextcloud explicitly. ::: {.warning} - Please note that if you\'re coming from `19.03` or older, you have to manually upgrade to `19.09` first to upgrade your server to Nextcloud v16. + Please note that if you're coming from `19.03` or older, you have to manually upgrade to `19.09` first to upgrade your server to Nextcloud v16. ::: -- Hydra has gained a massive performance improvement due to [some database schema changes](https://github.com/NixOS/hydra/pull/710) by adding several IDs and better indexing. However, it\'s necessary to upgrade Hydra in multiple steps: +- Hydra has gained a massive performance improvement due to [some database schema changes](https://github.com/NixOS/hydra/pull/710) by adding several IDs and better indexing. However, it's necessary to upgrade Hydra in multiple steps: - At first, an older version of Hydra needs to be deployed which adds those (nullable) columns. When having set [stateVersion ](options.html#opt-system.stateVersion) to a value older than `20.03`, this package will be selected by default from the module when upgrading. Otherwise, the package can be deployed using the following config: @@ -434,13 +434,13 @@ When upgrading from a previous release, please be aware of the following incompa - Deploy a newer version of Hydra to activate the DB optimizations. This can be done by using hydra-unstable. This package already includes [flake-support](https://github.com/nixos/rfcs/pull/49) and is therefore compiled against pkgs.nixFlakes. ::: {.warning} - If your [stateVersion](options.html#opt-system.stateVersion) is set to `20.03` or greater, hydra-unstable will be used automatically! This will break your setup if you didn\'t run the migration. + If your [stateVersion](options.html#opt-system.stateVersion) is set to `20.03` or greater, hydra-unstable will be used automatically! This will break your setup if you didn't run the migration. ::: - Please note that Hydra is currently not available with nixStable as this doesn\'t compile anymore. + Please note that Hydra is currently not available with nixStable as this doesn't compile anymore. ::: {.warning} - pkgs.hydra has been removed to ensure a graceful database-migration using the dedicated package-attributes. If you still have pkgs.hydra defined in e.g. an overlay, an assertion error will be thrown. To circumvent this, you need to set [services.hydra.package](options.html#opt-services.hydra.package) to pkgs.hydra explicitly and make sure you know what you\'re doing! + pkgs.hydra has been removed to ensure a graceful database-migration using the dedicated package-attributes. If you still have pkgs.hydra defined in e.g. an overlay, an assertion error will be thrown. To circumvent this, you need to set [services.hydra.package](options.html#opt-services.hydra.package) to pkgs.hydra explicitly and make sure you know what you're doing! ::: - The TokuDB storage engine will be disabled in mariadb 10.5. It is recommended to switch to RocksDB. See also [TokuDB](https://mariadb.com/kb/en/tokudb/). @@ -478,9 +478,9 @@ When upgrading from a previous release, please be aware of the following incompa Depending on your setup, you need to incorporate one of the following changes in your setup to upgrade to 20.03: - - If you use `sqlite3` you don\'t need to do anything. + - If you use `sqlite3` you don't need to do anything. - - If you use `postgresql` on a different server, you don\'t need to change anything as well since this module was never designed to configure remote databases. + - If you use `postgresql` on a different server, you don't need to change anything as well since this module was never designed to configure remote databases. - If you use `postgresql` and configured your synapse initially on `19.09` or older, you simply need to enable postgresql-support explicitly: @@ -496,12 +496,12 @@ When upgrading from a previous release, please be aware of the following incompa - If you deploy a fresh matrix-synapse, you need to configure the database yourself (e.g. by using the [services.postgresql.initialScript](options.html#opt-services.postgresql.initialScript) option). An example for this can be found in the [documentation of the Matrix module](#module-services-matrix). -- If you initially deployed your matrix-synapse on `nixos-unstable` _after_ the `19.09`-release, your database is misconfigured due to a regression in NixOS. For now, matrix-synapse will startup with a warning, but it\'s recommended to reconfigure the database to set the values `LC_COLLATE` and `LC_CTYPE` to [`'C'`](https://www.postgresql.org/docs/12/locale.html). +- If you initially deployed your matrix-synapse on `nixos-unstable` _after_ the `19.09`-release, your database is misconfigured due to a regression in NixOS. For now, matrix-synapse will startup with a warning, but it's recommended to reconfigure the database to set the values `LC_COLLATE` and `LC_CTYPE` to [`'C'`](https://www.postgresql.org/docs/12/locale.html). -- The [systemd.network.links](options.html#opt-systemd.network.links) option is now respected even when [systemd-networkd](options.html#opt-systemd.network.enable) is disabled. This mirrors the behaviour of systemd - It\'s udev that parses `.link` files, not `systemd-networkd`. +- The [systemd.network.links](options.html#opt-systemd.network.links) option is now respected even when [systemd-networkd](options.html#opt-systemd.network.enable) is disabled. This mirrors the behaviour of systemd - It's udev that parses `.link` files, not `systemd-networkd`. - mongodb has been updated to version `3.4.24`. ::: {.warning} - Please note that mongodb has been relicensed under their own [` sspl`](https://www.mongodb.com/licensing/server-side-public-license/faq)-license. Since it\'s not entirely free and not OSI-approved, it\'s listed as non-free. This means that Hydra doesn\'t provide prebuilt mongodb-packages and needs to be built locally. + Please note that mongodb has been relicensed under their own [` sspl`](https://www.mongodb.com/licensing/server-side-public-license/faq)-license. Since it's not entirely free and not OSI-approved, it's listed as non-free. This means that Hydra doesn't provide prebuilt mongodb-packages and needs to be built locally. ::: diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2009.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2009.section.md index 79be2a56a5..6995ef1d40 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2009.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2009.section.md @@ -218,7 +218,7 @@ In addition to 1119 new, 118 updated, and 476 removed options; 61 new modules we When upgrading from a previous release, please be aware of the following incompatible changes: -- MariaDB has been updated to 10.4, MariaDB Galera to 26.4. Before you upgrade, it would be best to take a backup of your database. For MariaDB Galera Cluster, see [Upgrading from MariaDB 10.3 to MariaDB 10.4 with Galera Cluster](https://mariadb.com/kb/en/upgrading-from-mariadb-103-to-mariadb-104-with-galera-cluster/) instead. Before doing the upgrade read [Incompatible Changes Between 10.3 and 10.4](https://mariadb.com/kb/en/upgrading-from-mariadb-103-to-mariadb-104/#incompatible-changes-between-103-and-104). After the upgrade you will need to run `mysql_upgrade`. MariaDB 10.4 introduces a number of changes to the authentication process, intended to make things easier and more intuitive. See [Authentication from MariaDB 10.4](https://mariadb.com/kb/en/authentication-from-mariadb-104/). unix_socket auth plugin does not use a password, and uses the connecting user\'s UID instead. When a new MariaDB data directory is initialized, two MariaDB users are created and can be used with new unix_socket auth plugin, as well as traditional mysql_native_password plugin: root\@localhost and mysql\@localhost. To actually use the traditional mysql_native_password plugin method, one must run the following: +- MariaDB has been updated to 10.4, MariaDB Galera to 26.4. Before you upgrade, it would be best to take a backup of your database. For MariaDB Galera Cluster, see [Upgrading from MariaDB 10.3 to MariaDB 10.4 with Galera Cluster](https://mariadb.com/kb/en/upgrading-from-mariadb-103-to-mariadb-104-with-galera-cluster/) instead. Before doing the upgrade read [Incompatible Changes Between 10.3 and 10.4](https://mariadb.com/kb/en/upgrading-from-mariadb-103-to-mariadb-104/#incompatible-changes-between-103-and-104). After the upgrade you will need to run `mysql_upgrade`. MariaDB 10.4 introduces a number of changes to the authentication process, intended to make things easier and more intuitive. See [Authentication from MariaDB 10.4](https://mariadb.com/kb/en/authentication-from-mariadb-104/). unix_socket auth plugin does not use a password, and uses the connecting user's UID instead. When a new MariaDB data directory is initialized, two MariaDB users are created and can be used with new unix_socket auth plugin, as well as traditional mysql_native_password plugin: root\@localhost and mysql\@localhost. To actually use the traditional mysql_native_password plugin method, one must run the following: ```nix { @@ -284,7 +284,7 @@ When upgrading from a previous release, please be aware of the following incompa - The [matrix-synapse](options.html#opt-services.matrix-synapse.enable) module no longer includes optional dependencies by default, they have to be added through the [plugins](options.html#opt-services.matrix-synapse.plugins) option. -- `buildGoModule` now internally creates a vendor directory in the source tree for downloaded modules instead of using go\'s [module proxy protocol](https://golang.org/cmd/go/#hdr-Module_proxy_protocol). This storage format is simpler and therefore less likely to break with future versions of go. As a result `buildGoModule` switched from `modSha256` to the `vendorSha256` attribute to pin fetched version data. +- `buildGoModule` now internally creates a vendor directory in the source tree for downloaded modules instead of using go's [module proxy protocol](https://golang.org/cmd/go/#hdr-Module_proxy_protocol). This storage format is simpler and therefore less likely to break with future versions of go. As a result `buildGoModule` switched from `modSha256` to the `vendorSha256` attribute to pin fetched version data. - Grafana is now built without support for phantomjs by default. Phantomjs support has been [deprecated in Grafana](https://grafana.com/docs/grafana/latest/guides/whats-new-in-v6-4/) and the phantomjs project is [currently unmaintained](https://github.com/ariya/phantomjs/issues/15344#issue-302015362). It can still be enabled by providing `phantomJsSupport = true` to the package instantiation: @@ -306,9 +306,9 @@ When upgrading from a previous release, please be aware of the following incompa - The initrd SSH support now uses OpenSSH rather than Dropbear to allow the use of Ed25519 keys and other OpenSSH-specific functionality. Host keys must now be in the OpenSSH format, and at least one pre-generated key must be specified. - If you used the `boot.initrd.network.ssh.host*Key` options, you\'ll get an error explaining how to convert your host keys and migrate to the new `boot.initrd.network.ssh.hostKeys` option. Otherwise, if you don\'t have any host keys set, you\'ll need to generate some; see the `hostKeys` option documentation for instructions. + If you used the `boot.initrd.network.ssh.host*Key` options, you'll get an error explaining how to convert your host keys and migrate to the new `boot.initrd.network.ssh.hostKeys` option. Otherwise, if you don't have any host keys set, you'll need to generate some; see the `hostKeys` option documentation for instructions. -- Since this release there\'s an easy way to customize your PHP install to get a much smaller base PHP with only wanted extensions enabled. See the following snippet installing a smaller PHP with the extensions `imagick`, `opcache`, `pdo` and `pdo_mysql` loaded: +- Since this release there's an easy way to customize your PHP install to get a much smaller base PHP with only wanted extensions enabled. See the following snippet installing a smaller PHP with the extensions `imagick`, `opcache`, `pdo` and `pdo_mysql` loaded: ```nix { @@ -325,7 +325,7 @@ When upgrading from a previous release, please be aware of the following incompa } ``` - The default `php` attribute hasn\'t lost any extensions. The `opcache` extension has been added. All upstream PHP extensions are available under php.extensions.\. + The default `php` attribute hasn't lost any extensions. The `opcache` extension has been added. All upstream PHP extensions are available under php.extensions.\. All PHP `config` flags have been removed for the following reasons: @@ -418,9 +418,9 @@ When upgrading from a previous release, please be aware of the following incompa The default value for [services.httpd.mpm](options.html#opt-services.httpd.mpm) has been changed from `prefork` to `event`. Along with this change the default value for [services.httpd.virtualHosts.\.http2](options.html#opt-services.httpd.virtualHosts) has been set to `true`. -- The `systemd-networkd` option `systemd.network.networks..dhcp.CriticalConnection` has been removed following upstream systemd\'s deprecation of the same. It is recommended to use `systemd.network.networks..networkConfig.KeepConfiguration` instead. See systemd.network 5 for details. +- The `systemd-networkd` option `systemd.network.networks..dhcp.CriticalConnection` has been removed following upstream systemd's deprecation of the same. It is recommended to use `systemd.network.networks..networkConfig.KeepConfiguration` instead. See systemd.network 5 for details. -- The `systemd-networkd` option `systemd.network.networks._name_.dhcpConfig` has been renamed to [systemd.network.networks._name_.dhcpV4Config](options.html#opt-systemd.network.networks._name_.dhcpV4Config) following upstream systemd\'s documentation change. See systemd.network 5 for details. +- The `systemd-networkd` option `systemd.network.networks._name_.dhcpConfig` has been renamed to [systemd.network.networks._name_.dhcpV4Config](options.html#opt-systemd.network.networks._name_.dhcpV4Config) following upstream systemd's documentation change. See systemd.network 5 for details. - In the `picom` module, several options that accepted floating point numbers encoded as strings (for example [services.picom.activeOpacity](options.html#opt-services.picom.activeOpacity)) have been changed to the (relatively) new native `float` type. To migrate your configuration simply remove the quotes around the numbers. @@ -440,7 +440,7 @@ When upgrading from a previous release, please be aware of the following incompa - The GRUB specific option `boot.loader.grub.extraInitrd` has been replaced with the generic option `boot.initrd.secrets`. This option creates a secondary initrd from the specified files, rather than using a manually created initrd file. Due to an existing bug with `boot.loader.grub.extraInitrd`, it is not possible to directly boot an older generation that used that option. It is still possible to rollback to that generation if the required initrd file has not been deleted. -- The [DNSChain](https://github.com/okTurtles/dnschain) package and NixOS module have been removed from Nixpkgs as the software is unmaintained and can\'t be built. For more information see issue [\#89205](https://github.com/NixOS/nixpkgs/issues/89205). +- The [DNSChain](https://github.com/okTurtles/dnschain) package and NixOS module have been removed from Nixpkgs as the software is unmaintained and can't be built. For more information see issue [\#89205](https://github.com/NixOS/nixpkgs/issues/89205). - In the `resilio` module, [services.resilio.httpListenAddr](options.html#opt-services.resilio.httpListenAddr) has been changed to listen to `[::1]` instead of `0.0.0.0`. @@ -456,7 +456,7 @@ When upgrading from a previous release, please be aware of the following incompa - Update servers first, then clients. -- Radicale\'s default package has changed from 2.x to 3.x. An upgrade checklist can be found [here](https://github.com/Kozea/Radicale/blob/3.0.x/NEWS.md#upgrade-checklist). You can use the newer version in the NixOS service by setting the `package` to `radicale3`, which is done automatically if `stateVersion` is 20.09 or higher. +- Radicale's default package has changed from 2.x to 3.x. An upgrade checklist can be found [here](https://github.com/Kozea/Radicale/blob/3.0.x/NEWS.md#upgrade-checklist). You can use the newer version in the NixOS service by setting the `package` to `radicale3`, which is done automatically if `stateVersion` is 20.09 or higher. - `udpt` experienced a complete rewrite from C++ to rust. The configuration format changed from ini to toml. The new configuration documentation can be found at [the official website](https://naim94a.github.io/udpt/config.html) and example configuration is packaged in `${udpt}/share/udpt/udpt.toml`. @@ -522,7 +522,7 @@ When upgrading from a previous release, please be aware of the following incompa } ``` - The base package has also been upgraded to the 2020-07-29 \"Hogfather\" release. Plugins might be incompatible or require upgrading. + The base package has also been upgraded to the 2020-07-29 "Hogfather" release. Plugins might be incompatible or require upgrading. - The [services.postgresql.dataDir](options.html#opt-services.postgresql.dataDir) option is now set to `"/var/lib/postgresql/${cfg.package.psqlSchema}"` regardless of your [system.stateVersion](options.html#opt-system.stateVersion). Users with an existing postgresql install that have a [system.stateVersion](options.html#opt-system.stateVersion) of `17.03` or below should double check what the value of their [services.postgresql.dataDir](options.html#opt-services.postgresql.dataDir) option is (`/var/db/postgresql`) and then explicitly set this value to maintain compatibility: @@ -552,17 +552,17 @@ When upgrading from a previous release, please be aware of the following incompa - The [jellyfin](options.html#opt-services.jellyfin.enable) module will use and stay on the Jellyfin version `10.5.5` if `stateVersion` is lower than `20.09`. This is because significant changes were made to the database schema, and it is highly recommended to backup your instance before upgrading. After making your backup, you can upgrade to the latest version either by setting your `stateVersion` to `20.09` or higher, or set the `services.jellyfin.package` to `pkgs.jellyfin`. If you do not wish to upgrade Jellyfin, but want to change your `stateVersion`, you can set the value of `services.jellyfin.package` to `pkgs.jellyfin_10_5`. -- The `security.rngd` service is now disabled by default. This choice was made because there\'s krngd in the linux kernel space making it (for most usecases) functionally redundent. +- The `security.rngd` service is now disabled by default. This choice was made because there's krngd in the linux kernel space making it (for most usecases) functionally redundent. - The `hardware.nvidia.optimus_prime.enable` service has been renamed to `hardware.nvidia.prime.sync.enable` and has many new enhancements. Related nvidia prime settings may have also changed. - The package nextcloud17 has been removed and nextcloud18 was marked as insecure since both of them will [ will be EOL (end of life) within the lifetime of 20.09](https://docs.nextcloud.com/server/19/admin_manual/release_schedule.html). - It\'s necessary to upgrade to nextcloud19: + It's necessary to upgrade to nextcloud19: - - From nextcloud17, you have to upgrade to nextcloud18 first as Nextcloud doesn\'t allow going multiple major revisions forward in a single upgrade. This is possible by setting [services.nextcloud.package](options.html#opt-services.nextcloud.package) to nextcloud18. + - From nextcloud17, you have to upgrade to nextcloud18 first as Nextcloud doesn't allow going multiple major revisions forward in a single upgrade. This is possible by setting [services.nextcloud.package](options.html#opt-services.nextcloud.package) to nextcloud18. - - From nextcloud18, it\'s possible to directly upgrade to nextcloud19 by setting [services.nextcloud.package](options.html#opt-services.nextcloud.package) to nextcloud19. + - From nextcloud18, it's possible to directly upgrade to nextcloud19 by setting [services.nextcloud.package](options.html#opt-services.nextcloud.package) to nextcloud19. - The GNOME desktop manager no longer default installs gnome3.epiphany. It was chosen to do this as it has a usability breaking issue (see issue [\#98819](https://github.com/NixOS/nixpkgs/issues/98819)) that makes it unsuitable to be a default app. @@ -578,7 +578,7 @@ When upgrading from a previous release, please be aware of the following incompa - `services.journald.rateLimitBurst` was updated from `1000` to `10000` to follow the new upstream systemd default. -- The notmuch package moves its emacs-related binaries and emacs lisp files to a separate output. They\'re not part of the default `out` output anymore - if you relied on the `notmuch-emacs-mua` binary or the emacs lisp files, access them via the `notmuch.emacs` output. +- The notmuch package moves its emacs-related binaries and emacs lisp files to a separate output. They're not part of the default `out` output anymore - if you relied on the `notmuch-emacs-mua` binary or the emacs lisp files, access them via the `notmuch.emacs` output. - Device tree overlay support was improved in [\#79370](https://github.com/NixOS/nixpkgs/pull/79370) and now uses [hardware.deviceTree.kernelPackage](options.html#opt-hardware.deviceTree.kernelPackage) instead of `hardware.deviceTree.base`. [hardware.deviceTree.overlays](options.html#opt-hardware.deviceTree.overlays) configuration was extended to support `.dts` files with symbols. Device trees can now be filtered by setting [hardware.deviceTree.filter](options.html#opt-hardware.deviceTree.filter) option. @@ -590,7 +590,7 @@ When upgrading from a previous release, please be aware of the following incompa Please note that Rust packages utilizing a custom build/install procedure (e.g. by using a `Makefile`) or test suites that rely on the structure of the `target/` directory may break due to those assumptions. For further information, please read the Rust section in the Nixpkgs manual. -- The cc- and binutils-wrapper\'s \"infix salt\" and `_BUILD_` and `_TARGET_` user infixes have been replaced with with a \"suffix salt\" and suffixes and `_FOR_BUILD` and `_FOR_TARGET`. This matches the autotools convention for env vars which standard for these things, making interfacing with other tools easier. +- The cc- and binutils-wrapper's "infix salt" and `_BUILD_` and `_TARGET_` user infixes have been replaced with with a "suffix salt" and suffixes and `_FOR_BUILD` and `_FOR_TARGET`. This matches the autotools convention for env vars which standard for these things, making interfacing with other tools easier. - Additional Git documentation (HTML and text files) is now available via the `git-doc` package. @@ -598,7 +598,7 @@ When upgrading from a previous release, please be aware of the following incompa - The installer now enables sshd by default. This improves installation on headless machines especially ARM single-board-computer. To login through ssh, either a password or an ssh key must be set for the root user or the nixos user. -- The scripted networking system now uses `.link` files in `/etc/systemd/network` to configure mac address and link MTU, instead of the sometimes buggy `network-link-*` units, which have been removed. Bringing the interface up has been moved to the beginning of the `network-addresses-*` unit. Note this doesn\'t require `systemd-networkd` - it\'s udev that parses `.link` files. Extra care needs to be taken in the presence of [legacy udev rules](https://wiki.debian.org/NetworkInterfaceNames#THE_.22PERSISTENT_NAMES.22_SCHEME) to rename interfaces, as MAC Address and MTU defined in these options can only match on the original link name. In such cases, you most likely want to create a `10-*.link` file through [systemd.network.links](options.html#opt-systemd.network.links) and set both name and MAC Address / MTU there. +- The scripted networking system now uses `.link` files in `/etc/systemd/network` to configure mac address and link MTU, instead of the sometimes buggy `network-link-*` units, which have been removed. Bringing the interface up has been moved to the beginning of the `network-addresses-*` unit. Note this doesn't require `systemd-networkd` - it's udev that parses `.link` files. Extra care needs to be taken in the presence of [legacy udev rules](https://wiki.debian.org/NetworkInterfaceNames#THE_.22PERSISTENT_NAMES.22_SCHEME) to rename interfaces, as MAC Address and MTU defined in these options can only match on the original link name. In such cases, you most likely want to create a `10-*.link` file through [systemd.network.links](options.html#opt-systemd.network.links) and set both name and MAC Address / MTU there. - Grafana received a major update to version 7.x. A plugin is now needed for image rendering support, and plugins must now be signed by default. More information can be found [in the Grafana documentation](https://grafana.com/docs/grafana/latest/installation/upgrading/#upgrading-to-v7-0). @@ -624,15 +624,15 @@ When upgrading from a previous release, please be aware of the following incompa to get the previous behavior of listening on all network interfaces. -- With this release `systemd-networkd` (when enabled through [networking.useNetworkd](options.html#opt-networking.useNetworkd)) has it\'s netlink socket created through a `systemd.socket` unit. This gives us control over socket buffer sizes and other parameters. For larger setups where networkd has to create a lot of (virtual) devices the default buffer size (currently 128MB) is not enough. +- With this release `systemd-networkd` (when enabled through [networking.useNetworkd](options.html#opt-networking.useNetworkd)) has it's netlink socket created through a `systemd.socket` unit. This gives us control over socket buffer sizes and other parameters. For larger setups where networkd has to create a lot of (virtual) devices the default buffer size (currently 128MB) is not enough. On a machine with \>100 virtual interfaces (e.g., wireguard tunnels, VLANs, ...), that all have to be brought up during system startup, the receive buffer size will spike for a brief period. Eventually some of the message will be dropped since there is not enough (permitted) buffer space available. By having `systemd-networkd` start with a netlink socket created by `systemd` we can configure the `ReceiveBufferSize=` parameter in the socket options (i.e. `systemd.sockets.systemd-networkd.socketOptions.ReceiveBufferSize`) without recompiling `systemd-networkd`. - Since the actual memory requirements depend on hardware, timing, exact configurations etc. it isn\'t currently possible to infer a good default from within the NixOS module system. Administrators are advised to monitor the logs of `systemd-networkd` for `rtnl: kernel receive buffer overrun` spam and increase the memory limit as they see fit. + Since the actual memory requirements depend on hardware, timing, exact configurations etc. it isn't currently possible to infer a good default from within the NixOS module system. Administrators are advised to monitor the logs of `systemd-networkd` for `rtnl: kernel receive buffer overrun` spam and increase the memory limit as they see fit. - Note: Increasing the `ReceiveBufferSize=` doesn\'t allocate any memory. It just increases the upper bound on the kernel side. The memory allocation depends on the amount of messages that are queued on the kernel side of the netlink socket. + Note: Increasing the `ReceiveBufferSize=` doesn't allocate any memory. It just increases the upper bound on the kernel side. The memory allocation depends on the amount of messages that are queued on the kernel side of the netlink socket. - Specifying [mailboxes](options.html#opt-services.dovecot2.mailboxes) in the dovecot2 module as a list is deprecated and will break eval in 21.05. Instead, an attribute-set should be specified where the `name` should be the key of the attribute. @@ -662,7 +662,7 @@ When upgrading from a previous release, please be aware of the following incompa - nextcloud has been updated to [v19](https://nextcloud.com/blog/nextcloud-hub-brings-productivity-to-home-office/). - If you have an existing installation, please make sure that you\'re on nextcloud18 before upgrading to nextcloud19 since Nextcloud doesn\'t support upgrades across multiple major versions. + If you have an existing installation, please make sure that you're on nextcloud18 before upgrading to nextcloud19 since Nextcloud doesn't support upgrades across multiple major versions. - The `nixos-run-vms` script now deletes the previous run machines states on test startup. You can use the `--keep-vm-state` flag to match the previous behaviour and keep the same VM state between different test runs. diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2105.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2105.section.md index 359f2e5b2e..6244d79e7e 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2105.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2105.section.md @@ -68,9 +68,9 @@ When upgrading from a previous release, please be aware of the following incompa - If the `services.dbus` module is enabled, then the user D-Bus session is now always socket activated. The associated options `services.dbus.socketActivated` and `services.xserver.startDbusSession` have therefore been removed and you will receive a warning if they are present in your configuration. This change makes the user D-Bus session available also for non-graphical logins. -- The `networking.wireless.iwd` module now installs the upstream-provided 80-iwd.link file, which sets the NamePolicy= for all wlan devices to \"keep kernel\", to avoid race conditions between iwd and networkd. If you don\'t want this, you can set `systemd.network.links."80-iwd" = lib.mkForce {}`. +- The `networking.wireless.iwd` module now installs the upstream-provided 80-iwd.link file, which sets the NamePolicy= for all wlan devices to "keep kernel", to avoid race conditions between iwd and networkd. If you don't want this, you can set `systemd.network.links."80-iwd" = lib.mkForce {}`. -- `rubyMinimal` was removed due to being unused and unusable. The default ruby interpreter includes JIT support, which makes it reference it\'s compiler. Since JIT support is probably needed by some Gems, it was decided to enable this feature with all cc references by default, and allow to build a Ruby derivation without references to cc, by setting `jitSupport = false;` in an overlay. See [\#90151](https://github.com/NixOS/nixpkgs/pull/90151) for more info. +- `rubyMinimal` was removed due to being unused and unusable. The default ruby interpreter includes JIT support, which makes it reference it's compiler. Since JIT support is probably needed by some Gems, it was decided to enable this feature with all cc references by default, and allow to build a Ruby derivation without references to cc, by setting `jitSupport = false;` in an overlay. See [\#90151](https://github.com/NixOS/nixpkgs/pull/90151) for more info. - Setting `services.openssh.authorizedKeysFiles` now also affects which keys `security.pam.enableSSHAgentAuth` will use. WARNING: If you are using these options in combination do make sure that any key paths you use are present in `services.openssh.authorizedKeysFiles`! @@ -130,7 +130,7 @@ When upgrading from a previous release, please be aware of the following incompa - `vim` and `neovim` switched to Python 3, dropping all Python 2 support. -- [networking.wireguard.interfaces.\.generatePrivateKeyFile](options.html#opt-networking.wireguard.interfaces), which is off by default, had a `chmod` race condition fixed. As an aside, the parent directory\'s permissions were widened, and the key files were made owner-writable. This only affects newly created keys. However, if the exact permissions are important for your setup, read [\#121294](https://github.com/NixOS/nixpkgs/pull/121294). +- [networking.wireguard.interfaces.\.generatePrivateKeyFile](options.html#opt-networking.wireguard.interfaces), which is off by default, had a `chmod` race condition fixed. As an aside, the parent directory's permissions were widened, and the key files were made owner-writable. This only affects newly created keys. However, if the exact permissions are important for your setup, read [\#121294](https://github.com/NixOS/nixpkgs/pull/121294). - [boot.zfs.forceImportAll](options.html#opt-boot.zfs.forceImportAll) previously did nothing, but has been fixed. However its default has been changed to `false` to preserve the existing default behaviour. If you have this explicitly set to `true`, please note that your non-root pools will now be forcibly imported. @@ -157,12 +157,12 @@ When upgrading from a previous release, please be aware of the following incompa - Amazon EC2 and OpenStack Compute (nova) images now re-fetch instance meta data and user data from the instance metadata service (IMDS) on each boot. For example: stopping an EC2 instance, changing its user data, and restarting the instance will now cause it to fetch and apply the new user data. ::: {.warning} - Specifically, `/etc/ec2-metadata` is re-populated on each boot. Some NixOS scripts that read from this directory are guarded to only run if the files they want to manipulate do not already exist, and so will not re-apply their changes if the IMDS response changes. Examples: `root`\'s SSH key is only added if `/root/.ssh/authorized_keys` does not exist, and SSH host keys are only set from user data if they do not exist in `/etc/ssh`. + Specifically, `/etc/ec2-metadata` is re-populated on each boot. Some NixOS scripts that read from this directory are guarded to only run if the files they want to manipulate do not already exist, and so will not re-apply their changes if the IMDS response changes. Examples: `root`'s SSH key is only added if `/root/.ssh/authorized_keys` does not exist, and SSH host keys are only set from user data if they do not exist in `/etc/ssh`. ::: - The `rspamd` services is now sandboxed. It is run as a dynamic user instead of root, so secrets and other files may have to be moved or their permissions may have to be fixed. The sockets are now located in `/run/rspamd` instead of `/run`. -- Enabling the Tor client no longer silently also enables and configures Privoxy, and the `services.tor.client.privoxy.enable` option has been removed. To enable Privoxy, and to configure it to use Tor\'s faster port, use the following configuration: +- Enabling the Tor client no longer silently also enables and configures Privoxy, and the `services.tor.client.privoxy.enable` option has been removed. To enable Privoxy, and to configure it to use Tor's faster port, use the following configuration: ```nix { @@ -181,7 +181,7 @@ When upgrading from a previous release, please be aware of the following incompa - The fish-foreign-env package has been replaced with fishPlugins.foreign-env, in which the fish functions have been relocated to the `vendor_functions.d` directory to be loaded automatically. -- The prometheus json exporter is now managed by the prometheus community. Together with additional features some backwards incompatibilities were introduced. Most importantly the exporter no longer accepts a fixed command-line parameter to specify the URL of the endpoint serving JSON. It now expects this URL to be passed as an URL parameter, when scraping the exporter\'s `/probe` endpoint. In the prometheus scrape configuration the scrape target might look like this: +- The prometheus json exporter is now managed by the prometheus community. Together with additional features some backwards incompatibilities were introduced. Most importantly the exporter no longer accepts a fixed command-line parameter to specify the URL of the endpoint serving JSON. It now expects this URL to be passed as an URL parameter, when scraping the exporter's `/probe` endpoint. In the prometheus scrape configuration the scrape target might look like this: ``` http://some.json-exporter.host:7979/probe?target=https://example.com/some/json/endpoint @@ -230,7 +230,7 @@ When upgrading from a previous release, please be aware of the following incompa Additionally, packages flashplayer and hal-flash were removed along with the `services.flashpolicyd` module. -- The `security.rngd` module has been removed. It was disabled by default in 20.09 as it was functionally redundant with krngd in the linux kernel. It is not necessary for any device that the kernel recognises as an hardware RNG, as it will automatically run the krngd task to periodically collect random data from the device and mix it into the kernel\'s RNG. +- The `security.rngd` module has been removed. It was disabled by default in 20.09 as it was functionally redundant with krngd in the linux kernel. It is not necessary for any device that the kernel recognises as an hardware RNG, as it will automatically run the krngd task to periodically collect random data from the device and mix it into the kernel's RNG. The default SMTP port for GitLab has been changed to `25` from its previous default of `465`. If you depended on this default, you should now set the [services.gitlab.smtp.port](options.html#opt-services.gitlab.smtp.port) option. @@ -272,11 +272,11 @@ When upgrading from a previous release, please be aware of the following incompa - `environment.defaultPackages` now includes the nano package. If pkgs.nano is not added to the list, make sure another editor is installed and the `EDITOR` environment variable is set to it. Environment variables can be set using `environment.variables`. -- `services.minio.dataDir` changed type to a list of paths, required for specifiyng multiple data directories for using with erasure coding. Currently, the service doesn\'t enforce nor checks the correct number of paths to correspond to minio requirements. +- `services.minio.dataDir` changed type to a list of paths, required for specifiyng multiple data directories for using with erasure coding. Currently, the service doesn't enforce nor checks the correct number of paths to correspond to minio requirements. - All CUDA toolkit versions prior to CUDA 10 have been removed. -- The kbdKeymaps package was removed since dvp and neo are now included in kbd. If you want to use the Programmer Dvorak Keyboard Layout, you have to use `dvorak-programmer` in `console.keyMap` now instead of `dvp`. In `services.xserver.xkbVariant` it\'s still `dvp`. +- The kbdKeymaps package was removed since dvp and neo are now included in kbd. If you want to use the Programmer Dvorak Keyboard Layout, you have to use `dvorak-programmer` in `console.keyMap` now instead of `dvp`. In `services.xserver.xkbVariant` it's still `dvp`. - The babeld service is now being run as an unprivileged user. To achieve that the module configures `skip-kernel-setup true` and takes care of setting forwarding and rp_filter sysctls by itself as well as for each interface in `services.babeld.interfaces`. @@ -286,7 +286,7 @@ When upgrading from a previous release, please be aware of the following incompa - Instead of determining `services.radicale.package` automatically based on `system.stateVersion`, the latest version is always used because old versions are not officially supported. - Furthermore, Radicale\'s systemd unit was hardened which might break some deployments. In particular, a non-default `filesystem_folder` has to be added to `systemd.services.radicale.serviceConfig.ReadWritePaths` if the deprecated `services.radicale.config` is used. + Furthermore, Radicale's systemd unit was hardened which might break some deployments. In particular, a non-default `filesystem_folder` has to be added to `systemd.services.radicale.serviceConfig.ReadWritePaths` if the deprecated `services.radicale.config` is used. - In the `security.acme` module, use of `--reuse-key` parameter for Lego has been removed. It was introduced for HKPK, but this security feature is now deprecated. It is a better security practice to rotate key pairs instead of always keeping the same. If you need to keep this parameter, you can add it back using `extraLegoRenewFlags` as an option for the appropriate certificate. @@ -294,13 +294,13 @@ When upgrading from a previous release, please be aware of the following incompa - `stdenv.lib` has been deprecated and will break eval in 21.11. Please use `pkgs.lib` instead. See [\#108938](https://github.com/NixOS/nixpkgs/issues/108938) for details. -- [GNURadio](https://www.gnuradio.org/) has a `pkgs` attribute set, and there\'s a `gnuradio.callPackage` function that extends `pkgs` with a `mkDerivation`, and a `mkDerivationWith`, like Qt5. Now all `gnuradio.pkgs` are defined with `gnuradio.callPackage` and some packages that depend on gnuradio are defined with this as well. +- [GNURadio](https://www.gnuradio.org/) has a `pkgs` attribute set, and there's a `gnuradio.callPackage` function that extends `pkgs` with a `mkDerivation`, and a `mkDerivationWith`, like Qt5. Now all `gnuradio.pkgs` are defined with `gnuradio.callPackage` and some packages that depend on gnuradio are defined with this as well. - [Privoxy](https://www.privoxy.org/) has been updated to version 3.0.32 (See [announcement](https://lists.privoxy.org/pipermail/privoxy-announce/2021-February/000007.html)). Compared to the previous release, Privoxy has gained support for HTTPS inspection (still experimental), Brotli decompression, several new filters and lots of bug fixes, including security ones. In addition, the package is now built with compression and external filters support, which were previously disabled. Regarding the NixOS module, new options for HTTPS inspection have been added and `services.privoxy.extraConfig` has been replaced by the new [services.privoxy.settings](options.html#opt-services.privoxy.settings) (See [RFC 0042](https://github.com/NixOS/rfcs/blob/master/rfcs/0042-config-option.md) for the motivation). -- [Kodi](https://kodi.tv/) has been updated to version 19.1 \"Matrix\". See the [announcement](https://kodi.tv/article/kodi-19-0-matrix-release) for further details. +- [Kodi](https://kodi.tv/) has been updated to version 19.1 "Matrix". See the [announcement](https://kodi.tv/article/kodi-19-0-matrix-release) for further details. - The `services.packagekit.backend` option has been removed as it only supported a single setting which would always be the default. Instead new [RFC 0042](https://github.com/NixOS/rfcs/blob/master/rfcs/0042-config-option.md) compliant [services.packagekit.settings](options.html#opt-services.packagekit.settings) and [services.packagekit.vendorSettings](options.html#opt-services.packagekit.vendorSettings) options have been introduced. @@ -316,13 +316,13 @@ When upgrading from a previous release, please be aware of the following incompa If this option is disabled, default MTA config becomes not set and you should set the options in `services.mailman.settings.mta` according to the desired configuration as described in [Mailman documentation](https://mailman.readthedocs.io/en/latest/src/mailman/docs/mta.html). -- The default-version of `nextcloud` is nextcloud21. Please note that it\'s _not_ possible to upgrade `nextcloud` across multiple major versions! This means that it\'s e.g. not possible to upgrade from nextcloud18 to nextcloud20 in a single deploy and most `20.09` users will have to upgrade to nextcloud20 first. +- The default-version of `nextcloud` is nextcloud21. Please note that it's _not_ possible to upgrade `nextcloud` across multiple major versions! This means that it's e.g. not possible to upgrade from nextcloud18 to nextcloud20 in a single deploy and most `20.09` users will have to upgrade to nextcloud20 first. The package can be manually upgraded by setting [services.nextcloud.package](options.html#opt-services.nextcloud.package) to nextcloud21. - The setting [services.redis.bind](options.html#opt-services.redis.bind) defaults to `127.0.0.1` now, making Redis listen on the loopback interface only, and not all public network interfaces. -- NixOS now emits a deprecation warning if systemd\'s `StartLimitInterval` setting is used in a `serviceConfig` section instead of in a `unitConfig`; that setting is deprecated and now undocumented for the service section by systemd upstream, but still effective and somewhat buggy there, which can be confusing. See [\#45785](https://github.com/NixOS/nixpkgs/issues/45785) for details. +- NixOS now emits a deprecation warning if systemd's `StartLimitInterval` setting is used in a `serviceConfig` section instead of in a `unitConfig`; that setting is deprecated and now undocumented for the service section by systemd upstream, but still effective and somewhat buggy there, which can be confusing. See [\#45785](https://github.com/NixOS/nixpkgs/issues/45785) for details. All services should use [systemd.services._name_.startLimitIntervalSec](options.html#opt-systemd.services._name_.startLimitIntervalSec) or `StartLimitIntervalSec` in [systemd.services._name_.unitConfig](options.html#opt-systemd.services._name_.unitConfig) instead. @@ -357,7 +357,7 @@ When upgrading from a previous release, please be aware of the following incompa `services.unbound.forwardAddresses` and `services.unbound.allowedAccess` have also been changed to use the new settings interface. You can follow the instructions when executing `nixos-rebuild` to upgrade your configuration to use the new interface. -- The `services.dnscrypt-proxy2` module now takes the upstream\'s example configuration and updates it with the user\'s settings. An option has been added to restore the old behaviour if you prefer to declare the configuration from scratch. +- The `services.dnscrypt-proxy2` module now takes the upstream's example configuration and updates it with the user's settings. An option has been added to restore the old behaviour if you prefer to declare the configuration from scratch. - NixOS now defaults to the unified cgroup hierarchy (cgroupsv2). See the [Fedora Article for 31](https://www.redhat.com/sysadmin/fedora-31-control-group-v2) for details on why this is desirable, and how it impacts containers. @@ -367,11 +367,11 @@ When upgrading from a previous release, please be aware of the following incompa - GNOME users may wish to delete their `~/.config/pulse` due to the changes to stream routing logic. See [PulseAudio bug 832](https://gitlab.freedesktop.org/pulseaudio/pulseaudio/-/issues/832) for more information. -- The zookeeper package does not provide `zooInspector.sh` anymore, as that \"contrib\" has been dropped from upstream releases. +- The zookeeper package does not provide `zooInspector.sh` anymore, as that "contrib" has been dropped from upstream releases. -- In the ACME module, the data used to build the hash for the account directory has changed to accomodate new features to reduce account rate limit issues. This will trigger new account creation on the first rebuild following this update. No issues are expected to arise from this, thanks to the new account creation handling. +- In the ACME module, the data used to build the hash for the account directory has changed to accommodate new features to reduce account rate limit issues. This will trigger new account creation on the first rebuild following this update. No issues are expected to arise from this, thanks to the new account creation handling. -- [users.users._name_.createHome](options.html#opt-users.users._name_.createHome) now always ensures home directory permissions to be `0700`. Permissions had previously been ignored for already existing home directories, possibly leaving them readable by others. The option\'s description was incorrect regarding ownership management and has been simplified greatly. +- [users.users._name_.createHome](options.html#opt-users.users._name_.createHome) now always ensures home directory permissions to be `0700`. Permissions had previously been ignored for already existing home directories, possibly leaving them readable by others. The option's description was incorrect regarding ownership management and has been simplified greatly. - When defining a new user, one of [users.users._name_.isNormalUser](options.html#opt-users.users._name_.isNormalUser) and [users.users._name_.isSystemUser](options.html#opt-users.users._name_.isSystemUser) is now required. This is to prevent accidentally giving a UID above 1000 to system users, which could have unexpected consequences, like running user activation scripts for system users. Note that users defined with an explicit UID below 500 are exempted from this check, as [users.users._name_.isSystemUser](options.html#opt-users.users._name_.isSystemUser) has no effect for those. diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2111.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2111.section.md index fc4b44957c..7272e92315 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2111.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2111.section.md @@ -235,7 +235,7 @@ In addition to numerous new and upgraded packages, this release has the followin - The `erigon` ethereum node has moved to a new database format in `2021-05-04`, and requires a full resync -- The `erigon` ethereum node has moved it's database location in `2021-08-03`, users upgrading must manually move their chaindata (see [release notes](https://github.com/ledgerwatch/erigon/releases/tag/v2021.08.03)). +- The `erigon` ethereum node has moved its database location in `2021-08-03`, users upgrading must manually move their chaindata (see [release notes](https://github.com/ledgerwatch/erigon/releases/tag/v2021.08.03)). - [users.users.<name>.group](options.html#opt-users.users._name_.group) no longer defaults to `nogroup`, which was insecure. Out-of-tree modules are likely to require adaptation: instead of ```nix diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2205.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2205.section.md index 217aa6056c..7cc0c308ee 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2205.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2205.section.md @@ -107,7 +107,7 @@ In addition to numerous new and upgraded packages, this release has the followin - [kanidm](https://kanidm.github.io/kanidm/stable/), an identity management server written in Rust. Available as [services.kanidm](#opt-services.kanidm.enableServer) -- [Maddy](https://maddy.email/), a free an open source mail server. Availabe as [services.maddy](#opt-services.maddy.enable). +- [Maddy](https://maddy.email/), a free an open source mail server. Available as [services.maddy](#opt-services.maddy.enable). - [matrix-conduit](https://conduit.rs/), a simple, fast and reliable chat server powered by matrix. Available as [services.matrix-conduit](option.html#opt-services.matrix-conduit.enable). @@ -562,7 +562,7 @@ In addition to numerous new and upgraded packages, this release has the followin - `pkgs._7zz` is now correctly licensed as LGPL3+ and BSD3 with optional unfree unRAR licensed code - The `vim.customize` function produced by `vimUtils.makeCustomizable` now has a slightly different interface: - * The wrapper now includes everything in the given Vim derivation if `name` is `"vim"` (the default). This makes the `wrapManual` argument obsolete, but this behavior can be overriden by setting the `standalone` argument. + * The wrapper now includes everything in the given Vim derivation if `name` is `"vim"` (the default). This makes the `wrapManual` argument obsolete, but this behavior can be overridden by setting the `standalone` argument. * All the executables present in the given derivation (or, in `standalone` mode, only the `*vim` ones) are wrapped. This makes the `wrapGui` argument obsolete. * The `vimExecutableName` and `gvimExecutableName` arguments were replaced by a single `executableName` argument in which the shell variable `$exe` can be used to refer to the wrapped executable's name. diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2211.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2211.section.md index cbede784f0..e92c776b33 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2211.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2211.section.md @@ -385,7 +385,7 @@ In addition to numerous new and upgraded packages, this release includes the fol - memtest86+ was updated from 5.00-coreboot-002 to 6.00-beta2. It is now the upstream version from https://www.memtest.org/, as coreboot's fork is no longer available. -- Option descriptions, examples, and defaults writting in DocBook are now deprecated. Using CommonMark is preferred and will become the default in a future release. +- Option descriptions, examples, and defaults writing in DocBook are now deprecated. Using CommonMark is preferred and will become the default in a future release. - The `documentation.nixos.options.allowDocBook` option was added to ease the transition to CommonMark option documentation. Setting this option to `false` causes an error for every option included in the manual that uses DocBook documentation; it defaults to `true` to preserve the previous behavior and will be removed once the transition to CommonMark is complete. diff --git a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2305.section.md b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2305.section.md index 7aff655f44..6301579016 100644 --- a/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2305.section.md +++ b/third_party/nixpkgs/nixos/doc/manual/release-notes/rl-2305.section.md @@ -14,12 +14,18 @@ In addition to numerous new and upgraded packages, this release has the followin +- [Akkoma](https://akkoma.social), an ActivityPub microblogging server. Available as [services.akkoma](options.html#opt-services.akkoma.enable). + - [blesh](https://github.com/akinomyoga/ble.sh), a line editor written in pure bash. Available as [programs.bash.blesh](#opt-programs.bash.blesh.enable). +- [cups-pdf-to-pdf](https://github.com/alexivkin/CUPS-PDF-to-PDF), a pdf-generating cups backend based on [cups-pdf](https://www.cups-pdf.de/). Available as [services.printing.cups-pdf](#opt-services.printing.cups-pdf.enable). + - [fzf](https://github.com/junegunn/fzf), a command line fuzzyfinder. Available as [programs.fzf](#opt-programs.fzf.fuzzyCompletion). - [atuin](https://github.com/ellie/atuin), a sync server for shell history. Available as [services.atuin](#opt-services.atuin.enable). +- [mmsd](https://gitlab.com/kop316/mmsd), a lower level daemon that transmits and recieves MMSes. Available as [services.mmsd](#opt-services.mmsd.enable). + - [v2rayA](https://v2raya.org), a Linux web GUI client of Project V which supports V2Ray, Xray, SS, SSR, Trojan and Pingtunnel. Available as [services.v2raya](options.html#opt-services.v2raya.enable). ## Backward Incompatibilities {#sec-release-23.05-incompatibilities} @@ -33,13 +39,17 @@ In addition to numerous new and upgraded packages, this release has the followin - The EC2 image module no longer fetches instance metadata in stage-1. This results in a significantly smaller initramfs, since network drivers no longer need to be included, and faster boots, since metadata fetching can happen in parallel with startup of other services. This breaks services which rely on metadata being present by the time stage-2 is entered. Anything which reads EC2 metadata from `/etc/ec2-metadata` should now have an `after` dependency on `fetch-ec2-metadata.service` +- `minio` removed support for its legacy filesystem backend in [RELEASE.2022-10-29T06-21-33Z](https://github.com/minio/minio/releases/tag/RELEASE.2022-10-29T06-21-33Z). This means if your storage was created with the old format, minio will no longer start. Unfortunately minio doesn't provide a an automatic migration, they only provide [instructions how to manually convert the node](https://min.io/docs/minio/windows/operations/install-deploy-manage/migrate-fs-gateway.html). To facilitate this migration we keep around the last version that still supports the old filesystem backend as `minio_legacy_fs`. Use it via `services.minio.package = minio_legacy_fs;` to export your data before switching to the new version. See the corresponding [issue](https://github.com/NixOS/nixpkgs/issues/199318) for more details. + - `services.sourcehut.dispatch` and the corresponding package (`sourcehut.dispatchsrht`) have been removed due to [upstream deprecation](https://sourcehut.org/blog/2022-08-01-dispatch-deprecation-plans/). -- The [services.snapserver.openFirewall](#opt-services.snapserver.openFirewall) module option default value has been changed from `true` to `false`. You will need to explicitely set this option to `true`, or configure your firewall. +- The [services.snapserver.openFirewall](#opt-services.snapserver.openFirewall) module option default value has been changed from `true` to `false`. You will need to explicitly set this option to `true`, or configure your firewall. -- The [services.tmate-ssh-server.openFirewall](#opt-services.tmate-ssh-server.openFirewall) module option default value has been changed from `true` to `false`. You will need to explicitely set this option to `true`, or configure your firewall. +- The [services.tmate-ssh-server.openFirewall](#opt-services.tmate-ssh-server.openFirewall) module option default value has been changed from `true` to `false`. You will need to explicitly set this option to `true`, or configure your firewall. -- The [services.unifi-video.openFirewall](#opt-services.unifi-video.openFirewall) module option default value has been changed from `true` to `false`. You will need to explicitely set this option to `true`, or configure your firewall. +- The [services.unifi-video.openFirewall](#opt-services.unifi-video.openFirewall) module option default value has been changed from `true` to `false`. You will need to explicitly set this option to `true`, or configure your firewall. + +- The Nginx module now validates the syntax of config files at build time. For more complex configurations (using `include` with out-of-store files notably) you may need to disable this check by setting [services.nginx.validateConfig](#opt-services.nginx.validateConfig) to `false`. - The EC2 image module previously detected and automatically mounted ext3-formatted instance store devices and partitions in stage-1 (initramfs), storing `/tmp` on the first discovered device. This behaviour, which only catered to very specific use cases and could not be disabled, has been removed. Users relying on this should provide their own implementation, and probably use ext4 and perform the mount in stage-2. @@ -55,10 +65,12 @@ In addition to numerous new and upgraded packages, this release has the followin -- `vim_configurable` has been renamed to `vim-full` to avoid confusion: `vim-full`'s build-time features are configurable, but both `vim` and `vim-full` are *customizable* (in the sense of user configuration, like vimrc). +- `vim_configurable` has been renamed to `vim-full` to avoid confusion: `vim-full`'s build-time features are configurable, but both `vim` and `vim-full` are _customizable_ (in the sense of user configuration, like vimrc). - The module for the application firewall `opensnitch` got the ability to configure rules. Available as [services.opensnitch.rules](#opt-services.opensnitch.rules) +- The module `usbmuxd` now has the ability to change the package used by the daemon. In case you're experiencing issues with `usbmuxd` you can try an alternative program like `usbmuxd2`. Available as [services.usbmuxd.package](#opt-services.usbmuxd.package) + - `services.mastodon` gained a tootctl wrapped named `mastodon-tootctl` similar to `nextcloud-occ` which can be executed from any user and switches to the configured mastodon user with sudo and sources the environment variables. - The `dnsmasq` service now takes configuration via the @@ -72,12 +84,35 @@ In addition to numerous new and upgraded packages, this release has the followin - `mastodon` now supports connection to a remote `PostgreSQL` database. +- `services.peertube` now requires you to specify the secret file `secrets.secretsFile`. It can be generated by running `openssl rand -hex 32`. + Before upgrading, read the release notes for PeerTube: + - [Release v5.0.0](https://github.com/Chocobozzz/PeerTube/releases/tag/v5.0.0) + + And backup your data. + +- The module `services.headscale` was refactored to be compliant with [RFC 0042](https://github.com/NixOS/rfcs/blob/master/rfcs/0042-config-option.md). To be precise, this means that the following things have changed: + + - Most settings has been migrated under [services.headscale.settings](#opt-services.headscale.settings) which is an attribute-set that + will be converted into headscale's YAML config format. This means that the configuration from + [headscale's example configuration](https://github.com/juanfont/headscale/blob/main/config-example.yaml) + can be directly written as attribute-set in Nix within this option. + +- `nixos/lib/make-disk-image.nix` can now mutate EFI variables, run user-provided EFI firmware or variable templates. This is now extensively documented in the NixOS manual. + - A new `virtualisation.rosetta` module was added to allow running `x86_64` binaries through [Rosetta](https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment) inside virtualised NixOS guests on Apple silicon. This feature works by default with the [UTM](https://docs.getutm.app/) virtualisation [package](https://search.nixos.org/packages?channel=unstable&show=utm&from=0&size=1&sort=relevance&type=packages&query=utm). - The new option `users.motdFile` allows configuring a Message Of The Day that can be updated dynamically. +- Enabling global redirect in `services.nginx.virtualHosts` now allows one to add exceptions with the `locations` option. + - Resilio sync secret keys can now be provided using a secrets file at runtime, preventing these secrets from ending up in the Nix store. +- The `firewall` and `nat` module now has a nftables based implementation. Enable `networking.nftables` to use it. + - The `services.fwupd` module now allows arbitrary daemon settings to be configured in a structured manner ([`services.fwupd.daemonSettings`](#opt-services.fwupd.daemonSettings)). - The `unifi-poller` package and corresponding NixOS module have been renamed to `unpoller` to match upstream. + +- The new option `services.tailscale.useRoutingFeatures` controls various settings for using Tailscale features like exit nodes and subnet routers. If you wish to use your machine as an exit node, you can set this setting to `server`, otherwise if you wish to use an exit node you can set this setting to `client`. The strict RPF warning has been removed as the RPF will be loosened automatically based on the value of this setting. + +- [Xastir](https://xastir.org/index.php/Main_Page) can now access AX.25 interfaces via the `libax25` package. diff --git a/third_party/nixpkgs/nixos/lib/make-disk-image.nix b/third_party/nixpkgs/nixos/lib/make-disk-image.nix index e784ec9e67..365fc1f03a 100644 --- a/third_party/nixpkgs/nixos/lib/make-disk-image.nix +++ b/third_party/nixpkgs/nixos/lib/make-disk-image.nix @@ -1,3 +1,85 @@ +/* Technical details + +`make-disk-image` has a bit of magic to minimize the amount of work to do in a virtual machine. + +It relies on the [LKL (Linux Kernel Library) project](https://github.com/lkl/linux) which provides Linux kernel as userspace library. + +The Nix-store only image only need to run LKL tools to produce an image and will never spawn a virtual machine, whereas full images will always require a virtual machine, but also use LKL. + +### Image preparation phase + +Image preparation phase will produce the initial image layout in a folder: + +- devise a root folder based on `$PWD` +- prepare the contents by copying and restoring ACLs in this root folder +- load in the Nix store database all additional paths computed by `pkgs.closureInfo` in a temporary Nix store +- run `nixos-install` in a temporary folder +- transfer from the temporary store the additional paths registered to the installed NixOS +- compute the size of the disk image based on the apparent size of the root folder +- partition the disk image using the corresponding script according to the partition table type +- format the partitions if needed +- use `cptofs` (LKL tool) to copy the root folder inside the disk image + +At this step, the disk image already contains the Nix store, it now only needs to be converted to the desired format to be used. + +### Image conversion phase + +Using `qemu-img`, the disk image is converted from a raw format to the desired format: qcow2(-compressed), vdi, vpc. + +### Image Partitioning + +#### `none` + +No partition table layout is written. The image is a bare filesystem image. + +#### `legacy` + +The image is partitioned using MBR. There is one primary ext4 partition starting at 1 MiB that fills the rest of the disk image. + +This partition layout is unsuitable for UEFI. + +#### `legacy+gpt` + +This partition table type uses GPT and: + +- create a "no filesystem" partition from 1MiB to 2MiB ; +- set `bios_grub` flag on this "no filesystem" partition, which marks it as a [GRUB BIOS partition](https://www.gnu.org/software/parted/manual/html_node/set.html) ; +- create a primary ext4 partition starting at 2MiB and extending to the full disk image ; +- perform optimal alignments checks on each partition + +This partition layout is unsuitable for UEFI boot, because it has no ESP (EFI System Partition) partition. It can work with CSM (Compatibility Support Module) which emulates legacy (BIOS) boot for UEFI. + +#### `efi` + +This partition table type uses GPT and: + +- creates an FAT32 ESP partition from 8MiB to specified `bootSize` parameter (256MiB by default), set it bootable ; +- creates an primary ext4 partition starting after the boot partition and extending to the full disk image + +#### `hybrid` + +This partition table type uses GPT and: + +- creates a "no filesystem" partition from 0 to 1MiB, set `bios_grub` flag on it ; +- creates an FAT32 ESP partition from 8MiB to specified `bootSize` parameter (256MiB by default), set it bootable ; +- creates a primary ext4 partition starting after the boot one and extending to the full disk image + +This partition could be booted by a BIOS able to understand GPT layouts and recognizing the MBR at the start. + +### How to run determinism analysis on results? + +Build your derivation with `--check` to rebuild it and verify it is the same. + +If it fails, you will be left with two folders with one having `.check`. + +You can use `diffoscope` to see the differences between the folders. + +However, `diffoscope` is currently not able to diff two QCOW2 filesystems, thus, it is advised to use raw format. + +Even if you use raw disks, `diffoscope` cannot diff the partition table and partitions recursively. + +To solve this, you can run `fdisk -l $image` and generate `dd if=$image of=$image-p$i.raw skip=$start count=$sectors` for each `(start, sectors)` listed in the `fdisk` output. Now, you will have each partition as a separate file and you can compare them in pairs. +*/ { pkgs , lib @@ -47,6 +129,18 @@ , # Whether to invoke `switch-to-configuration boot` during image creation installBootLoader ? true +, # Whether to output have EFIVARS available in $out/efi-vars.fd and use it during disk creation + touchEFIVars ? false + +, # OVMF firmware derivation + OVMF ? pkgs.OVMF.fd + +, # EFI firmware + efiFirmware ? OVMF.firmware + +, # EFI variables + efiVariables ? OVMF.variables + , # The root file system type. fsType ? "ext4" @@ -70,6 +164,22 @@ , # Disk image format, one of qcow2, qcow2-compressed, vdi, vpc, raw. format ? "raw" + # Whether to fix: + # - GPT Disk Unique Identifier (diskGUID) + # - GPT Partition Unique Identifier: depends on the layout, root partition UUID can be controlled through `rootGPUID` option + # - GPT Partition Type Identifier: fixed according to the layout, e.g. ESP partition, etc. through `parted` invocation. + # - Filesystem Unique Identifier when fsType = ext4 for *root partition*. + # BIOS/MBR support is "best effort" at the moment. + # Boot partitions may not be deterministic. + # Also, to fix last time checked of the ext4 partition if fsType = ext4. +, deterministic ? true + + # GPT Partition Unique Identifier for root partition. +, rootGPUID ? "F222513B-DED1-49FA-B591-20CE86A2FE7F" + # When fsType = ext4, this is the root Filesystem Unique Identifier. + # TODO: support other filesystems someday. +, rootFSUID ? (if fsType == "ext4" then rootGPUID else null) + , # Whether a nix channel based on the current source tree should be # made available inside the image. Useful for interactive use of nix # utils, but changes the hash of the image when the sources are @@ -80,15 +190,18 @@ additionalPaths ? [] }: -assert partitionTableType == "legacy" || partitionTableType == "legacy+gpt" || partitionTableType == "efi" || partitionTableType == "hybrid" || partitionTableType == "none"; -# We use -E offset=X below, which is only supported by e2fsprogs -assert partitionTableType != "none" -> fsType == "ext4"; +assert (lib.assertOneOf "partitionTableType" partitionTableType [ "legacy" "legacy+gpt" "efi" "hybrid" "none" ]); +assert (lib.assertMsg (fsType == "ext4" && deterministic -> rootFSUID != null) "In deterministic mode with a ext4 partition, rootFSUID must be non-null, by default, it is equal to rootGPUID."); + # We use -E offset=X below, which is only supported by e2fsprogs +assert (lib.assertMsg (partitionTableType != "none" -> fsType == "ext4") "to produce a partition table, we need to use -E offset flag which is support only for fsType = ext4"); +assert (lib.assertMsg (touchEFIVars -> partitionTableType == "hybrid" || partitionTableType == "efi" || partitionTableType == "legacy+gpt") "EFI variables can be used only with a partition table of type: hybrid, efi or legacy+gpt."); + # If only Nix store image, then: contents must be empty, configFile must be unset, and we should no install bootloader. +assert (lib.assertMsg (onlyNixStore -> contents == [] && configFile == null && !installBootLoader) "In a only Nix store image, the contents must be empty, no configuration must be provided and no bootloader should be installed."); # Either both or none of {user,group} need to be set -assert lib.all +assert (lib.assertMsg (lib.all (attrs: ((attrs.user or null) == null) == ((attrs.group or null) == null)) - contents; -assert onlyNixStore -> contents == [] && configFile == null && !installBootLoader; + contents) "Contents of the disk image should set none of {user, group} or both at the same time."); with lib; @@ -127,6 +240,14 @@ let format' = format; in let mkpart primary ext4 2MB -1 \ align-check optimal 2 \ print + ${optionalString deterministic '' + sgdisk \ + --disk-guid=97FD5997-D90B-4AA3-8D16-C1723AEA73C \ + --partition-guid=1:1C06F03B-704E-4657-B9CD-681A087A2FDC \ + --partition-guid=2:970C694F-AFD0-4B99-B750-CDB7A329AB6F \ + --partition-guid=3:${rootGPUID} \ + $diskImage + ''} ''; efi = '' parted --script $diskImage -- \ @@ -134,6 +255,13 @@ let format' = format; in let mkpart ESP fat32 8MiB ${bootSize} \ set 1 boot on \ mkpart primary ext4 ${bootSize} -1 + ${optionalString deterministic '' + sgdisk \ + --disk-guid=97FD5997-D90B-4AA3-8D16-C1723AEA73C \ + --partition-guid=1:1C06F03B-704E-4657-B9CD-681A087A2FDC \ + --partition-guid=2:${rootGPUID} \ + $diskImage + ''} ''; hybrid = '' parted --script $diskImage -- \ @@ -143,10 +271,20 @@ let format' = format; in let mkpart no-fs 0 1024KiB \ set 2 bios_grub on \ mkpart primary ext4 ${bootSize} -1 + ${optionalString deterministic '' + sgdisk \ + --disk-guid=97FD5997-D90B-4AA3-8D16-C1723AEA73C \ + --partition-guid=1:1C06F03B-704E-4657-B9CD-681A087A2FDC \ + --partition-guid=2:970C694F-AFD0-4B99-B750-CDB7A329AB6F \ + --partition-guid=3:${rootGPUID} \ + $diskImage + ''} ''; none = ""; }.${partitionTableType}; + useEFIBoot = touchEFIVars; + nixpkgs = cleanSource pkgs.path; # FIXME: merge with channel.nix / make-channel.nix. @@ -171,7 +309,9 @@ let format' = format; in let config.system.build.nixos-enter nix systemdMinimal - ] ++ stdenv.initialPath); + ] + ++ lib.optional deterministic gptfdisk + ++ stdenv.initialPath); # I'm preserving the line below because I'm going to search for it across nixpkgs to consolidate # image building logic. The comment right below this now appears in 4 different places in nixpkgs :) @@ -368,20 +508,35 @@ let format' = format; in let diskImage=$out/${filename} ''; + createEFIVars = '' + efiVars=$out/efi-vars.fd + cp ${efiVariables} $efiVars + chmod 0644 $efiVars + ''; + buildImage = pkgs.vmTools.runInLinuxVM ( pkgs.runCommand name { - preVM = prepareImage; + preVM = prepareImage + lib.optionalString touchEFIVars createEFIVars; buildInputs = with pkgs; [ util-linux e2fsprogs dosfstools ]; postVM = moveOrConvertImage + postVM; + QEMU_OPTS = + concatStringsSep " " (lib.optional useEFIBoot "-drive if=pflash,format=raw,unit=0,readonly=on,file=${efiFirmware}" + ++ lib.optionals touchEFIVars [ + "-drive if=pflash,format=raw,unit=1,file=$efiVars" + ] + ); memSize = 1024; } '' export PATH=${binPath}:$PATH rootDisk=${if partitionTableType != "none" then "/dev/vda${rootPartition}" else "/dev/vda"} - # Some tools assume these exist - ln -s vda /dev/xvda - ln -s vda /dev/sda + # It is necessary to set root filesystem unique identifier in advance, otherwise + # bootloader might get the wrong one and fail to boot. + # At the end, we reset again because we want deterministic timestamps. + ${optionalString (fsType == "ext4" && deterministic) '' + tune2fs -T now ${optionalString deterministic "-U ${rootFSUID}"} -c 0 -i 0 $rootDisk + ''} # make systemd-boot find ESP without udev mkdir /dev/block ln -s /dev/vda1 /dev/block/254:1 @@ -396,6 +551,8 @@ let format' = format; in let mkdir -p /mnt/boot mkfs.vfat -n ESP /dev/vda1 mount /dev/vda1 /mnt/boot + + ${optionalString touchEFIVars "mount -t efivarfs efivarfs /sys/firmware/efi/efivars"} ''} # Install a configuration.nix @@ -405,7 +562,13 @@ let format' = format; in let ''} ${lib.optionalString installBootLoader '' - # Set up core system link, GRUB, etc. + # In this throwaway resource, we only have /dev/vda, but the actual VM may refer to another disk for bootloader, e.g. /dev/vdb + # Use this option to create a symlink from vda to any arbitrary device you want. + ${optionalString (config.boot.loader.grub.device != "/dev/vda") '' + ln -s /dev/vda ${config.boot.loader.grub.device} + ''} + + # Set up core system link, bootloader (sd-boot, GRUB, uboot, etc.), etc. NIXOS_INSTALL_BOOTLOADER=1 nixos-enter --root $mountPoint -- /nix/var/nix/profiles/system/bin/switch-to-configuration boot # The above scripts will generate a random machine-id and we don't want to bake a single ID into all our images @@ -432,8 +595,12 @@ let format' = format; in let # Make sure resize2fs works. Note that resize2fs has stricter criteria for resizing than a normal # mount, so the `-c 0` and `-i 0` don't affect it. Setting it to `now` doesn't produce deterministic # output, of course, but we can fix that when/if we start making images deterministic. + # In deterministic mode, this is fixed to 1970-01-01 (UNIX timestamp 0). + # This two-step approach is necessary otherwise `tune2fs` will want a fresher filesystem to perform + # some changes. ${optionalString (fsType == "ext4") '' - tune2fs -T now -c 0 -i 0 $rootDisk + tune2fs -T now ${optionalString deterministic "-U ${rootFSUID}"} -c 0 -i 0 $rootDisk + ${optionalString deterministic "tune2fs -f -T 19700101 $rootDisk"} ''} '' ); diff --git a/third_party/nixpkgs/nixos/lib/make-options-doc/default.nix b/third_party/nixpkgs/nixos/lib/make-options-doc/default.nix index dea3eec5bd..a3436caad8 100644 --- a/third_party/nixpkgs/nixos/lib/make-options-doc/default.nix +++ b/third_party/nixpkgs/nixos/lib/make-options-doc/default.nix @@ -19,7 +19,7 @@ { pkgs , lib , options -, transformOptions ? lib.id # function for additional tranformations of the options +, transformOptions ? lib.id # function for additional transformations of the options , documentType ? "appendix" # TODO deprecate "appendix" in favor of "none" # and/or rename function to moduleOptionDoc for clean slate diff --git a/third_party/nixpkgs/nixos/lib/systemd-unit-options.nix b/third_party/nixpkgs/nixos/lib/systemd-unit-options.nix index 44f26572a2..9c7cb34f14 100644 --- a/third_party/nixpkgs/nixos/lib/systemd-unit-options.nix +++ b/third_party/nixpkgs/nixos/lib/systemd-unit-options.nix @@ -324,7 +324,11 @@ in rec { scriptArgs = mkOption { type = types.str; default = ""; - description = lib.mdDoc "Arguments passed to the main process script."; + example = "%i"; + description = lib.mdDoc '' + Arguments passed to the main process script. + Can contain specifiers (`%` placeholders expanded by systemd, see {manpage}`systemd.unit(5)`). + ''; }; preStart = mkOption { diff --git a/third_party/nixpkgs/nixos/lib/test-driver/test_driver/driver.py b/third_party/nixpkgs/nixos/lib/test-driver/test_driver/driver.py index e32f6810ca..6542a2e2f6 100644 --- a/third_party/nixpkgs/nixos/lib/test-driver/test_driver/driver.py +++ b/third_party/nixpkgs/nixos/lib/test-driver/test_driver/driver.py @@ -220,6 +220,20 @@ class Driver: res = driver.polling_conditions.pop() assert res is self.condition + def wait(self, timeout: int = 900) -> None: + def condition(last: bool) -> bool: + if last: + rootlog.info(f"Last chance for {self.condition.description}") + ret = self.condition.check(force=True) + if not ret and not last: + rootlog.info( + f"({self.condition.description} failure not fatal yet)" + ) + return ret + + with rootlog.nested(f"waiting for {self.condition.description}"): + retry(condition, timeout=timeout) + if fun_ is None: return Poll else: diff --git a/third_party/nixpkgs/nixos/lib/test-driver/test_driver/polling_condition.py b/third_party/nixpkgs/nixos/lib/test-driver/test_driver/polling_condition.py index 459845452f..02ca0a03ab 100644 --- a/third_party/nixpkgs/nixos/lib/test-driver/test_driver/polling_condition.py +++ b/third_party/nixpkgs/nixos/lib/test-driver/test_driver/polling_condition.py @@ -1,4 +1,5 @@ from typing import Callable, Optional +from math import isfinite import time from .logger import rootlog @@ -14,7 +15,7 @@ class PollingCondition: description: Optional[str] last_called: float - entered: bool + entry_count: int def __init__( self, @@ -34,14 +35,21 @@ class PollingCondition: self.description = str(description) self.last_called = float("-inf") - self.entered = False + self.entry_count = 0 - def check(self) -> bool: - if self.entered or not self.overdue: + def check(self, force: bool = False) -> bool: + if (self.entered or not self.overdue) and not force: return True with self, rootlog.nested(self.nested_message): - rootlog.info(f"Time since last: {time.monotonic() - self.last_called:.2f}s") + time_since_last = time.monotonic() - self.last_called + last_message = ( + f"Time since last: {time_since_last:.2f}s" + if isfinite(time_since_last) + else "(not called yet)" + ) + + rootlog.info(last_message) try: res = self.condition() # type: ignore except Exception: @@ -69,9 +77,16 @@ class PollingCondition: def overdue(self) -> bool: return self.last_called + self.seconds_interval < time.monotonic() + @property + def entered(self) -> bool: + # entry_count should never dip *below* zero + assert self.entry_count >= 0 + return self.entry_count > 0 + def __enter__(self) -> None: - self.entered = True + self.entry_count += 1 def __exit__(self, exc_type, exc_value, traceback) -> None: # type: ignore - self.entered = False + assert self.entered + self.entry_count -= 1 self.last_called = time.monotonic() diff --git a/third_party/nixpkgs/nixos/lib/testing-python.nix b/third_party/nixpkgs/nixos/lib/testing-python.nix index 134d38f1b6..4904ad6e35 100644 --- a/third_party/nixpkgs/nixos/lib/testing-python.nix +++ b/third_party/nixpkgs/nixos/lib/testing-python.nix @@ -1,3 +1,4 @@ +args@ { system , pkgs ? import ../.. { inherit system config; } # Use a minimal kernel? @@ -5,7 +6,7 @@ # Ignored , config ? { } # !!! See comment about args in lib/modules.nix -, specialArgs ? { } +, specialArgs ? throw "legacy - do not use, see error below" # Modules to add to each VM , extraConfigurations ? [ ] }: @@ -13,6 +14,13 @@ let nixos-lib = import ./default.nix { inherit (pkgs) lib; }; in +pkgs.lib.throwIf (args?specialArgs) '' + testing-python.nix: `specialArgs` is not supported anymore. If you're looking + for the public interface to the NixOS test framework, use `runTest`, and + `node.specialArgs`. + See https://nixos.org/manual/nixos/unstable/index.html#sec-calling-nixos-tests + and https://nixos.org/manual/nixos/unstable/index.html#test-opt-node.specialArgs +'' rec { inherit pkgs; diff --git a/third_party/nixpkgs/nixos/lib/testing/legacy.nix b/third_party/nixpkgs/nixos/lib/testing/legacy.nix index 868b8b65b1..b310575566 100644 --- a/third_party/nixpkgs/nixos/lib/testing/legacy.nix +++ b/third_party/nixpkgs/nixos/lib/testing/legacy.nix @@ -3,9 +3,10 @@ let inherit (lib) mkIf mkOption types; in { - # This needs options.warnings, which we don't have (yet?). + # This needs options.warnings and options.assertions, which we don't have (yet?). # imports = [ # (lib.mkRenamedOptionModule [ "machine" ] [ "nodes" "machine" ]) + # (lib.mkRemovedOptionModule [ "minimal" ] "The minimal kernel module was removed as it was broken and not used any more in nixpkgs.") # ]; options = { diff --git a/third_party/nixpkgs/nixos/lib/testing/nodes.nix b/third_party/nixpkgs/nixos/lib/testing/nodes.nix index 8e620c96b3..c538ab468c 100644 --- a/third_party/nixpkgs/nixos/lib/testing/nodes.nix +++ b/third_party/nixpkgs/nixos/lib/testing/nodes.nix @@ -23,7 +23,7 @@ let nixpkgs.config.allowAliases = false; }) testModuleArgs.config.extraBaseModules - ] ++ optional config.minimal ../../modules/testing/minimal-kernel.nix; + ]; }; @@ -78,14 +78,6 @@ in ''; }; - minimal = mkOption { - type = types.bool; - default = false; - description = mdDoc '' - Enable to configure all [{option}`nodes`](#test-opt-nodes) to run with a minimal kernel. - ''; - }; - nodesCompat = mkOption { internal = true; description = mdDoc '' diff --git a/third_party/nixpkgs/nixos/modules/config/no-x-libs.nix b/third_party/nixpkgs/nixos/modules/config/no-x-libs.nix index 3efadea823..70e265a65a 100644 --- a/third_party/nixpkgs/nixos/modules/config/no-x-libs.nix +++ b/third_party/nixpkgs/nixos/modules/config/no-x-libs.nix @@ -33,9 +33,13 @@ with lib; ffmpeg_4 = super.ffmpeg_4-headless; ffmpeg_5 = super.ffmpeg_5-headless; gobject-introspection = super.gobject-introspection.override { x11Support = false; }; + gpsd = super.gpsd.override { guiSupport = false; }; imagemagick = super.imagemagick.override { libX11Support = false; libXtSupport = false; }; imagemagickBig = super.imagemagickBig.override { libX11Support = false; libXtSupport = false; }; + libextractor = super.libextractor.override { gstreamerSupport = false; gtkSupport = false; }; libva = super.libva-minimal; + limesuite = super.limesuite.override { withGui = false; }; + msmtp = super.msmtp.override { withKeyring = false; }; networkmanager-fortisslvpn = super.networkmanager-fortisslvpn.override { withGnome = false; }; networkmanager-iodine = super.networkmanager-iodine.override { withGnome = false; }; networkmanager-l2tp = super.networkmanager-l2tp.override { withGnome = false; }; diff --git a/third_party/nixpkgs/nixos/modules/config/shells-environment.nix b/third_party/nixpkgs/nixos/modules/config/shells-environment.nix index 50bb9b1778..bc6583442e 100644 --- a/third_party/nixpkgs/nixos/modules/config/shells-environment.nix +++ b/third_party/nixpkgs/nixos/modules/config/shells-environment.nix @@ -42,8 +42,8 @@ in strings. The latter is concatenated, interspersed with colon characters. ''; - type = with types; attrsOf (either str (listOf str)); - apply = mapAttrs (n: v: if isList v then concatStringsSep ":" v else v); + type = with types; attrsOf (oneOf [ (listOf str) str path ]); + apply = mapAttrs (n: v: if isList v then concatStringsSep ":" v else "${v}"); }; environment.profiles = mkOption { diff --git a/third_party/nixpkgs/nixos/modules/config/system-environment.nix b/third_party/nixpkgs/nixos/modules/config/system-environment.nix index 5b226d5079..3993041852 100644 --- a/third_party/nixpkgs/nixos/modules/config/system-environment.nix +++ b/third_party/nixpkgs/nixos/modules/config/system-environment.nix @@ -1,6 +1,6 @@ # This module defines a system-wide environment that will be # initialised by pam_env (that is, not only in shells). -{ config, lib, pkgs, ... }: +{ config, lib, options, pkgs, ... }: with lib; @@ -32,8 +32,7 @@ in therefore not possible to use PAM style variables such as `@{HOME}`. ''; - type = with types; attrsOf (either str (listOf str)); - apply = mapAttrs (n: v: if isList v then concatStringsSep ":" v else v); + inherit (options.environment.variables) type apply; }; environment.profileRelativeSessionVariables = mkOption { diff --git a/third_party/nixpkgs/nixos/modules/config/users-groups.nix b/third_party/nixpkgs/nixos/modules/config/users-groups.nix index 61d70ccc19..19319b9309 100644 --- a/third_party/nixpkgs/nixos/modules/config/users-groups.nix +++ b/third_party/nixpkgs/nixos/modules/config/users-groups.nix @@ -101,16 +101,13 @@ let type = types.bool; default = false; description = lib.mdDoc '' - Indicates whether this is an account for a “real” user. This - automatically sets {option}`group` to - `users`, {option}`createHome` to - `true`, {option}`home` to - {file}`/home/«username»`, + Indicates whether this is an account for a “real” user. + This automatically sets {option}`group` to `users`, + {option}`createHome` to `true`, + {option}`home` to {file}`/home/«username»`, {option}`useDefaultShell` to `true`, - and {option}`isSystemUser` to - `false`. - Exactly one of `isNormalUser` and - `isSystemUser` must be true. + and {option}`isSystemUser` to `false`. + Exactly one of `isNormalUser` and `isSystemUser` must be true. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/hardware/gpgsmartcards.nix b/third_party/nixpkgs/nixos/modules/hardware/gpgsmartcards.nix index 43ade4d12e..68e1e5f74e 100644 --- a/third_party/nixpkgs/nixos/modules/hardware/gpgsmartcards.nix +++ b/third_party/nixpkgs/nixos/modules/hardware/gpgsmartcards.nix @@ -8,7 +8,7 @@ let # https://salsa.debian.org/debian/gnupg2/-/blob/debian/main/debian/scdaemon.udev # the latest rev of the entire debian gnupg2 repo as of 2021-04-28 - # the scdaemon.udev file was last commited on 2021-01-05 (7817a03): + # the scdaemon.udev file was last committed on 2021-01-05 (7817a03): scdaemonUdevRev = "01898735a015541e3ffb43c7245ac1e612f40836"; scdaemonRules = pkgs.fetchurl { diff --git a/third_party/nixpkgs/nixos/modules/hardware/opengl.nix b/third_party/nixpkgs/nixos/modules/hardware/opengl.nix index 5a5d88d9a4..9108bcbd16 100644 --- a/third_party/nixpkgs/nixos/modules/hardware/opengl.nix +++ b/third_party/nixpkgs/nixos/modules/hardware/opengl.nix @@ -26,9 +26,7 @@ in imports = [ (mkRenamedOptionModule [ "services" "xserver" "vaapiDrivers" ] [ "hardware" "opengl" "extraPackages" ]) - (mkRemovedOptionModule [ "hardware" "opengl" "s3tcSupport" ] '' - S3TC support is now always enabled in Mesa. - '') + (mkRemovedOptionModule [ "hardware" "opengl" "s3tcSupport" ] "S3TC support is now always enabled in Mesa.") ]; options = { @@ -89,21 +87,28 @@ in extraPackages = mkOption { type = types.listOf types.package; default = []; - example = literalExpression "with pkgs; [ vaapiIntel libvdpau-va-gl vaapiVdpau intel-ocl ]"; + example = literalExpression "with pkgs; [ intel-media-driver intel-ocl vaapiIntel ]"; description = lib.mdDoc '' - Additional packages to add to OpenGL drivers. This can be used - to add OpenCL drivers, VA-API/VDPAU drivers etc. + Additional packages to add to OpenGL drivers. + This can be used to add OpenCL drivers, VA-API/VDPAU drivers etc. + + ::: {.note} + intel-media-driver supports hardware Broadwell (2014) or newer. Older hardware should use the mostly unmaintained vaapiIntel driver. + ::: ''; }; extraPackages32 = mkOption { type = types.listOf types.package; default = []; - example = literalExpression "with pkgs.pkgsi686Linux; [ vaapiIntel libvdpau-va-gl vaapiVdpau ]"; + example = literalExpression "with pkgs.pkgsi686Linux; [ intel-media-driver vaapiIntel ]"; description = lib.mdDoc '' - Additional packages to add to 32-bit OpenGL drivers on - 64-bit systems. Used when {option}`driSupport32Bit` is - set. This can be used to add OpenCL drivers, VA-API/VDPAU drivers etc. + Additional packages to add to 32-bit OpenGL drivers on 64-bit systems. + Used when {option}`driSupport32Bit` is set. This can be used to add OpenCL drivers, VA-API/VDPAU drivers etc. + + ::: {.note} + intel-media-driver supports hardware Broadwell (2014) or newer. Older hardware should use the mostly unmaintained vaapiIntel driver. + ::: ''; }; @@ -124,7 +129,6 @@ in }; config = mkIf cfg.enable { - assertions = [ { assertion = cfg.driSupport32Bit -> pkgs.stdenv.isx86_64; message = "Option driSupport32Bit only makes sense on a 64-bit system."; diff --git a/third_party/nixpkgs/nixos/modules/hardware/openrazer.nix b/third_party/nixpkgs/nixos/modules/hardware/openrazer.nix index 247913297c..aaa4000e75 100644 --- a/third_party/nixpkgs/nixos/modules/hardware/openrazer.nix +++ b/third_party/nixpkgs/nixos/modules/hardware/openrazer.nix @@ -110,7 +110,7 @@ in boot.extraModulePackages = [ kernelPackages.openrazer ]; boot.kernelModules = drivers; - # Makes the man pages available so you can succesfully run + # Makes the man pages available so you can successfully run # > systemctl --user help openrazer-daemon environment.systemPackages = [ pkgs.python3Packages.openrazer-daemon.man ]; diff --git a/third_party/nixpkgs/nixos/modules/hardware/printers.nix b/third_party/nixpkgs/nixos/modules/hardware/printers.nix index 64c29bb0a5..85e3215127 100644 --- a/third_party/nixpkgs/nixos/modules/hardware/printers.nix +++ b/third_party/nixpkgs/nixos/modules/hardware/printers.nix @@ -100,7 +100,7 @@ in { default = {}; description = lib.mdDoc '' Sets PPD options for the printer. - {command}`lpoptions [-p printername] -l` shows suported PPD options for the given printer. + {command}`lpoptions [-p printername] -l` shows supported PPD options for the given printer. ''; }; }; diff --git a/third_party/nixpkgs/nixos/modules/installer/cd-dvd/installation-cd-minimal-new-kernel-no-zfs.nix b/third_party/nixpkgs/nixos/modules/installer/cd-dvd/installation-cd-minimal-new-kernel-no-zfs.nix new file mode 100644 index 0000000000..9d09cdbe02 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/installer/cd-dvd/installation-cd-minimal-new-kernel-no-zfs.nix @@ -0,0 +1,15 @@ +{ pkgs, ... }: + +{ + imports = [ ./installation-cd-minimal-new-kernel.nix ]; + + # Makes `availableOn` fail for zfs, see . + # This is a workaround since we cannot remove the `"zfs"` string from `supportedFilesystems`. + # The proper fix would be to make `supportedFilesystems` an attrset with true/false which we + # could then `lib.mkForce false` + nixpkgs.overlays = [(final: super: { + zfs = super.zfs.overrideAttrs(_: { + meta.platforms = []; + }); + })]; +} diff --git a/third_party/nixpkgs/nixos/modules/installer/cd-dvd/installation-cd-minimal.nix b/third_party/nixpkgs/nixos/modules/installer/cd-dvd/installation-cd-minimal.nix index abf0a5186b..7a3bd74cb7 100644 --- a/third_party/nixpkgs/nixos/modules/installer/cd-dvd/installation-cd-minimal.nix +++ b/third_party/nixpkgs/nixos/modules/installer/cd-dvd/installation-cd-minimal.nix @@ -9,6 +9,9 @@ ./installation-cd-base.nix ]; + # Causes a lot of uncached builds for a negligible decrease in size. + environment.noXlibs = lib.mkOverride 500 false; + documentation.man.enable = lib.mkOverride 500 true; fonts.fontconfig.enable = lib.mkForce false; diff --git a/third_party/nixpkgs/nixos/modules/installer/cd-dvd/iso-image.nix b/third_party/nixpkgs/nixos/modules/installer/cd-dvd/iso-image.nix index e37142f05f..81aca86173 100644 --- a/third_party/nixpkgs/nixos/modules/installer/cd-dvd/iso-image.nix +++ b/third_party/nixpkgs/nixos/modules/installer/cd-dvd/iso-image.nix @@ -70,18 +70,16 @@ let ; # Timeout in syslinux is in units of 1/10 of a second. - # 0 is used to disable timeouts. + # null means max timeout (35996, just under 1h in 1/10 seconds) + # 0 means disable timeout syslinuxTimeout = if config.boot.loader.timeout == null then - 0 + 35996 else - max (config.boot.loader.timeout * 10) 1; - - - max = x: y: if x > y then x else y; + config.boot.loader.timeout * 10; # The configuration file for syslinux. - # Notes on syslinux configuration and UNetbootin compatiblity: + # Notes on syslinux configuration and UNetbootin compatibility: # * Do not use '/syslinux/syslinux.cfg' as the path for this # configuration. UNetbootin will not parse the file and use it as-is. # This results in a broken configuration if the partition label does diff --git a/third_party/nixpkgs/nixos/modules/installer/sd-card/sd-image-aarch64-new-kernel-no-zfs-installer.nix b/third_party/nixpkgs/nixos/modules/installer/sd-card/sd-image-aarch64-new-kernel-no-zfs-installer.nix new file mode 100644 index 0000000000..0e50559602 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/installer/sd-card/sd-image-aarch64-new-kernel-no-zfs-installer.nix @@ -0,0 +1,15 @@ +{ pkgs, ... }: + +{ + imports = [ ./sd-image-aarch64-new-kernel-installer.nix ]; + + # Makes `availableOn` fail for zfs, see . + # This is a workaround since we cannot remove the `"zfs"` string from `supportedFilesystems`. + # The proper fix would be to make `supportedFilesystems` an attrset with true/false which we + # could then `lib.mkForce false` + nixpkgs.overlays = [(final: super: { + zfs = super.zfs.overrideAttrs(_: { + meta.platforms = []; + }); + })]; +} diff --git a/third_party/nixpkgs/nixos/modules/misc/label.nix b/third_party/nixpkgs/nixos/modules/misc/label.nix index 0c29d13aab..44ee812249 100644 --- a/third_party/nixpkgs/nixos/modules/misc/label.nix +++ b/third_party/nixpkgs/nixos/modules/misc/label.nix @@ -27,7 +27,7 @@ in variable (defaults to the value of {option}`system.nixos.version`). - Can be overriden by setting {env}`NIXOS_LABEL`. + Can be overridden by setting {env}`NIXOS_LABEL`. Useful for not loosing track of configurations built from different nixos branches/revisions, e.g.: diff --git a/third_party/nixpkgs/nixos/modules/misc/man-db.nix b/third_party/nixpkgs/nixos/modules/misc/man-db.nix index df903259fa..299b11d1fc 100644 --- a/third_party/nixpkgs/nixos/modules/misc/man-db.nix +++ b/third_party/nixpkgs/nixos/modules/misc/man-db.nix @@ -52,13 +52,11 @@ in environment.systemPackages = [ cfg.package ]; environment.etc."man_db.conf".text = let - mandbForBuild = if pkgs.stdenv.hostPlatform == pkgs.stdenv.buildPlatform then - cfg.package - else - pkgs.buildPackages.man-db; - manualCache = pkgs.runCommand "man-cache" { } '' + manualCache = pkgs.runCommand "man-cache" { + nativeBuildInputs = [ cfg.package ]; + } '' echo "MANDB_MAP ${cfg.manualPages}/share/man $out" > man.conf - ${mandbForBuild}/bin/mandb -C man.conf -psc >/dev/null 2>&1 + mandb -C man.conf -psc >/dev/null 2>&1 ''; in '' diff --git a/third_party/nixpkgs/nixos/modules/misc/version.nix b/third_party/nixpkgs/nixos/modules/misc/version.nix index b3cdaf5568..1067b21a22 100644 --- a/third_party/nixpkgs/nixos/modules/misc/version.nix +++ b/third_party/nixpkgs/nixos/modules/misc/version.nix @@ -89,6 +89,12 @@ in stateVersion = mkOption { type = types.str; + # TODO Remove this and drop the default of the option so people are forced to set it. + # Doing this also means fixing the comment in nixos/modules/testing/test-instrumentation.nix + apply = v: + lib.warnIf (options.system.stateVersion.highestPrio == (lib.mkOptionDefault { }).priority) + "system.stateVersion is not set, defaulting to ${v}. Read why this matters on https://nixos.org/manual/nixos/stable/options.html#opt-system.stateVersion." + v; default = cfg.release; defaultText = literalExpression "config.${opt.release}"; description = lib.mdDoc '' @@ -149,14 +155,6 @@ in "os-release".text = attrsToText osReleaseContents; }; - # We have to use `warnings` because when warning in the default of the option - # the warning would also be shown when building the manual since the manual - # has to evaluate the default. - # - # TODO Remove this and drop the default of the option so people are forced to set it. - # Doing this also means fixing the comment in nixos/modules/testing/test-instrumentation.nix - warnings = lib.optional (options.system.stateVersion.highestPrio == (lib.mkOptionDefault { }).priority) - "system.stateVersion is not set, defaulting to ${config.system.stateVersion}. Read why this matters on https://nixos.org/manual/nixos/stable/options.html#opt-system.stateVersion."; }; # uses version info nixpkgs, which requires a full nixpkgs path diff --git a/third_party/nixpkgs/nixos/modules/module-list.nix b/third_party/nixpkgs/nixos/modules/module-list.nix index 9e5696eb5c..dd0921243a 100644 --- a/third_party/nixpkgs/nixos/modules/module-list.nix +++ b/third_party/nixpkgs/nixos/modules/module-list.nix @@ -180,6 +180,7 @@ ./programs/hamster.nix ./programs/htop.nix ./programs/iftop.nix + ./programs/i3lock.nix ./programs/iotop.nix ./programs/java.nix ./programs/k3b.nix @@ -200,6 +201,7 @@ ./programs/nbd.nix ./programs/neovim.nix ./programs/nethoscope.nix + ./programs/nix-index.nix ./programs/nix-ld.nix ./programs/nm-applet.nix ./programs/nncp.nix @@ -243,6 +245,7 @@ ./programs/waybar.nix ./programs/weylus.nix ./programs/wireshark.nix + ./programs/xastir.nix ./programs/wshowkeys.nix ./programs/xfconf.nix ./programs/xfs_quota.nix @@ -724,6 +727,7 @@ ./services/monitoring/riemann.nix ./services/monitoring/scollector.nix ./services/monitoring/smartd.nix + ./services/monitoring/statsd.nix ./services/monitoring/sysstat.nix ./services/monitoring/teamviewer.nix ./services/monitoring/telegraf.nix @@ -819,6 +823,8 @@ ./services/networking/firefox-syncserver.nix ./services/networking/fireqos.nix ./services/networking/firewall.nix + ./services/networking/firewall-iptables.nix + ./services/networking/firewall-nftables.nix ./services/networking/flannel.nix ./services/networking/freenet.nix ./services/networking/freeradius.nix @@ -873,6 +879,7 @@ ./services/networking/miniupnpd.nix ./services/networking/miredo.nix ./services/networking/mjpg-streamer.nix + ./services/networking/mmsd.nix ./services/networking/monero.nix ./services/networking/morty.nix ./services/networking/mosquitto.nix @@ -887,6 +894,8 @@ ./services/networking/namecoind.nix ./services/networking/nar-serve.nix ./services/networking/nat.nix + ./services/networking/nat-iptables.nix + ./services/networking/nat-nftables.nix ./services/networking/nats.nix ./services/networking/nbd.nix ./services/networking/ncdns.nix @@ -1019,6 +1028,7 @@ ./services/networking/znc/default.nix ./services/printing/cupsd.nix ./services/printing/ipp-usb.nix + ./services/printing/cups-pdf.nix ./services/scheduling/atd.nix ./services/scheduling/cron.nix ./services/scheduling/fcron.nix @@ -1093,6 +1103,7 @@ ./services/video/rtsp-simple-server.nix ./services/video/unifi-video.nix ./services/wayland/cage.nix + ./services/web-apps/akkoma.nix ./services/web-apps/alps.nix ./services/web-apps/atlassian/confluence.nix ./services/web-apps/atlassian/crowd.nix @@ -1300,6 +1311,7 @@ ./tasks/filesystems/btrfs.nix ./tasks/filesystems/cifs.nix ./tasks/filesystems/ecryptfs.nix + ./tasks/filesystems/envfs.nix ./tasks/filesystems/exfat.nix ./tasks/filesystems/ext.nix ./tasks/filesystems/f2fs.nix diff --git a/third_party/nixpkgs/nixos/modules/profiles/keys/ssh_host_ed25519_key b/third_party/nixpkgs/nixos/modules/profiles/keys/ssh_host_ed25519_key new file mode 100644 index 0000000000..b184897953 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/profiles/keys/ssh_host_ed25519_key @@ -0,0 +1,7 @@ +-----BEGIN OPENSSH PRIVATE KEY----- +b3BlbnNzaC1rZXktdjEAAAAABG5vbmUAAAAEbm9uZQAAAAAAAAABAAAAMwAAAAtzc2gtZW +QyNTUxOQAAACCQVnMW/wZWqrdWrjrRPhfEFFq1KLYguagSflLhFnVQmwAAAJASuMMnErjD +JwAAAAtzc2gtZWQyNTUxOQAAACCQVnMW/wZWqrdWrjrRPhfEFFq1KLYguagSflLhFnVQmw +AAAEDIN2VWFyggtoSPXcAFy8dtG1uAig8sCuyE21eMDt2GgJBWcxb/Blaqt1auOtE+F8QU +WrUotiC5qBJ+UuEWdVCbAAAACnJvb3RAbml4b3MBAgM= +-----END OPENSSH PRIVATE KEY----- diff --git a/third_party/nixpkgs/nixos/modules/profiles/keys/ssh_host_ed25519_key.pub b/third_party/nixpkgs/nixos/modules/profiles/keys/ssh_host_ed25519_key.pub new file mode 100644 index 0000000000..2c45826715 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/profiles/keys/ssh_host_ed25519_key.pub @@ -0,0 +1 @@ +ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIJBWcxb/Blaqt1auOtE+F8QUWrUotiC5qBJ+UuEWdVCb root@nixos diff --git a/third_party/nixpkgs/nixos/modules/profiles/macos-builder.nix b/third_party/nixpkgs/nixos/modules/profiles/macos-builder.nix new file mode 100644 index 0000000000..a981814730 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/profiles/macos-builder.nix @@ -0,0 +1,163 @@ +{ config, lib, pkgs, ... }: + +let + keysDirectory = "/var/keys"; + + user = "builder"; + + keyType = "ed25519"; + +in + +{ imports = [ + ../virtualisation/qemu-vm.nix + + # Avoid a dependency on stateVersion + { + disabledModules = [ + ../virtualisation/nixos-containers.nix + ../services/x11/desktop-managers/xterm.nix + ]; + config = { + }; + options.boot.isContainer = lib.mkOption { default = false; internal = true; }; + } + ]; + + # The builder is not intended to be used interactively + documentation.enable = false; + + environment.etc = { + "ssh/ssh_host_ed25519_key" = { + mode = "0600"; + + source = ./keys/ssh_host_ed25519_key; + }; + + "ssh/ssh_host_ed25519_key.pub" = { + mode = "0644"; + + source = ./keys/ssh_host_ed25519_key.pub; + }; + }; + + # DNS fails for QEMU user networking (SLiRP) on macOS. See: + # + # https://github.com/utmapp/UTM/issues/2353 + # + # This works around that by using a public DNS server other than the DNS + # server that QEMU provides (normally 10.0.2.3) + networking.nameservers = [ "8.8.8.8" ]; + + nix.settings = { + auto-optimise-store = true; + + min-free = 1024 * 1024 * 1024; + + max-free = 3 * 1024 * 1024 * 1024; + + trusted-users = [ "root" user ]; + }; + + services.openssh = { + enable = true; + + authorizedKeysFiles = [ "${keysDirectory}/%u_${keyType}.pub" ]; + }; + + system.build.macos-builder-installer = + let + privateKey = "/etc/nix/${user}_${keyType}"; + + publicKey = "${privateKey}.pub"; + + # This installCredentials script is written so that it's as easy as + # possible for a user to audit before confirming the `sudo` + installCredentials = hostPkgs.writeShellScript "install-credentials" '' + KEYS="''${1}" + INSTALL=${hostPkgs.coreutils}/bin/install + "''${INSTALL}" -g nixbld -m 600 "''${KEYS}/${user}_${keyType}" ${privateKey} + "''${INSTALL}" -g nixbld -m 644 "''${KEYS}/${user}_${keyType}.pub" ${publicKey} + ''; + + hostPkgs = config.virtualisation.host.pkgs; + + script = hostPkgs.writeShellScriptBin "create-builder" '' + KEYS="''${KEYS:-./keys}" + ${hostPkgs.coreutils}/bin/mkdir --parent "''${KEYS}" + PRIVATE_KEY="''${KEYS}/${user}_${keyType}" + PUBLIC_KEY="''${PRIVATE_KEY}.pub" + if [ ! -e "''${PRIVATE_KEY}" ] || [ ! -e "''${PUBLIC_KEY}" ]; then + ${hostPkgs.coreutils}/bin/rm --force -- "''${PRIVATE_KEY}" "''${PUBLIC_KEY}" + ${hostPkgs.openssh}/bin/ssh-keygen -q -f "''${PRIVATE_KEY}" -t ${keyType} -N "" -C 'builder@localhost' + fi + if ! ${hostPkgs.diffutils}/bin/cmp "''${PUBLIC_KEY}" ${publicKey}; then + (set -x; sudo --reset-timestamp ${installCredentials} "''${KEYS}") + fi + KEYS="$(nix-store --add "$KEYS")" ${config.system.build.vm}/bin/run-nixos-vm + ''; + + in + script.overrideAttrs (old: { + meta = (old.meta or { }) // { + platforms = lib.platforms.darwin; + }; + }); + + system = { + # To prevent gratuitous rebuilds on each change to Nixpkgs + nixos.revision = null; + + stateVersion = lib.mkDefault (throw '' + The macOS linux builder should not need a stateVersion to be set, but a module + has accessed stateVersion nonetheless. + Please inspect the trace of the following command to figure out which module + has a dependency on stateVersion. + + nix-instantiate --attr darwin.builder --show-trace + ''); + }; + + users.users."${user}"= { + isNormalUser = true; + }; + + virtualisation = { + diskSize = 20 * 1024; + + memorySize = 3 * 1024; + + forwardPorts = [ + { from = "host"; guest.port = 22; host.port = 22; } + ]; + + # Disable graphics for the builder since users will likely want to run it + # non-interactively in the background. + graphics = false; + + sharedDirectories.keys = { + source = "\"$KEYS\""; + target = keysDirectory; + }; + + # If we don't enable this option then the host will fail to delegate builds + # to the guest, because: + # + # - The host will lock the path to build + # - The host will delegate the build to the guest + # - The guest will attempt to lock the same path and fail because + # the lockfile on the host is visible on the guest + # + # Snapshotting the host's /nix/store as an image isolates the guest VM's + # /nix/store from the host's /nix/store, preventing this problem. + useNixStoreImage = true; + + # Obviously the /nix/store needs to be writable on the guest in order for it + # to perform builds. + writableStore = true; + + # This ensures that anything built on the guest isn't lost when the guest is + # restarted. + writableStoreUseTmpfs = false; + }; +} diff --git a/third_party/nixpkgs/nixos/modules/programs/firefox.nix b/third_party/nixpkgs/nixos/modules/programs/firefox.nix index dfd912cdf5..3a5105c57d 100644 --- a/third_party/nixpkgs/nixos/modules/programs/firefox.nix +++ b/third_party/nixpkgs/nixos/modules/programs/firefox.nix @@ -42,7 +42,7 @@ in description = mdDoc '' Group policies to install. - See [Mozilla's documentation](https://github.com/mozilla/policy-templates/blob/master/README.md") + See [Mozilla's documentation](https://github.com/mozilla/policy-templates/blob/master/README.md) for a list of available options. This can be used to install extensions declaratively! Check out the @@ -79,6 +79,114 @@ in ''; }; + languagePacks = mkOption { + # Available languages can be found in https://releases.mozilla.org/pub/firefox/releases/${cfg.package.version}/linux-x86_64/xpi/ + type = types.listOf (types.enum ([ + "ach" + "af" + "an" + "ar" + "ast" + "az" + "be" + "bg" + "bn" + "br" + "bs" + "ca-valencia" + "ca" + "cak" + "cs" + "cy" + "da" + "de" + "dsb" + "el" + "en-CA" + "en-GB" + "en-US" + "eo" + "es-AR" + "es-CL" + "es-ES" + "es-MX" + "et" + "eu" + "fa" + "ff" + "fi" + "fr" + "fy-NL" + "ga-IE" + "gd" + "gl" + "gn" + "gu-IN" + "he" + "hi-IN" + "hr" + "hsb" + "hu" + "hy-AM" + "ia" + "id" + "is" + "it" + "ja" + "ka" + "kab" + "kk" + "km" + "kn" + "ko" + "lij" + "lt" + "lv" + "mk" + "mr" + "ms" + "my" + "nb-NO" + "ne-NP" + "nl" + "nn-NO" + "oc" + "pa-IN" + "pl" + "pt-BR" + "pt-PT" + "rm" + "ro" + "ru" + "sco" + "si" + "sk" + "sl" + "son" + "sq" + "sr" + "sv-SE" + "szl" + "ta" + "te" + "th" + "tl" + "tr" + "trs" + "uk" + "ur" + "uz" + "vi" + "xh" + "zh-CN" + "zh-TW" + ])); + default = [ ]; + description = mdDoc '' + The language packs to install. + ''; + }; + autoConfig = mkOption { type = types.lines; default = ""; @@ -136,10 +244,19 @@ in }; # Preferences are converted into a policy - programs.firefox.policies = mkIf (cfg.preferences != { }) { + programs.firefox.policies = { Preferences = (mapAttrs (_: value: { Value = value; Status = cfg.preferencesStatus; }) cfg.preferences); + ExtensionSettings = listToAttrs (map + (lang: nameValuePair + "langpack-${lang}@firefox.mozilla.org" + { + installation_mode = "normal_installed"; + install_url = "https://releases.mozilla.org/pub/firefox/releases/${cfg.package.version}/linux-x86_64/xpi/${lang}.xpi"; + } + ) + cfg.languagePacks); }; }; diff --git a/third_party/nixpkgs/nixos/modules/programs/git.nix b/third_party/nixpkgs/nixos/modules/programs/git.nix index acff5dfdd8..4e271a8c13 100644 --- a/third_party/nixpkgs/nixos/modules/programs/git.nix +++ b/third_party/nixpkgs/nixos/modules/programs/git.nix @@ -20,15 +20,41 @@ in }; config = mkOption { - type = with types; attrsOf (attrsOf anything); - default = { }; + type = + with types; + let + gitini = attrsOf (attrsOf anything); + in + either gitini (listOf gitini) // { + merge = loc: defs: + let + config = foldl' + (acc: { value, ... }@x: acc // (if isList value then { + ordered = acc.ordered ++ value; + } else { + unordered = acc.unordered ++ [ x ]; + })) + { + ordered = [ ]; + unordered = [ ]; + } + defs; + in + [ (gitini.merge loc config.unordered) ] ++ config.ordered; + }; + default = [ ]; example = { init.defaultBranch = "main"; url."https://github.com/".insteadOf = [ "gh:" "github:" ]; }; description = lib.mdDoc '' - Configuration to write to /etc/gitconfig. See the CONFIGURATION FILE - section of git-config(1) for more information. + Configuration to write to /etc/gitconfig. A list can also be + specified to keep the configuration in order. For example, setting + `config` to `[ { foo.x = 42; } { bar.y = 42; }]` will put the `foo` + section before the `bar` section unlike the default alphabetical + order, which can be helpful for sections such as `include` and + `includeIf`. See the CONFIGURATION FILE section of git-config(1) for + more information. ''; }; @@ -48,8 +74,8 @@ in config = mkMerge [ (mkIf cfg.enable { environment.systemPackages = [ cfg.package ]; - environment.etc.gitconfig = mkIf (cfg.config != {}) { - text = generators.toGitINI cfg.config; + environment.etc.gitconfig = mkIf (cfg.config != [ ]) { + text = concatMapStringsSep "\n" generators.toGitINI cfg.config; }; }) (mkIf (cfg.enable && cfg.lfs.enable) { diff --git a/third_party/nixpkgs/nixos/modules/programs/i3lock.nix b/third_party/nixpkgs/nixos/modules/programs/i3lock.nix new file mode 100644 index 0000000000..466ae59c92 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/programs/i3lock.nix @@ -0,0 +1,58 @@ +{ config, lib, pkgs, ... }: + +with lib; + +let + + cfg = config.programs.i3lock; + +in { + + ###### interface + + options = { + programs.i3lock = { + enable = mkEnableOption (mdDoc "i3lock"); + package = mkOption { + type = types.package; + default = pkgs.i3lock; + defaultText = literalExpression "pkgs.i3lock"; + example = literalExpression '' + pkgs.i3lock-color + ''; + description = mdDoc '' + Specify which package to use for the i3lock program, + The i3lock package must include a i3lock file or link in its out directory in order for the u2fSupport option to work correctly. + ''; + }; + u2fSupport = mkOption { + type = types.bool; + default = false; + example = true; + description = mdDoc '' + Whether to enable U2F support in the i3lock program. + U2F enables authentication using a hardware device, such as a security key. + When U2F support is enabled, the i3lock program will set the setuid bit on the i3lock binary and enable the pam u2fAuth service, + ''; + }; + }; + }; + + ###### implementation + + config = mkIf cfg.enable { + + environment.systemPackages = [ cfg.package ]; + + security.wrappers.i3lock = mkIf cfg.u2fSupport { + setuid = true; + owner = "root"; + group = "root"; + source = "${cfg.package.out}/bin/i3lock"; + }; + + security.pam.services.i3lock.u2fAuth = cfg.u2fSupport; + + }; + +} diff --git a/third_party/nixpkgs/nixos/modules/programs/nix-index.nix b/third_party/nixpkgs/nixos/modules/programs/nix-index.nix new file mode 100644 index 0000000000..a494b9d8c2 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/programs/nix-index.nix @@ -0,0 +1,62 @@ +{ config, lib, pkgs, ... }: +let + cfg = config.programs.nix-index; +in { + options.programs.nix-index = with lib; { + enable = mkEnableOption (lib.mdDoc "nix-index, a file database for nixpkgs"); + + package = mkOption { + type = types.package; + default = pkgs.nix-index; + defaultText = literalExpression "pkgs.nix-index"; + description = lib.mdDoc "Package providing the `nix-index` tool."; + }; + + enableBashIntegration = mkEnableOption (lib.mdDoc "Bash integration") // { + default = true; + }; + + enableZshIntegration = mkEnableOption (lib.mdDoc "Zsh integration") // { + default = true; + }; + + enableFishIntegration = mkEnableOption (lib.mdDoc "Fish integration") // { + default = true; + }; + }; + + config = lib.mkIf cfg.enable { + assertions = let + checkOpt = name: { + assertion = cfg.${name} -> !config.programs.command-not-found.enable; + message = '' + The 'programs.command-not-found.enable' option is mutually exclusive + with the 'programs.nix-index.${name}' option. + ''; + }; + in [ (checkOpt "enableBashIntegration") (checkOpt "enableZshIntegration") ]; + + environment.systemPackages = [ cfg.package ]; + + programs.bash.interactiveShellInit = lib.mkIf cfg.enableBashIntegration '' + source ${cfg.package}/etc/profile.d/command-not-found.sh + ''; + + programs.zsh.interactiveShellInit = lib.mkIf cfg.enableZshIntegration '' + source ${cfg.package}/etc/profile.d/command-not-found.sh + ''; + + # See https://github.com/bennofs/nix-index/issues/126 + programs.fish.interactiveShellInit = let + wrapper = pkgs.writeScript "command-not-found" '' + #!${pkgs.bash}/bin/bash + source ${cfg.package}/etc/profile.d/command-not-found.sh + command_not_found_handle "$@" + ''; + in lib.mkIf cfg.enableFishIntegration '' + function __fish_command_not_found_handler --on-event fish_command_not_found + ${wrapper} $argv + end + ''; + }; +} diff --git a/third_party/nixpkgs/nixos/modules/programs/nix-ld.nix b/third_party/nixpkgs/nixos/modules/programs/nix-ld.nix index 602278d1ba..f753cf5f97 100644 --- a/third_party/nixpkgs/nixos/modules/programs/nix-ld.nix +++ b/third_party/nixpkgs/nixos/modules/programs/nix-ld.nix @@ -1,10 +1,68 @@ { pkgs, lib, config, ... }: +let + cfg = config.programs.nix-ld; + + # TODO make glibc here configureable? + nix-ld-so = pkgs.runCommand "ld.so" {} '' + ln -s "$(cat '${pkgs.stdenv.cc}/nix-support/dynamic-linker')" $out + ''; + + nix-ld-libraries = pkgs.buildEnv { + name = "lb-library-path"; + pathsToLink = [ "/lib" ]; + paths = map lib.getLib cfg.libraries; + extraPrefix = "/share/nix-ld"; + ignoreCollisions = true; + }; + + # We currently take all libraries from systemd and nix as the default. + # Is there a better list? + baseLibraries = with pkgs; [ + zlib + zstd + stdenv.cc.cc + curl + openssl + attr + libssh + bzip2 + libxml2 + acl + libsodium + util-linux + xz + systemd + ]; +in { meta.maintainers = [ lib.maintainers.mic92 ]; options = { - programs.nix-ld.enable = lib.mkEnableOption (lib.mdDoc ''nix-ld, Documentation: ''); + programs.nix-ld = { + enable = lib.mkEnableOption (lib.mdDoc ''nix-ld, Documentation: ''); + package = lib.mkOption { + type = lib.types.package; + description = lib.mdDoc "Which package to use for the nix-ld."; + default = pkgs.nix-ld; + defaultText = lib.mdDoc "pkgs.nix-ld"; + }; + libraries = lib.mkOption { + type = lib.types.listOf lib.types.package; + description = lib.mdDoc "Libraries that automatically become available to all programs. The default set includes common libraries."; + default = baseLibraries; + defaultText = lib.mdDoc "baseLibraries"; + }; + }; }; config = lib.mkIf config.programs.nix-ld.enable { - systemd.tmpfiles.packages = [ pkgs.nix-ld ]; + systemd.tmpfiles.packages = [ cfg.package ]; + + environment.systemPackages = [ nix-ld-libraries ]; + + environment.pathsToLink = [ "/share/nix-ld" ]; + + environment.variables = { + NIX_LD = toString nix-ld-so; + NIX_LD_LIBRARY_PATH = "/run/current-system/sw/share/nix-ld/lib"; + }; }; } diff --git a/third_party/nixpkgs/nixos/modules/programs/xastir.nix b/third_party/nixpkgs/nixos/modules/programs/xastir.nix new file mode 100644 index 0000000000..0977668d83 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/programs/xastir.nix @@ -0,0 +1,23 @@ +{ config, lib, pkgs, ... }: + +with lib; + +let + cfg = config.programs.xastir; +in { + meta.maintainers = with maintainers; [ melling ]; + + options.programs.xastir = { + enable = mkEnableOption (mdDoc "Enable Xastir Graphical APRS client"); + }; + + config = mkIf cfg.enable { + environment.systemPackages = with pkgs; [ xastir ]; + security.wrappers.xastir = { + source = "${pkgs.xastir}/bin/xastir"; + capabilities = "cap_net_raw+p"; + owner = "root"; + group = "root"; + }; + }; +} diff --git a/third_party/nixpkgs/nixos/modules/security/acme/default.nix b/third_party/nixpkgs/nixos/modules/security/acme/default.nix index 4e163901b0..a380bb5484 100644 --- a/third_party/nixpkgs/nixos/modules/security/acme/default.nix +++ b/third_party/nixpkgs/nixos/modules/security/acme/default.nix @@ -714,7 +714,7 @@ in { default = false; description = lib.mdDoc '' Whether to use the root user when generating certs. This is not recommended - for security + compatiblity reasons. If a service requires root owned certificates + for security + compatibility reasons. If a service requires root owned certificates consider following the guide on "Using ACME with services demanding root owned certificates" in the NixOS manual, and only using this as a fallback or for testing. @@ -765,7 +765,7 @@ in { To use the let's encrypt staging server, use security.acme.server = "https://acme-staging-v02.api.letsencrypt.org/directory". '') - (mkRemovedOptionModule [ "security" "acme" "directory" ] "ACME Directory is now hardcoded to /var/lib/acme and its permisisons are managed by systemd. See https://github.com/NixOS/nixpkgs/issues/53852 for more info.") + (mkRemovedOptionModule [ "security" "acme" "directory" ] "ACME Directory is now hardcoded to /var/lib/acme and its permissions are managed by systemd. See https://github.com/NixOS/nixpkgs/issues/53852 for more info.") (mkRemovedOptionModule [ "security" "acme" "preDelay" ] "This option has been removed. If you want to make sure that something executes before certificates are provisioned, add a RequiredBy=acme-\${cert}.service to the service you want to execute before the cert renewal") (mkRemovedOptionModule [ "security" "acme" "activationDelay" ] "This option has been removed. If you want to make sure that something executes before certificates are provisioned, add a RequiredBy=acme-\${cert}.service to the service you want to execute before the cert renewal") (mkChangedOptionModule [ "security" "acme" "validMin" ] [ "security" "acme" "defaults" "validMinDays" ] (config: config.security.acme.validMin / (24 * 3600))) diff --git a/third_party/nixpkgs/nixos/modules/security/apparmor.nix b/third_party/nixpkgs/nixos/modules/security/apparmor.nix index 0d858a4585..24b48338ed 100644 --- a/third_party/nixpkgs/nixos/modules/security/apparmor.nix +++ b/third_party/nixpkgs/nixos/modules/security/apparmor.nix @@ -202,7 +202,7 @@ in # (indirectly read from /etc/apparmor.d/*, without recursing into sub-directory). # Note that this does not remove profiles dynamically generated by libvirt. [ "${pkgs.apparmor-utils}/bin/aa-remove-unknown" ] ++ - # Optionaly kill the processes which are unconfined but now have a profile loaded + # Optionally kill the processes which are unconfined but now have a profile loaded # (because AppArmor can only start to confine new processes). optional cfg.killUnconfinedConfinables killUnconfinedConfinables; ExecStop = "${pkgs.apparmor-utils}/bin/aa-teardown"; diff --git a/third_party/nixpkgs/nixos/modules/security/pam.nix b/third_party/nixpkgs/nixos/modules/security/pam.nix index 08b51788e0..273bc79634 100644 --- a/third_party/nixpkgs/nixos/modules/security/pam.nix +++ b/third_party/nixpkgs/nixos/modules/security/pam.nix @@ -282,7 +282,7 @@ let defaultText = literalExpression "config.security.pam.mount.enable"; type = types.bool; description = lib.mdDoc '' - Enable PAM mount (pam_mount) system to mount fileystems on user login. + Enable PAM mount (pam_mount) system to mount filesystems on user login. ''; }; @@ -305,7 +305,7 @@ let default = false; type = types.bool; description = lib.mdDoc '' - Wheather the delay after typing a wrong password should be disabled. + Whether the delay after typing a wrong password should be disabled. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/security/pam_mount.nix b/third_party/nixpkgs/nixos/modules/security/pam_mount.nix index 11cc13a8cb..481f1f3d38 100644 --- a/third_party/nixpkgs/nixos/modules/security/pam_mount.nix +++ b/third_party/nixpkgs/nixos/modules/security/pam_mount.nix @@ -24,7 +24,7 @@ in type = types.bool; default = false; description = lib.mdDoc '' - Enable PAM mount system to mount fileystems on user login. + Enable PAM mount system to mount filesystems on user login. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/security/wrappers/default.nix b/third_party/nixpkgs/nixos/modules/security/wrappers/default.nix index a58c792d8c..4b62abd658 100644 --- a/third_party/nixpkgs/nixos/modules/security/wrappers/default.nix +++ b/third_party/nixpkgs/nixos/modules/security/wrappers/default.nix @@ -202,7 +202,7 @@ in internal = true; description = lib.mdDoc '' This option defines the path to the wrapper programs. It - should not be overriden. + should not be overridden. ''; }; }; diff --git a/third_party/nixpkgs/nixos/modules/services/audio/icecast.nix b/third_party/nixpkgs/nixos/modules/services/audio/icecast.nix index f71a13b962..63049bd93a 100644 --- a/third_party/nixpkgs/nixos/modules/services/audio/icecast.nix +++ b/third_party/nixpkgs/nixos/modules/services/audio/icecast.nix @@ -48,7 +48,7 @@ in { hostname = mkOption { type = types.nullOr types.str; - description = lib.mdDoc "DNS name or IP address that will be used for the stream directory lookups or possibily the playlist generation if a Host header is not provided."; + description = lib.mdDoc "DNS name or IP address that will be used for the stream directory lookups or possibly the playlist generation if a Host header is not provided."; default = config.networking.domain; defaultText = literalExpression "config.networking.domain"; }; diff --git a/third_party/nixpkgs/nixos/modules/services/audio/roon-bridge.nix b/third_party/nixpkgs/nixos/modules/services/audio/roon-bridge.nix index db84ba2862..e9335091ba 100644 --- a/third_party/nixpkgs/nixos/modules/services/audio/roon-bridge.nix +++ b/third_party/nixpkgs/nixos/modules/services/audio/roon-bridge.nix @@ -53,13 +53,18 @@ in { networking.firewall = mkIf cfg.openFirewall { allowedTCPPortRanges = [{ from = 9100; to = 9200; }]; allowedUDPPorts = [ 9003 ]; - extraCommands = '' + extraCommands = optionalString (!config.networking.nftables.enable) '' iptables -A INPUT -s 224.0.0.0/4 -j ACCEPT iptables -A INPUT -d 224.0.0.0/4 -j ACCEPT iptables -A INPUT -s 240.0.0.0/5 -j ACCEPT iptables -A INPUT -m pkttype --pkt-type multicast -j ACCEPT iptables -A INPUT -m pkttype --pkt-type broadcast -j ACCEPT ''; + extraInputRules = optionalString config.networking.nftables.enable '' + ip saddr { 224.0.0.0/4, 240.0.0.0/5 } accept + ip daddr 224.0.0.0/4 accept + pkttype { multicast, broadcast } accept + ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/audio/roon-server.nix b/third_party/nixpkgs/nixos/modules/services/audio/roon-server.nix index 74cae909f5..fbe74f63b9 100644 --- a/third_party/nixpkgs/nixos/modules/services/audio/roon-server.nix +++ b/third_party/nixpkgs/nixos/modules/services/audio/roon-server.nix @@ -58,7 +58,7 @@ in { { from = 30000; to = 30010; } ]; allowedUDPPorts = [ 9003 ]; - extraCommands = '' + extraCommands = optionalString (!config.networking.nftables.enable) '' ## IGMP / Broadcast ## iptables -A INPUT -s 224.0.0.0/4 -j ACCEPT iptables -A INPUT -d 224.0.0.0/4 -j ACCEPT @@ -66,6 +66,11 @@ in { iptables -A INPUT -m pkttype --pkt-type multicast -j ACCEPT iptables -A INPUT -m pkttype --pkt-type broadcast -j ACCEPT ''; + extraInputRules = optionalString config.networking.nftables.enable '' + ip saddr { 224.0.0.0/4, 240.0.0.0/5 } accept + ip daddr 224.0.0.0/4 accept + pkttype { multicast, broadcast } accept + ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/backup/borgbackup.nix b/third_party/nixpkgs/nixos/modules/services/backup/borgbackup.nix index 0ae3d4180a..c5fc09dcea 100644 --- a/third_party/nixpkgs/nixos/modules/services/backup/borgbackup.nix +++ b/third_party/nixpkgs/nixos/modules/services/backup/borgbackup.nix @@ -11,7 +11,11 @@ let mkExcludeFile = cfg: # Write each exclude pattern to a new line - pkgs.writeText "excludefile" (concatStringsSep "\n" cfg.exclude); + pkgs.writeText "excludefile" (concatMapStrings (s: s + "\n") cfg.exclude); + + mkPatternsFile = cfg: + # Write each pattern to a new line + pkgs.writeText "patternsfile" (concatMapStrings (s: s + "\n") cfg.patterns); mkKeepArgs = cfg: # If cfg.prune.keep e.g. has a yearly attribute, @@ -47,6 +51,7 @@ let borg create $extraArgs \ --compression ${cfg.compression} \ --exclude-from ${mkExcludeFile cfg} \ + --patterns-from ${mkPatternsFile cfg} \ $extraCreateArgs \ "::$archiveName$archiveSuffix" \ ${if cfg.paths == null then "-" else escapeShellArgs cfg.paths} @@ -145,8 +150,9 @@ let # Ensure that the home directory already exists # We can't assert createHome == true because that's not the case for root cd "${config.users.users.${cfg.user}.home}" - ${install} -d .config/borg - ${install} -d .cache/borg + # Create each directory separately to prevent root owned parent dirs + ${install} -d .config .config/borg + ${install} -d .cache .cache/borg '' + optionalString (isLocalPath cfg.repo && !cfg.removableDevice) '' ${install} -d ${escapeShellArg cfg.repo} '')); @@ -441,6 +447,21 @@ in { ]; }; + patterns = mkOption { + type = with types; listOf str; + description = lib.mdDoc '' + Include/exclude paths matching the given patterns. The first + matching patterns is used, so if an include pattern (prefix `+`) + matches before an exclude pattern (prefix `-`), the file is + backed up. See [{command}`borg help patterns`](https://borgbackup.readthedocs.io/en/stable/usage/help.html#borg-patterns) for pattern syntax. + ''; + default = [ ]; + example = [ + "+ /home/susan" + "- /home/*" + ]; + }; + readWritePaths = mkOption { type = with types; listOf path; description = lib.mdDoc '' diff --git a/third_party/nixpkgs/nixos/modules/services/backup/zfs-replication.nix b/third_party/nixpkgs/nixos/modules/services/backup/zfs-replication.nix index f0267c4736..ce914003c6 100644 --- a/third_party/nixpkgs/nixos/modules/services/backup/zfs-replication.nix +++ b/third_party/nixpkgs/nixos/modules/services/backup/zfs-replication.nix @@ -12,7 +12,7 @@ in { enable = mkEnableOption (lib.mdDoc "ZFS snapshot replication."); followDelete = mkOption { - description = lib.mdDoc "Remove remote snapshots that don't have a local correspondant."; + description = lib.mdDoc "Remove remote snapshots that don't have a local correspondent."; default = true; type = types.bool; }; @@ -30,7 +30,7 @@ in { }; localFilesystem = mkOption { - description = lib.mdDoc "Local ZFS fileystem from which snapshots should be sent. Defaults to the attribute name."; + description = lib.mdDoc "Local ZFS filesystem from which snapshots should be sent. Defaults to the attribute name."; example = "pool/file/path"; type = types.str; }; diff --git a/third_party/nixpkgs/nixos/modules/services/backup/znapzend.nix b/third_party/nixpkgs/nixos/modules/services/backup/znapzend.nix index f8d741e3ad..76f147c18a 100644 --- a/third_party/nixpkgs/nixos/modules/services/backup/znapzend.nix +++ b/third_party/nixpkgs/nixos/modules/services/backup/znapzend.nix @@ -9,7 +9,7 @@ let The znapzend backup plan to use for the source. The plan specifies how often to backup and for how long to keep the - backups. It consists of a series of retention periodes to interval + backups. It consists of a series of retention periods to interval associations: ``` @@ -268,7 +268,7 @@ let mkSrcAttrs = srcCfg: with srcCfg; { enabled = onOff enable; - # mbuffer is not referenced by its full path to accomodate non-NixOS systems or differing mbuffer versions between source and target + # mbuffer is not referenced by its full path to accommodate non-NixOS systems or differing mbuffer versions between source and target mbuffer = with mbuffer; if enable then "mbuffer" + optionalString (port != null) ":${toString port}" else "off"; mbuffer_size = mbuffer.size; @@ -372,7 +372,7 @@ in compressed feature which adds the options `-Lce` to the {command}`zfs send` command. When this is enabled, make sure that both the sending and receiving pool have the same relevant - features enabled. Using `-c` will skip unneccessary + features enabled. Using `-c` will skip unnecessary decompress-compress stages, `-L` is for large block support and -e is for embedded data support. see {manpage}`znapzend(1)` diff --git a/third_party/nixpkgs/nixos/modules/services/blockchain/ethereum/lighthouse.nix b/third_party/nixpkgs/nixos/modules/services/blockchain/ethereum/lighthouse.nix index 20a4ead689..863e737d90 100644 --- a/third_party/nixpkgs/nixos/modules/services/blockchain/ethereum/lighthouse.nix +++ b/third_party/nixpkgs/nixos/modules/services/blockchain/ethereum/lighthouse.nix @@ -51,7 +51,7 @@ in { type = types.bool; default = false; description = lib.mdDoc '' - Explictly disables syncing of deposit logs from the execution node. + Explicitly disables syncing of deposit logs from the execution node. This overrides any previous option that depends on it. Useful if you intend to run a non-validating beacon node. ''; @@ -280,7 +280,7 @@ in { ${pkgs.lighthouse}/bin/lighthouse validator_client \ --network ${cfg.network} \ --beacon-nodes ${lib.concatStringsSep "," cfg.validator.beaconNodes} \ - --datadir ${cfg.validator.dataDir}/${cfg.network} + --datadir ${cfg.validator.dataDir}/${cfg.network} \ ${optionalString cfg.validator.metrics.enable ''--metrics --metrics-address ${cfg.validator.metrics.address} --metrics-port ${toString cfg.validator.metrics.port}''} \ ${cfg.extraArgs} ${cfg.validator.extraArgs} ''; diff --git a/third_party/nixpkgs/nixos/modules/services/cluster/kubernetes/addon-manager.nix b/third_party/nixpkgs/nixos/modules/services/cluster/kubernetes/addon-manager.nix index d6b3428908..7aa2a8323b 100644 --- a/third_party/nixpkgs/nixos/modules/services/cluster/kubernetes/addon-manager.nix +++ b/third_party/nixpkgs/nixos/modules/services/cluster/kubernetes/addon-manager.nix @@ -22,7 +22,7 @@ in bootstrapAddons = mkOption { description = lib.mdDoc '' - Bootstrap addons are like regular addons, but they are applied with cluster-admin rigths. + Bootstrap addons are like regular addons, but they are applied with cluster-admin rights. They are applied at addon-manager startup only. ''; default = { }; diff --git a/third_party/nixpkgs/nixos/modules/services/cluster/kubernetes/pki.nix b/third_party/nixpkgs/nixos/modules/services/cluster/kubernetes/pki.nix index d68267883e..26fe0f5e9e 100644 --- a/third_party/nixpkgs/nixos/modules/services/cluster/kubernetes/pki.nix +++ b/third_party/nixpkgs/nixos/modules/services/cluster/kubernetes/pki.nix @@ -323,7 +323,7 @@ in systemctl restart flannel ''} - echo "Node joined succesfully" + echo "Node joined successfully" '')]; # isolate etcd on loopback at the master node diff --git a/third_party/nixpkgs/nixos/modules/services/continuous-integration/buildbot/master.nix b/third_party/nixpkgs/nixos/modules/services/continuous-integration/buildbot/master.nix index 680b21dbf2..5666199c48 100644 --- a/third_party/nixpkgs/nixos/modules/services/continuous-integration/buildbot/master.nix +++ b/third_party/nixpkgs/nixos/modules/services/continuous-integration/buildbot/master.nix @@ -1,4 +1,4 @@ -# NixOS module for Buildbot continous integration server. +# NixOS module for Buildbot continuous integration server. { config, lib, options, pkgs, ... }: diff --git a/third_party/nixpkgs/nixos/modules/services/continuous-integration/github-runner/options.nix b/third_party/nixpkgs/nixos/modules/services/continuous-integration/github-runner/options.nix index 796b5a7f11..72ac0c1299 100644 --- a/third_party/nixpkgs/nixos/modules/services/continuous-integration/github-runner/options.nix +++ b/third_party/nixpkgs/nixos/modules/services/continuous-integration/github-runner/options.nix @@ -49,7 +49,7 @@ with lib; registration token on startup as needed. Make sure the PAT has a scope of `admin:org` for organization-wide registrations or a scope of `repo` for a single repository. Fine-grained PATs need read and write permission - to the "Adminstration" resources. + to the "Administration" resources. Changing this option or the file's content triggers a new runner registration. ''; diff --git a/third_party/nixpkgs/nixos/modules/services/continuous-integration/gitlab-runner.nix b/third_party/nixpkgs/nixos/modules/services/continuous-integration/gitlab-runner.nix index 2050e04d55..7b1c4da862 100644 --- a/third_party/nixpkgs/nixos/modules/services/continuous-integration/gitlab-runner.nix +++ b/third_party/nixpkgs/nixos/modules/services/continuous-integration/gitlab-runner.nix @@ -141,7 +141,7 @@ in default = false; description = lib.mdDoc '' Finish all remaining jobs before stopping. - If not set gitlab-runner will stop immediatly without waiting + If not set gitlab-runner will stop immediately without waiting for jobs to finish, which will lead to failed builds. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/continuous-integration/hail.nix b/third_party/nixpkgs/nixos/modules/services/continuous-integration/hail.nix index 76d7356e24..62e8b8077c 100644 --- a/third_party/nixpkgs/nixos/modules/services/continuous-integration/hail.nix +++ b/third_party/nixpkgs/nixos/modules/services/continuous-integration/hail.nix @@ -15,8 +15,8 @@ in { default = false; description = lib.mdDoc '' Enables the Hail Auto Update Service. Hail can automatically deploy artifacts - built by a Hydra Continous Integration server. A common use case is to provide - continous deployment for single services or a full NixOS configuration.''; + built by a Hydra Continuous Integration server. A common use case is to provide + continuous deployment for single services or a full NixOS configuration.''; }; profile = mkOption { type = types.str; diff --git a/third_party/nixpkgs/nixos/modules/services/databases/firebird.nix b/third_party/nixpkgs/nixos/modules/services/databases/firebird.nix index b2c4a5dd8f..4c28553453 100644 --- a/third_party/nixpkgs/nixos/modules/services/databases/firebird.nix +++ b/third_party/nixpkgs/nixos/modules/services/databases/firebird.nix @@ -14,7 +14,7 @@ # # Be careful, virtuoso-opensource also provides a different isql command ! -# There are at least two ways to run firebird. superserver has been choosen +# There are at least two ways to run firebird. superserver has been chosen # however there are no strong reasons to prefer this or the other one AFAIK # Eg superserver is said to be most efficiently using resources according to # http://www.firebirdsql.org/manual/qsg25-classic-or-super.html diff --git a/third_party/nixpkgs/nixos/modules/services/databases/postgresql.nix b/third_party/nixpkgs/nixos/modules/services/databases/postgresql.nix index fe7ef48075..6665e7a088 100644 --- a/third_party/nixpkgs/nixos/modules/services/databases/postgresql.nix +++ b/third_party/nixpkgs/nixos/modules/services/databases/postgresql.nix @@ -146,6 +146,7 @@ in Name of the user to ensure. ''; }; + ensurePermissions = mkOption { type = types.attrsOf types.str; default = {}; @@ -167,6 +168,154 @@ in } ''; }; + + ensureClauses = mkOption { + description = lib.mdDoc '' + An attrset of clauses to grant to the user. Under the hood this uses the + [ALTER USER syntax](https://www.postgresql.org/docs/current/sql-alteruser.html) for each attrName where + the attrValue is true in the attrSet: + `ALTER USER user.name WITH attrName` + ''; + example = literalExpression '' + { + superuser = true; + createrole = true; + createdb = true; + } + ''; + default = {}; + defaultText = lib.literalMD '' + The default, `null`, means that the user created will have the default permissions assigned by PostgreSQL. Subsequent server starts will not set or unset the clause, so imperative changes are preserved. + ''; + type = types.submodule { + options = let + defaultText = lib.literalMD '' + `null`: do not set. For newly created roles, use PostgreSQL's default. For existing roles, do not touch this clause. + ''; + in { + superuser = mkOption { + type = types.nullOr types.bool; + description = lib.mdDoc '' + Grants the user, created by the ensureUser attr, superuser permissions. From the postgres docs: + + A database superuser bypasses all permission checks, + except the right to log in. This is a dangerous privilege + and should not be used carelessly; it is best to do most + of your work as a role that is not a superuser. To create + a new database superuser, use CREATE ROLE name SUPERUSER. + You must do this as a role that is already a superuser. + + More information on postgres roles can be found [here](https://www.postgresql.org/docs/current/role-attributes.html) + ''; + default = null; + inherit defaultText; + }; + createrole = mkOption { + type = types.nullOr types.bool; + description = lib.mdDoc '' + Grants the user, created by the ensureUser attr, createrole permissions. From the postgres docs: + + A role must be explicitly given permission to create more + roles (except for superusers, since those bypass all + permission checks). To create such a role, use CREATE + ROLE name CREATEROLE. A role with CREATEROLE privilege + can alter and drop other roles, too, as well as grant or + revoke membership in them. However, to create, alter, + drop, or change membership of a superuser role, superuser + status is required; CREATEROLE is insufficient for that. + + More information on postgres roles can be found [here](https://www.postgresql.org/docs/current/role-attributes.html) + ''; + default = null; + inherit defaultText; + }; + createdb = mkOption { + type = types.nullOr types.bool; + description = lib.mdDoc '' + Grants the user, created by the ensureUser attr, createdb permissions. From the postgres docs: + + A role must be explicitly given permission to create + databases (except for superusers, since those bypass all + permission checks). To create such a role, use CREATE + ROLE name CREATEDB. + + More information on postgres roles can be found [here](https://www.postgresql.org/docs/current/role-attributes.html) + ''; + default = null; + inherit defaultText; + }; + "inherit" = mkOption { + type = types.nullOr types.bool; + description = lib.mdDoc '' + Grants the user created inherit permissions. From the postgres docs: + + A role is given permission to inherit the privileges of + roles it is a member of, by default. However, to create a + role without the permission, use CREATE ROLE name + NOINHERIT. + + More information on postgres roles can be found [here](https://www.postgresql.org/docs/current/role-attributes.html) + ''; + default = null; + inherit defaultText; + }; + login = mkOption { + type = types.nullOr types.bool; + description = lib.mdDoc '' + Grants the user, created by the ensureUser attr, login permissions. From the postgres docs: + + Only roles that have the LOGIN attribute can be used as + the initial role name for a database connection. A role + with the LOGIN attribute can be considered the same as a + “database user”. To create a role with login privilege, + use either: + + CREATE ROLE name LOGIN; CREATE USER name; + + (CREATE USER is equivalent to CREATE ROLE except that + CREATE USER includes LOGIN by default, while CREATE ROLE + does not.) + + More information on postgres roles can be found [here](https://www.postgresql.org/docs/current/role-attributes.html) + ''; + default = null; + inherit defaultText; + }; + replication = mkOption { + type = types.nullOr types.bool; + description = lib.mdDoc '' + Grants the user, created by the ensureUser attr, replication permissions. From the postgres docs: + + A role must explicitly be given permission to initiate + streaming replication (except for superusers, since those + bypass all permission checks). A role used for streaming + replication must have LOGIN permission as well. To create + such a role, use CREATE ROLE name REPLICATION LOGIN. + + More information on postgres roles can be found [here](https://www.postgresql.org/docs/current/role-attributes.html) + ''; + default = null; + inherit defaultText; + }; + bypassrls = mkOption { + type = types.nullOr types.bool; + description = lib.mdDoc '' + Grants the user, created by the ensureUser attr, replication permissions. From the postgres docs: + + A role must be explicitly given permission to bypass + every row-level security (RLS) policy (except for + superusers, since those bypass all permission checks). To + create such a role, use CREATE ROLE name BYPASSRLS as a + superuser. + + More information on postgres roles can be found [here](https://www.postgresql.org/docs/current/role-attributes.html) + ''; + default = null; + inherit defaultText; + }; + }; + }; + }; }; }); default = []; @@ -380,12 +529,29 @@ in $PSQL -tAc "SELECT 1 FROM pg_database WHERE datname = '${database}'" | grep -q 1 || $PSQL -tAc 'CREATE DATABASE "${database}"' '') cfg.ensureDatabases} '' + '' - ${concatMapStrings (user: '' - $PSQL -tAc "SELECT 1 FROM pg_roles WHERE rolname='${user.name}'" | grep -q 1 || $PSQL -tAc 'CREATE USER "${user.name}"' - ${concatStringsSep "\n" (mapAttrsToList (database: permission: '' - $PSQL -tAc 'GRANT ${permission} ON ${database} TO "${user.name}"' - '') user.ensurePermissions)} - '') cfg.ensureUsers} + ${ + concatMapStrings + (user: + let + userPermissions = concatStringsSep "\n" + (mapAttrsToList + (database: permission: ''$PSQL -tAc 'GRANT ${permission} ON ${database} TO "${user.name}"' '') + user.ensurePermissions + ); + + filteredClauses = filterAttrs (name: value: value != null) user.ensureClauses; + + clauseSqlStatements = attrValues (mapAttrs (n: v: if v then n else "no${n}") filteredClauses); + + userClauses = ''$PSQL -tAc 'ALTER ROLE "${user.name}" ${concatStringsSep " " clauseSqlStatements}' ''; + in '' + $PSQL -tAc "SELECT 1 FROM pg_roles WHERE rolname='${user.name}'" | grep -q 1 || $PSQL -tAc 'CREATE USER "${user.name}"' + ${userPermissions} + ${userClauses} + '' + ) + cfg.ensureUsers + } ''; serviceConfig = mkMerge [ diff --git a/third_party/nixpkgs/nixos/modules/services/display-managers/greetd.nix b/third_party/nixpkgs/nixos/modules/services/display-managers/greetd.nix index fa3f8fdf4f..3a0f59f62a 100644 --- a/third_party/nixpkgs/nixos/modules/services/display-managers/greetd.nix +++ b/third_party/nixpkgs/nixos/modules/services/display-managers/greetd.nix @@ -45,7 +45,7 @@ in default = !(cfg.settings ? initial_session); defaultText = literalExpression "!(config.services.greetd.settings ? initial_session)"; description = lib.mdDoc '' - Wether to restart greetd when it terminates (e.g. on failure). + Whether to restart greetd when it terminates (e.g. on failure). This is usually desirable so a user can always log in, but should be disabled when using 'settings.initial_session' (autologin), because every greetd restart will trigger the autologin again. ''; @@ -89,6 +89,8 @@ in SendSIGHUP = true; TimeoutStopSec = "30s"; KeyringMode = "shared"; + + Type = "idle"; }; # Don't kill a user session when using nixos-rebuild diff --git a/third_party/nixpkgs/nixos/modules/services/games/asf.nix b/third_party/nixpkgs/nixos/modules/services/games/asf.nix index d3f7883421..7585d56b2d 100644 --- a/third_party/nixpkgs/nixos/modules/services/games/asf.nix +++ b/third_party/nixpkgs/nixos/modules/services/games/asf.nix @@ -35,7 +35,7 @@ in description = lib.mdDoc '' If enabled, starts the ArchisSteamFarm service. For configuring the SteamGuard token you will need to use the web-ui, which is enabled by default over on 127.0.0.1:1242. - You cannot configure ASF in any way outside of nix, since all the config files get wiped on restart and replaced with the programatically set ones by nix. + You cannot configure ASF in any way outside of nix, since all the config files get wiped on restart and replaced with the programnatically set ones by nix. ''; default = false; }; @@ -98,7 +98,7 @@ in ipcPasswordFile = mkOption { type = types.nullOr types.path; default = null; - description = lib.mdDoc "Path to a file containig the password. The file must be readable by the `asf` user/group."; + description = lib.mdDoc "Path to a file containing the password. The file must be readable by the `asf` user/group."; }; ipcSettings = mkOption { @@ -129,7 +129,7 @@ in }; passwordFile = mkOption { type = types.path; - description = lib.mdDoc "Path to a file containig the password. The file must be readable by the `asf` user/group."; + description = lib.mdDoc "Path to a file containing the password. The file must be readable by the `asf` user/group."; }; enabled = mkOption { type = types.bool; diff --git a/third_party/nixpkgs/nixos/modules/services/games/minetest-server.nix b/third_party/nixpkgs/nixos/modules/services/games/minetest-server.nix index 34e0ba8c8e..e8c9688167 100644 --- a/third_party/nixpkgs/nixos/modules/services/games/minetest-server.nix +++ b/third_party/nixpkgs/nixos/modules/services/games/minetest-server.nix @@ -62,7 +62,7 @@ in Path to logfile for logging. If set to null, logging will be output to stdout which means - all output will be catched by systemd. + all output will be caught by systemd. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/hardware/lirc.nix b/third_party/nixpkgs/nixos/modules/services/hardware/lirc.nix index acc43cd418..5b1a8d10c7 100644 --- a/third_party/nixpkgs/nixos/modules/services/hardware/lirc.nix +++ b/third_party/nixpkgs/nixos/modules/services/hardware/lirc.nix @@ -19,7 +19,7 @@ in { [lircd] nodaemon = False ''; - description = lib.mdDoc "LIRC default options descriped in man:lircd(8) ({file}`lirc_options.conf`)"; + description = lib.mdDoc "LIRC default options described in man:lircd(8) ({file}`lirc_options.conf`)"; }; configs = mkOption { diff --git a/third_party/nixpkgs/nixos/modules/services/hardware/sane.nix b/third_party/nixpkgs/nixos/modules/services/hardware/sane.nix index fe6dd268df..2cac2e8e8b 100644 --- a/third_party/nixpkgs/nixos/modules/services/hardware/sane.nix +++ b/third_party/nixpkgs/nixos/modules/services/hardware/sane.nix @@ -28,7 +28,7 @@ let }; env = { - SANE_CONFIG_DIR = "/etc/sane.d"; + SANE_CONFIG_DIR = "/etc/sane-config"; LD_LIBRARY_PATH = [ "/etc/sane-libs" ]; }; @@ -141,7 +141,7 @@ in description = lib.mdDoc '' Enable saned network daemon for remote connection to scanners. - saned would be runned from `scanner` user; to allow + saned would be run from `scanner` user; to allow access to hardware that doesn't have `scanner` group you should add needed groups to this user. ''; @@ -167,7 +167,7 @@ in environment.systemPackages = backends; environment.sessionVariables = env; - environment.etc."sane.d".source = config.hardware.sane.configDir; + environment.etc."sane-config".source = config.hardware.sane.configDir; environment.etc."sane-libs".source = "${saneConfig}/lib/sane"; services.udev.packages = backends; diff --git a/third_party/nixpkgs/nixos/modules/services/hardware/usbmuxd.nix b/third_party/nixpkgs/nixos/modules/services/hardware/usbmuxd.nix index b4c954906d..9466ea2699 100644 --- a/third_party/nixpkgs/nixos/modules/services/hardware/usbmuxd.nix +++ b/third_party/nixpkgs/nixos/modules/services/hardware/usbmuxd.nix @@ -13,6 +13,7 @@ in { options.services.usbmuxd = { + enable = mkOption { type = types.bool; default = false; @@ -39,6 +40,15 @@ in The group usbmuxd should use to run after startup. ''; }; + + package = mkOption { + type = types.package; + default = pkgs.usbmuxd; + defaultText = literalExpression "pkgs.usbmuxd"; + description = lib.mdDoc "Which package to use for the usbmuxd daemon."; + relatedPackages = [ "usbmuxd" "usbmuxd2" ]; + }; + }; config = mkIf cfg.enable { @@ -68,7 +78,7 @@ in # Trigger the udev rule manually. This doesn't require replugging the # device when first enabling the option to get it to work ExecStartPre = "${pkgs.udev}/bin/udevadm trigger -s usb -a idVendor=${apple}"; - ExecStart = "${pkgs.usbmuxd}/bin/usbmuxd -U ${cfg.user} -f"; + ExecStart = "${cfg.package}/bin/usbmuxd -U ${cfg.user} -v"; }; }; diff --git a/third_party/nixpkgs/nixos/modules/services/logging/logrotate.nix b/third_party/nixpkgs/nixos/modules/services/logging/logrotate.nix index fd41b98267..1799e9282b 100644 --- a/third_party/nixpkgs/nixos/modules/services/logging/logrotate.nix +++ b/third_party/nixpkgs/nixos/modules/services/logging/logrotate.nix @@ -163,7 +163,7 @@ in default = null; description = lib.mdDoc '' How often to rotate the logs. Defaults to previously set global setting, - which itself defauts to weekly. + which itself defaults to weekly. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/mail/exim.nix b/third_party/nixpkgs/nixos/modules/services/mail/exim.nix index cd0da4fc50..a9504acee3 100644 --- a/third_party/nixpkgs/nixos/modules/services/mail/exim.nix +++ b/third_party/nixpkgs/nixos/modules/services/mail/exim.nix @@ -116,8 +116,9 @@ in wantedBy = [ "multi-user.target" ]; restartTriggers = [ config.environment.etc."exim.conf".source ]; serviceConfig = { - ExecStart = "${cfg.package}/bin/exim -bdf -q${cfg.queueRunnerInterval}"; - ExecReload = "${coreutils}/bin/kill -HUP $MAINPID"; + ExecStart = "+${cfg.package}/bin/exim -bdf -q${cfg.queueRunnerInterval}"; + ExecReload = "+${coreutils}/bin/kill -HUP $MAINPID"; + User = cfg.user; }; preStart = '' if ! test -d ${cfg.spoolDir}; then diff --git a/third_party/nixpkgs/nixos/modules/services/mail/mailman.nix b/third_party/nixpkgs/nixos/modules/services/mail/mailman.nix index 5edcd313a9..0ca87696b1 100644 --- a/third_party/nixpkgs/nixos/modules/services/mail/mailman.nix +++ b/third_party/nixpkgs/nixos/modules/services/mail/mailman.nix @@ -113,7 +113,7 @@ in { type = types.str; example = "/run/secrets/ldap-bind"; description = lib.mdDoc '' - Path to the file containing the bind password of the servie account + Path to the file containing the bind password of the service account defined by [](#opt-services.mailman.ldap.bindDn). ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/mail/postfix.nix b/third_party/nixpkgs/nixos/modules/services/mail/postfix.nix index 5461e89a80..d01734d61e 100644 --- a/third_party/nixpkgs/nixos/modules/services/mail/postfix.nix +++ b/third_party/nixpkgs/nixos/modules/services/mail/postfix.nix @@ -234,12 +234,12 @@ let headerChecks = concatStringsSep "\n" (map (x: "${x.pattern} ${x.action}") cfg.headerChecks) + cfg.extraHeaderChecks; - aliases = let seperator = if cfg.aliasMapType == "hash" then ":" else ""; in + aliases = let separator = if cfg.aliasMapType == "hash" then ":" else ""; in optionalString (cfg.postmasterAlias != "") '' - postmaster${seperator} ${cfg.postmasterAlias} + postmaster${separator} ${cfg.postmasterAlias} '' + optionalString (cfg.rootAlias != "") '' - root${seperator} ${cfg.rootAlias} + root${separator} ${cfg.rootAlias} '' + cfg.extraAliases ; diff --git a/third_party/nixpkgs/nixos/modules/services/mail/public-inbox.nix b/third_party/nixpkgs/nixos/modules/services/mail/public-inbox.nix index ab7ff5f726..9cd6726e6c 100644 --- a/third_party/nixpkgs/nixos/modules/services/mail/public-inbox.nix +++ b/third_party/nixpkgs/nixos/modules/services/mail/public-inbox.nix @@ -275,7 +275,11 @@ in default = {}; description = lib.mdDoc "public inboxes"; type = types.submodule { - freeformType = with types; /*inbox name*/attrsOf (/*inbox option name*/attrsOf /*inbox option value*/iniAtom); + # Keeping in line with the tradition of unnecessarily specific types, allow users to set + # freeform settings either globally under the `publicinbox` section, or for specific + # inboxes through additional nesting. + freeformType = with types; attrsOf (oneOf [ iniAtom (attrsOf iniAtom) ]); + options.css = mkOption { type = with types; listOf str; default = []; diff --git a/third_party/nixpkgs/nixos/modules/services/mail/roundcube.nix b/third_party/nixpkgs/nixos/modules/services/mail/roundcube.nix index d8adf53e48..e05820fb87 100644 --- a/third_party/nixpkgs/nixos/modules/services/mail/roundcube.nix +++ b/third_party/nixpkgs/nixos/modules/services/mail/roundcube.nix @@ -39,7 +39,7 @@ in ''; description = lib.mdDoc '' - The package which contains roundcube's sources. Can be overriden to create + The package which contains roundcube's sources. Can be overridden to create an environment which contains roundcube and third-party plugins. ''; }; @@ -92,7 +92,7 @@ in default = []; example = literalExpression "with pkgs.aspellDicts; [ en fr de ]"; description = lib.mdDoc '' - List of aspell dictionnaries for spell checking. If empty, spell checking is disabled. + List of aspell dictionaries for spell checking. If empty, spell checking is disabled. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/matrix/mautrix-telegram.nix b/third_party/nixpkgs/nixos/modules/services/matrix/mautrix-telegram.nix index 2d9c2dc76c..5a632fd27e 100644 --- a/third_party/nixpkgs/nixos/modules/services/matrix/mautrix-telegram.nix +++ b/third_party/nixpkgs/nixos/modules/services/matrix/mautrix-telegram.nix @@ -105,7 +105,7 @@ in { `MAUTRIX_TELEGRAM_TELEGRAM_BOT_TOKEN`. These environment variables can also be used to set other options by - replacing hierachy levels by `.`, converting the name to uppercase + replacing hierarchy levels by `.`, converting the name to uppercase and prepending `MAUTRIX_TELEGRAM_`. For example, the first value above maps to {option}`settings.appservice.as_token`. @@ -140,7 +140,7 @@ in { path = [ pkgs.lottieconverter ]; # mautrix-telegram tries to generate a dotfile in the home directory of - # the running user if using a postgresql databse: + # the running user if using a postgresql database: # # File "python3.10/site-packages/asyncpg/connect_utils.py", line 257, in _dot_postgre> # return (pathlib.Path.home() / '.postgresql' / filename).resolve() diff --git a/third_party/nixpkgs/nixos/modules/services/matrix/synapse.nix b/third_party/nixpkgs/nixos/modules/services/matrix/synapse.nix index a80d4cabfe..3087d879b9 100644 --- a/third_party/nixpkgs/nixos/modules/services/matrix/synapse.nix +++ b/third_party/nixpkgs/nixos/modules/services/matrix/synapse.nix @@ -80,7 +80,7 @@ in { (mkRemovedOptionModule [ "services" "matrix-synapse" "user_creation_max_duration" ] "It is no longer supported by synapse." ) (mkRemovedOptionModule [ "services" "matrix-synapse" "verbose" ] "Use a log config instead." ) - # options that were moved into rfc42 style settigns + # options that were moved into rfc42 style settings (mkRemovedOptionModule [ "services" "matrix-synapse" "app_service_config_files" ] "Use settings.app_service_config_files instead" ) (mkRemovedOptionModule [ "services" "matrix-synapse" "database_args" ] "Use settings.database.args instead" ) (mkRemovedOptionModule [ "services" "matrix-synapse" "database_name" ] "Use settings.database.args.database instead" ) @@ -507,6 +507,12 @@ in { sqlite3 = null; psycopg2 = "matrix-synapse"; }.${cfg.settings.database.name}; + defaultText = lib.literalExpression '' + { + sqlite3 = null; + psycopg2 = "matrix-synapse"; + }.''${cfg.settings.database.name}; + ''; description = lib.mdDoc '' Username to connect with psycopg2, set to null when using sqlite3. diff --git a/third_party/nixpkgs/nixos/modules/services/misc/dysnomia.nix b/third_party/nixpkgs/nixos/modules/services/misc/dysnomia.nix index 4d748ec6eb..0f92265ccb 100644 --- a/third_party/nixpkgs/nixos/modules/services/misc/dysnomia.nix +++ b/third_party/nixpkgs/nixos/modules/services/misc/dysnomia.nix @@ -114,7 +114,7 @@ in }; components = mkOption { - description = lib.mdDoc "An atttribute set in which each key represents a container and each value an attribute set in which each key represents a component and each value a derivation constructing its initial state"; + description = lib.mdDoc "An attribute set in which each key represents a container and each value an attribute set in which each key represents a component and each value a derivation constructing its initial state"; default = {}; type = types.attrsOf types.attrs; }; diff --git a/third_party/nixpkgs/nixos/modules/services/misc/gammu-smsd.nix b/third_party/nixpkgs/nixos/modules/services/misc/gammu-smsd.nix index 2c7d90b28d..83f4efe695 100644 --- a/third_party/nixpkgs/nixos/modules/services/misc/gammu-smsd.nix +++ b/third_party/nixpkgs/nixos/modules/services/misc/gammu-smsd.nix @@ -192,7 +192,7 @@ in { password = mkOption { type = types.nullOr types.str; default = null; - description = lib.mdDoc "User password used for connetion to the database"; + description = lib.mdDoc "User password used for connection to the database"; }; }; }; diff --git a/third_party/nixpkgs/nixos/modules/services/misc/gitea.nix b/third_party/nixpkgs/nixos/modules/services/misc/gitea.nix index d29416eda2..ceb4c11728 100644 --- a/third_party/nixpkgs/nixos/modules/services/misc/gitea.nix +++ b/third_party/nixpkgs/nixos/modules/services/misc/gitea.nix @@ -183,7 +183,7 @@ in file = mkOption { type = types.nullOr types.str; default = null; - description = lib.mdDoc "Filename to be used for the dump. If `null` a default name is choosen by gitea."; + description = lib.mdDoc "Filename to be used for the dump. If `null` a default name is chosen by gitea."; example = "gitea-dump"; }; }; @@ -487,7 +487,7 @@ in # In older versions the secret naming for JWT was kind of confusing. # The file jwt_secret hold the value for LFS_JWT_SECRET and JWT_SECRET - # wasn't persistant at all. + # wasn't persistent at all. # To fix that, there is now the file oauth2_jwt_secret containing the # values for JWT_SECRET and the file jwt_secret gets renamed to # lfs_jwt_secret. diff --git a/third_party/nixpkgs/nixos/modules/services/misc/gitlab.xml b/third_party/nixpkgs/nixos/modules/services/misc/gitlab.xml index 40424c5039..9816fdac7d 100644 --- a/third_party/nixpkgs/nixos/modules/services/misc/gitlab.xml +++ b/third_party/nixpkgs/nixos/modules/services/misc/gitlab.xml @@ -141,7 +141,7 @@ services.gitlab = { - A list of all availabe rake tasks can be obtained by running: + A list of all available rake tasks can be obtained by running: $ sudo -u git -H gitlab-rake -T diff --git a/third_party/nixpkgs/nixos/modules/services/misc/jellyfin.nix b/third_party/nixpkgs/nixos/modules/services/misc/jellyfin.nix index f49657a075..2a4483199d 100644 --- a/third_party/nixpkgs/nixos/modules/services/misc/jellyfin.nix +++ b/third_party/nixpkgs/nixos/modules/services/misc/jellyfin.nix @@ -81,7 +81,7 @@ in ProtectKernelTunables = !config.boot.isContainer; LockPersonality = true; PrivateTmp = !config.boot.isContainer; - # needed for hardware accelaration + # needed for hardware acceleration PrivateDevices = false; PrivateUsers = true; RemoveIPC = true; diff --git a/third_party/nixpkgs/nixos/modules/services/misc/nitter.nix b/third_party/nixpkgs/nixos/modules/services/misc/nitter.nix index 95394d9d21..f0cb5cc151 100644 --- a/third_party/nixpkgs/nixos/modules/services/misc/nitter.nix +++ b/third_party/nixpkgs/nixos/modules/services/misc/nitter.nix @@ -47,7 +47,7 @@ in { options = { services.nitter = { - enable = mkEnableOption (lib.mdDoc "If enabled, start Nitter."); + enable = mkEnableOption (lib.mdDoc "Nitter"); package = mkOption { default = pkgs.nitter; diff --git a/third_party/nixpkgs/nixos/modules/services/misc/nix-daemon.nix b/third_party/nixpkgs/nixos/modules/services/misc/nix-daemon.nix index c88fceb9a9..10db7cdfb3 100644 --- a/third_party/nixpkgs/nixos/modules/services/misc/nix-daemon.nix +++ b/third_party/nixpkgs/nixos/modules/services/misc/nix-daemon.nix @@ -42,7 +42,7 @@ let else if isDerivation v then toString v else if builtins.isPath v then toString v else if isString v then v - else if isCoercibleToString v then toString v + else if strings.isCoercibleToString v then toString v else abort "The nix conf value: ${toPretty {} v} can not be encoded"; mkKeyValue = k: v: "${escape [ "=" ] k} = ${mkValueString v}"; @@ -609,7 +609,7 @@ in By default, pseudo-features `nixos-test`, `benchmark`, and `big-parallel` used in Nixpkgs are set, `kvm` - is also included in it is avaliable. + is also included if it is available. ''; }; @@ -642,7 +642,7 @@ in description = lib.mdDoc '' Configuration for Nix, see or - {manpage}`nix.conf(5)` for avalaible options. + {manpage}`nix.conf(5)` for available options. The value declared here will be translated directly to the key-value pairs Nix expects. You can use {command}`nix-instantiate --eval --strict '' -A config.nix.settings` @@ -819,7 +819,7 @@ in optionals (pkgs.hostPlatform ? gcc.arch) ( # a builder can run code for `gcc.arch` and inferior architectures [ "gccarch-${pkgs.hostPlatform.gcc.arch}" ] ++ - map (x: "gccarch-${x}") systems.architectures.inferiors.${pkgs.hostPlatform.gcc.arch} + map (x: "gccarch-${x}") (systems.architectures.inferiors.${pkgs.hostPlatform.gcc.arch} or []) ) ); } diff --git a/third_party/nixpkgs/nixos/modules/services/misc/paperless.nix b/third_party/nixpkgs/nixos/modules/services/misc/paperless.nix index 6a98d5cb68..33a8394dff 100644 --- a/third_party/nixpkgs/nixos/modules/services/misc/paperless.nix +++ b/third_party/nixpkgs/nixos/modules/services/misc/paperless.nix @@ -211,19 +211,15 @@ in ]; systemd.services.paperless-scheduler = { - description = "Paperless scheduler"; + description = "Paperless Celery Beat"; serviceConfig = defaultServiceConfig // { User = cfg.user; - ExecStart = "${pkg}/bin/paperless-ngx qcluster"; + ExecStart = "${pkg}/bin/celery --app paperless beat --loglevel INFO"; Restart = "on-failure"; - # The `mbind` syscall is needed for running the classifier. - SystemCallFilter = defaultServiceConfig.SystemCallFilter ++ [ "mbind" ]; - # Needs to talk to mail server for automated import rules - PrivateNetwork = false; }; environment = env; wantedBy = [ "multi-user.target" ]; - wants = [ "paperless-consumer.service" "paperless-web.service" ]; + wants = [ "paperless-consumer.service" "paperless-web.service" "paperless-task-queue.service" ]; preStart = '' ln -sf ${manage} ${cfg.dataDir}/paperless-manage @@ -250,6 +246,20 @@ in after = [ "redis-paperless.service" ]; }; + systemd.services.paperless-task-queue = { + description = "Paperless Celery Workers"; + serviceConfig = defaultServiceConfig // { + User = cfg.user; + ExecStart = "${pkg}/bin/celery --app paperless worker --loglevel INFO"; + Restart = "on-failure"; + # The `mbind` syscall is needed for running the classifier. + SystemCallFilter = defaultServiceConfig.SystemCallFilter ++ [ "mbind" ]; + # Needs to talk to mail server for automated import rules + PrivateNetwork = false; + }; + environment = env; + }; + # Reading the user-provided password file requires root access systemd.services.paperless-copy-password = mkIf (cfg.passwordFile != null) { requiredBy = [ "paperless-scheduler.service" ]; @@ -301,7 +311,7 @@ in }; # Allow the web interface to access the private /tmp directory of the server. # This is required to support uploading files via the web interface. - unitConfig.JoinsNamespaceOf = "paperless-scheduler.service"; + unitConfig.JoinsNamespaceOf = "paperless-task-queue.service"; # Bind to `paperless-scheduler` so that the web server never runs # during migrations bindsTo = [ "paperless-scheduler.service" ]; diff --git a/third_party/nixpkgs/nixos/modules/services/misc/podgrab.nix b/third_party/nixpkgs/nixos/modules/services/misc/podgrab.nix index c0a1247185..c596122fd3 100644 --- a/third_party/nixpkgs/nixos/modules/services/misc/podgrab.nix +++ b/third_party/nixpkgs/nixos/modules/services/misc/podgrab.nix @@ -12,7 +12,7 @@ in example = "/run/secrets/password.env"; description = lib.mdDoc '' The path to a file containing the PASSWORD environment variable - definition for Podgrab's authentification. + definition for Podgrab's authentication. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/misc/portunus.nix b/third_party/nixpkgs/nixos/modules/services/misc/portunus.nix index 1dae605e46..f60cbe3477 100644 --- a/third_party/nixpkgs/nixos/modules/services/misc/portunus.nix +++ b/third_party/nixpkgs/nixos/modules/services/misc/portunus.nix @@ -135,7 +135,7 @@ in type = types.bool; default = false; description = lib.mdDoc '' - Wether to enable LDAPS protocol. + Whether to enable LDAPS protocol. This also adds two entries to the `/etc/hosts` file to point [](#opt-services.portunus.domain) to localhost, so that CLIs and programs can use ldaps protocol and verify the certificate without opening the firewall port for the protocol. diff --git a/third_party/nixpkgs/nixos/modules/services/misc/serviio.nix b/third_party/nixpkgs/nixos/modules/services/misc/serviio.nix index 57efebb2c0..18e64030d7 100644 --- a/third_party/nixpkgs/nixos/modules/services/misc/serviio.nix +++ b/third_party/nixpkgs/nixos/modules/services/misc/serviio.nix @@ -80,7 +80,7 @@ in { 23424 # mediabrowser ]; allowedUDPPorts = [ - 1900 # UPnP service discovey + 1900 # UPnP service discovery ]; }; }; diff --git a/third_party/nixpkgs/nixos/modules/services/misc/sourcehut/service.nix b/third_party/nixpkgs/nixos/modules/services/misc/sourcehut/service.nix index 37a439ee35..aae13e0cc2 100644 --- a/third_party/nixpkgs/nixos/modules/services/misc/sourcehut/service.nix +++ b/third_party/nixpkgs/nixos/modules/services/misc/sourcehut/service.nix @@ -71,7 +71,7 @@ let # Note that each systemd service gets its own ${runDir}/config.ini file. ExecStartPre = mkBefore [("+"+pkgs.writeShellScript "${serviceName}-credentials" '' set -x - # Replace values begining with a '<' by the content of the file whose name is after. + # Replace values beginning with a '<' by the content of the file whose name is after. gawk '{ if (match($0,/^([^=]+=)<(.+)/,m)) { getline f < m[2]; print m[1] f } else print $0 }' ${configIni} | ${optionalString (!allowStripe) "gawk '!/^stripe-secret-key=/' |"} install -o ${srvCfg.user} -g root -m 400 /dev/stdin ${runDir}/config.ini diff --git a/third_party/nixpkgs/nixos/modules/services/misc/taskserver/default.nix b/third_party/nixpkgs/nixos/modules/services/misc/taskserver/default.nix index aeefd657f4..ee4bf42183 100644 --- a/third_party/nixpkgs/nixos/modules/services/misc/taskserver/default.nix +++ b/third_party/nixpkgs/nixos/modules/services/misc/taskserver/default.nix @@ -145,7 +145,7 @@ in { in lib.mdDoc '' Whether to enable the Taskwarrior server. - More instructions about NixOS in conjuction with Taskserver can be + More instructions about NixOS in conjunction with Taskserver can be found [in the NixOS manual](${url}). ''; }; @@ -251,7 +251,7 @@ in { client id (such as `task 2.3.0`). The values `all` or `none` have - special meaning. Overidden by any entry in the option + special meaning. Overridden by any entry in the option {option}`services.taskserver.disallowedClientIDs`. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/monitoring/grafana.nix b/third_party/nixpkgs/nixos/modules/services/monitoring/grafana.nix index 9b3068796d..9a9a0ab755 100644 --- a/third_party/nixpkgs/nixos/modules/services/monitoring/grafana.nix +++ b/third_party/nixpkgs/nixos/modules/services/monitoring/grafana.nix @@ -555,7 +555,7 @@ in { auto_assign_org_role = mkOption { description = lib.mdDoc "Default role new users will be auto assigned."; default = "Viewer"; - type = types.enum ["Viewer" "Editor"]; + type = types.enum ["Viewer" "Editor" "Admin"]; }; }; @@ -1291,7 +1291,10 @@ in { SystemCallArchitectures = "native"; # Upstream grafana is not setting SystemCallFilter for compatibility # reasons, see https://github.com/grafana/grafana/pull/40176 - SystemCallFilter = [ "@system-service" "~@privileged" ]; + SystemCallFilter = [ + "@system-service" + "~@privileged" + ] ++ lib.optional (cfg.settings.server.protocol == "socket") [ "@chown" ]; UMask = "0027"; }; preStart = '' diff --git a/third_party/nixpkgs/nixos/modules/services/monitoring/graphite.nix b/third_party/nixpkgs/nixos/modules/services/monitoring/graphite.nix index 8d92e60d3b..65c91b8f79 100644 --- a/third_party/nixpkgs/nixos/modules/services/monitoring/graphite.nix +++ b/third_party/nixpkgs/nixos/modules/services/monitoring/graphite.nix @@ -154,14 +154,14 @@ in { }; blacklist = mkOption { - description = lib.mdDoc "Any metrics received which match one of the experssions will be dropped."; + description = lib.mdDoc "Any metrics received which match one of the expressions will be dropped."; default = null; type = types.nullOr types.str; example = "^some\\.noisy\\.metric\\.prefix\\..*"; }; whitelist = mkOption { - description = lib.mdDoc "Only metrics received which match one of the experssions will be persisted."; + description = lib.mdDoc "Only metrics received which match one of the expressions will be persisted."; default = null; type = types.nullOr types.str; example = ".*"; diff --git a/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters.nix b/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters.nix index 2451f46ba7..f3fbfb149a 100644 --- a/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters.nix +++ b/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters.nix @@ -68,6 +68,7 @@ let "smartctl" "smokeping" "sql" + "statsd" "surfboard" "systemd" "tor" diff --git a/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters.xml b/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters.xml index 1df88bb61a..e922e1ace8 100644 --- a/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters.xml +++ b/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters.xml @@ -37,7 +37,7 @@ by default, via http under /metrics. In this example the firewall should just allow incoming connections to the exporter's port on the bridge interface br0 (this would - have to be configured seperately of course). For more information about + have to be configured separately of course). For more information about configuration see man configuration.nix or search through the available @@ -179,7 +179,7 @@ in # for the exporter's systemd service. One of # `serviceOpts.script` and `serviceOpts.serviceConfig.ExecStart` # has to be specified here. This will be merged with the default - # service confiuration. + # service configuration. # Note that by default 'DynamicUser' is 'true'. serviceOpts = { serviceConfig = { diff --git a/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters/nginxlog.nix b/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters/nginxlog.nix index 9e507423c7..674dc9dd41 100644 --- a/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters/nginxlog.nix +++ b/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters/nginxlog.nix @@ -17,7 +17,7 @@ in { settings that can all be used here: https://github.com/martin-helmich/prometheus-nginxlog-exporter The `listen` object is already generated by `port`, `listenAddress` and `metricsEndpoint` and - will be merged with the value of `settings` before writting it as JSON. + will be merged with the value of `settings` before writing it as JSON. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters/statsd.nix b/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters/statsd.nix new file mode 100644 index 0000000000..d9d732d8c1 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/services/monitoring/prometheus/exporters/statsd.nix @@ -0,0 +1,19 @@ +{ config, lib, pkgs, options }: + +with lib; + +let + cfg = config.services.prometheus.exporters.statsd; +in +{ + port = 9102; + serviceOpts = { + serviceConfig = { + ExecStart = '' + ${pkgs.prometheus-statsd-exporter}/bin/statsd_exporter \ + --web.listen-address ${cfg.listenAddress}:${toString cfg.port} \ + ${concatStringsSep " \\\n " cfg.extraFlags} + ''; + }; + }; +} diff --git a/third_party/nixpkgs/nixos/modules/services/monitoring/thanos.nix b/third_party/nixpkgs/nixos/modules/services/monitoring/thanos.nix index 41462da4ff..e6d8afc666 100644 --- a/third_party/nixpkgs/nixos/modules/services/monitoring/thanos.nix +++ b/third_party/nixpkgs/nixos/modules/services/monitoring/thanos.nix @@ -300,7 +300,7 @@ let max-time = mkParamDef types.str "9999-12-31T23:59:59Z" '' End of time range limit to serve. - Thanos Store serves only blocks, which happened eariler than this + Thanos Store serves only blocks, which happened earlier than this value. Option can be a constant time in RFC3339 format or time duration relative to current time, such as -1d or 2h45m. Valid duration units are ms, s, m, h, d, w, y. diff --git a/third_party/nixpkgs/nixos/modules/services/monitoring/ups.nix b/third_party/nixpkgs/nixos/modules/services/monitoring/ups.nix index c7abaeb297..bb11b6a1c1 100644 --- a/third_party/nixpkgs/nixos/modules/services/monitoring/ups.nix +++ b/third_party/nixpkgs/nixos/modules/services/monitoring/ups.nix @@ -12,7 +12,7 @@ let upsOptions = {name, config, ...}: { options = { - # This can be infered from the UPS model by looking at + # This can be inferred from the UPS model by looking at # /nix/store/nut/share/driver.list driver = mkOption { type = types.str; @@ -228,7 +228,7 @@ in "} ''; "nut/upssched.conf".source = cfg.schedulerRules; - # These file are containing private informations and thus should not + # These file are containing private information and thus should not # be stored inside the Nix store. /* "nut/upsd.conf".source = ""; diff --git a/third_party/nixpkgs/nixos/modules/services/network-filesystems/kubo.nix b/third_party/nixpkgs/nixos/modules/services/network-filesystems/kubo.nix index 2964ff6fb6..f323853893 100644 --- a/third_party/nixpkgs/nixos/modules/services/network-filesystems/kubo.nix +++ b/third_party/nixpkgs/nixos/modules/services/network-filesystems/kubo.nix @@ -59,7 +59,7 @@ in services.kubo = { - enable = mkEnableOption (lib.mdDoc "Interplanetary File System (WARNING: may cause severe network degredation)"); + enable = mkEnableOption (lib.mdDoc "Interplanetary File System (WARNING: may cause severe network degradation)"); package = mkOption { type = types.package; diff --git a/third_party/nixpkgs/nixos/modules/services/network-filesystems/moosefs.nix b/third_party/nixpkgs/nixos/modules/services/network-filesystems/moosefs.nix index c9a5a43ebc..ab82a2a07d 100644 --- a/third_party/nixpkgs/nixos/modules/services/network-filesystems/moosefs.nix +++ b/third_party/nixpkgs/nixos/modules/services/network-filesystems/moosefs.nix @@ -52,7 +52,7 @@ let chunkserverCfg = settingsFormat.generate "mfschunkserver.cfg" cfg.chunkserver.settings; - # generic template for all deamons + # generic template for all daemons systemdService = name: extraConfig: configFile: { wantedBy = [ "multi-user.target" ]; wants = [ "network-online.target" ]; @@ -94,7 +94,7 @@ in { Enable Moosefs master daemon. You need to run `mfsmaster-init` on a freshly installed master server to - initialize the `DATA_PATH` direcory. + initialize the `DATA_PATH` directory. ''; default = false; }; diff --git a/third_party/nixpkgs/nixos/modules/services/network-filesystems/orangefs/client.nix b/third_party/nixpkgs/nixos/modules/services/network-filesystems/orangefs/client.nix index 471e17970a..68f23f477a 100644 --- a/third_party/nixpkgs/nixos/modules/services/network-filesystems/orangefs/client.nix +++ b/third_party/nixpkgs/nixos/modules/services/network-filesystems/orangefs/client.nix @@ -21,7 +21,7 @@ in { fileSystems = mkOption { description = lib.mdDoc '' The orangefs file systems to be mounted. - This option is prefered over using {option}`fileSystems` directly since + This option is preferred over using {option}`fileSystems` directly since the pvfs client service needs to be running for it to be mounted. ''; diff --git a/third_party/nixpkgs/nixos/modules/services/network-filesystems/orangefs/server.nix b/third_party/nixpkgs/nixos/modules/services/network-filesystems/orangefs/server.nix index 8e6838c046..e20e7975eb 100644 --- a/third_party/nixpkgs/nixos/modules/services/network-filesystems/orangefs/server.nix +++ b/third_party/nixpkgs/nixos/modules/services/network-filesystems/orangefs/server.nix @@ -209,7 +209,7 @@ in { after = [ "network-online.target" ]; serviceConfig = { - # Run as "simple" in forground mode. + # Run as "simple" in foreground mode. # This is more reliable ExecStart = '' ${pkgs.orangefs}/bin/pvfs2-server -d \ diff --git a/third_party/nixpkgs/nixos/modules/services/networking/3proxy.nix b/third_party/nixpkgs/nixos/modules/services/networking/3proxy.nix index e643ed9413..ef695a7f49 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/3proxy.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/3proxy.nix @@ -158,7 +158,7 @@ in { description = lib.mdDoc '' List of target IP ranges, use empty list for any. May also contain host names instead of addresses. - It's possible to use wildmask in the begginning and in the the end of hostname, e.g. `*badsite.com` or `*badcontent*`. + It's possible to use wildmask in the beginning and in the the end of hostname, e.g. `*badsite.com` or `*badcontent*`. Hostname is only checked if hostname presents in request. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/biboumi.nix b/third_party/nixpkgs/nixos/modules/services/networking/biboumi.nix index 896a2350e3..1428856764 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/biboumi.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/biboumi.nix @@ -45,7 +45,7 @@ in default = "/etc/ssl/certs/ca-certificates.crt"; description = lib.mdDoc '' Specifies which file should be used as the list of trusted CA - when negociating a TLS session. + when negotiating a TLS session. ''; }; options.db_name = mkOption { @@ -111,7 +111,7 @@ in description = lib.mdDoc '' A directory that should contain the policy files, used to customize Botan’s behaviour - when negociating the TLS connections with the IRC servers. + when negotiating the TLS connections with the IRC servers. ''; }; options.port = mkOption { diff --git a/third_party/nixpkgs/nixos/modules/services/networking/bitcoind.nix b/third_party/nixpkgs/nixos/modules/services/networking/bitcoind.nix index 6df809a8b7..a86d52b720 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/bitcoind.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/bitcoind.nix @@ -95,7 +95,7 @@ let } ''; type = types.attrsOf (types.submodule rpcUserOpts); - description = lib.mdDoc "RPC user information for JSON-RPC connnections."; + description = lib.mdDoc "RPC user information for JSON-RPC connections."; }; }; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/bitlbee.nix b/third_party/nixpkgs/nixos/modules/services/networking/bitlbee.nix index 88c04597e2..146bffaa6e 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/bitlbee.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/bitlbee.nix @@ -60,7 +60,7 @@ in type = types.str; default = "127.0.0.1"; description = lib.mdDoc '' - The interface the BitlBee deamon will be listening to. If `127.0.0.1`, + The interface the BitlBee daemon will be listening to. If `127.0.0.1`, only clients on the local host can connect to it; if `0.0.0.0`, clients can access it from any network interface. ''; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/consul.nix b/third_party/nixpkgs/nixos/modules/services/networking/consul.nix index bee41dcf76..f1c36138be 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/consul.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/consul.nix @@ -142,7 +142,7 @@ in }; consulAddr = mkOption { - description = lib.mdDoc "Consul api listening adddress"; + description = lib.mdDoc "Consul api listening address"; default = "localhost:8500"; type = types.str; }; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/epmd.nix b/third_party/nixpkgs/nixos/modules/services/networking/epmd.nix index 534b809062..0bc8c71f4e 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/epmd.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/epmd.nix @@ -32,7 +32,7 @@ in default = "[::]:4369"; description = lib.mdDoc '' the listenStream used by the systemd socket. - see https://www.freedesktop.org/software/systemd/man/systemd.socket.html#ListenStream= for more informations. + see https://www.freedesktop.org/software/systemd/man/systemd.socket.html#ListenStream= for more information. use this to change the port epmd will run on. if not defined, epmd will use "[::]:4369" ''; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/firefox-syncserver.nix b/third_party/nixpkgs/nixos/modules/services/networking/firefox-syncserver.nix index c3d9f43f74..9733fb16d9 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/firefox-syncserver.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/firefox-syncserver.nix @@ -11,8 +11,10 @@ let format = pkgs.formats.toml {}; settings = { - database_url = dbURL; human_logs = true; + syncstorage = { + database_url = dbURL; + }; tokenserver = { node_type = "mysql"; database_url = dbURL; @@ -253,8 +255,7 @@ in serviceConfig = { User = defaultUser; Group = defaultUser; - ExecStart = "${cfg.package}/bin/syncstorage --config ${configFile}"; - Stderr = "journal"; + ExecStart = "${cfg.package}/bin/syncserver --config ${configFile}"; EnvironmentFile = lib.mkIf (cfg.secrets != null) "${cfg.secrets}"; # hardening diff --git a/third_party/nixpkgs/nixos/modules/services/networking/firewall-iptables.nix b/third_party/nixpkgs/nixos/modules/services/networking/firewall-iptables.nix new file mode 100644 index 0000000000..63e952194d --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/services/networking/firewall-iptables.nix @@ -0,0 +1,334 @@ +/* This module enables a simple firewall. + + The firewall can be customised in arbitrary ways by setting + ‘networking.firewall.extraCommands’. For modularity, the firewall + uses several chains: + + - ‘nixos-fw’ is the main chain for input packet processing. + + - ‘nixos-fw-accept’ is called for accepted packets. If you want + additional logging, or want to reject certain packets anyway, you + can insert rules at the start of this chain. + + - ‘nixos-fw-log-refuse’ and ‘nixos-fw-refuse’ are called for + refused packets. (The former jumps to the latter after logging + the packet.) If you want additional logging, or want to accept + certain packets anyway, you can insert rules at the start of + this chain. + + - ‘nixos-fw-rpfilter’ is used as the main chain in the mangle table, + called from the built-in ‘PREROUTING’ chain. If the kernel + supports it and `cfg.checkReversePath` is set this chain will + perform a reverse path filter test. + + - ‘nixos-drop’ is used while reloading the firewall in order to drop + all traffic. Since reloading isn't implemented in an atomic way + this'll prevent any traffic from leaking through while reloading + the firewall. However, if the reloading fails, the ‘firewall-stop’ + script will be called which in return will effectively disable the + complete firewall (in the default configuration). + +*/ + +{ config, lib, pkgs, ... }: + +with lib; + +let + + cfg = config.networking.firewall; + + inherit (config.boot.kernelPackages) kernel; + + kernelHasRPFilter = ((kernel.config.isEnabled or (x: false)) "IP_NF_MATCH_RPFILTER") || (kernel.features.netfilterRPFilter or false); + + helpers = import ./helpers.nix { inherit config lib; }; + + writeShScript = name: text: + let + dir = pkgs.writeScriptBin name '' + #! ${pkgs.runtimeShell} -e + ${text} + ''; + in + "${dir}/bin/${name}"; + + startScript = writeShScript "firewall-start" '' + ${helpers} + + # Flush the old firewall rules. !!! Ideally, updating the + # firewall would be atomic. Apparently that's possible + # with iptables-restore. + ip46tables -D INPUT -j nixos-fw 2> /dev/null || true + for chain in nixos-fw nixos-fw-accept nixos-fw-log-refuse nixos-fw-refuse; do + ip46tables -F "$chain" 2> /dev/null || true + ip46tables -X "$chain" 2> /dev/null || true + done + + + # The "nixos-fw-accept" chain just accepts packets. + ip46tables -N nixos-fw-accept + ip46tables -A nixos-fw-accept -j ACCEPT + + + # The "nixos-fw-refuse" chain rejects or drops packets. + ip46tables -N nixos-fw-refuse + + ${if cfg.rejectPackets then '' + # Send a reset for existing TCP connections that we've + # somehow forgotten about. Send ICMP "port unreachable" + # for everything else. + ip46tables -A nixos-fw-refuse -p tcp ! --syn -j REJECT --reject-with tcp-reset + ip46tables -A nixos-fw-refuse -j REJECT + '' else '' + ip46tables -A nixos-fw-refuse -j DROP + ''} + + + # The "nixos-fw-log-refuse" chain performs logging, then + # jumps to the "nixos-fw-refuse" chain. + ip46tables -N nixos-fw-log-refuse + + ${optionalString cfg.logRefusedConnections '' + ip46tables -A nixos-fw-log-refuse -p tcp --syn -j LOG --log-level info --log-prefix "refused connection: " + ''} + ${optionalString (cfg.logRefusedPackets && !cfg.logRefusedUnicastsOnly) '' + ip46tables -A nixos-fw-log-refuse -m pkttype --pkt-type broadcast \ + -j LOG --log-level info --log-prefix "refused broadcast: " + ip46tables -A nixos-fw-log-refuse -m pkttype --pkt-type multicast \ + -j LOG --log-level info --log-prefix "refused multicast: " + ''} + ip46tables -A nixos-fw-log-refuse -m pkttype ! --pkt-type unicast -j nixos-fw-refuse + ${optionalString cfg.logRefusedPackets '' + ip46tables -A nixos-fw-log-refuse \ + -j LOG --log-level info --log-prefix "refused packet: " + ''} + ip46tables -A nixos-fw-log-refuse -j nixos-fw-refuse + + + # The "nixos-fw" chain does the actual work. + ip46tables -N nixos-fw + + # Clean up rpfilter rules + ip46tables -t mangle -D PREROUTING -j nixos-fw-rpfilter 2> /dev/null || true + ip46tables -t mangle -F nixos-fw-rpfilter 2> /dev/null || true + ip46tables -t mangle -X nixos-fw-rpfilter 2> /dev/null || true + + ${optionalString (kernelHasRPFilter && (cfg.checkReversePath != false)) '' + # Perform a reverse-path test to refuse spoofers + # For now, we just drop, as the mangle table doesn't have a log-refuse yet + ip46tables -t mangle -N nixos-fw-rpfilter 2> /dev/null || true + ip46tables -t mangle -A nixos-fw-rpfilter -m rpfilter --validmark ${optionalString (cfg.checkReversePath == "loose") "--loose"} -j RETURN + + # Allows this host to act as a DHCP4 client without first having to use APIPA + iptables -t mangle -A nixos-fw-rpfilter -p udp --sport 67 --dport 68 -j RETURN + + # Allows this host to act as a DHCPv4 server + iptables -t mangle -A nixos-fw-rpfilter -s 0.0.0.0 -d 255.255.255.255 -p udp --sport 68 --dport 67 -j RETURN + + ${optionalString cfg.logReversePathDrops '' + ip46tables -t mangle -A nixos-fw-rpfilter -j LOG --log-level info --log-prefix "rpfilter drop: " + ''} + ip46tables -t mangle -A nixos-fw-rpfilter -j DROP + + ip46tables -t mangle -A PREROUTING -j nixos-fw-rpfilter + ''} + + # Accept all traffic on the trusted interfaces. + ${flip concatMapStrings cfg.trustedInterfaces (iface: '' + ip46tables -A nixos-fw -i ${iface} -j nixos-fw-accept + '')} + + # Accept packets from established or related connections. + ip46tables -A nixos-fw -m conntrack --ctstate ESTABLISHED,RELATED -j nixos-fw-accept + + # Accept connections to the allowed TCP ports. + ${concatStrings (mapAttrsToList (iface: cfg: + concatMapStrings (port: + '' + ip46tables -A nixos-fw -p tcp --dport ${toString port} -j nixos-fw-accept ${optionalString (iface != "default") "-i ${iface}"} + '' + ) cfg.allowedTCPPorts + ) cfg.allInterfaces)} + + # Accept connections to the allowed TCP port ranges. + ${concatStrings (mapAttrsToList (iface: cfg: + concatMapStrings (rangeAttr: + let range = toString rangeAttr.from + ":" + toString rangeAttr.to; in + '' + ip46tables -A nixos-fw -p tcp --dport ${range} -j nixos-fw-accept ${optionalString (iface != "default") "-i ${iface}"} + '' + ) cfg.allowedTCPPortRanges + ) cfg.allInterfaces)} + + # Accept packets on the allowed UDP ports. + ${concatStrings (mapAttrsToList (iface: cfg: + concatMapStrings (port: + '' + ip46tables -A nixos-fw -p udp --dport ${toString port} -j nixos-fw-accept ${optionalString (iface != "default") "-i ${iface}"} + '' + ) cfg.allowedUDPPorts + ) cfg.allInterfaces)} + + # Accept packets on the allowed UDP port ranges. + ${concatStrings (mapAttrsToList (iface: cfg: + concatMapStrings (rangeAttr: + let range = toString rangeAttr.from + ":" + toString rangeAttr.to; in + '' + ip46tables -A nixos-fw -p udp --dport ${range} -j nixos-fw-accept ${optionalString (iface != "default") "-i ${iface}"} + '' + ) cfg.allowedUDPPortRanges + ) cfg.allInterfaces)} + + # Optionally respond to ICMPv4 pings. + ${optionalString cfg.allowPing '' + iptables -w -A nixos-fw -p icmp --icmp-type echo-request ${optionalString (cfg.pingLimit != null) + "-m limit ${cfg.pingLimit} " + }-j nixos-fw-accept + ''} + + ${optionalString config.networking.enableIPv6 '' + # Accept all ICMPv6 messages except redirects and node + # information queries (type 139). See RFC 4890, section + # 4.4. + ip6tables -A nixos-fw -p icmpv6 --icmpv6-type redirect -j DROP + ip6tables -A nixos-fw -p icmpv6 --icmpv6-type 139 -j DROP + ip6tables -A nixos-fw -p icmpv6 -j nixos-fw-accept + + # Allow this host to act as a DHCPv6 client + ip6tables -A nixos-fw -d fe80::/64 -p udp --dport 546 -j nixos-fw-accept + ''} + + ${cfg.extraCommands} + + # Reject/drop everything else. + ip46tables -A nixos-fw -j nixos-fw-log-refuse + + + # Enable the firewall. + ip46tables -A INPUT -j nixos-fw + ''; + + stopScript = writeShScript "firewall-stop" '' + ${helpers} + + # Clean up in case reload fails + ip46tables -D INPUT -j nixos-drop 2>/dev/null || true + + # Clean up after added ruleset + ip46tables -D INPUT -j nixos-fw 2>/dev/null || true + + ${optionalString (kernelHasRPFilter && (cfg.checkReversePath != false)) '' + ip46tables -t mangle -D PREROUTING -j nixos-fw-rpfilter 2>/dev/null || true + ''} + + ${cfg.extraStopCommands} + ''; + + reloadScript = writeShScript "firewall-reload" '' + ${helpers} + + # Create a unique drop rule + ip46tables -D INPUT -j nixos-drop 2>/dev/null || true + ip46tables -F nixos-drop 2>/dev/null || true + ip46tables -X nixos-drop 2>/dev/null || true + ip46tables -N nixos-drop + ip46tables -A nixos-drop -j DROP + + # Don't allow traffic to leak out until the script has completed + ip46tables -A INPUT -j nixos-drop + + ${cfg.extraStopCommands} + + if ${startScript}; then + ip46tables -D INPUT -j nixos-drop 2>/dev/null || true + else + echo "Failed to reload firewall... Stopping" + ${stopScript} + exit 1 + fi + ''; + +in + +{ + + options = { + + networking.firewall = { + extraCommands = mkOption { + type = types.lines; + default = ""; + example = "iptables -A INPUT -p icmp -j ACCEPT"; + description = lib.mdDoc '' + Additional shell commands executed as part of the firewall + initialisation script. These are executed just before the + final "reject" firewall rule is added, so they can be used + to allow packets that would otherwise be refused. + + This option only works with the iptables based firewall. + ''; + }; + + extraStopCommands = mkOption { + type = types.lines; + default = ""; + example = "iptables -P INPUT ACCEPT"; + description = lib.mdDoc '' + Additional shell commands executed as part of the firewall + shutdown script. These are executed just after the removal + of the NixOS input rule, or if the service enters a failed + state. + + This option only works with the iptables based firewall. + ''; + }; + }; + + }; + + # FIXME: Maybe if `enable' is false, the firewall should still be + # built but not started by default? + config = mkIf (cfg.enable && config.networking.nftables.enable == false) { + + assertions = [ + # This is approximately "checkReversePath -> kernelHasRPFilter", + # but the checkReversePath option can include non-boolean + # values. + { + assertion = cfg.checkReversePath == false || kernelHasRPFilter; + message = "This kernel does not support rpfilter"; + } + ]; + + networking.firewall.checkReversePath = mkIf (!kernelHasRPFilter) (mkDefault false); + + systemd.services.firewall = { + description = "Firewall"; + wantedBy = [ "sysinit.target" ]; + wants = [ "network-pre.target" ]; + before = [ "network-pre.target" ]; + after = [ "systemd-modules-load.service" ]; + + path = [ cfg.package ] ++ cfg.extraPackages; + + # FIXME: this module may also try to load kernel modules, but + # containers don't have CAP_SYS_MODULE. So the host system had + # better have all necessary modules already loaded. + unitConfig.ConditionCapability = "CAP_NET_ADMIN"; + unitConfig.DefaultDependencies = false; + + reloadIfChanged = true; + + serviceConfig = { + Type = "oneshot"; + RemainAfterExit = true; + ExecStart = "@${startScript} firewall-start"; + ExecReload = "@${reloadScript} firewall-reload"; + ExecStop = "@${stopScript} firewall-stop"; + }; + }; + + }; + +} diff --git a/third_party/nixpkgs/nixos/modules/services/networking/firewall-nftables.nix b/third_party/nixpkgs/nixos/modules/services/networking/firewall-nftables.nix new file mode 100644 index 0000000000..0ed3c22807 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/services/networking/firewall-nftables.nix @@ -0,0 +1,167 @@ +{ config, lib, pkgs, ... }: + +with lib; + +let + + cfg = config.networking.firewall; + + ifaceSet = concatStringsSep ", " ( + map (x: ''"${x}"'') cfg.trustedInterfaces + ); + + portsToNftSet = ports: portRanges: concatStringsSep ", " ( + map (x: toString x) ports + ++ map (x: "${toString x.from}-${toString x.to}") portRanges + ); + +in + +{ + + options = { + + networking.firewall = { + extraInputRules = mkOption { + type = types.lines; + default = ""; + example = "ip6 saddr { fc00::/7, fe80::/10 } tcp dport 24800 accept"; + description = lib.mdDoc '' + Additional nftables rules to be appended to the input-allow + chain. + + This option only works with the nftables based firewall. + ''; + }; + + extraForwardRules = mkOption { + type = types.lines; + default = ""; + example = "iifname wg0 accept"; + description = lib.mdDoc '' + Additional nftables rules to be appended to the forward-allow + chain. + + This option only works with the nftables based firewall. + ''; + }; + }; + + }; + + config = mkIf (cfg.enable && config.networking.nftables.enable) { + + assertions = [ + { + assertion = cfg.extraCommands == ""; + message = "extraCommands is incompatible with the nftables based firewall: ${cfg.extraCommands}"; + } + { + assertion = cfg.extraStopCommands == ""; + message = "extraStopCommands is incompatible with the nftables based firewall: ${cfg.extraStopCommands}"; + } + { + assertion = cfg.pingLimit == null || !(hasPrefix "--" cfg.pingLimit); + message = "nftables syntax like \"2/second\" should be used in networking.firewall.pingLimit"; + } + { + assertion = config.networking.nftables.rulesetFile == null; + message = "networking.nftables.rulesetFile conflicts with the firewall"; + } + ]; + + networking.nftables.ruleset = '' + + table inet nixos-fw { + + ${optionalString (cfg.checkReversePath != false) '' + chain rpfilter { + type filter hook prerouting priority mangle + 10; policy drop; + + meta nfproto ipv4 udp sport . udp dport { 67 . 68, 68 . 67 } accept comment "DHCPv4 client/server" + fib saddr . mark ${optionalString (cfg.checkReversePath != "loose") ". iif"} oif exists accept + + ${optionalString cfg.logReversePathDrops '' + log level info prefix "rpfilter drop: " + ''} + + } + ''} + + chain input { + type filter hook input priority filter; policy drop; + + ${optionalString (ifaceSet != "") ''iifname { ${ifaceSet} } accept comment "trusted interfaces"''} + + # Some ICMPv6 types like NDP is untracked + ct state vmap { invalid : drop, established : accept, related : accept, * : jump input-allow } comment "*: new and untracked" + + ${optionalString cfg.logRefusedConnections '' + tcp flags syn / fin,syn,rst,ack log level info prefix "refused connection: " + ''} + ${optionalString (cfg.logRefusedPackets && !cfg.logRefusedUnicastsOnly) '' + pkttype broadcast log level info prefix "refused broadcast: " + pkttype multicast log level info prefix "refused multicast: " + ''} + ${optionalString cfg.logRefusedPackets '' + pkttype host log level info prefix "refused packet: " + ''} + + ${optionalString cfg.rejectPackets '' + meta l4proto tcp reject with tcp reset + reject + ''} + + } + + chain input-allow { + + ${concatStrings (mapAttrsToList (iface: cfg: + let + ifaceExpr = optionalString (iface != "default") "iifname ${iface}"; + tcpSet = portsToNftSet cfg.allowedTCPPorts cfg.allowedTCPPortRanges; + udpSet = portsToNftSet cfg.allowedUDPPorts cfg.allowedUDPPortRanges; + in + '' + ${optionalString (tcpSet != "") "${ifaceExpr} tcp dport { ${tcpSet} } accept"} + ${optionalString (udpSet != "") "${ifaceExpr} udp dport { ${udpSet} } accept"} + '' + ) cfg.allInterfaces)} + + ${optionalString cfg.allowPing '' + icmp type echo-request ${optionalString (cfg.pingLimit != null) "limit rate ${cfg.pingLimit}"} accept comment "allow ping" + ''} + + icmpv6 type != { nd-redirect, 139 } accept comment "Accept all ICMPv6 messages except redirects and node information queries (type 139). See RFC 4890, section 4.4." + ip6 daddr fe80::/64 udp dport 546 accept comment "DHCPv6 client" + + ${cfg.extraInputRules} + + } + + ${optionalString cfg.filterForward '' + chain forward { + type filter hook forward priority filter; policy drop; + + ct state vmap { invalid : drop, established : accept, related : accept, * : jump forward-allow } comment "*: new and untracked" + + } + + chain forward-allow { + + icmpv6 type != { router-renumbering, 139 } accept comment "Accept all ICMPv6 messages except renumbering and node information queries (type 139). See RFC 4890, section 4.3." + + ct status dnat accept comment "allow port forward" + + ${cfg.extraForwardRules} + + } + ''} + + } + + ''; + + }; + +} diff --git a/third_party/nixpkgs/nixos/modules/services/networking/firewall.nix b/third_party/nixpkgs/nixos/modules/services/networking/firewall.nix index 27119dcc57..4e332d489e 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/firewall.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/firewall.nix @@ -1,35 +1,3 @@ -/* This module enables a simple firewall. - - The firewall can be customised in arbitrary ways by setting - ‘networking.firewall.extraCommands’. For modularity, the firewall - uses several chains: - - - ‘nixos-fw’ is the main chain for input packet processing. - - - ‘nixos-fw-accept’ is called for accepted packets. If you want - additional logging, or want to reject certain packets anyway, you - can insert rules at the start of this chain. - - - ‘nixos-fw-log-refuse’ and ‘nixos-fw-refuse’ are called for - refused packets. (The former jumps to the latter after logging - the packet.) If you want additional logging, or want to accept - certain packets anyway, you can insert rules at the start of - this chain. - - - ‘nixos-fw-rpfilter’ is used as the main chain in the mangle table, - called from the built-in ‘PREROUTING’ chain. If the kernel - supports it and `cfg.checkReversePath` is set this chain will - perform a reverse path filter test. - - - ‘nixos-drop’ is used while reloading the firewall in order to drop - all traffic. Since reloading isn't implemented in an atomic way - this'll prevent any traffic from leaking through while reloading - the firewall. However, if the reloading fails, the ‘firewall-stop’ - script will be called which in return will effectively disable the - complete firewall (in the default configuration). - -*/ - { config, lib, pkgs, ... }: with lib; @@ -38,216 +6,6 @@ let cfg = config.networking.firewall; - inherit (config.boot.kernelPackages) kernel; - - kernelHasRPFilter = ((kernel.config.isEnabled or (x: false)) "IP_NF_MATCH_RPFILTER") || (kernel.features.netfilterRPFilter or false); - - helpers = import ./helpers.nix { inherit config lib; }; - - writeShScript = name: text: let dir = pkgs.writeScriptBin name '' - #! ${pkgs.runtimeShell} -e - ${text} - ''; in "${dir}/bin/${name}"; - - defaultInterface = { default = mapAttrs (name: value: cfg.${name}) commonOptions; }; - allInterfaces = defaultInterface // cfg.interfaces; - - startScript = writeShScript "firewall-start" '' - ${helpers} - - # Flush the old firewall rules. !!! Ideally, updating the - # firewall would be atomic. Apparently that's possible - # with iptables-restore. - ip46tables -D INPUT -j nixos-fw 2> /dev/null || true - for chain in nixos-fw nixos-fw-accept nixos-fw-log-refuse nixos-fw-refuse; do - ip46tables -F "$chain" 2> /dev/null || true - ip46tables -X "$chain" 2> /dev/null || true - done - - - # The "nixos-fw-accept" chain just accepts packets. - ip46tables -N nixos-fw-accept - ip46tables -A nixos-fw-accept -j ACCEPT - - - # The "nixos-fw-refuse" chain rejects or drops packets. - ip46tables -N nixos-fw-refuse - - ${if cfg.rejectPackets then '' - # Send a reset for existing TCP connections that we've - # somehow forgotten about. Send ICMP "port unreachable" - # for everything else. - ip46tables -A nixos-fw-refuse -p tcp ! --syn -j REJECT --reject-with tcp-reset - ip46tables -A nixos-fw-refuse -j REJECT - '' else '' - ip46tables -A nixos-fw-refuse -j DROP - ''} - - - # The "nixos-fw-log-refuse" chain performs logging, then - # jumps to the "nixos-fw-refuse" chain. - ip46tables -N nixos-fw-log-refuse - - ${optionalString cfg.logRefusedConnections '' - ip46tables -A nixos-fw-log-refuse -p tcp --syn -j LOG --log-level info --log-prefix "refused connection: " - ''} - ${optionalString (cfg.logRefusedPackets && !cfg.logRefusedUnicastsOnly) '' - ip46tables -A nixos-fw-log-refuse -m pkttype --pkt-type broadcast \ - -j LOG --log-level info --log-prefix "refused broadcast: " - ip46tables -A nixos-fw-log-refuse -m pkttype --pkt-type multicast \ - -j LOG --log-level info --log-prefix "refused multicast: " - ''} - ip46tables -A nixos-fw-log-refuse -m pkttype ! --pkt-type unicast -j nixos-fw-refuse - ${optionalString cfg.logRefusedPackets '' - ip46tables -A nixos-fw-log-refuse \ - -j LOG --log-level info --log-prefix "refused packet: " - ''} - ip46tables -A nixos-fw-log-refuse -j nixos-fw-refuse - - - # The "nixos-fw" chain does the actual work. - ip46tables -N nixos-fw - - # Clean up rpfilter rules - ip46tables -t mangle -D PREROUTING -j nixos-fw-rpfilter 2> /dev/null || true - ip46tables -t mangle -F nixos-fw-rpfilter 2> /dev/null || true - ip46tables -t mangle -X nixos-fw-rpfilter 2> /dev/null || true - - ${optionalString (kernelHasRPFilter && (cfg.checkReversePath != false)) '' - # Perform a reverse-path test to refuse spoofers - # For now, we just drop, as the mangle table doesn't have a log-refuse yet - ip46tables -t mangle -N nixos-fw-rpfilter 2> /dev/null || true - ip46tables -t mangle -A nixos-fw-rpfilter -m rpfilter --validmark ${optionalString (cfg.checkReversePath == "loose") "--loose"} -j RETURN - - # Allows this host to act as a DHCP4 client without first having to use APIPA - iptables -t mangle -A nixos-fw-rpfilter -p udp --sport 67 --dport 68 -j RETURN - - # Allows this host to act as a DHCPv4 server - iptables -t mangle -A nixos-fw-rpfilter -s 0.0.0.0 -d 255.255.255.255 -p udp --sport 68 --dport 67 -j RETURN - - ${optionalString cfg.logReversePathDrops '' - ip46tables -t mangle -A nixos-fw-rpfilter -j LOG --log-level info --log-prefix "rpfilter drop: " - ''} - ip46tables -t mangle -A nixos-fw-rpfilter -j DROP - - ip46tables -t mangle -A PREROUTING -j nixos-fw-rpfilter - ''} - - # Accept all traffic on the trusted interfaces. - ${flip concatMapStrings cfg.trustedInterfaces (iface: '' - ip46tables -A nixos-fw -i ${iface} -j nixos-fw-accept - '')} - - # Accept packets from established or related connections. - ip46tables -A nixos-fw -m conntrack --ctstate ESTABLISHED,RELATED -j nixos-fw-accept - - # Accept connections to the allowed TCP ports. - ${concatStrings (mapAttrsToList (iface: cfg: - concatMapStrings (port: - '' - ip46tables -A nixos-fw -p tcp --dport ${toString port} -j nixos-fw-accept ${optionalString (iface != "default") "-i ${iface}"} - '' - ) cfg.allowedTCPPorts - ) allInterfaces)} - - # Accept connections to the allowed TCP port ranges. - ${concatStrings (mapAttrsToList (iface: cfg: - concatMapStrings (rangeAttr: - let range = toString rangeAttr.from + ":" + toString rangeAttr.to; in - '' - ip46tables -A nixos-fw -p tcp --dport ${range} -j nixos-fw-accept ${optionalString (iface != "default") "-i ${iface}"} - '' - ) cfg.allowedTCPPortRanges - ) allInterfaces)} - - # Accept packets on the allowed UDP ports. - ${concatStrings (mapAttrsToList (iface: cfg: - concatMapStrings (port: - '' - ip46tables -A nixos-fw -p udp --dport ${toString port} -j nixos-fw-accept ${optionalString (iface != "default") "-i ${iface}"} - '' - ) cfg.allowedUDPPorts - ) allInterfaces)} - - # Accept packets on the allowed UDP port ranges. - ${concatStrings (mapAttrsToList (iface: cfg: - concatMapStrings (rangeAttr: - let range = toString rangeAttr.from + ":" + toString rangeAttr.to; in - '' - ip46tables -A nixos-fw -p udp --dport ${range} -j nixos-fw-accept ${optionalString (iface != "default") "-i ${iface}"} - '' - ) cfg.allowedUDPPortRanges - ) allInterfaces)} - - # Optionally respond to ICMPv4 pings. - ${optionalString cfg.allowPing '' - iptables -w -A nixos-fw -p icmp --icmp-type echo-request ${optionalString (cfg.pingLimit != null) - "-m limit ${cfg.pingLimit} " - }-j nixos-fw-accept - ''} - - ${optionalString config.networking.enableIPv6 '' - # Accept all ICMPv6 messages except redirects and node - # information queries (type 139). See RFC 4890, section - # 4.4. - ip6tables -A nixos-fw -p icmpv6 --icmpv6-type redirect -j DROP - ip6tables -A nixos-fw -p icmpv6 --icmpv6-type 139 -j DROP - ip6tables -A nixos-fw -p icmpv6 -j nixos-fw-accept - - # Allow this host to act as a DHCPv6 client - ip6tables -A nixos-fw -d fe80::/64 -p udp --dport 546 -j nixos-fw-accept - ''} - - ${cfg.extraCommands} - - # Reject/drop everything else. - ip46tables -A nixos-fw -j nixos-fw-log-refuse - - - # Enable the firewall. - ip46tables -A INPUT -j nixos-fw - ''; - - stopScript = writeShScript "firewall-stop" '' - ${helpers} - - # Clean up in case reload fails - ip46tables -D INPUT -j nixos-drop 2>/dev/null || true - - # Clean up after added ruleset - ip46tables -D INPUT -j nixos-fw 2>/dev/null || true - - ${optionalString (kernelHasRPFilter && (cfg.checkReversePath != false)) '' - ip46tables -t mangle -D PREROUTING -j nixos-fw-rpfilter 2>/dev/null || true - ''} - - ${cfg.extraStopCommands} - ''; - - reloadScript = writeShScript "firewall-reload" '' - ${helpers} - - # Create a unique drop rule - ip46tables -D INPUT -j nixos-drop 2>/dev/null || true - ip46tables -F nixos-drop 2>/dev/null || true - ip46tables -X nixos-drop 2>/dev/null || true - ip46tables -N nixos-drop - ip46tables -A nixos-drop -j DROP - - # Don't allow traffic to leak out until the script has completed - ip46tables -A INPUT -j nixos-drop - - ${cfg.extraStopCommands} - - if ${startScript}; then - ip46tables -D INPUT -j nixos-drop 2>/dev/null || true - else - echo "Failed to reload firewall... Stopping" - ${stopScript} - exit 1 - fi - ''; - canonicalizePortList = ports: lib.unique (builtins.sort builtins.lessThan ports); @@ -257,22 +15,20 @@ let default = [ ]; apply = canonicalizePortList; example = [ 22 80 ]; - description = - lib.mdDoc '' - List of TCP ports on which incoming connections are - accepted. - ''; + description = lib.mdDoc '' + List of TCP ports on which incoming connections are + accepted. + ''; }; allowedTCPPortRanges = mkOption { type = types.listOf (types.attrsOf types.port); default = [ ]; - example = [ { from = 8999; to = 9003; } ]; - description = - lib.mdDoc '' - A range of TCP ports on which incoming connections are - accepted. - ''; + example = [{ from = 8999; to = 9003; }]; + description = lib.mdDoc '' + A range of TCP ports on which incoming connections are + accepted. + ''; }; allowedUDPPorts = mkOption { @@ -280,20 +36,18 @@ let default = [ ]; apply = canonicalizePortList; example = [ 53 ]; - description = - lib.mdDoc '' - List of open UDP ports. - ''; + description = lib.mdDoc '' + List of open UDP ports. + ''; }; allowedUDPPortRanges = mkOption { type = types.listOf (types.attrsOf types.port); default = [ ]; - example = [ { from = 60000; to = 61000; } ]; - description = - lib.mdDoc '' - Range of open UDP ports. - ''; + example = [{ from = 60000; to = 61000; }]; + description = lib.mdDoc '' + Range of open UDP ports. + ''; }; }; @@ -301,240 +55,222 @@ in { - ###### interface - options = { networking.firewall = { enable = mkOption { type = types.bool; default = true; - description = - lib.mdDoc '' - Whether to enable the firewall. This is a simple stateful - firewall that blocks connection attempts to unauthorised TCP - or UDP ports on this machine. It does not affect packet - forwarding. - ''; + description = lib.mdDoc '' + Whether to enable the firewall. This is a simple stateful + firewall that blocks connection attempts to unauthorised TCP + or UDP ports on this machine. + ''; }; package = mkOption { type = types.package; - default = pkgs.iptables; - defaultText = literalExpression "pkgs.iptables"; + default = if config.networking.nftables.enable then pkgs.nftables else pkgs.iptables; + defaultText = literalExpression ''if config.networking.nftables.enable then "pkgs.nftables" else "pkgs.iptables"''; example = literalExpression "pkgs.iptables-legacy"; - description = - lib.mdDoc '' - The iptables package to use for running the firewall service. - ''; + description = lib.mdDoc '' + The package to use for running the firewall service. + ''; }; logRefusedConnections = mkOption { type = types.bool; default = true; - description = - lib.mdDoc '' - Whether to log rejected or dropped incoming connections. - Note: The logs are found in the kernel logs, i.e. dmesg - or journalctl -k. - ''; + description = lib.mdDoc '' + Whether to log rejected or dropped incoming connections. + Note: The logs are found in the kernel logs, i.e. dmesg + or journalctl -k. + ''; }; logRefusedPackets = mkOption { type = types.bool; default = false; - description = - lib.mdDoc '' - Whether to log all rejected or dropped incoming packets. - This tends to give a lot of log messages, so it's mostly - useful for debugging. - Note: The logs are found in the kernel logs, i.e. dmesg - or journalctl -k. - ''; + description = lib.mdDoc '' + Whether to log all rejected or dropped incoming packets. + This tends to give a lot of log messages, so it's mostly + useful for debugging. + Note: The logs are found in the kernel logs, i.e. dmesg + or journalctl -k. + ''; }; logRefusedUnicastsOnly = mkOption { type = types.bool; default = true; - description = - lib.mdDoc '' - If {option}`networking.firewall.logRefusedPackets` - and this option are enabled, then only log packets - specifically directed at this machine, i.e., not broadcasts - or multicasts. - ''; + description = lib.mdDoc '' + If {option}`networking.firewall.logRefusedPackets` + and this option are enabled, then only log packets + specifically directed at this machine, i.e., not broadcasts + or multicasts. + ''; }; rejectPackets = mkOption { type = types.bool; default = false; - description = - lib.mdDoc '' - If set, refused packets are rejected rather than dropped - (ignored). This means that an ICMP "port unreachable" error - message is sent back to the client (or a TCP RST packet in - case of an existing connection). Rejecting packets makes - port scanning somewhat easier. - ''; + description = lib.mdDoc '' + If set, refused packets are rejected rather than dropped + (ignored). This means that an ICMP "port unreachable" error + message is sent back to the client (or a TCP RST packet in + case of an existing connection). Rejecting packets makes + port scanning somewhat easier. + ''; }; trustedInterfaces = mkOption { type = types.listOf types.str; default = [ ]; example = [ "enp0s2" ]; - description = - lib.mdDoc '' - Traffic coming in from these interfaces will be accepted - unconditionally. Traffic from the loopback (lo) interface - will always be accepted. - ''; + description = lib.mdDoc '' + Traffic coming in from these interfaces will be accepted + unconditionally. Traffic from the loopback (lo) interface + will always be accepted. + ''; }; allowPing = mkOption { type = types.bool; default = true; - description = - lib.mdDoc '' - Whether to respond to incoming ICMPv4 echo requests - ("pings"). ICMPv6 pings are always allowed because the - larger address space of IPv6 makes network scanning much - less effective. - ''; + description = lib.mdDoc '' + Whether to respond to incoming ICMPv4 echo requests + ("pings"). ICMPv6 pings are always allowed because the + larger address space of IPv6 makes network scanning much + less effective. + ''; }; pingLimit = mkOption { type = types.nullOr (types.separatedString " "); default = null; example = "--limit 1/minute --limit-burst 5"; - description = - lib.mdDoc '' - If pings are allowed, this allows setting rate limits - on them. If non-null, this option should be in the form of - flags like "--limit 1/minute --limit-burst 5" - ''; + description = lib.mdDoc '' + If pings are allowed, this allows setting rate limits on them. + + For the iptables based firewall, it should be set like + "--limit 1/minute --limit-burst 5". + + For the nftables based firewall, it should be set like + "2/second" or "1/minute burst 5 packets". + ''; }; checkReversePath = mkOption { - type = types.either types.bool (types.enum ["strict" "loose"]); - default = kernelHasRPFilter; - defaultText = literalMD "`true` if supported by the chosen kernel"; + type = types.either types.bool (types.enum [ "strict" "loose" ]); + default = true; + defaultText = literalMD "`true` except if the iptables based firewall is in use and the kernel lacks rpfilter support"; example = "loose"; - description = - lib.mdDoc '' - Performs a reverse path filter test on a packet. If a reply - to the packet would not be sent via the same interface that - the packet arrived on, it is refused. + description = lib.mdDoc '' + Performs a reverse path filter test on a packet. If a reply + to the packet would not be sent via the same interface that + the packet arrived on, it is refused. - If using asymmetric routing or other complicated routing, set - this option to loose mode or disable it and setup your own - counter-measures. + If using asymmetric routing or other complicated routing, set + this option to loose mode or disable it and setup your own + counter-measures. - This option can be either true (or "strict"), "loose" (only - drop the packet if the source address is not reachable via any - interface) or false. Defaults to the value of - kernelHasRPFilter. - ''; + This option can be either true (or "strict"), "loose" (only + drop the packet if the source address is not reachable via any + interface) or false. + ''; }; logReversePathDrops = mkOption { type = types.bool; default = false; - description = - lib.mdDoc '' - Logs dropped packets failing the reverse path filter test if - the option networking.firewall.checkReversePath is enabled. - ''; + description = lib.mdDoc '' + Logs dropped packets failing the reverse path filter test if + the option networking.firewall.checkReversePath is enabled. + ''; + }; + + filterForward = mkOption { + type = types.bool; + default = false; + description = lib.mdDoc '' + Enable filtering in IP forwarding. + + This option only works with the nftables based firewall. + ''; }; connectionTrackingModules = mkOption { type = types.listOf types.str; default = [ ]; example = [ "ftp" "irc" "sane" "sip" "tftp" "amanda" "h323" "netbios_sn" "pptp" "snmp" ]; - description = - lib.mdDoc '' - List of connection-tracking helpers that are auto-loaded. - The complete list of possible values is given in the example. + description = lib.mdDoc '' + List of connection-tracking helpers that are auto-loaded. + The complete list of possible values is given in the example. - As helpers can pose as a security risk, it is advised to - set this to an empty list and disable the setting - networking.firewall.autoLoadConntrackHelpers unless you - know what you are doing. Connection tracking is disabled - by default. + As helpers can pose as a security risk, it is advised to + set this to an empty list and disable the setting + networking.firewall.autoLoadConntrackHelpers unless you + know what you are doing. Connection tracking is disabled + by default. - Loading of helpers is recommended to be done through the - CT target. More info: - https://home.regit.org/netfilter-en/secure-use-of-helpers/ - ''; + Loading of helpers is recommended to be done through the + CT target. More info: + https://home.regit.org/netfilter-en/secure-use-of-helpers/ + ''; }; autoLoadConntrackHelpers = mkOption { type = types.bool; default = false; - description = - lib.mdDoc '' - Whether to auto-load connection-tracking helpers. - See the description at networking.firewall.connectionTrackingModules + description = lib.mdDoc '' + Whether to auto-load connection-tracking helpers. + See the description at networking.firewall.connectionTrackingModules - (needs kernel 3.5+) - ''; - }; - - extraCommands = mkOption { - type = types.lines; - default = ""; - example = "iptables -A INPUT -p icmp -j ACCEPT"; - description = - lib.mdDoc '' - Additional shell commands executed as part of the firewall - initialisation script. These are executed just before the - final "reject" firewall rule is added, so they can be used - to allow packets that would otherwise be refused. - ''; + (needs kernel 3.5+) + ''; }; extraPackages = mkOption { type = types.listOf types.package; default = [ ]; example = literalExpression "[ pkgs.ipset ]"; - description = - lib.mdDoc '' - Additional packages to be included in the environment of the system - as well as the path of networking.firewall.extraCommands. - ''; - }; - - extraStopCommands = mkOption { - type = types.lines; - default = ""; - example = "iptables -P INPUT ACCEPT"; - description = - lib.mdDoc '' - Additional shell commands executed as part of the firewall - shutdown script. These are executed just after the removal - of the NixOS input rule, or if the service enters a failed - state. - ''; + description = lib.mdDoc '' + Additional packages to be included in the environment of the system + as well as the path of networking.firewall.extraCommands. + ''; }; interfaces = mkOption { default = { }; - type = with types; attrsOf (submodule [ { options = commonOptions; } ]); - description = - lib.mdDoc '' - Interface-specific open ports. - ''; + type = with types; attrsOf (submodule [{ options = commonOptions; }]); + description = lib.mdDoc '' + Interface-specific open ports. + ''; + }; + + allInterfaces = mkOption { + internal = true; + visible = false; + default = { default = mapAttrs (name: value: cfg.${name}) commonOptions; } // cfg.interfaces; + type = with types; attrsOf (submodule [{ options = commonOptions; }]); + description = lib.mdDoc '' + All open ports. + ''; }; } // commonOptions; }; - ###### implementation - - # FIXME: Maybe if `enable' is false, the firewall should still be - # built but not started by default? config = mkIf cfg.enable { + assertions = [ + { + assertion = cfg.filterForward -> config.networking.nftables.enable; + message = "filterForward only works with the nftables based firewall"; + } + ]; + networking.firewall.trustedInterfaces = [ "lo" ]; environment.systemPackages = [ cfg.package ] ++ cfg.extraPackages; @@ -545,40 +281,6 @@ in options nf_conntrack nf_conntrack_helper=1 ''; - assertions = [ - # This is approximately "checkReversePath -> kernelHasRPFilter", - # but the checkReversePath option can include non-boolean - # values. - { assertion = cfg.checkReversePath == false || kernelHasRPFilter; - message = "This kernel does not support rpfilter"; } - ]; - - systemd.services.firewall = { - description = "Firewall"; - wantedBy = [ "sysinit.target" ]; - wants = [ "network-pre.target" ]; - before = [ "network-pre.target" ]; - after = [ "systemd-modules-load.service" ]; - - path = [ cfg.package ] ++ cfg.extraPackages; - - # FIXME: this module may also try to load kernel modules, but - # containers don't have CAP_SYS_MODULE. So the host system had - # better have all necessary modules already loaded. - unitConfig.ConditionCapability = "CAP_NET_ADMIN"; - unitConfig.DefaultDependencies = false; - - reloadIfChanged = true; - - serviceConfig = { - Type = "oneshot"; - RemainAfterExit = true; - ExecStart = "@${startScript} firewall-start"; - ExecReload = "@${reloadScript} firewall-reload"; - ExecStop = "@${stopScript} firewall-stop"; - }; - }; - }; } diff --git a/third_party/nixpkgs/nixos/modules/services/networking/hans.nix b/third_party/nixpkgs/nixos/modules/services/networking/hans.nix index ffb2ee841c..3ea95b3bda 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/hans.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/hans.nix @@ -55,7 +55,7 @@ in passwordFile = mkOption { type = types.str; default = ""; - description = lib.mdDoc "File that containts password"; + description = lib.mdDoc "File that contains password"; }; }; @@ -92,7 +92,7 @@ in passwordFile = mkOption { type = types.str; default = ""; - description = lib.mdDoc "File that containts password"; + description = lib.mdDoc "File that contains password"; }; }; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/headscale.nix b/third_party/nixpkgs/nixos/modules/services/networking/headscale.nix index 0334c5a00b..cc46819eed 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/headscale.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/headscale.nix @@ -1,15 +1,18 @@ -{ config, lib, pkgs, ... }: -with lib; -let +{ + config, + lib, + pkgs, + ... +}: +with lib; let cfg = config.services.headscale; dataDir = "/var/lib/headscale"; runDir = "/run/headscale"; - settingsFormat = pkgs.formats.yaml { }; + settingsFormat = pkgs.formats.yaml {}; configFile = settingsFormat.generate "headscale.yaml" cfg.settings; -in -{ +in { options = { services.headscale = { enable = mkEnableOption (lib.mdDoc "headscale, Open Source coordination server for Tailscale"); @@ -51,15 +54,6 @@ in ''; }; - serverUrl = mkOption { - type = types.str; - default = "http://127.0.0.1:8080"; - description = lib.mdDoc '' - The url clients will connect to. - ''; - example = "https://myheadscale.example.com:443"; - }; - address = mkOption { type = types.str; default = "127.0.0.1"; @@ -78,337 +72,346 @@ in example = 443; }; - privateKeyFile = mkOption { - type = types.path; - default = "${dataDir}/private.key"; - description = lib.mdDoc '' - Path to private key file, generated automatically if it does not exist. - ''; - }; - - derp = { - urls = mkOption { - type = types.listOf types.str; - default = [ "https://controlplane.tailscale.com/derpmap/default" ]; - description = lib.mdDoc '' - List of urls containing DERP maps. - See [How Tailscale works](https://tailscale.com/blog/how-tailscale-works/) for more information on DERP maps. - ''; - }; - - paths = mkOption { - type = types.listOf types.path; - default = [ ]; - description = lib.mdDoc '' - List of file paths containing DERP maps. - See [How Tailscale works](https://tailscale.com/blog/how-tailscale-works/) for more information on DERP maps. - ''; - }; - - - autoUpdate = mkOption { - type = types.bool; - default = true; - description = lib.mdDoc '' - Whether to automatically update DERP maps on a set frequency. - ''; - example = false; - }; - - updateFrequency = mkOption { - type = types.str; - default = "24h"; - description = lib.mdDoc '' - Frequency to update DERP maps. - ''; - example = "5m"; - }; - - }; - - ephemeralNodeInactivityTimeout = mkOption { - type = types.str; - default = "30m"; - description = lib.mdDoc '' - Time before an inactive ephemeral node is deleted. - ''; - example = "5m"; - }; - - database = { - type = mkOption { - type = types.enum [ "sqlite3" "postgres" ]; - example = "postgres"; - default = "sqlite3"; - description = lib.mdDoc "Database engine to use."; - }; - - host = mkOption { - type = types.nullOr types.str; - default = null; - example = "127.0.0.1"; - description = lib.mdDoc "Database host address."; - }; - - port = mkOption { - type = types.nullOr types.port; - default = null; - example = 3306; - description = lib.mdDoc "Database host port."; - }; - - name = mkOption { - type = types.nullOr types.str; - default = null; - example = "headscale"; - description = lib.mdDoc "Database name."; - }; - - user = mkOption { - type = types.nullOr types.str; - default = null; - example = "headscale"; - description = lib.mdDoc "Database user."; - }; - - passwordFile = mkOption { - type = types.nullOr types.path; - default = null; - example = "/run/keys/headscale-dbpassword"; - description = lib.mdDoc '' - A file containing the password corresponding to - {option}`database.user`. - ''; - }; - - path = mkOption { - type = types.nullOr types.str; - default = "${dataDir}/db.sqlite"; - description = lib.mdDoc "Path to the sqlite3 database file."; - }; - }; - - logLevel = mkOption { - type = types.str; - default = "info"; - description = lib.mdDoc '' - headscale log level. - ''; - example = "debug"; - }; - - dns = { - nameservers = mkOption { - type = types.listOf types.str; - default = [ "1.1.1.1" ]; - description = lib.mdDoc '' - List of nameservers to pass to Tailscale clients. - ''; - }; - - domains = mkOption { - type = types.listOf types.str; - default = [ ]; - description = lib.mdDoc '' - Search domains to inject to Tailscale clients. - ''; - example = [ "mydomain.internal" ]; - }; - - magicDns = mkOption { - type = types.bool; - default = true; - description = lib.mdDoc '' - Whether to use [MagicDNS](https://tailscale.com/kb/1081/magicdns/). - Only works if there is at least a nameserver defined. - ''; - example = false; - }; - - baseDomain = mkOption { - type = types.str; - default = ""; - description = lib.mdDoc '' - Defines the base domain to create the hostnames for MagicDNS. - {option}`baseDomain` must be a FQDNs, without the trailing dot. - The FQDN of the hosts will be - `hostname.namespace.base_domain` (e.g. - `myhost.mynamespace.example.com`). - ''; - }; - }; - - openIdConnect = { - issuer = mkOption { - type = types.str; - default = ""; - description = lib.mdDoc '' - URL to OpenID issuer. - ''; - example = "https://openid.example.com"; - }; - - clientId = mkOption { - type = types.str; - default = ""; - description = lib.mdDoc '' - OpenID Connect client ID. - ''; - }; - - clientSecretFile = mkOption { - type = types.nullOr types.path; - default = null; - description = lib.mdDoc '' - Path to OpenID Connect client secret file. - ''; - }; - - domainMap = mkOption { - type = types.attrsOf types.str; - default = { }; - description = lib.mdDoc '' - Domain map is used to map incomming users (by their email) to - a namespace. The key can be a string, or regex. - ''; - example = { - ".*" = "default-namespace"; - }; - }; - - }; - - tls = { - letsencrypt = { - hostname = mkOption { - type = types.nullOr types.str; - default = ""; - description = lib.mdDoc '' - Domain name to request a TLS certificate for. - ''; - }; - challengeType = mkOption { - type = types.enum [ "TLS-ALPN-01" "HTTP-01" ]; - default = "HTTP-01"; - description = lib.mdDoc '' - Type of ACME challenge to use, currently supported types: - `HTTP-01` or `TLS-ALPN-01`. - ''; - }; - httpListen = mkOption { - type = types.nullOr types.str; - default = ":http"; - description = lib.mdDoc '' - When HTTP-01 challenge is chosen, letsencrypt must set up a - verification endpoint, and it will be listening on: - `:http = port 80`. - ''; - }; - }; - - certFile = mkOption { - type = types.nullOr types.path; - default = null; - description = lib.mdDoc '' - Path to already created certificate. - ''; - }; - keyFile = mkOption { - type = types.nullOr types.path; - default = null; - description = lib.mdDoc '' - Path to key for already created certificate. - ''; - }; - }; - - aclPolicyFile = mkOption { - type = types.nullOr types.path; - default = null; - description = lib.mdDoc '' - Path to a file containg ACL policies. - ''; - }; - settings = mkOption { - type = settingsFormat.type; - default = { }; description = lib.mdDoc '' Overrides to {file}`config.yaml` as a Nix attribute set. - This option is ideal for overriding settings not exposed as Nix options. Check the [example config](https://github.com/juanfont/headscale/blob/main/config-example.yaml) for possible options. ''; + type = types.submodule { + freeformType = settingsFormat.type; + + options = { + server_url = mkOption { + type = types.str; + default = "http://127.0.0.1:8080"; + description = lib.mdDoc '' + The url clients will connect to. + ''; + example = "https://myheadscale.example.com:443"; + }; + + private_key_path = mkOption { + type = types.path; + default = "${dataDir}/private.key"; + description = lib.mdDoc '' + Path to private key file, generated automatically if it does not exist. + ''; + }; + + noise.private_key_path = mkOption { + type = types.path; + default = "${dataDir}/noise_private.key"; + description = lib.mdDoc '' + Path to noise private key file, generated automatically if it does not exist. + ''; + }; + + derp = { + urls = mkOption { + type = types.listOf types.str; + default = ["https://controlplane.tailscale.com/derpmap/default"]; + description = lib.mdDoc '' + List of urls containing DERP maps. + See [How Tailscale works](https://tailscale.com/blog/how-tailscale-works/) for more information on DERP maps. + ''; + }; + + paths = mkOption { + type = types.listOf types.path; + default = []; + description = lib.mdDoc '' + List of file paths containing DERP maps. + See [How Tailscale works](https://tailscale.com/blog/how-tailscale-works/) for more information on DERP maps. + ''; + }; + + auto_update_enable = mkOption { + type = types.bool; + default = true; + description = lib.mdDoc '' + Whether to automatically update DERP maps on a set frequency. + ''; + example = false; + }; + + update_frequency = mkOption { + type = types.str; + default = "24h"; + description = lib.mdDoc '' + Frequency to update DERP maps. + ''; + example = "5m"; + }; + }; + + ephemeral_node_inactivity_timeout = mkOption { + type = types.str; + default = "30m"; + description = lib.mdDoc '' + Time before an inactive ephemeral node is deleted. + ''; + example = "5m"; + }; + + db_type = mkOption { + type = types.enum ["sqlite3" "postgres"]; + example = "postgres"; + default = "sqlite3"; + description = lib.mdDoc "Database engine to use."; + }; + + db_host = mkOption { + type = types.nullOr types.str; + default = null; + example = "127.0.0.1"; + description = lib.mdDoc "Database host address."; + }; + + db_port = mkOption { + type = types.nullOr types.port; + default = null; + example = 3306; + description = lib.mdDoc "Database host port."; + }; + + db_name = mkOption { + type = types.nullOr types.str; + default = null; + example = "headscale"; + description = lib.mdDoc "Database name."; + }; + + db_user = mkOption { + type = types.nullOr types.str; + default = null; + example = "headscale"; + description = lib.mdDoc "Database user."; + }; + + db_password_file = mkOption { + type = types.nullOr types.path; + default = null; + example = "/run/keys/headscale-dbpassword"; + description = lib.mdDoc '' + A file containing the password corresponding to + {option}`database.user`. + ''; + }; + + db_path = mkOption { + type = types.nullOr types.str; + default = "${dataDir}/db.sqlite"; + description = lib.mdDoc "Path to the sqlite3 database file."; + }; + + log.level = mkOption { + type = types.str; + default = "info"; + description = lib.mdDoc '' + headscale log level. + ''; + example = "debug"; + }; + + log.format = mkOption { + type = types.str; + default = "text"; + description = lib.mdDoc '' + headscale log format. + ''; + example = "json"; + }; + + dns_config = { + nameservers = mkOption { + type = types.listOf types.str; + default = ["1.1.1.1"]; + description = lib.mdDoc '' + List of nameservers to pass to Tailscale clients. + ''; + }; + + override_local_dns = mkOption { + type = types.bool; + default = false; + description = lib.mdDoc '' + Whether to use [Override local DNS](https://tailscale.com/kb/1054/dns/). + ''; + example = true; + }; + + domains = mkOption { + type = types.listOf types.str; + default = []; + description = lib.mdDoc '' + Search domains to inject to Tailscale clients. + ''; + example = ["mydomain.internal"]; + }; + + magic_dns = mkOption { + type = types.bool; + default = true; + description = lib.mdDoc '' + Whether to use [MagicDNS](https://tailscale.com/kb/1081/magicdns/). + Only works if there is at least a nameserver defined. + ''; + example = false; + }; + + base_domain = mkOption { + type = types.str; + default = ""; + description = lib.mdDoc '' + Defines the base domain to create the hostnames for MagicDNS. + {option}`baseDomain` must be a FQDNs, without the trailing dot. + The FQDN of the hosts will be + `hostname.namespace.base_domain` (e.g. + `myhost.mynamespace.example.com`). + ''; + }; + }; + + oidc = { + issuer = mkOption { + type = types.str; + default = ""; + description = lib.mdDoc '' + URL to OpenID issuer. + ''; + example = "https://openid.example.com"; + }; + + client_id = mkOption { + type = types.str; + default = ""; + description = lib.mdDoc '' + OpenID Connect client ID. + ''; + }; + + client_secret_file = mkOption { + type = types.nullOr types.path; + default = null; + description = lib.mdDoc '' + Path to OpenID Connect client secret file. + ''; + }; + + domain_map = mkOption { + type = types.attrsOf types.str; + default = {}; + description = lib.mdDoc '' + Domain map is used to map incomming users (by their email) to + a namespace. The key can be a string, or regex. + ''; + example = { + ".*" = "default-namespace"; + }; + }; + }; + + tls_letsencrypt_hostname = mkOption { + type = types.nullOr types.str; + default = ""; + description = lib.mdDoc '' + Domain name to request a TLS certificate for. + ''; + }; + + tls_letsencrypt_challenge_type = mkOption { + type = types.enum ["TLS-ALPN-01" "HTTP-01"]; + default = "HTTP-01"; + description = lib.mdDoc '' + Type of ACME challenge to use, currently supported types: + `HTTP-01` or `TLS-ALPN-01`. + ''; + }; + + tls_letsencrypt_listen = mkOption { + type = types.nullOr types.str; + default = ":http"; + description = lib.mdDoc '' + When HTTP-01 challenge is chosen, letsencrypt must set up a + verification endpoint, and it will be listening on: + `:http = port 80`. + ''; + }; + + tls_cert_path = mkOption { + type = types.nullOr types.path; + default = null; + description = lib.mdDoc '' + Path to already created certificate. + ''; + }; + + tls_key_path = mkOption { + type = types.nullOr types.path; + default = null; + description = lib.mdDoc '' + Path to key for already created certificate. + ''; + }; + + acl_policy_path = mkOption { + type = types.nullOr types.path; + default = null; + description = lib.mdDoc '' + Path to a file containg ACL policies. + ''; + }; + }; + }; }; - - }; - }; + + imports = [ + # TODO address + port = listen_addr + (mkRenamedOptionModule ["services" "headscale" "serverUrl"] ["services" "headscale" "settings" "server_url"]) + (mkRenamedOptionModule ["services" "headscale" "privateKeyFile"] ["services" "headscale" "settings" "private_key_path"]) + (mkRenamedOptionModule ["services" "headscale" "derp" "urls"] ["services" "headscale" "settings" "derp" "urls"]) + (mkRenamedOptionModule ["services" "headscale" "derp" "paths"] ["services" "headscale" "settings" "derp" "paths"]) + (mkRenamedOptionModule ["services" "headscale" "derp" "autoUpdate"] ["services" "headscale" "settings" "derp" "auto_update_enable"]) + (mkRenamedOptionModule ["services" "headscale" "derp" "updateFrequency"] ["services" "headscale" "settings" "derp" "update_frequency"]) + (mkRenamedOptionModule ["services" "headscale" "ephemeralNodeInactivityTimeout"] ["services" "headscale" "settings" "ephemeral_node_inactivity_timeout"]) + (mkRenamedOptionModule ["services" "headscale" "database" "type"] ["services" "headscale" "settings" "db_type"]) + (mkRenamedOptionModule ["services" "headscale" "database" "path"] ["services" "headscale" "settings" "db_path"]) + (mkRenamedOptionModule ["services" "headscale" "database" "host"] ["services" "headscale" "settings" "db_host"]) + (mkRenamedOptionModule ["services" "headscale" "database" "port"] ["services" "headscale" "settings" "db_port"]) + (mkRenamedOptionModule ["services" "headscale" "database" "name"] ["services" "headscale" "settings" "db_name"]) + (mkRenamedOptionModule ["services" "headscale" "database" "user"] ["services" "headscale" "settings" "db_user"]) + (mkRenamedOptionModule ["services" "headscale" "database" "passwordFile"] ["services" "headscale" "settings" "db_password_file"]) + (mkRenamedOptionModule ["services" "headscale" "logLevel"] ["services" "headscale" "settings" "log" "level"]) + (mkRenamedOptionModule ["services" "headscale" "dns" "nameservers"] ["services" "headscale" "settings" "dns_config" "nameservers"]) + (mkRenamedOptionModule ["services" "headscale" "dns" "domains"] ["services" "headscale" "settings" "dns_config" "domains"]) + (mkRenamedOptionModule ["services" "headscale" "dns" "magicDns"] ["services" "headscale" "settings" "dns_config" "magic_dns"]) + (mkRenamedOptionModule ["services" "headscale" "dns" "baseDomain"] ["services" "headscale" "settings" "dns_config" "base_domain"]) + (mkRenamedOptionModule ["services" "headscale" "openIdConnect" "issuer"] ["services" "headscale" "settings" "oidc" "issuer"]) + (mkRenamedOptionModule ["services" "headscale" "openIdConnect" "clientId"] ["services" "headscale" "settings" "oidc" "client_id"]) + (mkRenamedOptionModule ["services" "headscale" "openIdConnect" "clientSecretFile"] ["services" "headscale" "settings" "oidc" "client_secret_file"]) + (mkRenamedOptionModule ["services" "headscale" "openIdConnect" "domainMap"] ["services" "headscale" "settings" "oidc" "domain_map"]) + (mkRenamedOptionModule ["services" "headscale" "tls" "letsencrypt" "hostname"] ["services" "headscale" "settings" "tls_letsencrypt_hostname"]) + (mkRenamedOptionModule ["services" "headscale" "tls" "letsencrypt" "challengeType"] ["services" "headscale" "settings" "tls_letsencrypt_challenge_type"]) + (mkRenamedOptionModule ["services" "headscale" "tls" "letsencrypt" "httpListen"] ["services" "headscale" "settings" "tls_letsencrypt_listen"]) + (mkRenamedOptionModule ["services" "headscale" "tls" "certFile"] ["services" "headscale" "settings" "tls_cert_path"]) + (mkRenamedOptionModule ["services" "headscale" "tls" "keyFile"] ["services" "headscale" "settings" "tls_key_path"]) + (mkRenamedOptionModule ["services" "headscale" "aclPolicyFile"] ["services" "headscale" "settings" "acl_policy_path"]) + ]; + config = mkIf cfg.enable { - services.headscale.settings = { - server_url = mkDefault cfg.serverUrl; listen_addr = mkDefault "${cfg.address}:${toString cfg.port}"; - private_key_path = mkDefault cfg.privateKeyFile; - - derp = { - urls = mkDefault cfg.derp.urls; - paths = mkDefault cfg.derp.paths; - auto_update_enable = mkDefault cfg.derp.autoUpdate; - update_frequency = mkDefault cfg.derp.updateFrequency; - }; - # Turn off update checks since the origin of our package # is nixpkgs and not Github. disable_check_updates = true; - ephemeral_node_inactivity_timeout = mkDefault cfg.ephemeralNodeInactivityTimeout; - - db_type = mkDefault cfg.database.type; - db_path = mkDefault cfg.database.path; - - log_level = mkDefault cfg.logLevel; - - dns_config = { - nameservers = mkDefault cfg.dns.nameservers; - domains = mkDefault cfg.dns.domains; - magic_dns = mkDefault cfg.dns.magicDns; - base_domain = mkDefault cfg.dns.baseDomain; - }; - unix_socket = "${runDir}/headscale.sock"; - # OpenID Connect - oidc = { - issuer = mkDefault cfg.openIdConnect.issuer; - client_id = mkDefault cfg.openIdConnect.clientId; - domain_map = mkDefault cfg.openIdConnect.domainMap; - }; - tls_letsencrypt_cache_dir = "${dataDir}/.cache"; - - } // optionalAttrs (cfg.database.host != null) { - db_host = mkDefault cfg.database.host; - } // optionalAttrs (cfg.database.port != null) { - db_port = mkDefault cfg.database.port; - } // optionalAttrs (cfg.database.name != null) { - db_name = mkDefault cfg.database.name; - } // optionalAttrs (cfg.database.user != null) { - db_user = mkDefault cfg.database.user; - } // optionalAttrs (cfg.tls.letsencrypt.hostname != null) { - tls_letsencrypt_hostname = mkDefault cfg.tls.letsencrypt.hostname; - } // optionalAttrs (cfg.tls.letsencrypt.challengeType != null) { - tls_letsencrypt_challenge_type = mkDefault cfg.tls.letsencrypt.challengeType; - } // optionalAttrs (cfg.tls.letsencrypt.httpListen != null) { - tls_letsencrypt_listen = mkDefault cfg.tls.letsencrypt.httpListen; - } // optionalAttrs (cfg.tls.certFile != null) { - tls_cert_path = mkDefault cfg.tls.certFile; - } // optionalAttrs (cfg.tls.keyFile != null) { - tls_key_path = mkDefault cfg.tls.keyFile; - } // optionalAttrs (cfg.aclPolicyFile != null) { - acl_policy_path = mkDefault cfg.aclPolicyFile; }; # Setup the headscale configuration in a known path in /etc to @@ -416,7 +419,7 @@ in # for communication. environment.etc."headscale/config.yaml".source = configFile; - users.groups.headscale = mkIf (cfg.group == "headscale") { }; + users.groups.headscale = mkIf (cfg.group == "headscale") {}; users.users.headscale = mkIf (cfg.user == "headscale") { description = "headscale user"; @@ -427,70 +430,68 @@ in systemd.services.headscale = { description = "headscale coordination server for Tailscale"; - after = [ "network-online.target" ]; - wantedBy = [ "multi-user.target" ]; - restartTriggers = [ configFile ]; + after = ["network-online.target"]; + wantedBy = ["multi-user.target"]; + restartTriggers = [configFile]; environment.GIN_MODE = "release"; script = '' - ${optionalString (cfg.database.passwordFile != null) '' - export HEADSCALE_DB_PASS="$(head -n1 ${escapeShellArg cfg.database.passwordFile})" + ${optionalString (cfg.settings.db_password_file != null) '' + export HEADSCALE_DB_PASS="$(head -n1 ${escapeShellArg cfg.settings.db_password_file})" ''} - ${optionalString (cfg.openIdConnect.clientSecretFile != null) '' - export HEADSCALE_OIDC_CLIENT_SECRET="$(head -n1 ${escapeShellArg cfg.openIdConnect.clientSecretFile})" + ${optionalString (cfg.settings.oidc.client_secret_file != null) '' + export HEADSCALE_OIDC_CLIENT_SECRET="$(head -n1 ${escapeShellArg cfg.settings.oidc.client_secret_file})" ''} exec ${cfg.package}/bin/headscale serve ''; - serviceConfig = - let - capabilityBoundingSet = [ "CAP_CHOWN" ] ++ optional (cfg.port < 1024) "CAP_NET_BIND_SERVICE"; - in - { - Restart = "always"; - Type = "simple"; - User = cfg.user; - Group = cfg.group; + serviceConfig = let + capabilityBoundingSet = ["CAP_CHOWN"] ++ optional (cfg.port < 1024) "CAP_NET_BIND_SERVICE"; + in { + Restart = "always"; + Type = "simple"; + User = cfg.user; + Group = cfg.group; - # Hardening options - RuntimeDirectory = "headscale"; - # Allow headscale group access so users can be added and use the CLI. - RuntimeDirectoryMode = "0750"; + # Hardening options + RuntimeDirectory = "headscale"; + # Allow headscale group access so users can be added and use the CLI. + RuntimeDirectoryMode = "0750"; - StateDirectory = "headscale"; - StateDirectoryMode = "0750"; + StateDirectory = "headscale"; + StateDirectoryMode = "0750"; - ProtectSystem = "strict"; - ProtectHome = true; - PrivateTmp = true; - PrivateDevices = true; - ProtectKernelTunables = true; - ProtectControlGroups = true; - RestrictSUIDSGID = true; - PrivateMounts = true; - ProtectKernelModules = true; - ProtectKernelLogs = true; - ProtectHostname = true; - ProtectClock = true; - ProtectProc = "invisible"; - ProcSubset = "pid"; - RestrictNamespaces = true; - RemoveIPC = true; - UMask = "0077"; + ProtectSystem = "strict"; + ProtectHome = true; + PrivateTmp = true; + PrivateDevices = true; + ProtectKernelTunables = true; + ProtectControlGroups = true; + RestrictSUIDSGID = true; + PrivateMounts = true; + ProtectKernelModules = true; + ProtectKernelLogs = true; + ProtectHostname = true; + ProtectClock = true; + ProtectProc = "invisible"; + ProcSubset = "pid"; + RestrictNamespaces = true; + RemoveIPC = true; + UMask = "0077"; - CapabilityBoundingSet = capabilityBoundingSet; - AmbientCapabilities = capabilityBoundingSet; - NoNewPrivileges = true; - LockPersonality = true; - RestrictRealtime = true; - SystemCallFilter = [ "@system-service" "~@privileged" "@chown" ]; - SystemCallArchitectures = "native"; - RestrictAddressFamilies = "AF_INET AF_INET6 AF_UNIX"; - }; + CapabilityBoundingSet = capabilityBoundingSet; + AmbientCapabilities = capabilityBoundingSet; + NoNewPrivileges = true; + LockPersonality = true; + RestrictRealtime = true; + SystemCallFilter = ["@system-service" "~@privileged" "@chown"]; + SystemCallArchitectures = "native"; + RestrictAddressFamilies = "AF_INET AF_INET6 AF_UNIX"; + }; }; }; - meta.maintainers = with maintainers; [ kradalby ]; + meta.maintainers = with maintainers; [kradalby misterio77]; } diff --git a/third_party/nixpkgs/nixos/modules/services/networking/hylafax/systemd.nix b/third_party/nixpkgs/nixos/modules/services/networking/hylafax/systemd.nix index 4506bbbc5e..df6d0f49ee 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/hylafax/systemd.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/hylafax/systemd.nix @@ -96,7 +96,7 @@ let hardenService = # Add some common systemd service hardening settings, # but allow each service (here) to override - # settings by explicitely setting those to `null`. + # settings by explicitly setting those to `null`. # More hardening would be nice but makes # customizing hylafax setups very difficult. # If at all, it should only be added along diff --git a/third_party/nixpkgs/nixos/modules/services/networking/i2pd.nix b/third_party/nixpkgs/nixos/modules/services/networking/i2pd.nix index a02f8df111..3f6cb97296 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/i2pd.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/i2pd.nix @@ -473,7 +473,7 @@ in type = with types; nullOr str; default = null; description = lib.mdDoc '' - Router Familiy to trust for first hops. + Router Family to trust for first hops. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/iperf3.nix b/third_party/nixpkgs/nixos/modules/services/networking/iperf3.nix index a70085bb1f..0a204524e0 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/iperf3.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/iperf3.nix @@ -7,7 +7,7 @@ let port = mkOption { type = types.ints.u16; default = 5201; - description = lib.mdDoc "Server port to listen on for iperf3 client requsts."; + description = lib.mdDoc "Server port to listen on for iperf3 client requests."; }; affinity = mkOption { type = types.nullOr types.ints.unsigned; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/kea.nix b/third_party/nixpkgs/nixos/modules/services/networking/kea.nix index f39b149dd6..945f4113bd 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/kea.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/kea.nix @@ -47,7 +47,7 @@ in type = listOf str; default = []; description = lib.mdDoc '' - List of additonal arguments to pass to the daemon. + List of additional arguments to pass to the daemon. ''; }; @@ -86,7 +86,7 @@ in type = listOf str; default = []; description = lib.mdDoc '' - List of additonal arguments to pass to the daemon. + List of additional arguments to pass to the daemon. ''; }; @@ -146,7 +146,7 @@ in type = listOf str; default = []; description = lib.mdDoc '' - List of additonal arguments to pass to the daemon. + List of additional arguments to pass to the daemon. ''; }; @@ -207,7 +207,7 @@ in type = listOf str; default = []; description = lib.mdDoc '' - List of additonal arguments to pass to the daemon. + List of additional arguments to pass to the daemon. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/knot.nix b/third_party/nixpkgs/nixos/modules/services/networking/knot.nix index ee7ea83456..e97195d829 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/knot.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/knot.nix @@ -43,7 +43,7 @@ in { type = types.listOf types.str; default = []; description = lib.mdDoc '' - List of additional command line paramters for knotd + List of additional command line parameters for knotd ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/libreswan.nix b/third_party/nixpkgs/nixos/modules/services/networking/libreswan.nix index b5df31c28d..785729d8f7 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/libreswan.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/libreswan.nix @@ -106,7 +106,7 @@ in type = types.bool; default = true; description = lib.mdDoc '' - Whether to disable send and accept redirects for all nework interfaces. + Whether to disable send and accept redirects for all network interfaces. See the Libreswan [ FAQ](https://libreswan.org/wiki/FAQ#Why_is_it_recommended_to_disable_send_redirects_in_.2Fproc.2Fsys.2Fnet_.3F) page for why this is recommended. ''; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/lxd-image-server.nix b/third_party/nixpkgs/nixos/modules/services/networking/lxd-image-server.nix index 1099169440..d8e32eb997 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/lxd-image-server.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/lxd-image-server.nix @@ -87,7 +87,7 @@ in }; }; }) - # this is seperate so it can be enabled on mirrored hosts + # this is separate so it can be enabled on mirrored hosts (mkIf (cfg.nginx.enable) { # https://github.com/Avature/lxd-image-server/blob/master/resources/nginx/includes/lxd-image-server.pkg.conf services.nginx.virtualHosts = { diff --git a/third_party/nixpkgs/nixos/modules/services/networking/mmsd.nix b/third_party/nixpkgs/nixos/modules/services/networking/mmsd.nix new file mode 100644 index 0000000000..7e262a9326 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/services/networking/mmsd.nix @@ -0,0 +1,38 @@ +{ pkgs, lib, config, ... }: +with lib; +let + cfg = config.services.mmsd; + dbusServiceFile = pkgs.writeTextDir "share/dbus-1/services/org.ofono.mms.service" '' + [D-BUS Service] + Name=org.ofono.mms + SystemdService=dbus-org.ofono.mms.service + + # Exec= is still required despite SystemdService= being used: + # https://github.com/freedesktop/dbus/blob/ef55a3db0d8f17848f8a579092fb05900cc076f5/test/data/systemd-activation/com.example.SystemdActivatable1.service + Exec=${pkgs.coreutils}/bin/false mmsd + ''; +in +{ + options.services.mmsd = { + enable = mkEnableOption (mdDoc "Multimedia Messaging Service Daemon"); + extraArgs = mkOption { + type = with types; listOf str; + description = mdDoc "Extra arguments passed to `mmsd-tng`"; + default = []; + example = ["--debug"]; + }; + }; + config = mkIf cfg.enable { + services.dbus.packages = [ dbusServiceFile ]; + systemd.user.services.mmsd = { + after = [ "ModemManager.service" ]; + aliases = [ "dbus-org.ofono.mms.service" ]; + serviceConfig = { + Type = "dbus"; + ExecStart = "${pkgs.mmsd-tng}/bin/mmsdtng " + escapeShellArgs cfg.extraArgs; + BusName = "org.ofono.mms"; + Restart = "on-failure"; + }; + }; + }; +} diff --git a/third_party/nixpkgs/nixos/modules/services/networking/mosquitto.nix b/third_party/nixpkgs/nixos/modules/services/networking/mosquitto.nix index 6543eb34b4..270450cb0c 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/mosquitto.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/mosquitto.nix @@ -479,7 +479,7 @@ let Directories to be scanned for further config files to include. Directories will processed in the order given, `*.conf` files in the directory will be - read in case-sensistive alphabetical order. + read in case-sensitive alphabetical order. ''; default = []; }; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/nat-iptables.nix b/third_party/nixpkgs/nixos/modules/services/networking/nat-iptables.nix new file mode 100644 index 0000000000..d1bed401fe --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/services/networking/nat-iptables.nix @@ -0,0 +1,191 @@ +# This module enables Network Address Translation (NAT). +# XXX: todo: support multiple upstream links +# see http://yesican.chsoft.biz/lartc/MultihomedLinuxNetworking.html + +{ config, lib, pkgs, ... }: + +with lib; + +let + cfg = config.networking.nat; + + mkDest = externalIP: + if externalIP == null + then "-j MASQUERADE" + else "-j SNAT --to-source ${externalIP}"; + dest = mkDest cfg.externalIP; + destIPv6 = mkDest cfg.externalIPv6; + + # Whether given IP (plus optional port) is an IPv6. + isIPv6 = ip: builtins.length (lib.splitString ":" ip) > 2; + + helpers = import ./helpers.nix { inherit config lib; }; + + flushNat = '' + ${helpers} + ip46tables -w -t nat -D PREROUTING -j nixos-nat-pre 2>/dev/null|| true + ip46tables -w -t nat -F nixos-nat-pre 2>/dev/null || true + ip46tables -w -t nat -X nixos-nat-pre 2>/dev/null || true + ip46tables -w -t nat -D POSTROUTING -j nixos-nat-post 2>/dev/null || true + ip46tables -w -t nat -F nixos-nat-post 2>/dev/null || true + ip46tables -w -t nat -X nixos-nat-post 2>/dev/null || true + ip46tables -w -t nat -D OUTPUT -j nixos-nat-out 2>/dev/null || true + ip46tables -w -t nat -F nixos-nat-out 2>/dev/null || true + ip46tables -w -t nat -X nixos-nat-out 2>/dev/null || true + + ${cfg.extraStopCommands} + ''; + + mkSetupNat = { iptables, dest, internalIPs, forwardPorts }: '' + # We can't match on incoming interface in POSTROUTING, so + # mark packets coming from the internal interfaces. + ${concatMapStrings (iface: '' + ${iptables} -w -t nat -A nixos-nat-pre \ + -i '${iface}' -j MARK --set-mark 1 + '') cfg.internalInterfaces} + + # NAT the marked packets. + ${optionalString (cfg.internalInterfaces != []) '' + ${iptables} -w -t nat -A nixos-nat-post -m mark --mark 1 \ + ${optionalString (cfg.externalInterface != null) "-o ${cfg.externalInterface}"} ${dest} + ''} + + # NAT packets coming from the internal IPs. + ${concatMapStrings (range: '' + ${iptables} -w -t nat -A nixos-nat-post \ + -s '${range}' ${optionalString (cfg.externalInterface != null) "-o ${cfg.externalInterface}"} ${dest} + '') internalIPs} + + # NAT from external ports to internal ports. + ${concatMapStrings (fwd: '' + ${iptables} -w -t nat -A nixos-nat-pre \ + -i ${toString cfg.externalInterface} -p ${fwd.proto} \ + --dport ${builtins.toString fwd.sourcePort} \ + -j DNAT --to-destination ${fwd.destination} + + ${concatMapStrings (loopbackip: + let + matchIP = if isIPv6 fwd.destination then "[[]([0-9a-fA-F:]+)[]]" else "([0-9.]+)"; + m = builtins.match "${matchIP}:([0-9-]+)" fwd.destination; + destinationIP = if m == null then throw "bad ip:ports `${fwd.destination}'" else elemAt m 0; + destinationPorts = if m == null then throw "bad ip:ports `${fwd.destination}'" else builtins.replaceStrings ["-"] [":"] (elemAt m 1); + in '' + # Allow connections to ${loopbackip}:${toString fwd.sourcePort} from the host itself + ${iptables} -w -t nat -A nixos-nat-out \ + -d ${loopbackip} -p ${fwd.proto} \ + --dport ${builtins.toString fwd.sourcePort} \ + -j DNAT --to-destination ${fwd.destination} + + # Allow connections to ${loopbackip}:${toString fwd.sourcePort} from other hosts behind NAT + ${iptables} -w -t nat -A nixos-nat-pre \ + -d ${loopbackip} -p ${fwd.proto} \ + --dport ${builtins.toString fwd.sourcePort} \ + -j DNAT --to-destination ${fwd.destination} + + ${iptables} -w -t nat -A nixos-nat-post \ + -d ${destinationIP} -p ${fwd.proto} \ + --dport ${destinationPorts} \ + -j SNAT --to-source ${loopbackip} + '') fwd.loopbackIPs} + '') forwardPorts} + ''; + + setupNat = '' + ${helpers} + # Create subchains where we store rules + ip46tables -w -t nat -N nixos-nat-pre + ip46tables -w -t nat -N nixos-nat-post + ip46tables -w -t nat -N nixos-nat-out + + ${mkSetupNat { + iptables = "iptables"; + inherit dest; + inherit (cfg) internalIPs; + forwardPorts = filter (x: !(isIPv6 x.destination)) cfg.forwardPorts; + }} + + ${optionalString cfg.enableIPv6 (mkSetupNat { + iptables = "ip6tables"; + dest = destIPv6; + internalIPs = cfg.internalIPv6s; + forwardPorts = filter (x: isIPv6 x.destination) cfg.forwardPorts; + })} + + ${optionalString (cfg.dmzHost != null) '' + iptables -w -t nat -A nixos-nat-pre \ + -i ${toString cfg.externalInterface} -j DNAT \ + --to-destination ${cfg.dmzHost} + ''} + + ${cfg.extraCommands} + + # Append our chains to the nat tables + ip46tables -w -t nat -A PREROUTING -j nixos-nat-pre + ip46tables -w -t nat -A POSTROUTING -j nixos-nat-post + ip46tables -w -t nat -A OUTPUT -j nixos-nat-out + ''; + +in + +{ + + options = { + + networking.nat.extraCommands = mkOption { + type = types.lines; + default = ""; + example = "iptables -A INPUT -p icmp -j ACCEPT"; + description = lib.mdDoc '' + Additional shell commands executed as part of the nat + initialisation script. + + This option is incompatible with the nftables based nat module. + ''; + }; + + networking.nat.extraStopCommands = mkOption { + type = types.lines; + default = ""; + example = "iptables -D INPUT -p icmp -j ACCEPT || true"; + description = lib.mdDoc '' + Additional shell commands executed as part of the nat + teardown script. + + This option is incompatible with the nftables based nat module. + ''; + }; + + }; + + + config = mkIf (!config.networking.nftables.enable) + (mkMerge [ + ({ networking.firewall.extraCommands = mkBefore flushNat; }) + (mkIf config.networking.nat.enable { + + networking.firewall = mkIf config.networking.firewall.enable { + extraCommands = setupNat; + extraStopCommands = flushNat; + }; + + systemd.services = mkIf (!config.networking.firewall.enable) { + nat = { + description = "Network Address Translation"; + wantedBy = [ "network.target" ]; + after = [ "network-pre.target" "systemd-modules-load.service" ]; + path = [ config.networking.firewall.package ]; + unitConfig.ConditionCapability = "CAP_NET_ADMIN"; + + serviceConfig = { + Type = "oneshot"; + RemainAfterExit = true; + }; + + script = flushNat + setupNat; + + postStop = flushNat; + }; + }; + }) + ]); +} diff --git a/third_party/nixpkgs/nixos/modules/services/networking/nat-nftables.nix b/third_party/nixpkgs/nixos/modules/services/networking/nat-nftables.nix new file mode 100644 index 0000000000..483910a166 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/services/networking/nat-nftables.nix @@ -0,0 +1,184 @@ +{ config, lib, pkgs, ... }: + +with lib; + +let + cfg = config.networking.nat; + + mkDest = externalIP: + if externalIP == null + then "masquerade" + else "snat ${externalIP}"; + dest = mkDest cfg.externalIP; + destIPv6 = mkDest cfg.externalIPv6; + + toNftSet = list: concatStringsSep ", " list; + toNftRange = ports: replaceStrings [ ":" ] [ "-" ] (toString ports); + + ifaceSet = toNftSet (map (x: ''"${x}"'') cfg.internalInterfaces); + ipSet = toNftSet cfg.internalIPs; + ipv6Set = toNftSet cfg.internalIPv6s; + oifExpr = optionalString (cfg.externalInterface != null) ''oifname "${cfg.externalInterface}"''; + + # Whether given IP (plus optional port) is an IPv6. + isIPv6 = ip: length (lib.splitString ":" ip) > 2; + + splitIPPorts = IPPorts: + let + matchIP = if isIPv6 IPPorts then "[[]([0-9a-fA-F:]+)[]]" else "([0-9.]+)"; + m = builtins.match "${matchIP}:([0-9-]+)" IPPorts; + in + { + IP = if m == null then throw "bad ip:ports `${IPPorts}'" else elemAt m 0; + ports = if m == null then throw "bad ip:ports `${IPPorts}'" else elemAt m 1; + }; + + mkTable = { ipVer, dest, ipSet, forwardPorts, dmzHost }: + let + # nftables does not support both port and port range as values in a dnat map. + # e.g. "dnat th dport map { 80 : 10.0.0.1 . 80, 443 : 10.0.0.2 . 900-1000 }" + # So we split them. + fwdPorts = filter (x: length (splitString "-" x.destination) == 1) forwardPorts; + fwdPortsRange = filter (x: length (splitString "-" x.destination) > 1) forwardPorts; + + # nftables maps for port forward + # l4proto . dport : addr . port + toFwdMap = forwardPorts: toNftSet (map + (fwd: + with (splitIPPorts fwd.destination); + "${fwd.proto} . ${toNftRange fwd.sourcePort} : ${IP} . ${ports}" + ) + forwardPorts); + fwdMap = toFwdMap fwdPorts; + fwdRangeMap = toFwdMap fwdPortsRange; + + # nftables maps for port forward loopback dnat + # daddr . l4proto . dport : addr . port + toFwdLoopDnatMap = forwardPorts: toNftSet (concatMap + (fwd: map + (loopbackip: + with (splitIPPorts fwd.destination); + "${loopbackip} . ${fwd.proto} . ${toNftRange fwd.sourcePort} : ${IP} . ${ports}" + ) + fwd.loopbackIPs) + forwardPorts); + fwdLoopDnatMap = toFwdLoopDnatMap fwdPorts; + fwdLoopDnatRangeMap = toFwdLoopDnatMap fwdPortsRange; + + # nftables set for port forward loopback snat + # daddr . l4proto . dport + fwdLoopSnatSet = toNftSet (map + (fwd: + with (splitIPPorts fwd.destination); + "${IP} . ${fwd.proto} . ${ports}" + ) + forwardPorts); + in + '' + chain pre { + type nat hook prerouting priority dstnat; + + ${optionalString (fwdMap != "") '' + iifname "${cfg.externalInterface}" dnat meta l4proto . th dport map { ${fwdMap} } comment "port forward" + ''} + ${optionalString (fwdRangeMap != "") '' + iifname "${cfg.externalInterface}" dnat meta l4proto . th dport map { ${fwdRangeMap} } comment "port forward" + ''} + + ${optionalString (fwdLoopDnatMap != "") '' + dnat ${ipVer} daddr . meta l4proto . th dport map { ${fwdLoopDnatMap} } comment "port forward loopback from other hosts behind NAT" + ''} + ${optionalString (fwdLoopDnatRangeMap != "") '' + dnat ${ipVer} daddr . meta l4proto . th dport map { ${fwdLoopDnatRangeMap} } comment "port forward loopback from other hosts behind NAT" + ''} + + ${optionalString (dmzHost != null) '' + iifname "${cfg.externalInterface}" dnat ${dmzHost} comment "dmz" + ''} + } + + chain post { + type nat hook postrouting priority srcnat; + + ${optionalString (ifaceSet != "") '' + iifname { ${ifaceSet} } ${oifExpr} ${dest} comment "from internal interfaces" + ''} + ${optionalString (ipSet != "") '' + ${ipVer} saddr { ${ipSet} } ${oifExpr} ${dest} comment "from internal IPs" + ''} + + ${optionalString (fwdLoopSnatSet != "") '' + iifname != "${cfg.externalInterface}" ${ipVer} daddr . meta l4proto . th dport { ${fwdLoopSnatSet} } masquerade comment "port forward loopback snat" + ''} + } + + chain out { + type nat hook output priority mangle; + + ${optionalString (fwdLoopDnatMap != "") '' + dnat ${ipVer} daddr . meta l4proto . th dport map { ${fwdLoopDnatMap} } comment "port forward loopback from the host itself" + ''} + ${optionalString (fwdLoopDnatRangeMap != "") '' + dnat ${ipVer} daddr . meta l4proto . th dport map { ${fwdLoopDnatRangeMap} } comment "port forward loopback from the host itself" + ''} + } + ''; + +in + +{ + + config = mkIf (config.networking.nftables.enable && cfg.enable) { + + assertions = [ + { + assertion = cfg.extraCommands == ""; + message = "extraCommands is incompatible with the nftables based nat module: ${cfg.extraCommands}"; + } + { + assertion = cfg.extraStopCommands == ""; + message = "extraStopCommands is incompatible with the nftables based nat module: ${cfg.extraStopCommands}"; + } + { + assertion = config.networking.nftables.rulesetFile == null; + message = "networking.nftables.rulesetFile conflicts with the nat module"; + } + ]; + + networking.nftables.ruleset = '' + table ip nixos-nat { + ${mkTable { + ipVer = "ip"; + inherit dest ipSet; + forwardPorts = filter (x: !(isIPv6 x.destination)) cfg.forwardPorts; + inherit (cfg) dmzHost; + }} + } + + ${optionalString cfg.enableIPv6 '' + table ip6 nixos-nat { + ${mkTable { + ipVer = "ip6"; + dest = destIPv6; + ipSet = ipv6Set; + forwardPorts = filter (x: isIPv6 x.destination) cfg.forwardPorts; + dmzHost = null; + }} + } + ''} + ''; + + networking.firewall.extraForwardRules = optionalString config.networking.firewall.filterForward '' + ${optionalString (ifaceSet != "") '' + iifname { ${ifaceSet} } ${oifExpr} accept comment "from internal interfaces" + ''} + ${optionalString (ipSet != "") '' + ip saddr { ${ipSet} } ${oifExpr} accept comment "from internal IPs" + ''} + ${optionalString (ipv6Set != "") '' + ip6 saddr { ${ipv6Set} } ${oifExpr} accept comment "from internal IPv6s" + ''} + ''; + + }; +} diff --git a/third_party/nixpkgs/nixos/modules/services/networking/nat.nix b/third_party/nixpkgs/nixos/modules/services/networking/nat.nix index 0b70ae47cc..a6f403b46f 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/nat.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/nat.nix @@ -7,219 +7,95 @@ with lib; let + cfg = config.networking.nat; - mkDest = externalIP: if externalIP == null - then "-j MASQUERADE" - else "-j SNAT --to-source ${externalIP}"; - dest = mkDest cfg.externalIP; - destIPv6 = mkDest cfg.externalIPv6; - - # Whether given IP (plus optional port) is an IPv6. - isIPv6 = ip: builtins.length (lib.splitString ":" ip) > 2; - - helpers = import ./helpers.nix { inherit config lib; }; - - flushNat = '' - ${helpers} - ip46tables -w -t nat -D PREROUTING -j nixos-nat-pre 2>/dev/null|| true - ip46tables -w -t nat -F nixos-nat-pre 2>/dev/null || true - ip46tables -w -t nat -X nixos-nat-pre 2>/dev/null || true - ip46tables -w -t nat -D POSTROUTING -j nixos-nat-post 2>/dev/null || true - ip46tables -w -t nat -F nixos-nat-post 2>/dev/null || true - ip46tables -w -t nat -X nixos-nat-post 2>/dev/null || true - ip46tables -w -t nat -D OUTPUT -j nixos-nat-out 2>/dev/null || true - ip46tables -w -t nat -F nixos-nat-out 2>/dev/null || true - ip46tables -w -t nat -X nixos-nat-out 2>/dev/null || true - - ${cfg.extraStopCommands} - ''; - - mkSetupNat = { iptables, dest, internalIPs, forwardPorts }: '' - # We can't match on incoming interface in POSTROUTING, so - # mark packets coming from the internal interfaces. - ${concatMapStrings (iface: '' - ${iptables} -w -t nat -A nixos-nat-pre \ - -i '${iface}' -j MARK --set-mark 1 - '') cfg.internalInterfaces} - - # NAT the marked packets. - ${optionalString (cfg.internalInterfaces != []) '' - ${iptables} -w -t nat -A nixos-nat-post -m mark --mark 1 \ - ${optionalString (cfg.externalInterface != null) "-o ${cfg.externalInterface}"} ${dest} - ''} - - # NAT packets coming from the internal IPs. - ${concatMapStrings (range: '' - ${iptables} -w -t nat -A nixos-nat-post \ - -s '${range}' ${optionalString (cfg.externalInterface != null) "-o ${cfg.externalInterface}"} ${dest} - '') internalIPs} - - # NAT from external ports to internal ports. - ${concatMapStrings (fwd: '' - ${iptables} -w -t nat -A nixos-nat-pre \ - -i ${toString cfg.externalInterface} -p ${fwd.proto} \ - --dport ${builtins.toString fwd.sourcePort} \ - -j DNAT --to-destination ${fwd.destination} - - ${concatMapStrings (loopbackip: - let - matchIP = if isIPv6 fwd.destination then "[[]([0-9a-fA-F:]+)[]]" else "([0-9.]+)"; - m = builtins.match "${matchIP}:([0-9-]+)" fwd.destination; - destinationIP = if m == null then throw "bad ip:ports `${fwd.destination}'" else elemAt m 0; - destinationPorts = if m == null then throw "bad ip:ports `${fwd.destination}'" else builtins.replaceStrings ["-"] [":"] (elemAt m 1); - in '' - # Allow connections to ${loopbackip}:${toString fwd.sourcePort} from the host itself - ${iptables} -w -t nat -A nixos-nat-out \ - -d ${loopbackip} -p ${fwd.proto} \ - --dport ${builtins.toString fwd.sourcePort} \ - -j DNAT --to-destination ${fwd.destination} - - # Allow connections to ${loopbackip}:${toString fwd.sourcePort} from other hosts behind NAT - ${iptables} -w -t nat -A nixos-nat-pre \ - -d ${loopbackip} -p ${fwd.proto} \ - --dport ${builtins.toString fwd.sourcePort} \ - -j DNAT --to-destination ${fwd.destination} - - ${iptables} -w -t nat -A nixos-nat-post \ - -d ${destinationIP} -p ${fwd.proto} \ - --dport ${destinationPorts} \ - -j SNAT --to-source ${loopbackip} - '') fwd.loopbackIPs} - '') forwardPorts} - ''; - - setupNat = '' - ${helpers} - # Create subchains where we store rules - ip46tables -w -t nat -N nixos-nat-pre - ip46tables -w -t nat -N nixos-nat-post - ip46tables -w -t nat -N nixos-nat-out - - ${mkSetupNat { - iptables = "iptables"; - inherit dest; - inherit (cfg) internalIPs; - forwardPorts = filter (x: !(isIPv6 x.destination)) cfg.forwardPorts; - }} - - ${optionalString cfg.enableIPv6 (mkSetupNat { - iptables = "ip6tables"; - dest = destIPv6; - internalIPs = cfg.internalIPv6s; - forwardPorts = filter (x: isIPv6 x.destination) cfg.forwardPorts; - })} - - ${optionalString (cfg.dmzHost != null) '' - iptables -w -t nat -A nixos-nat-pre \ - -i ${toString cfg.externalInterface} -j DNAT \ - --to-destination ${cfg.dmzHost} - ''} - - ${cfg.extraCommands} - - # Append our chains to the nat tables - ip46tables -w -t nat -A PREROUTING -j nixos-nat-pre - ip46tables -w -t nat -A POSTROUTING -j nixos-nat-post - ip46tables -w -t nat -A OUTPUT -j nixos-nat-out - ''; - in { - ###### interface - options = { networking.nat.enable = mkOption { type = types.bool; default = false; - description = - lib.mdDoc '' - Whether to enable Network Address Translation (NAT). - ''; + description = lib.mdDoc '' + Whether to enable Network Address Translation (NAT). + ''; }; networking.nat.enableIPv6 = mkOption { type = types.bool; default = false; - description = - lib.mdDoc '' - Whether to enable IPv6 NAT. - ''; + description = lib.mdDoc '' + Whether to enable IPv6 NAT. + ''; }; networking.nat.internalInterfaces = mkOption { type = types.listOf types.str; - default = []; + default = [ ]; example = [ "eth0" ]; - description = - lib.mdDoc '' - The interfaces for which to perform NAT. Packets coming from - these interface and destined for the external interface will - be rewritten. - ''; + description = lib.mdDoc '' + The interfaces for which to perform NAT. Packets coming from + these interface and destined for the external interface will + be rewritten. + ''; }; networking.nat.internalIPs = mkOption { type = types.listOf types.str; - default = []; + default = [ ]; example = [ "192.168.1.0/24" ]; - description = - lib.mdDoc '' - The IP address ranges for which to perform NAT. Packets - coming from these addresses (on any interface) and destined - for the external interface will be rewritten. - ''; + description = lib.mdDoc '' + The IP address ranges for which to perform NAT. Packets + coming from these addresses (on any interface) and destined + for the external interface will be rewritten. + ''; }; networking.nat.internalIPv6s = mkOption { type = types.listOf types.str; - default = []; + default = [ ]; example = [ "fc00::/64" ]; - description = - lib.mdDoc '' - The IPv6 address ranges for which to perform NAT. Packets - coming from these addresses (on any interface) and destined - for the external interface will be rewritten. - ''; + description = lib.mdDoc '' + The IPv6 address ranges for which to perform NAT. Packets + coming from these addresses (on any interface) and destined + for the external interface will be rewritten. + ''; }; networking.nat.externalInterface = mkOption { type = types.nullOr types.str; default = null; example = "eth1"; - description = - lib.mdDoc '' - The name of the external network interface. - ''; + description = lib.mdDoc '' + The name of the external network interface. + ''; }; networking.nat.externalIP = mkOption { type = types.nullOr types.str; default = null; example = "203.0.113.123"; - description = - lib.mdDoc '' - The public IP address to which packets from the local - network are to be rewritten. If this is left empty, the - IP address associated with the external interface will be - used. - ''; + description = lib.mdDoc '' + The public IP address to which packets from the local + network are to be rewritten. If this is left empty, the + IP address associated with the external interface will be + used. + ''; }; networking.nat.externalIPv6 = mkOption { type = types.nullOr types.str; default = null; example = "2001:dc0:2001:11::175"; - description = - lib.mdDoc '' - The public IPv6 address to which packets from the local - network are to be rewritten. If this is left empty, the - IP address associated with the external interface will be - used. - ''; + description = lib.mdDoc '' + The public IPv6 address to which packets from the local + network are to be rewritten. If this is left empty, the + IP address associated with the external interface will be + used. + ''; }; networking.nat.forwardPorts = mkOption { @@ -246,122 +122,75 @@ in loopbackIPs = mkOption { type = types.listOf types.str; - default = []; + default = [ ]; example = literalExpression ''[ "55.1.2.3" ]''; description = lib.mdDoc "Public IPs for NAT reflection; for connections to `loopbackip:sourcePort' from the host itself and from other hosts behind NAT"; }; }; }); - default = []; + default = [ ]; example = [ { sourcePort = 8080; destination = "10.0.0.1:80"; proto = "tcp"; } { sourcePort = 8080; destination = "[fc00::2]:80"; proto = "tcp"; } ]; - description = - lib.mdDoc '' - List of forwarded ports from the external interface to - internal destinations by using DNAT. Destination can be - IPv6 if IPv6 NAT is enabled. - ''; + description = lib.mdDoc '' + List of forwarded ports from the external interface to + internal destinations by using DNAT. Destination can be + IPv6 if IPv6 NAT is enabled. + ''; }; networking.nat.dmzHost = mkOption { type = types.nullOr types.str; default = null; example = "10.0.0.1"; - description = - lib.mdDoc '' - The local IP address to which all traffic that does not match any - forwarding rule is forwarded. - ''; - }; - - networking.nat.extraCommands = mkOption { - type = types.lines; - default = ""; - example = "iptables -A INPUT -p icmp -j ACCEPT"; - description = - lib.mdDoc '' - Additional shell commands executed as part of the nat - initialisation script. - ''; - }; - - networking.nat.extraStopCommands = mkOption { - type = types.lines; - default = ""; - example = "iptables -D INPUT -p icmp -j ACCEPT || true"; - description = - lib.mdDoc '' - Additional shell commands executed as part of the nat - teardown script. - ''; + description = lib.mdDoc '' + The local IP address to which all traffic that does not match any + forwarding rule is forwarded. + ''; }; }; - ###### implementation + config = mkIf config.networking.nat.enable { - config = mkMerge [ - { networking.firewall.extraCommands = mkBefore flushNat; } - (mkIf config.networking.nat.enable { + assertions = [ + { + assertion = cfg.enableIPv6 -> config.networking.enableIPv6; + message = "networking.nat.enableIPv6 requires networking.enableIPv6"; + } + { + assertion = (cfg.dmzHost != null) -> (cfg.externalInterface != null); + message = "networking.nat.dmzHost requires networking.nat.externalInterface"; + } + { + assertion = (cfg.forwardPorts != [ ]) -> (cfg.externalInterface != null); + message = "networking.nat.forwardPorts requires networking.nat.externalInterface"; + } + ]; - assertions = [ - { assertion = cfg.enableIPv6 -> config.networking.enableIPv6; - message = "networking.nat.enableIPv6 requires networking.enableIPv6"; - } - { assertion = (cfg.dmzHost != null) -> (cfg.externalInterface != null); - message = "networking.nat.dmzHost requires networking.nat.externalInterface"; - } - { assertion = (cfg.forwardPorts != []) -> (cfg.externalInterface != null); - message = "networking.nat.forwardPorts requires networking.nat.externalInterface"; - } - ]; + # Use the same iptables package as in config.networking.firewall. + # When the firewall is enabled, this should be deduplicated without any + # error. + environment.systemPackages = [ config.networking.firewall.package ]; - # Use the same iptables package as in config.networking.firewall. - # When the firewall is enabled, this should be deduplicated without any - # error. - environment.systemPackages = [ config.networking.firewall.package ]; + boot = { + kernelModules = [ "nf_nat_ftp" ]; + kernel.sysctl = { + "net.ipv4.conf.all.forwarding" = mkOverride 99 true; + "net.ipv4.conf.default.forwarding" = mkOverride 99 true; + } // optionalAttrs cfg.enableIPv6 { + # Do not prevent IPv6 autoconfiguration. + # See . + "net.ipv6.conf.all.accept_ra" = mkOverride 99 2; + "net.ipv6.conf.default.accept_ra" = mkOverride 99 2; - boot = { - kernelModules = [ "nf_nat_ftp" ]; - kernel.sysctl = { - "net.ipv4.conf.all.forwarding" = mkOverride 99 true; - "net.ipv4.conf.default.forwarding" = mkOverride 99 true; - } // optionalAttrs cfg.enableIPv6 { - # Do not prevent IPv6 autoconfiguration. - # See . - "net.ipv6.conf.all.accept_ra" = mkOverride 99 2; - "net.ipv6.conf.default.accept_ra" = mkOverride 99 2; - - # Forward IPv6 packets. - "net.ipv6.conf.all.forwarding" = mkOverride 99 true; - "net.ipv6.conf.default.forwarding" = mkOverride 99 true; - }; + # Forward IPv6 packets. + "net.ipv6.conf.all.forwarding" = mkOverride 99 true; + "net.ipv6.conf.default.forwarding" = mkOverride 99 true; }; + }; - networking.firewall = mkIf config.networking.firewall.enable { - extraCommands = setupNat; - extraStopCommands = flushNat; - }; - - systemd.services = mkIf (!config.networking.firewall.enable) { nat = { - description = "Network Address Translation"; - wantedBy = [ "network.target" ]; - after = [ "network-pre.target" "systemd-modules-load.service" ]; - path = [ config.networking.firewall.package ]; - unitConfig.ConditionCapability = "CAP_NET_ADMIN"; - - serviceConfig = { - Type = "oneshot"; - RemainAfterExit = true; - }; - - script = flushNat + setupNat; - - postStop = flushNat; - }; }; - }) - ]; + }; } diff --git a/third_party/nixpkgs/nixos/modules/services/networking/ncdns.nix b/third_party/nixpkgs/nixos/modules/services/networking/ncdns.nix index 1d49433209..cc97beb14e 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/ncdns.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/ncdns.nix @@ -85,7 +85,7 @@ in ``` bit. IN NS ns1.example.com. ``` - If unset ncdns will generate an internal psuedo-hostname under the + If unset ncdns will generate an internal pseudo-hostname under the zone, which will resolve to the value of {option}`services.ncdns.identity.address`. If you are only using ncdns locally you can ignore this. diff --git a/third_party/nixpkgs/nixos/modules/services/networking/ndppd.nix b/third_party/nixpkgs/nixos/modules/services/networking/ndppd.nix index 6cbc9712be..98c58d2d5d 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/ndppd.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/ndppd.nix @@ -43,7 +43,7 @@ let timeout = mkOption { type = types.int; description = lib.mdDoc '' - Controls how long to wait for a Neighbor Advertisment Message before + Controls how long to wait for a Neighbor Advertisement Message before invalidating the entry, in milliseconds. ''; default = 500; @@ -74,7 +74,7 @@ let type = types.nullOr types.str; description = lib.mdDoc '' This is the target address is to match against. If no netmask - is provided, /128 is assumed. The addresses of serveral rules + is provided, /128 is assumed. The addresses of several rules may or may not overlap. Defaults to the name of the attrset. ''; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/nftables.nix b/third_party/nixpkgs/nixos/modules/services/networking/nftables.nix index d2d7543e8c..bd13e8c992 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/nftables.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/nftables.nix @@ -12,11 +12,9 @@ in default = false; description = lib.mdDoc '' - Whether to enable nftables. nftables is a Linux-based packet - filtering framework intended to replace frameworks like iptables. - - This conflicts with the standard networking firewall, so make sure to - disable it before using nftables. + Whether to enable nftables and use nftables based firewall if enabled. + nftables is a Linux-based packet filtering framework intended to + replace frameworks like iptables. Note that if you have Docker enabled you will not be able to use nftables without intervention. Docker uses iptables internally to @@ -37,7 +35,7 @@ in # Check out https://wiki.nftables.org/ for better documentation. # Table for both IPv4 and IPv6. table inet filter { - # Block all incomming connections traffic except SSH and "ping". + # Block all incoming connections traffic except SSH and "ping". chain input { type filter hook input priority 0; @@ -79,19 +77,17 @@ in lib.mdDoc '' The ruleset to be used with nftables. Should be in a format that can be loaded using "/bin/nft -f". The ruleset is updated atomically. + This option conflicts with rulesetFile. ''; }; networking.nftables.rulesetFile = mkOption { - type = types.path; - default = pkgs.writeTextFile { - name = "nftables-rules"; - text = cfg.ruleset; - }; - defaultText = literalMD ''a file with the contents of {option}`networking.nftables.ruleset`''; + type = types.nullOr types.path; + default = null; description = lib.mdDoc '' The ruleset file to be used with nftables. Should be in a format that can be loaded using "nft -f". The ruleset is updated atomically. + This option conflicts with ruleset and nftables based firewall. ''; }; }; @@ -99,10 +95,6 @@ in ###### implementation config = mkIf cfg.enable { - assertions = [{ - assertion = config.networking.firewall.enable == false; - message = "You can not use nftables and iptables at the same time. networking.firewall.enable must be set to false."; - }]; boot.blacklistedKernelModules = [ "ip_tables" ]; environment.systemPackages = [ pkgs.nftables ]; networking.networkmanager.firewallBackend = mkDefault "nftables"; @@ -116,7 +108,9 @@ in rulesScript = pkgs.writeScript "nftables-rules" '' #! ${pkgs.nftables}/bin/nft -f flush ruleset - include "${cfg.rulesetFile}" + ${if cfg.rulesetFile != null then '' + include "${cfg.rulesetFile}" + '' else cfg.ruleset} ''; in { Type = "oneshot"; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/nsd.nix b/third_party/nixpkgs/nixos/modules/services/networking/nsd.nix index 0ded926520..09f3bdc7ae 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/nsd.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/nsd.nix @@ -371,7 +371,7 @@ let default = null; example = "2000::1@1234"; description = lib.mdDoc '' - This address will be used for zone-transfere requests if configured + This address will be used for zone-transfer requests if configured as a secondary server or notifications in case of a primary server. Supply either a plain IPv4 or IPv6 address with an optional port number (ip@port). diff --git a/third_party/nixpkgs/nixos/modules/services/networking/ostinato.nix b/third_party/nixpkgs/nixos/modules/services/networking/ostinato.nix index 40c227ea0c..dc07313ea9 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/ostinato.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/ostinato.nix @@ -54,7 +54,7 @@ in default = "0.0.0.0"; description = lib.mdDoc '' By default, the Drone RPC server will listen on all interfaces and - local IPv4 adresses for incoming connections from clients. Specify + local IPv4 addresses for incoming connections from clients. Specify a single IPv4 or IPv6 address if you want to restrict that. To listen on any IPv6 address, use :: ''; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/pixiecore.nix b/third_party/nixpkgs/nixos/modules/services/networking/pixiecore.nix index ea4008d4d5..f410be4716 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/pixiecore.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/pixiecore.nix @@ -23,7 +23,7 @@ in mode = mkOption { description = lib.mdDoc "Which mode to use"; default = "boot"; - type = types.enum [ "api" "boot" ]; + type = types.enum [ "api" "boot" "quick" ]; }; debug = mkOption { @@ -38,6 +38,12 @@ in description = lib.mdDoc "Handle DHCP traffic without binding to the DHCP server port"; }; + quick = mkOption { + description = lib.mdDoc "Which quick option to use"; + default = "xyz"; + type = types.enum [ "arch" "centos" "coreos" "debian" "fedora" "ubuntu" "xyz" ]; + }; + kernel = mkOption { type = types.str or types.path; default = ""; @@ -117,6 +123,8 @@ in then [ "boot" cfg.kernel ] ++ optional (cfg.initrd != "") cfg.initrd ++ optionals (cfg.cmdLine != "") [ "--cmdline" cfg.cmdLine ] + else if cfg.mode == "quick" + then [ "quick" cfg.quick ] else [ "api" cfg.apiServer ]; in '' diff --git a/third_party/nixpkgs/nixos/modules/services/networking/pleroma.nix b/third_party/nixpkgs/nixos/modules/services/networking/pleroma.nix index dfd1ed4036..f317510258 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/pleroma.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/pleroma.nix @@ -52,7 +52,7 @@ in { the right place to store any secret Have a look to Pleroma section in the NixOS manual for more - informations. + information. ''; }; @@ -141,6 +141,8 @@ in { NoNewPrivileges = true; CapabilityBoundingSet = "~CAP_SYS_ADMIN"; }; + # disksup requires bash + path = [ pkgs.bash ]; }; }; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/prosody.nix b/third_party/nixpkgs/nixos/modules/services/networking/prosody.nix index 2d122bcf65..342638f93b 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/prosody.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/prosody.nix @@ -309,7 +309,7 @@ let type = types.int; default = 300; description = lib.mdDoc '' - Timout after which the room is destroyed or unlocked if not + Timeout after which the room is destroyed or unlocked if not configured, in seconds ''; }; @@ -489,7 +489,7 @@ in Setting this option to true will prevent you from building a NixOS configuration which won't comply with this standard. - You can explicitely decide to ignore this standard if you + You can explicitly decide to ignore this standard if you know what you are doing by setting this option to false. [1] https://xmpp.org/extensions/xep-0423.html @@ -649,7 +649,7 @@ in extraPluginPaths = mkOption { type = types.listOf types.path; default = []; - description = lib.mdDoc "Addtional path in which to look find plugins/modules"; + description = lib.mdDoc "Additional path in which to look find plugins/modules"; }; uploadHttp = mkOption { @@ -733,7 +733,7 @@ in Having a server not XEP-0423-compliant might make your XMPP experience terrible. See the NixOS manual for further - informations. + information. If you know what you're doing, you can disable this warning by setting config.services.prosody.xmppComplianceSuite to false. diff --git a/third_party/nixpkgs/nixos/modules/services/networking/radicale.nix b/third_party/nixpkgs/nixos/modules/services/networking/radicale.nix index a343dab7af..9ec507fe2a 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/radicale.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/radicale.nix @@ -77,7 +77,7 @@ in { . This option only works in conjunction with {option}`settings`. Setting this will also set {option}`settings.rights.type` and - {option}`settings.rights.file` to approriate values. + {option}`settings.rights.file` to appropriate values. ''; default = { }; example = literalExpression '' diff --git a/third_party/nixpkgs/nixos/modules/services/networking/rpcbind.nix b/third_party/nixpkgs/nixos/modules/services/networking/rpcbind.nix index aa04214deb..60e78dfec5 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/rpcbind.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/rpcbind.nix @@ -35,6 +35,16 @@ with lib; systemd.services.rpcbind = { wantedBy = [ "multi-user.target" ]; + # rpcbind performs a check for /var/run/rpcbind.lock at startup + # and will crash if /var/run isn't present. In the stock NixOS + # var.conf tmpfiles configuration file, /var/run is symlinked to + # /run, so rpcbind can enter a race condition in which /var/run + # isn't symlinked yet but tries to interact with the path, so + # controlling the order explicitly here ensures that rpcbind can + # start successfully. The `wants` instead of `requires` should + # avoid creating a strict/brittle dependency. + wants = [ "systemd-tmpfiles-setup.service" ]; + after = [ "systemd-tmpfiles-setup.service" ]; }; users.users.rpc = { diff --git a/third_party/nixpkgs/nixos/modules/services/networking/searx.nix b/third_party/nixpkgs/nixos/modules/services/networking/searx.nix index 214b6c6a78..6c57ddbde2 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/searx.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/searx.nix @@ -124,7 +124,7 @@ in description = lib.mdDoc '' Whether to run searx in uWSGI as a "vassal", instead of using its built-in HTTP server. This is the recommended mode for public or - large instances, but is unecessary for LAN or local-only use. + large instances, but is unnecessary for LAN or local-only use. ::: {.warning} The built-in HTTP server logs all queries by default. @@ -223,7 +223,7 @@ in module = "searx.webapp"; env = [ "SEARX_SETTINGS_PATH=${cfg.settingsFile}" - # searxng compatiblity https://github.com/searxng/searxng/issues/1519 + # searxng compatibility https://github.com/searxng/searxng/issues/1519 "SEARXNG_SETTINGS_PATH=${cfg.settingsFile}" ]; buffer-size = 32768; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/stunnel.nix b/third_party/nixpkgs/nixos/modules/services/networking/stunnel.nix index 3bd0367a0b..4f592fb312 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/stunnel.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/stunnel.nix @@ -78,7 +78,7 @@ in servers = mkOption { description = lib.mdDoc '' - Define the server configuations. + Define the server configurations. See "SERVICE-LEVEL OPTIONS" in {manpage}`stunnel(8)`. ''; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/tailscale.nix b/third_party/nixpkgs/nixos/modules/services/networking/tailscale.nix index 26997dd960..233bfdf9eb 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/tailscale.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/tailscale.nix @@ -4,10 +4,7 @@ with lib; let cfg = config.services.tailscale; - firewallOn = config.networking.firewall.enable; - rpfMode = config.networking.firewall.checkReversePath; isNetworkd = config.networking.useNetworkd; - rpfIsStrict = rpfMode == true || rpfMode == "strict"; in { meta.maintainers = with maintainers; [ danderson mbaillie twitchyliquid64 ]; @@ -38,14 +35,23 @@ in { defaultText = literalExpression "pkgs.tailscale"; description = lib.mdDoc "The package to use for tailscale"; }; + + useRoutingFeatures = mkOption { + type = types.enum [ "none" "client" "server" "both" ]; + default = "none"; + example = "server"; + description = lib.mdDoc '' + Enables settings required for Tailscale's routing features like subnet routers and exit nodes. + + To use these these features, you will still need to call `sudo tailscale up` with the relevant flags like `--advertise-exit-node` and `--exit-node`. + + When set to `client` or `both`, reverse path filtering will be set to loose instead of strict. + When set to `server` or `both`, IP forwarding will be enabled. + ''; + }; }; config = mkIf cfg.enable { - warnings = optional (firewallOn && rpfIsStrict) '' - Strict reverse path filtering breaks Tailscale exit node use and some subnet routing setups. Consider setting: - - networking.firewall.checkReversePath = "loose"; - ''; environment.systemPackages = [ cfg.package ]; # for the CLI systemd.packages = [ cfg.package ]; systemd.services.tailscaled = { @@ -75,6 +81,13 @@ in { stopIfChanged = false; }; + boot.kernel.sysctl = mkIf (cfg.useRoutingFeatures == "server" || cfg.useRoutingFeatures == "both") { + "net.ipv4.conf.all.forwarding" = mkDefault true; + "net.ipv6.conf.all.forwarding" = mkDefault true; + }; + + networking.firewall.checkReversePath = mkIf (cfg.useRoutingFeatures == "client" || cfg.useRoutingFeatures == "both") "loose"; + networking.dhcpcd.denyInterfaces = [ cfg.interfaceName ]; systemd.network.networks."50-tailscale" = mkIf isNetworkd { diff --git a/third_party/nixpkgs/nixos/modules/services/networking/tinc.nix b/third_party/nixpkgs/nixos/modules/services/networking/tinc.nix index 09b23a60a4..7db83e6a58 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/tinc.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/tinc.nix @@ -349,91 +349,94 @@ in ###### implementation - config = mkIf (cfg.networks != { }) { + config = mkIf (cfg.networks != { }) ( + let + etcConfig = foldr (a: b: a // b) { } + (flip mapAttrsToList cfg.networks (network: data: + flip mapAttrs' data.hosts (host: text: nameValuePair + ("tinc/${network}/hosts/${host}") + ({ mode = "0644"; user = "tinc.${network}"; inherit text; }) + ) // { + "tinc/${network}/tinc.conf" = { + mode = "0444"; + text = '' + ${toTincConf ({ Interface = "tinc.${network}"; } // data.settings)} + ${data.extraConfig} + ''; + }; + } + )); + in { + environment.etc = etcConfig; - environment.etc = foldr (a: b: a // b) { } - (flip mapAttrsToList cfg.networks (network: data: - flip mapAttrs' data.hosts (host: text: nameValuePair - ("tinc/${network}/hosts/${host}") - ({ mode = "0644"; user = "tinc.${network}"; inherit text; }) - ) // { - "tinc/${network}/tinc.conf" = { - mode = "0444"; - text = '' - ${toTincConf ({ Interface = "tinc.${network}"; } // data.settings)} - ${data.extraConfig} - ''; + systemd.services = flip mapAttrs' cfg.networks (network: data: nameValuePair + ("tinc.${network}") + (let version = getVersion data.package; in { + description = "Tinc Daemon - ${network}"; + wantedBy = [ "multi-user.target" ]; + path = [ data.package ]; + reloadTriggers = mkIf (versionAtLeast version "1.1pre") [ (builtins.toJSON etcConfig) ]; + restartTriggers = mkIf (versionOlder version "1.1pre") [ (builtins.toJSON etcConfig) ]; + serviceConfig = { + Type = "simple"; + Restart = "always"; + RestartSec = "3"; + ExecReload = mkIf (versionAtLeast version "1.1pre") "${data.package}/bin/tinc -n ${network} reload"; + ExecStart = "${data.package}/bin/tincd -D -U tinc.${network} -n ${network} ${optionalString (data.chroot) "-R"} --pidfile /run/tinc.${network}.pid -d ${toString data.debugLevel}"; }; - } - )); + preStart = '' + mkdir -p /etc/tinc/${network}/hosts + chown tinc.${network} /etc/tinc/${network}/hosts + mkdir -p /etc/tinc/${network}/invitations + chown tinc.${network} /etc/tinc/${network}/invitations - systemd.services = flip mapAttrs' cfg.networks (network: data: nameValuePair - ("tinc.${network}") - ({ - description = "Tinc Daemon - ${network}"; - wantedBy = [ "multi-user.target" ]; - path = [ data.package ]; - restartTriggers = [ config.environment.etc."tinc/${network}/tinc.conf".source ]; - serviceConfig = { - Type = "simple"; - Restart = "always"; - RestartSec = "3"; - ExecReload = mkIf (versionAtLeast (getVersion data.package) "1.1pre") "${data.package}/bin/tinc -n ${network} reload"; - ExecStart = "${data.package}/bin/tincd -D -U tinc.${network} -n ${network} ${optionalString (data.chroot) "-R"} --pidfile /run/tinc.${network}.pid -d ${toString data.debugLevel}"; + # Determine how we should generate our keys + if type tinc >/dev/null 2>&1; then + # Tinc 1.1+ uses the tinc helper application for key generation + ${if data.ed25519PrivateKeyFile != null then " # ed25519 Keyfile managed by nix" else '' + # Prefer ED25519 keys (only in 1.1+) + [ -f "/etc/tinc/${network}/ed25519_key.priv" ] || tinc -n ${network} generate-ed25519-keys + ''} + ${if data.rsaPrivateKeyFile != null then " # RSA Keyfile managed by nix" else '' + [ -f "/etc/tinc/${network}/rsa_key.priv" ] || tinc -n ${network} generate-rsa-keys 4096 + ''} + # In case there isn't anything to do + true + else + # Tinc 1.0 uses the tincd application + [ -f "/etc/tinc/${network}/rsa_key.priv" ] || tincd -n ${network} -K 4096 + fi + ''; + }) + ); + + environment.systemPackages = let + cli-wrappers = pkgs.stdenv.mkDerivation { + name = "tinc-cli-wrappers"; + nativeBuildInputs = [ pkgs.makeWrapper ]; + buildCommand = '' + mkdir -p $out/bin + ${concatStringsSep "\n" (mapAttrsToList (network: data: + optionalString (versionAtLeast data.package.version "1.1pre") '' + makeWrapper ${data.package}/bin/tinc "$out/bin/tinc.${network}" \ + --add-flags "--pidfile=/run/tinc.${network}.pid" \ + --add-flags "--config=/etc/tinc/${network}" + '') cfg.networks)} + ''; }; - preStart = '' - mkdir -p /etc/tinc/${network}/hosts - chown tinc.${network} /etc/tinc/${network}/hosts - mkdir -p /etc/tinc/${network}/invitations - chown tinc.${network} /etc/tinc/${network}/invitations + in [ cli-wrappers ]; - # Determine how we should generate our keys - if type tinc >/dev/null 2>&1; then - # Tinc 1.1+ uses the tinc helper application for key generation - ${if data.ed25519PrivateKeyFile != null then " # ed25519 Keyfile managed by nix" else '' - # Prefer ED25519 keys (only in 1.1+) - [ -f "/etc/tinc/${network}/ed25519_key.priv" ] || tinc -n ${network} generate-ed25519-keys - ''} - ${if data.rsaPrivateKeyFile != null then " # RSA Keyfile managed by nix" else '' - [ -f "/etc/tinc/${network}/rsa_key.priv" ] || tinc -n ${network} generate-rsa-keys 4096 - ''} - # In case there isn't anything to do - true - else - # Tinc 1.0 uses the tincd application - [ -f "/etc/tinc/${network}/rsa_key.priv" ] || tincd -n ${network} -K 4096 - fi - ''; - }) - ); - - environment.systemPackages = let - cli-wrappers = pkgs.stdenv.mkDerivation { - name = "tinc-cli-wrappers"; - nativeBuildInputs = [ pkgs.makeWrapper ]; - buildCommand = '' - mkdir -p $out/bin - ${concatStringsSep "\n" (mapAttrsToList (network: data: - optionalString (versionAtLeast data.package.version "1.1pre") '' - makeWrapper ${data.package}/bin/tinc "$out/bin/tinc.${network}" \ - --add-flags "--pidfile=/run/tinc.${network}.pid" \ - --add-flags "--config=/etc/tinc/${network}" - '') cfg.networks)} - ''; - }; - in [ cli-wrappers ]; - - users.users = flip mapAttrs' cfg.networks (network: _: - nameValuePair ("tinc.${network}") ({ - description = "Tinc daemon user for ${network}"; - isSystemUser = true; - group = "tinc.${network}"; - }) - ); - users.groups = flip mapAttrs' cfg.networks (network: _: - nameValuePair "tinc.${network}" {} - ); - }; + users.users = flip mapAttrs' cfg.networks (network: _: + nameValuePair ("tinc.${network}") ({ + description = "Tinc daemon user for ${network}"; + isSystemUser = true; + group = "tinc.${network}"; + }) + ); + users.groups = flip mapAttrs' cfg.networks (network: _: + nameValuePair "tinc.${network}" {} + ); + }); meta.maintainers = with maintainers; [ minijackson mic92 ]; } diff --git a/third_party/nixpkgs/nixos/modules/services/networking/tox-node.nix b/third_party/nixpkgs/nixos/modules/services/networking/tox-node.nix index fa5b241f91..884fd55dae 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/tox-node.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/tox-node.nix @@ -8,7 +8,7 @@ let homeDir = "/var/lib/tox-node"; configFile = let - src = "${pkg.src}/dpkg/config.yml"; + src = "${pkg.src}/tox_node/dpkg/config.yml"; confJSON = pkgs.writeText "config.json" ( builtins.toJSON { log-type = cfg.logType; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/unbound.nix b/third_party/nixpkgs/nixos/modules/services/networking/unbound.nix index fa24c70e63..c85dd03867 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/unbound.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/unbound.nix @@ -245,7 +245,7 @@ in { NotifyAccess = "main"; Type = "notify"; - # FIXME: Which of these do we actualy need, can we drop the chroot flag? + # FIXME: Which of these do we actually need, can we drop the chroot flag? AmbientCapabilities = [ "CAP_NET_BIND_SERVICE" "CAP_NET_RAW" diff --git a/third_party/nixpkgs/nixos/modules/services/networking/unifi.nix b/third_party/nixpkgs/nixos/modules/services/networking/unifi.nix index f04242d4ab..d220aa9fbb 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/unifi.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/unifi.nix @@ -76,7 +76,7 @@ in default = null; example = 4096; description = lib.mdDoc '' - Set the maximimum heap size for the JVM in MB. If this option isn't set, the + Set the maximum heap size for the JVM in MB. If this option isn't set, the JVM will decide this value at runtime. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/vsftpd.nix b/third_party/nixpkgs/nixos/modules/services/networking/vsftpd.nix index 5fee7b66a4..b1f0f74032 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/vsftpd.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/vsftpd.nix @@ -168,7 +168,7 @@ in The default is a file containing the users from {option}`userlist`. - If explicitely set to null userlist_file will not be set in vsftpd's config file. + If explicitly set to null userlist_file will not be set in vsftpd's config file. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/networking/wireguard.nix b/third_party/nixpkgs/nixos/modules/services/networking/wireguard.nix index 9c13f8b847..1d6556f626 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/wireguard.nix +++ b/third_party/nixpkgs/nixos/modules/services/networking/wireguard.nix @@ -303,7 +303,7 @@ let set -e # If the parent dir does not already exist, create it. - # Otherwise, does nothing, keeping existing permisions intact. + # Otherwise, does nothing, keeping existing permissions intact. mkdir -p --mode 0755 "${dirOf values.privateKeyFile}" if [ ! -f "${values.privateKeyFile}" ]; then diff --git a/third_party/nixpkgs/nixos/modules/services/networking/yggdrasil.xml b/third_party/nixpkgs/nixos/modules/services/networking/yggdrasil.xml index bc9da84fa4..a7b8c46952 100644 --- a/third_party/nixpkgs/nixos/modules/services/networking/yggdrasil.xml +++ b/third_party/nixpkgs/nixos/modules/services/networking/yggdrasil.xml @@ -30,7 +30,7 @@ An annotated example of a simple configuration: settings = { Peers = [ # Yggdrasil will automatically connect and "peer" with other nodes it - # discovers via link-local multicast annoucements. Unless this is the + # discovers via link-local multicast announcements. Unless this is the # case (it probably isn't) a node needs peers within the existing # network that it can tunnel to. "tcp://1.2.3.4:1024" @@ -78,7 +78,7 @@ in { }]; services.radvd = { - # Annouce the 300::/8 prefix to eth0. + # Announce the 300::/8 prefix to eth0. enable = true; config = '' interface eth0 diff --git a/third_party/nixpkgs/nixos/modules/services/printing/cups-pdf.nix b/third_party/nixpkgs/nixos/modules/services/printing/cups-pdf.nix new file mode 100644 index 0000000000..07f2436713 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/services/printing/cups-pdf.nix @@ -0,0 +1,185 @@ +{ config, lib, pkgs, ... }: + +let + + # cups calls its backends as user `lp` (which is good!), + # but cups-pdf wants to be called as `root`, so it can change ownership of files. + # We add a suid wrapper and a wrapper script to trick cups into calling the suid wrapper. + # Note that a symlink to the suid wrapper alone wouldn't suffice, cups would complain + # > File "/nix/store/xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx-cups-progs/lib/cups/backend/cups-pdf" has insecure permissions (0104554/uid=0/gid=20) + + # wrapper script that redirects calls to the suid wrapper + cups-pdf-wrapper = pkgs.writeTextFile { + name = "${pkgs.cups-pdf-to-pdf.name}-wrapper.sh"; + executable = true; + destination = "/lib/cups/backend/cups-pdf"; + checkPhase = '' + ${pkgs.stdenv.shellDryRun} "$target" + ${lib.getExe pkgs.shellcheck} "$target" + ''; + text = '' + #! ${pkgs.runtimeShell} + exec "${config.security.wrapperDir}/cups-pdf" "$@" + ''; + }; + + # wrapped cups-pdf package that uses the suid wrapper + cups-pdf-wrapped = pkgs.buildEnv { + name = "${pkgs.cups-pdf-to-pdf.name}-wrapped"; + # using the wrapper as first path ensures it is used + paths = [ cups-pdf-wrapper pkgs.cups-pdf-to-pdf ]; + ignoreCollisions = true; + }; + + instanceSettings = name: { + freeformType = with lib.types; nullOr (oneOf [ int str path package ]); + # override defaults: + # inject instance name into paths, + # also avoid conflicts between user names and special dirs + options.Out = lib.mkOption { + type = with lib.types; nullOr singleLineStr; + default = "/var/spool/cups-pdf-${name}/users/\${USER}"; + defaultText = "/var/spool/cups-pdf-{instance-name}/users/\${USER}"; + example = "\${HOME}/cups-pdf"; + description = lib.mdDoc '' + output directory; + `''${HOME}` will be expanded to the user's home directory, + `''${USER}` will be expanded to the user name. + ''; + }; + options.AnonDirName = lib.mkOption { + type = with lib.types; nullOr singleLineStr; + default = "/var/spool/cups-pdf-${name}/anonymous"; + defaultText = "/var/spool/cups-pdf-{instance-name}/anonymous"; + example = "/var/lib/cups-pdf"; + description = lib.mdDoc "path for anonymously created PDF files"; + }; + options.Spool = lib.mkOption { + type = with lib.types; nullOr singleLineStr; + default = "/var/spool/cups-pdf-${name}/spool"; + defaultText = "/var/spool/cups-pdf-{instance-name}/spool"; + example = "/var/lib/cups-pdf"; + description = lib.mdDoc "spool directory"; + }; + options.Anonuser = lib.mkOption { + type = lib.types.singleLineStr; + default = "root"; + description = lib.mdDoc '' + User for anonymous PDF creation. + An empty string disables this feature. + ''; + }; + options.GhostScript = lib.mkOption { + type = with lib.types; nullOr path; + default = lib.getExe pkgs.ghostscript; + defaultText = lib.literalExpression "lib.getExe pkgs.ghostscript"; + example = lib.literalExpression ''''${pkgs.ghostscript}/bin/ps2pdf''; + description = lib.mdDoc "location of GhostScript binary"; + }; + }; + + instanceConfig = { name, config, ... }: { + options = { + enable = (lib.mkEnableOption (lib.mdDoc "this cups-pdf instance")) // { default = true; }; + installPrinter = (lib.mkEnableOption (lib.mdDoc '' + a CUPS printer queue for this instance. + The queue will be named after the instance and will use the {file}`CUPS-PDF_opt.ppd` ppd file. + If this is disabled, you need to add the queue yourself to use the instance + '')) // { default = true; }; + confFileText = lib.mkOption { + type = lib.types.lines; + description = lib.mdDoc '' + This will contain the contents of {file}`cups-pdf.conf` for this instance, derived from {option}`settings`. + You can use this option to append text to the file. + ''; + }; + settings = lib.mkOption { + type = lib.types.submodule (instanceSettings name); + default = {}; + example = { + Out = "\${HOME}/cups-pdf"; + UserUMask = "0033"; + }; + description = lib.mdDoc '' + Settings for a cups-pdf instance, see the descriptions in the template config file in the cups-pdf package. + The key value pairs declared here will be translated into proper key value pairs for {file}`cups-pdf.conf`. + Setting a value to `null` disables the option and removes it from the file. + ''; + }; + }; + config.confFileText = lib.pipe config.settings [ + (lib.filterAttrs (key: value: value != null)) + (lib.mapAttrs (key: builtins.toString)) + (lib.mapAttrsToList (key: value: "${key} ${value}\n")) + lib.concatStrings + ]; + }; + + cupsPdfCfg = config.services.printing.cups-pdf; + + copyConfigFileCmds = lib.pipe cupsPdfCfg.instances [ + (lib.filterAttrs (name: lib.getAttr "enable")) + (lib.mapAttrs (name: lib.getAttr "confFileText")) + (lib.mapAttrs (name: pkgs.writeText "cups-pdf-${name}.conf")) + (lib.mapAttrsToList (name: confFile: "ln --symbolic --no-target-directory ${confFile} /var/lib/cups/cups-pdf-${name}.conf\n")) + lib.concatStrings + ]; + + printerSettings = lib.pipe cupsPdfCfg.instances [ + (lib.filterAttrs (name: lib.getAttr "enable")) + (lib.filterAttrs (name: lib.getAttr "installPrinter")) + (lib.mapAttrsToList (name: instance: (lib.mapAttrs (key: lib.mkDefault) { + inherit name; + model = "CUPS-PDF_opt.ppd"; + deviceUri = "cups-pdf:/${name}"; + description = "virtual printer for cups-pdf instance ${name}"; + location = instance.settings.Out; + }))) + ]; + +in + +{ + + options.services.printing.cups-pdf = { + enable = lib.mkEnableOption (lib.mdDoc '' + the cups-pdf virtual pdf printer backend. + By default, this will install a single printer `pdf`. + but this can be changed/extended with {option}`services.printing.cups-pdf.instances` + ''); + instances = lib.mkOption { + type = lib.types.attrsOf (lib.types.submodule instanceConfig); + default.pdf = {}; + example.pdf.settings = { + Out = "\${HOME}/cups-pdf"; + UserUMask = "0033"; + }; + description = lib.mdDoc '' + Permits to raise one or more cups-pdf instances. + Each instance is named by an attribute name, and the attribute's values control the instance' configuration. + ''; + }; + }; + + config = lib.mkIf cupsPdfCfg.enable { + services.printing.enable = true; + services.printing.drivers = [ cups-pdf-wrapped ]; + hardware.printers.ensurePrinters = printerSettings; + # the cups module will install the default config file, + # but we don't need it and it would confuse cups-pdf + systemd.services.cups.preStart = lib.mkAfter '' + rm -f /var/lib/cups/cups-pdf.conf + ${copyConfigFileCmds} + ''; + security.wrappers.cups-pdf = { + group = "lp"; + owner = "root"; + permissions = "+r,ug+x"; + setuid = true; + source = "${pkgs.cups-pdf-to-pdf}/lib/cups/backend/cups-pdf"; + }; + }; + + meta.maintainers = [ lib.maintainers.yarny ]; + +} diff --git a/third_party/nixpkgs/nixos/modules/services/printing/ipp-usb.nix b/third_party/nixpkgs/nixos/modules/services/printing/ipp-usb.nix index 0425eb9137..8ed2ff8268 100644 --- a/third_party/nixpkgs/nixos/modules/services/printing/ipp-usb.nix +++ b/third_party/nixpkgs/nixos/modules/services/printing/ipp-usb.nix @@ -7,7 +7,7 @@ config = lib.mkIf config.services.ipp-usb.enable { systemd.services.ipp-usb = { description = "Daemon for IPP over USB printer support"; - after = [ "cups.service" "avahi-deamon.service" ]; + after = [ "cups.service" "avahi-daemon.service" ]; wants = [ "avahi-daemon.service" ]; serviceConfig = { ExecStart = [ "${pkgs.ipp-usb}/bin/ipp-usb" ]; diff --git a/third_party/nixpkgs/nixos/modules/services/security/aesmd.nix b/third_party/nixpkgs/nixos/modules/services/security/aesmd.nix index 7b0a46d6d0..8b3f010d7c 100644 --- a/third_party/nixpkgs/nixos/modules/services/security/aesmd.nix +++ b/third_party/nixpkgs/nixos/modules/services/security/aesmd.nix @@ -25,6 +25,22 @@ in default = false; description = lib.mdDoc "Whether to build the PSW package in debug mode."; }; + environment = mkOption { + type = with types; attrsOf str; + default = { }; + description = mdDoc "Additional environment variables to pass to the AESM service."; + # Example environment variable for `sgx-azure-dcap-client` provider library + example = { + AZDCAP_COLLATERAL_VERSION = "v2"; + AZDCAP_DEBUG_LOG_LEVEL = "INFO"; + }; + }; + quoteProviderLibrary = mkOption { + type = with types; nullOr path; + default = null; + example = literalExpression "pkgs.sgx-azure-dcap-client"; + description = lib.mdDoc "Custom quote provider library to use."; + }; settings = mkOption { description = lib.mdDoc "AESM configuration"; default = { }; @@ -83,7 +99,6 @@ in storeAesmFolder = "${sgx-psw}/aesm"; # Hardcoded path AESM_DATA_FOLDER in psw/ae/aesm_service/source/oal/linux/aesm_util.cpp aesmDataFolder = "/var/opt/aesmd/data"; - aesmStateDirSystemd = "%S/aesmd"; in { description = "Intel Architectural Enclave Service Manager"; @@ -98,8 +113,8 @@ in environment = { NAME = "aesm_service"; AESM_PATH = storeAesmFolder; - LD_LIBRARY_PATH = storeAesmFolder; - }; + LD_LIBRARY_PATH = makeLibraryPath [ cfg.quoteProviderLibrary ]; + } // cfg.environment; # Make sure any of the SGX application enclave devices is available unitConfig.AssertPathExists = [ diff --git a/third_party/nixpkgs/nixos/modules/services/security/fail2ban.nix b/third_party/nixpkgs/nixos/modules/services/security/fail2ban.nix index e208eed008..3b124a4f0e 100644 --- a/third_party/nixpkgs/nixos/modules/services/security/fail2ban.nix +++ b/third_party/nixpkgs/nixos/modules/services/security/fail2ban.nix @@ -161,7 +161,7 @@ in type = types.str; example = "2 4 16 128"; description = lib.mdDoc '' - "bantime-increment.multipliers" used to calculate next value of ban time instead of formula, coresponding + "bantime-increment.multipliers" used to calculate next value of ban time instead of formula, corresponding previously ban count and given "bantime.factor" (for multipliers default is 1); following example grows ban time by 1, 2, 4, 8, 16 ... and if last ban count greater as multipliers count, always used last multiplier (64 in example), for factor '1' and original ban time 600 - 10.6 hours @@ -174,7 +174,7 @@ in example = true; description = lib.mdDoc '' "bantime-increment.overalljails" (if true) specifies the search of IP in the database will be executed - cross over all jails, if false (dafault), only current jail of the ban IP will be searched + cross over all jails, if false (default), only current jail of the ban IP will be searched ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/security/shibboleth-sp.nix b/third_party/nixpkgs/nixos/modules/services/security/shibboleth-sp.nix index 6626ea2136..e7897c3324 100644 --- a/third_party/nixpkgs/nixos/modules/services/security/shibboleth-sp.nix +++ b/third_party/nixpkgs/nixos/modules/services/security/shibboleth-sp.nix @@ -27,13 +27,13 @@ in { fastcgi.shibAuthorizerPort = mkOption { type = types.int; default = 9100; - description = lib.mdDoc "Port for shibauthorizer FastCGI proccess to bind to"; + description = lib.mdDoc "Port for shibauthorizer FastCGI process to bind to"; }; fastcgi.shibResponderPort = mkOption { type = types.int; default = 9101; - description = lib.mdDoc "Port for shibauthorizer FastCGI proccess to bind to"; + description = lib.mdDoc "Port for shibauthorizer FastCGI process to bind to"; }; }; }; diff --git a/third_party/nixpkgs/nixos/modules/services/security/tor.nix b/third_party/nixpkgs/nixos/modules/services/security/tor.nix index b85b78f269..2aa2964f88 100644 --- a/third_party/nixpkgs/nixos/modules/services/security/tor.nix +++ b/third_party/nixpkgs/nixos/modules/services/security/tor.nix @@ -146,7 +146,7 @@ let ]))]; description = lib.mdDoc (descriptionGeneric optionName); }; - optionBandwith = optionName: mkOption { + optionBandwidth = optionName: mkOption { type = with types; nullOr (either int str); default = null; description = lib.mdDoc (descriptionGeneric optionName); @@ -205,7 +205,7 @@ in (mkRemovedOptionModule [ "services" "tor" "client" "transparentProxy" "isolationOptions" ] "Use services.tor.settings.TransPort instead.") (mkRemovedOptionModule [ "services" "tor" "client" "transparentProxy" "listenAddress" ] "Use services.tor.settings.TransPort instead.") (mkRenamedOptionModule [ "services" "tor" "controlPort" ] [ "services" "tor" "settings" "ControlPort" ]) - (mkRemovedOptionModule [ "services" "tor" "extraConfig" ] "Plese use services.tor.settings instead.") + (mkRemovedOptionModule [ "services" "tor" "extraConfig" ] "Please use services.tor.settings instead.") (mkRenamedOptionModule [ "services" "tor" "hiddenServices" ] [ "services" "tor" "relay" "onionServices" ]) (mkRenamedOptionModule [ "services" "tor" "relay" "accountingMax" ] [ "services" "tor" "settings" "AccountingMax" ]) (mkRenamedOptionModule [ "services" "tor" "relay" "accountingStart" ] [ "services" "tor" "settings" "AccountingStart" ]) @@ -546,7 +546,7 @@ in }; options.Address = optionString "Address"; options.AssumeReachable = optionBool "AssumeReachable"; - options.AccountingMax = optionBandwith "AccountingMax"; + options.AccountingMax = optionBandwidth "AccountingMax"; options.AccountingStart = optionString "AccountingStart"; options.AuthDirHasIPv6Connectivity = optionBool "AuthDirHasIPv6Connectivity"; options.AuthDirListBadExits = optionBool "AuthDirListBadExits"; @@ -559,8 +559,8 @@ in default = [".onion" ".exit"]; example = [".onion"]; }; - options.BandwidthBurst = optionBandwith "BandwidthBurst"; - options.BandwidthRate = optionBandwith "BandwidthRate"; + options.BandwidthBurst = optionBandwidth "BandwidthBurst"; + options.BandwidthRate = optionBandwidth "BandwidthRate"; options.BridgeAuthoritativeDir = optionBool "BridgeAuthoritativeDir"; options.BridgeRecordUsageByCountry = optionBool "BridgeRecordUsageByCountry"; options.BridgeRelay = optionBool "BridgeRelay" // { default = false; }; @@ -709,7 +709,7 @@ in options.LogMessageDomains = optionBool "LogMessageDomains"; options.LongLivedPorts = optionPorts "LongLivedPorts"; options.MainloopStats = optionBool "MainloopStats"; - options.MaxAdvertisedBandwidth = optionBandwith "MaxAdvertisedBandwidth"; + options.MaxAdvertisedBandwidth = optionBandwidth "MaxAdvertisedBandwidth"; options.MaxCircuitDirtiness = optionInt "MaxCircuitDirtiness"; options.MaxClientCircuitsPending = optionInt "MaxClientCircuitsPending"; options.NATDPort = optionIsolablePorts "NATDPort"; @@ -719,8 +719,8 @@ in options.OfflineMasterKey = optionBool "OfflineMasterKey"; options.OptimisticData = optionBool "OptimisticData"; # default is null and like "auto" options.PaddingStatistics = optionBool "PaddingStatistics"; - options.PerConnBWBurst = optionBandwith "PerConnBWBurst"; - options.PerConnBWRate = optionBandwith "PerConnBWRate"; + options.PerConnBWBurst = optionBandwidth "PerConnBWBurst"; + options.PerConnBWRate = optionBandwidth "PerConnBWRate"; options.PidFile = optionPath "PidFile"; options.ProtocolWarnings = optionBool "ProtocolWarnings"; options.PublishHidServDescriptors = optionBool "PublishHidServDescriptors"; @@ -732,8 +732,8 @@ in options.ReducedExitPolicy = optionBool "ReducedExitPolicy"; options.RefuseUnknownExits = optionBool "RefuseUnknownExits"; # default is null and like "auto" options.RejectPlaintextPorts = optionPorts "RejectPlaintextPorts"; - options.RelayBandwidthBurst = optionBandwith "RelayBandwidthBurst"; - options.RelayBandwidthRate = optionBandwith "RelayBandwidthRate"; + options.RelayBandwidthBurst = optionBandwidth "RelayBandwidthBurst"; + options.RelayBandwidthRate = optionBandwidth "RelayBandwidthRate"; #options.RunAsDaemon options.Sandbox = optionBool "Sandbox"; options.ServerDNSAllowBrokenConfig = optionBool "ServerDNSAllowBrokenConfig"; diff --git a/third_party/nixpkgs/nixos/modules/services/security/usbguard.nix b/third_party/nixpkgs/nixos/modules/services/security/usbguard.nix index 1b1fa84c4f..1d846b1940 100644 --- a/third_party/nixpkgs/nixos/modules/services/security/usbguard.nix +++ b/third_party/nixpkgs/nixos/modules/services/security/usbguard.nix @@ -118,9 +118,9 @@ in description = lib.mdDoc '' The USBGuard daemon modifies some attributes of controller devices like the default authorization state of new child device - instances. Using this setting, you can controll whether the daemon + instances. Using this setting, you can control whether the daemon will try to restore the attribute values to the state before - modificaton on shutdown. + modification on shutdown. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/system/cachix-agent/default.nix b/third_party/nixpkgs/nixos/modules/services/system/cachix-agent/default.nix index aa3b215342..11769d4e30 100644 --- a/third_party/nixpkgs/nixos/modules/services/system/cachix-agent/default.nix +++ b/third_party/nixpkgs/nixos/modules/services/system/cachix-agent/default.nix @@ -67,7 +67,8 @@ in { serviceConfig = { # we don't want to kill children processes as those are deployments KillMode = "process"; - Restart = "on-failure"; + Restart = "always"; + RestartSec = 5; EnvironmentFile = cfg.credentialsFile; ExecStart = '' ${cfg.package}/bin/cachix ${lib.optionalString cfg.verbose "--verbose"} ${lib.optionalString (cfg.host != null) "--host ${cfg.host}"} \ diff --git a/third_party/nixpkgs/nixos/modules/services/system/cloud-init.nix b/third_party/nixpkgs/nixos/modules/services/system/cloud-init.nix index 30b2ca568e..d75070dea4 100644 --- a/third_party/nixpkgs/nixos/modules/services/system/cloud-init.nix +++ b/third_party/nixpkgs/nixos/modules/services/system/cloud-init.nix @@ -27,7 +27,7 @@ in This configuration is not completely compatible with the NixOS way of doing configuration, as configuration done by - cloud-init might be overriden by a subsequent nixos-rebuild + cloud-init might be overridden by a subsequent nixos-rebuild call. However, some parts of cloud-init fall outside of NixOS's responsibility, like filesystem resizing and ssh public key provisioning, and cloud-init is useful for that diff --git a/third_party/nixpkgs/nixos/modules/services/system/kerberos/default.nix b/third_party/nixpkgs/nixos/modules/services/system/kerberos/default.nix index 0c9e44a45c..4ed48e4637 100644 --- a/third_party/nixpkgs/nixos/modules/services/system/kerberos/default.nix +++ b/third_party/nixpkgs/nixos/modules/services/system/kerberos/default.nix @@ -51,7 +51,7 @@ in ###### interface options = { services.kerberos_server = { - enable = lib.mkEnableOption (lib.mdDoc "the kerberos authentification server"); + enable = lib.mkEnableOption (lib.mdDoc "the kerberos authentication server"); realms = mkOption { type = types.attrsOf (types.submodule realm); diff --git a/third_party/nixpkgs/nixos/modules/services/torrent/deluge.nix b/third_party/nixpkgs/nixos/modules/services/torrent/deluge.nix index 70fad4d7d7..de3d077dae 100644 --- a/third_party/nixpkgs/nixos/modules/services/torrent/deluge.nix +++ b/third_party/nixpkgs/nixos/modules/services/torrent/deluge.nix @@ -66,7 +66,7 @@ in { `true`. String values must be quoted, integer and boolean values must not. See - for the availaible options. + for the available options. ''; }; @@ -117,7 +117,7 @@ in { when {option}`services.deluge.declarative` is set to `true`. See for - more informations. + more information. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/torrent/magnetico.nix b/third_party/nixpkgs/nixos/modules/services/torrent/magnetico.nix index b681c58dfe..b813f12051 100644 --- a/third_party/nixpkgs/nixos/modules/services/torrent/magnetico.nix +++ b/third_party/nixpkgs/nixos/modules/services/torrent/magnetico.nix @@ -143,7 +143,7 @@ in { The path to the file holding the credentials to access the web interface. If unset no authentication will be required. - The file must constain user names and password hashes in the format + The file must contain user names and password hashes in the format `username:hash `, one for each line. Usernames must start with a lowecase ([a-z]) ASCII character, might contain non-consecutive underscores except at the end, and consists of diff --git a/third_party/nixpkgs/nixos/modules/services/torrent/rtorrent.nix b/third_party/nixpkgs/nixos/modules/services/torrent/rtorrent.nix index 935c11e3eb..627439e107 100644 --- a/third_party/nixpkgs/nixos/modules/services/torrent/rtorrent.nix +++ b/third_party/nixpkgs/nixos/modules/services/torrent/rtorrent.nix @@ -82,7 +82,7 @@ in { type = types.lines; default = ""; description = lib.mdDoc '' - The content of {file}`rtorrent.rc`. The [modernized configuration template](https://rtorrent-docs.readthedocs.io/en/latest/cookbook.html#modernized-configuration-template) with the values specified in this module will be prepended using mkBefore. You can use mkForce to overwrite the config completly. + The content of {file}`rtorrent.rc`. The [modernized configuration template](https://rtorrent-docs.readthedocs.io/en/latest/cookbook.html#modernized-configuration-template) with the values specified in this module will be prepended using mkBefore. You can use mkForce to overwrite the config completely. ''; }; }; diff --git a/third_party/nixpkgs/nixos/modules/services/torrent/transmission.nix b/third_party/nixpkgs/nixos/modules/services/torrent/transmission.nix index cba4afb79f..4378233848 100644 --- a/third_party/nixpkgs/nixos/modules/services/torrent/transmission.nix +++ b/third_party/nixpkgs/nixos/modules/services/torrent/transmission.nix @@ -44,7 +44,7 @@ in (each time the service starts). See [Transmission's Wiki](https://github.com/transmission/transmission/wiki/Editing-Configuration-Files) - for documentation of settings not explicitely covered by this module. + for documentation of settings not explicitly covered by this module. ''; default = {}; type = types.submodule { @@ -355,7 +355,7 @@ in PrivateUsers = true; ProtectClock = true; ProtectControlGroups = true; - # ProtectHome=true would not allow BindPaths= to work accross /home, + # ProtectHome=true would not allow BindPaths= to work across /home, # and ProtectHome=tmpfs would break statfs(), # preventing transmission-daemon to report the available free space. # However, RootDirectory= is used, so this is not a security concern diff --git a/third_party/nixpkgs/nixos/modules/services/video/unifi-video.nix b/third_party/nixpkgs/nixos/modules/services/video/unifi-video.nix index 450e92dd9a..93d4d5060b 100644 --- a/third_party/nixpkgs/nixos/modules/services/video/unifi-video.nix +++ b/third_party/nixpkgs/nixos/modules/services/video/unifi-video.nix @@ -159,7 +159,7 @@ in default = 1024; example = 4096; description = lib.mdDoc '' - Set the maximimum heap size for the JVM in MB. + Set the maximum heap size for the JVM in MB. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/akkoma.md b/third_party/nixpkgs/nixos/modules/services/web-apps/akkoma.md new file mode 100644 index 0000000000..fc849be0c8 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/akkoma.md @@ -0,0 +1,332 @@ +# Akkoma {#module-services-akkoma} + +[Akkoma](https://akkoma.dev/) is a lightweight ActivityPub microblogging server forked from Pleroma. + +## Service configuration {#modules-services-akkoma-service-configuration} + +The Elixir configuration file required by Akkoma is generated automatically from +[{option}`services.akkoma.config`](options.html#opt-services.akkoma.config). Secrets must be +included from external files outside of the Nix store by setting the configuration option to +an attribute set containing the attribute {option}`_secret` – a string pointing to the file +containing the actual value of the option. + +For the mandatory configuration settings these secrets will be generated automatically if the +referenced file does not exist during startup, unless disabled through +[{option}`services.akkoma.initSecrets`](options.html#opt-services.akkoma.initSecrets). + +The following configuration binds Akkoma to the Unix socket `/run/akkoma/socket`, expecting to +be run behind a HTTP proxy on `fediverse.example.com`. + + +```nix +services.akkoma.enable = true; +services.akkoma.config = { + ":pleroma" = { + ":instance" = { + name = "My Akkoma instance"; + description = "More detailed description"; + email = "admin@example.com"; + registration_open = false; + }; + + "Pleroma.Web.Endpoint" = { + url.host = "fediverse.example.com"; + }; + }; +}; +``` + +Please refer to the [configuration cheat sheet](https://docs.akkoma.dev/stable/configuration/cheatsheet/) +for additional configuration options. + +## User management {#modules-services-akkoma-user-management} + +After the Akkoma service is running, the administration utility can be used to +[manage users](https://docs.akkoma.dev/stable/administration/CLI_tasks/user/). In particular an +administrative user can be created with + +```ShellSession +$ pleroma_ctl user new --admin --moderator --password +``` + +## Proxy configuration {#modules-services-akkoma-proxy-configuration} + +Although it is possible to expose Akkoma directly, it is common practice to operate it behind an +HTTP reverse proxy such as nginx. + +```nix +services.akkoma.nginx = { + enableACME = true; + forceSSL = true; +}; + +services.nginx = { + enable = true; + + clientMaxBodySize = "16m"; + recommendedTlsSettings = true; + recommendedOptimisation = true; + recommendedGzipSettings = true; +}; +``` + +Please refer to [](#module-security-acme) for details on how to provision an SSL/TLS certificate. + +### Media proxy {#modules-services-akkoma-media-proxy} + +Without the media proxy function, Akkoma does not store any remote media like pictures or video +locally, and clients have to fetch them directly from the source server. + +```nix +# Enable nginx slice module distributed with Tengine +services.nginx.package = pkgs.tengine; + +# Enable media proxy +services.akkoma.config.":pleroma".":media_proxy" = { + enabled = true; + proxy_opts.redirect_on_failure = true; +}; + +# Adjust the persistent cache size as needed: +# Assuming an average object size of 128 KiB, around 1 MiB +# of memory is required for the key zone per GiB of cache. +# Ensure that the cache directory exists and is writable by nginx. +services.nginx.commonHttpConfig = '' + proxy_cache_path /var/cache/nginx/cache/akkoma-media-cache + levels= keys_zone=akkoma_media_cache:16m max_size=16g + inactive=1y use_temp_path=off; +''; + +services.akkoma.nginx = { + locations."/proxy" = { + proxyPass = "http://unix:/run/akkoma/socket"; + + extraConfig = '' + proxy_cache akkoma_media_cache; + + # Cache objects in slices of 1 MiB + slice 1m; + proxy_cache_key $host$uri$is_args$args$slice_range; + proxy_set_header Range $slice_range; + + # Decouple proxy and upstream responses + proxy_buffering on; + proxy_cache_lock on; + proxy_ignore_client_abort on; + + # Default cache times for various responses + proxy_cache_valid 200 1y; + proxy_cache_valid 206 301 304 1h; + + # Allow serving of stale items + proxy_cache_use_stale error timeout invalid_header updating; + ''; + }; +}; +``` + +#### Prefetch remote media {#modules-services-akkoma-prefetch-remote-media} + +The following example enables the `MediaProxyWarmingPolicy` MRF policy which automatically +fetches all media associated with a post through the media proxy, as soon as the post is +received by the instance. + +```nix +services.akkoma.config.":pleroma".":mrf".policies = + map (pkgs.formats.elixirConf { }).lib.mkRaw [ + "Pleroma.Web.ActivityPub.MRF.MediaProxyWarmingPolicy" +]; +``` + +#### Media previews {#modules-services-akkoma-media-previews} + +Akkoma can generate previews for media. + +```nix +services.akkoma.config.":pleroma".":media_preview_proxy" = { + enabled = true; + thumbnail_max_width = 1920; + thumbnail_max_height = 1080; +}; +``` + +## Frontend management {#modules-services-akkoma-frontend-management} + +Akkoma will be deployed with the `pleroma-fe` and `admin-fe` frontends by default. These can be +modified by setting +[{option}`services.akkoma.frontends`](options.html#opt-services.akkoma.frontends). + +The following example overrides the primary frontend’s default configuration using a custom +derivation. + +```nix +services.akkoma.frontends.primary.package = pkgs.runCommand "pleroma-fe" { + config = builtins.toJSON { + expertLevel = 1; + collapseMessageWithSubject = false; + stopGifs = false; + replyVisibility = "following"; + webPushHideIfCW = true; + hideScopeNotice = true; + renderMisskeyMarkdown = false; + hideSiteFavicon = true; + postContentType = "text/markdown"; + showNavShortcuts = false; + }; + nativeBuildInputs = with pkgs; [ jq xorg.lndir ]; + passAsFile = [ "config" ]; +} '' + mkdir $out + lndir ${pkgs.akkoma-frontends.pleroma-fe} $out + + rm $out/static/config.json + jq -s add ${pkgs.akkoma-frontends.pleroma-fe}/static/config.json ${config} \ + >$out/static/config.json +''; +``` + +## Federation policies {#modules-services-akkoma-federation-policies} + +Akkoma comes with a number of modules to police federation with other ActivityPub instances. +The most valuable for typical users is the +[`:mrf_simple`](https://docs.akkoma.dev/stable/configuration/cheatsheet/#mrf_simple) module +which allows limiting federation based on instance hostnames. + +This configuration snippet provides an example on how these can be used. Choosing an adequate +federation policy is not trivial and entails finding a balance between connectivity to the rest +of the fediverse and providing a pleasant experience to the users of an instance. + + +```nix +services.akkoma.config.":pleroma" = with (pkgs.formats.elixirConf { }).lib; { + ":mrf".policies = map mkRaw [ + "Pleroma.Web.ActivityPub.MRF.SimplePolicy" + ]; + + ":mrf_simple" = { + # Tag all media as sensitive + media_nsfw = mkMap { + "nsfw.weird.kinky" = "Untagged NSFW content"; + }; + + # Reject all activities except deletes + reject = mkMap { + "kiwifarms.cc" = "Persistent harassment of users, no moderation"; + }; + + # Force posts to be visible by followers only + followers_only = mkMap { + "beta.birdsite.live" = "Avoid polluting timelines with Twitter posts"; + }; + }; +}; +``` + +## Upload filters {#modules-services-akkoma-upload-filters} + +This example strips GPS and location metadata from uploads, deduplicates them and anonymises the +the file name. + +```nix +services.akkoma.config.":pleroma"."Pleroma.Upload".filters = + map (pkgs.formats.elixirConf { }).lib.mkRaw [ + "Pleroma.Upload.Filter.Exiftool" + "Pleroma.Upload.Filter.Dedupe" + "Pleroma.Upload.Filter.AnonymizeFilename" + ]; +``` + +## Migration from Pleroma {#modules-services-akkoma-migration-pleroma} + +Pleroma instances can be migrated to Akkoma either by copying the database and upload data or by +pointing Akkoma to the existing data. The necessary database migrations are run automatically +during startup of the service. + +The configuration has to be copy‐edited manually. + +Depending on the size of the database, the initial migration may take a long time and exceed the +startup timeout of the system manager. To work around this issue one may adjust the startup timeout +{option}`systemd.services.akkoma.serviceConfig.TimeoutStartSec` or simply run the migrations +manually: + +```ShellSession +pleroma_ctl migrate +``` + +### Copying data {#modules-services-akkoma-migration-pleroma-copy} + +Copying the Pleroma data instead of re‐using it in place may permit easier reversion to Pleroma, +but allows the two data sets to diverge. + +First disable Pleroma and then copy its database and upload data: + +```ShellSession +# Create a copy of the database +nix-shell -p postgresql --run 'createdb -T pleroma akkoma' + +# Copy upload data +mkdir /var/lib/akkoma +cp -R --reflink=auto /var/lib/pleroma/uploads /var/lib/akkoma/ +``` + +After the data has been copied, enable the Akkoma service and verify that the migration has been +successful. If no longer required, the original data may then be deleted: + +```ShellSession +# Delete original database +nix-shell -p postgresql --run 'dropdb pleroma' + +# Delete original Pleroma state +rm -r /var/lib/pleroma +``` + +### Re‐using data {#modules-services-akkoma-migration-pleroma-reuse} + +To re‐use the Pleroma data in place, disable Pleroma and enable Akkoma, pointing it to the +Pleroma database and upload directory. + +```nix +# Adjust these settings according to the database name and upload directory path used by Pleroma +services.akkoma.config.":pleroma"."Pleroma.Repo".database = "pleroma"; +services.akkoma.config.":pleroma".":instance".upload_dir = "/var/lib/pleroma/uploads"; +``` + +Please keep in mind that after the Akkoma service has been started, any migrations applied by +Akkoma have to be rolled back before the database can be used again with Pleroma. This can be +achieved through `pleroma_ctl ecto.rollback`. Refer to the +[Ecto SQL documentation](https://hexdocs.pm/ecto_sql/Mix.Tasks.Ecto.Rollback.html) for +details. + +## Advanced deployment options {#modules-services-akkoma-advanced-deployment} + +### Confinement {#modules-services-akkoma-confinement} + +The Akkoma systemd service may be confined to a chroot with + +```nix +services.systemd.akkoma.confinement.enable = true; +``` + +Confinement of services is not generally supported in NixOS and therefore disabled by default. +Depending on the Akkoma configuration, the default confinement settings may be insufficient and +lead to subtle errors at run time, requiring adjustment: + +Use +[{option}`services.systemd.akkoma.confinement.packages`](options.html#opt-systemd.services._name_.confinement.packages) +to make packages available in the chroot. + +{option}`services.systemd.akkoma.serviceConfig.BindPaths` and +{option}`services.systemd.akkoma.serviceConfig.BindReadOnlyPaths` permit access to outside paths +through bind mounts. Refer to +[{manpage}`systemd.exec(5)`](https://www.freedesktop.org/software/systemd/man/systemd.exec.html#BindPaths=) +for details. + +### Distributed deployment {#modules-services-akkoma-distributed-deployment} + +Being an Elixir application, Akkoma can be deployed in a distributed fashion. + +This requires setting +[{option}`services.akkoma.dist.address`](options.html#opt-services.akkoma.dist.address) and +[{option}`services.akkoma.dist.cookie`](options.html#opt-services.akkoma.dist.cookie). The +specifics depend strongly on the deployment environment. For more information please check the +relevant [Erlang documentation](https://www.erlang.org/doc/reference_manual/distributed.html). diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/akkoma.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/akkoma.nix new file mode 100644 index 0000000000..47ba53e422 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/akkoma.nix @@ -0,0 +1,1086 @@ +{ config, lib, pkgs, ... }: + +with lib; +let + cfg = config.services.akkoma; + ex = cfg.config; + db = ex.":pleroma"."Pleroma.Repo"; + web = ex.":pleroma"."Pleroma.Web.Endpoint"; + + isConfined = config.systemd.services.akkoma.confinement.enable; + hasSmtp = (attrByPath [ ":pleroma" "Pleroma.Emails.Mailer" "adapter" "value" ] null ex) == "Swoosh.Adapters.SMTP"; + + isAbsolutePath = v: isString v && substring 0 1 v == "/"; + isSecret = v: isAttrs v && v ? _secret && isAbsolutePath v._secret; + + absolutePath = with types; mkOptionType { + name = "absolutePath"; + description = "absolute path"; + descriptionClass = "noun"; + check = isAbsolutePath; + inherit (str) merge; + }; + + secret = mkOptionType { + name = "secret"; + description = "secret value"; + descriptionClass = "noun"; + check = isSecret; + nestedTypes = { + _secret = absolutePath; + }; + }; + + ipAddress = with types; mkOptionType { + name = "ipAddress"; + description = "IPv4 or IPv6 address"; + descriptionClass = "conjunction"; + check = x: str.check x && builtins.match "[.0-9:A-Fa-f]+" x != null; + inherit (str) merge; + }; + + elixirValue = let + elixirValue' = with types; + nullOr (oneOf [ bool int float str (attrsOf elixirValue') (listOf elixirValue') ]) // { + description = "Elixir value"; + }; + in elixirValue'; + + frontend = { + options = { + package = mkOption { + type = types.package; + description = mdDoc "Akkoma frontend package."; + example = literalExpression "pkgs.akkoma-frontends.pleroma-fe"; + }; + + name = mkOption { + type = types.nonEmptyStr; + description = mdDoc "Akkoma frontend name."; + example = "pleroma-fe"; + }; + + ref = mkOption { + type = types.nonEmptyStr; + description = mdDoc "Akkoma frontend reference."; + example = "stable"; + }; + }; + }; + + sha256 = builtins.hashString "sha256"; + + replaceSec = let + replaceSec' = { }@args: v: + if isAttrs v + then if v ? _secret + then if isAbsolutePath v._secret + then sha256 v._secret + else abort "Invalid secret path (_secret = ${v._secret})" + else mapAttrs (_: val: replaceSec' args val) v + else if isList v + then map (replaceSec' args) v + else v; + in replaceSec' { }; + + # Erlang/Elixir uses a somewhat special format for IP addresses + erlAddr = addr: fileContents + (pkgs.runCommand addr { + nativeBuildInputs = with pkgs; [ elixir ]; + code = '' + case :inet.parse_address('${addr}') do + {:ok, addr} -> IO.inspect addr + {:error, _} -> System.halt(65) + end + ''; + passAsFile = [ "code" ]; + } ''elixir "$codePath" >"$out"''); + + format = pkgs.formats.elixirConf { }; + configFile = format.generate "config.exs" + (replaceSec + (attrsets.updateManyAttrsByPath [{ + path = [ ":pleroma" "Pleroma.Web.Endpoint" "http" "ip" ]; + update = addr: + if isAbsolutePath addr + then format.lib.mkTuple + [ (format.lib.mkAtom ":local") addr ] + else format.lib.mkRaw (erlAddr addr); + }] cfg.config)); + + writeShell = { name, text, runtimeInputs ? [ ] }: + pkgs.writeShellApplication { inherit name text runtimeInputs; } + "/bin/${name}"; + + genScript = writeShell { + name = "akkoma-gen-cookie"; + runtimeInputs = with pkgs; [ coreutils util-linux ]; + text = '' + install -m 0400 \ + -o ${escapeShellArg cfg.user } \ + -g ${escapeShellArg cfg.group} \ + <(hexdump -n 16 -e '"%02x"' /dev/urandom) \ + "$RUNTIME_DIRECTORY/cookie" + ''; + }; + + copyScript = writeShell { + name = "akkoma-copy-cookie"; + runtimeInputs = with pkgs; [ coreutils ]; + text = '' + install -m 0400 \ + -o ${escapeShellArg cfg.user} \ + -g ${escapeShellArg cfg.group} \ + ${escapeShellArg cfg.dist.cookie._secret} \ + "$RUNTIME_DIRECTORY/cookie" + ''; + }; + + secretPaths = catAttrs "_secret" (collect isSecret cfg.config); + + vapidKeygen = pkgs.writeText "vapidKeygen.exs" '' + [public_path, private_path] = System.argv() + {public_key, private_key} = :crypto.generate_key :ecdh, :prime256v1 + File.write! public_path, Base.url_encode64(public_key, padding: false) + File.write! private_path, Base.url_encode64(private_key, padding: false) + ''; + + initSecretsScript = writeShell { + name = "akkoma-init-secrets"; + runtimeInputs = with pkgs; [ coreutils elixir ]; + text = let + key-base = web.secret_key_base; + jwt-signer = ex.":joken".":default_signer"; + signing-salt = web.signing_salt; + liveview-salt = web.live_view.signing_salt; + vapid-private = ex.":web_push_encryption".":vapid_details".private_key; + vapid-public = ex.":web_push_encryption".":vapid_details".public_key; + in '' + secret() { + # Generate default secret if non‐existent + test -e "$2" || install -D -m 0600 <(tr -dc 'A-Za-z-._~' &2 + exit 65 + fi + } + + secret 64 ${escapeShellArg key-base._secret} + secret 64 ${escapeShellArg jwt-signer._secret} + secret 8 ${escapeShellArg signing-salt._secret} + secret 8 ${escapeShellArg liveview-salt._secret} + + ${optionalString (isSecret vapid-public) '' + { test -e ${escapeShellArg vapid-private._secret} && \ + test -e ${escapeShellArg vapid-public._secret}; } || \ + elixir ${escapeShellArgs [ vapidKeygen vapid-public._secret vapid-private._secret ]} + ''} + ''; + }; + + configScript = writeShell { + name = "akkoma-config"; + runtimeInputs = with pkgs; [ coreutils replace-secret ]; + text = '' + cd "$RUNTIME_DIRECTORY" + tmp="$(mktemp config.exs.XXXXXXXXXX)" + trap 'rm -f "$tmp"' EXIT TERM + + cat ${escapeShellArg configFile} >"$tmp" + ${concatMapStrings (file: '' + replace-secret ${escapeShellArgs [ (sha256 file) file ]} "$tmp" + '') secretPaths} + + chown ${escapeShellArg cfg.user}:${escapeShellArg cfg.group} "$tmp" + chmod 0400 "$tmp" + mv -f "$tmp" config.exs + ''; + }; + + pgpass = let + esc = escape [ ":" ''\'' ]; + in if (cfg.initDb.password != null) + then pkgs.writeText "pgpass.conf" '' + *:*:*${esc cfg.initDb.username}:${esc (sha256 cfg.initDb.password._secret)} + '' + else null; + + escapeSqlId = x: ''"${replaceStrings [ ''"'' ] [ ''""'' ] x}"''; + escapeSqlStr = x: "'${replaceStrings [ "'" ] [ "''" ] x}'"; + + setupSql = pkgs.writeText "setup.psql" '' + \set ON_ERROR_STOP on + + ALTER ROLE ${escapeSqlId db.username} + LOGIN PASSWORD ${if db ? password + then "${escapeSqlStr (sha256 db.password._secret)}" + else "NULL"}; + + ALTER DATABASE ${escapeSqlId db.database} + OWNER TO ${escapeSqlId db.username}; + + \connect ${escapeSqlId db.database} + CREATE EXTENSION IF NOT EXISTS citext; + CREATE EXTENSION IF NOT EXISTS pg_trgm; + CREATE EXTENSION IF NOT EXISTS "uuid-ossp"; + ''; + + dbHost = if db ? socket_dir then db.socket_dir + else if db ? socket then db.socket + else if db ? hostname then db.hostname + else null; + + initDbScript = writeShell { + name = "akkoma-initdb"; + runtimeInputs = with pkgs; [ coreutils replace-secret config.services.postgresql.package ]; + text = '' + pgpass="$(mktemp -t pgpass-XXXXXXXXXX.conf)" + setupSql="$(mktemp -t setup-XXXXXXXXXX.psql)" + trap 'rm -f "$pgpass $setupSql"' EXIT TERM + + ${optionalString (dbHost != null) '' + export PGHOST=${escapeShellArg dbHost} + ''} + export PGUSER=${escapeShellArg cfg.initDb.username} + ${optionalString (pgpass != null) '' + cat ${escapeShellArg pgpass} >"$pgpass" + replace-secret ${escapeShellArgs [ + (sha256 cfg.initDb.password._secret) cfg.initDb.password._secret ]} "$pgpass" + export PGPASSFILE="$pgpass" + ''} + + cat ${escapeShellArg setupSql} >"$setupSql" + ${optionalString (db ? password) '' + replace-secret ${escapeShellArgs [ + (sha256 db.password._secret) db.password._secret ]} "$setupSql" + ''} + + # Create role if non‐existent + psql -tAc "SELECT 1 FROM pg_roles + WHERE rolname = "${escapeShellArg (escapeSqlStr db.username)} | grep -F -q 1 || \ + psql -tAc "CREATE ROLE "${escapeShellArg (escapeSqlId db.username)} + + # Create database if non‐existent + psql -tAc "SELECT 1 FROM pg_database + WHERE datname = "${escapeShellArg (escapeSqlStr db.database)} | grep -F -q 1 || \ + psql -tAc "CREATE DATABASE "${escapeShellArg (escapeSqlId db.database)}" + OWNER "${escapeShellArg (escapeSqlId db.username)}" + TEMPLATE template0 + ENCODING 'utf8' + LOCALE 'C'" + + psql -f "$setupSql" + ''; + }; + + envWrapper = let + script = writeShell { + name = "akkoma-env"; + text = '' + cd "${cfg.package}" + + RUNTIME_DIRECTORY="''${RUNTIME_DIRECTORY:-/run/akkoma}" + AKKOMA_CONFIG_PATH="$RUNTIME_DIRECTORY/config.exs" \ + ERL_EPMD_ADDRESS="${cfg.dist.address}" \ + ERL_EPMD_PORT="${toString cfg.dist.epmdPort}" \ + ERL_FLAGS="${concatStringsSep " " [ + "-kernel inet_dist_use_interface '${erlAddr cfg.dist.address}'" + "-kernel inet_dist_listen_min ${toString cfg.dist.portMin}" + "-kernel inet_dist_listen_max ${toString cfg.dist.portMax}" + ]}" \ + RELEASE_COOKIE="$(<"$RUNTIME_DIRECTORY/cookie")" \ + RELEASE_NAME="akkoma" \ + exec "${cfg.package}/bin/$(basename "$0")" "$@" + ''; + }; + in pkgs.runCommandLocal "akkoma-env" { } '' + mkdir -p "$out/bin" + + ln -r -s ${escapeShellArg script} "$out/bin/pleroma" + ln -r -s ${escapeShellArg script} "$out/bin/pleroma_ctl" + ''; + + userWrapper = pkgs.writeShellApplication { + name = "pleroma_ctl"; + text = '' + if [ "''${1-}" == "update" ]; then + echo "OTP releases are not supported on NixOS." >&2 + exit 64 + fi + + exec sudo -u ${escapeShellArg cfg.user} \ + "${envWrapper}/bin/pleroma_ctl" "$@" + ''; + }; + + socketScript = if isAbsolutePath web.http.ip + then writeShell { + name = "akkoma-socket"; + runtimeInputs = with pkgs; [ coreutils inotify-tools ]; + text = '' + coproc { + inotifywait -q -m -e create ${escapeShellArg (dirOf web.http.ip)} + } + + trap 'kill "$COPROC_PID"' EXIT TERM + + until test -S ${escapeShellArg web.http.ip} + do read -r -u "''${COPROC[0]}" + done + + chmod 0666 ${escapeShellArg web.http.ip} + ''; + } + else null; + + staticDir = ex.":pleroma".":instance".static_dir; + uploadDir = ex.":pleroma".":instance".upload_dir; + + staticFiles = pkgs.runCommandLocal "akkoma-static" { } '' + ${concatStringsSep "\n" (mapAttrsToList (key: val: '' + mkdir -p $out/frontends/${escapeShellArg val.name}/ + ln -s ${escapeShellArg val.package} $out/frontends/${escapeShellArg val.name}/${escapeShellArg val.ref} + '') cfg.frontends)} + + ${optionalString (cfg.extraStatic != null) + (concatStringsSep "\n" (mapAttrsToList (key: val: '' + mkdir -p "$out/$(dirname ${escapeShellArg key})" + ln -s ${escapeShellArg val} $out/${escapeShellArg key} + '') cfg.extraStatic))} + ''; +in { + options = { + services.akkoma = { + enable = mkEnableOption (mdDoc "Akkoma"); + + package = mkOption { + type = types.package; + default = pkgs.akkoma; + defaultText = literalExpression "pkgs.akkoma"; + description = mdDoc "Akkoma package to use."; + }; + + user = mkOption { + type = types.nonEmptyStr; + default = "akkoma"; + description = mdDoc "User account under which Akkoma runs."; + }; + + group = mkOption { + type = types.nonEmptyStr; + default = "akkoma"; + description = mdDoc "Group account under which Akkoma runs."; + }; + + initDb = { + enable = mkOption { + type = types.bool; + default = true; + description = mdDoc '' + Whether to automatically initialise the database on startup. This will create a + database role and database if they do not already exist, and (re)set the role password + and the ownership of the database. + + This setting can be used safely even if the database already exists and contains data. + + The database settings are configured through + [{option}`config.services.akkoma.config.":pleroma"."Pleroma.Repo"`](#opt-services.akkoma.config.__pleroma_._Pleroma.Repo_). + + If disabled, the database has to be set up manually: + + ```SQL + CREATE ROLE akkoma LOGIN; + + CREATE DATABASE akkoma + OWNER akkoma + TEMPLATE template0 + ENCODING 'utf8' + LOCALE 'C'; + + \connect akkoma + CREATE EXTENSION IF NOT EXISTS citext; + CREATE EXTENSION IF NOT EXISTS pg_trgm; + CREATE EXTENSION IF NOT EXISTS "uuid-ossp"; + ``` + ''; + }; + + username = mkOption { + type = types.nonEmptyStr; + default = config.services.postgresql.superUser; + defaultText = literalExpression "config.services.postgresql.superUser"; + description = mdDoc '' + Name of the database user to initialise the database with. + + This user is required to have the `CREATEROLE` and `CREATEDB` capabilities. + ''; + }; + + password = mkOption { + type = types.nullOr secret; + default = null; + description = mdDoc '' + Password of the database user to initialise the database with. + + If set to `null`, no password will be used. + + The attribute `_secret` should point to a file containing the secret. + ''; + }; + }; + + initSecrets = mkOption { + type = types.bool; + default = true; + description = mdDoc '' + Whether to initialise non‐existent secrets with random values. + + If enabled, appropriate secrets for the following options will be created automatically + if the files referenced in the `_secrets` attribute do not exist during startup. + + - {option}`config.":pleroma"."Pleroma.Web.Endpoint".secret_key_base` + - {option}`config.":pleroma"."Pleroma.Web.Endpoint".signing_salt` + - {option}`config.":pleroma"."Pleroma.Web.Endpoint".live_view.signing_salt` + - {option}`config.":web_push_encryption".":vapid_details".private_key` + - {option}`config.":web_push_encryption".":vapid_details".public_key` + - {option}`config.":joken".":default_signer"` + ''; + }; + + installWrapper = mkOption { + type = types.bool; + default = true; + description = mdDoc '' + Whether to install a wrapper around `pleroma_ctl` to simplify administration of the + Akkoma instance. + ''; + }; + + extraPackages = mkOption { + type = with types; listOf package; + default = with pkgs; [ exiftool ffmpeg_5-headless graphicsmagick-imagemagick-compat ]; + defaultText = literalExpression "with pkgs; [ exiftool graphicsmagick-imagemagick-compat ffmpeg_5-headless ]"; + example = literalExpression "with pkgs; [ exiftool imagemagick ffmpeg_5-full ]"; + description = mdDoc '' + List of extra packages to include in the executable search path of the service unit. + These are needed by various configurable components such as: + + - ExifTool for the `Pleroma.Upload.Filter.Exiftool` upload filter, + - ImageMagick for still image previews in the media proxy as well as for the + `Pleroma.Upload.Filters.Mogrify` upload filter, and + - ffmpeg for video previews in the media proxy. + ''; + }; + + frontends = mkOption { + description = mdDoc "Akkoma frontends."; + type = with types; attrsOf (submodule frontend); + default = { + primary = { + package = pkgs.akkoma-frontends.pleroma-fe; + name = "pleroma-fe"; + ref = "stable"; + }; + admin = { + package = pkgs.akkoma-frontends.admin-fe; + name = "admin-fe"; + ref = "stable"; + }; + }; + defaultText = literalExpression '' + { + primary = { + package = pkgs.akkoma-frontends.pleroma-fe; + name = "pleroma-fe"; + ref = "stable"; + }; + admin = { + package = pkgs.akkoma-frontends.admin-fe; + name = "admin-fe"; + ref = "stable"; + }; + } + ''; + }; + + extraStatic = mkOption { + type = with types; nullOr (attrsOf package); + description = mdDoc '' + Attribute set of extra packages to add to the static files directory. + + Do not add frontends here. These should be configured through + [{option}`services.akkoma.frontends`](#opt-services.akkoma.frontends). + ''; + default = null; + example = literalExpression '' + { + "emoji/blobs.gg" = pkgs.akkoma-emoji.blobs_gg; + "static/terms-of-service.html" = pkgs.writeText "terms-of-service.html" ''' + … + '''; + "favicon.png" = let + rev = "697a8211b0f427a921e7935a35d14bb3e32d0a2c"; + in pkgs.stdenvNoCC.mkDerivation { + name = "favicon.png"; + + src = pkgs.fetchurl { + url = "https://raw.githubusercontent.com/TilCreator/NixOwO/''${rev}/NixOwO_plain.svg"; + hash = "sha256-tWhHMfJ3Od58N9H5yOKPMfM56hYWSOnr/TGCBi8bo9E="; + }; + + nativeBuildInputs = with pkgs; [ librsvg ]; + + dontUnpack = true; + installPhase = ''' + rsvg-convert -o $out -w 96 -h 96 $src + '''; + }; + } + ''; + }; + + dist = { + address = mkOption { + type = ipAddress; + default = "127.0.0.1"; + description = mdDoc '' + Listen address for Erlang distribution protocol and Port Mapper Daemon (epmd). + ''; + }; + + epmdPort = mkOption { + type = types.port; + default = 4369; + description = mdDoc "TCP port to bind Erlang Port Mapper Daemon to."; + }; + + portMin = mkOption { + type = types.port; + default = 49152; + description = mdDoc "Lower bound for Erlang distribution protocol TCP port."; + }; + + portMax = mkOption { + type = types.port; + default = 65535; + description = mdDoc "Upper bound for Erlang distribution protocol TCP port."; + }; + + cookie = mkOption { + type = types.nullOr secret; + default = null; + example = { _secret = "/var/lib/secrets/akkoma/releaseCookie"; }; + description = mdDoc '' + Erlang release cookie. + + If set to `null`, a temporary random cookie will be generated. + ''; + }; + }; + + config = mkOption { + description = mdDoc '' + Configuration for Akkoma. The attributes are serialised to Elixir DSL. + + Refer to for + configuration options. + + Settings containing secret data should be set to an attribute set containing the + attribute `_secret` - a string pointing to a file containing the value the option + should be set to. + ''; + type = types.submodule { + freeformType = format.type; + options = { + ":pleroma" = { + ":instance" = { + name = mkOption { + type = types.nonEmptyStr; + description = mdDoc "Instance name."; + }; + + email = mkOption { + type = types.nonEmptyStr; + description = mdDoc "Instance administrator email."; + }; + + description = mkOption { + type = types.nonEmptyStr; + description = mdDoc "Instance description."; + }; + + static_dir = mkOption { + type = types.path; + default = toString staticFiles; + defaultText = literalMD '' + Derivation gathering the following paths into a directory: + + - [{option}`services.akkoma.frontends`](#opt-services.akkoma.frontends) + - [{option}`services.akkoma.extraStatic`](#opt-services.akkoma.extraStatic) + ''; + description = mdDoc '' + Directory of static files. + + This directory can be built using a derivation, or it can be managed as mutable + state by setting the option to an absolute path. + ''; + }; + + upload_dir = mkOption { + type = absolutePath; + default = "/var/lib/akkoma/uploads"; + description = mdDoc '' + Directory where Akkoma will put uploaded files. + ''; + }; + }; + + "Pleroma.Repo" = mkOption { + type = elixirValue; + default = { + adapter = format.lib.mkRaw "Ecto.Adapters.Postgres"; + socket_dir = "/run/postgresql"; + username = cfg.user; + database = "akkoma"; + }; + defaultText = literalExpression '' + { + adapter = (pkgs.formats.elixirConf { }).lib.mkRaw "Ecto.Adapters.Postgres"; + socket_dir = "/run/postgresql"; + username = config.services.akkoma.user; + database = "akkoma"; + } + ''; + description = mdDoc '' + Database configuration. + + Refer to + + for options. + ''; + }; + + "Pleroma.Web.Endpoint" = { + url = { + host = mkOption { + type = types.nonEmptyStr; + default = config.networking.fqdn; + defaultText = literalExpression "config.networking.fqdn"; + description = mdDoc "Domain name of the instance."; + }; + + scheme = mkOption { + type = types.nonEmptyStr; + default = "https"; + description = mdDoc "URL scheme."; + }; + + port = mkOption { + type = types.port; + default = 443; + description = mdDoc "External port number."; + }; + }; + + http = { + ip = mkOption { + type = types.either absolutePath ipAddress; + default = "/run/akkoma/socket"; + example = "::1"; + description = mdDoc '' + Listener IP address or Unix socket path. + + The value is automatically converted to Elixir’s internal address + representation during serialisation. + ''; + }; + + port = mkOption { + type = types.port; + default = if isAbsolutePath web.http.ip then 0 else 4000; + defaultText = literalExpression '' + if isAbsolutePath config.services.akkoma.config.:pleroma"."Pleroma.Web.Endpoint".http.ip + then 0 + else 4000; + ''; + description = mdDoc '' + Listener port number. + + Must be 0 if using a Unix socket. + ''; + }; + }; + + secret_key_base = mkOption { + type = secret; + default = { _secret = "/var/lib/secrets/akkoma/key-base"; }; + description = mdDoc '' + Secret key used as a base to generate further secrets for encrypting and + signing data. + + The attribute `_secret` should point to a file containing the secret. + + This key can generated can be generated as follows: + + ```ShellSession + $ tr -dc 'A-Za-z-._~' + for options. + ''; + }; + }; + }; + + ":tzdata" = { + ":data_dir" = mkOption { + type = elixirValue; + internal = true; + default = format.lib.mkRaw '' + Path.join(System.fetch_env!("CACHE_DIRECTORY"), "tzdata") + ''; + }; + }; + }; + }; + }; + + nginx = mkOption { + type = with types; nullOr (submodule + (import ../web-servers/nginx/vhost-options.nix { inherit config lib; })); + default = null; + description = mdDoc '' + Extra configuration for the nginx virtual host of Akkoma. + + If set to `null`, no virtual host will be added to the nginx configuration. + ''; + }; + }; + }; + + config = mkIf cfg.enable { + warnings = optionals (!config.security.sudo.enable) ['' + The pleroma_ctl wrapper enabled by the installWrapper option relies on + sudo, which appears to have been disabled through security.sudo.enable. + '']; + + users = { + users."${cfg.user}" = { + description = "Akkoma user"; + group = cfg.group; + isSystemUser = true; + }; + groups."${cfg.group}" = { }; + }; + + # Confinement of the main service unit requires separation of the + # configuration generation into a separate unit to permit access to secrets + # residing outside of the chroot. + systemd.services.akkoma-config = { + description = "Akkoma social network configuration"; + reloadTriggers = [ configFile ] ++ secretPaths; + + unitConfig.PropagatesReloadTo = [ "akkoma.service" ]; + serviceConfig = { + Type = "oneshot"; + RemainAfterExit = true; + UMask = "0077"; + + RuntimeDirectory = "akkoma"; + + ExecStart = mkMerge [ + (mkIf (cfg.dist.cookie == null) [ genScript ]) + (mkIf (cfg.dist.cookie != null) [ copyScript ]) + (mkIf cfg.initSecrets [ initSecretsScript ]) + [ configScript ] + ]; + + ExecReload = mkMerge [ + (mkIf cfg.initSecrets [ initSecretsScript ]) + [ configScript ] + ]; + }; + }; + + systemd.services.akkoma-initdb = mkIf cfg.initDb.enable { + description = "Akkoma social network database setup"; + requires = [ "akkoma-config.service" ]; + requiredBy = [ "akkoma.service" ]; + after = [ "akkoma-config.service" "postgresql.service" ]; + before = [ "akkoma.service" ]; + + serviceConfig = { + Type = "oneshot"; + User = mkIf (db ? socket_dir || db ? socket) + cfg.initDb.username; + RemainAfterExit = true; + UMask = "0077"; + ExecStart = initDbScript; + PrivateTmp = true; + }; + }; + + systemd.services.akkoma = let + runtimeInputs = with pkgs; [ coreutils gawk gnused ] ++ cfg.extraPackages; + in { + description = "Akkoma social network"; + documentation = [ "https://docs.akkoma.dev/stable/" ]; + + # This service depends on network-online.target and is sequenced after + # it because it requires access to the Internet to function properly. + bindsTo = [ "akkoma-config.service" ]; + wants = [ "network-online.service" ]; + wantedBy = [ "multi-user.target" ]; + after = [ + "akkoma-config.target" + "network.target" + "network-online.target" + "postgresql.service" + ]; + + confinement.packages = mkIf isConfined runtimeInputs; + path = runtimeInputs; + + serviceConfig = { + Type = "exec"; + User = cfg.user; + Group = cfg.group; + UMask = "0077"; + + # The run‐time directory is preserved as it is managed by the akkoma-config.service unit. + RuntimeDirectory = "akkoma"; + RuntimeDirectoryPreserve = true; + + CacheDirectory = "akkoma"; + + BindPaths = [ "${uploadDir}:${uploadDir}:norbind" ]; + BindReadOnlyPaths = mkMerge [ + (mkIf (!isStorePath staticDir) [ "${staticDir}:${staticDir}:norbind" ]) + (mkIf isConfined (mkMerge [ + [ "/etc/hosts" "/etc/resolv.conf" ] + (mkIf (isStorePath staticDir) (map (dir: "${dir}:${dir}:norbind") + (splitString "\n" (readFile ((pkgs.closureInfo { rootPaths = staticDir; }) + "/store-paths"))))) + (mkIf (db ? socket_dir) [ "${db.socket_dir}:${db.socket_dir}:norbind" ]) + (mkIf (db ? socket) [ "${db.socket}:${db.socket}:norbind" ]) + ])) + ]; + + ExecStartPre = "${envWrapper}/bin/pleroma_ctl migrate"; + ExecStart = "${envWrapper}/bin/pleroma start"; + ExecStartPost = socketScript; + ExecStop = "${envWrapper}/bin/pleroma stop"; + ExecStopPost = mkIf (isAbsolutePath web.http.ip) + "${pkgs.coreutils}/bin/rm -f '${web.http.ip}'"; + + ProtectProc = "noaccess"; + ProcSubset = "pid"; + ProtectSystem = mkIf (!isConfined) "strict"; + ProtectHome = true; + PrivateTmp = true; + PrivateDevices = true; + PrivateIPC = true; + ProtectHostname = true; + ProtectClock = true; + ProtectKernelTunables = true; + ProtectKernelModules = true; + ProtectKernelLogs = true; + ProtectControlGroups = true; + + RestrictAddressFamilies = [ "AF_UNIX" "AF_INET" "AF_INET6" ]; + RestrictNamespaces = true; + LockPersonality = true; + RestrictRealtime = true; + RestrictSUIDSGID = true; + RemoveIPC = true; + + CapabilityBoundingSet = mkIf + (any (port: port > 0 && port < 1024) + [ web.http.port cfg.dist.epmdPort cfg.dist.portMin ]) + [ "CAP_NET_BIND_SERVICE" ]; + + NoNewPrivileges = true; + SystemCallFilter = [ "@system-service" "~@privileged" "@chown" ]; + SystemCallArchitectures = "native"; + + DeviceAllow = null; + DevicePolicy = "closed"; + + # SMTP adapter uses dynamic port 0 binding, which is incompatible with bind address filtering + SocketBindAllow = mkIf (!hasSmtp) (mkMerge [ + [ "tcp:${toString cfg.dist.epmdPort}" "tcp:${toString cfg.dist.portMin}-${toString cfg.dist.portMax}" ] + (mkIf (web.http.port != 0) [ "tcp:${toString web.http.port}" ]) + ]); + SocketBindDeny = mkIf (!hasSmtp) "any"; + }; + }; + + systemd.tmpfiles.rules = [ + "d ${uploadDir} 0700 ${cfg.user} ${cfg.group} - -" + "Z ${uploadDir} ~0700 ${cfg.user} ${cfg.group} - -" + ]; + + environment.systemPackages = mkIf (cfg.installWrapper) [ userWrapper ]; + + services.nginx.virtualHosts = mkIf (cfg.nginx != null) { + ${web.url.host} = mkMerge [ cfg.nginx { + locations."/" = { + proxyPass = + if isAbsolutePath web.http.ip + then "http://unix:${web.http.ip}" + else if hasInfix ":" web.http.ip + then "http://[${web.http.ip}]:${toString web.http.port}" + else "http://${web.http.ip}:${toString web.http.port}"; + + proxyWebsockets = true; + recommendedProxySettings = true; + }; + }]; + }; + }; + + meta.maintainers = with maintainers; [ mvs ]; + meta.doc = ./akkoma.xml; +} diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/akkoma.xml b/third_party/nixpkgs/nixos/modules/services/web-apps/akkoma.xml new file mode 100644 index 0000000000..76e6b806f3 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/akkoma.xml @@ -0,0 +1,396 @@ + + Akkoma + + Akkoma is a + lightweight ActivityPub microblogging server forked from Pleroma. + +
+ Service configuration + + The Elixir configuration file required by Akkoma is generated + automatically from + . + Secrets must be included from external files outside of the Nix + store by setting the configuration option to an attribute set + containing the attribute – a string + pointing to the file containing the actual value of the option. + + + For the mandatory configuration settings these secrets will be + generated automatically if the referenced file does not exist + during startup, unless disabled through + . + + + The following configuration binds Akkoma to the Unix socket + /run/akkoma/socket, expecting to be run behind + a HTTP proxy on fediverse.example.com. + + +services.akkoma.enable = true; +services.akkoma.config = { + ":pleroma" = { + ":instance" = { + name = "My Akkoma instance"; + description = "More detailed description"; + email = "admin@example.com"; + registration_open = false; + }; + + "Pleroma.Web.Endpoint" = { + url.host = "fediverse.example.com"; + }; + }; +}; + + + Please refer to the + configuration + cheat sheet for additional configuration options. + +
+
+ User management + + After the Akkoma service is running, the administration utility + can be used to + manage + users. In particular an administrative user can be created + with + + +$ pleroma_ctl user new <nickname> <email> --admin --moderator --password <password> + +
+
+ Proxy configuration + + Although it is possible to expose Akkoma directly, it is common + practice to operate it behind an HTTP reverse proxy such as nginx. + + +services.akkoma.nginx = { + enableACME = true; + forceSSL = true; +}; + +services.nginx = { + enable = true; + + clientMaxBodySize = "16m"; + recommendedTlsSettings = true; + recommendedOptimisation = true; + recommendedGzipSettings = true; +}; + + + Please refer to for + details on how to provision an SSL/TLS certificate. + +
+ Media proxy + + Without the media proxy function, Akkoma does not store any + remote media like pictures or video locally, and clients have to + fetch them directly from the source server. + + +# Enable nginx slice module distributed with Tengine +services.nginx.package = pkgs.tengine; + +# Enable media proxy +services.akkoma.config.":pleroma".":media_proxy" = { + enabled = true; + proxy_opts.redirect_on_failure = true; +}; + +# Adjust the persistent cache size as needed: +# Assuming an average object size of 128 KiB, around 1 MiB +# of memory is required for the key zone per GiB of cache. +# Ensure that the cache directory exists and is writable by nginx. +services.nginx.commonHttpConfig = '' + proxy_cache_path /var/cache/nginx/cache/akkoma-media-cache + levels= keys_zone=akkoma_media_cache:16m max_size=16g + inactive=1y use_temp_path=off; +''; + +services.akkoma.nginx = { + locations."/proxy" = { + proxyPass = "http://unix:/run/akkoma/socket"; + + extraConfig = '' + proxy_cache akkoma_media_cache; + + # Cache objects in slices of 1 MiB + slice 1m; + proxy_cache_key $host$uri$is_args$args$slice_range; + proxy_set_header Range $slice_range; + + # Decouple proxy and upstream responses + proxy_buffering on; + proxy_cache_lock on; + proxy_ignore_client_abort on; + + # Default cache times for various responses + proxy_cache_valid 200 1y; + proxy_cache_valid 206 301 304 1h; + + # Allow serving of stale items + proxy_cache_use_stale error timeout invalid_header updating; + ''; + }; +}; + +
+ Prefetch remote media + + The following example enables the + MediaProxyWarmingPolicy MRF policy which + automatically fetches all media associated with a post through + the media proxy, as soon as the post is received by the + instance. + + +services.akkoma.config.":pleroma".":mrf".policies = + map (pkgs.formats.elixirConf { }).lib.mkRaw [ + "Pleroma.Web.ActivityPub.MRF.MediaProxyWarmingPolicy" +]; + +
+
+ Media previews + + Akkoma can generate previews for media. + + +services.akkoma.config.":pleroma".":media_preview_proxy" = { + enabled = true; + thumbnail_max_width = 1920; + thumbnail_max_height = 1080; +}; + +
+
+
+
+ Frontend management + + Akkoma will be deployed with the pleroma-fe and + admin-fe frontends by default. These can be + modified by setting + . + + + The following example overrides the primary frontend’s default + configuration using a custom derivation. + + +services.akkoma.frontends.primary.package = pkgs.runCommand "pleroma-fe" { + config = builtins.toJSON { + expertLevel = 1; + collapseMessageWithSubject = false; + stopGifs = false; + replyVisibility = "following"; + webPushHideIfCW = true; + hideScopeNotice = true; + renderMisskeyMarkdown = false; + hideSiteFavicon = true; + postContentType = "text/markdown"; + showNavShortcuts = false; + }; + nativeBuildInputs = with pkgs; [ jq xorg.lndir ]; + passAsFile = [ "config" ]; +} '' + mkdir $out + lndir ${pkgs.akkoma-frontends.pleroma-fe} $out + + rm $out/static/config.json + jq -s add ${pkgs.akkoma-frontends.pleroma-fe}/static/config.json ${config} \ + >$out/static/config.json +''; + +
+
+ Federation policies + + Akkoma comes with a number of modules to police federation with + other ActivityPub instances. The most valuable for typical users + is the + :mrf_simple + module which allows limiting federation based on instance + hostnames. + + + This configuration snippet provides an example on how these can be + used. Choosing an adequate federation policy is not trivial and + entails finding a balance between connectivity to the rest of the + fediverse and providing a pleasant experience to the users of an + instance. + + +services.akkoma.config.":pleroma" = with (pkgs.formats.elixirConf { }).lib; { + ":mrf".policies = map mkRaw [ + "Pleroma.Web.ActivityPub.MRF.SimplePolicy" + ]; + + ":mrf_simple" = { + # Tag all media as sensitive + media_nsfw = mkMap { + "nsfw.weird.kinky" = "Untagged NSFW content"; + }; + + # Reject all activities except deletes + reject = mkMap { + "kiwifarms.cc" = "Persistent harassment of users, no moderation"; + }; + + # Force posts to be visible by followers only + followers_only = mkMap { + "beta.birdsite.live" = "Avoid polluting timelines with Twitter posts"; + }; + }; +}; + +
+
+ Upload filters + + This example strips GPS and location metadata from uploads, + deduplicates them and anonymises the the file name. + + +services.akkoma.config.":pleroma"."Pleroma.Upload".filters = + map (pkgs.formats.elixirConf { }).lib.mkRaw [ + "Pleroma.Upload.Filter.Exiftool" + "Pleroma.Upload.Filter.Dedupe" + "Pleroma.Upload.Filter.AnonymizeFilename" + ]; + +
+
+ Migration from Pleroma + + Pleroma instances can be migrated to Akkoma either by copying the + database and upload data or by pointing Akkoma to the existing + data. The necessary database migrations are run automatically + during startup of the service. + + + The configuration has to be copy‐edited manually. + + + Depending on the size of the database, the initial migration may + take a long time and exceed the startup timeout of the system + manager. To work around this issue one may adjust the startup + timeout + + or simply run the migrations manually: + + +pleroma_ctl migrate + +
+ Copying data + + Copying the Pleroma data instead of re‐using it in place may + permit easier reversion to Pleroma, but allows the two data sets + to diverge. + + + First disable Pleroma and then copy its database and upload + data: + + +# Create a copy of the database +nix-shell -p postgresql --run 'createdb -T pleroma akkoma' + +# Copy upload data +mkdir /var/lib/akkoma +cp -R --reflink=auto /var/lib/pleroma/uploads /var/lib/akkoma/ + + + After the data has been copied, enable the Akkoma service and + verify that the migration has been successful. If no longer + required, the original data may then be deleted: + + +# Delete original database +nix-shell -p postgresql --run 'dropdb pleroma' + +# Delete original Pleroma state +rm -r /var/lib/pleroma + +
+
+ Re‐using data + + To re‐use the Pleroma data in place, disable Pleroma and enable + Akkoma, pointing it to the Pleroma database and upload + directory. + + +# Adjust these settings according to the database name and upload directory path used by Pleroma +services.akkoma.config.":pleroma"."Pleroma.Repo".database = "pleroma"; +services.akkoma.config.":pleroma".":instance".upload_dir = "/var/lib/pleroma/uploads"; + + + Please keep in mind that after the Akkoma service has been + started, any migrations applied by Akkoma have to be rolled back + before the database can be used again with Pleroma. This can be + achieved through pleroma_ctl ecto.rollback. + Refer to the + Ecto + SQL documentation for details. + +
+
+
+ Advanced deployment options +
+ Confinement + + The Akkoma systemd service may be confined to a chroot with + + +services.systemd.akkoma.confinement.enable = true; + + + Confinement of services is not generally supported in NixOS and + therefore disabled by default. Depending on the Akkoma + configuration, the default confinement settings may be + insufficient and lead to subtle errors at run time, requiring + adjustment: + + + Use + + to make packages available in the chroot. + + + + and + + permit access to outside paths through bind mounts. Refer to + systemd.exec5 + for details. + +
+
+ Distributed deployment + + Being an Elixir application, Akkoma can be deployed in a + distributed fashion. + + + This requires setting + + and + . + The specifics depend strongly on the deployment environment. For + more information please check the relevant + Erlang + documentation. + +
+
+ diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/bookstack.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/bookstack.nix index 40bb377e2c..d846c98577 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/bookstack.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/bookstack.nix @@ -359,7 +359,7 @@ in { }; systemd.services.bookstack-setup = { - description = "Preperation tasks for BookStack"; + description = "Preparation tasks for BookStack"; before = [ "phpfpm-bookstack.service" ]; after = optional db.createLocally "mysql.service"; wantedBy = [ "multi-user.target" ]; diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/dex.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/dex.nix index 1dcc6f7a7c..f69f1749ae 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/dex.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/dex.nix @@ -83,11 +83,12 @@ in AmbientCapabilities = "CAP_NET_BIND_SERVICE"; BindReadOnlyPaths = [ "/nix/store" - "-/etc/resolv.conf" - "-/etc/nsswitch.conf" + "-/etc/dex" "-/etc/hosts" "-/etc/localtime" - "-/etc/dex" + "-/etc/nsswitch.conf" + "-/etc/resolv.conf" + "-/etc/ssl/certs/ca-certificates.crt" ]; BindPaths = optional (cfg.settings.storage.type == "postgres") "/var/run/postgresql"; CapabilityBoundingSet = "CAP_NET_BIND_SERVICE"; diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/dolibarr.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/dolibarr.nix index 5335c43932..f262099354 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/dolibarr.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/dolibarr.nix @@ -1,11 +1,11 @@ { config, pkgs, lib, ... }: let - inherit (lib) any boolToString concatStringsSep isBool isString literalExpression mapAttrsToList mkDefault mkEnableOption mkIf mkOption optionalAttrs types; + inherit (lib) any boolToString concatStringsSep isBool isString mapAttrsToList mkDefault mkEnableOption mkIf mkMerge mkOption optionalAttrs types; package = pkgs.dolibarr.override { inherit (cfg) stateDir; }; cfg = config.services.dolibarr; - vhostCfg = config.services.nginx.virtualHosts."${cfg.domain}"; + vhostCfg = lib.optionalAttr (cfg.nginx != null) config.services.nginx.virtualHosts."${cfg.domain}"; mkConfigFile = filename: settings: let @@ -38,7 +38,7 @@ let force_install_database = cfg.database.name; force_install_databaselogin = cfg.database.user; - force_install_mainforcehttps = vhostCfg.forceSSL; + force_install_mainforcehttps = vhostCfg.forceSSL or false; force_install_createuser = false; force_install_dolibarrlogin = null; } // optionalAttrs (cfg.database.passwordFile != null) { @@ -183,7 +183,8 @@ in }; # implementation - config = mkIf cfg.enable { + config = mkIf cfg.enable (mkMerge [ + { assertions = [ { assertion = cfg.database.createLocally -> cfg.database.user == cfg.user; @@ -214,7 +215,7 @@ in # Security settings dolibarr_main_prod = true; - dolibarr_main_force_https = vhostCfg.forceSSL; + dolibarr_main_force_https = vhostCfg.forceSSL or false; dolibarr_main_restrict_os_commands = "${pkgs.mariadb}/bin/mysqldump, ${pkgs.mariadb}/bin/mysql"; dolibarr_nocsrfcheck = false; dolibarr_main_instance_unique_id = '' @@ -314,7 +315,9 @@ in users.groups = optionalAttrs (cfg.group == "dolibarr") { dolibarr = { }; }; - - users.users."${config.services.nginx.group}".extraGroups = [ cfg.group ]; - }; + } + (mkIf (cfg.nginx != null) { + users.users."${config.services.nginx.group}".extraGroups = mkIf (cfg.nginx != null) [ cfg.group ]; + }) +]); } diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/healthchecks.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/healthchecks.nix index 7da6dce1f9..b3fdb681e2 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/healthchecks.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/healthchecks.nix @@ -98,7 +98,7 @@ in description = lib.mdDoc '' Environment variables which are read by healthchecks `(local)_settings.py`. - Settings which are explictly covered in options bewlow, are type-checked and/or transformed + Settings which are explicitly covered in options bewlow, are type-checked and/or transformed before added to the environment, everything else is passed as a string. See diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/hedgedoc.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/hedgedoc.nix index a623e45691..90ca3002c5 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/hedgedoc.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/hedgedoc.nix @@ -291,7 +291,8 @@ in }; defaultNotePath = mkOption { type = types.nullOr types.str; - default = "./public/default.md"; + default = "${cfg.package}/public/default.md"; + defaultText = literalExpression "\"\${cfg.package}/public/default.md\""; description = lib.mdDoc '' Path to the default Note file. (Non-canonical paths are relative to HedgeDoc's base directory) @@ -299,7 +300,8 @@ in }; docsPath = mkOption { type = types.nullOr types.str; - default = "./public/docs"; + default = "${cfg.package}/public/docs"; + defaultText = literalExpression "\"\${cfg.package}/public/docs\""; description = lib.mdDoc '' Path to the docs directory. (Non-canonical paths are relative to HedgeDoc's base directory) @@ -307,7 +309,8 @@ in }; indexPath = mkOption { type = types.nullOr types.str; - default = "./public/views/index.ejs"; + default = "${cfg.package}/public/views/index.ejs"; + defaultText = literalExpression "\"\${cfg.package}/public/views/index.ejs\""; description = lib.mdDoc '' Path to the index template file. (Non-canonical paths are relative to HedgeDoc's base directory) @@ -315,7 +318,8 @@ in }; hackmdPath = mkOption { type = types.nullOr types.str; - default = "./public/views/hackmd.ejs"; + default = "${cfg.package}/public/views/hackmd.ejs"; + defaultText = literalExpression "\"\${cfg.package}/public/views/hackmd.ejs\""; description = lib.mdDoc '' Path to the hackmd template file. (Non-canonical paths are relative to HedgeDoc's base directory) @@ -323,8 +327,8 @@ in }; errorPath = mkOption { type = types.nullOr types.str; - default = null; - defaultText = literalExpression "./public/views/error.ejs"; + default = "${cfg.package}/public/views/error.ejs"; + defaultText = literalExpression "\"\${cfg.package}/public/views/error.ejs\""; description = lib.mdDoc '' Path to the error template file. (Non-canonical paths are relative to HedgeDoc's base directory) @@ -332,8 +336,8 @@ in }; prettyPath = mkOption { type = types.nullOr types.str; - default = null; - defaultText = literalExpression "./public/views/pretty.ejs"; + default = "${cfg.package}/public/views/pretty.ejs"; + defaultText = literalExpression "\"\${cfg.package}/public/views/pretty.ejs\""; description = lib.mdDoc '' Path to the pretty template file. (Non-canonical paths are relative to HedgeDoc's base directory) @@ -341,8 +345,8 @@ in }; slidePath = mkOption { type = types.nullOr types.str; - default = null; - defaultText = literalExpression "./public/views/slide.hbs"; + default = "${cfg.package}/public/views/slide.hbs"; + defaultText = literalExpression "\"\${cfg.package}/public/views/slide.hbs\""; description = lib.mdDoc '' Path to the slide template file. (Non-canonical paths are relative to HedgeDoc's base directory) @@ -351,7 +355,7 @@ in uploadsPath = mkOption { type = types.str; default = "${cfg.workDir}/uploads"; - defaultText = literalExpression "/var/lib/${name}/uploads"; + defaultText = literalExpression "\"\${cfg.workDir}/uploads\""; description = lib.mdDoc '' Path under which uploaded files are saved. ''; diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/ihatemoney/default.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/ihatemoney/default.nix index b0da0acfcf..a61aa445f8 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/ihatemoney/default.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/ihatemoney/default.nix @@ -68,7 +68,7 @@ in example = { http = ":8000"; }; - description = lib.mdDoc "Additionnal configuration of the UWSGI vassal running ihatemoney. It should notably specify on which interfaces and ports the vassal should listen."; + description = lib.mdDoc "Additional configuration of the UWSGI vassal running ihatemoney. It should notably specify on which interfaces and ports the vassal should listen."; }; defaultSender = { name = mkOption { diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/invidious.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/invidious.nix index a153aa3fb0..61c52ee03d 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/invidious.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/invidious.nix @@ -171,7 +171,7 @@ in description = lib.mdDoc '' A file including Invidious settings. - It gets merged with the setttings specified in {option}`services.invidious.settings` + It gets merged with the settings specified in {option}`services.invidious.settings` and can be used to store secrets like `hmac_key` outside of the nix store. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/invoiceplane.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/invoiceplane.nix index 99e7b1f96e..8be1fd3055 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/invoiceplane.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/invoiceplane.nix @@ -74,7 +74,7 @@ let type = types.path; default = "/var/lib/invoiceplane/${name}"; description = lib.mdDoc '' - This directory is used for uploads of attachements and cache. + This directory is used for uploads of attachments and cache. The directory passed here is automatically created and permissions adjusted as required. ''; diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/jitsi-meet.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/jitsi-meet.nix index a42e249189..5b0934b2fb 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/jitsi-meet.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/jitsi-meet.nix @@ -28,7 +28,7 @@ let ''); # Essential config - it's probably not good to have these as option default because - # types.attrs doesn't do merging. Let's merge explicitly, can still be overriden if + # types.attrs doesn't do merging. Let's merge explicitly, can still be overridden if # user desires. defaultCfg = { hosts = { diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/matomo.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/matomo.nix index 117d540ba3..0435d21ce8 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/matomo.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/matomo.nix @@ -174,7 +174,7 @@ in { CURRENT_PACKAGE=$(readlink ${dataDir}/current-package) NEW_PACKAGE=${cfg.package} if [ "$CURRENT_PACKAGE" != "$NEW_PACKAGE" ]; then - # keeping tmp arround between upgrades seems to bork stuff, so delete it + # keeping tmp around between upgrades seems to bork stuff, so delete it rm -rf ${dataDir}/tmp fi elif [ -e ${dataDir}/tmp ]; then diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/mattermost.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/mattermost.nix index 99042821f5..56a53198b3 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/mattermost.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/mattermost.nix @@ -170,7 +170,7 @@ in type = types.attrs; default = { }; description = lib.mdDoc '' - Addtional configuration options as Nix attribute set in config.json schema. + Additional configuration options as Nix attribute set in config.json schema. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/mediawiki.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/mediawiki.nix index e332847f5a..07f2967486 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/mediawiki.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/mediawiki.nix @@ -129,7 +129,7 @@ let ## Set $wgCacheDirectory to a writable directory on the web server ## to make your wiki go slightly faster. The directory should not - ## be publically accessible from the web. + ## be publicly accessible from the web. $wgCacheDirectory = "${cacheDir}"; # Site language code, should be one of the list in ./languages/data/Names.php diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/netbox.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/netbox.nix index 800af234e2..e028f16004 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/netbox.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/netbox.nix @@ -135,7 +135,7 @@ in { type = types.path; default = ""; description = lib.mdDoc '' - Path to the Configuration-File for LDAP-Authentification, will be loaded as `ldap_config.py`. + Path to the Configuration-File for LDAP-Authentication, will be loaded as `ldap_config.py`. See the [documentation](https://netbox.readthedocs.io/en/stable/installation/6-ldap/#configuration) for possible options. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/nextcloud.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/nextcloud.nix index da621573f2..90801e9968 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/nextcloud.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/nextcloud.nix @@ -16,7 +16,7 @@ let # disable default openssl extension (lib.filter (e: e.pname != "php-openssl") enabled) # use OpenSSL 1.1 for RC4 Nextcloud encryption if user - # has acknowledged the brokeness of the ciphers (RC4). + # has acknowledged the brokenness of the ciphers (RC4). # TODO: remove when https://github.com/nextcloud/server/issues/32003 is fixed. ++ (if cfg.enableBrokenCiphersForSSE then [ cfg.phpPackage.extensions.openssl-legacy ] else [ cfg.phpPackage.extensions.openssl ]) ++ optional cfg.enableImagemagick imagick @@ -76,7 +76,7 @@ in { * setting `listen.owner` & `listen.group` in the phpfpm-pool to a different value Further details about this can be found in the `Nextcloud`-section of the NixOS-manual - (which can be openend e.g. by running `nixos-help`). + (which can be opened e.g. by running `nixos-help`). '') (mkRemovedOptionModule [ "services" "nextcloud" "disableImagemagick" ] '' Use services.nextcloud.nginx.enableImagemagick instead. @@ -388,7 +388,7 @@ in { default = []; description = lib.mdDoc '' Trusted domains, from which the nextcloud installation will be - acessible. You don't need to add + accessible. You don't need to add `services.nextcloud.hostname` here. ''; }; @@ -698,7 +698,7 @@ in { services.nextcloud.enableBrokenCiphersForSSE = false; - If you need to use server-side encryption you can ignore this waring. + If you need to use server-side encryption you can ignore this warning. Otherwise you'd have to disable server-side encryption first in order to be able to safely disable this option and get rid of this warning. See on how to achieve this. @@ -758,7 +758,7 @@ in { nextcloud-setup = let c = cfg.config; - writePhpArrary = a: "[${concatMapStringsSep "," (val: ''"${toString val}"'') a}]"; + writePhpArray = a: "[${concatMapStringsSep "," (val: ''"${toString val}"'') a}]"; requiresReadSecretFunction = c.dbpassFile != null || c.objectstore.s3.enable; objectstoreConfig = let s3 = c.objectstore.s3; in optionalString s3.enable '' 'objectstore' => [ @@ -838,8 +838,8 @@ in { '' } 'dbtype' => '${c.dbtype}', - 'trusted_domains' => ${writePhpArrary ([ cfg.hostName ] ++ c.extraTrustedDomains)}, - 'trusted_proxies' => ${writePhpArrary (c.trustedProxies)}, + 'trusted_domains' => ${writePhpArray ([ cfg.hostName ] ++ c.extraTrustedDomains)}, + 'trusted_proxies' => ${writePhpArray (c.trustedProxies)}, ${optionalString (c.defaultPhoneRegion != null) "'default_phone_region' => '${c.defaultPhoneRegion}',"} ${optionalString (nextcloudGreaterOrEqualThan "23") "'profile.enabled' => ${boolToString cfg.globalProfiles},"} ${objectstoreConfig} diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/nextcloud.xml b/third_party/nixpkgs/nixos/modules/services/web-apps/nextcloud.xml index ca57692fc1..4207c4008d 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/nextcloud.xml +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/nextcloud.xml @@ -283,7 +283,7 @@ If major-releases will be abandoned by upstream, we should check first if those are needed - in NixOS for a safe upgrade-path before removing those. In that case we shold keep those + in NixOS for a safe upgrade-path before removing those. In that case we should keep those packages, but mark them as insecure in an expression like this (in <nixpkgs/pkgs/servers/nextcloud/default.nix>): /* ... */ diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/onlyoffice.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/onlyoffice.nix index 1478e8da87..79ed3e43dd 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/onlyoffice.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/onlyoffice.nix @@ -54,7 +54,7 @@ in postgresName = mkOption { type = types.str; default = "onlyoffice"; - description = lib.mdDoc "The name of databse OnlyOffice should user."; + description = lib.mdDoc "The name of database OnlyOffice should user."; }; postgresPasswordFile = mkOption { diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/outline.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/outline.nix index 701930393f..b72dd8243b 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/outline.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/outline.nix @@ -465,7 +465,7 @@ in options = { host = lib.mkOption { type = lib.types.str; - description = lib.mdDoc "Host name or IP adress of the SMTP server."; + description = lib.mdDoc "Host name or IP address of the SMTP server."; }; port = lib.mkOption { type = lib.types.port; diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/peering-manager.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/peering-manager.nix index 0db2e8e4ae..666b826212 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/peering-manager.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/peering-manager.nix @@ -130,7 +130,7 @@ in { ldapConfigPath = mkOption { type = types.path; description = lib.mdDoc '' - Path to the Configuration-File for LDAP-Authentification, will be loaded as `ldap_config.py`. + Path to the Configuration-File for LDAP-Authentication, will be loaded as `ldap_config.py`. See the [documentation](https://peering-manager.readthedocs.io/en/stable/setup/6-ldap/#configuration) for possible options. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/web-apps/peertube.nix b/third_party/nixpkgs/nixos/modules/services/web-apps/peertube.nix index 4dbcb09d2a..7e418f2869 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-apps/peertube.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-apps/peertube.nix @@ -161,6 +161,18 @@ in { description = lib.mdDoc "Configure nginx as a reverse proxy for peertube."; }; + secrets = { + secretsFile = lib.mkOption { + type = lib.types.nullOr lib.types.path; + default = null; + example = "/run/secrets/peertube"; + description = lib.mdDoc '' + Secrets to run PeerTube. + Generate one using `openssl rand -hex 32` + ''; + }; + }; + database = { createLocally = lib.mkOption { type = lib.types.bool; @@ -201,7 +213,7 @@ in { passwordFile = lib.mkOption { type = lib.types.nullOr lib.types.path; default = null; - example = "/run/keys/peertube/password-posgressql-db"; + example = "/run/keys/peertube/password-postgresql"; description = lib.mdDoc "Password for PostgreSQL database."; }; }; @@ -282,6 +294,11 @@ in { prevent this. ''; } + { assertion = cfg.secrets.secretsFile != null; + message = '' + needs to be set. + ''; + } { assertion = !(cfg.redis.enableUnixSocket && (cfg.redis.host != null || cfg.redis.port != null)); message = '' and redis network connection ( or ) enabled. Disable either of them. @@ -349,6 +366,7 @@ in { captions = lib.mkDefault "/var/lib/peertube/storage/captions/"; cache = lib.mkDefault "/var/lib/peertube/storage/cache/"; plugins = lib.mkDefault "/var/lib/peertube/storage/plugins/"; + well_known = lib.mkDefault "/var/lib/peertube/storage/well_known/"; client_overrides = lib.mkDefault "/var/lib/peertube/storage/client-overrides/"; }; import = { @@ -417,6 +435,10 @@ in { #!/bin/sh umask 077 cat > /var/lib/peertube/config/local.yaml < conf + + LD_PRELOAD=${pkgs.libredirect}/lib/libredirect.so \ + NIX_REDIRECTS="/etc/resolv.conf=/dev/null" \ + nginx -t -c $(readlink -f ./conf) > out 2>&1 || true + if ! grep -q "syntax is ok" out; then + echo nginx config validation failed. + echo config was ${configFile}. + echo 'in case of false positive, set `services.nginx.validateConfig` to false.' + echo nginx output: + cat out + exit 1 + fi + cp ${configFile} $out + ''; + + finalConfigFile = if cfg.validateConfig then validatedConfigFile else configFile; in { @@ -489,6 +523,17 @@ in ''; }; + validateConfig = mkOption { + # FIXME: re-enable if we can make of the configurations work. + #default = pkgs.stdenv.hostPlatform == pkgs.stdenv.buildPlatform; + default = false; + defaultText = literalExpression "pkgs.stdenv.hostPlatform == pkgs.stdenv.buildPlatform"; + type = types.bool; + description = lib.mdDoc '' + Validate the generated nginx config at build time. The check is not very robust and can be disabled in case of false positives. This is notably the case when cross-compiling or when using `include` with files outside of the store. + ''; + }; + additionalModules = mkOption { default = []; type = types.listOf (types.attrsOf types.anything); @@ -1027,7 +1072,7 @@ in }; environment.etc."nginx/nginx.conf" = mkIf cfg.enableReload { - source = configFile; + source = finalConfigFile; }; # This service waits for all certificates to be available @@ -1046,7 +1091,7 @@ in # certs are updated _after_ config has been reloaded. before = sslTargets; after = sslServices; - restartTriggers = optionals (cfg.enableReload) [ configFile ]; + restartTriggers = optionals (cfg.enableReload) [ finalConfigFile ]; # Block reloading if not all certs exist yet. # Happens when config changes add new vhosts/certs. unitConfig.ConditionPathExists = optionals (sslServices != []) (map (certName: certs.${certName}.directory + "/fullchain.pem") dependentCertNames); diff --git a/third_party/nixpkgs/nixos/modules/services/web-servers/nginx/vhost-options.nix b/third_party/nixpkgs/nixos/modules/services/web-servers/nginx/vhost-options.nix index 2bdc046c0d..089decb5f4 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-servers/nginx/vhost-options.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-servers/nginx/vhost-options.nix @@ -54,8 +54,8 @@ with lib; description = lib.mdDoc '' Listen addresses for this virtual host. - Compared to `listen` this only sets the addreses - and the ports are choosen automatically. + Compared to `listen` this only sets the addresses + and the ports are chosen automatically. Note: This option overrides `enableIPv6` ''; diff --git a/third_party/nixpkgs/nixos/modules/services/web-servers/ttyd.nix b/third_party/nixpkgs/nixos/modules/services/web-servers/ttyd.nix index affd5bbeea..e0a8b5179e 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-servers/ttyd.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-servers/ttyd.nix @@ -163,7 +163,7 @@ in assertions = [ { assertion = cfg.enableSSL -> cfg.certFile != null && cfg.keyFile != null && cfg.caFile != null; - message = "SSL is enabled for ttyd, but no certFile, keyFile or caFile has been specefied."; } + message = "SSL is enabled for ttyd, but no certFile, keyFile or caFile has been specified."; } { assertion = ! (cfg.interface != null && cfg.socket != null); message = "Cannot set both interface and socket for ttyd."; } { assertion = (cfg.username != null) == (cfg.passwordFile != null); diff --git a/third_party/nixpkgs/nixos/modules/services/web-servers/zope2.nix b/third_party/nixpkgs/nixos/modules/services/web-servers/zope2.nix index a80fe882f1..a17fe6bc20 100644 --- a/third_party/nixpkgs/nixos/modules/services/web-servers/zope2.nix +++ b/third_party/nixpkgs/nixos/modules/services/web-servers/zope2.nix @@ -95,7 +95,7 @@ in }; } ''; - description = lib.mdDoc "zope2 instances to be created automaticaly by the system."; + description = lib.mdDoc "zope2 instances to be created automatically by the system."; }; }; diff --git a/third_party/nixpkgs/nixos/modules/services/x11/desktop-managers/cinnamon.nix b/third_party/nixpkgs/nixos/modules/services/x11/desktop-managers/cinnamon.nix index aaad1de5f8..08c5625fc7 100644 --- a/third_party/nixpkgs/nixos/modules/services/x11/desktop-managers/cinnamon.nix +++ b/third_party/nixpkgs/nixos/modules/services/x11/desktop-managers/cinnamon.nix @@ -105,7 +105,7 @@ in services.dbus.packages = with pkgs.cinnamon; [ cinnamon-common cinnamon-screensaver - nemo + nemo-with-extensions xapp ]; services.cinnamon.apps.enable = mkDefault true; @@ -154,7 +154,7 @@ in polkit_gnome # packages - nemo + nemo-with-extensions cinnamon-control-center cinnamon-settings-daemon libgnomekbd diff --git a/third_party/nixpkgs/nixos/modules/services/x11/desktop-managers/plasma5.nix b/third_party/nixpkgs/nixos/modules/services/x11/desktop-managers/plasma5.nix index 2ab24951ec..9fcb408c28 100644 --- a/third_party/nixpkgs/nixos/modules/services/x11/desktop-managers/plasma5.nix +++ b/third_party/nixpkgs/nixos/modules/services/x11/desktop-managers/plasma5.nix @@ -585,6 +585,8 @@ in hardware.bluetooth.enable = true; hardware.pulseaudio.enable = true; networking.networkmanager.enable = true; + # Required for autorotate + hardware.sensor.iio.enable = lib.mkDefault true; # Recommendations can be found here: # - https://invent.kde.org/plasma-mobile/plasma-phone-settings/-/tree/master/etc/xdg diff --git a/third_party/nixpkgs/nixos/modules/services/x11/display-managers/sddm.nix b/third_party/nixpkgs/nixos/modules/services/x11/display-managers/sddm.nix index e86a18ff61..a3f03d7a19 100644 --- a/third_party/nixpkgs/nixos/modules/services/x11/display-managers/sddm.nix +++ b/third_party/nixpkgs/nixos/modules/services/x11/display-managers/sddm.nix @@ -123,7 +123,7 @@ in }; }; description = lib.mdDoc '' - Extra settings merged in and overwritting defaults in sddm.conf. + Extra settings merged in and overwriting defaults in sddm.conf. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/x11/hardware/libinput.nix b/third_party/nixpkgs/nixos/modules/services/x11/hardware/libinput.nix index 0d30b9b5e6..f77036360e 100644 --- a/third_party/nixpkgs/nixos/modules/services/x11/hardware/libinput.nix +++ b/third_party/nixpkgs/nixos/modules/services/x11/hardware/libinput.nix @@ -171,7 +171,7 @@ let cfg = config.services.xserver.libinput; lib.mdDoc '' Enables or disables drag lock during tapping behavior. When enabled, a finger up during tap- and-drag will not immediately release the button. If the finger is set down again within the - timeout, the draging process continues. + timeout, the dragging process continues. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/services/x11/imwheel.nix b/third_party/nixpkgs/nixos/modules/services/x11/imwheel.nix index 03cbdbfb09..133e64c65c 100644 --- a/third_party/nixpkgs/nixos/modules/services/x11/imwheel.nix +++ b/third_party/nixpkgs/nixos/modules/services/x11/imwheel.nix @@ -37,8 +37,8 @@ in Window class translation rules. /etc/X11/imwheelrc is generated based on this config which means this config is global for all users. - See [offical man pages](http://imwheel.sourceforge.net/imwheel.1.html) - for more informations. + See [official man pages](http://imwheel.sourceforge.net/imwheel.1.html) + for more information. ''; }; }; diff --git a/third_party/nixpkgs/nixos/modules/services/x11/xautolock.nix b/third_party/nixpkgs/nixos/modules/services/x11/xautolock.nix index 8200057660..5b8b748a08 100644 --- a/third_party/nixpkgs/nixos/modules/services/x11/xautolock.nix +++ b/third_party/nixpkgs/nixos/modules/services/x11/xautolock.nix @@ -71,7 +71,7 @@ in type = types.nullOr types.str; description = lib.mdDoc '' - The script to use when nothing has happend for as long as {option}`killtime` + The script to use when nothing has happened for as long as {option}`killtime` ''; }; diff --git a/third_party/nixpkgs/nixos/modules/system/activation/bootspec.cue b/third_party/nixpkgs/nixos/modules/system/activation/bootspec.cue index 3fc9ca381d..9f857a1b1c 100644 --- a/third_party/nixpkgs/nixos/modules/system/activation/bootspec.cue +++ b/third_party/nixpkgs/nixos/modules/system/activation/bootspec.cue @@ -1,4 +1,5 @@ #V1: { + system: string init: string initrd?: string initrdSecrets?: string diff --git a/third_party/nixpkgs/nixos/modules/system/activation/bootspec.nix b/third_party/nixpkgs/nixos/modules/system/activation/bootspec.nix index da76bf9084..61407ab675 100644 --- a/third_party/nixpkgs/nixos/modules/system/activation/bootspec.nix +++ b/third_party/nixpkgs/nixos/modules/system/activation/bootspec.nix @@ -19,13 +19,15 @@ let (builtins.toJSON { v1 = { + system = config.boot.kernelPackages.stdenv.hostPlatform.system; kernel = "${config.boot.kernelPackages.kernel}/${config.system.boot.loader.kernelFile}"; kernelParams = config.boot.kernelParams; - initrd = "${config.system.build.initialRamdisk}/${config.system.boot.loader.initrdFile}"; - initrdSecrets = "${config.system.build.initialRamdiskSecretAppender}/bin/append-initrd-secrets"; label = "NixOS ${config.system.nixos.codeName} ${config.system.nixos.label} (Linux ${config.boot.kernelPackages.kernel.modDirVersion})"; inherit (cfg) extensions; + } // lib.optionalAttrs config.boot.initrd.enable { + initrd = "${config.system.build.initialRamdisk}/${config.system.boot.loader.initrdFile}"; + initrdSecrets = "${config.system.build.initialRamdiskSecretAppender}/bin/append-initrd-secrets"; }; }); @@ -54,7 +56,7 @@ let specialisationInjector = let specialisationLoader = (lib.mapAttrsToList - (childName: childToplevel: lib.escapeShellArgs [ "--slurpfile" childName "${childToplevel}/bootspec/${filename}" ]) + (childName: childToplevel: lib.escapeShellArgs [ "--slurpfile" childName "${childToplevel}/${filename}" ]) children); in lib.escapeShellArgs [ @@ -66,7 +68,7 @@ let '' mkdir -p $out/bootspec - ${toplevelInjector} | ${specialisationInjector} > $out/bootspec/${filename} + ${toplevelInjector} | ${specialisationInjector} > $out/${filename} ''; validator = pkgs.writeCueValidator ./bootspec.cue { @@ -80,7 +82,7 @@ in enable = lib.mkEnableOption (lib.mdDoc "Enable generation of RFC-0125 bootspec in $system/bootspec, e.g. /run/current-system/bootspec"); extensions = lib.mkOption { - type = lib.types.attrs; + type = lib.types.attrsOf lib.types.attrs; # : { ...namespace-specific fields } default = { }; description = lib.mdDoc '' User-defined data that extends the bootspec document. diff --git a/third_party/nixpkgs/nixos/modules/system/activation/top-level.nix b/third_party/nixpkgs/nixos/modules/system/activation/top-level.nix index 0bb3628cee..00b11471e1 100644 --- a/third_party/nixpkgs/nixos/modules/system/activation/top-level.nix +++ b/third_party/nixpkgs/nixos/modules/system/activation/top-level.nix @@ -81,7 +81,7 @@ let ${optionalString (!config.boot.isContainer && config.boot.bootspec.enable) '' ${config.boot.bootspec.writer} - ${config.boot.bootspec.validator} "$out/bootspec/${config.boot.bootspec.filename}" + ${config.boot.bootspec.validator} "$out/${config.boot.bootspec.filename}" ''} ${config.system.extraSystemBuilderCmds} diff --git a/third_party/nixpkgs/nixos/modules/system/boot/binfmt.nix b/third_party/nixpkgs/nixos/modules/system/boot/binfmt.nix index 87e66f73be..7f817e5d35 100644 --- a/third_party/nixpkgs/nixos/modules/system/boot/binfmt.nix +++ b/third_party/nixpkgs/nixos/modules/system/boot/binfmt.nix @@ -1,6 +1,6 @@ { config, lib, pkgs, ... }: let - inherit (lib) mkOption types optionalString stringAfter; + inherit (lib) mkOption mkDefault types optionalString stringAfter; cfg = config.boot.binfmt; @@ -281,7 +281,7 @@ in { config = { boot.binfmt.registrations = builtins.listToAttrs (map (system: { name = system; - value = let + value = { config, ... }: let interpreter = getEmulator system; qemuArch = getQemuArch system; @@ -292,13 +292,13 @@ in { in if preserveArgvZero then "${wrapper}/bin/${wrapperName}" else interpreter; - in { - inherit preserveArgvZero; + in ({ + preserveArgvZero = mkDefault preserveArgvZero; - interpreter = interpreterReg; - wrapInterpreterInShell = !preserveArgvZero; - interpreterSandboxPath = dirOf (dirOf interpreterReg); - } // (magics.${system} or (throw "Cannot create binfmt registration for system ${system}")); + interpreter = mkDefault interpreterReg; + wrapInterpreterInShell = mkDefault (!config.preserveArgvZero); + interpreterSandboxPath = mkDefault (dirOf (dirOf config.interpreter)); + } // (magics.${system} or (throw "Cannot create binfmt registration for system ${system}"))); }) cfg.emulatedSystems); nix.settings = lib.mkIf (cfg.emulatedSystems != []) { extra-platforms = cfg.emulatedSystems ++ lib.optional pkgs.stdenv.hostPlatform.isx86_64 "i686-linux"; diff --git a/third_party/nixpkgs/nixos/modules/system/boot/initrd-openvpn.nix b/third_party/nixpkgs/nixos/modules/system/boot/initrd-openvpn.nix index b41e752432..cbc61d55d6 100644 --- a/third_party/nixpkgs/nixos/modules/system/boot/initrd-openvpn.nix +++ b/third_party/nixpkgs/nixos/modules/system/boot/initrd-openvpn.nix @@ -68,11 +68,8 @@ in $out/bin/openvpn --show-gateway ''; - # Add `iproute /bin/ip` to the config, to ensure that openvpn - # is able to set the routes boot.initrd.network.postCommands = '' - (cat /etc/initrd.ovpn; echo -e '\niproute /bin/ip') | \ - openvpn /dev/stdin & + openvpn /etc/initrd.ovpn & ''; }; diff --git a/third_party/nixpkgs/nixos/modules/system/boot/stage-1.nix b/third_party/nixpkgs/nixos/modules/system/boot/stage-1.nix index 28c76fb169..95dcdfd7fb 100644 --- a/third_party/nixpkgs/nixos/modules/system/boot/stage-1.nix +++ b/third_party/nixpkgs/nixos/modules/system/boot/stage-1.nix @@ -205,8 +205,9 @@ let # Copy ld manually since it isn't detected correctly cp -pv ${pkgs.stdenv.cc.libc.out}/lib/ld*.so.? $out/lib - # Copy all of the needed libraries - find $out/bin $out/lib -type f | while read BIN; do + # Copy all of the needed libraries in a consistent order so + # duplicates are resolved the same way. + find $out/bin $out/lib -type f | sort | while read BIN; do echo "Copying libs for executable $BIN" for LIB in $(${findLibs}/bin/find-libs $BIN); do TGT="$out/lib/$(basename $LIB)" diff --git a/third_party/nixpkgs/nixos/modules/system/boot/systemd/initrd.nix b/third_party/nixpkgs/nixos/modules/system/boot/systemd/initrd.nix index 31702499b0..196f44ccd7 100644 --- a/third_party/nixpkgs/nixos/modules/system/boot/systemd/initrd.nix +++ b/third_party/nixpkgs/nixos/modules/system/boot/systemd/initrd.nix @@ -148,6 +148,16 @@ in { visible = false; }; + extraConfig = mkOption { + default = ""; + type = types.lines; + example = "DefaultLimitCORE=infinity"; + description = lib.mdDoc '' + Extra config options for systemd. See systemd-system.conf(5) man page + for available options. + ''; + }; + contents = mkOption { description = lib.mdDoc "Set of files that have to be linked into the initrd"; example = literalExpression '' @@ -352,6 +362,7 @@ in { "/etc/systemd/system.conf".text = '' [Manager] DefaultEnvironment=PATH=/bin:/sbin ${optionalString (isBool cfg.emergencyAccess && cfg.emergencyAccess) "SYSTEMD_SULOGIN_FORCE=1"} + ${cfg.extraConfig} ''; "/lib/modules".source = "${modulesClosure}/lib/modules"; diff --git a/third_party/nixpkgs/nixos/modules/tasks/filesystems.nix b/third_party/nixpkgs/nixos/modules/tasks/filesystems.nix index a093baea6a..7f2c8a41b2 100644 --- a/third_party/nixpkgs/nixos/modules/tasks/filesystems.nix +++ b/third_party/nixpkgs/nixos/modules/tasks/filesystems.nix @@ -54,7 +54,7 @@ let default = [ "defaults" ]; example = [ "data=journal" ]; description = lib.mdDoc "Options used to mount the file system."; - type = types.listOf nonEmptyStr; + type = types.nonEmptyListOf nonEmptyStr; }; depends = mkOption { diff --git a/third_party/nixpkgs/nixos/modules/tasks/filesystems/envfs.nix b/third_party/nixpkgs/nixos/modules/tasks/filesystems/envfs.nix new file mode 100644 index 0000000000..ef8f655c53 --- /dev/null +++ b/third_party/nixpkgs/nixos/modules/tasks/filesystems/envfs.nix @@ -0,0 +1,51 @@ +{ pkgs, config, lib, ... }: + +let + cfg = config.services.envfs; + mounts = { + "/usr/bin" = { + device = "none"; + fsType = "envfs"; + options = [ + "fallback-path=${pkgs.runCommand "fallback-path" {} '' + mkdir -p $out + ln -s ${pkgs.coreutils}/bin/env $out/env + ln -s ${config.system.build.binsh}/bin/sh $out/sh + ''}" + ]; + }; + "/bin" = { + device = "/usr/bin"; + fsType = "none"; + options = [ "bind" ]; + }; + }; +in { + options = { + services.envfs = { + enable = lib.mkEnableOption (lib.mdDoc "Envfs filesystem") // { + description = lib.mdDoc '' + Fuse filesystem that returns symlinks to executables based on the PATH + of the requesting process. This is useful to execute shebangs on NixOS + that assume hard coded locations in locations like /bin or /usr/bin + etc. + ''; + }; + package = lib.mkOption { + type = lib.types.package; + description = lib.mdDoc "Which package to use for the envfs."; + default = pkgs.envfs; + defaultText = lib.mdDoc "pkgs.envfs"; + }; + }; + }; + config = lib.mkIf (cfg.enable) { + environment.systemPackages = [ cfg.package ]; + # we also want these mounts in virtual machines. + fileSystems = if config.virtualisation ? qemu then lib.mkVMOverride mounts else mounts; + + # We no longer need those when using envfs + system.activationScripts.usrbinenv = lib.mkForce ""; + system.activationScripts.binsh = lib.mkForce ""; + }; +} diff --git a/third_party/nixpkgs/nixos/modules/tasks/filesystems/zfs.nix b/third_party/nixpkgs/nixos/modules/tasks/filesystems/zfs.nix index 4b4f4cc801..0f14f2b501 100644 --- a/third_party/nixpkgs/nixos/modules/tasks/filesystems/zfs.nix +++ b/third_party/nixpkgs/nixos/modules/tasks/filesystems/zfs.nix @@ -503,6 +503,10 @@ in assertion = !cfgZfs.forceImportAll || cfgZfs.forceImportRoot; message = "If you enable boot.zfs.forceImportAll, you must also enable boot.zfs.forceImportRoot"; } + { + assertion = cfgZfs.allowHibernation -> !cfgZfs.forceImportRoot && !cfgZfs.forceImportAll; + message = "boot.zfs.allowHibernation while force importing is enabled will cause data corruption"; + } ]; boot = { diff --git a/third_party/nixpkgs/nixos/modules/testing/minimal-kernel.nix b/third_party/nixpkgs/nixos/modules/testing/minimal-kernel.nix deleted file mode 100644 index 7c2b9c05cf..0000000000 --- a/third_party/nixpkgs/nixos/modules/testing/minimal-kernel.nix +++ /dev/null @@ -1,28 +0,0 @@ -{ config, pkgs, lib, ... }: - -let - configfile = builtins.storePath (builtins.toFile "config" (lib.concatStringsSep "\n" - (map (builtins.getAttr "configLine") config.system.requiredKernelConfig)) - ); - - origKernel = pkgs.buildLinux { - inherit (pkgs.linux) src version stdenv; - inherit configfile; - allowImportFromDerivation = true; - kernelPatches = [ pkgs.kernelPatches.cifs_timeout_2_6_38 ]; - }; - - kernel = origKernel // (derivation (origKernel.drvAttrs // { - configurePhase = '' - runHook preConfigure - mkdir ../build - make $makeFlags "''${makeFlagsArray[@]}" mrproper - make $makeFlags "''${makeFlagsArray[@]}" KCONFIG_ALLCONFIG=${configfile} allnoconfig - runHook postConfigure - ''; - })); - - kernelPackages = pkgs.linuxPackagesFor kernel; -in { - boot.kernelPackages = kernelPackages; -} diff --git a/third_party/nixpkgs/nixos/modules/testing/test-instrumentation.nix b/third_party/nixpkgs/nixos/modules/testing/test-instrumentation.nix index 4ab2578eb8..028099c646 100644 --- a/third_party/nixpkgs/nixos/modules/testing/test-instrumentation.nix +++ b/third_party/nixpkgs/nixos/modules/testing/test-instrumentation.nix @@ -96,6 +96,12 @@ in MaxLevelConsole=debug ''; + boot.initrd.systemd.contents."/etc/systemd/journald.conf".text = '' + [Journal] + ForwardToConsole=yes + MaxLevelConsole=debug + ''; + systemd.extraConfig = '' # Don't clobber the console with duplicate systemd messages. ShowStatus=no @@ -107,6 +113,8 @@ in DefaultTimeoutStartSec=300 ''; + boot.initrd.systemd.extraConfig = config.systemd.extraConfig; + boot.consoleLogLevel = 7; # Prevent tests from accessing the Internet. diff --git a/third_party/nixpkgs/nixos/modules/virtualisation/appvm.nix b/third_party/nixpkgs/nixos/modules/virtualisation/appvm.nix index b23b321095..9fe2995d37 100644 --- a/third_party/nixpkgs/nixos/modules/virtualisation/appvm.nix +++ b/third_party/nixpkgs/nixos/modules/virtualisation/appvm.nix @@ -20,7 +20,7 @@ in { user = mkOption { type = types.str; description = lib.mdDoc '' - AppVM user login. Currenly only AppVMs are supported for a single user only. + AppVM user login. Currently only AppVMs are supported for a single user only. ''; }; }; diff --git a/third_party/nixpkgs/nixos/modules/virtualisation/libvirtd.nix b/third_party/nixpkgs/nixos/modules/virtualisation/libvirtd.nix index 3b30bc8c41..7c95405ed3 100644 --- a/third_party/nixpkgs/nixos/modules/virtualisation/libvirtd.nix +++ b/third_party/nixpkgs/nixos/modules/virtualisation/libvirtd.nix @@ -220,6 +220,17 @@ in ''; }; + parallelShutdown = mkOption { + type = types.ints.unsigned; + default = 0; + description = lib.mdDoc '' + Number of guests that will be shutdown concurrently, taking effect when onShutdown + is set to "shutdown". If set to 0, guests will be shutdown one after another. + Number of guests on shutdown at any time will not exceed number set in this + variable. + ''; + }; + allowedBridges = mkOption { type = types.listOf types.str; default = [ "virbr0" ]; @@ -373,6 +384,7 @@ in environment.ON_BOOT = "${cfg.onBoot}"; environment.ON_SHUTDOWN = "${cfg.onShutdown}"; + environment.PARALLEL_SHUTDOWN = "${toString cfg.parallelShutdown}"; }; systemd.sockets.virtlogd = { diff --git a/third_party/nixpkgs/nixos/modules/virtualisation/podman/default.nix b/third_party/nixpkgs/nixos/modules/virtualisation/podman/default.nix index 118bf82cdd..13bbb4471e 100644 --- a/third_party/nixpkgs/nixos/modules/virtualisation/podman/default.nix +++ b/third_party/nixpkgs/nixos/modules/virtualisation/podman/default.nix @@ -109,6 +109,37 @@ in ''; }; + autoPrune = { + enable = mkOption { + type = types.bool; + default = false; + description = lib.mdDoc '' + Whether to periodically prune Podman resources. If enabled, a + systemd timer will run `podman system prune -f` + as specified by the `dates` option. + ''; + }; + + flags = mkOption { + type = types.listOf types.str; + default = []; + example = [ "--all" ]; + description = lib.mdDoc '' + Any additional flags passed to {command}`podman system prune`. + ''; + }; + + dates = mkOption { + default = "weekly"; + type = types.str; + description = lib.mdDoc '' + Specification (in the format described by + {manpage}`systemd.time(7)`) of the time at + which the prune will occur. + ''; + }; + }; + package = lib.mkOption { type = types.package; default = podmanPackage; @@ -151,6 +182,23 @@ in ExecStart = [ "" "${cfg.package}/bin/podman $LOGGING system service" ]; }; + systemd.services.podman-prune = { + description = "Prune podman resources"; + + restartIfChanged = false; + unitConfig.X-StopOnRemoval = false; + + serviceConfig.Type = "oneshot"; + + script = '' + ${cfg.package}/bin/podman system prune -f ${toString cfg.autoPrune.flags} + ''; + + startAt = lib.optional cfg.autoPrune.enable cfg.autoPrune.dates; + after = [ "podman.service" ]; + requires = [ "podman.service" ]; + }; + systemd.sockets.podman.wantedBy = [ "sockets.target" ]; systemd.sockets.podman.socketConfig.SocketGroup = "podman"; diff --git a/third_party/nixpkgs/nixos/modules/virtualisation/proxmox-image.nix b/third_party/nixpkgs/nixos/modules/virtualisation/proxmox-image.nix index 42c52c12ed..6a4220fd26 100644 --- a/third_party/nixpkgs/nixos/modules/virtualisation/proxmox-image.nix +++ b/third_party/nixpkgs/nixos/modules/virtualisation/proxmox-image.nix @@ -28,7 +28,7 @@ with lib; default = "local-lvm:vm-9999-disk-0"; example = "ceph:vm-123-disk-0"; description = lib.mdDoc '' - Configuration for the default virtio disk. It can be used as a cue for PVE to autodetect the target sotrage. + Configuration for the default virtio disk. It can be used as a cue for PVE to autodetect the target storage. This parameter is required by PVE even if it isn't used. ''; }; diff --git a/third_party/nixpkgs/nixos/modules/virtualisation/vmware-host.nix b/third_party/nixpkgs/nixos/modules/virtualisation/vmware-host.nix index e1d695640b..4b2dc28aea 100644 --- a/third_party/nixpkgs/nixos/modules/virtualisation/vmware-host.nix +++ b/third_party/nixpkgs/nixos/modules/virtualisation/vmware-host.nix @@ -120,7 +120,7 @@ in # Services systemd.services."vmware-authdlauncher" = { - description = "VMware Authentification Daemon"; + description = "VMware Authentication Daemon"; serviceConfig = { Type = "forking"; ExecStart = [ "${cfg.package}/bin/vmware-authdlauncher" ]; diff --git a/third_party/nixpkgs/nixos/release.nix b/third_party/nixpkgs/nixos/release.nix index 919aa86a2d..946379bcd6 100644 --- a/third_party/nixpkgs/nixos/release.nix +++ b/third_party/nixpkgs/nixos/release.nix @@ -181,14 +181,22 @@ in rec { inherit system; }); - # A variant with a more recent (but possibly less stable) kernel - # that might support more hardware. + # A variant with a more recent (but possibly less stable) kernel that might support more hardware. + # This variant keeps zfs support enabled, hoping it will build and work. iso_minimal_new_kernel = forMatchingSystems [ "x86_64-linux" "aarch64-linux" ] (system: makeIso { module = ./modules/installer/cd-dvd/installation-cd-minimal-new-kernel.nix; type = "minimal-new-kernel"; inherit system; }); + # A variant with a more recent (but possibly less stable) kernel that might support more hardware. + # ZFS support disabled since it is unlikely to support the latest kernel. + iso_minimal_new_kernel_no_zfs = forMatchingSystems [ "x86_64-linux" "aarch64-linux" ] (system: makeIso { + module = ./modules/installer/cd-dvd/installation-cd-minimal-new-kernel-no-zfs.nix; + type = "minimal-new-kernel-no-zfs"; + inherit system; + }); + sd_image = forMatchingSystems [ "armv6l-linux" "armv7l-linux" "aarch64-linux" ] (system: makeSdImage { module = { armv6l-linux = ./modules/installer/sd-card/sd-image-raspberrypi-installer.nix; @@ -206,6 +214,14 @@ in rec { inherit system; }); + sd_image_new_kernel_no_zfs = forMatchingSystems [ "aarch64-linux" ] (system: makeSdImage { + module = { + aarch64-linux = ./modules/installer/sd-card/sd-image-aarch64-new-kernel-no-zfs-installer.nix; + }.${system}; + type = "minimal-new-kernel-no-zfs"; + inherit system; + }); + # A bootable VirtualBox virtual appliance as an OVA file (i.e. packaged OVF). ova = forMatchingSystems [ "x86_64-linux" ] (system: diff --git a/third_party/nixpkgs/nixos/tests/acme.nix b/third_party/nixpkgs/nixos/tests/acme.nix index d540bc6ec3..d62bf0c0fd 100644 --- a/third_party/nixpkgs/nixos/tests/acme.nix +++ b/third_party/nixpkgs/nixos/tests/acme.nix @@ -144,7 +144,11 @@ in { name = "acme"; - meta.maintainers = lib.teams.acme.members; + meta = { + maintainers = lib.teams.acme.members; + # Hard timeout in seconds. Average run time is about 7 minutes. + timeout = 1800; + }; nodes = { # The fake ACME server which will respond to client requests @@ -277,7 +281,7 @@ in { }; }; - # Test compatiblity with Caddy + # Test compatibility with Caddy # It only supports useACMEHost, hence not using mkServerConfigs } // (let baseCaddyConfig = { nodes, config, ... }: { @@ -357,6 +361,30 @@ in { import time + TOTAL_RETRIES = 20 + + + class BackoffTracker(object): + delay = 1 + increment = 1 + + def handle_fail(self, retries, message) -> int: + assert retries < TOTAL_RETRIES, message + + print(f"Retrying in {self.delay}s, {retries + 1}/{TOTAL_RETRIES}") + time.sleep(self.delay) + + # Only increment after the first try + if retries == 0: + self.delay += self.increment + self.increment *= 2 + + return retries + 1 + + + backoff = BackoffTracker() + + def switch_to(node, name): # On first switch, this will create a symlink to the current system so that we can # quickly switch between derivations @@ -404,9 +432,7 @@ in { assert False - def check_connection(node, domain, retries=3): - assert retries >= 0, f"Failed to connect to https://{domain}" - + def check_connection(node, domain, retries=0): result = node.succeed( "openssl s_client -brief -verify 2 -CAfile /tmp/ca.crt" f" -servername {domain} -connect {domain}:443 < /dev/null 2>&1" @@ -414,13 +440,11 @@ in { for line in result.lower().split("\n"): if "verification" in line and "error" in line: - time.sleep(3) - return check_connection(node, domain, retries - 1) + retries = backoff.handle_fail(retries, f"Failed to connect to https://{domain}") + return check_connection(node, domain, retries) - def check_connection_key_bits(node, domain, bits, retries=3): - assert retries >= 0, f"Did not find expected number of bits ({bits}) in key" - + def check_connection_key_bits(node, domain, bits, retries=0): result = node.succeed( "openssl s_client -CAfile /tmp/ca.crt" f" -servername {domain} -connect {domain}:443 < /dev/null" @@ -429,13 +453,11 @@ in { print("Key type:", result) if bits not in result: - time.sleep(3) - return check_connection_key_bits(node, domain, bits, retries - 1) + retries = backoff.handle_fail(retries, f"Did not find expected number of bits ({bits}) in key") + return check_connection_key_bits(node, domain, bits, retries) - def check_stapling(node, domain, retries=3): - assert retries >= 0, "OCSP Stapling check failed" - + def check_stapling(node, domain, retries=0): # Pebble doesn't provide a full OCSP responder, so just check the URL result = node.succeed( "openssl s_client -CAfile /tmp/ca.crt" @@ -445,21 +467,19 @@ in { print("OCSP Responder URL:", result) if "${caDomain}:4002" not in result.lower(): - time.sleep(3) - return check_stapling(node, domain, retries - 1) + retries = backoff.handle_fail(retries, "OCSP Stapling check failed") + return check_stapling(node, domain, retries) - def download_ca_certs(node, retries=5): - assert retries >= 0, "Failed to connect to pebble to download root CA certs" - + def download_ca_certs(node, retries=0): exit_code, _ = node.execute("curl https://${caDomain}:15000/roots/0 > /tmp/ca.crt") exit_code_2, _ = node.execute( "curl https://${caDomain}:15000/intermediate-keys/0 >> /tmp/ca.crt" ) if exit_code + exit_code_2 > 0: - time.sleep(3) - return download_ca_certs(node, retries - 1) + retries = backoff.handle_fail(retries, "Failed to connect to pebble to download root CA certs") + return download_ca_certs(node, retries) start_all() diff --git a/third_party/nixpkgs/nixos/tests/aesmd.nix b/third_party/nixpkgs/nixos/tests/aesmd.nix index 5da661afd5..848e1c5992 100644 --- a/third_party/nixpkgs/nixos/tests/aesmd.nix +++ b/third_party/nixpkgs/nixos/tests/aesmd.nix @@ -1,7 +1,7 @@ { pkgs, lib, ... }: { name = "aesmd"; meta = { - maintainers = with lib.maintainers; [ veehaitch ]; + maintainers = with lib.maintainers; [ trundle veehaitch ]; }; nodes.machine = { lib, ... }: { @@ -25,38 +25,78 @@ # We don't have a real SGX machine in NixOS tests systemd.services.aesmd.unitConfig.AssertPathExists = lib.mkForce [ ]; + + specialisation = { + withQuoteProvider.configuration = { ... }: { + services.aesmd = { + quoteProviderLibrary = pkgs.sgx-azure-dcap-client; + environment = { + AZDCAP_DEBUG_LOG_LEVEL = "INFO"; + }; + }; + }; + }; }; - testScript = '' - with subtest("aesmd.service starts"): - machine.wait_for_unit("aesmd.service") - status, main_pid = machine.systemctl("show --property MainPID --value aesmd.service") - assert status == 0, "Could not get MainPID of aesmd.service" - main_pid = main_pid.strip() + testScript = { nodes, ... }: + let + specialisations = "${nodes.machine.system.build.toplevel}/specialisation"; + in + '' + def get_aesmd_pid(): + status, main_pid = machine.systemctl("show --property MainPID --value aesmd.service") + assert status == 0, "Could not get MainPID of aesmd.service" + return main_pid.strip() - with subtest("aesmd.service runtime directory permissions"): - runtime_dir = "/run/aesmd"; - res = machine.succeed(f"stat -c '%a %U %G' {runtime_dir}").strip() - assert "750 aesmd sgx" == res, f"{runtime_dir} does not have the expected permissions: {res}" + with subtest("aesmd.service starts"): + machine.wait_for_unit("aesmd.service") - with subtest("aesm.socket available on host"): - socket_path = "/var/run/aesmd/aesm.socket" - machine.wait_until_succeeds(f"test -S {socket_path}") - machine.succeed(f"test 777 -eq $(stat -c '%a' {socket_path})") - for op in [ "-r", "-w", "-x" ]: - machine.succeed(f"sudo -u sgxtest test {op} {socket_path}") - machine.fail(f"sudo -u nosgxtest test {op} {socket_path}") + main_pid = get_aesmd_pid() - with subtest("Copies white_list_cert_to_be_verify.bin"): - whitelist_path = "/var/opt/aesmd/data/white_list_cert_to_be_verify.bin" - whitelist_perms = machine.succeed( - f"nsenter -m -t {main_pid} ${pkgs.coreutils}/bin/stat -c '%a' {whitelist_path}" - ).strip() - assert "644" == whitelist_perms, f"white_list_cert_to_be_verify.bin has permissions {whitelist_perms}" + with subtest("aesmd.service runtime directory permissions"): + runtime_dir = "/run/aesmd"; + res = machine.succeed(f"stat -c '%a %U %G' {runtime_dir}").strip() + assert "750 aesmd sgx" == res, f"{runtime_dir} does not have the expected permissions: {res}" - with subtest("Writes and binds aesm.conf in service namespace"): - aesmd_config = machine.succeed(f"nsenter -m -t {main_pid} ${pkgs.coreutils}/bin/cat /etc/aesmd.conf") + with subtest("aesm.socket available on host"): + socket_path = "/var/run/aesmd/aesm.socket" + machine.wait_until_succeeds(f"test -S {socket_path}") + machine.succeed(f"test 777 -eq $(stat -c '%a' {socket_path})") + for op in [ "-r", "-w", "-x" ]: + machine.succeed(f"sudo -u sgxtest test {op} {socket_path}") + machine.fail(f"sudo -u nosgxtest test {op} {socket_path}") - assert aesmd_config == "whitelist url = http://nixos.org\nproxy type = direct\ndefault quoting type = ecdsa_256\n", "aesmd.conf differs" - ''; + with subtest("Copies white_list_cert_to_be_verify.bin"): + whitelist_path = "/var/opt/aesmd/data/white_list_cert_to_be_verify.bin" + whitelist_perms = machine.succeed( + f"nsenter -m -t {main_pid} ${pkgs.coreutils}/bin/stat -c '%a' {whitelist_path}" + ).strip() + assert "644" == whitelist_perms, f"white_list_cert_to_be_verify.bin has permissions {whitelist_perms}" + + with subtest("Writes and binds aesm.conf in service namespace"): + aesmd_config = machine.succeed(f"nsenter -m -t {main_pid} ${pkgs.coreutils}/bin/cat /etc/aesmd.conf") + + assert aesmd_config == "whitelist url = http://nixos.org\nproxy type = direct\ndefault quoting type = ecdsa_256\n", "aesmd.conf differs" + + with subtest("aesmd.service without quote provider library has correct LD_LIBRARY_PATH"): + status, environment = machine.systemctl("show --property Environment --value aesmd.service") + assert status == 0, "Could not get Environment of aesmd.service" + env_by_name = dict(entry.split("=", 1) for entry in environment.split()) + assert not env_by_name["LD_LIBRARY_PATH"], "LD_LIBRARY_PATH is not empty" + + with subtest("aesmd.service with quote provider library starts"): + machine.succeed('${specialisations}/withQuoteProvider/bin/switch-to-configuration test') + machine.wait_for_unit("aesmd.service") + + main_pid = get_aesmd_pid() + + with subtest("aesmd.service with quote provider library has correct LD_LIBRARY_PATH"): + ld_library_path = machine.succeed(f"xargs -0 -L1 -a /proc/{main_pid}/environ | grep LD_LIBRARY_PATH") + assert ld_library_path.startswith("LD_LIBRARY_PATH=${pkgs.sgx-azure-dcap-client}/lib:"), \ + "LD_LIBRARY_PATH is not set to the configured quote provider library" + + with subtest("aesmd.service with quote provider library has set AZDCAP_DEBUG_LOG_LEVEL"): + azdcp_debug_log_level = machine.succeed(f"xargs -0 -L1 -a /proc/{main_pid}/environ | grep AZDCAP_DEBUG_LOG_LEVEL") + assert azdcp_debug_log_level == "AZDCAP_DEBUG_LOG_LEVEL=INFO\n", "AZDCAP_DEBUG_LOG_LEVEL is not set to INFO" + ''; } diff --git a/third_party/nixpkgs/nixos/tests/akkoma.nix b/third_party/nixpkgs/nixos/tests/akkoma.nix new file mode 100644 index 0000000000..7115c0beed --- /dev/null +++ b/third_party/nixpkgs/nixos/tests/akkoma.nix @@ -0,0 +1,121 @@ +/* + End-to-end test for Akkoma. + + Based in part on nixos/tests/pleroma. + + TODO: Test federation. +*/ +import ./make-test-python.nix ({ pkgs, package ? pkgs.akkoma, confined ? false, ... }: +let + userPassword = "4LKOrGo8SgbPm1a6NclVU5Wb"; + + provisionUser = pkgs.writers.writeBashBin "provisionUser" '' + set -eu -o errtrace -o pipefail + + pleroma_ctl user new jamy jamy@nixos.test --password '${userPassword}' --moderator --admin -y + ''; + + tlsCert = pkgs.runCommand "selfSignedCerts" { + nativeBuildInputs = with pkgs; [ openssl ]; + } '' + mkdir -p $out + openssl req -x509 \ + -subj '/CN=akkoma.nixos.test/' -days 49710 \ + -addext 'subjectAltName = DNS:akkoma.nixos.test' \ + -keyout "$out/key.pem" -newkey ed25519 \ + -out "$out/cert.pem" -noenc + ''; + + sendToot = pkgs.writers.writeBashBin "sendToot" '' + set -eu -o errtrace -o pipefail + + export REQUESTS_CA_BUNDLE="/etc/ssl/certs/ca-certificates.crt" + + echo '${userPassword}' | ${pkgs.toot}/bin/toot login_cli -i "akkoma.nixos.test" -e "jamy@nixos.test" + echo "y" | ${pkgs.toot}/bin/toot post "hello world Jamy here" + echo "y" | ${pkgs.toot}/bin/toot timeline | grep -F -q "hello world Jamy here" + + # Test file upload + echo "y" | ${pkgs.toot}/bin/toot upload <(dd if=/dev/zero bs=1024 count=1024 status=none) \ + | grep -F -q "https://akkoma.nixos.test/media" + ''; + + checkFe = pkgs.writers.writeBashBin "checkFe" '' + set -eu -o errtrace -o pipefail + + paths=( / /static/{config,styles}.json /pleroma/admin/ ) + + for path in "''${paths[@]}"; do + diff \ + <(${pkgs.curl}/bin/curl -f -S -s -o /dev/null -w '%{response_code}' "https://akkoma.nixos.test$path") \ + <(echo -n 200) + done + ''; + + hosts = nodes: '' + ${nodes.akkoma.networking.primaryIPAddress} akkoma.nixos.test + ${nodes.client.networking.primaryIPAddress} client.nixos.test + ''; +in +{ + name = "akkoma"; + nodes = { + client = { nodes, pkgs, config, ... }: { + security.pki.certificateFiles = [ "${tlsCert}/cert.pem" ]; + networking.extraHosts = hosts nodes; + }; + + akkoma = { nodes, pkgs, config, ... }: { + networking.extraHosts = hosts nodes; + networking.firewall.allowedTCPPorts = [ 443 ]; + environment.systemPackages = with pkgs; [ provisionUser ]; + systemd.services.akkoma.confinement.enable = confined; + + services.akkoma = { + enable = true; + package = package; + config = { + ":pleroma" = { + ":instance" = { + name = "NixOS test Akkoma server"; + description = "NixOS test Akkoma server"; + email = "akkoma@nixos.test"; + notify_email = "akkoma@nixos.test"; + registration_open = true; + }; + + ":media_proxy" = { + enabled = false; + }; + + "Pleroma.Web.Endpoint" = { + url.host = "akkoma.nixos.test"; + }; + }; + }; + + nginx = { + addSSL = true; + sslCertificate = "${tlsCert}/cert.pem"; + sslCertificateKey = "${tlsCert}/key.pem"; + }; + }; + + services.nginx.enable = true; + services.postgresql.enable = true; + }; + }; + + testScript = { nodes, ... }: '' + start_all() + akkoma.wait_for_unit('akkoma-initdb.service') + akkoma.systemctl('restart akkoma-initdb.service') # test repeated initialisation + akkoma.wait_for_unit('akkoma.service') + akkoma.wait_for_file('/run/akkoma/socket'); + akkoma.succeed('${provisionUser}/bin/provisionUser') + akkoma.wait_for_unit('nginx.service') + client.succeed('${sendToot}/bin/sendToot') + client.succeed('${checkFe}/bin/checkFe') + ''; +}) + diff --git a/third_party/nixpkgs/nixos/tests/all-tests.nix b/third_party/nixpkgs/nixos/tests/all-tests.nix index 7163d0c8dc..36a5c9843c 100644 --- a/third_party/nixpkgs/nixos/tests/all-tests.nix +++ b/third_party/nixpkgs/nixos/tests/all-tests.nix @@ -69,10 +69,12 @@ in { _3proxy = runTest ./3proxy.nix; acme = runTest ./acme.nix; adguardhome = runTest ./adguardhome.nix; - aesmd = runTest ./aesmd.nix; + aesmd = runTestOn ["x86_64-linux"] ./aesmd.nix; agate = runTest ./web-servers/agate.nix; agda = handleTest ./agda.nix {}; airsonic = handleTest ./airsonic.nix {}; + akkoma = handleTestOn [ "x86_64-linux" "aarch64-linux" ] ./akkoma.nix {}; + akkoma-confined = handleTestOn [ "x86_64-linux" "aarch64-linux" ] ./akkoma.nix { confined = true; }; allTerminfo = handleTest ./all-terminfo.nix {}; alps = handleTest ./alps.nix {}; amazon-init-shell = handleTest ./amazon-init-shell.nix {}; @@ -96,6 +98,7 @@ in { blockbook-frontend = handleTest ./blockbook-frontend.nix {}; blocky = handleTest ./blocky.nix {}; boot = handleTestOn ["x86_64-linux" "aarch64-linux"] ./boot.nix {}; + bootspec = handleTestOn ["x86_64-linux"] ./bootspec.nix {}; boot-stage1 = handleTest ./boot-stage1.nix {}; borgbackup = handleTest ./borgbackup.nix {}; botamusique = handleTest ./botamusique.nix {}; @@ -152,6 +155,7 @@ in { coturn = handleTest ./coturn.nix {}; couchdb = handleTest ./couchdb.nix {}; cri-o = handleTestOn ["aarch64-linux" "x86_64-linux"] ./cri-o.nix {}; + cups-pdf = handleTest ./cups-pdf.nix {}; custom-ca = handleTest ./custom-ca.nix {}; croc = handleTest ./croc.nix {}; deluge = handleTest ./deluge.nix {}; @@ -191,6 +195,7 @@ in { engelsystem = handleTest ./engelsystem.nix {}; enlightenment = handleTest ./enlightenment.nix {}; env = handleTest ./env.nix {}; + envfs = handleTest ./envfs.nix {}; envoy = handleTest ./envoy.nix {}; ergo = handleTest ./ergo.nix {}; ergochat = handleTest ./ergochat.nix {}; @@ -210,7 +215,8 @@ in { firefox-esr = handleTest ./firefox.nix { firefoxPackage = pkgs.firefox-esr; }; # used in `tested` job firefox-esr-102 = handleTest ./firefox.nix { firefoxPackage = pkgs.firefox-esr-102; }; firejail = handleTest ./firejail.nix {}; - firewall = handleTest ./firewall.nix {}; + firewall = handleTest ./firewall.nix { nftables = false; }; + firewall-nftables = handleTest ./firewall.nix { nftables = true; }; fish = handleTest ./fish.nix {}; flannel = handleTestOn ["x86_64-linux"] ./flannel.nix {}; fluentd = handleTest ./fluentd.nix {}; @@ -256,6 +262,7 @@ in { haste-server = handleTest ./haste-server.nix {}; haproxy = handleTest ./haproxy.nix {}; hardened = handleTest ./hardened.nix {}; + headscale = handleTest ./headscale.nix {}; healthchecks = handleTest ./web-apps/healthchecks.nix {}; hbase2 = handleTest ./hbase.nix { package=pkgs.hbase2; }; hbase_2_4 = handleTest ./hbase.nix { package=pkgs.hbase_2_4; }; @@ -411,6 +418,9 @@ in { nat.firewall = handleTest ./nat.nix { withFirewall = true; }; nat.firewall-conntrack = handleTest ./nat.nix { withFirewall = true; withConntrackHelpers = true; }; nat.standalone = handleTest ./nat.nix { withFirewall = false; }; + nat.nftables.firewall = handleTest ./nat.nix { withFirewall = true; nftables = true; }; + nat.nftables.firewall-conntrack = handleTest ./nat.nix { withFirewall = true; withConntrackHelpers = true; nftables = true; }; + nat.nftables.standalone = handleTest ./nat.nix { withFirewall = false; nftables = true; }; nats = handleTest ./nats.nix {}; navidrome = handleTest ./navidrome.nix {}; nbd = handleTest ./nbd.nix {}; @@ -435,6 +445,7 @@ in { nginx = handleTest ./nginx.nix {}; nginx-auth = handleTest ./nginx-auth.nix {}; nginx-etag = handleTest ./nginx-etag.nix {}; + nginx-globalredirect = handleTest ./nginx-globalredirect.nix {}; nginx-http3 = handleTest ./nginx-http3.nix {}; nginx-modsecurity = handleTest ./nginx-modsecurity.nix {}; nginx-njs = handleTest ./nginx-njs.nix {}; diff --git a/third_party/nixpkgs/nixos/tests/bootspec.nix b/third_party/nixpkgs/nixos/tests/bootspec.nix index 13360bb1ea..077dff918e 100644 --- a/third_party/nixpkgs/nixos/tests/bootspec.nix +++ b/third_party/nixpkgs/nixos/tests/bootspec.nix @@ -43,7 +43,7 @@ in machine.start() machine.wait_for_unit("multi-user.target") - machine.succeed("test -e /run/current-system/bootspec/boot.json") + machine.succeed("test -e /run/current-system/boot.json") ''; }; @@ -65,7 +65,7 @@ in machine.start() machine.wait_for_unit("multi-user.target") - machine.succeed("test -e /run/current-system/bootspec/boot.json") + machine.succeed("test -e /run/current-system/boot.json") ''; }; @@ -86,7 +86,33 @@ in machine.start() machine.wait_for_unit("multi-user.target") + machine.succeed("test -e /run/current-system/boot.json") + ''; + }; + + # Check that initrd create corresponding entries in bootspec. + initrd = makeTest { + name = "bootspec-with-initrd"; + meta.maintainers = with pkgs.lib.maintainers; [ raitobezarius ]; + + nodes.machine = { + imports = [ standard ]; + environment.systemPackages = [ pkgs.jq ]; + # It's probably the case, but we want to make it explicit here. + boot.initrd.enable = true; + }; + + testScript = '' + import json + + machine.start() + machine.wait_for_unit("multi-user.target") + machine.succeed("test -e /run/current-system/bootspec/boot.json") + + bootspec = json.loads(machine.succeed("jq -r '.v1' /run/current-system/bootspec/boot.json")) + + assert all(key in bootspec for key in ('initrd', 'initrdSecrets')), "Bootspec should contain initrd or initrdSecrets field when initrd is enabled" ''; }; @@ -107,11 +133,11 @@ in machine.start() machine.wait_for_unit("multi-user.target") - machine.succeed("test -e /run/current-system/bootspec/boot.json") - machine.succeed("test -e /run/current-system/specialisation/something/bootspec/boot.json") + machine.succeed("test -e /run/current-system/boot.json") + machine.succeed("test -e /run/current-system/specialisation/something/boot.json") - sp_in_parent = json.loads(machine.succeed("jq -r '.v1.specialisation.something' /run/current-system/bootspec/boot.json")) - sp_in_fs = json.loads(machine.succeed("cat /run/current-system/specialisation/something/bootspec/boot.json")) + sp_in_parent = json.loads(machine.succeed("jq -r '.v1.specialisation.something' /run/current-system/boot.json")) + sp_in_fs = json.loads(machine.succeed("cat /run/current-system/specialisation/something/boot.json")) assert sp_in_parent == sp_in_fs['v1'], "Bootspecs of the same specialisation are different!" ''; @@ -135,7 +161,7 @@ in machine.wait_for_unit("multi-user.target") current_os_release = machine.succeed("cat /etc/os-release") - bootspec_os_release = machine.succeed("cat $(jq -r '.v1.extensions.osRelease' /run/current-system/bootspec/boot.json)") + bootspec_os_release = machine.succeed("cat $(jq -r '.v1.extensions.osRelease' /run/current-system/boot.json)") assert current_os_release == bootspec_os_release, "Filename referenced by extension has unexpected contents" ''; diff --git a/third_party/nixpkgs/nixos/tests/cockroachdb.nix b/third_party/nixpkgs/nixos/tests/cockroachdb.nix index d793842f0a..5b1e1a7dee 100644 --- a/third_party/nixpkgs/nixos/tests/cockroachdb.nix +++ b/third_party/nixpkgs/nixos/tests/cockroachdb.nix @@ -8,7 +8,7 @@ # Cluster joins that are outside this window will fail, and nodes that skew # outside the window after joining will promptly get kicked out. # -# To accomodate this, we use QEMU/virtio infrastructure and load the 'ptp_kvm' +# To accommodate this, we use QEMU/virtio infrastructure and load the 'ptp_kvm' # driver inside a guest. This driver allows the host machine to pass its clock # through to the guest as a hardware clock that appears as a Precision Time # Protocol (PTP) Clock device, generally /dev/ptp0. PTP devices can be measured diff --git a/third_party/nixpkgs/nixos/tests/common/ec2.nix b/third_party/nixpkgs/nixos/tests/common/ec2.nix index 64b0a91ac1..6ed420e0aa 100644 --- a/third_party/nixpkgs/nixos/tests/common/ec2.nix +++ b/third_party/nixpkgs/nixos/tests/common/ec2.nix @@ -46,7 +46,7 @@ with pkgs.lib; # Note: we use net=169.0.0.0/8 rather than # net=169.254.0.0/16 to prevent dhcpcd from getting horribly # confused. (It would get a DHCP lease in the 169.254.* - # range, which it would then configure and prompty delete + # range, which it would then configure and promptly delete # again when it deletes link-local addresses.) Ideally we'd # turn off the DHCP server, but qemu does not have an option # to do that. diff --git a/third_party/nixpkgs/nixos/tests/cups-pdf.nix b/third_party/nixpkgs/nixos/tests/cups-pdf.nix new file mode 100644 index 0000000000..70d14f29e2 --- /dev/null +++ b/third_party/nixpkgs/nixos/tests/cups-pdf.nix @@ -0,0 +1,40 @@ +import ./make-test-python.nix ({ lib, pkgs, ... }: { + name = "cups-pdf"; + + nodes.machine = { pkgs, ... }: { + imports = [ ./common/user-account.nix ]; + environment.systemPackages = [ pkgs.poppler_utils ]; + fonts.fonts = [ pkgs.dejavu_fonts ]; # yields more OCR-able pdf + services.printing.cups-pdf.enable = true; + services.printing.cups-pdf.instances = { + opt = {}; + noopt.installPrinter = false; + }; + hardware.printers.ensurePrinters = [{ + name = "noopt"; + model = "CUPS-PDF_noopt.ppd"; + deviceUri = "cups-pdf:/noopt"; + }]; + }; + + # we cannot check the files with pdftotext, due to + # https://github.com/alexivkin/CUPS-PDF-to-PDF/issues/7 + # we need `imagemagickBig` as it has ghostscript support + + testScript = '' + from subprocess import run + machine.wait_for_unit("cups.service") + for name in ("opt", "noopt"): + text = f"test text {name}".upper() + machine.wait_until_succeeds(f"lpstat -v {name}") + machine.succeed(f"su - alice -c 'echo -e \"\n {text}\" | lp -d {name}'") + # wait until the pdf files are completely produced and readable by alice + machine.wait_until_succeeds(f"su - alice -c 'pdfinfo /var/spool/cups-pdf-{name}/users/alice/*.pdf'") + machine.succeed(f"cp /var/spool/cups-pdf-{name}/users/alice/*.pdf /tmp/{name}.pdf") + machine.copy_from_vm(f"/tmp/{name}.pdf", "") + run(f"${pkgs.imagemagickBig}/bin/convert -density 300 $out/{name}.pdf $out/{name}.jpeg", shell=True, check=True) + assert text.encode() in run(f"${lib.getExe pkgs.tesseract} $out/{name}.jpeg stdout", shell=True, check=True, capture_output=True).stdout + ''; + + meta.maintainers = [ lib.maintainers.yarny ]; +}) diff --git a/third_party/nixpkgs/nixos/tests/envfs.nix b/third_party/nixpkgs/nixos/tests/envfs.nix new file mode 100644 index 0000000000..3f9cd1edb5 --- /dev/null +++ b/third_party/nixpkgs/nixos/tests/envfs.nix @@ -0,0 +1,42 @@ +import ./make-test-python.nix ({ lib, pkgs, ... }: +let + pythonShebang = pkgs.writeScript "python-shebang" '' + #!/usr/bin/python + print("OK") + ''; + + bashShebang = pkgs.writeScript "bash-shebang" '' + #!/usr/bin/bash + echo "OK" + ''; +in +{ + name = "envfs"; + nodes.machine.services.envfs.enable = true; + + testScript = '' + start_all() + machine.wait_until_succeeds("mountpoint -q /usr/bin/") + machine.succeed( + "PATH=${pkgs.coreutils}/bin /usr/bin/cp --version", + # check fallback paths + "PATH= /usr/bin/sh --version", + "PATH= /usr/bin/env --version", + "PATH= test -e /usr/bin/sh", + "PATH= test -e /usr/bin/env", + # no stat + "! test -e /usr/bin/cp", + # also picks up PATH that was set after execve + "! /usr/bin/hello", + "PATH=${pkgs.hello}/bin /usr/bin/hello", + ) + + out = machine.succeed("PATH=${pkgs.python3}/bin ${pythonShebang}") + print(out) + assert out == "OK\n" + + out = machine.succeed("PATH=${pkgs.bash}/bin ${bashShebang}") + print(out) + assert out == "OK\n" + ''; +}) diff --git a/third_party/nixpkgs/nixos/tests/firewall.nix b/third_party/nixpkgs/nixos/tests/firewall.nix index 5c434c1cb6..dd7551f143 100644 --- a/third_party/nixpkgs/nixos/tests/firewall.nix +++ b/third_party/nixpkgs/nixos/tests/firewall.nix @@ -1,7 +1,7 @@ # Test the firewall module. -import ./make-test-python.nix ( { pkgs, ... } : { - name = "firewall"; +import ./make-test-python.nix ( { pkgs, nftables, ... } : { + name = "firewall" + pkgs.lib.optionalString nftables "-nftables"; meta = with pkgs.lib.maintainers; { maintainers = [ eelco ]; }; @@ -11,6 +11,7 @@ import ./make-test-python.nix ( { pkgs, ... } : { { ... }: { networking.firewall.enable = true; networking.firewall.logRefusedPackets = true; + networking.nftables.enable = nftables; services.httpd.enable = true; services.httpd.adminAddr = "foo@example.org"; }; @@ -23,6 +24,7 @@ import ./make-test-python.nix ( { pkgs, ... } : { { ... }: { networking.firewall.enable = true; networking.firewall.rejectPackets = true; + networking.nftables.enable = nftables; }; attacker = @@ -35,10 +37,11 @@ import ./make-test-python.nix ( { pkgs, ... } : { testScript = { nodes, ... }: let newSystem = nodes.walled2.config.system.build.toplevel; + unit = if nftables then "nftables" else "firewall"; in '' start_all() - walled.wait_for_unit("firewall") + walled.wait_for_unit("${unit}") walled.wait_for_unit("httpd") attacker.wait_for_unit("network.target") @@ -54,12 +57,12 @@ import ./make-test-python.nix ( { pkgs, ... } : { walled.succeed("ping -c 1 attacker >&2") # If we stop the firewall, then connections should succeed. - walled.stop_job("firewall") + walled.stop_job("${unit}") attacker.succeed("curl -v http://walled/ >&2") # Check whether activation of a new configuration reloads the firewall. walled.succeed( - "${newSystem}/bin/switch-to-configuration test 2>&1 | grep -qF firewall.service" + "${newSystem}/bin/switch-to-configuration test 2>&1 | grep -qF ${unit}.service" ) ''; }) diff --git a/third_party/nixpkgs/nixos/tests/grafana/basic.nix b/third_party/nixpkgs/nixos/tests/grafana/basic.nix index f6566d4497..8bf4caad7f 100644 --- a/third_party/nixpkgs/nixos/tests/grafana/basic.nix +++ b/third_party/nixpkgs/nixos/tests/grafana/basic.nix @@ -25,6 +25,22 @@ let extraNodeConfs = { sqlite = {}; + socket = { config, ... }: { + services.grafana.settings.server = { + protocol = "socket"; + socket = "/run/grafana/sock"; + socket_gid = config.users.groups.nginx.gid; + }; + + users.users.grafana.extraGroups = [ "nginx" ]; + + services.nginx = { + enable = true; + recommendedProxySettings = true; + virtualHosts."_".locations."/".proxyPass = "http://unix:/run/grafana/sock"; + }; + }; + declarativePlugins = { services.grafana.declarativePlugins = [ pkgs.grafanaPlugins.grafana-clock-panel ]; }; @@ -92,6 +108,17 @@ in { ) sqlite.shutdown() + with subtest("Successful API query as admin user with sqlite db listening on socket"): + socket.wait_for_unit("grafana.service") + socket.wait_for_open_port(80) + print(socket.succeed( + "curl -sSfN -u testadmin:snakeoilpwd http://127.0.0.1/api/org/users -i" + )) + socket.succeed( + "curl -sSfN -u testadmin:snakeoilpwd http://127.0.0.1/api/org/users | grep admin\@localhost" + ) + socket.shutdown() + with subtest("Successful API query as admin user with postgresql db"): postgresql.wait_for_unit("grafana.service") postgresql.wait_for_unit("postgresql.service") diff --git a/third_party/nixpkgs/nixos/tests/graphite.nix b/third_party/nixpkgs/nixos/tests/graphite.nix index c534d45428..de6cd8a50e 100644 --- a/third_party/nixpkgs/nixos/tests/graphite.nix +++ b/third_party/nixpkgs/nixos/tests/graphite.nix @@ -13,7 +13,7 @@ import ./make-test-python.nix ({ pkgs, ... } : ''; }; carbon.enableCache = true; - seyren.enable = false; # Implicitely requires openssl-1.0.2u which is marked insecure + seyren.enable = false; # Implicitly requires openssl-1.0.2u which is marked insecure }; }; }; diff --git a/third_party/nixpkgs/nixos/tests/headscale.nix b/third_party/nixpkgs/nixos/tests/headscale.nix new file mode 100644 index 0000000000..48658b5dad --- /dev/null +++ b/third_party/nixpkgs/nixos/tests/headscale.nix @@ -0,0 +1,17 @@ +import ./make-test-python.nix ({ pkgs, lib, ... }: { + name = "headscale"; + meta.maintainers = with lib.maintainers; [ misterio77 ]; + + nodes.machine = { ... }: { + services.headscale.enable = true; + environment.systemPackages = [ pkgs.headscale ]; + }; + + testScript = '' + machine.wait_for_unit("headscale") + machine.wait_for_open_port(8080) + # Test basic funcionality + machine.succeed("headscale namespaces create test") + machine.succeed("headscale preauthkeys -n test create") + ''; +}) diff --git a/third_party/nixpkgs/nixos/tests/home-assistant.nix b/third_party/nixpkgs/nixos/tests/home-assistant.nix index 0bbeffd18c..8d58de75ea 100644 --- a/third_party/nixpkgs/nixos/tests/home-assistant.nix +++ b/third_party/nixpkgs/nixos/tests/home-assistant.nix @@ -120,7 +120,7 @@ in { start_all() # Parse the package path out of the systemd unit, as we cannot - # access the final package, that is overriden inside the module, + # access the final package, that is overridden inside the module, # by any other means. pattern = re.compile(r"path=(?P[\/a-z0-9-.]+)\/bin\/hass") response = hass.execute("systemctl show -p ExecStart home-assistant.service")[1] diff --git a/third_party/nixpkgs/nixos/tests/initrd-network-openvpn/default.nix b/third_party/nixpkgs/nixos/tests/initrd-network-openvpn/default.nix index bb4c41e6d7..dbb34c28ee 100644 --- a/third_party/nixpkgs/nixos/tests/initrd-network-openvpn/default.nix +++ b/third_party/nixpkgs/nixos/tests/initrd-network-openvpn/default.nix @@ -91,6 +91,7 @@ import ../make-test-python.nix ({ lib, ...}: config = '' dev tun0 ifconfig 10.8.0.1 10.8.0.2 + cipher AES-256-CBC ${secretblock} ''; }; diff --git a/third_party/nixpkgs/nixos/tests/initrd-network-openvpn/initrd.ovpn b/third_party/nixpkgs/nixos/tests/initrd-network-openvpn/initrd.ovpn index 5926a48af0..3ada4130e8 100644 --- a/third_party/nixpkgs/nixos/tests/initrd-network-openvpn/initrd.ovpn +++ b/third_party/nixpkgs/nixos/tests/initrd-network-openvpn/initrd.ovpn @@ -3,6 +3,7 @@ dev tun ifconfig 10.8.0.2 10.8.0.1 # Only force VLAN 2 through the VPN route 192.168.2.0 255.255.255.0 10.8.0.1 +cipher AES-256-CBC secret [inline] # @@ -26,4 +27,4 @@ be5a69522a8e60ccb217f8521681b45d e7811584363597599cce2040a68ac00e f2125540e0f7f4adc37cb3f0d922eeb7 -----END OpenVPN Static key V1----- - \ No newline at end of file + diff --git a/third_party/nixpkgs/nixos/tests/keymap.nix b/third_party/nixpkgs/nixos/tests/keymap.nix index 4306a9ae2c..0bde21093b 100644 --- a/third_party/nixpkgs/nixos/tests/keymap.nix +++ b/third_party/nixpkgs/nixos/tests/keymap.nix @@ -64,7 +64,6 @@ let # wait for reader to be ready machine.wait_for_file("${readyFile}") - machine.sleep(1) # send all keys for key in inputs: @@ -78,9 +77,18 @@ let with open("${pkgs.writeText "tests.json" (builtins.toJSON tests)}") as json_file: tests = json.load(json_file) + # These environments used to run in the opposite order, causing the + # following error at openvt startup. + # + # openvt: Couldn't deallocate console 1 + # + # This error did not appear in successful runs. + # I don't know the exact cause, but I it seems that openvt and X are + # fighting over the virtual terminal. This does not appear to be a problem + # when the X test runs first. keymap_environments = { - "VT Keymap": "openvt -sw --", "Xorg Keymap": "DISPLAY=:0 xterm -title testterm -class testterm -fullscreen -e", + "VT Keymap": "openvt -sw --", } machine.wait_for_x() diff --git a/third_party/nixpkgs/nixos/tests/nat.nix b/third_party/nixpkgs/nixos/tests/nat.nix index 545eb46f2b..912a04deae 100644 --- a/third_party/nixpkgs/nixos/tests/nat.nix +++ b/third_party/nixpkgs/nixos/tests/nat.nix @@ -3,14 +3,16 @@ # client on the inside network, a server on the outside network, and a # router connected to both that performs Network Address Translation # for the client. -import ./make-test-python.nix ({ pkgs, lib, withFirewall, withConntrackHelpers ? false, ... }: +import ./make-test-python.nix ({ pkgs, lib, withFirewall, withConntrackHelpers ? false, nftables ? false, ... }: let - unit = if withFirewall then "firewall" else "nat"; + unit = if nftables then "nftables" else (if withFirewall then "firewall" else "nat"); routerBase = lib.mkMerge [ { virtualisation.vlans = [ 2 1 ]; networking.firewall.enable = withFirewall; + networking.firewall.filterForward = nftables; + networking.nftables.enable = nftables; networking.nat.internalIPs = [ "192.168.1.0/24" ]; networking.nat.externalInterface = "eth1"; } @@ -21,7 +23,8 @@ import ./make-test-python.nix ({ pkgs, lib, withFirewall, withConntrackHelpers ? ]; in { - name = "nat" + (if withFirewall then "WithFirewall" else "Standalone") + name = "nat" + (lib.optionalString nftables "Nftables") + + (if withFirewall then "WithFirewall" else "Standalone") + (lib.optionalString withConntrackHelpers "withConntrackHelpers"); meta = with pkgs.lib.maintainers; { maintainers = [ eelco rob ]; @@ -34,6 +37,7 @@ import ./make-test-python.nix ({ pkgs, lib, withFirewall, withConntrackHelpers ? { virtualisation.vlans = [ 1 ]; networking.defaultGateway = (pkgs.lib.head nodes.router.config.networking.interfaces.eth2.ipv4.addresses).address; + networking.nftables.enable = nftables; } (lib.optionalAttrs withConntrackHelpers { networking.firewall.connectionTrackingModules = [ "ftp" ]; @@ -111,7 +115,7 @@ import ./make-test-python.nix ({ pkgs, lib, withFirewall, withConntrackHelpers ? # FIXME: this should not be necessary, but nat.service is not started because # network.target is not triggered # (https://github.com/NixOS/nixpkgs/issues/16230#issuecomment-226408359) - ${lib.optionalString (!withFirewall) '' + ${lib.optionalString (!withFirewall && !nftables) '' router.succeed("systemctl start nat.service") ''} client.succeed("curl --fail http://server/ >&2") diff --git a/third_party/nixpkgs/nixos/tests/networking-proxy.nix b/third_party/nixpkgs/nixos/tests/networking-proxy.nix index fcb2558cf3..330bac2588 100644 --- a/third_party/nixpkgs/nixos/tests/networking-proxy.nix +++ b/third_party/nixpkgs/nixos/tests/networking-proxy.nix @@ -37,7 +37,7 @@ in import ./make-test-python.nix ({ pkgs, ...} : { default-config // { networking.proxy = { - # useless because overriden by the next options + # useless because overridden by the next options default = "http://user:pass@host:port"; # advanced proxy setup httpProxy = "123-http://user:pass@http-host:port"; diff --git a/third_party/nixpkgs/nixos/tests/nginx-globalredirect.nix b/third_party/nixpkgs/nixos/tests/nginx-globalredirect.nix new file mode 100644 index 0000000000..5f5f4f344d --- /dev/null +++ b/third_party/nixpkgs/nixos/tests/nginx-globalredirect.nix @@ -0,0 +1,24 @@ +import ./make-test-python.nix ({ pkgs, ... }: { + name = "nginx-globalredirect"; + + nodes = { + webserver = { pkgs, lib, ... }: { + services.nginx = { + enable = true; + virtualHosts.localhost = { + globalRedirect = "other.example.com"; + # Add an exception + locations."/noredirect".return = "200 'foo'"; + }; + }; + }; + }; + + testScript = '' + webserver.wait_for_unit("nginx") + webserver.wait_for_open_port(80) + + webserver.succeed("curl --fail -si http://localhost/alf | grep '^Location:.*/alf'") + webserver.fail("curl --fail -si http://localhost/noredirect | grep '^Location:'") + ''; +}) diff --git a/third_party/nixpkgs/nixos/tests/nginx.nix b/third_party/nixpkgs/nixos/tests/nginx.nix index d9d073822a..73f1133bd6 100644 --- a/third_party/nixpkgs/nixos/tests/nginx.nix +++ b/third_party/nixpkgs/nixos/tests/nginx.nix @@ -61,7 +61,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { specialisation.reloadWithErrorsSystem.configuration = { services.nginx.package = pkgs.nginxMainline; - services.nginx.virtualHosts."!@$$(#*%".locations."~@#*$*!)".proxyPass = ";;;"; + services.nginx.virtualHosts."hello".extraConfig = "access_log /does/not/exist.log;"; }; }; }; diff --git a/third_party/nixpkgs/nixos/tests/nix-ld.nix b/third_party/nixpkgs/nixos/tests/nix-ld.nix index ae5297ab87..8733f5b0c3 100644 --- a/third_party/nixpkgs/nixos/tests/nix-ld.nix +++ b/third_party/nixpkgs/nixos/tests/nix-ld.nix @@ -12,9 +12,6 @@ import ./make-test-python.nix ({ lib, pkgs, ...} : }; testScript = '' start_all() - path = "${pkgs.stdenv.cc}/nix-support/dynamic-linker" - with open(path) as f: - real_ld = f.read().strip() - machine.succeed(f"NIX_LD={real_ld} hello") + machine.succeed("hello") ''; }) diff --git a/third_party/nixpkgs/nixos/tests/os-prober.nix b/third_party/nixpkgs/nixos/tests/os-prober.nix index 1c89cf8c1c..8f3e249404 100644 --- a/third_party/nixpkgs/nixos/tests/os-prober.nix +++ b/third_party/nixpkgs/nixos/tests/os-prober.nix @@ -1,7 +1,7 @@ import ./make-test-python.nix ({pkgs, lib, ...}: let # A filesystem image with a (presumably) bootable debian - debianImage = pkgs.vmTools.diskImageFuns.debian9i386 { + debianImage = pkgs.vmTools.diskImageFuns.debian11i386 { # os-prober cannot detect systems installed on disks without a partition table # so we create the disk ourselves createRootFS = with pkgs; '' diff --git a/third_party/nixpkgs/nixos/tests/pgadmin4-standalone.nix b/third_party/nixpkgs/nixos/tests/pgadmin4-standalone.nix index 442570c530..5aa17fcb5b 100644 --- a/third_party/nixpkgs/nixos/tests/pgadmin4-standalone.nix +++ b/third_party/nixpkgs/nixos/tests/pgadmin4-standalone.nix @@ -1,5 +1,5 @@ import ./make-test-python.nix ({ pkgs, lib, ... }: - # This is seperate from pgadmin4 since we don't want both running at once + # This is separate from pgadmin4 since we don't want both running at once { name = "pgadmin4-standalone"; diff --git a/third_party/nixpkgs/nixos/tests/pgadmin4.nix b/third_party/nixpkgs/nixos/tests/pgadmin4.nix index bec2554a3f..2a2b5aaa28 100644 --- a/third_party/nixpkgs/nixos/tests/pgadmin4.nix +++ b/third_party/nixpkgs/nixos/tests/pgadmin4.nix @@ -106,7 +106,7 @@ import ./make-test-python.nix ({ pkgs, lib, buildDeps ? [ ], pythonEnv ? [ ], .. && sed -i 's|driver_local.maximize_window()||' web/regression/runtests.py" ) - # Don't bother to test LDAP or kerberos authentification + # Don't bother to test LDAP or kerberos authentication with subtest("run browser test"): machine.succeed( 'cd ${pgadmin4SrcDir}/pgadmin4-${pkgs.pgadmin4.version}/web \ diff --git a/third_party/nixpkgs/nixos/tests/postgresql.nix b/third_party/nixpkgs/nixos/tests/postgresql.nix index 7864f5d6ff..7e0a82c388 100644 --- a/third_party/nixpkgs/nixos/tests/postgresql.nix +++ b/third_party/nixpkgs/nixos/tests/postgresql.nix @@ -130,8 +130,97 @@ let ''; }; + + mk-ensure-clauses-test = postgresql-name: postgresql-package: makeTest { + name = postgresql-name; + meta = with pkgs.lib.maintainers; { + maintainers = [ zagy ]; + }; + + machine = {...}: + { + services.postgresql = { + enable = true; + package = postgresql-package; + ensureUsers = [ + { + name = "all-clauses"; + ensureClauses = { + superuser = true; + createdb = true; + createrole = true; + "inherit" = true; + login = true; + replication = true; + bypassrls = true; + }; + } + { + name = "default-clauses"; + } + ]; + }; + }; + + testScript = let + getClausesQuery = user: pkgs.lib.concatStringsSep " " + [ + "SELECT row_to_json(row)" + "FROM (" + "SELECT" + "rolsuper," + "rolinherit," + "rolcreaterole," + "rolcreatedb," + "rolcanlogin," + "rolreplication," + "rolbypassrls" + "FROM pg_roles" + "WHERE rolname = '${user}'" + ") row;" + ]; + in '' + import json + machine.start() + machine.wait_for_unit("postgresql") + + with subtest("All user permissions are set according to the ensureClauses attr"): + clauses = json.loads( + machine.succeed( + "sudo -u postgres psql -tc \"${getClausesQuery "all-clauses"}\"" + ) + ) + print(clauses) + assert clauses['rolsuper'], 'expected user with clauses to have superuser clause' + assert clauses['rolinherit'], 'expected user with clauses to have inherit clause' + assert clauses['rolcreaterole'], 'expected user with clauses to have create role clause' + assert clauses['rolcreatedb'], 'expected user with clauses to have create db clause' + assert clauses['rolcanlogin'], 'expected user with clauses to have login clause' + assert clauses['rolreplication'], 'expected user with clauses to have replication clause' + assert clauses['rolbypassrls'], 'expected user with clauses to have bypassrls clause' + + with subtest("All user permissions default when ensureClauses is not provided"): + clauses = json.loads( + machine.succeed( + "sudo -u postgres psql -tc \"${getClausesQuery "default-clauses"}\"" + ) + ) + assert not clauses['rolsuper'], 'expected user with no clauses set to have default superuser clause' + assert clauses['rolinherit'], 'expected user with no clauses set to have default inherit clause' + assert not clauses['rolcreaterole'], 'expected user with no clauses set to have default create role clause' + assert not clauses['rolcreatedb'], 'expected user with no clauses set to have default create db clause' + assert clauses['rolcanlogin'], 'expected user with no clauses set to have default login clause' + assert not clauses['rolreplication'], 'expected user with no clauses set to have default replication clause' + assert not clauses['rolbypassrls'], 'expected user with no clauses set to have default bypassrls clause' + + machine.shutdown() + ''; + }; in - (mapAttrs' (name: package: { inherit name; value=make-postgresql-test name package false;}) postgresql-versions) // { + concatMapAttrs (name: package: { + ${name} = make-postgresql-test name package false; + ${name + "-clauses"} = mk-ensure-clauses-test name package; + }) postgresql-versions + // { postgresql_11-backup-all = make-postgresql-test "postgresql_11-backup-all" postgresql-versions.postgresql_11 true; } - diff --git a/third_party/nixpkgs/nixos/tests/prometheus-exporters.nix b/third_party/nixpkgs/nixos/tests/prometheus-exporters.nix index 7264bd5a49..5f50a3f87d 100644 --- a/third_party/nixpkgs/nixos/tests/prometheus-exporters.nix +++ b/third_party/nixpkgs/nixos/tests/prometheus-exporters.nix @@ -1172,6 +1172,25 @@ let ''; }; + statsd = { + exporterConfig = { + enable = true; + }; + exporterTest = '' + wait_for_unit("prometheus-statsd-exporter.service") + wait_for_open_port(9102) + succeed("curl http://localhost:9102/metrics | grep 'statsd_exporter_build_info{'") + succeed( + "echo 'test.udp:1|c' > /dev/udp/localhost/9125", + "curl http://localhost:9102/metrics | grep 'test_udp 1'", + ) + succeed( + "echo 'test.tcp:1|c' > /dev/tcp/localhost/9125", + "curl http://localhost:9102/metrics | grep 'test_tcp 1'", + ) + ''; + }; + surfboard = { exporterConfig = { enable = true; diff --git a/third_party/nixpkgs/nixos/tests/sourcehut.nix b/third_party/nixpkgs/nixos/tests/sourcehut.nix index d52fbddd20..9caa1bcd98 100644 --- a/third_party/nixpkgs/nixos/tests/sourcehut.nix +++ b/third_party/nixpkgs/nixos/tests/sourcehut.nix @@ -35,7 +35,7 @@ let }; security.sudo.wheelNeedsPassword = false; - nix.trustedUsers = [ "root" "build" ]; + nix.settings.trusted-users = [ "root" "build" ]; documentation.nixos.enable = false; # builds.sr.ht-image-specific network settings diff --git a/third_party/nixpkgs/nixos/tests/trafficserver.nix b/third_party/nixpkgs/nixos/tests/trafficserver.nix index 983ded4f17..e4557c6c50 100644 --- a/third_party/nixpkgs/nixos/tests/trafficserver.nix +++ b/third_party/nixpkgs/nixos/tests/trafficserver.nix @@ -172,6 +172,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { assert re.fullmatch(expected, out) is not None, "no matching logs" out = json.loads(ats.succeed(f"traffic_logstats -jf {access_log_path}")) + assert isinstance(out, dict) assert out["total"]["error.total"]["req"] == "0", "unexpected log stat" ''; }) diff --git a/third_party/nixpkgs/nixos/tests/vaultwarden.nix b/third_party/nixpkgs/nixos/tests/vaultwarden.nix index 87bea66334..c0e1d0585b 100644 --- a/third_party/nixpkgs/nixos/tests/vaultwarden.nix +++ b/third_party/nixpkgs/nixos/tests/vaultwarden.nix @@ -164,7 +164,7 @@ let with subtest("configure the cli"): client.succeed("bw --nointeraction config server http://server") - with subtest("can't login to nonexistant account"): + with subtest("can't login to nonexistent account"): client.fail( "bw --nointeraction --raw login ${userEmail} ${userPassword}" ) diff --git a/third_party/nixpkgs/nixos/tests/vscodium.nix b/third_party/nixpkgs/nixos/tests/vscodium.nix index ee884cc429..37bb649889 100644 --- a/third_party/nixpkgs/nixos/tests/vscodium.nix +++ b/third_party/nixpkgs/nixos/tests/vscodium.nix @@ -49,8 +49,8 @@ let start_all() machine.wait_for_unit('graphical.target') - machine.wait_until_succeeds('pgrep -x codium') + codium_running.wait() with codium_running: # Wait until vscodium is visible. "File" is in the menu bar. machine.wait_for_text('Get Started') diff --git a/third_party/nixpkgs/nixos/tests/web-apps/peertube.nix b/third_party/nixpkgs/nixos/tests/web-apps/peertube.nix index ecc45bff2e..0e5f39c08a 100644 --- a/third_party/nixpkgs/nixos/tests/web-apps/peertube.nix +++ b/third_party/nixpkgs/nixos/tests/web-apps/peertube.nix @@ -41,6 +41,9 @@ import ../make-test-python.nix ({pkgs, ...}: server = { pkgs, ... }: { environment = { etc = { + "peertube/secrets-peertube".text = '' + 063d9c60d519597acef26003d5ecc32729083965d09181ef3949200cbe5f09ee + ''; "peertube/password-posgressql-db".text = '' 0gUN0C1mgST6czvjZ8T9 ''; @@ -67,6 +70,10 @@ import ../make-test-python.nix ({pkgs, ...}: localDomain = "peertube.local"; enableWebHttps = false; + secrets = { + secretsFile = "/etc/peertube/secrets-peertube"; + }; + database = { host = "192.168.2.10"; name = "peertube_local"; diff --git a/third_party/nixpkgs/pkgs/applications/audio/bitwig-studio/bitwig-studio4.nix b/third_party/nixpkgs/pkgs/applications/audio/bitwig-studio/bitwig-studio4.nix index 8da04de579..d7215f9397 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/bitwig-studio/bitwig-studio4.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/bitwig-studio/bitwig-studio4.nix @@ -6,11 +6,11 @@ stdenv.mkDerivation rec { pname = "bitwig-studio"; - version = "4.4.3"; + version = "4.4.6"; src = fetchurl { url = "https://downloads.bitwig.com/stable/${version}/${pname}-${version}.deb"; - sha256 = "sha256-NP9cM1xIHblMdUFKIviPKDi6su6Nc3xsX2pnPeP7hdQ="; + sha256 = "sha256-VcK74JrVH81sgNeh1FDvCO1jtgkVeLpx5IqlXuzH27A="; }; nativeBuildInputs = [ dpkg makeWrapper wrapGAppsHook ]; diff --git a/third_party/nixpkgs/pkgs/applications/audio/faust/faust2.nix b/third_party/nixpkgs/pkgs/applications/audio/faust/faust2.nix index 19468b3af3..d1dd74a35d 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/faust/faust2.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/faust/faust2.nix @@ -20,13 +20,13 @@ with lib.strings; let - version = "2.41.1"; + version = "2.54.9"; src = fetchFromGitHub { owner = "grame-cncm"; repo = "faust"; rev = version; - sha256 = "sha256-x0nBWyILrNJijs7CIvRrgYG6vgB3UlxLj9i7E4cHr9I="; + sha256 = "sha256-7eSZUsZ0h0vWJIpZWXaS+SHV6N2i9nv6Gr6a9cuu4Fg="; fetchSubmodules = true; }; diff --git a/third_party/nixpkgs/pkgs/applications/audio/faust/faustlive.nix b/third_party/nixpkgs/pkgs/applications/audio/faust/faustlive.nix index 87f2920c20..b393041eeb 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/faust/faustlive.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/faust/faustlive.nix @@ -5,12 +5,12 @@ stdenv.mkDerivation rec { pname = "faustlive"; - version = "2.5.12"; + version = "2.5.13"; src = fetchFromGitHub { owner = "grame-cncm"; repo = "faustlive"; rev = version; - sha256 = "sha256-pq9zO4opCh9GEEtuQjrxKdNvOasDlcGGUsQD4je7Wyw="; + sha256 = "sha256-Tgb9UYj8mI4JsxA/PaTokm2NzQ14P8cOdKK8KCcnSIQ="; fetchSubmodules = true; }; diff --git a/third_party/nixpkgs/pkgs/applications/audio/faustPhysicalModeling/default.nix b/third_party/nixpkgs/pkgs/applications/audio/faustPhysicalModeling/default.nix index 720bc1613b..bc28a2238b 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/faustPhysicalModeling/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/faustPhysicalModeling/default.nix @@ -1,13 +1,13 @@ { stdenv, lib, fetchFromGitHub, faust2jaqt, faust2lv2 }: stdenv.mkDerivation rec { pname = "faustPhysicalModeling"; - version = "2.50.6"; + version = "2.54.9"; src = fetchFromGitHub { owner = "grame-cncm"; repo = "faust"; rev = version; - sha256 = "sha256-Q/vrm3WPsjkE3Xf/XEirsJPFXHNSW/Ve3Jbi/5nIrx8="; + sha256 = "sha256-1ZS7SVTWI1vNOGycZIDyKLgwfNooIGDa8Wmr6qfFSkU="; }; buildInputs = [ faust2jaqt faust2lv2 ]; diff --git a/third_party/nixpkgs/pkgs/applications/audio/furnace/default.nix b/third_party/nixpkgs/pkgs/applications/audio/furnace/default.nix index 9bae2b126f..31defdeb2f 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/furnace/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/furnace/default.nix @@ -21,14 +21,14 @@ stdenv.mkDerivation rec { pname = "furnace"; - version = "0.6pre1.5"; + version = "0.6pre2"; src = fetchFromGitHub { owner = "tildearrow"; repo = "furnace"; rev = "v${version}"; fetchSubmodules = true; - sha256 = "sha256-2Bl6CFZJkhdNxMZiJ392zjcVMu8BgyK58R8aE4ToskY="; + sha256 = "sha256-ydywnlZ6HEcTiBIB92yduCzPsOljvypP1KpCVjETzBc="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/audio/galaxy-buds-client/deps.nix b/third_party/nixpkgs/pkgs/applications/audio/galaxy-buds-client/deps.nix index 104e36a63e..d45dd12b8b 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/galaxy-buds-client/deps.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/galaxy-buds-client/deps.nix @@ -1,3 +1,6 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ (fetchNuGet { pname = "Avalonia"; version = "0.10.14"; sha256 = "0nn3xgkf7v47dwpnsxjg0b25ifqa4mbq02ja5rvnlc3q2k6k0fxv"; }) (fetchNuGet { pname = "Avalonia.Angle.Windows.Natives"; version = "2.1.0.2020091801"; sha256 = "04jm83cz7vkhhr6n2c9hya2k8i2462xbf6np4bidk55as0jdq43a"; }) diff --git a/third_party/nixpkgs/pkgs/applications/audio/gtkcord4/default.nix b/third_party/nixpkgs/pkgs/applications/audio/gtkcord4/default.nix index 99005937a1..5611407cfe 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/gtkcord4/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/gtkcord4/default.nix @@ -7,8 +7,10 @@ , graphene , gtk4 , lib +, libadwaita , pango , pkg-config +, withLibadwaita ? false , wrapGAppsHook4 }: @@ -36,8 +38,18 @@ buildGoModule rec { graphene gtk4 pango + ] ++ lib.optionals withLibadwaita [ + libadwaita ]; + tags = lib.optionals withLibadwaita [ "libadwaita" ]; + + postInstall = '' + install -D -m 444 -t $out/share/applications .nix/com.github.diamondburned.gtkcord4.desktop + install -D -m 444 internal/icons/svg/logo.svg $out/share/icons/hicolor/scalable/apps/gtkcord4.svg + install -D -m 444 internal/icons/png/logo.png $out/share/icons/hicolor/256x256/apps/gtkcord4.png + ''; + vendorHash = "sha256-QZSjSk1xu5ZcrNEra5TxnUVvlQWb5/h31fm5Nc7WMoI="; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/audio/librespot/default.nix b/third_party/nixpkgs/pkgs/applications/audio/librespot/default.nix index 5917739f24..f477b811d7 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/librespot/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/librespot/default.nix @@ -1,6 +1,17 @@ -{ lib, stdenv, fetchFromGitHub, rustPlatform, pkg-config, openssl, withRodio ? true -, withALSA ? true, alsa-lib ? null, withPulseAudio ? false, libpulseaudio ? null -, withPortAudio ? false, portaudio ? null }: +{ lib +, rustPlatform +, fetchFromGitHub +, pkg-config +, stdenv +, openssl +, withALSA ? true +, alsa-lib +, withPortAudio ? false +, portaudio +, withPulseAudio ? false +, libpulseaudio +, withRodio ? true +}: rustPlatform.buildRustPackage rec { pname = "librespot"; @@ -15,26 +26,26 @@ rustPlatform.buildRustPackage rec { cargoSha256 = "sha256-tbDlWP0sUIa0W9HhdYNOvo9cGeqFemclhA7quh7f/Rw="; - nativeBuildInputs = [ pkg-config ]; + nativeBuildInputs = [ pkg-config ] ++ lib.optionals stdenv.isDarwin [ + rustPlatform.bindgenHook + ]; - buildInputs = [ openssl ] ++ lib.optional withALSA alsa-lib - ++ lib.optional withPulseAudio libpulseaudio - ++ lib.optional withPortAudio portaudio; + buildInputs = [ openssl ] + ++ lib.optional withALSA alsa-lib + ++ lib.optional withPortAudio portaudio + ++ lib.optional withPulseAudio libpulseaudio; buildNoDefaultFeatures = true; buildFeatures = lib.optional withRodio "rodio-backend" ++ lib.optional withALSA "alsa-backend" - ++ lib.optional withPulseAudio "pulseaudio-backend" - ++ lib.optional withPortAudio "portaudio-backend"; - - doCheck = false; + ++ lib.optional withPortAudio "portaudio-backend" + ++ lib.optional withPulseAudio "pulseaudio-backend"; meta = with lib; { description = "Open Source Spotify client library and playback daemon"; homepage = "https://github.com/librespot-org/librespot"; + changelog = "https://github.com/librespot-org/librespot/blob/v${version}/CHANGELOG.md"; license = with licenses; [ mit ]; maintainers = with maintainers; [ bennofs ]; - platforms = platforms.unix; - broken = stdenv.isDarwin; # never built on Hydra https://hydra.nixos.org/job/nixpkgs/trunk/librespot.x86_64-darwin }; } diff --git a/third_party/nixpkgs/pkgs/applications/audio/lollypop/default.nix b/third_party/nixpkgs/pkgs/applications/audio/lollypop/default.nix index 0da23254aa..3ee546de22 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/lollypop/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/lollypop/default.nix @@ -95,9 +95,7 @@ python3.pkgs.buildPythonApplication rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; diff --git a/third_party/nixpkgs/pkgs/applications/audio/lsp-plugins/default.nix b/third_party/nixpkgs/pkgs/applications/audio/lsp-plugins/default.nix index f53f4c972a..be841577ad 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/lsp-plugins/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/lsp-plugins/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { pname = "lsp-plugins"; - version = "1.2.3"; + version = "1.2.4"; src = fetchurl { url = "https://github.com/sadko4u/${pname}/releases/download/${version}/${pname}-src-${version}.tar.gz"; - sha256 = "sha256-ej8t3xk29VLJMO1lvXuzUlD00al8TTkPLL8z62fmTys="; + sha256 = "sha256-GTrcUy10bN9Xj2I7uuGyP82c6NVpnQbXTI85H231yyo="; }; nativeBuildInputs = [ pkg-config php makeWrapper ]; diff --git a/third_party/nixpkgs/pkgs/applications/audio/mopidy/local.nix b/third_party/nixpkgs/pkgs/applications/audio/mopidy/local.nix index f32d9e3a34..717d61a92e 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/mopidy/local.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/mopidy/local.nix @@ -33,7 +33,6 @@ python3Packages.buildPythonApplication rec { ]; meta = with lib; { - broken = stdenv.isDarwin; homepage = "https://github.com/mopidy/mopidy-local"; description = "Mopidy extension for playing music from your local music archive"; license = licenses.asl20; diff --git a/third_party/nixpkgs/pkgs/applications/audio/mopidy/musicbox-webclient.nix b/third_party/nixpkgs/pkgs/applications/audio/mopidy/musicbox-webclient.nix index 1e2cb8d060..65a228b8fd 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/mopidy/musicbox-webclient.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/mopidy/musicbox-webclient.nix @@ -18,7 +18,6 @@ pythonPackages.buildPythonApplication rec { meta = with lib; { description = "Mopidy extension for playing music from SoundCloud"; license = licenses.mit; - broken = stdenv.isDarwin; maintainers = [ maintainers.spwhitt ]; }; } diff --git a/third_party/nixpkgs/pkgs/applications/audio/mp3val/default.nix b/third_party/nixpkgs/pkgs/applications/audio/mp3val/default.nix index dc1a308583..2435f0cecc 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/mp3val/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/mp3val/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { files' integrity. It can be useful for finding corrupted files (e.g. incompletely downloaded, truncated, containing garbage). MP3val is also able to fix most of the problems. Being a multiplatform application, - MP3val can be runned both under Windows and under Linux (or BSD). The most + MP3val can be run both under Windows and under Linux (or BSD). The most common MPEG audio file type is MPEG 1 Layer III (mp3), but MP3val supports also other MPEG versions and layers. The tool is also aware of the most common types of tags (ID3v1, ID3v2, APEv2). diff --git a/third_party/nixpkgs/pkgs/applications/audio/ocenaudio/default.nix b/third_party/nixpkgs/pkgs/applications/audio/ocenaudio/default.nix index 4077f5be21..73bee27980 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/ocenaudio/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/ocenaudio/default.nix @@ -11,11 +11,11 @@ stdenv.mkDerivation rec { pname = "ocenaudio"; - version = "3.11.15"; + version = "3.11.20"; src = fetchurl { url = "https://www.ocenaudio.com/downloads/index.php/ocenaudio_debian9_64.deb?version=${version}"; - sha256 = "sha256-l3Fv0gKKGYrbxpGHH6MXflK5fCrGoq3Qu+XkqFqMJJk="; + sha256 = "sha256-ifzth9qd2YX9WeF6QeXSWkMqRyTGBxPyTm5tkanPiFQ="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/audio/picard/default.nix b/third_party/nixpkgs/pkgs/applications/audio/picard/default.nix index 272f475d2f..4e7323b128 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/picard/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/picard/default.nix @@ -19,13 +19,13 @@ let in pythonPackages.buildPythonApplication rec { pname = "picard"; - version = "2.8.4"; + version = "2.8.5"; src = fetchFromGitHub { owner = "metabrainz"; repo = pname; - rev = "release-${version}"; - sha256 = "sha256-ygZkj7hZNm7XyqDEI7l49d36ZgCTwFiAuYZjlF9d5+8="; + rev = "refs/tags/release-${version}"; + sha256 = "sha256-ukqlAXGaqX89U77cM9Ux0RYquT31Ho8ri1Ue7S3+MwQ="; }; nativeBuildInputs = [ gettext qt5.wrapQtAppsHook qt5.qtbase ] diff --git a/third_party/nixpkgs/pkgs/applications/audio/pipecontrol/default.nix b/third_party/nixpkgs/pkgs/applications/audio/pipecontrol/default.nix index a2abab72ec..dacfd63164 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/pipecontrol/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/pipecontrol/default.nix @@ -16,13 +16,13 @@ stdenv.mkDerivation rec { pname = "pipecontrol"; - version = "0.2.4"; + version = "0.2.8"; src = fetchFromGitHub { owner = "portaloffreedom"; repo = pname; rev = "v${version}"; - sha256 = "sha256-F3faJMkvjAY6A5ieNpAxjk6BHPb6uCvYYfwrI9/Iskg="; + sha256 = "sha256-x33L/oLgJFiHp19FzinVuGT9k73wOhdSaTTemq52ZVg="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/audio/plexamp/default.nix b/third_party/nixpkgs/pkgs/applications/audio/plexamp/default.nix index ae9ab6229e..df008d1cfb 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/plexamp/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/plexamp/default.nix @@ -2,12 +2,12 @@ let pname = "plexamp"; - version = "4.5.2"; + version = "4.6.1"; src = fetchurl { url = "https://plexamp.plex.tv/plexamp.plex.tv/desktop/Plexamp-${version}.AppImage"; name="${pname}-${version}.AppImage"; - sha512 = "/0CW5S5n4xh9FF/Sfxl3H0bNCpbUfz4ik4ptVTIwvEcXw2NoKS5dLxFSTn9lfVZAV+UfzSqcrWH5HknN+o5wQw=="; + sha512 = "9wkhSDn7kvj6pqCawTJDBO8HfYe8eEYtAR1Bi9/fxiOBXRYUUHEZzSGLF9QoTVYMuGGHeX35c+QvnA2VsdsWCw=="; }; appimageContents = appimageTools.extractType2 { @@ -33,7 +33,7 @@ in appimageTools.wrapType2 { meta = with lib; { description = "A beautiful Plex music player for audiophiles, curators, and hipsters"; homepage = "https://plexamp.com/"; - changelog = "https://forums.plex.tv/t/plexamp-release-notes/221280/47"; + changelog = "https://forums.plex.tv/t/plexamp-release-notes/221280/48"; license = licenses.unfree; maintainers = with maintainers; [ killercup synthetica ]; platforms = [ "x86_64-linux" ]; diff --git a/third_party/nixpkgs/pkgs/applications/audio/praat/default.nix b/third_party/nixpkgs/pkgs/applications/audio/praat/default.nix index 9ef53b980b..fb8bd527aa 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/praat/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/praat/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "praat"; - version = "6.3.02"; + version = "6.3.03"; src = fetchFromGitHub { owner = "praat"; repo = "praat"; rev = "v${version}"; - sha256 = "sha256-sn/GWCw1bxtFjUUKkrPZVOe5qRQ5ATyII52CPHmlB3g="; + sha256 = "sha256-Fb16sx+LVoXuiFASeiaYUMoNgZJXqKTBrUHFd2YXEJ0="; }; configurePhase = '' diff --git a/third_party/nixpkgs/pkgs/applications/audio/ptcollab/default.nix b/third_party/nixpkgs/pkgs/applications/audio/ptcollab/default.nix index 842b8f0aa0..9f35ea4c4e 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/ptcollab/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/ptcollab/default.nix @@ -38,9 +38,7 @@ mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/audio/qjackctl/default.nix b/third_party/nixpkgs/pkgs/applications/audio/qjackctl/default.nix index 2406ba24a8..a9cc966af2 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/qjackctl/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/qjackctl/default.nix @@ -5,7 +5,7 @@ }: mkDerivation rec { - version = "0.9.7"; + version = "0.9.8"; pname = "qjackctl"; # some dependencies such as killall have to be installed additionally @@ -14,7 +14,7 @@ mkDerivation rec { owner = "rncbc"; repo = "qjackctl"; rev = "${pname}_${lib.replaceStrings ["."] ["_"] version}"; - sha256 = "sha256-PchW9cM5qEP51G9RXUZ3j/AvKqTkgNiw3esqSQqsy0M="; + sha256 = "sha256-GEnxxYul4qir/92hGq4L+29dnpy1MxHonM1llkzSLPw="; }; buildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/audio/radioboat/default.nix b/third_party/nixpkgs/pkgs/applications/audio/radioboat/default.nix index bd73237f79..729a56c0f7 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/radioboat/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/radioboat/default.nix @@ -42,7 +42,7 @@ buildGoModule rec { ''; passthru = { - updateScript = nix-update-script { attrPath = pname; }; + updateScript = nix-update-script { }; tests.version = testers.testVersion { package = radioboat; command = "radioboat version"; diff --git a/third_party/nixpkgs/pkgs/applications/audio/sayonara/default.nix b/third_party/nixpkgs/pkgs/applications/audio/sayonara/default.nix index 12a7ab0325..d578a4f307 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/sayonara/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/sayonara/default.nix @@ -63,9 +63,7 @@ mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/audio/sidplayfp/default.nix b/third_party/nixpkgs/pkgs/applications/audio/sidplayfp/default.nix index 95a40b1a99..7abe0e15de 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/sidplayfp/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/sidplayfp/default.nix @@ -39,9 +39,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/audio/snapcast/default.nix b/third_party/nixpkgs/pkgs/applications/audio/snapcast/default.nix index 513c2bb569..558948ab4a 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/snapcast/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/snapcast/default.nix @@ -1,5 +1,6 @@ -{ stdenv, lib, fetchFromGitHub, cmake, pkg-config, darwin +{ stdenv, lib, fetchFromGitHub, cmake, pkg-config , alsa-lib, asio, avahi, boost17x, flac, libogg, libvorbis, soxr +, IOKit, AudioToolbox , aixlog, popl , pulseaudioSupport ? false, libpulseaudio , nixosTests }: @@ -26,7 +27,7 @@ stdenv.mkDerivation rec { aixlog popl soxr ] ++ lib.optional pulseaudioSupport libpulseaudio ++ lib.optional stdenv.isLinux alsa-lib - ++ lib.optionals stdenv.isDarwin [darwin.apple_sdk.frameworks.IOKit darwin.apple_sdk.frameworks.AudioToolbox]; + ++ lib.optionals stdenv.isDarwin [ IOKit AudioToolbox ]; TARGET=lib.optionalString stdenv.isDarwin "MACOS"; @@ -45,7 +46,5 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ fpletz ]; platforms = platforms.linux ++ platforms.darwin; license = licenses.gpl3Plus; - # never built on x86_64-darwin since first introduction in nixpkgs - broken = stdenv.isDarwin && stdenv.isx86_64; }; } diff --git a/third_party/nixpkgs/pkgs/applications/audio/spot/default.nix b/third_party/nixpkgs/pkgs/applications/audio/spot/default.nix index 31724eff9d..568898d5cb 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/spot/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/spot/default.nix @@ -72,9 +72,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/audio/sptlrx/default.nix b/third_party/nixpkgs/pkgs/applications/audio/sptlrx/default.nix index 7b31325164..aa0d85a6cb 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/sptlrx/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/sptlrx/default.nix @@ -16,7 +16,7 @@ buildGoModule rec { ldflags = [ "-s" "-w" ]; passthru = { - updateScript = nix-update-script { attrPath = pname; }; + updateScript = nix-update-script { }; tests.version = testers.testVersion { package = sptlrx; version = "v${version}"; # needed because testVersion uses grep -Fw diff --git a/third_party/nixpkgs/pkgs/applications/audio/squeezelite/default.nix b/third_party/nixpkgs/pkgs/applications/audio/squeezelite/default.nix index dad4402e2d..19b72d1c37 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/squeezelite/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/squeezelite/default.nix @@ -34,13 +34,13 @@ stdenv.mkDerivation { pname = binName; # versions are specified in `squeezelite.h` # see https://github.com/ralph-irving/squeezelite/issues/29 - version = "1.9.9.1414"; + version = "1.9.9.1419"; src = fetchFromGitHub { owner = "ralph-irving"; repo = "squeezelite"; - rev = "dbe69eb8aa88f644cfb46541d6cef72fa666570d"; - hash = "sha256-BN6eBHMMecucfHwzmho3xi1l2O3YnYcBUE321Rl6xrc="; + rev = "226efa300c4cf037e8486bad635e9deb3104636f"; + hash = "sha256-ZZWliw1prFbBZMFp0QmXg6MKuHPNuFh2lFxQ8bbuWAM="; }; buildInputs = [ flac libmad libvorbis mpg123 ] diff --git a/third_party/nixpkgs/pkgs/applications/audio/tauon/default.nix b/third_party/nixpkgs/pkgs/applications/audio/tauon/default.nix index 777f7c171c..d6e56c9812 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/tauon/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/tauon/default.nix @@ -25,13 +25,13 @@ stdenv.mkDerivation rec { pname = "tauon"; - version = "7.4.6"; + version = "7.4.7"; src = fetchFromGitHub { owner = "Taiko2k"; repo = "TauonMusicBox"; rev = "v${version}"; - sha256 = "sha256-G3DDr2ON35ctjPkRMJDjnfDHMHMhR3tlTgJ65DXvzwk="; + sha256 = "sha256-WUHMXsbnNaDlV/5bCOPMadJKWoF5i2UlFf9fcX6GCZ0="; }; postUnpack = '' diff --git a/third_party/nixpkgs/pkgs/applications/audio/tuner/default.nix b/third_party/nixpkgs/pkgs/applications/audio/tuner/default.nix new file mode 100644 index 0000000000..0f4db5af20 --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/audio/tuner/default.nix @@ -0,0 +1,68 @@ +{ stdenv +, lib +, fetchFromGitHub +, pkg-config +, meson +, ninja +, vala +, glib +, itstool +, wrapGAppsHook +, desktop-file-utils +, libsoup +, json-glib +, geoclue2 +, geocode-glib +, libgee +, gtk3 +, pantheon +, gst_all_1 +}: + +stdenv.mkDerivation rec { + pname = "tuner"; + version = "1.5.1"; + + src = fetchFromGitHub { + owner = "louis77"; + repo = pname; + rev = version; + sha256 = "sha256-tG1AMEqHcp4jHNgWDy9fS2FtlxFTlpMD5MVbepIY+GY="; + }; + + nativeBuildInputs = [ + pkg-config + meson + ninja + vala + glib + itstool + wrapGAppsHook + desktop-file-utils + ]; + + buildInputs = [ + libsoup + json-glib + geoclue2 + geocode-glib + libgee + glib + gtk3 + pantheon.granite + gst_all_1.gstreamer + gst_all_1.gst-plugins-base + gst_all_1.gst-plugins-bad + gst_all_1.gst-plugins-good + gst_all_1.gst-plugins-ugly + ]; + + meta = with lib; { + homepage = "https://github.com/louis77/tuner"; + description = "An app to discover and play internet radio stations"; + license = licenses.gpl3Plus; + platforms = platforms.linux; + mainProgram = "com.github.louis77.tuner"; + maintainers = [ maintainers.abbe ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/audio/vcv-rack/default.nix b/third_party/nixpkgs/pkgs/applications/audio/vcv-rack/default.nix index b4a5c98d8b..4c7df0f02d 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/vcv-rack/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/vcv-rack/default.nix @@ -115,7 +115,7 @@ let in stdenv.mkDerivation rec { pname = "VCV-Rack"; - version = "2.2.0"; + version = "2.2.1"; desktopItems = [ (makeDesktopItem { @@ -135,7 +135,7 @@ stdenv.mkDerivation rec { owner = "VCVRack"; repo = "Rack"; rev = "v${version}"; - sha256 = "1ag1syjxdzxx13pdcfga9ksc6a5hw9bcdfhbry8qd2pxs9lmv2q6"; + sha256 = "079alr6y0101k92v5lrnycljcbifh0hsvklbf4w5ax2zrxnyplq8"; }; patches = [ @@ -203,11 +203,9 @@ stdenv.mkDerivation rec { zstd ]; - makeFlags = [ - ( if stdenv.hostPlatform.system == "aarch64-linux" - then "MACHINE=arm64-linux" - else "MACHINE=${stdenv.hostPlatform.config}" - ) + makeFlags = lib.optionals (stdenv.buildPlatform != stdenv.hostPlatform) [ + "CROSS_COMPILE=${stdenv.cc.targetPrefix}" + ] ++ [ "all" "plugins" ]; diff --git a/third_party/nixpkgs/pkgs/applications/audio/vcv-rack/rack-minimize-vendoring.patch b/third_party/nixpkgs/pkgs/applications/audio/vcv-rack/rack-minimize-vendoring.patch index f61fd75260..58f1b1f16f 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/vcv-rack/rack-minimize-vendoring.patch +++ b/third_party/nixpkgs/pkgs/applications/audio/vcv-rack/rack-minimize-vendoring.patch @@ -1,5 +1,5 @@ diff --git a/Makefile b/Makefile -index e1be07d1..309b3b0b 100644 +index fc7c3af1..c3672c6a 100644 --- a/Makefile +++ b/Makefile @@ -34,7 +34,7 @@ ifdef ARCH_LIN diff --git a/third_party/nixpkgs/pkgs/applications/audio/vocal/default.nix b/third_party/nixpkgs/pkgs/applications/audio/vocal/default.nix index 0c80dda703..e5ab69c14b 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/vocal/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/vocal/default.nix @@ -80,9 +80,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/audio/x42-plugins/default.nix b/third_party/nixpkgs/pkgs/applications/audio/x42-plugins/default.nix index a161394615..e4cbfacedc 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/x42-plugins/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/x42-plugins/default.nix @@ -3,12 +3,12 @@ , libGLU, lv2, gtk2, cairo, pango, fftwFloat, zita-convolver }: stdenv.mkDerivation rec { - version = "20220923"; + version = "20221119"; pname = "x42-plugins"; src = fetchurl { url = "https://gareus.org/misc/x42-plugins/${pname}-${version}.tar.xz"; - sha256 = "sha256-9Y9up5Ziipm6ums1wESfcADKgMwas2SESgGPn74RTt4="; + sha256 = "sha256-q5RiEzV2QKNWXP8KB6nQjyNCTftiYgeowcbD709PEIk="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/applications/audio/zrythm/default.nix b/third_party/nixpkgs/pkgs/applications/audio/zrythm/default.nix index 9500c63a7a..7b92626d5b 100644 --- a/third_party/nixpkgs/pkgs/applications/audio/zrythm/default.nix +++ b/third_party/nixpkgs/pkgs/applications/audio/zrythm/default.nix @@ -160,6 +160,7 @@ stdenv.mkDerivation rec { preFixup = '' gappsWrapperArgs+=( --prefix GSETTINGS_SCHEMA_DIR : "$out/share/gsettings-schemas/${pname}-${version}/glib-2.0/schemas/" + --prefix XDG_DATA_DIRS : "$XDG_ICON_DIRS" ) ''; diff --git a/third_party/nixpkgs/pkgs/applications/blockchains/bisq-desktop/default.nix b/third_party/nixpkgs/pkgs/applications/blockchains/bisq-desktop/default.nix index 05542ef4c2..0da9675d25 100644 --- a/third_party/nixpkgs/pkgs/applications/blockchains/bisq-desktop/default.nix +++ b/third_party/nixpkgs/pkgs/applications/blockchains/bisq-desktop/default.nix @@ -34,11 +34,11 @@ let in stdenv.mkDerivation rec { pname = "bisq-desktop"; - version = "1.9.6"; + version = "1.9.8"; src = fetchurl { url = "https://github.com/bisq-network/bisq/releases/download/v${version}/Bisq-64bit-${version}.deb"; - sha256 = "02j6n693lhfn9x8kaz253xm76zzsdz8h10rkyxnlqiwwbn1wnmsa"; + sha256 = "1hwfchwqvflfzpv8n9wvj567a68fa4bch0hi8vk4pzmwxsx4z7g1"; }; nativeBuildInputs = [ makeWrapper copyDesktopItems imagemagick dpkg zip xz ]; diff --git a/third_party/nixpkgs/pkgs/applications/blockchains/btcpayserver/default.nix b/third_party/nixpkgs/pkgs/applications/blockchains/btcpayserver/default.nix index a2ce1b90d2..17d6704644 100644 --- a/third_party/nixpkgs/pkgs/applications/blockchains/btcpayserver/default.nix +++ b/third_party/nixpkgs/pkgs/applications/blockchains/btcpayserver/default.nix @@ -6,13 +6,13 @@ buildDotnetModule rec { pname = "btcpayserver"; - version = "1.7.1"; + version = "1.7.2"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-6E8TJ1NgWlLTegDQ4UcCQpAAQibbefg5x7qhSrSKAgc="; + sha256 = "sha256-EZ8gfpTBmTB/lGtexZYbD9x1F7rFXIEaEhhwS6gOEV4="; }; projectFile = "BTCPayServer/BTCPayServer.csproj"; diff --git a/third_party/nixpkgs/pkgs/applications/blockchains/btcpayserver/deps.nix b/third_party/nixpkgs/pkgs/applications/blockchains/btcpayserver/deps.nix index 3cda0eac71..29bf9844b1 100644 --- a/third_party/nixpkgs/pkgs/applications/blockchains/btcpayserver/deps.nix +++ b/third_party/nixpkgs/pkgs/applications/blockchains/btcpayserver/deps.nix @@ -1,1892 +1,398 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ - (fetchNuGet { - pname = "AngleSharp.Css"; - version = "0.14.2"; - sha256 = "1d34a8ab5dri4wlw07jvk7b1z0d0zizwihwpdfva3sxhb4279ahd"; - }) - (fetchNuGet { - pname = "AngleSharp"; - version = "0.14.0"; - sha256 = "1zgwhh1fp2mmaplvpgm86rpmslix3wqfxf0d3hxx1gxwfgr6wxm6"; - }) - (fetchNuGet { - pname = "AWSSDK.Core"; - version = "3.3.104.14"; - sha256 = "157694kb63z1szbsv861515fvjv7amrjrfmgbm3idpyw31afk650"; - }) - (fetchNuGet { - pname = "AWSSDK.S3"; - version = "3.3.110.10"; - sha256 = "1lf1hfbx792dpa1hxgn0a0jrrvldd16hgbxx229dk2qcz5qlnc38"; - }) - (fetchNuGet { - pname = "BIP78.Sender"; - version = "0.2.2"; - sha256 = "12pm2s35c0qzc06099q2z1pxwq94rq85n74yz8fs8gwvm2ksgp4p"; - }) - (fetchNuGet { - pname = "BTCPayServer.Hwi"; - version = "2.0.2"; - sha256 = "0lh3n1qncqs4kbrmx65xs271f0d9c7irrs9qnsa9q51cbbqbljh9"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.All"; - version = "1.4.9"; - sha256 = "0r9ssz00d0zbbszs1ypc9jvbwg5myh9jmw46wvzk0jhp5xfz5mip"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.Charge"; - version = "1.3.14"; - sha256 = "1frhj5jmncsdcb1x5jy733l40bqifdwirmq6mjdn3596fmgjvh9b"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.CLightning"; - version = "1.3.16"; - sha256 = "0nh1fcjpkl6l2par60p0w7nwc45za28iagmdsq6czz68kpvfx83c"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.Common"; - version = "1.3.15"; - sha256 = "1axmdn6qdzxljdvidw8s68sfgy5ykmxv0nkzcdsgdmhisahaz2pa"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.Common"; - version = "1.3.7"; - sha256 = "1hsn51zx34fswjph1dgplwj92045d4ymallryjxbm5gl1wgnvqvz"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.Eclair"; - version = "1.3.14"; - sha256 = "1ld5diahj75jbnqmvvsc0h65sbd4i73k7sik325yw4gvz4jmw2ih"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.LNBank"; - version = "1.3.16"; - sha256 = "0nq36jg0qfj93djk5b9i42v8gm2zqkf8a2ddb69z52gsg8ixvcm6"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.LND"; - version = "1.4.7"; - sha256 = "144wlnlvkmn1hrl7kwsqfvlla3lknd599rmp6zf1nv0n4jsj15l4"; - }) - (fetchNuGet { - pname = "BTCPayServer.Lightning.LNDhub"; - version = "1.0.10"; - sha256 = "12c5gmd62vik0ar786jlhzf0gid4smi5ysl12mxpx1i0dndgapbh"; 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}) + (fetchNuGet { pname = "System.Text.Encodings.Web"; version = "6.0.0"; sha256 = "06n9ql3fmhpjl32g3492sj181zjml5dlcc5l76xq2h38c4f87sai"; }) + (fetchNuGet { pname = "System.Text.Json"; version = "6.0.0"; sha256 = "1si2my1g0q0qv1hiqnji4xh9wd05qavxnzj9dwgs23iqvgjky0gl"; }) + (fetchNuGet { pname = "System.Text.Json"; version = "6.0.2"; sha256 = "1lz6gx1r4if8sbx6yp9h0mi0g9ffr40x0cg518l0z2aiqgil3fk0"; }) + (fetchNuGet { pname = "System.Text.RegularExpressions"; version = "4.3.0"; sha256 = "1bgq51k7fwld0njylfn7qc5fmwrk2137gdq7djqdsw347paa9c2l"; }) + (fetchNuGet { pname = "System.Threading"; version = "4.0.11"; sha256 = "19x946h926bzvbsgj28csn46gak2crv2skpwsx80hbgazmkgb1ls"; }) + (fetchNuGet { pname = "System.Threading"; version = "4.3.0"; sha256 = "0rw9wfamvhayp5zh3j7p1yfmx9b5khbf4q50d8k5rk993rskfd34"; }) + (fetchNuGet { pname = "System.Threading.Channels"; version = "4.5.0"; sha256 = "0n6z3wjia7h2a5vl727p97riydnb6jhhkb1pdcnizza02dwkz0nz"; }) + (fetchNuGet { pname = "System.Threading.Channels"; 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sha256 = "1nx773nsx6z5whv8kaa1wjh037id2f1cxhb69pvgv12hd2b6qs56"; }) + (fetchNuGet { pname = "System.Windows.Extensions"; version = "6.0.0"; sha256 = "1wy9pq9vn1bqg5qnv53iqrbx04yzdmjw4x5yyi09y3459vaa1sip"; }) + (fetchNuGet { pname = "System.Xml.ReaderWriter"; version = "4.3.0"; sha256 = "0c47yllxifzmh8gq6rq6l36zzvw4kjvlszkqa9wq3fr59n0hl3s1"; }) + (fetchNuGet { pname = "System.Xml.XDocument"; version = "4.3.0"; sha256 = "08h8fm4l77n0nd4i4fk2386y809bfbwqb7ih9d7564ifcxr5ssxd"; }) + (fetchNuGet { pname = "TwentyTwenty.Storage"; version = "2.12.1"; sha256 = "0m41dxzc3hh0f4j1k4q915pvcq6zr0hv1pj6b3sayrn8vjhk64qb"; }) + (fetchNuGet { pname = "TwentyTwenty.Storage.Amazon"; version = "2.12.1"; sha256 = "03nrkvhki35w1rqx94s97rwxl0qwqlczyiimhrkc72vjppn5p6ph"; }) + (fetchNuGet { pname = "TwentyTwenty.Storage.Azure"; version = "2.12.1"; sha256 = "10q7gpr8kmgzmxrzj3paqlnw4d8li8scwpxkzs11ildscfp6hvlv"; }) + (fetchNuGet { pname = "TwentyTwenty.Storage.Google"; version = "2.12.1"; sha256 = "0d8s7p9brp03h9dpv3wxnqg0xsm7d9p4k6dpxpb9jak535khxzhp"; }) + (fetchNuGet { pname = "TwentyTwenty.Storage.Local"; version = "2.12.1"; sha256 = "1zmjqwd1v3z78ab4vdmaadh94465k1qgpv7ylv8x3sdx4z78yjm8"; }) + (fetchNuGet { pname = "WindowsAzure.Storage"; version = "9.3.3"; sha256 = "14b0b0nj85yvyn0h8ghr3kj6di2nkbzjxc2q98f1wcr0151xvdfx"; }) + (fetchNuGet { pname = "YamlDotNet"; version = "8.0.0"; sha256 = "09hr1jimmfhcpk97p963y94h2k5p7wzcj4mpwqpdnwzbyrp2flpm"; }) ] diff --git a/third_party/nixpkgs/pkgs/applications/blockchains/erigon/default.nix b/third_party/nixpkgs/pkgs/applications/blockchains/erigon/default.nix index f4e5b1de65..5e1d0db827 100644 --- a/third_party/nixpkgs/pkgs/applications/blockchains/erigon/default.nix +++ b/third_party/nixpkgs/pkgs/applications/blockchains/erigon/default.nix @@ -29,6 +29,8 @@ buildGoModule rec { "cmd/rlpdump" ]; + passthru.updateScript = ./update.sh; + meta = with lib; { homepage = "https://github.com/ledgerwatch/erigon/"; description = "Ethereum node implementation focused on scalability and modularity"; diff --git a/third_party/nixpkgs/pkgs/applications/blockchains/fulcrum/default.nix b/third_party/nixpkgs/pkgs/applications/blockchains/fulcrum/default.nix index 02efa6f269..28571a57e1 100644 --- a/third_party/nixpkgs/pkgs/applications/blockchains/fulcrum/default.nix +++ b/third_party/nixpkgs/pkgs/applications/blockchains/fulcrum/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "fulcrum"; - version = "1.8.2"; + version = "1.9.0"; src = fetchFromGitHub { owner = "cculianu"; repo = "Fulcrum"; rev = "v${version}"; - sha256 = "sha256-sX9GeY+c/mcsAWApQ0E5LwoXZgWUC4w7YY8/PEzMhl8="; + sha256 = "sha256-HAA5YRShLzxVP9aIP1RdDH09cZqjiZhZOxxc2EVGvx8="; }; nativeBuildInputs = [ pkg-config qmake ]; diff --git a/third_party/nixpkgs/pkgs/applications/blockchains/haven-cli/default.nix b/third_party/nixpkgs/pkgs/applications/blockchains/haven-cli/default.nix index 2b314e7b52..a5e34bc904 100644 --- a/third_party/nixpkgs/pkgs/applications/blockchains/haven-cli/default.nix +++ b/third_party/nixpkgs/pkgs/applications/blockchains/haven-cli/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "haven-cli"; - version = "2.2.3"; + version = "3.0.0"; src = fetchFromGitHub { owner = "haven-protocol-org"; repo = "haven-main"; rev = "v${version}"; - sha256 = "sha256-nBVLNT0jWIewr6MPDGwDqXoVtyFLyls1IEQraVoWDQ4="; + sha256 = "sha256-ZQiSh1pB0njIAyJFPIsgoqNuhvMGRJ2NIZaUoB1fN3E="; fetchSubmodules = true; }; @@ -29,6 +29,8 @@ stdenv.mkDerivation rec { rm -r external/{miniupnp,randomx,rapidjson,unbound} # export patched source for haven-gui cp -r . $source + # fix build on aarch64-darwin + substituteInPlace CMakeLists.txt --replace "-march=x86-64" "" ''; nativeBuildInputs = [ cmake pkg-config ]; @@ -59,7 +61,5 @@ stdenv.mkDerivation rec { license = licenses.bsd3; platforms = platforms.all; maintainers = with maintainers; [ kim0 ]; - # never built on aarch64-darwin since first introduction in nixpkgs - broken = stdenv.isDarwin && stdenv.isAarch64; }; } diff --git a/third_party/nixpkgs/pkgs/applications/blockchains/ledger-live-desktop/default.nix b/third_party/nixpkgs/pkgs/applications/blockchains/ledger-live-desktop/default.nix index 86815bd55b..cd9ec2a80e 100644 --- a/third_party/nixpkgs/pkgs/applications/blockchains/ledger-live-desktop/default.nix +++ b/third_party/nixpkgs/pkgs/applications/blockchains/ledger-live-desktop/default.nix @@ -2,11 +2,11 @@ let pname = "ledger-live-desktop"; - version = "2.50.0"; + version = "2.51.0"; src = fetchurl { url = "https://download.live.ledger.com/${pname}-${version}-linux-x86_64.AppImage"; - hash = "sha256-Xh0UwE2rgFmUI4mx/PHqhRkgw51/CuNPxrsxI9al2E8="; + hash = "sha256-qpgzGJsj7hrrK2i+xP0T+hcw7WMlGBILbHVJBHD5duo="; }; appimageContents = appimageTools.extractType2 { diff --git a/third_party/nixpkgs/pkgs/applications/blockchains/lndhub-go/default.nix b/third_party/nixpkgs/pkgs/applications/blockchains/lndhub-go/default.nix index 74f0d4f9f7..8cb8ed147a 100644 --- a/third_party/nixpkgs/pkgs/applications/blockchains/lndhub-go/default.nix +++ b/third_party/nixpkgs/pkgs/applications/blockchains/lndhub-go/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "lndhub-go"; - version = "0.11.0"; + version = "0.12.0"; src = fetchFromGitHub { owner = "getAlby"; repo = "lndhub.go"; rev = "${version}"; - sha256 = "sha256-UGrIj/0ysU4i6PQVkuIeyGdKNCMa9LxikaIPhSKGvaQ="; + sha256 = "sha256-bwwypqaqlO+T/8ppKIHqGSzVerhQVl7YHrORyrpaa2w="; }; vendorSha256 = "sha256-AiRbUSgMoU8nTzis/7H9HRW2/xZxXFf39JipRbukeiA="; diff --git a/third_party/nixpkgs/pkgs/applications/blockchains/nbxplorer/default.nix b/third_party/nixpkgs/pkgs/applications/blockchains/nbxplorer/default.nix index f4f0820473..5e4b0afd38 100644 --- a/third_party/nixpkgs/pkgs/applications/blockchains/nbxplorer/default.nix +++ b/third_party/nixpkgs/pkgs/applications/blockchains/nbxplorer/default.nix @@ -6,13 +6,13 @@ buildDotnetModule rec { pname = "nbxplorer"; - version = "2.3.49"; + version = "2.3.54"; src = fetchFromGitHub { owner = "dgarage"; repo = "NBXplorer"; rev = "v${version}"; - sha256 = "sha256-ErAdFY65EYY988+xqSd6v57NbFeOE3Yt5mvn6C0TuRE="; + sha256 = "sha256-WINanMGAlZioD6XP0xK6H+KTlF/NRMAmhylmRV6y2uI="; }; projectFile = "NBXplorer/NBXplorer.csproj"; diff --git a/third_party/nixpkgs/pkgs/applications/blockchains/nbxplorer/deps.nix b/third_party/nixpkgs/pkgs/applications/blockchains/nbxplorer/deps.nix index a646fd1e83..62aeee0f63 100644 --- a/third_party/nixpkgs/pkgs/applications/blockchains/nbxplorer/deps.nix +++ b/third_party/nixpkgs/pkgs/applications/blockchains/nbxplorer/deps.nix @@ -1,1062 +1,219 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ - (fetchNuGet { - pname = "Dapper"; - version = "2.0.123"; - sha256 = "15hxrchfgiqnmgf8fqhrf4pb4c8l9igg5qnkw9yk3rkagcqfkk91"; - }) - (fetchNuGet { - pname = "DBTrie"; - version = "1.0.39"; - sha256 = "0kbvl3kf73hrh1w2n3d2wshlxpqsv1pwydhwv2wxigmvs70fn1xp"; - }) - (fetchNuGet { - pname = "Microsoft.AspNetCore.JsonPatch"; - version = "6.0.9"; - sha256 = "0hvz79sas53949hx5sc9r1h0sxnvdggscqyp7h7qk0i27p3a9rqv"; - }) - (fetchNuGet { - pname = "Microsoft.AspNetCore.Mvc.NewtonsoftJson"; - version = "6.0.9"; - sha256 = "13vnkradd2hd7lq4jl0ikz2s965wk49snmjcf4722za3azil6sr5"; - }) - (fetchNuGet { - pname = "Microsoft.Azure.Amqp"; - version = "2.4.9"; - sha256 = "15kvklhfl17713kwin8p71lcxq2jx87bk1d8gsl597z3w6l4cqma"; - }) - (fetchNuGet { - pname = "Microsoft.Azure.ServiceBus"; - version = "4.2.1"; - sha256 = "0akxqds078p7djd5g95i9dh4wrlfarabkq2ybn614cqdgl4z0is5"; - }) - (fetchNuGet { - pname = "Microsoft.Azure.Services.AppAuthentication"; - version = "1.0.3"; - sha256 = "0as64agcsilwgbvwx7iw3abdxyp9cbfpczbagjz49mqmmgnqp899"; - }) - (fetchNuGet { - pname = "Microsoft.CodeCoverage"; - version = "17.3.2"; - sha256 = "1f05l2vm8inlwhk36lfbyszjlcnvdd2qw2832npaah0dldn6dz00"; - }) - (fetchNuGet { - pname = "Microsoft.CSharp"; - version = "4.0.1"; - sha256 = "0zxc0apx1gcx361jlq8smc9pfdgmyjh6hpka8dypc9w23nlsh6yj"; - }) - (fetchNuGet { - pname = "Microsoft.CSharp"; - version = "4.3.0"; - sha256 = "0gw297dgkh0al1zxvgvncqs0j15lsna9l1wpqas4rflmys440xvb"; - }) - (fetchNuGet { - pname = "Microsoft.CSharp"; - version = "4.7.0"; - sha256 = "0gd67zlw554j098kabg887b5a6pq9kzavpa3jjy5w53ccjzjfy8j"; - }) - (fetchNuGet { - pname = "Microsoft.Extensions.Configuration.Abstractions"; - version = "6.0.0"; - sha256 = "0w6wwxv12nbc3sghvr68847wc9skkdgsicrz3fx4chgng1i3xy0j"; - }) - (fetchNuGet { - pname = "Microsoft.Extensions.Configuration.EnvironmentVariables"; - version = "6.0.0"; - sha256 = "19w2vxliz1xangbach3hkx72x2pxqhc9n9c3kc3l8mhicl8w6vdl"; - }) - (fetchNuGet { - pname = "Microsoft.Extensions.Configuration.FileExtensions"; - version = "6.0.0"; - sha256 = "02nna984iwnyyz4jjh9vs405nlj0yk1g5vz4v2x30z2c89mx5f9w"; 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}) + (fetchNuGet { pname = "System.Threading.Thread"; version = "4.3.0"; sha256 = "0y2xiwdfcph7znm2ysxanrhbqqss6a3shi1z3c779pj2s523mjx4"; }) + (fetchNuGet { pname = "System.Threading.ThreadPool"; version = "4.3.0"; sha256 = "027s1f4sbx0y1xqw2irqn6x161lzj8qwvnh2gn78ciiczdv10vf1"; }) + (fetchNuGet { pname = "System.Threading.Timer"; version = "4.3.0"; sha256 = "1nx773nsx6z5whv8kaa1wjh037id2f1cxhb69pvgv12hd2b6qs56"; }) + (fetchNuGet { pname = "System.Xml.ReaderWriter"; version = "4.0.11"; sha256 = "0c6ky1jk5ada9m94wcadih98l6k1fvf6vi7vhn1msjixaha419l5"; }) + (fetchNuGet { pname = "System.Xml.ReaderWriter"; version = "4.3.0"; sha256 = "0c47yllxifzmh8gq6rq6l36zzvw4kjvlszkqa9wq3fr59n0hl3s1"; }) + (fetchNuGet { pname = "System.Xml.XDocument"; version = "4.3.0"; sha256 = "08h8fm4l77n0nd4i4fk2386y809bfbwqb7ih9d7564ifcxr5ssxd"; }) + (fetchNuGet { pname = "System.Xml.XmlDocument"; version = "4.0.1"; sha256 = "0ihsnkvyc76r4dcky7v3ansnbyqjzkbyyia0ir5zvqirzan0bnl1"; }) + (fetchNuGet { pname = "System.Xml.XmlDocument"; version = "4.3.0"; sha256 = "0bmz1l06dihx52jxjr22dyv5mxv6pj4852lx68grjm7bivhrbfwi"; }) + (fetchNuGet { pname = "System.Xml.XmlSerializer"; version = "4.0.11"; sha256 = "01nzc3gdslw90qfykq4qzr2mdnqxjl4sj0wp3fixiwdmlmvpib5z"; }) + (fetchNuGet { pname = "System.Xml.XmlSerializer"; version = "4.3.0"; sha256 = "07pa4sx196vxkgl3csvdmw94nydlsm9ir38xxcs84qjn8cycd912"; }) ] diff --git a/third_party/nixpkgs/pkgs/applications/blockchains/particl-core/default.nix b/third_party/nixpkgs/pkgs/applications/blockchains/particl-core/default.nix index fb9fc3dc4b..c55d04b03a 100644 --- a/third_party/nixpkgs/pkgs/applications/blockchains/particl-core/default.nix +++ b/third_party/nixpkgs/pkgs/applications/blockchains/particl-core/default.nix @@ -18,13 +18,13 @@ with lib; stdenv.mkDerivation rec { pname = "particl-core"; - version = "0.19.2.20"; + version = "23.0.3.0"; src = fetchFromGitHub { owner = "particl"; repo = "particl-core"; rev = "v${version}"; - sha256 = "sha256-gvpqOCJTUIhzrNbOaYFftx/G/dO0BCfHAMUrBk6pczc="; + sha256 = "sha256-jrIsErKeHP9CMUWsrD42RmfmApP7J091OLA5JNY0fe0="; }; nativeBuildInputs = [ pkg-config autoreconfHook ]; @@ -43,7 +43,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; meta = { - broken = (stdenv.isLinux && stdenv.isAarch64) || stdenv.isDarwin; + broken = (stdenv.isLinux && stdenv.isAarch64); description = "Privacy-Focused Marketplace & Decentralized Application Platform"; longDescription = '' An open source, decentralized privacy platform built for global person to person eCommerce. diff --git a/third_party/nixpkgs/pkgs/applications/blockchains/trezor-suite/default.nix b/third_party/nixpkgs/pkgs/applications/blockchains/trezor-suite/default.nix index 311f14bb1f..0141dc32d2 100644 --- a/third_party/nixpkgs/pkgs/applications/blockchains/trezor-suite/default.nix +++ b/third_party/nixpkgs/pkgs/applications/blockchains/trezor-suite/default.nix @@ -8,7 +8,7 @@ let pname = "trezor-suite"; - version = "22.10.3"; + version = "22.11.1"; name = "${pname}-${version}"; suffix = { @@ -19,8 +19,8 @@ let src = fetchurl { url = "https://github.com/trezor/${pname}/releases/download/v${version}/Trezor-Suite-${version}-${suffix}.AppImage"; sha512 = { # curl -Lfs https://github.com/trezor/trezor-suite/releases/latest/download/latest-linux{-arm64,}.yml | grep ^sha512 | sed 's/: /-/' - aarch64-linux = "sha512-fI0N1V+6SEZ9eNf+G/w5RcY8oeA5MsVzJnpnWoMzkkHZh5jVHgNbcqVgSPbzvQ/WZNv1MX37KETcxmDwRx//yw=="; - x86_64-linux = "sha512-zN89Qw6fQh27EaN9ARNwqhiBaiNoMic6Aq2UPG0OSUtOjEOdkGJ2pbR8MgWVccSgRH8ZmAAXZ0snVKfZWHbCjA=="; + aarch64-linux = "sha512-cZZFc1Ij7KrF0Kc1Xmtg/73ASv56a6SFWFy3Miwl3P5u8ieZGXVDlSQyv84CsuYMbE0Vga3X0XS/BiF7nKNcnA=="; + x86_64-linux = "sha512-X/IEZGs43riUn6vC5bPyj4DS/VK+s7C10PbBnvwieaclBSVJyQ8H8hbn4eKi0kMVNEl0A9o8W09gXBxAhdNR9g=="; }.${stdenv.hostPlatform.system} or (throw "Unsupported system: ${stdenv.hostPlatform.system}"); }; diff --git a/third_party/nixpkgs/pkgs/applications/blockchains/wasabibackend/deps.nix b/third_party/nixpkgs/pkgs/applications/blockchains/wasabibackend/deps.nix index 273f2a5eaf..d7026875d0 100644 --- a/third_party/nixpkgs/pkgs/applications/blockchains/wasabibackend/deps.nix +++ b/third_party/nixpkgs/pkgs/applications/blockchains/wasabibackend/deps.nix @@ -1,7 +1,7 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "3.1.26"; sha256 = "0rib2121wri6wj6h4f6w4yqw9qp2xsad3ind63fmp1sr649jifyh"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-x64"; version = "3.1.26"; sha256 = "0z29rrhc87g0bi273lcqd608f7ngd16nv85v8549231yvf99n60x"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.win-x64"; version = "3.1.26"; sha256 = "0pbm6hpibsvq5w8hyvvllz4qns287x3l8bc07krffv23yfbv8zwy"; }) (fetchNuGet { pname = "Microsoft.AspNetCore.JsonPatch"; version = "3.1.1"; sha256 = "0c0aaz9rlh9chc53dnv5jryp0x0415hipaizrmih3kzwd3fmqpml"; }) (fetchNuGet { pname = "Microsoft.AspNetCore.Mvc.NewtonsoftJson"; version = "3.1.1"; sha256 = "1c2lrlp64kkacnjgdyygr6fqdawk10l8j4qgppii6rq61yjwhcig"; }) (fetchNuGet { pname = "Microsoft.Build"; version = "15.3.409"; sha256 = "0vzq6csp2yys9s96c7i37bjml439rdi47g8f5rzqdr7xf5a1jk81"; }) @@ -18,11 +18,6 @@ (fetchNuGet { pname = "Microsoft.Extensions.Logging.Abstractions"; version = "1.0.0"; sha256 = "1sh9bidmhy32gkz6fkli79mxv06546ybrzppfw5v2aq0bda1ghka"; }) (fetchNuGet { pname = "Microsoft.Extensions.Primitives"; version = "2.0.0"; sha256 = "1xppr5jbny04slyjgngxjdm0maxdh47vq481ps944d7jrfs0p3mb"; }) (fetchNuGet { pname = "Microsoft.NETCore.App"; version = "2.0.5"; sha256 = "0qb7k624w7l0zhapdp519ymqg84a67r8zyd8cpj42hywsgb0dqv6"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "3.1.26"; sha256 = "1vk4dr2z72nmjg2skqvy2m2h5brqp21v51pnd7ldpm7asgr5ck8n"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.win-x64"; version = "3.1.26"; sha256 = "0l5yfnpbd36n38rjlmhsnq4bniq1fcssv4qh8kb9h3qigz40qxj9"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "3.1.26"; sha256 = "1h9b8fwgwbycvn1ngxnpdz3s1zh59wi2iy8n4y2nfkmz2rbldrrm"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-x64"; version = "3.1.26"; sha256 = "0y06qz4pgflwia222mljg19nlfmhcg0qs1a8wm3zwj602wzy3nll"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.win-x64"; version = "3.1.26"; sha256 = "1half7rywhxb1x19gzddvjqbll4whx9wmwdlk57iy68djas95lmy"; }) (fetchNuGet { pname = "Microsoft.NETCore.DotNetAppHost"; version = "2.0.5"; sha256 = "00bsxdg9c8msjxyffvfi8siqk8v2m7ca8fqy1npv7b2pzg3byjws"; }) (fetchNuGet { pname = "Microsoft.NETCore.DotNetHostPolicy"; version = "2.0.5"; sha256 = "0v5csskiwpk8kz8wclqad8kcjmxr7ik4w99wl05740qvaag3qysk"; }) (fetchNuGet { pname = "Microsoft.NETCore.DotNetHostResolver"; version = "2.0.5"; sha256 = "1sz2fdp8fdwz21x3lr2m1zhhrbix6iz699fjkwiryqdjl4ygd3hw"; }) @@ -66,9 +61,6 @@ (fetchNuGet { pname = "runtime.unix.System.Diagnostics.Debug"; version = "4.0.11"; sha256 = "05ndbai4vpqrry0ghbfgqc8xblmplwjgndxmdn1zklqimczwjg2d"; }) (fetchNuGet { pname = "runtime.unix.System.Private.Uri"; version = "4.0.1"; sha256 = "0ic5dgc45jkhcr1g9xmmzjm7ffiw4cymm0fprczlx4fnww4783nm"; }) (fetchNuGet { pname = "runtime.unix.System.Runtime.Extensions"; version = "4.1.0"; sha256 = "0x1cwd7cvifzmn5x1wafvj75zdxlk3mxy860igh3x1wx0s8167y4"; }) - (fetchNuGet { pname = "runtime.win.System.Diagnostics.Debug"; version = "4.0.11"; sha256 = "1ylkj4v7aq00svij7aq82d86afpwqgrqf2kpikabxl26p19ry9wm"; }) - (fetchNuGet { pname = "runtime.win.System.Runtime.Extensions"; version = "4.1.0"; sha256 = "1zmx2msa04ka8mgh8viahi4pqpp86vdhzij2rg1jg131bwlv59yw"; }) - (fetchNuGet { pname = "runtime.win7.System.Private.Uri"; version = "4.0.1"; sha256 = "1ibrwabavdpqapnplm5kh6nz9vgcwv0wn61w1p60v262kif6sglp"; }) (fetchNuGet { pname = "Swashbuckle.AspNetCore"; version = "5.0.0"; sha256 = "0rn2awmzrsrppk97xbbwk4kq1mys9bygb5xhl6mphbk0hchrvh09"; }) (fetchNuGet { pname = "Swashbuckle.AspNetCore.Swagger"; version = "5.0.0"; sha256 = "1341nv8nmh6avs3y7w2szzir5qd0bndxwrkdmvvj3hcxj1126w2f"; }) (fetchNuGet { pname = "Swashbuckle.AspNetCore.SwaggerGen"; version = "5.0.0"; sha256 = "00swg2avqnb38q2bsxljd34n8rpknp74h9vbn0fdnfds3a32cqr4"; }) diff --git a/third_party/nixpkgs/pkgs/applications/display-managers/lightdm/default.nix b/third_party/nixpkgs/pkgs/applications/display-managers/lightdm/default.nix index 1817910c29..348f470641 100644 --- a/third_party/nixpkgs/pkgs/applications/display-managers/lightdm/default.nix +++ b/third_party/nixpkgs/pkgs/applications/display-managers/lightdm/default.nix @@ -116,9 +116,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; diff --git a/third_party/nixpkgs/pkgs/applications/editors/cpeditor/default.nix b/third_party/nixpkgs/pkgs/applications/editors/cpeditor/default.nix index 74394418fd..eaa2b0d995 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/cpeditor/default.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/cpeditor/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "cpeditor"; - version = "6.10.1"; + version = "6.11.1"; src = fetchFromGitHub { owner = "cpeditor"; repo = "cpeditor"; rev = version; - sha256 = "sha256-SIREoOapaZTLtqi0Z07lKmNqF9a9qIpgGxuhqaY3yfU="; + sha256 = "sha256-Uwo7ZE+9yrHV/+D6rvfew2d3ZJbpFOjgek38iYkPppw="; fetchSubmodules = true; }; diff --git a/third_party/nixpkgs/pkgs/applications/editors/gnome-builder/default.nix b/third_party/nixpkgs/pkgs/applications/editors/gnome-builder/default.nix index 634fd79282..bacc629448 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/gnome-builder/default.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/gnome-builder/default.nix @@ -129,7 +129,7 @@ stdenv.mkDerivation rec { ''; checkPhase = '' - export NO_AT_BRIDGE=1 + GTK_A11Y=none \ xvfb-run -s '-screen 0 800x600x24' dbus-run-session \ --config-file=${dbus}/share/dbus-1/session.conf \ meson test --print-errorlogs diff --git a/third_party/nixpkgs/pkgs/applications/editors/jove/default.nix b/third_party/nixpkgs/pkgs/applications/editors/jove/default.nix index ca494a37fa..fc8026fb5c 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/jove/default.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/jove/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "jove"; - version = "4.17.4.8"; + version = "4.17.4.9"; src = fetchFromGitHub { owner = "jonmacs"; repo = "jove"; rev = finalAttrs.version; - sha256 = "sha256-/n/TgVqyG/WeK+/DZqFZCdkQR4SD5+YmljLlzAehMvw="; + sha256 = "sha256-Lo5S3t4vewkpoihVdxa3yRrEzNWeNLHCZHXiLCxOH5o="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/third_party/nixpkgs/pkgs/applications/editors/kakoune/plugins/aliases.nix b/third_party/nixpkgs/pkgs/applications/editors/kakoune/plugins/aliases.nix index cf9a65c43f..2f097dee52 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/kakoune/plugins/aliases.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/kakoune/plugins/aliases.nix @@ -1,8 +1,8 @@ # Deprecated aliases - for backward compatibility -lib: overriden: +lib: overridden: -with overriden; +with overridden; let # Removing recurseForDerivation prevents derivations of aliased attribute @@ -21,7 +21,7 @@ let # Make sure that we are not shadowing something from # all-packages.nix. - checkInPkgs = n: alias: if builtins.hasAttr n overriden + checkInPkgs = n: alias: if builtins.hasAttr n overridden then throw "Alias ${n} is still in kakounePlugins" else alias; diff --git a/third_party/nixpkgs/pkgs/applications/editors/lapce/default.nix b/third_party/nixpkgs/pkgs/applications/editors/lapce/default.nix index ba02a06a6e..765139a9c5 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/lapce/default.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/lapce/default.nix @@ -76,9 +76,7 @@ rustPlatform.buildRustPackage rec { categories = [ "Development" "Utility" "TextEditor" ]; }) ]; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "Lightning-fast and Powerful Code Editor written in Rust"; diff --git a/third_party/nixpkgs/pkgs/applications/editors/nano/default.nix b/third_party/nixpkgs/pkgs/applications/editors/nano/default.nix index d7b1f54d39..cfb1d17c91 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/nano/default.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/nano/default.nix @@ -16,11 +16,11 @@ let in stdenv.mkDerivation rec { pname = "nano"; - version = "7.0"; + version = "7.1"; src = fetchurl { url = "mirror://gnu/nano/${pname}-${version}.tar.xz"; - sha256 = "jdbqw4srh4bYJoHw4a/YT2t1IQ0XORtkQ8Q35FFVIUk="; + sha256 = "V7p1Hpt1GfD23e5QUgLjh8dd3kQMH3qhuTEMw4FAaDY="; }; nativeBuildInputs = [ texinfo ] ++ optional enableNls gettext; diff --git a/third_party/nixpkgs/pkgs/applications/editors/netbeans/default.nix b/third_party/nixpkgs/pkgs/applications/editors/netbeans/default.nix index a004598fe8..9146b52626 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/netbeans/default.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/netbeans/default.nix @@ -3,7 +3,7 @@ }: let - version = "15"; + version = "16"; desktopItem = makeDesktopItem { name = "netbeans"; exec = "netbeans"; @@ -19,7 +19,7 @@ stdenv.mkDerivation { inherit version; src = fetchurl { url = "mirror://apache/netbeans/netbeans/${version}/netbeans-${version}-bin.zip"; - hash = "sha512-WxqAQiPKdMfQCw9Hxaa7K2VIGTJj+Hu9WO2ehG4yQUkHBd+l0f0siLKk/i2xqLE1ZA522rxKud6iwXDuAsjjDg=="; + hash = "sha512-k+Zj6TKW0tOSYvM6V1okF4Qz62gZMETC6XG98W23Vtz3+vdiaddd8BC2DBg7p9Z1CofRq8sbwtpeTJM3FaXv0g=="; }; buildCommand = '' @@ -64,6 +64,10 @@ stdenv.mkDerivation { description = "An integrated development environment for Java, C, C++ and PHP"; homepage = "https://netbeans.apache.org/"; license = lib.licenses.asl20; + sourceProvenance = with lib.sourceTypes; [ + binaryBytecode + binaryNativeCode + ]; maintainers = with lib.maintainers; [ sander rszibele asbachb ]; platforms = lib.platforms.unix; }; diff --git a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/build-vim-plugin.nix b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/build-vim-plugin.nix index 66234c2c19..2064190811 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/build-vim-plugin.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/build-vim-plugin.nix @@ -1,9 +1,6 @@ -{ lib, stdenv +{ lib +, stdenv , rtpPath -, vim -, vimCommandCheckHook -, vimGenDocHook -, neovimRequireCheckHook , toVimPlugin }: @@ -14,39 +11,46 @@ rec { overrideAttrs = f: addRtp (drv.overrideAttrs f); }; - buildVimPlugin = attrs@{ - name ? "${attrs.pname}-${attrs.version}", - namePrefix ? "vimplugin-", - src, - unpackPhase ? "", - configurePhase ? "", - buildPhase ? "", - preInstall ? "", - postInstall ? "", - path ? ".", - addonInfo ? null, - ... - }: - let drv = stdenv.mkDerivation (attrs // { - name = namePrefix + name; + buildVimPlugin = + { name ? "${attrs.pname}-${attrs.version}" + , namePrefix ? "vimplugin-" + , src + , unpackPhase ? "" + , configurePhase ? "" + , buildPhase ? "" + , preInstall ? "" + , postInstall ? "" + , path ? "." + , addonInfo ? null + , meta ? { } + , ... + }@attrs: + let + drv = stdenv.mkDerivation (attrs // { + name = namePrefix + name; - inherit unpackPhase configurePhase buildPhase addonInfo preInstall postInstall; + inherit unpackPhase configurePhase buildPhase addonInfo preInstall postInstall; - installPhase = '' - runHook preInstall + installPhase = '' + runHook preInstall - target=$out/${rtpPath}/${path} - mkdir -p $out/${rtpPath} - cp -r . $target + target=$out/${rtpPath}/${path} + mkdir -p $out/${rtpPath} + cp -r . $target - runHook postInstall - ''; - }); - in addRtp (toVimPlugin drv); + runHook postInstall + ''; + + meta = { + platforms = lib.platforms.all; + } // meta; + }); + in + addRtp (toVimPlugin drv); buildVimPluginFrom2Nix = attrs: buildVimPlugin ({ # vim plugins may override this buildPhase = ":"; - configurePhase =":"; + configurePhase = ":"; } // attrs); } diff --git a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/default.nix b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/default.nix index 17e03b7dd7..ab31ac6539 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/default.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/default.nix @@ -7,7 +7,7 @@ let inherit (vimUtils.override {inherit vim;}) - buildVimPluginFrom2Nix vimGenDocHook vimCommandCheckHook; + buildVimPluginFrom2Nix; inherit (lib) extends; diff --git a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/generated.nix b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/generated.nix index d658323daf..2d5842b5eb 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/generated.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/generated.nix @@ -27,6 +27,18 @@ final: prev: meta.homepage = "https://github.com/vim-scripts/BufOnly.vim/"; }; + ChatGPT-nvim = buildVimPluginFrom2Nix { + pname = "ChatGPT.nvim"; + version = "2022-12-23"; + src = fetchFromGitHub { + owner = "jackMort"; + repo = "ChatGPT.nvim"; + rev = "c1198dd914bfe7af1754c67beff441b0475e51ee"; + sha256 = "17nil4vnlvq6qmsgmbrn0ci48p2pfyv1wf2p31da2ld3hjp52wbm"; + }; + meta.homepage = "https://github.com/jackMort/ChatGPT.nvim/"; + }; + CheckAttach = buildVimPluginFrom2Nix { pname = "CheckAttach"; version = "2019-05-08"; @@ -161,12 +173,12 @@ final: prev: LeaderF = buildVimPluginFrom2Nix { pname = "LeaderF"; - version = "2022-12-09"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "Yggdroot"; repo = "LeaderF"; - rev = "3ce1a63f85128beea8d74a52baacea11c105bf0f"; - sha256 = "10mzrhhnh9jsxagpzx5pw3j4xnv573769wg9zk004y2h76pwyg2j"; + rev = "43433aa8dad1601acf923d3c25fa3325799508aa"; + sha256 = "111nhw85v6hkyjzfs8jx566s44i89mihvlcnwdgwc08pnmnm7fci"; }; meta.homepage = "https://github.com/Yggdroot/LeaderF/"; }; @@ -185,12 +197,12 @@ final: prev: Navigator-nvim = buildVimPluginFrom2Nix { pname = "Navigator.nvim"; - version = "2022-12-13"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "numToStr"; repo = "Navigator.nvim"; - rev = "a440fea38f8055f0704537a6eea2fae3c04970b6"; - sha256 = "018mg6iw7ynnnd9ikcj6mqxwyz5l5byq3g7b6fvr8a10pa017194"; + rev = "a2e7d6ebd26e647469135d4096dfa89da4f070e5"; + sha256 = "0jli6pba08n20n97h0wh6h36pkca9bwq93h9dipmb0q4a2zqb37m"; }; meta.homepage = "https://github.com/numToStr/Navigator.nvim/"; }; @@ -281,12 +293,12 @@ final: prev: SchemaStore-nvim = buildVimPluginFrom2Nix { pname = "SchemaStore.nvim"; - version = "2022-12-15"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "b0o"; repo = "SchemaStore.nvim"; - rev = "1e175de11fd7a8e0092d893753b8b797788efa7a"; - sha256 = "0spbn1c28ranm8zpyvsqyjkmhjg28y5vvghvp1m0qscvi52zfmdw"; + rev = "ceebc0d0e5f6fe48c7739331e05c3843c07ade37"; + sha256 = "04zwi4k8ldqy02xkqwpdbicpr5mpnz1l6p4ykwhjvzyjsjl782i9"; }; meta.homepage = "https://github.com/b0o/SchemaStore.nvim/"; }; @@ -521,6 +533,18 @@ final: prev: meta.homepage = "https://github.com/derekelkins/agda-vim/"; }; + ai-vim = buildVimPluginFrom2Nix { + pname = "ai.vim"; + version = "2022-12-16"; + src = fetchFromGitHub { + owner = "aduros"; + repo = "ai.vim"; + rev = "b5098a1d70be968444b6f3d9441443af3e357035"; + sha256 = "1hx4zilzc0vf62hiwk3qgyn12mjs8fw0wq1fw9g1v3k9v512z4fb"; + }; + meta.homepage = "https://github.com/aduros/ai.vim/"; + }; + alchemist-vim = buildVimPluginFrom2Nix { pname = "alchemist.vim"; version = "2020-04-27"; @@ -535,12 +559,12 @@ final: prev: ale = buildVimPluginFrom2Nix { pname = "ale"; - version = "2022-12-10"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "dense-analysis"; repo = "ale"; - rev = "8bcbb2995822c4062d00cb41df713fd76092f04f"; - sha256 = "0n7adhyc30778zd0l1pfml0xna8zfxcahzr9fxryqkx0ragp94jn"; + rev = "522b5d0433ba8c29f2f154f62184e34c2e5f301f"; + sha256 = "1h9xwjxnlkjrmhz1ixpshf7qhpl09ny8ynfbdcfzhzdm9aq8yra6"; }; meta.homepage = "https://github.com/dense-analysis/ale/"; }; @@ -803,20 +827,20 @@ final: prev: src = fetchFromGitHub { owner = "romgrk"; repo = "barbar.nvim"; - rev = "637a9d4b5f0ae203e4ab7e9d45297f85d3cce207"; - sha256 = "0d201rb76qgsaq6y04gzcybvifsqbdybgx2b6rddsf8waa11633n"; + rev = "de30eb4b095c7f1ae51fbcc0d01e8671e80f6b0b"; + sha256 = "0f2p62xxmisc2dxc4anfqxl700vjs0lp2vghc4xfpv07zw6dcb5j"; }; meta.homepage = "https://github.com/romgrk/barbar.nvim/"; }; barbecue-nvim = buildVimPluginFrom2Nix { pname = "barbecue.nvim"; - version = "2022-12-07"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "utilyre"; repo = "barbecue.nvim"; - rev = "50b3c69a39f70d7b99661d82f37bb9b04eca25bd"; - sha256 = "0p69khfwlgcqrq8d6d2xrr4913vpc7hywz498h3ig5mqaik6bsy5"; + rev = "894bd7a132832bba4d09155567f9e8114d9cc8d4"; + sha256 = "1xabr17md3hwjs92rcaxqhm60hl3pfz0kzj3i966z6vqs9dfnzmb"; }; meta.homepage = "https://github.com/utilyre/barbecue.nvim/"; }; @@ -955,12 +979,12 @@ final: prev: bufferline-nvim = buildVimPluginFrom2Nix { pname = "bufferline.nvim"; - version = "2022-11-16"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "akinsho"; repo = "bufferline.nvim"; - rev = "4ecfa81e470a589e74adcde3d5bb1727dd407363"; - sha256 = "0l2d28bh85cv722c25qda74nkwmd19nifyyqmsn5ac2s027pasd8"; + rev = "c7492a76ce8218e3335f027af44930576b561013"; + sha256 = "18vfx8mq2gsv2hqy0c0vgbmx5mhr63bb8ixrmzmjgvbx2djz1jdb"; }; meta.homepage = "https://github.com/akinsho/bufferline.nvim/"; }; @@ -979,12 +1003,12 @@ final: prev: calendar-vim = buildVimPluginFrom2Nix { pname = "calendar.vim"; - version = "2022-12-12"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "itchyny"; repo = "calendar.vim"; - rev = "d3aad0aa9d432cf8a312f3c33ae63987f8eae0f5"; - sha256 = "1i2w80h0zcm7i40hlp1r1ym5d7hk3m2ar19a6i6q4j6ws2wr29a0"; + rev = "2d11943edaca4b9a8ce127c25a56bf36c578a76a"; + sha256 = "1hkg4bdallk2a8h5nl1j9bx2cp0fk5f0nhydc6ycg54syh1ss7fd"; }; meta.homepage = "https://github.com/itchyny/calendar.vim/"; }; @@ -1015,12 +1039,12 @@ final: prev: ccc-nvim = buildVimPluginFrom2Nix { pname = "ccc.nvim"; - version = "2022-11-23"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "uga-rosa"; repo = "ccc.nvim"; - rev = "db80a70d5fc66e0700bc7c05f19da45221851bd0"; - sha256 = "06cdbbagfabgarykcj75hs7b1v14p4ssp8p75n6gxmfjhapdsmir"; + rev = "4ea096a150fe2636782f6f68b97d3cff7ee28b4f"; + sha256 = "1jb4dd9bg7q2an963fnn2mclpj52bjqvfv6k642757zfasx20x6p"; }; meta.homepage = "https://github.com/uga-rosa/ccc.nvim/"; }; @@ -1543,12 +1567,12 @@ final: prev: cmp-tabnine = buildVimPluginFrom2Nix { pname = "cmp-tabnine"; - version = "2022-11-21"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "tzachar"; repo = "cmp-tabnine"; - rev = "851fbcc8ee54bdb93f9482e13b5fc31b50012422"; - sha256 = "1ll0m244zvfj5xbic7dda8s42hfk0g64p6rqani335fiznf9gijw"; + rev = "e9603484cb1937fb84ace447a8d5cb467f9aab45"; + sha256 = "0s73ys2dz0scf62zjkxb8lgyzh3x6am7w5z4pb1xq0h9gk5ip2ll"; }; meta.homepage = "https://github.com/tzachar/cmp-tabnine/"; }; @@ -1675,12 +1699,12 @@ final: prev: coc-fzf = buildVimPluginFrom2Nix { pname = "coc-fzf"; - version = "2022-11-14"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "antoinemadec"; repo = "coc-fzf"; - rev = "403e69ff873cf4447adad0477db7b7563813f13a"; - sha256 = "1njkvzy0q7r9ssq2994rc389isjwycs05lyxba5l9jsi7df7had9"; + rev = "4f8d072df2609219b8d79b67641a9753e3d7fff0"; + sha256 = "1nsv5ag13yzcffq404darfk0vz4sbchj941bcf960znnlynlcya0"; }; meta.homepage = "https://github.com/antoinemadec/coc-fzf/"; }; @@ -1735,12 +1759,12 @@ final: prev: coc-nvim = buildVimPluginFrom2Nix { pname = "coc.nvim"; - version = "2022-12-14"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "neoclide"; repo = "coc.nvim"; - rev = "66d910665d7fef9e441293bab0fa08f77d6c004e"; - sha256 = "1kr8s5dxfq80hf8gdx3q3cji25ci4jj81b8mp3zyr7041xmd8pgq"; + rev = "95b43f67147391cf2c69e550bd001b742781d226"; + sha256 = "0rmva45znh39r4rhakk1zmqk9hrgi2d2daw8v1rfv1jd054w3vx1"; }; meta.homepage = "https://github.com/neoclide/coc.nvim/"; }; @@ -1807,24 +1831,24 @@ final: prev: command-t = buildVimPluginFrom2Nix { pname = "command-t"; - version = "2022-12-14"; + version = "2022-12-16"; src = fetchFromGitHub { owner = "wincent"; repo = "command-t"; - rev = "ba2a995c72287ac9469fbf79235917d4b8f343ce"; - sha256 = "0h085vl01v5g1gz4fbgcijpf9hr956k47d0k2dgx765x9vxwxi7b"; + rev = "23d2860931dcbcbdfb3543bed002e35d7b3b898b"; + sha256 = "0wqpyzggaxqplwi9w7ivndjkfisjv8f3lqw5dw7dps5zdk042svn"; }; meta.homepage = "https://github.com/wincent/command-t/"; }; comment-nvim = buildVimPluginFrom2Nix { pname = "comment.nvim"; - version = "2022-11-18"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "numtostr"; repo = "comment.nvim"; - rev = "5f01c1a89adafc52bf34e3bf690f80d9d726715d"; - sha256 = "0qgb1vx5ipzcgglphhk9wck55hdscx6bdh4lr2y7f7wfxg54r3d6"; + rev = "45dc21a71ad1450606f5e98261badb28db59d74c"; + sha256 = "05278b42qwm77svl3k2a17vsdlmfjknlwkx01x80na9sciav07mz"; }; meta.homepage = "https://github.com/numtostr/comment.nvim/"; }; @@ -2009,38 +2033,50 @@ final: prev: meta.homepage = "https://github.com/Shougo/context_filetype.vim/"; }; + copilot-lua = buildVimPluginFrom2Nix { + pname = "copilot.lua"; + version = "2022-12-20"; + src = fetchFromGitHub { + owner = "zbirenbaum"; + repo = "copilot.lua"; + rev = "81eb5d1bc2eddad5ff0b4e3c1c4be5c09bdfaa63"; + sha256 = "1hyv1iccy4fjpmdq16rl8pplhnrnz71nxjsndyf955q029l06ics"; + }; + meta.homepage = "https://github.com/zbirenbaum/copilot.lua/"; + }; + copilot-vim = buildVimPluginFrom2Nix { pname = "copilot.vim"; - version = "2022-12-06"; + version = "2022-12-19"; src = fetchFromGitHub { owner = "github"; repo = "copilot.vim"; - rev = "2f4f9259a5c0f927b31c4256cd3e4d7c6df87662"; - sha256 = "0sl6n0hi3y7hw7yyd4p93dpqxq8vvgl4h89640579k28hms22i45"; + rev = "324ec9eb69e20971b58340d0096c3caac7bc2089"; + sha256 = "1zmzca9brdm9css41m9yc6vqc9033c86whcs9ykz4v4f148kyxvg"; }; meta.homepage = "https://github.com/github/copilot.vim/"; }; coq-artifacts = buildVimPluginFrom2Nix { pname = "coq.artifacts"; - version = "2022-12-16"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "coq.artifacts"; - rev = "b346640db78186f26c6314e2d079e70051abb288"; - sha256 = "001jch8haq6jl0i1y7hkr4vv7aibrjyrf83s5vjvqjcp5mr1f5b9"; + rev = "9d90bbff10171fcd9c6c4598e2cc7de1e6101463"; + sha256 = "1pchn21aq8chrlk16qkwxc8q63bccysqk2lnz5gc5j3gnnlx3asm"; }; meta.homepage = "https://github.com/ms-jpq/coq.artifacts/"; }; coq-thirdparty = buildVimPluginFrom2Nix { pname = "coq.thirdparty"; - version = "2022-12-16"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "coq.thirdparty"; - rev = "e84c7319f90e4ccc557a635ba440eac5727445fb"; - sha256 = "0adhmc5mw7i1c8liw2fzygfmrk54lg2bfg1kcp1drlrm1hqkicwq"; + rev = "48c0b049999549c18365fc4d7bb23ecbae58b47d"; + sha256 = "0y4rwr4vfacvmj5bnia3s4h51fk73cay4kmwaajp1r1gbsxxiynq"; }; meta.homepage = "https://github.com/ms-jpq/coq.thirdparty/"; }; @@ -2059,12 +2095,12 @@ final: prev: coq_nvim = buildVimPluginFrom2Nix { pname = "coq_nvim"; - version = "2022-12-16"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "coq_nvim"; - rev = "d363d976a9583f1ad0fa85d96349423483b69901"; - sha256 = "0mdl90imaqwhx67z043c5f79c71gdigf4qwc80gkm3104g30sv0s"; + rev = "6ca864153bab793b5d75c8af1b8e2195145dba80"; + sha256 = "1mqciqyd4fjdrssf07mi3wk4qgvf48khpzgqzbsbv6c0g1k4pmn4"; }; meta.homepage = "https://github.com/ms-jpq/coq_nvim/"; }; @@ -2095,12 +2131,12 @@ final: prev: crates-nvim = buildVimPluginFrom2Nix { pname = "crates.nvim"; - version = "2022-12-08"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "saecki"; repo = "crates.nvim"; - rev = "22fcb7a623bab743fcae1532b272ae52a6e24fda"; - sha256 = "0cspbrbx3zz6zp59bbj6qx1f17xcbvcbx1920z8l1c1cisdh4m4a"; + rev = "a70328ae638e20548bcfc64eb9561101104b3008"; + sha256 = "0i5bpg4sxm61200mwi3flji5cciv8izbcp38i4bkjm82ad09byzf"; }; meta.homepage = "https://github.com/saecki/crates.nvim/"; }; @@ -2203,12 +2239,12 @@ final: prev: dashboard-nvim = buildVimPluginFrom2Nix { pname = "dashboard-nvim"; - version = "2022-11-22"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "glepnir"; repo = "dashboard-nvim"; - rev = "5ccce7b50c8ce81c01956864ff51b455ee6933c4"; - sha256 = "09zmv2s5fnpvjlkcy5hrjkqq58s5c10d321gx6ip7qhpaps3vgv0"; + rev = "115b9f9cec10e31aff39c077bf5a4881bc840916"; + sha256 = "0xvwsk6sl2yikppmx962hvgziib3wyybp1z528zvrl7a4xrfwx9n"; }; meta.homepage = "https://github.com/glepnir/dashboard-nvim/"; }; @@ -2577,24 +2613,24 @@ final: prev: dial-nvim = buildVimPluginFrom2Nix { pname = "dial.nvim"; - version = "2022-12-08"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "monaqa"; repo = "dial.nvim"; - rev = "f6d274bd8e32be65b99f1052a8b5353ef5e702d7"; - sha256 = "0lnzs4qqbnbrkxfp40hwrpvh0579qw0bnayjz0qzqhi115fss136"; + rev = "61afb28f61ba090a67a88186f7bc8a94212e509a"; + sha256 = "0zzmgyl0j9ajmmyiwbpyp5js0ssz8gnlll6kbyk421jybjy17l6n"; }; meta.homepage = "https://github.com/monaqa/dial.nvim/"; }; diffview-nvim = buildVimPluginFrom2Nix { pname = "diffview.nvim"; - version = "2022-12-14"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "sindrets"; repo = "diffview.nvim"; - rev = "c6a3d3f1de85bc67b2da62eaf266d4f8cf714fab"; - sha256 = "0jdsyn9idkjf5lb57nl4p8dir8cisxhp34v9jq5iyn8z0ba8j59m"; + rev = "3812e296d3977a24db62f7c18025755b40968d3a"; + sha256 = "0xqpbsv2pahdc4zxqwkv9r6n5vm3g0c60q3klg96k7cn737k8cyn"; }; meta.homepage = "https://github.com/sindrets/diffview.nvim/"; }; @@ -2625,12 +2661,12 @@ final: prev: dracula-nvim = buildVimPluginFrom2Nix { pname = "dracula.nvim"; - version = "2022-12-12"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "Mofiqul"; repo = "dracula.nvim"; - rev = "1ee6072c6638de86abc9aef43ac315fd7eede6aa"; - sha256 = "0xq0m5qy3c48bvc6rrhr9w3rzy51a0gl2wi4y64mxp96aapz7j6h"; + rev = "9195c478cf05c3369131a7a9c606cbbc5247b0c6"; + sha256 = "12288w7071d9s4sfv0bd7bzahrmwds9yabqzfpapassr8958w84j"; }; meta.homepage = "https://github.com/Mofiqul/dracula.nvim/"; }; @@ -2661,12 +2697,12 @@ final: prev: edge = buildVimPluginFrom2Nix { pname = "edge"; - version = "2022-12-13"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "sainnhe"; repo = "edge"; - rev = "a60ef7702c77288e79cc4c2bcd6fddf96e100db1"; - sha256 = "17z2y8dwzn7ildd6gjbrfink4jy48h1di7b40d1csbci4ayfa2fc"; + rev = "255b8a1e6c3c2a24afb625274dd61a08edcf2db6"; + sha256 = "0lp6fiyv4b289qn0835sznva59515vwih4xp0mbfnp6n5fv8c811"; }; meta.homepage = "https://github.com/sainnhe/edge/"; }; @@ -2747,12 +2783,12 @@ final: prev: everforest = buildVimPluginFrom2Nix { pname = "everforest"; - version = "2022-12-13"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "sainnhe"; repo = "everforest"; - rev = "8c1f892e31d22a0d99876793788d323eed68f3cd"; - sha256 = "0npczribj3lv0irpb0ka001r3sfqx93d981hm8aqi4wd1nsaqbvh"; + rev = "34c9fbc6f9777c4b1e5a65e590f0fa614c1e747c"; + sha256 = "1vla0d4gxw5664hbzw3ykp44vkdwxxpcq42gg43v1786jslx24zx"; }; meta.homepage = "https://github.com/sainnhe/everforest/"; }; @@ -2807,12 +2843,12 @@ final: prev: feline-nvim = buildVimPluginFrom2Nix { pname = "feline.nvim"; - version = "2022-12-04"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "feline-nvim"; repo = "feline.nvim"; - rev = "573e6d1e213de976256c84e1cb2f55665549b828"; - sha256 = "0m54mdxkpx4ds7clydiclq8m41vcf1sg6689r3kyp3q537kmc9k1"; + rev = "d48b6f92c6ccdd6654c956f437be49ea160b5b0c"; + sha256 = "1d3sj499mj63djy2bjp7yx5qyrzsq8gphzy3wl9fnfnni1bzwg4g"; }; meta.homepage = "https://github.com/feline-nvim/feline.nvim/"; }; @@ -2877,6 +2913,18 @@ final: prev: meta.homepage = "https://github.com/bogado/file-line/"; }; + firenvim = buildVimPluginFrom2Nix { + pname = "firenvim"; + version = "2022-11-10"; + src = fetchFromGitHub { + owner = "glacambre"; + repo = "firenvim"; + rev = "17a189f0f1e2d4197e00cd56dbeaed8c268bac8c"; + sha256 = "1fwwmvl1zciffwjf6iskqa5qychknnc300y9ympg51hlxzmm0vpz"; + }; + meta.homepage = "https://github.com/glacambre/firenvim/"; + }; + flake8-vim = buildVimPluginFrom2Nix { pname = "flake8-vim"; version = "2020-10-20"; @@ -2952,12 +3000,12 @@ final: prev: formatter-nvim = buildVimPluginFrom2Nix { pname = "formatter.nvim"; - version = "2022-11-08"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "mhartington"; repo = "formatter.nvim"; - rev = "804b96c0b7fea538af1a0a31daa2dabed0b16ad4"; - sha256 = "13wxjyzr1hq8iaa85yxqsa53ja4ccrq395q2gsk3g4vvjxcsw9wy"; + rev = "8a4c961330cc4688087f23d18fa7d2f1af9a4902"; + sha256 = "1s7ckv8xj8pjbl99niz3bb15ybhjvhqhs0vxj1a0vanfi8n4pjlb"; }; meta.homepage = "https://github.com/mhartington/formatter.nvim/"; }; @@ -2976,12 +3024,12 @@ final: prev: friendly-snippets = buildVimPluginFrom2Nix { pname = "friendly-snippets"; - version = "2022-12-13"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "rafamadriz"; repo = "friendly-snippets"; - rev = "2379c6245be10fbf0ebd057f0d1f89fe356bf8bc"; - sha256 = "10xxrx62mb71mh6q2zm82zkgbghlgq39fnqsaig3p947qjlinndn"; + rev = "1a6a02350568d6830bcfa167c72f9b6e75e454ae"; + sha256 = "0n4ia1g0jr4a4d27mjadwddmg5bqj4bgiy6vych4kmpz5yknk5i8"; }; meta.homepage = "https://github.com/rafamadriz/friendly-snippets/"; }; @@ -3084,24 +3132,24 @@ final: prev: fzf-lua = buildVimPluginFrom2Nix { pname = "fzf-lua"; - version = "2022-12-13"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "ibhagwan"; repo = "fzf-lua"; - rev = "b1dea843c2f4c623ac974afc074ce832a29f8548"; - sha256 = "1gfxk41h5ywv0i3xwf05mrrvnjs8h253saazm32if0sci7m6x99s"; + rev = "5abf66f63bf08121dd4e917488b59ccb693eee12"; + sha256 = "0nf3gqvzsk4cda5r0afa979cxfsjq9smy4dyjpw2dhyxrm32a5cc"; }; meta.homepage = "https://github.com/ibhagwan/fzf-lua/"; }; fzf-vim = buildVimPluginFrom2Nix { pname = "fzf.vim"; - version = "2022-09-22"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "junegunn"; repo = "fzf.vim"; - rev = "9ceac718026fd39498d95ff04fa04d3e40c465d7"; - sha256 = "1zyypxi8kv3gcc8crwkd52c1nnp06yqdyz9ici02sq121lpdfklg"; + rev = "fd7fab77b20fdf09180cabdd660d8c3b7fe7ca1a"; + sha256 = "1shljxj04vrifkrqk5mzldl5qwxf196h01bvxpa03kf20yl39wvd"; }; meta.homepage = "https://github.com/junegunn/fzf.vim/"; }; @@ -3240,12 +3288,12 @@ final: prev: gitsigns-nvim = buildNeovimPluginFrom2Nix { pname = "gitsigns.nvim"; - version = "2022-12-15"; + version = "2022-12-19"; src = fetchFromGitHub { owner = "lewis6991"; repo = "gitsigns.nvim"; - rev = "683187285385a0dde6c62e2e6b16e325effdcf04"; - sha256 = "1j4kwrbvgf9q4n4lphx36ml7ic94f7x34w5chl7dbr7ljpv1372w"; + rev = "2ab3bdf0a40bab53033048c6be75bda86316b55d"; + sha256 = "13j5cmrd54cx9d8rirmys01xgmf90ylc3wb5dzmsdjc7hy0viha2"; }; meta.homepage = "https://github.com/lewis6991/gitsigns.nvim/"; }; @@ -3286,6 +3334,18 @@ final: prev: meta.homepage = "https://github.com/ellisonleao/glow.nvim/"; }; + godbolt-nvim = buildVimPluginFrom2Nix { + pname = "godbolt.nvim"; + version = "2022-12-17"; + src = fetchFromGitHub { + owner = "p00f"; + repo = "godbolt.nvim"; + rev = "c7b3785afb3fcc28088acbddfba588d7552f664d"; + sha256 = "0r5yfjhfkkpqpghy7pid7wd5r75cqhxh14iamvh65lmi79hs0hn3"; + }; + meta.homepage = "https://github.com/p00f/godbolt.nvim/"; + }; + golden-ratio = buildVimPluginFrom2Nix { pname = "golden-ratio"; version = "2022-06-28"; @@ -3312,12 +3372,12 @@ final: prev: goto-preview = buildVimPluginFrom2Nix { pname = "goto-preview"; - version = "2022-10-22"; + version = "2022-12-19"; src = fetchFromGitHub { owner = "rmagatti"; repo = "goto-preview"; - rev = "778cf600684a87eb36f9bb469346cfa8d5384a76"; - sha256 = "1f4mxr73q1jgfrfir6ydmaa165fbhzmayxrl1srwx1n96ws5q4fg"; + rev = "de58c6538f6625de52e40442337fda00e77d17b3"; + sha256 = "0a44hsww02m6dc7sfqq81wks5hy7yd12rcz9jl576ris4r960vp3"; }; meta.homepage = "https://github.com/rmagatti/goto-preview/"; }; @@ -3372,24 +3432,24 @@ final: prev: gruvbox-flat-nvim = buildVimPluginFrom2Nix { pname = "gruvbox-flat.nvim"; - version = "2022-10-17"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "eddyekofo94"; repo = "gruvbox-flat.nvim"; - rev = "45d485921bc667956d843ee6777da7071ebca5d8"; - sha256 = "1bhyz70alv9mmm32xpa1aqjrnrczamwpjc7f27y1ia5h6wga8g5d"; + rev = "172269867994c0da7adcf02e89a068cda85eb805"; + sha256 = "10wamh4f8kkydgj0wckbaajzc1cyc04q9bidkz612vj14809dc6w"; }; meta.homepage = "https://github.com/eddyekofo94/gruvbox-flat.nvim/"; }; gruvbox-material = buildVimPluginFrom2Nix { pname = "gruvbox-material"; - version = "2022-12-13"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "sainnhe"; repo = "gruvbox-material"; - rev = "dca3fbce664de8d52ed5fcfbc0f0bc09d2f8a560"; - sha256 = "114zhhi9amkrdb9q6amasd81qbal7hlh9ywj4fvhgrqka7l5qazb"; + rev = "f4b9fd3b4795fe138aea93dd098112442108d277"; + sha256 = "13nphydsbp8vldjfffxc6l5x818lb3ciamiidf77nij50pi6dyx3"; }; meta.homepage = "https://github.com/sainnhe/gruvbox-material/"; }; @@ -3467,12 +3527,12 @@ final: prev: haskell-tools-nvim = buildVimPluginFrom2Nix { pname = "haskell-tools.nvim"; - version = "2022-12-12"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "MrcJkb"; repo = "haskell-tools.nvim"; - rev = "eefbcd2b1bd0b0e5ef8fcc2c087017db1e126d66"; - sha256 = "1gk3471lz4mg2k3jsl5y2jh3a16b564s6907i9bhprc4mgq5p7bg"; + rev = "7d771612036ffded31a80e34daa048e060566f9d"; + sha256 = "1rz9csy28bljyy5aad73iblqqa8f8kwsb9gklqpcfhzi628pp2bj"; }; meta.homepage = "https://github.com/MrcJkb/haskell-tools.nvim/"; }; @@ -3838,12 +3898,12 @@ final: prev: jedi-vim = buildVimPluginFrom2Nix { pname = "jedi-vim"; - version = "2022-11-23"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "davidhalter"; repo = "jedi-vim"; - rev = "6b8013c480b54614d20e38966c4cd8ac4d20b86d"; - sha256 = "1nfz7av0cxsbmc9winy72xdcgrn1sjhd2qrfcw1gyi5hqzsdsavh"; + rev = "e07338597639f08fc4ef0f1d55f401ce5da5ef9f"; + sha256 = "0qavd22pn2k42279cxpr5ayafw6f7cxlq32yixiik53zbx2zm9rd"; fetchSubmodules = true; }; meta.homepage = "https://github.com/davidhalter/jedi-vim/"; @@ -4005,6 +4065,18 @@ final: prev: meta.homepage = "https://github.com/dundalek/lazy-lsp.nvim/"; }; + lazy-nvim = buildVimPluginFrom2Nix { + pname = "lazy.nvim"; + version = "2022-12-25"; + src = fetchFromGitHub { + owner = "folke"; + repo = "lazy.nvim"; + rev = "6c5af82589f846a773ac2e8ed44f7479fb28a870"; + sha256 = "11256cyja2nc0lv2cdsl1s88l4s3vjx72f181hh1pzq2ml9z2b77"; + }; + meta.homepage = "https://github.com/folke/lazy.nvim/"; + }; + lazygit-nvim = buildVimPluginFrom2Nix { pname = "lazygit.nvim"; version = "2022-11-05"; @@ -4019,12 +4091,12 @@ final: prev: lean-nvim = buildVimPluginFrom2Nix { pname = "lean.nvim"; - version = "2022-12-09"; + version = "2022-12-19"; src = fetchFromGitHub { owner = "Julian"; repo = "lean.nvim"; - rev = "60a0ab74cb1bded492cebf2f5f4f25868b52d1ee"; - sha256 = "1rqgb90dh91l4pgkj6gl79lmnxynmr2w8iiwpx3rvyfbpsrkqyhi"; + rev = "0f7326f7e55ddbb69c057051566f5212d902b7f3"; + sha256 = "08kyanj07vs0f125kbwj6s3plxmy90a2g03w9xyfis7ccigysyv7"; }; meta.homepage = "https://github.com/Julian/lean.nvim/"; }; @@ -4055,24 +4127,24 @@ final: prev: leap-nvim = buildVimPluginFrom2Nix { pname = "leap.nvim"; - version = "2022-12-14"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "ggandor"; repo = "leap.nvim"; - rev = "5e7e4462cc4b9e6a13e0f25b81d88d8b331cb29f"; - sha256 = "1dp35q869qiw94jwfvc174vq7siggxz263srqs31gd9ivl6c2q7q"; + rev = "a5c9504290832e6bdbbb6265fd1ff02fc6485d20"; + sha256 = "1iz0h1nbsgyfmfdagpsg16drwqvclwciihky9ynr5kwxcsc60f88"; }; meta.homepage = "https://github.com/ggandor/leap.nvim/"; }; legendary-nvim = buildVimPluginFrom2Nix { pname = "legendary.nvim"; - version = "2022-12-08"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "mrjones2014"; repo = "legendary.nvim"; - rev = "7be09ac0cf0ac12d65e41c706822a24eb0b92971"; - sha256 = "08wz13l9lhqx21l1d32724mqpk3x10kakbw8r88isnwi8psbfs9r"; + rev = "f53ef425b1b6cb9dc907a054755138345fd2fd57"; + sha256 = "1jyakdsn285l7mqxvr80sd4p175s17xd44pslqmgippwqbdgj8ns"; }; meta.homepage = "https://github.com/mrjones2014/legendary.nvim/"; }; @@ -4163,12 +4235,12 @@ final: prev: lightline-bufferline = buildVimPluginFrom2Nix { pname = "lightline-bufferline"; - version = "2022-12-12"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "mengelbrecht"; repo = "lightline-bufferline"; - rev = "e4db24252d9b1bd7b329511e8caa69fefed67362"; - sha256 = "0lf8sbf1m0y76sqcqv7faybiballgy9n775vv33v80ax2rmgq62y"; + rev = "c0199a7027da92d9770d1e2a9f4bf6257c7ec7ef"; + sha256 = "0q0s9gbakmlyd13mb33gq41brkf0qs2isjaz7fd5xpgakqsldl3b"; }; meta.homepage = "https://github.com/mengelbrecht/lightline-bufferline/"; }; @@ -4247,12 +4319,12 @@ final: prev: lir-nvim = buildVimPluginFrom2Nix { pname = "lir.nvim"; - version = "2022-11-30"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "tamago324"; repo = "lir.nvim"; - rev = "806651bc22cc1aa0053fba4385a18800f576cc6b"; - sha256 = "1xi2l412637vkp79338p65xb4zm0licyzrp188s2rijjqf3g2mzb"; + rev = "84af01547e51e15fc97e878330414385eeb825e8"; + sha256 = "1idk82wyzwr1qk4waj8hik5jcv2zgbyc7zbb2bxl2vj0pdij8knw"; }; meta.homepage = "https://github.com/tamago324/lir.nvim/"; }; @@ -4426,12 +4498,12 @@ final: prev: lsp_signature-nvim = buildVimPluginFrom2Nix { pname = "lsp_signature.nvim"; - version = "2022-12-15"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "ray-x"; repo = "lsp_signature.nvim"; - rev = "e528f7313dc67aa1f8caa796a56232af5a569871"; - sha256 = "16cfgkring4g01aam7plw0rgrqvq8xxkmlvax0kfbjlviw4qfbwl"; + rev = "1979f1118e2b38084e7c148f279eed6e9300a342"; + sha256 = "0di84pidxf0mx2gcna3lhisx3drc1i2wajcrrc2dv7n122fv17yy"; }; meta.homepage = "https://github.com/ray-x/lsp_signature.nvim/"; }; @@ -4486,24 +4558,24 @@ final: prev: lualine-nvim = buildVimPluginFrom2Nix { pname = "lualine.nvim"; - version = "2022-11-28"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "nvim-lualine"; repo = "lualine.nvim"; - rev = "bfa0d99ba6f98d077dd91779841f1c88b7b5c165"; - sha256 = "1yr4p08s0yll3g39k62735g0bz21v0vg5f0vxizwhyy2cx49n90f"; + rev = "fffbcb829288c3ca366f17cdb8d46aefb5c1d6f3"; + sha256 = "08yz4p6y5pg8ak4dkpggsk89n6f6lv78rglh1q88zh5ymjbqs8mv"; }; meta.homepage = "https://github.com/nvim-lualine/lualine.nvim/"; }; luasnip = buildVimPluginFrom2Nix { pname = "luasnip"; - version = "2022-12-11"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "l3mon4d3"; repo = "luasnip"; - rev = "8b25e74761eead3dc47ce04b5e017fd23da7ad7e"; - sha256 = "0jf85bynp91dyg4xx06w4ha0cim6m5v26g5wxpml3flmwglj58fa"; + rev = "5570fd797eae0790affb54ea669a150cad76db5d"; + sha256 = "0052rkqyhniz6djz7gkblmdlndllwv9jhcl6kh973qq23pdb00n4"; fetchSubmodules = true; }; meta.homepage = "https://github.com/l3mon4d3/luasnip/"; @@ -4523,12 +4595,12 @@ final: prev: lush-nvim = buildNeovimPluginFrom2Nix { pname = "lush.nvim"; - version = "2022-11-09"; + version = "2022-12-16"; src = fetchFromGitHub { owner = "rktjmp"; repo = "lush.nvim"; - rev = "979f4d206e7111c2b710aa85cc723f6140d2ec98"; - sha256 = "1xmndvhxjzb6lsfd0i7ifyqk0p37hyb9qy6l3aj75k7ifd4bsy2w"; + rev = "4cc81a12731fbefce1582a940b755691eb3eb6d1"; + sha256 = "0zwb9d8makr9k20cdf7fajhk3frbh4n4p1zajxig0f3ws867zjqx"; }; meta.homepage = "https://github.com/rktjmp/lush.nvim/"; }; @@ -4583,23 +4655,23 @@ final: prev: material-nvim = buildVimPluginFrom2Nix { pname = "material.nvim"; - version = "2022-11-20"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "marko-cerovac"; repo = "material.nvim"; - rev = "2a80aea83a69d54c69fa1bb9b7c27ae396bf2390"; - sha256 = "1l3vvf09wvqhrrk3ww99mc4zbajjr4hmr4g7cm8v6z71r6s0rp00"; + rev = "0560abaac9369d1027169a50e5219c3e069d00f3"; + sha256 = "190cw0fzrswigq1vc43nmf28mzhbn82wg2xhiq5rymbdf1lvpm2m"; }; meta.homepage = "https://github.com/marko-cerovac/material.nvim/"; }; material-vim = buildVimPluginFrom2Nix { pname = "material.vim"; - version = "2022-09-14"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "kaicataldo"; repo = "material.vim"; - rev = "81d5d0bb30677b0846a2721a600f2f45db6d10a7"; + rev = "bdccc06f963d722111fc8887b22473997750b2de"; sha256 = "1j23wi0hh5h0pc0rk5dxvsc60k484h5haa2gfxzahjqd7kzil4y8"; }; meta.homepage = "https://github.com/kaicataldo/material.vim/"; @@ -4619,12 +4691,12 @@ final: prev: mini-nvim = buildVimPluginFrom2Nix { pname = "mini.nvim"; - version = "2022-12-11"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "echasnovski"; repo = "mini.nvim"; - rev = "82e04074117635ebe7ae2202953a0c3d78db5146"; - sha256 = "1rr5xb4nkwm4vjk8v2065dy7d55qgh8wr6fhgash2gzrfjvm7b8a"; + rev = "37e48cc5467fc695730d975bf269b10cc90bd3a3"; + sha256 = "1zqajz99pp3nx60d95kgy3924af1daj81r81yzpj187a2s0vdy4c"; }; meta.homepage = "https://github.com/echasnovski/mini.nvim/"; }; @@ -4955,12 +5027,12 @@ final: prev: neo-tree-nvim = buildVimPluginFrom2Nix { pname = "neo-tree.nvim"; - version = "2022-11-27"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "nvim-neo-tree"; repo = "neo-tree.nvim"; - rev = "7c6903b05b13c5d4c3882c896a59e6101cb51ea7"; - sha256 = "1ycwasdl48w2rwmwq8na63dk6wb6vdx7hnrwhbyxy6z9p207wpwj"; + rev = "73a90f6a736b51168ed05d89ed8872f75b98471c"; + sha256 = "0dpss9ydw3z8dkmjjagn799347svlw8yyp72h77z30k7awlcwqpx"; }; meta.homepage = "https://github.com/nvim-neo-tree/neo-tree.nvim/"; }; @@ -4979,12 +5051,12 @@ final: prev: neoconf-nvim = buildVimPluginFrom2Nix { pname = "neoconf.nvim"; - version = "2022-12-16"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "folke"; repo = "neoconf.nvim"; - rev = "456cb79ad62081bf5965628398774be0ea9d1f29"; - sha256 = "1946bg5b95flabd8h2l2z15w4alm06i7q0sh17vddaqhgf912psf"; + rev = "dd35a9b9172ae0f87eb407111dec754cf321002a"; + sha256 = "0ly5bx508iar3qgc6gx79hca9s47wd13d9pyr9h0xryqyrgsm027"; }; meta.homepage = "https://github.com/folke/neoconf.nvim/"; }; @@ -5003,12 +5075,12 @@ final: prev: neodev-nvim = buildVimPluginFrom2Nix { pname = "neodev.nvim"; - version = "2022-12-14"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "folke"; repo = "neodev.nvim"; - rev = "c87f3c9ffb256846e2a51f0292537073ca62d4d0"; - sha256 = "0b61x4sjp5lrvywbdqwis6v7wmh1cvhddpl9dhiq0ysjpj1gf8ww"; + rev = "c5f0a814abf89b5b1e3cfed95322813939bdc0c5"; + sha256 = "0aji887c2rmn9286jdx5wf1nj4gpyr0n1aar7rwx77k4va5fm06a"; }; meta.homepage = "https://github.com/folke/neodev.nvim/"; }; @@ -5087,12 +5159,12 @@ final: prev: neorg = buildVimPluginFrom2Nix { pname = "neorg"; - version = "2022-12-05"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "nvim-neorg"; repo = "neorg"; - rev = "a79bf5969e27a3f1f1478c9b05c187815f2b2390"; - sha256 = "1a8w2f5s50j4zzwkshxmj48lch7vd680hmmq3scl4q0knvjdyd9h"; + rev = "2c18f831effb5f3f383b2049902be23ea0dd7a8e"; + sha256 = "10lwjrwxjmag2jbhpzfv9g6zpl7mlmv646gr062pragb2cphrm7n"; }; meta.homepage = "https://github.com/nvim-neorg/neorg/"; }; @@ -5315,24 +5387,24 @@ final: prev: nlsp-settings-nvim = buildVimPluginFrom2Nix { pname = "nlsp-settings.nvim"; - version = "2022-12-15"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "tamago324"; repo = "nlsp-settings.nvim"; - rev = "3a32b1585c2af4b782074a2570b5d0c406a30914"; - sha256 = "0cv1c4z47ld0q0mw6fr49iymxa854ai2r1dkk6nwif1sl73hxz02"; + rev = "8f67460e1ae721b91a9439243af5e42d6f3930d6"; + sha256 = "1f8rpchb7gr2wzl1xy1ja74h052bc0cig05a8549l5f8kg3x0qip"; }; meta.homepage = "https://github.com/tamago324/nlsp-settings.nvim/"; }; nlua-nvim = buildVimPluginFrom2Nix { pname = "nlua.nvim"; - version = "2021-12-14"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "tjdevries"; repo = "nlua.nvim"; - rev = "3603ee35ed928acd961847aeac30c92a3a048997"; - sha256 = "0bdpplmgn0cvlgw37jn8qhl91qx4sjsyl88r1qzp6c0gjn0qfwi6"; + rev = "01aa428ff00605d52d0c0ece560f6a6d7971726b"; + sha256 = "1v80qmhhqc1frpvnz42wa84qaz6xkasyrz59aisifp1vqcn01lgk"; }; meta.homepage = "https://github.com/tjdevries/nlua.nvim/"; }; @@ -5351,12 +5423,12 @@ final: prev: noice-nvim = buildVimPluginFrom2Nix { pname = "noice.nvim"; - version = "2022-12-03"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "folke"; repo = "noice.nvim"; - rev = "e013b6ebbad0fab34013be6f073da38c53c9e1dc"; - sha256 = "1pxnj2m7v8m943xs24hspggwhwyv0nla96d38mh1r8bllhh367k8"; + rev = "585d24ec6e3fb4288414f864cfe2de7d025e8216"; + sha256 = "0z7d3nfr5vydk2pwjhl0zlw0ipnbqhbw02sbk6j7vrcw6l0aqd7f"; }; meta.homepage = "https://github.com/folke/noice.nvim/"; }; @@ -5375,12 +5447,12 @@ final: prev: nord-nvim = buildVimPluginFrom2Nix { pname = "nord.nvim"; - version = "2022-12-14"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "shaunsingh"; repo = "nord.nvim"; - rev = "8bbb85992dc6a92625e3b567884a120e194204c4"; - sha256 = "1qh4v3s8xxv3ma37ydipnprhvjncdk4g3hq7mhx8336hvr1rakyx"; + rev = "418e2507dcff84a7cb993ae4f37697b98e0c92ca"; + sha256 = "0zjlxq8xa7and5952lxz0irklxsrmh7k4bn905ggcd62hbpd5q6v"; }; meta.homepage = "https://github.com/shaunsingh/nord.nvim/"; }; @@ -5411,24 +5483,24 @@ final: prev: nui-nvim = buildVimPluginFrom2Nix { pname = "nui.nvim"; - version = "2022-12-15"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "MunifTanjim"; repo = "nui.nvim"; - rev = "7427f979cc0dc991d8d177028e738463f17bcfcb"; - sha256 = "0z2yxlvm10wcbgjbbyyl6zranv5f81mn29vq6b4q32l84ah8kvpw"; + rev = "20385a698e8a5dd98ee7e63f16b700a10b921098"; + sha256 = "0widn891dgw3isg9axrgqc94yxb8s1mr5vxr5qfnf9rm2qk1hx71"; }; meta.homepage = "https://github.com/MunifTanjim/nui.nvim/"; }; null-ls-nvim = buildVimPluginFrom2Nix { pname = "null-ls.nvim"; - version = "2022-12-14"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "jose-elias-alvarez"; repo = "null-ls.nvim"; - rev = "5d8e925d31d8ef8462832308c016ac4ace17597a"; - sha256 = "0vb6s4djzj4vyh5k0b3rs3vf01c4wy6q6w6rksgmjv6szh76zmav"; + rev = "b26851b3e7ac1c0c85666f8a74e36aef2acb89c6"; + sha256 = "0djmqka2b9yikjr1pllb572lvws86769z9bzj7xj984x1v1xf7rz"; }; meta.homepage = "https://github.com/jose-elias-alvarez/null-ls.nvim/"; }; @@ -5471,24 +5543,24 @@ final: prev: nvim-autopairs = buildVimPluginFrom2Nix { pname = "nvim-autopairs"; - version = "2022-12-07"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "windwp"; repo = "nvim-autopairs"; - rev = "9fa996123031b4cad100bd5afad04384a622c8a7"; - sha256 = "0js7snmg9223d54iayadlm3bjn54fs3mzqck26cpn4fa5m1nc295"; + rev = "03580d758231956d33c8dd91e2be195106a79fa4"; + sha256 = "1qc7i1q4mkxqqmmcn22aig3sagg8g3qn6iw7xy56lv8dxk8yml9d"; }; meta.homepage = "https://github.com/windwp/nvim-autopairs/"; }; nvim-base16 = buildVimPluginFrom2Nix { pname = "nvim-base16"; - version = "2022-11-02"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "RRethy"; repo = "nvim-base16"; - rev = "bd172d833538c48bd3d589fbc8bc2f3a395ecc7b"; - sha256 = "1h9d127s9w7qiq54596wsdgjbmhxvd7ik055n923wr4r84087vcn"; + rev = "be09864ae8b60f6f96d42ed60752dcfa3b7d31b5"; + sha256 = "02hy4358jqdf8pwis4w7z8rg4qw039c5cjvjlgbw4fzb02rqpvf6"; }; meta.homepage = "https://github.com/RRethy/nvim-base16/"; }; @@ -5507,12 +5579,12 @@ final: prev: nvim-bqf = buildVimPluginFrom2Nix { pname = "nvim-bqf"; - version = "2022-12-05"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "kevinhwang91"; repo = "nvim-bqf"; - rev = "3389264042e4590ed32ce26d7e47b17ec4e6e6d5"; - sha256 = "0l9fcy2ic5n7krngrz0cv8darb2kv3whhv2lvf312cx9xmjspq2f"; + rev = "b418b0a241d36509196944a6f6bee886c775d54f"; + sha256 = "1cjafp91jk9rrkiibsd7rp863gs51xpyrpkkprfy9x45nx6ihrmw"; }; meta.homepage = "https://github.com/kevinhwang91/nvim-bqf/"; }; @@ -5543,24 +5615,24 @@ final: prev: nvim-cmp = buildNeovimPluginFrom2Nix { pname = "nvim-cmp"; - version = "2022-12-15"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "nvim-cmp"; - rev = "8bbaeda725d5db6e4e1be2867a64b43bf547cf06"; - sha256 = "1ldbvspz6aam78d47ldpa7bv4z419bzsk5nhli75mz0vzidfvrw5"; + rev = "d09b0c396aaa078cdfe78316ec06940971136e85"; + sha256 = "1vf1j10mibc3jdz3d1skw9gy14vg5fnpzzlgvfcd7fgh3gm6lj7h"; }; meta.homepage = "https://github.com/hrsh7th/nvim-cmp/"; }; nvim-code-action-menu = buildVimPluginFrom2Nix { pname = "nvim-code-action-menu"; - version = "2022-12-14"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "weilbith"; repo = "nvim-code-action-menu"; - rev = "885105039b30f90096e5cc3b09e2fac9316604a8"; - sha256 = "17cp12pv7gb1pk93p9gchmsdsa3dfp9zqs6irisr3vb0azda4k8k"; + rev = "e4399dbaf6eabff998d3d5f1cbcd8d9933710027"; + sha256 = "01pbr8z8fn16vsdlsxrhd83rbx41pah477xr6p01lnmsqzwg3k7f"; }; meta.homepage = "https://github.com/weilbith/nvim-code-action-menu/"; }; @@ -5651,36 +5723,36 @@ final: prev: nvim-dap = buildVimPluginFrom2Nix { pname = "nvim-dap"; - version = "2022-12-12"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-dap"; - rev = "68d96871118a13365f3c33e4838990030fff80ec"; - sha256 = "0kb2kc61fhnf4g95vy5mhck4jm9ijlgmv3rv613j0i9aslnlipm1"; + rev = "6f2ea9e33b48a51849ec93c6c38148a5372018e4"; + sha256 = "0bjzqwvxn57n3rpx3sjk4cqdx876cgrbw744d86pzd1lrzdjixqm"; }; meta.homepage = "https://github.com/mfussenegger/nvim-dap/"; }; nvim-dap-go = buildVimPluginFrom2Nix { pname = "nvim-dap-go"; - version = "2022-12-15"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "leoluz"; repo = "nvim-dap-go"; - rev = "bd9823da22165ea4aa7ec232e8c3a9b3158e017a"; - sha256 = "0ii1867shcmwzzjkljhcyyfinl8y4xw8pl22ah5kydap4ra1s24p"; + rev = "8aa9e7ef317182b33fc3e04651041e8d367cc73a"; + sha256 = "0aifkj73vxr6s263g63bl269nbx6hvbk5sf0mq0m3y4z9ia8lf03"; }; meta.homepage = "https://github.com/leoluz/nvim-dap-go/"; }; nvim-dap-python = buildVimPluginFrom2Nix { pname = "nvim-dap-python"; - version = "2022-11-01"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-dap-python"; - rev = "27a0eff2bd3114269bb010d895b179e667e712bd"; - sha256 = "1pypxg18qj74yjlfrr9wdd0w0hlh2mvd5xv381rhnzvb4h8hnp2j"; + rev = "d4400d075c21ed8fb8e8ac6a5ff56f58f6e93531"; + sha256 = "1glhxrv57gc3g60i876d5p3429z4kl6mhkbvrf41kvcqqb8m21m0"; }; meta.homepage = "https://github.com/mfussenegger/nvim-dap-python/"; }; @@ -5735,12 +5807,12 @@ final: prev: nvim-fzf-commands = buildVimPluginFrom2Nix { pname = "nvim-fzf-commands"; - version = "2022-11-23"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "vijaymarupudi"; repo = "nvim-fzf-commands"; - rev = "2379ca4275f7822d1c0e4b50414d0b06696de696"; - sha256 = "0pvjf3afa210zk1y97q5zdsc150r9fxrp7l4ivymhli5g00whmzh"; + rev = "52f9450cd69f462aa1ecc5dc3e05ef3b77840e4f"; + sha256 = "03q1zzyarjirays1ih6d2d5jdy5hac7sglxa95n5hlrap3w9y859"; }; meta.homepage = "https://github.com/vijaymarupudi/nvim-fzf-commands/"; }; @@ -5783,24 +5855,24 @@ final: prev: nvim-highlite = buildVimPluginFrom2Nix { pname = "nvim-highlite"; - version = "2022-12-12"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "Iron-E"; repo = "nvim-highlite"; - rev = "44895245d10d98b221ba60858a4a94fd229b54ff"; - sha256 = "0ns32lk3k1dshvikbpm43nkciiv9d0frwm1bp8721p9w1cgi0amm"; + rev = "a6e397d9f901d419ea9d6fb09019c918bc6e9f69"; + sha256 = "1sl53z2pm2niysax90a8fiqcqdzhncjb35ap9rwx5xxjbpgjv8i2"; }; meta.homepage = "https://github.com/Iron-E/nvim-highlite/"; }; nvim-hlslens = buildVimPluginFrom2Nix { pname = "nvim-hlslens"; - version = "2022-12-04"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "kevinhwang91"; repo = "nvim-hlslens"; - rev = "7fb804f504fd0935d65246a1d5ddea73d9ceefc9"; - sha256 = "1fsqpd3idfqf5r95m2w32ajvldvha3844hl1x4hnwmwn26jn3iib"; + rev = "0e59a9d29c5811dfc1ffcb032e18064fa2008b4e"; + sha256 = "05gz02npc4bw25jh8cm3ljv4p2iy6p65y6nv335b8fhm682i647f"; }; meta.homepage = "https://github.com/kevinhwang91/nvim-hlslens/"; }; @@ -5819,12 +5891,12 @@ final: prev: nvim-jdtls = buildVimPluginFrom2Nix { pname = "nvim-jdtls"; - version = "2022-12-14"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-jdtls"; - rev = "69ad133ef7296b26f6f05ed5d0960628fbb15a83"; - sha256 = "0z3xsn52lgvcdfgc06w4b4m2hyyd6nzdlygwk5n97ryjaahhm07j"; + rev = "a5c6f38f8151d7b4f5b32c005a95022fa66f4c9d"; + sha256 = "1fdyb3cxqyj9iws54nhm76wnfadwhwd3ld0m3vpjyl6p85ss7iqa"; }; meta.homepage = "https://github.com/mfussenegger/nvim-jdtls/"; }; @@ -5903,12 +5975,12 @@ final: prev: nvim-lspconfig = buildVimPluginFrom2Nix { pname = "nvim-lspconfig"; - version = "2022-12-16"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "neovim"; repo = "nvim-lspconfig"; - rev = "e95c12cea141632d3502fad4fb1c9260a91a65f4"; - sha256 = "19xmj232j9lir27486qksf86f1wwblv7v9b7lpmial1p1nfj8m50"; + rev = "212b99bc12a5416df8b2a610711ba399e2fc388a"; + sha256 = "1yyi3iq5aacgad32jsvhj6ap37sy9m5mnqlqi6rn9x9c91213y19"; }; meta.homepage = "https://github.com/neovim/nvim-lspconfig/"; }; @@ -5999,12 +6071,12 @@ final: prev: nvim-nonicons = buildVimPluginFrom2Nix { pname = "nvim-nonicons"; - version = "2022-11-20"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "yamatsum"; repo = "nvim-nonicons"; - rev = "c9b3a3818c1f02ed584a822ed1471d7f1d3e23fe"; - sha256 = "1s6625pksvpi6ri8d1l6szvjf1m9nks92zvd8ff7h2sfyvf3bm5w"; + rev = "68ecb6476f1b96d03c702dce6cf3ef1e5171c9a8"; + sha256 = "1vmzl5b3a07kh8b4wqqxd05sygvlyxq9vkrsshn2lrxmpbdg6227"; }; meta.homepage = "https://github.com/yamatsum/nvim-nonicons/"; }; @@ -6095,28 +6167,40 @@ final: prev: nvim-spectre = buildVimPluginFrom2Nix { pname = "nvim-spectre"; - version = "2022-12-07"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "nvim-pack"; repo = "nvim-spectre"; - rev = "c332c9c0574a531392818baf4020b86ba5575942"; - sha256 = "0xkf01sr7pkm26xq8spns8765gpj7ibpdp4cx9klw6a9fx8sir9q"; + rev = "68ea562b485b6593e325e7916c3bd6e833d433e7"; + sha256 = "1r32ad6q18y3w3adkdgscya6gw9iynab5pgqv9an3924vzpbvi8w"; }; meta.homepage = "https://github.com/nvim-pack/nvim-spectre/"; }; nvim-surround = buildVimPluginFrom2Nix { pname = "nvim-surround"; - version = "2022-12-11"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "kylechui"; repo = "nvim-surround"; - rev = "6cc6b54d3728a17e34bb5c9b9db05c7e5690813d"; - sha256 = "06sbki4m8za9zsj643fj5wzx44xsa1nv23as1m9ip99cwqrvxqcc"; + rev = "6aafeeda19a98768d1c17ff6dde5548bc77a1a2d"; + sha256 = "0ci25qy82phrlm7lp9zaaiyvf17rk6yvczbiwf6b578r4c8jq87j"; }; meta.homepage = "https://github.com/kylechui/nvim-surround/"; }; + nvim-teal-maker = buildVimPluginFrom2Nix { + pname = "nvim-teal-maker"; + version = "2022-04-09"; + src = fetchFromGitHub { + owner = "svermeulen"; + repo = "nvim-teal-maker"; + rev = "4d7ef05fa47de4bd9d02c4578d66b7cdc6848807"; + sha256 = "1axz6znqs9p9a9vzqwm0znp7parn6msl2vwrmg5q6javcvzldym4"; + }; + meta.homepage = "https://github.com/svermeulen/nvim-teal-maker/"; + }; + nvim-terminal-lua = buildVimPluginFrom2Nix { pname = "nvim-terminal.lua"; version = "2019-10-17"; @@ -6131,36 +6215,36 @@ final: prev: nvim-tree-lua = buildVimPluginFrom2Nix { pname = "nvim-tree.lua"; - version = "2022-12-16"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "nvim-tree"; repo = "nvim-tree.lua"; - rev = "87409bb4afd0093193e1364faa47327fbfdfca87"; - sha256 = "0bsajg0d6fwzj6jgxkq9z44rf7jzd31yfn7wc8wkzhhlcc1fx69i"; + rev = "9e4c39572f631bb60ee15cb9d46e1daa9927a45e"; + sha256 = "0fw8c8jzpw2vrfh1ac27jbs0kgh3f98pixbwxwak98iq6a03vv50"; }; meta.homepage = "https://github.com/nvim-tree/nvim-tree.lua/"; }; nvim-treesitter = buildVimPluginFrom2Nix { pname = "nvim-treesitter"; - version = "2022-12-16"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "nvim-treesitter"; - rev = "36c6826274ac85e04558e875a30e82aca676e3fe"; - sha256 = "196klrl7yzawafzklrwcpz7qwrklwaaki653r40k95ljxsc5bf2r"; + rev = "a2d7e78b0714a0dc066416100b7398d3f0941c23"; + sha256 = "07mvh417zywnh5xhm2lkyhizs1gi2lwq0s6r0ad1cbxbjw6xfajd"; }; meta.homepage = "https://github.com/nvim-treesitter/nvim-treesitter/"; }; nvim-treesitter-context = buildVimPluginFrom2Nix { pname = "nvim-treesitter-context"; - version = "2022-12-14"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "nvim-treesitter-context"; - rev = "5d0367be7471f50c6b5f8338521b9e851b1d177d"; - sha256 = "0dqnxka1ihyvvx1l8h968k2a5h3045zwwp9hzqk4b5c3q1qyrgc8"; + rev = "d28654b012d4c56beafec630ef7143275dff76f8"; + sha256 = "1wv94ni2cfifvdc9a681pfv24cxzgcbpmrygl0vz594702yi3k67"; }; meta.homepage = "https://github.com/nvim-treesitter/nvim-treesitter-context/"; }; @@ -6191,12 +6275,12 @@ final: prev: nvim-treesitter-textobjects = buildVimPluginFrom2Nix { pname = "nvim-treesitter-textobjects"; - version = "2022-12-15"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "nvim-treesitter-textobjects"; - rev = "e0d2c72894db60001650b36357d3480f17e1c340"; - sha256 = "14c8m1s6c8hwn71797ir3rvwpjw1hgjcn28w1mb14w6781c8710k"; + rev = "83a494a6f93675beff7bbd320c04c87433b1462f"; + sha256 = "0qhi73kmdr3rr9jvklrvl7a7p7fz4i21i5yg1v927f15aq1lglsi"; }; meta.homepage = "https://github.com/nvim-treesitter/nvim-treesitter-textobjects/"; }; @@ -6287,12 +6371,12 @@ final: prev: nvimdev-nvim = buildVimPluginFrom2Nix { pname = "nvimdev.nvim"; - version = "2022-12-08"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "neovim"; repo = "nvimdev.nvim"; - rev = "3220bb394ab059888b1b0498bbe43d9435ccee22"; - sha256 = "01alhc1wlh7g0b1p0x2q49v4srh2vqiwcgv7sjis89wz2dnq5n48"; + rev = "63eba53a0ed93c8495623aee194ee0d4d44162f0"; + sha256 = "00acn9iq7p00280ixwh9325wh6k4r8a1s84afwsz3a2yvsvyssrf"; }; meta.homepage = "https://github.com/neovim/nvimdev.nvim/"; }; @@ -6383,12 +6467,12 @@ final: prev: onedarkpro-nvim = buildVimPluginFrom2Nix { pname = "onedarkpro.nvim"; - version = "2022-12-15"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "olimorris"; repo = "onedarkpro.nvim"; - rev = "99e0808b21cb3c7815c0a3ec17a4fc0e555d5997"; - sha256 = "09vqfg9dwlwq32b4xzhlgqw48l63qpq86pv291pp3jaghldgbcjb"; + rev = "7a7641e27f922496b4bf8493acd9f2f8da7ff864"; + sha256 = "0b2cm9inkw3wps8snxb09v789gi37k04swb8nfm3swa487r0dgr3"; }; meta.homepage = "https://github.com/olimorris/onedarkpro.nvim/"; }; @@ -6407,12 +6491,12 @@ final: prev: onenord-nvim = buildVimPluginFrom2Nix { pname = "onenord.nvim"; - version = "2022-12-14"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "rmehri01"; repo = "onenord.nvim"; - rev = "9a8ca2030c8b4c1a577da3b3e2e396458272953b"; - sha256 = "16n0cymqs44g2fl90kr3hdgfy913pxfxxh5nrfkmyl9jyir5s790"; + rev = "3fca21ce5a849b0a5f4c97a2e6db8e61669cc617"; + sha256 = "15vhgjpqg97ll57ysakyq794cncigik6024z6k22ky1m19ybhjhr"; }; meta.homepage = "https://github.com/rmehri01/onenord.nvim/"; }; @@ -6467,12 +6551,12 @@ final: prev: packer-nvim = buildVimPluginFrom2Nix { pname = "packer.nvim"; - version = "2022-12-07"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "wbthomason"; repo = "packer.nvim"; - rev = "64ae65fea395d8dc461e3884688f340dd43950ba"; - sha256 = "106yxm2gi86w8d1k96fr3wfiqnz8z6kkg1c58fvm9izl82anmbxd"; + rev = "dac4088c70f4337c6c40d1a2751266a324765797"; + sha256 = "129axd8cfm5y4n520z63cfsn8pix882f4l4nzvwmf62fqnr292i0"; }; meta.homepage = "https://github.com/wbthomason/packer.nvim/"; }; @@ -6575,12 +6659,12 @@ final: prev: playground = buildVimPluginFrom2Nix { pname = "playground"; - version = "2022-11-17"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "playground"; - rev = "1290fdf6f2f0189eb3b4ce8073d3fda6a3658376"; - sha256 = "1yznmc5a32b4bw0c9q0jfkbd77xmi7rmihfr0f44bcgqdxlp8151"; + rev = "3421bbbfec25a7c54ee041ffb9cb226b69b2b995"; + sha256 = "1zc9wwpb0565fw0g1mmhv2dkdlf57qvh7r133gcij9mp7jh87pgx"; }; meta.homepage = "https://github.com/nvim-treesitter/playground/"; }; @@ -6865,12 +6949,12 @@ final: prev: refactoring-nvim = buildVimPluginFrom2Nix { pname = "refactoring.nvim"; - version = "2022-12-15"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "theprimeagen"; repo = "refactoring.nvim"; - rev = "2677bcc52a13ef43e24c3bd7739bce2ec5ebf66b"; - sha256 = "1di0y9yhv2nq9bk6xpbmkwr0gh1kjsxn8qp0hp4a9hk8k4fkpc1s"; + rev = "2c72385b627e46bb66f23b8a11da40b4bb127506"; + sha256 = "14rbd79nfqzyhqb2bs57q4z9id7kh0r6jjg6g5j6cwqd7fjnaiwf"; }; meta.homepage = "https://github.com/theprimeagen/refactoring.nvim/"; }; @@ -6901,12 +6985,12 @@ final: prev: rest-nvim = buildNeovimPluginFrom2Nix { pname = "rest.nvim"; - version = "2022-12-12"; + version = "2022-12-19"; src = fetchFromGitHub { owner = "rest-nvim"; repo = "rest.nvim"; - rev = "0f26e2afc65d030c5fb7444303b55b9a334202c6"; - sha256 = "1sln2b4kji9cszc225cakiq7h6zm6wsqnfl4ai4py85l1aw43xj8"; + rev = "84e8208c17bbc9e3c092b860db85953ee2d60d17"; + sha256 = "0labx6k5padzc8j270v07gxx3v3vw8kf5xnh5dg6pywpx4lp728h"; }; meta.homepage = "https://github.com/rest-nvim/rest.nvim/"; }; @@ -7033,12 +7117,12 @@ final: prev: satellite-nvim = buildVimPluginFrom2Nix { pname = "satellite.nvim"; - version = "2022-11-30"; + version = "2022-12-16"; src = fetchFromGitHub { owner = "lewis6991"; repo = "satellite.nvim"; - rev = "3bcd90d5cf5e61b6f4a000aaad5b6aa79b9a8bc5"; - sha256 = "1s22ciz284za50yll9avghdfvnfmf7kgv4vrfpzh28qqy11vyj1s"; + rev = "84e47a303a1aa97e2a81df03ef040d41c8192134"; + sha256 = "0jk0jq3kv0i3jr95k9izd2zziws7pimlhxj72aj2pf1mvc7pvb66"; }; meta.homepage = "https://github.com/lewis6991/satellite.nvim/"; }; @@ -7238,12 +7322,12 @@ final: prev: sonokai = buildVimPluginFrom2Nix { pname = "sonokai"; - version = "2022-12-13"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "sainnhe"; repo = "sonokai"; - rev = "aca74a49f192935349c55f4d4e9b531bc1c96052"; - sha256 = "1kqbcd3g16h01wzh6pfmfkv9ka8cjyrq6a4yni8wi5khxk16vmrq"; + rev = "a2a648b709bc52d64504ba4fddedc25690029d8d"; + sha256 = "1h5jbbi22aipsyqrjsl8b9g39i4i0zqrxbrg4i40hbi07l5bb800"; }; meta.homepage = "https://github.com/sainnhe/sonokai/"; }; @@ -7383,12 +7467,12 @@ final: prev: srcery-vim = buildVimPluginFrom2Nix { pname = "srcery-vim"; - version = "2022-12-15"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "srcery-colors"; repo = "srcery-vim"; - rev = "7af46a5b032e3275dc6d3c993d72fb290d51f74d"; - sha256 = "1v5xld3v3i7i2xkp3r1nqcghriikpb2ak7d0a021hjbasm74fbgc"; + rev = "91958b5bcac9dd78d6c66fc75816464fac29e27c"; + sha256 = "18wp8kj8wj2w3x3qk1jlz0hsniw7jn9igps0rcgcfr6122qggh11"; }; meta.homepage = "https://github.com/srcery-colors/srcery-vim/"; }; @@ -7588,12 +7672,12 @@ final: prev: tabby-nvim = buildVimPluginFrom2Nix { pname = "tabby.nvim"; - version = "2022-11-30"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "nanozuki"; repo = "tabby.nvim"; - rev = "ad80d32ba42b0c7f3a06b5754b7f669bf71eadf0"; - sha256 = "1pbbb8w164pzrlsglmc5pls8x1jp3zv97m74hxljpwkiqjzfzfjn"; + rev = "187b604da1a6452c700ce21fdf340ffbea956298"; + sha256 = "0b61qmqzl8vqryy58p9688vhxwhfby6qsygi3720hvvgizxk9jka"; }; meta.homepage = "https://github.com/nanozuki/tabby.nvim/"; }; @@ -7733,12 +7817,12 @@ final: prev: tcomment_vim = buildVimPluginFrom2Nix { pname = "tcomment_vim"; - version = "2022-12-07"; + version = "2022-12-17"; src = fetchFromGitHub { owner = "tomtom"; repo = "tcomment_vim"; - rev = "dd1da14193c10f7f5b91638e438977b48d191aa9"; - sha256 = "1k3f821hc1kzajsb259309m57iwhjrika7i87ayx8pq1mvlxzdvc"; + rev = "b4930f9da28647e5417d462c341013f88184be7e"; + sha256 = "06nlnnrxh3jgnlcbbr7czpaz9v7n2g60mw28lshc14wzqpl01vvx"; }; meta.homepage = "https://github.com/tomtom/tcomment_vim/"; }; @@ -7793,12 +7877,12 @@ final: prev: telescope-file-browser-nvim = buildVimPluginFrom2Nix { pname = "telescope-file-browser.nvim"; - version = "2022-12-04"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "nvim-telescope"; repo = "telescope-file-browser.nvim"; - rev = "cad567e11131a01f2934930c1efc8b1b09a0dc56"; - sha256 = "0d0l47dmvsba5z8dnywmc55s964wzz3f202amxj5msh9jj051ry3"; + rev = "b8581d00afa02c6bb4c947348e3cee62db65b119"; + sha256 = "0bn1l3jkap292p399fyx848yyb34gb3am7ih0d6wxz93sjpgzsps"; }; meta.homepage = "https://github.com/nvim-telescope/telescope-file-browser.nvim/"; }; @@ -7817,12 +7901,12 @@ final: prev: telescope-fzf-native-nvim = buildVimPluginFrom2Nix { pname = "telescope-fzf-native.nvim"; - version = "2022-12-02"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "nvim-telescope"; repo = "telescope-fzf-native.nvim"; - rev = "ae9d95da9ff5669eb8e35f758fbf385b3e2fb7cf"; - sha256 = "1appy9vk69wbm1zzgxhpi42y401rkdbkbl4qpiagnqbwkz2wc6i0"; + rev = "fab3e2212e206f4f8b3bbaa656e129443c9b802e"; + sha256 = "0paiaag3aazfv8rr0i43maq34pn3iga3lkjyllhfysqvdm8jk50f"; }; meta.homepage = "https://github.com/nvim-telescope/telescope-fzf-native.nvim/"; }; @@ -7914,12 +7998,12 @@ final: prev: telescope-project-nvim = buildVimPluginFrom2Nix { pname = "telescope-project.nvim"; - version = "2022-10-10"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "nvim-telescope"; repo = "telescope-project.nvim"; - rev = "ff4d3cea905383a67d1a47b9dd210c4907d858c2"; - sha256 = "16byj7gcyxpn837x096a074vpj67drbd5ndcfpkvp1xyam9604b4"; + rev = "8e8ee37b7210761502cdf2c3a82b5ba8fb5b2972"; + sha256 = "0br4skyavnsk41s45z5qw0ny7g2lamd60c6clmwyrvim6hgqx12b"; }; meta.homepage = "https://github.com/nvim-telescope/telescope-project.nvim/"; }; @@ -7998,12 +8082,12 @@ final: prev: telescope-nvim = buildVimPluginFrom2Nix { pname = "telescope.nvim"; - version = "2022-12-02"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "nvim-telescope"; repo = "telescope.nvim"; - rev = "cabf991b1d3996fa6f3232327fc649bbdf676496"; - sha256 = "04h9hsy6az1hm0bcg8vf8vsj9hqbf0fi3q5fksdjpqpcf2m04j75"; + rev = "e960efa60e97df58e089b00270f09d60f27202c8"; + sha256 = "023g8dblp5bp4wa5955drfipwzjaarbxl5xa9pky1ax4pni3i1rw"; }; meta.homepage = "https://github.com/nvim-telescope/telescope.nvim/"; }; @@ -8227,12 +8311,12 @@ final: prev: tokyonight-nvim = buildVimPluginFrom2Nix { pname = "tokyonight.nvim"; - version = "2022-12-14"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "folke"; repo = "tokyonight.nvim"; - rev = "ecae454c303d5190fb0ded096205a99fae16c6d4"; - sha256 = "0h6s5pvsjlrkp0brwrqaib5zijpqqs352v89jjr60kylb36clfb5"; + rev = "8b55a47165348dd1d811f9e1f867bb17bb35a360"; + sha256 = "0glhl3dm4ispxcy1x9g495by6xfdqmvlyhcywjx10kqmi192cwxs"; }; meta.homepage = "https://github.com/folke/tokyonight.nvim/"; }; @@ -8263,12 +8347,12 @@ final: prev: treesj = buildVimPluginFrom2Nix { pname = "treesj"; - version = "2022-12-12"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "Wansmer"; repo = "treesj"; - rev = "9afe7983ce6351936a81d57adac651dc8f16c20b"; - sha256 = "1na8yxl0b1150c6b4shigh3asm2gy1yjlidp6bxhivzwh01rpp9j"; + rev = "8853418ad35abc35475131fa289bc8f3d704a1fa"; + sha256 = "08xbvrf0la34knv7jwrvnmnfv8a1mx09hs2h8lk6fymdijhdfa38"; }; meta.homepage = "https://github.com/Wansmer/treesj/"; }; @@ -8419,12 +8503,12 @@ final: prev: urlview-nvim = buildVimPluginFrom2Nix { pname = "urlview.nvim"; - version = "2022-12-06"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "axieax"; repo = "urlview.nvim"; - rev = "53c53bce3bffa96be2b5f855d7ffb1d1f208eee5"; - sha256 = "1hdx4k9wcn3j9zyaw0d4fg83w7phn59hh7zblqhzd8z61h8kfdpa"; + rev = "9ebb11fff1548ae9406bba8a06d9caabf686ef9a"; + sha256 = "0yjqc4is8zaf2m04a2kh079jp2635nn8nbpkqak416hgigs1agfc"; }; meta.homepage = "https://github.com/axieax/urlview.nvim/"; }; @@ -8827,12 +8911,12 @@ final: prev: vim-airline = buildVimPluginFrom2Nix { pname = "vim-airline"; - version = "2022-12-16"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "vim-airline"; repo = "vim-airline"; - rev = "6a4c82c950cc10388117e927b89a72a557e5944c"; - sha256 = "1mqlynscx1qhd2gxbz9bry6v4i28schhqcd1h4vvqc1lkcv3y4kw"; + rev = "9e2d021fc6088a2027315d7e7ae8bafa94f16a7d"; + sha256 = "0qfpq71hmhgjcy2l056jm4l9gz9hypv0c1kcm1ainwyhq0bkwr77"; }; meta.homepage = "https://github.com/vim-airline/vim-airline/"; }; @@ -8887,12 +8971,12 @@ final: prev: vim-anzu = buildVimPluginFrom2Nix { pname = "vim-anzu"; - version = "2022-11-08"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "osyo-manga"; repo = "vim-anzu"; - rev = "727da5e402d4f96127afafa4d8d2bf222f9c99f6"; - sha256 = "0i5pg88rl54dhwk8ldiqg7dkgz441xq2z9yc1v942s7kwlha609v"; + rev = "e0a61e479bc86323fb66bf75e4e36f6924cee4ce"; + sha256 = "0fba3918ik69cndpp9wb46aim6phdc9vwwk4i5f8w5wwv2baqb5w"; }; meta.homepage = "https://github.com/osyo-manga/vim-anzu/"; }; @@ -9223,12 +9307,12 @@ final: prev: vim-clap = buildVimPluginFrom2Nix { pname = "vim-clap"; - version = "2022-12-03"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "liuchengxu"; repo = "vim-clap"; - rev = "ea90c8cf804feea294bae47423a15b733a74b5b7"; - sha256 = "1v6f5ra84sdhrsbqp5vjyhlcjxnykmasbghni600l6ygzlgd2saq"; + rev = "15ba008e15a05f90dfec0b4a59124fccb3e8ffc1"; + sha256 = "167kmgd8793nhan0hpwyvi1z0jzfgrvhgdzbf8clzswxg7wvq773"; }; meta.homepage = "https://github.com/liuchengxu/vim-clap/"; }; @@ -9283,12 +9367,12 @@ final: prev: vim-code-dark = buildVimPluginFrom2Nix { pname = "vim-code-dark"; - version = "2022-10-13"; + version = "2022-12-16"; src = fetchFromGitHub { owner = "tomasiser"; repo = "vim-code-dark"; - rev = "f002d6d256a11c14a9de40c45a8ecb75b2292f8a"; - sha256 = "1f5v7msmdkpsgg7yhcg2b4ysfg97w2hhrwqbahq64j3y616426ir"; + rev = "48d44707a821f962f56c3d0553144c77211749fa"; + sha256 = "0pgrmcq79jbj68zw1s9wfa5lq133xn34gx3zd2r1dllp2ybqf62a"; }; meta.homepage = "https://github.com/tomasiser/vim-code-dark/"; }; @@ -9391,12 +9475,12 @@ final: prev: vim-cool = buildVimPluginFrom2Nix { pname = "vim-cool"; - version = "2022-11-29"; + version = "2022-12-23"; src = fetchFromGitHub { owner = "romainl"; repo = "vim-cool"; - rev = "471b72095378cbe14f51bc5d9f679e97c541a498"; - sha256 = "0bn323gb56kra3ciq56lidmhlnx3gbhhjajg6kjap5qqz0mp2ncq"; + rev = "80c19445728d70595c2f72d0436527e28292ebd9"; + sha256 = "1imhhsf5rhj13gchddfkgadn5z5i96gnw822nmx0ddcdvrm6kisf"; }; meta.homepage = "https://github.com/romainl/vim-cool/"; }; @@ -9487,12 +9571,12 @@ final: prev: vim-dadbod = buildVimPluginFrom2Nix { pname = "vim-dadbod"; - version = "2022-12-08"; + version = "2022-12-13"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-dadbod"; - rev = "34151ccce9f5ff16229b8e482a97e46997914cb3"; - sha256 = "09lia66yimk8h9y1bj50ar45c9r13k92jw009nxp1kfkb9nsk83y"; + rev = "70f86045e3a70ccdc9b448a9fe66a550290adca3"; + sha256 = "053cy6vmsvjrhjrgmnhg1s2cvxap3dyfniy9r8phd56isvlqd2i1"; }; meta.homepage = "https://github.com/tpope/vim-dadbod/"; }; @@ -10111,12 +10195,12 @@ final: prev: vim-gitgutter = buildVimPluginFrom2Nix { pname = "vim-gitgutter"; - version = "2022-10-22"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "airblade"; repo = "vim-gitgutter"; - rev = "400a12081f188f3fb639f8f962456764f39c6ff1"; - sha256 = "1rfg2wniappm64y5b6j6nmqsp41axgs6f3ghdzcjgak71b6mbng9"; + rev = "00df1089b6267f47c7c0f13536789feb9db1e65b"; + sha256 = "1qj22fhkhamva23jn1f1044vj01p3n4203zdhqasn8836jpw0f82"; }; meta.homepage = "https://github.com/airblade/vim-gitgutter/"; }; @@ -10159,12 +10243,12 @@ final: prev: vim-go = buildVimPluginFrom2Nix { pname = "vim-go"; - version = "2022-12-01"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "fatih"; repo = "vim-go"; - rev = "8d7677947e0be1eecfa1bcf2c1148804963ec4f6"; - sha256 = "1f2xklijsxbc7f2y26ps6bwyhn5sxbmv8gwy66l7yhfbc0zvic0w"; + rev = "8c4db1c61432511a3aa55971dabb2171cbcba7b1"; + sha256 = "1qzri85vzz706h5wq8n0h7xi610vfm1cykwgrkwannwarj9khnx6"; }; meta.homepage = "https://github.com/fatih/vim-go/"; }; @@ -10183,12 +10267,12 @@ final: prev: vim-graphql = buildVimPluginFrom2Nix { pname = "vim-graphql"; - version = "2022-06-05"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "jparise"; repo = "vim-graphql"; - rev = "4bf5d33bda83117537aa3c117dee5b9b14fc9333"; - sha256 = "119ldy55w58mq31zb8whlq17rp3ginvx7n45h1r91279p2gl1ch6"; + rev = "ee618bc2101040a4a702b4724a094ca2820562b4"; + sha256 = "1qj5jsdz3r9j6djhqdfjpd6qmpqbamngr8y4lvgkjpbjz2jvrgp1"; }; meta.homepage = "https://github.com/jparise/vim-graphql/"; }; @@ -10893,12 +10977,12 @@ final: prev: vim-lsp = buildVimPluginFrom2Nix { pname = "vim-lsp"; - version = "2022-12-03"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "prabirshrestha"; repo = "vim-lsp"; - rev = "0a8d2dfaedf1e51859317f675cefe8403041e76a"; - sha256 = "03yipczl11q76db7s1a11nmn3k6rw066y4x5jzracfny9f63miw3"; + rev = "2cb7ef587cd2c79dd98a7cd3ff301cc415296629"; + sha256 = "10krhi7cq6ijlpascsjjxwg4abfqg3kis4p8cm0lwaj7sgk5h5sv"; }; meta.homepage = "https://github.com/prabirshrestha/vim-lsp/"; }; @@ -12659,12 +12743,12 @@ final: prev: vim-tpipeline = buildVimPluginFrom2Nix { pname = "vim-tpipeline"; - version = "2022-11-24"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "vimpostor"; repo = "vim-tpipeline"; - rev = "776026d7311001495095f0b49dd2f0ebf33c3604"; - sha256 = "0zj65mm4fn5acknxr1y85lmjik3i6k67w4yj4frxd61nsfk32sqv"; + rev = "b4aefd5a1e697ea68d50df2f7b222036a7251df8"; + sha256 = "147mv6zn5b8my8a8w7ddk1g1wzj0xsdssb265j19vs8ajijg7bcy"; }; meta.homepage = "https://github.com/vimpostor/vim-tpipeline/"; }; @@ -12839,12 +12923,12 @@ final: prev: vim-vsnip = buildVimPluginFrom2Nix { pname = "vim-vsnip"; - version = "2022-11-30"; + version = "2022-12-20"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "vim-vsnip"; - rev = "e44026b5394fd79aa0f2118aaf41627ef9c354ee"; - sha256 = "1a14msxri37xs29xq80fw9mh6g9ipmc9g4ik2p0x9r5h2pz2nsbq"; + rev = "8dde8c0ef10bb1afdbb301e2bd7eb1c153dd558e"; + sha256 = "09vxb458xglzrmxjahxabnqkrkb0cbl6sf9jplp01v0cy3jjfmmw"; }; meta.homepage = "https://github.com/hrsh7th/vim-vsnip/"; }; @@ -12971,12 +13055,12 @@ final: prev: vim-xkbswitch = buildVimPluginFrom2Nix { pname = "vim-xkbswitch"; - version = "2022-12-08"; + version = "2022-12-21"; src = fetchFromGitHub { owner = "lyokha"; repo = "vim-xkbswitch"; - rev = "6bcc2dd50f8952e9d20760ccccd3425ecaa4b25e"; - sha256 = "09lh4cd2v8k0hj6ipik1lq78syl07aaf5aybpnf9l3gbvqbj5wnw"; + rev = "01e62dfd3f067318b2d4eb341801149b9ba6b34d"; + sha256 = "0xnbsw16xgsz5w026hhr7vz20sp7kd4yybbdni7clsw3xm6hywkf"; }; meta.homepage = "https://github.com/lyokha/vim-xkbswitch/"; }; @@ -13019,12 +13103,12 @@ final: prev: vim-zettel = buildVimPluginFrom2Nix { pname = "vim-zettel"; - version = "2022-12-15"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "michal-h21"; repo = "vim-zettel"; - rev = "9c6fe4cbb2a2d84300afadcc112318fbf7adad1f"; - sha256 = "0d3sv19d6karyxilpjfaab8lg37qbwx5arzr9daclky9762ipkf0"; + rev = "7bd110f8d370c1beb812b30af82336556fa44096"; + sha256 = "04r72b7vwbb5m7ik8lczknpl8qpfar3lhzj7plhzpq1sbqyj4kpm"; }; meta.homepage = "https://github.com/michal-h21/vim-zettel/"; }; @@ -13188,12 +13272,12 @@ final: prev: vimtex = buildVimPluginFrom2Nix { pname = "vimtex"; - version = "2022-12-06"; + version = "2022-12-18"; src = fetchFromGitHub { owner = "lervag"; repo = "vimtex"; - rev = "7a887028e91b12268fe812028621152dba549b3c"; - sha256 = "0q6qf5572b6v4k4xnf5ra5brkpjclh8r34rrhpidc3xkdmgifyg4"; + rev = "265cb5b8e23e125713e3d331d2c89383ca72cc09"; + sha256 = "1yy6ps0896zcsr55p7z9k4vbh2n78bq5mps3r13kv3y7aj9m394i"; }; meta.homepage = "https://github.com/lervag/vimtex/"; }; @@ -13296,12 +13380,12 @@ final: prev: which-key-nvim = buildVimPluginFrom2Nix { pname = "which-key.nvim"; - version = "2022-10-28"; + version = "2022-12-24"; src = fetchFromGitHub { owner = "folke"; repo = "which-key.nvim"; - rev = "61553aeb3d5ca8c11eea8be6eadf478062982ac9"; - sha256 = "11wvm95484axpjzar8y3pc8ah9162gn6s63yhn7z7y4c7zm4zci1"; + rev = "8682d3003595017cd8ffb4c860a07576647cc6f8"; + sha256 = "0x3dz9qkpqjccxqlqv4ncji9f2ggnzzpd901szg3jbsqxdals89p"; }; meta.homepage = "https://github.com/folke/which-key.nvim/"; }; @@ -13537,12 +13621,12 @@ final: prev: zk-nvim = buildVimPluginFrom2Nix { pname = "zk-nvim"; - version = "2022-12-04"; + version = "2022-12-19"; src = fetchFromGitHub { owner = "mickael-menu"; repo = "zk-nvim"; - rev = "60478c653aa5fbeac3035b71f5800c5c7a2f5361"; - sha256 = "0jkmdr7db8rs3cv9xziy58sx4fikxjz1wyaag4g1r7l5mwsf9zrh"; + rev = "2fd9f9f29270bb28477e000100625276ec2a2377"; + sha256 = "1b8w280yivsb34547y7kdcsvgcil41sfj8kvyvs6d24yrxbqs20w"; }; meta.homepage = "https://github.com/mickael-menu/zk-nvim/"; }; @@ -13573,12 +13657,12 @@ final: prev: catppuccin-nvim = buildVimPluginFrom2Nix { pname = "catppuccin-nvim"; - version = "2022-12-14"; + version = "2022-12-16"; src = fetchFromGitHub { owner = "catppuccin"; repo = "nvim"; - rev = "26e498db297607fe17a6206c5a28f0f4cb532954"; - sha256 = "0ixgg83kkr4r5mdkw1m44svkd31qdbvaliycrgasyhbw8k774m4x"; + rev = "55f43a952856bc0029e6cef066297c6cfab3451d"; + sha256 = "1y9k2hzykw7m227kihaf2cygbkirwqrha3m40k2807a66nrcjyk3"; }; meta.homepage = "https://github.com/catppuccin/nvim/"; }; @@ -13597,24 +13681,24 @@ final: prev: chad = buildVimPluginFrom2Nix { pname = "chad"; - version = "2022-12-16"; + version = "2022-12-25"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "chadtree"; - rev = "0cd715bd487f300320d963c6bb291fd2e5eacc3f"; - sha256 = "0vfs2c3q2kx28x5i089drvrmqfdn6n4031lip4zbpg1dsf9rf07i"; + rev = "0deeed4aef43b249650cf4fc57722d5a4905703f"; + sha256 = "1b98v4jzinf2hwdfhijl4qh12gvg3pr86w3j27wazlhb86wqlmi5"; }; meta.homepage = "https://github.com/ms-jpq/chadtree/"; }; dracula-vim = buildVimPluginFrom2Nix { pname = "dracula-vim"; - version = "2022-12-12"; + version = "2022-12-22"; src = fetchFromGitHub { owner = "dracula"; repo = "vim"; - rev = "b7645942bf91154f76ca016b612131168522d19e"; - sha256 = "1x91l9dkmzkfj4dmzg2vm0qxkmr2ilmqql7c774jcwfhr90zd54x"; + rev = "eb577d47b0cfc9191bf04c414b4042d5f1a980f8"; + sha256 = "1zp55jg5prsvvq12y8c03arlwplgwwpr5hy14w9hhfmp2bix98lq"; }; meta.homepage = "https://github.com/dracula/vim/"; }; diff --git a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix index e942ed6363..67af5e9de1 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix @@ -3,6 +3,17 @@ { buildGrammar, fetchFromGitHub, fetchFromGitLab, fetchgit }: { + ada = buildGrammar { + language = "ada"; + version = "e9e2ec9"; + source = fetchFromGitHub { + owner = "briot"; + repo = "tree-sitter-ada"; + rev = "e9e2ec9d3b6302e9b455901bec00036e29d1c121"; + hash = "sha256-buTQ1GjaJSVy4SPikZq88bifWubyHtPSI4ac7p1/tOg="; + }; + meta.homepage = "https://github.com/briot/tree-sitter-ada"; + }; agda = buildGrammar { language = "agda"; version = "80ea622"; @@ -27,12 +38,12 @@ }; astro = buildGrammar { language = "astro"; - version = "947e930"; + version = "22697b0"; source = fetchFromGitHub { owner = "virchau13"; repo = "tree-sitter-astro"; - rev = "947e93089e60c66e681eba22283f4037841451e7"; - hash = "sha256-q1ni++SPbq5y+47fPb6TryMw86gpULwNcXwi5yjXCWI="; + rev = "22697b0e2413464b7abaea9269c5e83a59e39a83"; + hash = "sha256-vp2VjkfBEYEUwUCjBlbVjPIB49QIikdFAITzzFLZX+U="; }; meta.homepage = "https://github.com/virchau13/tree-sitter-astro"; }; @@ -104,12 +115,12 @@ }; c_sharp = buildGrammar { language = "c_sharp"; - version = "8e4ec08"; + version = "1bd772f"; source = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-c-sharp"; - rev = "8e4ec08f1dae1d72f082df0f7e1176772f553d47"; - hash = "sha256-BIqfaFFwco3aE65N9tRtawxFEXvaVwQvoMgM3cg10/k="; + rev = "1bd772f69b0db577122533514a239b184650adf2"; + hash = "sha256-ySgSavQflqFXHY25DjX16aP4KgK2HFdsQ6HeYaerxNI="; }; meta.homepage = "https://github.com/tree-sitter/tree-sitter-c-sharp"; }; @@ -404,12 +415,12 @@ }; gdscript = buildGrammar { language = "gdscript"; - version = "2a6abda"; + version = "a8fa839"; source = fetchFromGitHub { owner = "PrestonKnopp"; repo = "tree-sitter-gdscript"; - rev = "2a6abdaa47fcb91397e09a97c7433fd995ea46c6"; - hash = "sha256-YDLPYwWHnwqj7CpgUKRXQYj2a6ZJUKc0bcalVSJ99Ew="; + rev = "a8fa839150d05baaf4d5a472520ee71e9b1d8b3c"; + hash = "sha256-uSpic8MKMvl1p7LOHNn5EJGp1iOYkeqcRt7skdROmBo="; }; meta.homepage = "https://github.com/PrestonKnopp/tree-sitter-gdscript"; }; @@ -593,12 +604,12 @@ }; help = buildGrammar { language = "help"; - version = "ce20f13"; + version = "61c7505"; source = fetchFromGitHub { owner = "neovim"; repo = "tree-sitter-vimdoc"; - rev = "ce20f13c3f12506185754888feaae3f2ad54c287"; - hash = "sha256-XklORrP4ToX4klXFYxMv2s63INWugDyjl3mtLDdUHlg="; + rev = "61c75058299f3d1cf565697e4073d7b2cc6a6d6c"; + hash = "sha256-MTossQzmBoHqXu933suYUUyDbmb20uO5oZlV31BYqIA="; }; meta.homepage = "https://github.com/neovim/tree-sitter-vimdoc"; }; @@ -615,12 +626,12 @@ }; hlsl = buildGrammar { language = "hlsl"; - version = "329e3c8"; + version = "39c822b"; source = fetchFromGitHub { owner = "theHamsta"; repo = "tree-sitter-hlsl"; - rev = "329e3c8bd6f696a6128e0dccba34b2799dc3037e"; - hash = "sha256-unxcw0KTlMDtcdjvIZidU/QckjfHBtc+LzAR7SukdU0="; + rev = "39c822b795bd6533815d100b5e7d1ec7778a1c2a"; + hash = "sha256-WXlOl+aopL332rW2c2dYyf/xoYx9g7BfkdMUIFJbxzg="; }; meta.homepage = "https://github.com/theHamsta/tree-sitter-hlsl"; }; @@ -736,23 +747,23 @@ }; jsonnet = buildGrammar { language = "jsonnet"; - version = "768a384"; + version = "505f5bd"; source = fetchFromGitHub { owner = "sourcegraph"; repo = "tree-sitter-jsonnet"; - rev = "768a384989391237c6d55ff3d878a0d1e0d2b4fa"; - hash = "sha256-kSG0YwtkzGVz8RIYBrE0ZyUMc6YTtQO8XvHHiwy5GL4="; + rev = "505f5bd90053ae895aa3d6f2bac8071dd9abd8b2"; + hash = "sha256-XZqywAzM+UCKto/OFn50hhRpEyFVLpFV7Q1Z0NKoPsI="; }; meta.homepage = "https://github.com/sourcegraph/tree-sitter-jsonnet"; }; julia = buildGrammar { language = "julia"; - version = "36b099e"; + version = "f254ff9"; source = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-julia"; - rev = "36b099e9ea577f64ba53323115028dadd2991d2c"; - hash = "sha256-sd6Ue7Ur6Juq2kZbuC/E/gK9JJPVG/5UTToQ+5hdTD0="; + rev = "f254ff9c52e994f629a60821662917d2c6c0e8eb"; + hash = "sha256-918mGh91hAl8hx4HoGOXr2BFoDtMz5yPkQRMDrkk1Mg="; }; meta.homepage = "https://github.com/tree-sitter/tree-sitter-julia"; }; @@ -813,12 +824,12 @@ }; lua = buildGrammar { language = "lua"; - version = "f5e84ff"; + version = "0fc8996"; source = fetchFromGitHub { owner = "MunifTanjim"; repo = "tree-sitter-lua"; - rev = "f5e84ffc2b06858401e0d2edf5dce009efbe34b3"; - hash = "sha256-9ig+F2W6MB5uSS3XFUL2OCW9PKYkb4KPpGN2DWKEdhY="; + rev = "0fc89962b7ff5c7d676b8592c1cbce1ceaa806fd"; + hash = "sha256-MbNP1/NKdSkUTydmK819o8vMKUZFan1yE7d227xMsh4="; }; meta.homepage = "https://github.com/MunifTanjim/tree-sitter-lua"; }; @@ -1115,12 +1126,12 @@ }; query = buildGrammar { language = "query"; - version = "0695cd0"; + version = "0717de0"; source = fetchFromGitHub { owner = "nvim-treesitter"; repo = "tree-sitter-query"; - rev = "0695cd0760532de7b54f23c667d459b5d1332b44"; - hash = "sha256-DwhvOvUb3hNmZTTk5HkZ9X1DCWz+G3+YJ0l/PqLVDdU="; + rev = "0717de07078a20a8608c98ad5f26c208949d0e15"; + hash = "sha256-dWWof8rYFTto3A4BfbKTKcNieRbwFdF6xDXW9tQvAqQ="; }; meta.homepage = "https://github.com/nvim-treesitter/tree-sitter-query"; }; @@ -1291,12 +1302,12 @@ }; sql = buildGrammar { language = "sql"; - version = "8dc7fa0"; + version = "8635357"; source = fetchFromGitHub { owner = "derekstride"; repo = "tree-sitter-sql"; - rev = "8dc7fa0e51145f0312eedbb5aff9945bd967fb8f"; - hash = "sha256-L6mur9BnDzA1mgtsWdyMC52IY9sKwt/xDkfPv2VKPPs="; + rev = "8635357363f8b01931ce6abbe0c937aa73e47bf8"; + hash = "sha256-p3R8uGIHyzYnRnKYWpeqMAcuk1xjKlPvB5vllPqUvrs="; }; generate = true; meta.homepage = "https://github.com/derekstride/tree-sitter-sql"; @@ -1336,12 +1347,12 @@ }; swift = buildGrammar { language = "swift"; - version = "693411c"; + version = "f94e1d6"; source = fetchFromGitHub { owner = "alex-pinkus"; repo = "tree-sitter-swift"; - rev = "693411cb5a1167311ccd84708348281630562726"; - hash = "sha256-KNmRR2Od2uTOHiENeCXoTKAp2jvzSsEhzqf9WmiL3Vo="; + rev = "f94e1d6dd8f4df6c7c8aa07da625e498ebb27d09"; + hash = "sha256-DtcGcywpwCZoGNllZEetE+s1bwMNrRdooGdttAG3Ra0="; }; generate = true; meta.homepage = "https://github.com/alex-pinkus/tree-sitter-swift"; @@ -1357,6 +1368,16 @@ }; meta.homepage = "https://github.com/RaafatTurki/tree-sitter-sxhkdrc"; }; + t32 = buildGrammar { + language = "t32"; + version = "f8106fc"; + source = fetchgit { + url = "https://codeberg.org/xasc/tree-sitter-t32"; + rev = "f8106fcf5a27f905b3d9d55d9cd3e910bea70c60"; + hash = "sha256-hKddSekx67Yqm4+LqVaH8Sf1+73RlCnXE6th2FTHB34="; + }; + meta.homepage = "https://codeberg.org/xasc/tree-sitter-t32"; + }; teal = buildGrammar { language = "teal"; version = "1ae8c68"; @@ -1461,12 +1482,12 @@ }; v = buildGrammar { language = "v"; - version = "66b92a8"; + version = "f0aa56e"; source = fetchFromGitHub { owner = "vlang"; repo = "vls"; - rev = "66b92a89ef1e149300df79c0b2a934ad959c8eec"; - hash = "sha256-R6Irz3sdyzKH1qWOUwUYK1OKhYs0PUYS/azYn/nb6jk="; + rev = "f0aa56eec7689f08a389c90ad8d3e5e0d18b3cd7"; + hash = "sha256-d69SvXDWxeRk2hvou8MhXUpUrSBwYENqFDGpT/Y5UpM="; }; location = "tree_sitter_v"; meta.homepage = "https://github.com/vlang/vls"; diff --git a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/nvim-treesitter/update.py b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/nvim-treesitter/update.py index 580c1aa22d..a780633112 100755 --- a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/nvim-treesitter/update.py +++ b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/nvim-treesitter/update.py @@ -71,7 +71,7 @@ def generate_grammar(item): repo = "{repo}";""" case _: - cmd += ["fetchgit", "url"] + cmd += ["fetchgit", "--url", url] generated += f"""fetchgit {{ url = "{url}";""" diff --git a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/overrides.nix b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/overrides.nix index 6dc04fee00..140a3b317c 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/overrides.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/overrides.nix @@ -123,6 +123,10 @@ self: super: { }; }); + ChatGPT-nvim = super.ChatGPT-nvim.overrideAttrs (old: { + dependencies = with self; [ nui-nvim plenary-nvim telescope-nvim ]; + }); + clang_complete = super.clang_complete.overrideAttrs (old: { # In addition to the arguments you pass to your compiler, you also need to # specify the path of the C++ std header (if you are using C++). @@ -669,6 +673,14 @@ self: super: { dependencies = with self; [ plenary-nvim ]; }); + nvim-teal-maker = super.nvim-teal-maker.overrideAttrs (old: { + postPatch = '' + substituteInPlace lua/tealmaker/init.lua \ + --replace cyan ${luaPackages.cyan}/bin/cyan + ''; + vimCommandCheck = "TealBuild"; + }); + nvim-treesitter = super.nvim-treesitter.overrideAttrs (old: callPackage ./nvim-treesitter/overrides.nix { } self super ); @@ -681,6 +693,10 @@ self: super: { configurePhase = "cd vim"; }); + orgmode = super.orgmode.overrideAttrs (old: { + dependencies = with self; [ (nvim-treesitter.withPlugins (p: [ p.org ])) ]; + }); + inherit parinfer-rust; plenary-nvim = super.plenary-nvim.overrideAttrs (old: { @@ -703,7 +719,10 @@ self: super: { # needs "http" and "json" treesitter grammars too rest-nvim = super.rest-nvim.overrideAttrs (old: { - dependencies = with self; [ plenary-nvim ]; + dependencies = with self; [ + plenary-nvim + (nvim-treesitter.withPlugins (p: [ p.http p.json ])) + ]; }); skim = buildVimPluginFrom2Nix { @@ -718,18 +737,18 @@ self: super: { sniprun = let - version = "1.1.2"; + version = "1.2.8"; src = fetchFromGitHub { owner = "michaelb"; repo = "sniprun"; rev = "v${version}"; - sha256 = "sha256-WL0eXwiPhcndI74wtFox2tSnZn1siE86x2MLkfpxxT4="; + sha256 = "sha256-iPZ0DPAErkMJIn85t1FIiGhLcMZlL06iNKLqmRu7gXI="; }; sniprun-bin = rustPlatform.buildRustPackage { pname = "sniprun-bin"; inherit version src; - cargoSha256 = "sha256-1WbgnsjoFdvko6VRKY+IjafMNqvJvyIZCDk8I9GV3GM="; + cargoSha256 = "sha256-HZEh6jtuRqsyjyDbDIV38x2N1unbSu24D8vrPZ17ktE="; nativeBuildInputs = [ makeWrapper ]; @@ -1038,6 +1057,10 @@ self: super: { }); }); + vim-dadbod-ui = super.vim-dadbod-ui.overrideAttrs (old: { + dependencies = with self; [ vim-dadbod ]; + }); + vim-dasht = super.vim-dasht.overrideAttrs (old: { preFixup = '' substituteInPlace $out/autoload/dasht.vim \ @@ -1147,6 +1170,8 @@ self: super: { pname = "vim-markdown-composer-bin"; inherit (super.vim-markdown-composer) src version; cargoSha256 = "sha256-Vie8vLTplhaVU4E9IohvxERfz3eBpd62m8/1Ukzk8e4="; + # tests require network access + doCheck = false; }; in super.vim-markdown-composer.overrideAttrs (old: { diff --git a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/vim-plugin-names b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/vim-plugin-names index dff2ab29a7..42db886687 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/vim-plugin-names +++ b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/vim-plugin-names @@ -1,6 +1,7 @@ repo,branch,alias https://github.com/euclidianAce/BetterLua.vim/,, https://github.com/vim-scripts/BufOnly.vim/,, +https://github.com/jackMort/ChatGPT.nvim/,HEAD, https://github.com/chrisbra/CheckAttach/,, https://github.com/vim-scripts/Colour-Sampler-Pack/,, https://github.com/whonore/Coqtail/,, @@ -42,6 +43,7 @@ https://github.com/eikenb/acp/,, https://github.com/stevearc/aerial.nvim/,, https://github.com/Numkil/ag.nvim/,, https://github.com/derekelkins/agda-vim/,, +https://github.com/aduros/ai.vim/,HEAD, https://github.com/slashmili/alchemist.vim/,, https://github.com/dense-analysis/ale/,, https://github.com/vim-scripts/align/,, @@ -168,6 +170,7 @@ https://github.com/rhysd/conflict-marker.vim/,, https://github.com/Olical/conjure/,, https://github.com/wellle/context.vim/,, https://github.com/Shougo/context_filetype.vim/,, +https://github.com/zbirenbaum/copilot.lua/,HEAD, https://github.com/github/copilot.vim/,, https://github.com/ms-jpq/coq.artifacts/,HEAD, https://github.com/ms-jpq/coq.thirdparty/,HEAD, @@ -240,6 +243,7 @@ https://github.com/lambdalisue/fern.vim/,, https://github.com/wincent/ferret/,, https://github.com/j-hui/fidget.nvim/,, https://github.com/bogado/file-line/,, +https://github.com/glacambre/firenvim/,HEAD, https://github.com/andviro/flake8-vim/,, https://github.com/ggandor/flit.nvim/,HEAD, https://github.com/ncm2/float-preview.nvim/,, @@ -274,6 +278,7 @@ https://github.com/lewis6991/gitsigns.nvim/,, https://github.com/gregsexton/gitv/,, https://github.com/gleam-lang/gleam.vim/,, https://github.com/ellisonleao/glow.nvim/,, +https://github.com/p00f/godbolt.nvim/,HEAD, https://github.com/roman/golden-ratio/,, https://github.com/buoto/gotests-vim/,, https://github.com/rmagatti/goto-preview/,, @@ -335,6 +340,7 @@ https://github.com/qnighy/lalrpop.vim/,, https://github.com/sk1418/last256/,, https://github.com/latex-box-team/latex-box/,, https://github.com/dundalek/lazy-lsp.nvim/,HEAD, +https://github.com/folke/lazy.nvim/,HEAD, https://github.com/kdheepak/lazygit.nvim/,, https://github.com/Julian/lean.nvim/,, https://github.com/leanprover/lean.vim/,, @@ -515,6 +521,7 @@ https://github.com/dcampos/nvim-snippy/,HEAD, https://github.com/ishan9299/nvim-solarized-lua/,, https://github.com/nvim-pack/nvim-spectre/,, https://github.com/kylechui/nvim-surround/,main, +https://github.com/svermeulen/nvim-teal-maker/,HEAD, https://github.com/norcalli/nvim-terminal.lua/,, https://github.com/kyazdani42/nvim-tree.lua/,, https://github.com/nvim-treesitter/nvim-treesitter/,, diff --git a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/vim-utils.nix b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/vim-utils.nix index 6607ff2b8c..4235aa5e92 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/vim-utils.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/vim/plugins/vim-utils.nix @@ -391,8 +391,7 @@ rec { } ./neovim-require-check-hook.sh) {}; inherit (import ./build-vim-plugin.nix { - inherit lib stdenv rtpPath vim vimGenDocHook - toVimPlugin vimCommandCheckHook neovimRequireCheckHook; + inherit lib stdenv rtpPath toVimPlugin; }) buildVimPlugin buildVimPluginFrom2Nix; diff --git a/third_party/nixpkgs/pkgs/applications/editors/vscode/extensions/default.nix b/third_party/nixpkgs/pkgs/applications/editors/vscode/extensions/default.nix index 06c1467d94..7c43c0493c 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/vscode/extensions/default.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/vscode/extensions/default.nix @@ -1483,8 +1483,8 @@ let mktplcRef = { name = "latex-workshop"; publisher = "James-Yu"; - version = "9.1.1"; - sha256 = "sha256-Xt/z5r9R090Z9nP1v7k+jYm9EOcjy0GfYiYpc7jNid4="; + version = "9.2.0"; + sha256 = "sha256-AAADJkMXsKvpEHBH8+TNM0x3CGEGVtf/b+tce297rkw="; }; meta = with lib; { changelog = "https://marketplace.visualstudio.com/items/James-Yu.latex-workshop/changelog"; @@ -3011,6 +3011,22 @@ let llvm-org.lldb-vscode = llvmPackages_8.lldb; + waderyan.gitblame = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "gitblame"; + publisher = "waderyan"; + version = "10.1.0"; + sha256 = "TTYBaJ4gcMVICz4bGZTvbNRPpWD4tXuAJbI8QcHNDv0="; + }; + meta = { + changelog = "https://marketplace.visualstudio.com/items/waderyan.gitblame/changelog"; + description = "Visual Studio Code Extension - See Git Blame info in status bar"; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=waderyan.gitblame"; + homepage = "https://github.com/Sertion/vscode-gitblame"; + license = lib.licenses.mit; + }; + }; + WakaTime.vscode-wakatime = callPackage ./wakatime { }; wingrunr21.vscode-ruby = buildVscodeMarketplaceExtension { diff --git a/third_party/nixpkgs/pkgs/applications/editors/vscode/extensions/remote-ssh/default.nix b/third_party/nixpkgs/pkgs/applications/editors/vscode/extensions/remote-ssh/default.nix index ae9cbb7fb0..ee2f8dbec9 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/vscode/extensions/remote-ssh/default.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/vscode/extensions/remote-ssh/default.nix @@ -9,28 +9,69 @@ let inherit (vscode-utils) buildVscodeMarketplaceExtension; - # patch runs on remote machine hence use of which - # links to local node if version is 12 + nodeVersion = "16"; + + # As VS Code executes this code on the remote machine + # we test to see if we can build Node from Nixpkgs + # otherwise we check if the globally installed Node + # is usable. patch = '' - f="$HOME/.vscode-server/bin/$COMMIT_ID/node" - localNodePath=''$(which node) - if [ -x "''$localNodePath" ]; then - localNodeVersion=''$(node -v) - if [ "\''${localNodeVersion:1:2}" = "12" ]; then - echo PATCH: replacing ''$f with ''$localNodePath - rm ''$f - ln -s ''$localNodePath ''$f + # Use Node from nixpkgs for NixOS hosts + # + + serverDir="$HOME/.vscode-server/bin/$COMMIT_ID" + serverNode="$serverDir/node" + echo "VS Code Node: $serverNode" + + # Check if VS Code Server has a non-working Node or the wrong version of Node + if ! nodeVersion=$($serverNode -v) || [ "\''${nodeVersion:1:2}" != "${nodeVersion}" ]; then + echo "VS Code Node Version: $nodeVersion" + + if nix-build "" -A nodejs-${nodeVersion}_x --out-link "$serverDir/nix" && [ -e "$serverDir/nix/bin/node" ]; then + nodePath="$serverDir/nix/bin/node" + fi + + echo "Node from Nix: $nodePath" + + nodeVersion=$($nodePath -v) + echo "Node from Nix Version: $nodeVersion" + + if [ "\''${nodeVersion:1:2}" != "${nodeVersion}" ]; then + echo "Getting Node from Nix failed, use Local Node instead" + nodePath=$(which node) + echo "Local Node: $nodePath" + nodeVersion=$($nodePath -v) + echo "Local Node Version: $nodeVersion" + fi + + if [ "\''${nodeVersion:1:2}" == "${nodeVersion}" ]; then + echo PATCH: replacing $serverNode with $nodePath + ln -sf $nodePath $serverNode fi fi + + nodeVersion=$($serverNode -v) + echo "VS Code Node Version: $nodeVersion" + + if [ "\''${nodeVersion:1:2}" != "${nodeVersion}" ]; then + echo "Unsupported VS Code Node version: $nodeVersion", quitting + fail_with_exitcode ''${o.InstallExitCode.ServerTransferFailed} + fi + ${lib.optionalString useLocalExtensions '' # Use local extensions if [ -d $HOME/.vscode/extensions ]; then - if ! test -L "$HOME/.vscode-server/extensions"; then - mkdir -p $HOME/.vscode-server - ln -s $HOME/.vscode/extensions $HOME/.vscode-server/ + if [ -e $HOME/.vscode-server/extensions ]; then + mv $HOME/.vscode-server/extensions $HOME/.vscode-server/extensions.bak fi + + mkdir -p $HOME/.vscode-server + ln -s $HOME/.vscode/extensions $HOME/.vscode-server/extensions fi ''} + + # + # Start the server ''; in buildVscodeMarketplaceExtension { @@ -43,7 +84,7 @@ buildVscodeMarketplaceExtension { postPatch = '' substituteInPlace "out/extension.js" \ - --replace "# install extensions" '${patch}' + --replace '# Start the server\n' '${patch}' ''; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/editors/vscode/generic.nix b/third_party/nixpkgs/pkgs/applications/editors/vscode/generic.nix index 59910c8942..c41fcb4f4e 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/vscode/generic.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/vscode/generic.nix @@ -1,7 +1,7 @@ { stdenv, lib, makeDesktopItem , unzip, libsecret, libXScrnSaver, libxshmfence, wrapGAppsHook, makeWrapper , atomEnv, at-spi2-atk, autoPatchelfHook -, systemd, fontconfig, libdbusmenu, glib, buildFHSUserEnvBubblewrap +, systemd, fontconfig, libdbusmenu, glib, buildFHSUserEnvBubblewrap, wayland # Populate passthru.tests , tests @@ -66,7 +66,7 @@ let buildInputs = [ libsecret libXScrnSaver libxshmfence ] ++ lib.optionals (!stdenv.isDarwin) ([ at-spi2-atk ] ++ atomEnv.packages); - runtimeDependencies = lib.optionals stdenv.isLinux [ (lib.getLib systemd) fontconfig.lib libdbusmenu ]; + runtimeDependencies = lib.optionals stdenv.isLinux [ (lib.getLib systemd) fontconfig.lib libdbusmenu wayland ]; nativeBuildInputs = [ unzip ] ++ lib.optionals stdenv.isLinux [ @@ -169,6 +169,10 @@ let krb5 ]) ++ additionalPkgs pkgs; + extraBwrapArgs = [ + "--bind-try /etc/nixos/ /etc/nixos/" + ]; + # symlink shared assets, including icons and desktop entries extraInstallCommands = '' ln -s "${unwrapped}/share" "$out/" diff --git a/third_party/nixpkgs/pkgs/applications/editors/vscode/vscode.nix b/third_party/nixpkgs/pkgs/applications/editors/vscode/vscode.nix index 1e1db2ea89..16f723020d 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/vscode/vscode.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/vscode/vscode.nix @@ -18,17 +18,17 @@ let archive_fmt = if stdenv.isDarwin then "zip" else "tar.gz"; sha256 = { - x86_64-linux = "0f5l720gc47dygbk7mahx7pb088a8bfrnf69j3igvczbnfapx5sy"; - x86_64-darwin = "0qmji8bfnqvrxv4yk3rscvns1hk5wfwwdng8jblh5bilf657g1fc"; - aarch64-linux = "0qcmcsb97q303izhw8k4242nsb72my1vnf24hsfml4vr76f5qqbd"; - aarch64-darwin = "1cc8p5s8vr5bml715yx2lzkqa9q85rziswrhl1d11zagymvswjzn"; - armv7l-linux = "086c3wazjk30f8r8dgi0bjsvzcc6sa9d80cy4500pim7rb7s6ppn"; + x86_64-linux = "0xdj5v2n34d6p49ng13qr9d4yyyvqr96qv15la2fda9s7n1s659c"; + x86_64-darwin = "0jgrf534qy39nki0rfc8lrdbdb8ghzarckd3cx9fzq6bw1p2jy1f"; + aarch64-linux = "133577j6i709dq4ircnh2yklylcmy0kgs6lhly7mx8nrag8qi9c1"; + aarch64-darwin = "18346igq8b1d0kywy9alvzm0glb46aalznnhr5mql5rhaana92xw"; + armv7l-linux = "0l0wvgi981ryqbhyh5qalr8lasyf3pg4pzqs9f9hc75ppk4d6sny"; }.${system} or throwSystem; in callPackage ./generic.nix rec { # Please backport all compatible updates to the stable release. # This is important for the extension ecosystem. - version = "1.74.1"; + version = "1.74.2"; pname = "vscode"; executableName = "code" + lib.optionalString isInsiders "-insiders"; diff --git a/third_party/nixpkgs/pkgs/applications/editors/vscode/vscodium.nix b/third_party/nixpkgs/pkgs/applications/editors/vscode/vscodium.nix index 19d6564614..a9e14f0bfc 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/vscode/vscodium.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/vscode/vscodium.nix @@ -15,11 +15,11 @@ let archive_fmt = if stdenv.isDarwin then "zip" else "tar.gz"; sha256 = { - x86_64-linux = "07njvkgashg9mbkdf7cw40xdxh08qs8gbgh24gdznvs397bvk2jk"; - x86_64-darwin = "155f7rbyb413igvxddrrad0y1s7i9rfldm6d9fvbyz6p8nzyqfvh"; - aarch64-linux = "08wz44js381hjlnpssd09i2xz9min603n7a5v3x2sah4z9vi220d"; - aarch64-darwin = "0ikw0kcbvjwn6b0ac5zfp0shavay31yfhn000xrw9il3py741x7k"; - armv7l-linux = "1pvybhaf96ayjl832vz9c0y2m07mb5a16c2hr13l0vw52sbl30md"; + x86_64-linux = "0xbwx218dzf9nyjf531sb9ij0p8lz08yi09yz8dms07qcsfirac0"; + x86_64-darwin = "028i7cbh43ivz5amx015v0d87kh4jj54b3ndirxl57py2gxszy0x"; + aarch64-linux = "1rg67sfp3abpcxrl89db6x3a41la63xinl4kjin8v08w5iprrm0n"; + aarch64-darwin = "0zm057rvabd29ay88l0h40adrc71p9cjvml34aci58klaqd2if0q"; + armv7l-linux = "0amxgq98gifcjr9wfx8ddcjqkb1b6pr5q3dwfdbyynksqqd4hrxv"; }.${system} or throwSystem; sourceRoot = if stdenv.isDarwin then "" else "."; @@ -29,7 +29,7 @@ in # Please backport all compatible updates to the stable release. # This is important for the extension ecosystem. - version = "1.74.1.22349"; + version = "1.74.2.22355"; pname = "vscodium"; executableName = "codium"; diff --git a/third_party/nixpkgs/pkgs/applications/editors/yi/wrapper.nix b/third_party/nixpkgs/pkgs/applications/editors/yi/wrapper.nix index a7456590ab..356a04b36e 100644 --- a/third_party/nixpkgs/pkgs/applications/editors/yi/wrapper.nix +++ b/third_party/nixpkgs/pkgs/applications/editors/yi/wrapper.nix @@ -28,6 +28,10 @@ stdenv.mkDerivation { # This wrapper and wrapper only is under PD license = licenses.publicDomain; maintainers = with maintainers; [ ]; + + # dependency yi-language no longer builds + hydraPlatforms = lib.platforms.none; + broken = true; }; } diff --git a/third_party/nixpkgs/pkgs/applications/emulators/bsnes/ares/002-sips-to-png2icns.patch b/third_party/nixpkgs/pkgs/applications/emulators/bsnes/ares/002-sips-to-png2icns.patch new file mode 100644 index 0000000000..4c2259d63a --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/emulators/bsnes/ares/002-sips-to-png2icns.patch @@ -0,0 +1,39 @@ +diff --git a/desktop-ui/GNUmakefile b/desktop-ui/GNUmakefile +index 4515610d3..916c8fcd8 100644 +--- a/desktop-ui/GNUmakefile ++++ b/desktop-ui/GNUmakefile +@@ -91,7 +91,7 @@ endif + cp resource/$(name).plist $(output.path)/$(name).app/Contents/Info.plist + cp -R $(ares.path)/Shaders $(output.path)/$(name).app/Contents/Resources/ + cp -R $(mia.path)/Database $(output.path)/$(name).app/Contents/Resources/ +- sips -s format icns resource/$(name).png --out $(output.path)/$(name).app/Contents/Resources/$(name).icns ++ png2icns $(output.path)/$(name).app/Contents/Resources/$(name).icns resource/$(name).png + codesign --force --deep --options runtime --entitlements resource/$(name).selfsigned.entitlements --sign - $(output.path)/$(name).app + else ifeq ($(platform),windows) + $(call mkdir,$(output.path)/Shaders/) +diff --git a/genius/GNUmakefile b/genius/GNUmakefile +index 5287309a8..8d80f9306 100644 +--- a/genius/GNUmakefile ++++ b/genius/GNUmakefile +@@ -24,7 +24,7 @@ ifeq ($(platform),macos) + mkdir -p $(output.path)/$(name).app/Contents/Resources/ + mv $(output.path)/$(name) $(output.path)/$(name).app/Contents/MacOS/$(name) + cp data/$(name).plist $(output.path)/$(name).app/Contents/Info.plist +- sips -s format icns data/$(name).png --$(output.path) $(output.path)/$(name).app/Contents/Resources/$(name).icns ++ png2icns $(output.path)/$(name).app/Contents/Resources/$(name).icns data/$(name).png + endif + + verbose: hiro.verbose nall.verbose all; +diff --git a/mia/GNUmakefile b/mia/GNUmakefile +index b6930b6df..7a51b5028 100644 +--- a/mia/GNUmakefile ++++ b/mia/GNUmakefile +@@ -32,7 +32,7 @@ ifeq ($(platform),macos) + mkdir -p $(output.path)/$(name).app/Contents/Resources/ + mv $(output.path)/$(name) $(output.path)/$(name).app/Contents/MacOS/$(name) + cp resource/$(name).plist $(output.path)/$(name).app/Contents/Info.plist +- sips -s format icns resource/$(name).png --out $(output.path)/$(name).app/Contents/Resources/$(name).icns ++ png2icns $(output.path)/$(name).app/Contents/Resources/$(name).icns resource/$(name).png + endif + + verbose: hiro.verbose nall.verbose all; diff --git a/third_party/nixpkgs/pkgs/applications/emulators/bsnes/ares/003-fix-darwin-install.patch b/third_party/nixpkgs/pkgs/applications/emulators/bsnes/ares/003-fix-darwin-install.patch new file mode 100644 index 0000000000..5b216ac267 --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/emulators/bsnes/ares/003-fix-darwin-install.patch @@ -0,0 +1,23 @@ +diff --git a/desktop-ui/GNUmakefile b/desktop-ui/GNUmakefile +index 916c8fcd8..b767c1335 100644 +--- a/desktop-ui/GNUmakefile ++++ b/desktop-ui/GNUmakefile +@@ -92,7 +92,6 @@ endif + cp -R $(ares.path)/Shaders $(output.path)/$(name).app/Contents/Resources/ + cp -R $(mia.path)/Database $(output.path)/$(name).app/Contents/Resources/ + png2icns $(output.path)/$(name).app/Contents/Resources/$(name).icns resource/$(name).png +- codesign --force --deep --options runtime --entitlements resource/$(name).selfsigned.entitlements --sign - $(output.path)/$(name).app + else ifeq ($(platform),windows) + $(call mkdir,$(output.path)/Shaders/) + $(call mkdir,$(output.path)/Database/) +@@ -115,8 +114,8 @@ ifeq ($(platform),windows) + else ifeq ($(shell id -un),root) + $(error "make install should not be run as root") + else ifeq ($(platform),macos) +- mkdir -p ~/Library/Application\ Support/$(name)/ +- cp -R $(output.path)/$(name).app /Applications/$(name).app ++ mkdir -p $(prefix)/Applications/ ++ cp -R $(output.path)/$(name).app $(prefix)/Applications/$(name).app + else ifneq ($(filter $(platform),linux bsd),) + mkdir -p $(prefix)/bin/ + mkdir -p $(prefix)/share/applications/ diff --git a/third_party/nixpkgs/pkgs/applications/emulators/bsnes/ares/default.nix b/third_party/nixpkgs/pkgs/applications/emulators/bsnes/ares/default.nix index 7a6dae5784..78afd4db38 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/bsnes/ares/default.nix +++ b/third_party/nixpkgs/pkgs/applications/emulators/bsnes/ares/default.nix @@ -3,6 +3,7 @@ , fetchFromGitHub , pkg-config , wrapGAppsHook +, libicns , SDL2 , alsa-lib , gtk3 @@ -15,8 +16,12 @@ , libpulseaudio , openal , udev +, darwin }: +let + inherit (darwin.apple_sdk_11_0.frameworks) Cocoa OpenAL; +in stdenv.mkDerivation (finalAttrs: { pname = "ares"; version = "130.1"; @@ -31,15 +36,21 @@ stdenv.mkDerivation (finalAttrs: { patches = [ ./000-dont-rebuild-on-install.patch ./001-fix-ruby.patch + ./002-sips-to-png2icns.patch + ./003-fix-darwin-install.patch ]; nativeBuildInputs = [ pkg-config wrapGAppsHook + ] ++ lib.optionals stdenv.isDarwin [ + libicns ]; buildInputs = [ SDL2 + libao + ] ++ lib.optionals stdenv.isLinux [ alsa-lib gtk3 gtksourceview3 @@ -47,29 +58,36 @@ stdenv.mkDerivation (finalAttrs: { libGLU libX11 libXv - libao libpulseaudio openal udev + ] ++ lib.optionals stdenv.isDarwin [ + Cocoa + OpenAL ]; enableParallelBuilding = true; - makeFlags = [ + makeFlags = lib.optionals stdenv.isLinux [ "hiro=gtk3" + ] ++ lib.optionals stdenv.isDarwin [ + "hiro=cocoa" + "vulkan=false" + ] ++ [ "local=false" "openmp=true" "prefix=$(out)" "-C desktop-ui" ]; + NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isDarwin "-mmacosx-version-min=10.14"; + meta = with lib; { homepage = "https://ares-emu.net"; description = "Open-source multi-system emulator with a focus on accuracy and preservation"; license = licenses.isc; maintainers = with maintainers; [ Madouura AndersonTorres ]; - platforms = platforms.linux; + platforms = platforms.unix; }; }) # TODO: select between Qt, GTK2 and GTK3 -# TODO: support Darwin diff --git a/third_party/nixpkgs/pkgs/applications/emulators/bsnes/bsnes-hd/default.nix b/third_party/nixpkgs/pkgs/applications/emulators/bsnes/bsnes-hd/default.nix index 6410189699..b6d158a7a7 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/bsnes/bsnes-hd/default.nix +++ b/third_party/nixpkgs/pkgs/applications/emulators/bsnes/bsnes-hd/default.nix @@ -6,9 +6,12 @@ , SDL2 , gtk3, gtksourceview3 , alsa-lib, libao, openal, libpulseaudio -, libicns, Cocoa, OpenAL +, libicns, makeWrapper, darwin }: +let + inherit (darwin.apple_sdk_11_0.frameworks) Cocoa OpenAL; +in stdenv.mkDerivation { pname = "bsnes-hd"; version = "10.6-beta"; @@ -35,8 +38,9 @@ stdenv.mkDerivation { ./macos-copy-app-to-prefix.patch ]; - nativeBuildInputs = [ pkg-config wrapGAppsHook ] - ++ lib.optionals stdenv.isDarwin [ libicns ]; + nativeBuildInputs = [ pkg-config ] + ++ lib.optionals stdenv.isLinux [ wrapGAppsHook ] + ++ lib.optionals stdenv.isDarwin [ libicns makeWrapper ]; buildInputs = [ SDL2 libao ] ++ lib.optionals stdenv.isLinux [ libX11 libXv udev gtk3 gtksourceview3 alsa-lib openal libpulseaudio ] @@ -44,10 +48,17 @@ stdenv.mkDerivation { enableParallelBuilding = true; - makeFlags = [ "-C" "bsnes" "hiro=gtk3" "prefix=$(out)" ]; + makeFlags = [ "-C" "bsnes" "prefix=$(out)" ] + ++ lib.optionals stdenv.isLinux [ "hiro=gtk3" ] + ++ lib.optionals stdenv.isDarwin [ "hiro=cocoa" ]; + + postInstall = lib.optionalString stdenv.isDarwin '' + mkdir -p $out/bin + makeWrapper $out/{Applications/bsnes.app/Contents/MacOS,bin}/bsnes + ''; # https://github.com/bsnes-emu/bsnes/issues/107 - preFixup = '' + preFixup = lib.optionalString stdenv.isLinux '' gappsWrapperArgs+=( --prefix GDK_BACKEND : x11 ) @@ -59,9 +70,6 @@ stdenv.mkDerivation { license = licenses.gpl3Only; maintainers = with maintainers; [ stevebob ]; platforms = platforms.unix; - # ../nall/traits.hpp:19:14: error: no member named 'is_floating_point_v' in namespace 'std'; did you mean 'is_floating_point'? - # using std::is_floating_point_v; - broken = (stdenv.isDarwin && stdenv.isx86_64); mainProgram = "bsnes"; }; } diff --git a/third_party/nixpkgs/pkgs/applications/emulators/cemu/default.nix b/third_party/nixpkgs/pkgs/applications/emulators/cemu/default.nix index d2c325280e..f8e5855012 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/cemu/default.nix +++ b/third_party/nixpkgs/pkgs/applications/emulators/cemu/default.nix @@ -20,21 +20,24 @@ , pugixml , rapidjson , vulkan-headers +, wayland , wxGTK32 , zarchive , vulkan-loader + +, nix-update-script }: stdenv.mkDerivation rec { pname = "cemu"; - version = "2.0-17"; + version = "2.0-22"; src = fetchFromGitHub { owner = "cemu-project"; repo = "Cemu"; rev = "v${version}"; - hash = "sha256-ryFph55o7s3eiqQ8kx5+3Et5S2U9H5i3fmZTc1CaCnA="; + hash = "sha256-ZQfJHQnT5mV6GC3dO6QV1fGsnyZMYqXiVdBSsimL5yU="; }; patches = [ @@ -68,6 +71,7 @@ stdenv.mkDerivation rec { pugixml rapidjson vulkan-headers + wayland wxGTK32 zarchive ]; @@ -108,13 +112,11 @@ stdenv.mkDerivation rec { in '' gappsWrapperArgs+=( --prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath libs}" - - # Force X11 to be used until Wayland is natively supported - # - --set GDK_BACKEND x11 ) ''; + passthru.updateScript = nix-update-script { }; + meta = with lib; { description = "Cemu is a Wii U emulator"; homepage = "https://cemu.info"; diff --git a/third_party/nixpkgs/pkgs/applications/emulators/citra/update.sh b/third_party/nixpkgs/pkgs/applications/emulators/citra/update.sh index eec36818fe..e9150e34e0 100755 --- a/third_party/nixpkgs/pkgs/applications/emulators/citra/update.sh +++ b/third_party/nixpkgs/pkgs/applications/emulators/citra/update.sh @@ -27,7 +27,7 @@ updateNightly() { OLD_NIGHTLY_VERSION="$(getLocalVersion "citra-nightly")" OLD_NIGHTLY_HASH="$(getLocalHash "citra-nightly")" - NEW_NIGHTLY_VERSION="$(curl -s ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} \ + NEW_NIGHTLY_VERSION="$(curl -s ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} \ "https://api.github.com/repos/citra-emu/citra-nightly/releases?per_page=1" | jq -r '.[0].name' | cut -d"-" -f2 | cut -d" " -f2)" if [[ "${OLD_NIGHTLY_VERSION}" = "${NEW_NIGHTLY_VERSION}" ]]; then @@ -42,7 +42,7 @@ updateNightly() { NEW_NIGHTLY_HASH="$(nix-prefetch-git --quiet --fetch-submodules --rev "nightly-${NEW_NIGHTLY_VERSION}" "https://github.com/citra-emu/citra-nightly" | jq -r '.sha256')" - echo " Succesfully fetched. hash: ${NEW_NIGHTLY_HASH}" + echo " Successfully fetched. hash: ${NEW_NIGHTLY_HASH}" sed -i "s/${OLD_NIGHTLY_VERSION}/${NEW_NIGHTLY_VERSION}/" ./default.nix sed -i "s/${OLD_NIGHTLY_HASH}/${NEW_NIGHTLY_HASH}/" ./default.nix @@ -52,7 +52,7 @@ updateCanary() { OLD_CANARY_VERSION="$(getLocalVersion "citra-canary")" OLD_CANARY_HASH="$(getLocalHash "citra-canary")" - NEW_CANARY_VERSION="$(curl -s ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} \ + NEW_CANARY_VERSION="$(curl -s ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} \ "https://api.github.com/repos/citra-emu/citra-canary/releases?per_page=1" | jq -r '.[0].name' | cut -d"-" -f2 | cut -d" " -f1)" if [[ "${OLD_CANARY_VERSION}" = "${NEW_CANARY_VERSION}" ]]; then @@ -67,7 +67,7 @@ updateCanary() { NEW_CANARY_HASH="$(nix-prefetch-git --quiet --fetch-submodules --rev "canary-${NEW_CANARY_VERSION}" "https://github.com/citra-emu/citra-canary" | jq -r '.sha256')" - echo " Succesfully fetched. hash: ${NEW_CANARY_HASH}" + echo " Successfully fetched. hash: ${NEW_CANARY_HASH}" sed -i "s/${OLD_CANARY_VERSION}/${NEW_CANARY_VERSION}/" ./default.nix sed -i "s/${OLD_CANARY_HASH}/${NEW_CANARY_HASH}/" ./default.nix diff --git a/third_party/nixpkgs/pkgs/applications/emulators/ppsspp/default.nix b/third_party/nixpkgs/pkgs/applications/emulators/ppsspp/default.nix index 2d1f583d74..1d3e0bb126 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/ppsspp/default.nix +++ b/third_party/nixpkgs/pkgs/applications/emulators/ppsspp/default.nix @@ -38,14 +38,14 @@ in + lib.optionalString enableQt "-qt" + lib.optionalString (!enableQt) "-sdl" + lib.optionalString forceWayland "-wayland"; - version = "1.13.2"; + version = "1.14.1"; src = fetchFromGitHub { owner = "hrydgard"; repo = "ppsspp"; rev = "v${finalAttrs.version}"; fetchSubmodules = true; - sha256 = "sha256-Ubbl2KCZ4QlWDtTxl4my0nKNGY25DOkD/iEurzVx4gU="; + sha256 = "sha256-WGTPd3xcFk4E/Wf+DEv4pzGYf0dppzV3vUTwrYmZ2YM="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/applications/emulators/punes/default.nix b/third_party/nixpkgs/pkgs/applications/emulators/punes/default.nix index dba83f4130..b68b70c0ac 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/punes/default.nix +++ b/third_party/nixpkgs/pkgs/applications/emulators/punes/default.nix @@ -50,9 +50,7 @@ mkDerivation rec { "--with-ffmpeg" ]; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "Qt-based Nintendo Entertainment System emulator and NSF/NSFe Music Player"; diff --git a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/cores.nix b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/cores.nix index 1bcd1d8c5f..c72ff4929b 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/cores.nix +++ b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/cores.nix @@ -49,7 +49,7 @@ let mkLibretroCore = { core , src ? (getCoreSrc core) - , version ? "unstable-2022-11-21" + , version ? "unstable-2022-12-20" , ... }@args: import ./mkLibretroCore.nix ({ diff --git a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/default.nix b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/default.nix index c2c752f054..5c18d47daa 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/default.nix +++ b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/default.nix @@ -2,12 +2,15 @@ , stdenv , nixosTests , enableNvidiaCgToolkit ? false +, withAssets ? false +, withCoreInfo ? false , withGamemode ? stdenv.isLinux , withVulkan ? stdenv.isLinux , withWayland ? stdenv.isLinux , alsa-lib , dbus , fetchFromGitHub +, fetchpatch , ffmpeg_4 , flac , freetype @@ -25,11 +28,12 @@ , libxml2 , libXxf86vm , makeWrapper -, mbedtls +, mbedtls_2 , mesa , nvidia_cg_toolkit , pkg-config , python3 +, retroarch-assets , SDL2 , substituteAll , udev @@ -45,19 +49,25 @@ let in stdenv.mkDerivation rec { pname = "retroarch-bare"; - version = "1.13.0"; + version = "1.14.0"; src = fetchFromGitHub { owner = "libretro"; repo = "RetroArch"; - hash = "sha256-eEe0mM9gUWgEzoRH1Iuet20US9eXNtCVSBi2kX1njVw="; + hash = "sha256-oEENGehbzjJq1kTiz6gkXHMMe/rXjWPxxMoe4RqdqK4="; rev = "v${version}"; }; patches = [ - (substituteAll { - src = ./use-fixed-path-for-libretro_core_info.patch; - libretro_info_path = libretro-core-info; + ./use-default-values-for-libretro_info_path-assets_directory.patch + # TODO: remove those two patches in the next RetroArch release + (fetchpatch { + url = "https://github.com/libretro/RetroArch/commit/894c44c5ea7f1eada9207be3c29e8d5c0a7a9e1f.patch"; + hash = "sha256-ThB6jd9pmsipT8zjehz7znK/s0ofHHCJeEYBKur6sO8="; + }) + (fetchpatch { + url = "https://github.com/libretro/RetroArch/commit/c5bfd52159cf97312bb28fc42203c39418d1bbbd.patch"; + hash = "sha256-rb1maAvCSUgq2VtJ67iqUY+Fz00Fchl8YGG0EPm0+F0="; }) ]; @@ -72,7 +82,7 @@ stdenv.mkDerivation rec { libGL libGLU libxml2 - mbedtls + mbedtls_2 python3 SDL2 zlib @@ -100,9 +110,18 @@ stdenv.mkDerivation rec { configureFlags = [ "--disable-update_cores" "--disable-builtinmbedtls" + "--enable-systemmbedtls" "--disable-builtinzlib" "--disable-builtinflac" ] ++ + lib.optionals withAssets [ + "--disable-update_assets" + "--with-assets_dir=${retroarch-assets}/share" + ] ++ + lib.optionals withCoreInfo [ + "--disable-update_core_info" + "--with-core_info_dir=${libretro-core-info}/share" + ] ++ lib.optionals stdenv.isLinux [ "--enable-dbus" "--enable-egl" @@ -112,9 +131,16 @@ stdenv.mkDerivation rec { postInstall = lib.optionalString (runtimeLibs != [ ]) '' wrapProgram $out/bin/retroarch \ --prefix LD_LIBRARY_PATH ':' ${lib.makeLibraryPath runtimeLibs} + '' + + lib.optionalString enableNvidiaCgToolkit '' + wrapProgram $out/bin/retroarch-cg2glsl \ + --prefix PATH ':' ${lib.makeBinPath [ nvidia_cg_toolkit ]} ''; - preFixup = "rm $out/bin/retroarch-cg2glsl"; + preFixup = lib.optionalString (!enableNvidiaCgToolkit) '' + rm $out/bin/retroarch-cg2glsl + rm $out/share/man/man6/retroarch-cg2glsl.6* + ''; passthru.tests = nixosTests.retroarch; diff --git a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/hashes.json b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/hashes.json index 6d9ae4da53..e4198184ed 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/hashes.json +++ b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/hashes.json @@ -14,8 +14,8 @@ "beetle-lynx": { "owner": "libretro", "repo": "beetle-lynx-libretro", - "rev": "3d2fcc5a555bea748b76f92a082c40227dff8222", - "sha256": "PpFLi9DIvv8igtAqDPkLfH1CjkbeOumcpNCP7K9C1PY=" + "rev": "9c48124dc15604b3eb6892e3616dfb77992a6fd6", + "sha256": "ZXFU4QmjVQVU5bE5TVmGm4gepZpuoS8+p60l+Ha4I9s=" }, "beetle-ngp": { "owner": "libretro", @@ -26,26 +26,26 @@ "beetle-pce-fast": { "owner": "libretro", "repo": "beetle-pce-fast-libretro", - "rev": "cc248db4d2f47d0f255fbc1a3c651df4beb3d835", - "sha256": "euoNldhyEPfC9EgEX201mpSjns2qbCIAow0zmMKTnaE=" + "rev": "d4fa4480f17f067c3aba25380717a5aee059f026", + "sha256": "t7OJuqEWec3GvNq9dsmrRhgz+GybBzt1ZO6FwZ9L5yE=" }, "beetle-pcfx": { "owner": "libretro", "repo": "beetle-pcfx-libretro", - "rev": "08632fcbc039f70dbd6da5810db9dcc304d7fbde", - "sha256": "G+OUs6k8dwH4BK+0X/g47wbY7Dpb3lT5TslLwPWq6g4=" + "rev": "af16dfd8353ed6cf76ef381b98a6a9abf59051ec", + "sha256": "snAA5PCU2NRsCiQtBRYEzczPSGG9OT2jDTrGaPZqhic=" }, "beetle-psx": { "owner": "libretro", "repo": "beetle-psx-libretro", - "rev": "798fab9d5bc82dde26442d9b4861d377d4689e31", - "sha256": "wHCUSMdPbIudmNm4XXW/zH6TDz7x9DrMNV/L8H3aO/w=" + "rev": "3827fb4bd0d36f0db7b59e0c220524c7daaf0430", + "sha256": "CGNzb6XDPsp+EitkgyvDha9DoZSy+e9JWye0nmCiOns=" }, "beetle-saturn": { "owner": "libretro", "repo": "beetle-saturn-libretro", - "rev": "054862a4ccb9b2f1bad9e5b075fc3d1116dc8055", - "sha256": "oL9YPvDGkUs0Tm/rNznnV+Tg5mcvqs1VcGVmz/fDHmw=" + "rev": "19ce186783174b93b90845c3f0e1fa1694904912", + "sha256": "mEuv9lrDi/q2ASV9hxYptievupcv4PfUWPYlDcNzXQg=" }, "beetle-snes": { "owner": "libretro", @@ -56,26 +56,26 @@ "beetle-supafaust": { "owner": "libretro", "repo": "supafaust", - "rev": "85b5527231a6ad6f9475c15c8ff1b9d16884cd30", - "sha256": "6ynxRfGYlp7Fuq3XT2uHsR9Uwu7WMIYjclLc0Pf/qNM=" + "rev": "75c658cce454e58ae04ea252f53a31c60d61548e", + "sha256": "2fXarVfb5/SYXF8t25/fGNFvODpGas5Bi0hLIbXgB+0=" }, "beetle-supergrafx": { "owner": "libretro", "repo": "beetle-supergrafx-libretro", - "rev": "3cfafe8c684a2f4f4532bcf18e25d2f8760ca45d", - "sha256": "hIBUMpXgX5zPi/W1vAhkuxprGfZQ/K5ZrtiswV36EMQ=" + "rev": "787772dff157c8fe54b2e16bb770f2c344c8932b", + "sha256": "i4SnjIqA0U88FnaT7fz5fqMyp8FyfNvxxhflOaAv1mA=" }, "beetle-vb": { "owner": "libretro", "repo": "beetle-vb-libretro", - "rev": "162918f06d9a705330b2ba128e0d3b65fd1a1bcc", - "sha256": "BtrdDob+B5g8Lq93LUhF7E0uWFUIMZneWFgH0VcsgPE=" + "rev": "3e845666d7ce235a071eb306e94074f1a72633bf", + "sha256": "ukKzG+O2o6EAF0l7cmMQOkemJ1oweIpRH5rle1gqaFk=" }, "beetle-wswan": { "owner": "libretro", "repo": "beetle-wswan-libretro", - "rev": "16d96f64a32cbe1fa89c40b142298dbd007f2f4d", - "sha256": "LBtOQfVvP70OB6qMnFXtWdJUu7CkkMfSQ0iPGhe7xeI=" + "rev": "cccee4217e53e164fd70196e56dfb24b967e5fd8", + "sha256": "RpGYQwDWkfYY0qnrTuAMzVuOSfTX5AZph7FD8ijUggc=" }, "blastem": { "owner": "libretro", @@ -92,8 +92,8 @@ "bsnes": { "owner": "libretro", "repo": "bsnes-libretro", - "rev": "7679cb9618c37c9044158d5cf3da28ef25afa9af", - "sha256": "9ozzXvCAuafcZn9iq91tTq16e2mlYqjwauJUGSbFd+k=" + "rev": "dabf6679024124b2f819c79f279dbb85a5263255", + "sha256": "iv8gxC48i8JMzby3vR4eYDViqCwSf8JGlPekQE6AF4c=" }, "bsnes-hd": { "owner": "DerKoun", @@ -110,8 +110,8 @@ "citra": { "owner": "libretro", "repo": "citra", - "rev": "70bf7d8a63b0b501e8f5cff89a86a3e2d4083aa0", - "sha256": "uHWROH6/ZAZygkhEQGNyllncCp2XDCdYwy/CKgGKAcM=", + "rev": "f0b09a5c0cb3767d43f5f8ca12a783012298fd44", + "sha256": "v86R5TLmNNMhuTMCwU3mAAtLK5H0sP//soh4x+cFgTQ=", "fetchSubmodules": true }, "desmume": { @@ -129,8 +129,8 @@ "dolphin": { "owner": "libretro", "repo": "dolphin", - "rev": "a8188dbc4e63d6c0867ed2196f5125130955f012", - "sha256": "gf9OjeDazDPDnQ9S2+hV4CNxPAkCCaEhJDZF97a1//U=" + "rev": "2f4b0f7902257d40a054f60b2c670d6e314f2a04", + "sha256": "9WYWbLehExYbPmGJpguhVFXqFJ9aR6VxzFVChd4QOEg=" }, "dosbox": { "owner": "libretro", @@ -153,8 +153,8 @@ "fbneo": { "owner": "libretro", "repo": "fbneo", - "rev": "a12455af75e60765da134b83051700e0fbe3803a", - "sha256": "ujO9KVn7o6xueeEr5GHfOy7NimwNIvYxgMM9xJvtjvo=" + "rev": "ef17049274a21239e5f21198b026dacbb38d7b90", + "sha256": "2N7c5L9grp+Rkhj25SoB9K9rVHq4H9IzU2KSeb1O7/E=" }, "fceumm": { "owner": "libretro", @@ -189,8 +189,8 @@ "genesis-plus-gx": { "owner": "libretro", "repo": "Genesis-Plus-GX", - "rev": "3abf975785fe77267a399cc583ccf1469e081b86", - "sha256": "QdiWKS7j80Sw0L+hf6efmQ40lQi/f95pFLQfoohoUKg=" + "rev": "74a2f6521aea975a51f99497b57c5db500d61ed9", + "sha256": "qTNbFXg5QFKSzMOWhDdDfc0FinF/D7n2OruG5zv+ANY=" }, "gpsp": { "owner": "libretro", @@ -219,8 +219,8 @@ "mame": { "owner": "libretro", "repo": "mame", - "rev": "57622367cb780013690d6ef23b2066b500f6ce92", - "sha256": "0iR1JGAhwYXXLnv8BDW1bsxfFywEI82aov2+MHw5w6Q=" + "rev": "85581d60bb24fea14542b154aef2c7b624f5b60f", + "sha256": "AUqJAXJCvddv9vPqXt5EZncKNdeLaXoc6xhYWqOMebY=" }, "mame2000": { "owner": "libretro", @@ -231,14 +231,14 @@ "mame2003": { "owner": "libretro", "repo": "mame2003-libretro", - "rev": "dbdda8e7189d63061ac42f502c0cd2dc7f1f8651", - "sha256": "XED/gunYOc+NnQ8YORw/ALP2eCTyvRdIxPiFpNf5nuA=" + "rev": "b1cc49cf1d8bbef88b890e1c2a315a39d009171b", + "sha256": "bc4uER92gHf20JjR/Qcetvlu89ZmldJ1DiQphJZt/EA=" }, "mame2003-plus": { "owner": "libretro", "repo": "mame2003-plus-libretro", - "rev": "5dd4a30500edc0b00c712750093aa287c9bb4ce2", - "sha256": "Nvm5U6rpsDZdUJONtvZ6YmztuupLaXz2QT0SBJtzO/4=" + "rev": "3249de7ceaaa92ee18e93cbd8c2ace9f1ee34c08", + "sha256": "mBF1j4em4e/fKEmPA8MmAZrXXYQiqFfAloOHdMbVq+k=" }, "mame2010": { "owner": "libretro", @@ -261,14 +261,14 @@ "melonds": { "owner": "libretro", "repo": "melonds", - "rev": "5e52c245fb38cabe881fbfa6513280ee44fc5bd8", - "sha256": "jWBZ5wg1dKEgoEV09VTGJ+I4+8uiivAHhpTiD9tPaYg=" + "rev": "0e1f06da626cbe67215c3f06f6bdf510dd4e4649", + "sha256": "ax9Vu8+1pNAHWPXrx5QA0n5EsmaJ2T7KJ5Otz8DSZwM=" }, "mesen": { "owner": "libretro", "repo": "mesen", - "rev": "9b412c1533a6d7eec7b2904775cbd26c21f02119", - "sha256": "Tf+lWfSU7AuW6Um5TXkWNAeg35W08YkYQwW0Yx3iNTM=" + "rev": "c89474c9d87df967d21b7b7d5971dc9475fec028", + "sha256": "cnPNBWXbnCpjgW/wJIboiRBzv3zrHWxpNM1kg09ShLU=" }, "mesen-s": { "owner": "libretro", @@ -291,20 +291,20 @@ "mupen64plus": { "owner": "libretro", "repo": "mupen64plus-libretro-nx", - "rev": "1b67122ff6a923c93a56ff94273e3768a6da5dff", - "sha256": "qORxhy7hXVdGUkQumOmGVXnF1kW0BShMNBVlaRu3a1w=" + "rev": "bc241538b9ef85d8b22c392d7699dc73f460e283", + "sha256": "eCosI2yL1HJpHWvZLYZQe6+1rmmyHLFYCY7bX+3hPec=" }, "neocd": { "owner": "libretro", "repo": "neocd_libretro", - "rev": "b7d96e794f2dfa500cba46c78cbc3c28349cfd05", - "sha256": "TG5xIqIM0MlHDNtPhyISqo/ctTqemKROwXgoqUsCQ0E=" + "rev": "53f5453311a1ac43700fedb2317c810586f9ccf5", + "sha256": "BZBpojShHk+j5wz/d7FnykpX562TgH6PAqTUigE+zUU=" }, "nestopia": { "owner": "libretro", "repo": "nestopia", - "rev": "5c360e55d5437ecd3520568ee44cf1af63d4696a", - "sha256": "+1QQc4gVZ5ZHt/I0bjRkW+kbPaeGUNrjbrzUoVz4drM=" + "rev": "d30c55052292826836f6dbaa2adc46fdf1a2d93c", + "sha256": "R2Kbtr2EqNUyx5eGBYyyw/ugSxVRM70TP/IsIsU0EZM=" }, "np2kai": { "owner": "AZO234", @@ -340,34 +340,34 @@ "pcsx2": { "owner": "libretro", "repo": "pcsx2", - "rev": "ad7650949e6c8c87cd2c5e278af88e3722a321bc", - "sha256": "iqXCW28werxbZNo1hlDLiD3ywSZ9hvWmxwGPJ5bRZ+w=" + "rev": "d2e37b80cfe6f6eecfe0356c7537d8e98bee7a8d", + "sha256": "rHXJG2wGoyNGvxxeZVF/I1CpaSBPUwZNERJtkG/z7MU=" }, "pcsx_rearmed": { "owner": "libretro", "repo": "pcsx_rearmed", - "rev": "a4e249a1373cf6269e1e4e0d60105e72210e67d3", - "sha256": "NOz2NQonVWEhEhAgSFHSWv6bmuTPcw0R9ihISlGwkb0=" + "rev": "aced3eb3fcaa0fe13c44c4dd196cdab42555fd98", + "sha256": "RzcrSADagi3AIPINQxc36BfMjWjatP/JL6HY744XnZk=" }, "picodrive": { "owner": "libretro", "repo": "picodrive", - "rev": "0a4ec83cbfaebb65fb1c40f26ffaf28131f9003b", - "sha256": "NOMQoDmXGrxrquAcSLo6Otcz8bH4gnhqcG/zzet3Dtk=", + "rev": "62873cab5366999207c197e9f55987daee10be4a", + "sha256": "YErmanNczeh6BeanCGllwOoTjXO+9At8l/o4UhIek4o=", "fetchSubmodules": true }, "play": { "owner": "jpd002", "repo": "Play-", - "rev": "ad3b855c6d8cc62c85e2a5d2f659159fdfaa8d80", - "sha256": "+uTf/xv2JHuNGx0bxFNXf0akRzonzRMT7gSvT2n12+o=", + "rev": "0483fc43da01b5b29883acb2cf1d02d33bba1e30", + "sha256": "OxBQFTQP0L8k0lH88Ey6KWybW912Ehsv7XjWrvFivxo=", "fetchSubmodules": true }, "ppsspp": { "owner": "hrydgard", "repo": "ppsspp", - "rev": "e654f6937a02f4a2ac8cce3574ab4f2db99f77d4", - "sha256": "LTqRA3KMV/VuQH0eTWjpOqy0U944c4ofPNEsexf93Kc=", + "rev": "1fa2f7a97191d2a73f243bfc464edef69b26f652", + "sha256": "BDX2eHtFbsloC9XYORHwpix8tbRSQUbcoP7DKFIohW4=", "fetchSubmodules": true }, "prboom": { @@ -385,8 +385,8 @@ "puae": { "owner": "libretro", "repo": "libretro-uae", - "rev": "d9a8dfbde7f6967fea3cffe09cd87e1d79a1a3fd", - "sha256": "uMn9ejknjwGmbc0JOu/xl30z3ff7vpxtA3qr2sv0glI=" + "rev": "af9e35383c00980aabb38c929e679704b624dee0", + "sha256": "hp4XOQUKktmUfLtRfVv1Oe1vqHUYu+vagxSSef55APs=" }, "quicknes": { "owner": "libretro", @@ -439,8 +439,8 @@ "stella": { "owner": "stella-emu", "repo": "stella", - "rev": "fa49e034101a22344c7bd01648d514b6cc61ac7f", - "sha256": "Svv+j7/9PvZ6djk2kfpbr9iUC8xqX8B4Plnf43Hj62A=" + "rev": "82da36dd685c68b09047d7c835175879edb68653", + "sha256": "y7AOSY2VUe4Jv+wteplvA1ul5iXHoeYQhgycD+nfIuc=" }, "stella2014": { "owner": "libretro", @@ -451,8 +451,8 @@ "swanstation": { "owner": "libretro", "repo": "swanstation", - "rev": "27a224fc9e86e0f061504878d1c0cbf3fd6891af", - "sha256": "5kW9/4gMfyvo3ExlJVivx8LhW5as3Mq5fhlNrIFDUVM=" + "rev": "f2e335bfd4751410dfb24d933f762b9a4fd7fdeb", + "sha256": "l3A1Xb6YD+OOTZEF6whst1Kr8fSRnXuIVIUN1BCa2Bw=" }, "tgbdual": { "owner": "libretro", diff --git a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/libretro-core-info.nix b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/libretro-core-info.nix index 13073d9c52..79f9002ed4 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/libretro-core-info.nix +++ b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/libretro-core-info.nix @@ -5,16 +5,21 @@ stdenvNoCC.mkDerivation rec { pname = "libretro-core-info"; - version = "1.13.0"; + version = "1.14.0"; src = fetchFromGitHub { owner = "libretro"; repo = "libretro-core-info"; - hash = "sha256-rTq2h+IGJduBkP4qCACmm3T2PvbZ0mOmwD1jLkJ2j/Q="; + hash = "sha256-3nw8jUxBQJxiKlWS6OjTjwUYWKx3r2E7eHmbj4naWrk="; rev = "v${version}"; }; - makeFlags = [ "PREFIX=$(out)" ]; + makeFlags = [ + "PREFIX=$(out)" + # By default install in $(PREFIX)/share/libretro/info + # that is not in RetroArch's core info path + "INSTALLDIR=$(PREFIX)/share/retroarch/cores" + ]; dontBuild = true; diff --git a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/retroarch-assets.nix b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/retroarch-assets.nix new file mode 100644 index 0000000000..265b827577 --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/retroarch-assets.nix @@ -0,0 +1,33 @@ +{ lib +, stdenvNoCC +, fetchFromGitHub +}: + +stdenvNoCC.mkDerivation rec { + pname = "retroarch-assets"; + version = "unstable-2022-10-24"; + + src = fetchFromGitHub { + owner = "libretro"; + repo = "retroarch-assets"; + rev = "4ec80faf1b5439d1654f407805bb66141b880826"; + hash = "sha256-j1npVKEknq7hpFr/XfST2GNHI5KnEYjZAM0dw4tMsYk="; + }; + + makeFlags = [ + "PREFIX=$(out)" + # By default install in $(PREFIX)/share/libretro/assets + # that is not in RetroArch's assets path + "INSTALLDIR=$(PREFIX)/share/retroarch/assets" + ]; + + dontBuild = true; + + meta = with lib; { + description = "Assets needed for RetroArch"; + homepage = "https://libretro.com"; + license = licenses.mit; + maintainers = with maintainers; teams.libretro.members ++ [ ]; + platforms = platforms.all; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/update_cores.py b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/update_cores.py index b546569d28..4ed9dbf340 100755 --- a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/update_cores.py +++ b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/update_cores.py @@ -2,12 +2,15 @@ #!nix-shell -I nixpkgs=../../../../ -i python3 -p "python3.withPackages (ps: with ps; [ requests nix-prefetch-github ])" -p "git" import json -import sys +import os import subprocess +import sys from pathlib import Path +from concurrent.futures import ThreadPoolExecutor SCRIPT_PATH = Path(__file__).absolute().parent HASHES_PATH = SCRIPT_PATH / "hashes.json" +GET_REPO_THREADS = int(os.environ.get("GET_REPO_THREADS", 8)) CORES = { "atari800": {"repo": "libretro-atari800"}, "beetle-gba": {"repo": "beetle-gba-libretro"}, @@ -27,7 +30,7 @@ CORES = { "bsnes": {"repo": "bsnes-libretro"}, "bsnes-hd": {"repo": "bsnes-hd", "owner": "DerKoun"}, "bsnes-mercury": {"repo": "bsnes-mercury"}, - "citra": { "repo": "citra", "fetch_submodules": True }, + "citra": {"repo": "citra", "fetch_submodules": True}, "desmume": {"repo": "desmume"}, "desmume2015": {"repo": "desmume2015"}, "dolphin": {"repo": "dolphin"}, @@ -141,16 +144,23 @@ def get_repo_hash(fetcher="fetchFromGitHub", **kwargs): raise ValueError(f"Unsupported fetcher: {fetcher}") -def get_repo_hashes(cores_to_update=[]): +def get_repo_hashes(cores={}): + def get_repo_hash_from_core_def(core_def): + core, repo = core_def + info(f"Getting repo hash for '{core}'...") + result = core, get_repo_hash(**repo) + info(f"Got repo hash for '{core}'!") + return result + with open(HASHES_PATH) as f: repo_hashes = json.loads(f.read()) - for core, repo in CORES.items(): - if core in cores_to_update: - info(f"Getting repo hash for '{core}'...") - repo_hashes[core] = get_repo_hash(**repo) - else: - info(f"Skipping '{core}'...") + info(f"Running with {GET_REPO_THREADS} threads!") + with ThreadPoolExecutor(max_workers=GET_REPO_THREADS) as executor: + new_repo_hashes = executor.map(get_repo_hash_from_core_def, cores.items()) + + for core, repo in new_repo_hashes: + repo_hashes[core] = repo return repo_hashes @@ -164,7 +174,8 @@ def main(): else: cores_to_update = CORES.keys() - repo_hashes = get_repo_hashes(cores_to_update) + cores = {core: repo for core, repo in CORES.items() if core in cores_to_update} + repo_hashes = get_repo_hashes(cores) info(f"Generating '{HASHES_PATH}'...") with open(HASHES_PATH, "w") as f: f.write(json.dumps(dict(sorted(repo_hashes.items())), indent=4)) diff --git a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/use-default-values-for-libretro_info_path-assets_directory.patch b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/use-default-values-for-libretro_info_path-assets_directory.patch new file mode 100644 index 0000000000..7ef7f439ec --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/use-default-values-for-libretro_info_path-assets_directory.patch @@ -0,0 +1,34 @@ +From 6960855a0cdfd671d214030260b340a73878af52 Mon Sep 17 00:00:00 2001 +From: Thiago Kenji Okada +Date: Fri, 23 Dec 2022 21:42:15 +0000 +Subject: [PATCH] Use default values for libretro_info_path/assets_directories + +--- + configuration.c | 4 ++-- + 1 file changed, 2 insertions(+), 2 deletions(-) + +diff --git a/configuration.c b/configuration.c +index d9ab8370c4..15b575d8a2 100644 +--- a/configuration.c ++++ b/configuration.c +@@ -1483,7 +1483,7 @@ static struct config_path_setting *populate_settings_path( + SETTING_PATH("core_options_path", + settings->paths.path_core_options, false, NULL, true); + SETTING_PATH("libretro_info_path", +- settings->paths.path_libretro_info, false, NULL, true); ++ settings->paths.path_libretro_info, false, NULL, false); + SETTING_PATH("content_database_path", + settings->paths.path_content_database, false, NULL, true); + SETTING_PATH("cheat_database_path", +@@ -1539,7 +1539,7 @@ static struct config_path_setting *populate_settings_path( + SETTING_PATH("core_assets_directory", + settings->paths.directory_core_assets, true, NULL, true); + SETTING_PATH("assets_directory", +- settings->paths.directory_assets, true, NULL, true); ++ settings->paths.directory_assets, true, NULL, false); + SETTING_PATH("dynamic_wallpapers_directory", + settings->paths.directory_dynamic_wallpapers, true, NULL, true); + SETTING_PATH("thumbnails_directory", +-- +2.38.1 + diff --git a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/use-fixed-path-for-libretro_core_info.patch b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/use-fixed-path-for-libretro_core_info.patch deleted file mode 100644 index 256397fd49..0000000000 --- a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/use-fixed-path-for-libretro_core_info.patch +++ /dev/null @@ -1,41 +0,0 @@ -From 6145cb9ed935621f1974655fe1ab44cf2f0fbcce Mon Sep 17 00:00:00 2001 -From: Thiago Kenji Okada -Date: Sat, 29 Oct 2022 12:27:55 +0100 -Subject: [PATCH] Use fixed path for libretro_core_info - ---- - configuration.c | 2 +- - frontend/drivers/platform_unix.c | 4 ++-- - 2 files changed, 3 insertions(+), 3 deletions(-) - -diff --git a/configuration.c b/configuration.c -index af3fc8f43c..c6d56308b3 100644 ---- a/configuration.c -+++ b/configuration.c -@@ -1468,7 +1468,7 @@ static struct config_path_setting *populate_settings_path( - SETTING_PATH("core_options_path", - settings->paths.path_core_options, false, NULL, true); - SETTING_PATH("libretro_info_path", -- settings->paths.path_libretro_info, false, NULL, true); -+ settings->paths.path_libretro_info, false, NULL, false); - SETTING_PATH("content_database_path", - settings->paths.path_content_database, false, NULL, true); - SETTING_PATH("cheat_database_path", -diff --git a/frontend/drivers/platform_unix.c b/frontend/drivers/platform_unix.c -index fe5f7341c9..c2a91f8c99 100644 ---- a/frontend/drivers/platform_unix.c -+++ b/frontend/drivers/platform_unix.c -@@ -1799,8 +1799,8 @@ static void frontend_unix_get_env(int *argc, - fill_pathname_join(g_defaults.dirs[DEFAULT_DIR_CORE_INFO], base_path, - "core_info", sizeof(g_defaults.dirs[DEFAULT_DIR_CORE_INFO])); - #else -- fill_pathname_join(g_defaults.dirs[DEFAULT_DIR_CORE_INFO], base_path, -- "cores", sizeof(g_defaults.dirs[DEFAULT_DIR_CORE_INFO])); -+ fill_pathname_join(g_defaults.dirs[DEFAULT_DIR_CORE_INFO], "@libretro_info_path@", -+ "share/libretro/info", sizeof(g_defaults.dirs[DEFAULT_DIR_CORE_INFO])); - #endif - fill_pathname_join(g_defaults.dirs[DEFAULT_DIR_AUTOCONFIG], base_path, - "autoconfig", sizeof(g_defaults.dirs[DEFAULT_DIR_AUTOCONFIG])); --- -2.38.0 - diff --git a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/wrapper.nix b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/wrapper.nix index 4136d263ea..afef0bef8a 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/retroarch/wrapper.nix +++ b/third_party/nixpkgs/pkgs/applications/emulators/retroarch/wrapper.nix @@ -3,7 +3,6 @@ , makeWrapper , retroarch , symlinkJoin -, writeTextDir , cores ? [ ] }: diff --git a/third_party/nixpkgs/pkgs/applications/emulators/ryujinx/default.nix b/third_party/nixpkgs/pkgs/applications/emulators/ryujinx/default.nix index 90687a4e19..0ede7db9f1 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/ryujinx/default.nix +++ b/third_party/nixpkgs/pkgs/applications/emulators/ryujinx/default.nix @@ -29,13 +29,13 @@ buildDotnetModule rec { pname = "ryujinx"; - version = "1.1.373"; # Based off of the official github actions builds: https://github.com/Ryujinx/Ryujinx/actions/workflows/release.yml + version = "1.1.489"; # Based off of the official github actions builds: https://github.com/Ryujinx/Ryujinx/actions/workflows/release.yml src = fetchFromGitHub { owner = "Ryujinx"; repo = "Ryujinx"; - rev = "567c64e149f1ec3487dea34abdffc7bfa2f55400"; - sha256 = "0b4c3dmvnx4m7mzhm3kzw3bjnw53rwi3qr2p4i9kyxbb2790bmsb"; + rev = "37d27c4c99486312d9a282d7fc056c657efe0848"; + sha256 = "0h55vv2g9i81km0jzlb62arlky5ci4i45jyxig3znqr1zb4l0a67"; }; dotnet-sdk = dotnetCorePackages.sdk_7_0; @@ -91,8 +91,6 @@ buildDotnetModule rec { "/p:ExtraDefineConstants=DISABLE_UPDATER" ]; - dotnetRestoreFlags = [ "--runtime ${dotnetCorePackages.sdk_7_0.systemToDotnetRid stdenvNoCC.targetPlatform.system}" ]; - executables = [ "Ryujinx.Headless.SDL2" "Ryujinx.Ava" diff --git a/third_party/nixpkgs/pkgs/applications/emulators/ryujinx/deps.nix b/third_party/nixpkgs/pkgs/applications/emulators/ryujinx/deps.nix index 780ec9dee8..214d0ee747 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/ryujinx/deps.nix +++ b/third_party/nixpkgs/pkgs/applications/emulators/ryujinx/deps.nix @@ -2,43 +2,34 @@ # Please dont edit it manually, your changes might get overwritten! { fetchNuGet }: [ - (fetchNuGet { pname = "AtkSharp"; version = "3.22.25.128"; sha256 = "0fg01zi7v6127043jzxzihirsdp187pyj83gfa6p79cx763l7z94"; }) - (fetchNuGet { pname = "Avalonia"; version = "0.10.15"; sha256 = "02rf96gxpafbk0ilg3nxf0fas9gkpb25kzqc2lnbxp8h366qg431"; }) + (fetchNuGet { pname = "Avalonia"; version = "0.10.18"; 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}) + (fetchNuGet { pname = "System.IdentityModel.Tokens.Jwt"; version = "6.25.1"; sha256 = "03ifsmlfs2v5ca6wc33q8xd89m2jm4h2q57s1s9f4yaigqbq1vrl"; }) (fetchNuGet { pname = "System.IO"; version = "4.1.0"; sha256 = "1g0yb8p11vfd0kbkyzlfsbsp5z44lwsvyc0h3dpw6vqnbi035ajp"; }) (fetchNuGet { pname = "System.IO"; version = "4.3.0"; sha256 = "05l9qdrzhm4s5dixmx68kxwif4l99ll5gqmh7rqgw554fx0agv5f"; }) (fetchNuGet { pname = "System.IO.Compression"; version = "4.1.0"; sha256 = "0iym7s3jkl8n0vzm3jd6xqg9zjjjqni05x45dwxyjr2dy88hlgji"; }) @@ -212,9 +200,10 @@ (fetchNuGet { pname = "System.Linq"; version = "4.3.0"; sha256 = "1w0gmba695rbr80l1k2h4mrwzbzsyfl2z4klmpbsvsg5pm4a56s7"; }) (fetchNuGet { pname = "System.Linq.Expressions"; version = "4.1.0"; sha256 = "1gpdxl6ip06cnab7n3zlcg6mqp7kknf73s8wjinzi4p0apw82fpg"; }) (fetchNuGet { pname = "System.Linq.Expressions"; version = "4.3.0"; sha256 = "0ky2nrcvh70rqq88m9a5yqabsl4fyd17bpr63iy2mbivjs2nyypv"; }) - (fetchNuGet { pname = "System.Management"; version = "6.0.0"; sha256 = "0ra1g75ykapg6i5y0za721kpjd6xcq6dalijkdm6fsxxmz8iz4dr"; }) + (fetchNuGet { pname = "System.Management"; version = "7.0.0"; sha256 = "1x3xwjzkmlcrj6rl6f2y8lkkp1s8xkhwqlpqk9ylpwqz7w3mhis0"; }) (fetchNuGet { pname = "System.Memory"; version = "4.5.3"; sha256 = "0naqahm3wljxb5a911d37mwjqjdxv9l0b49p5dmfyijvni2ppy8a"; }) (fetchNuGet { pname = "System.Memory"; version = "4.5.4"; sha256 = "14gbbs22mcxwggn0fcfs1b062521azb9fbb7c113x0mq6dzq9h6y"; }) + (fetchNuGet { pname = "System.Memory"; version = "4.5.5"; sha256 = "08jsfwimcarfzrhlyvjjid61j02irx6xsklf32rv57x2aaikvx0h"; }) (fetchNuGet { pname = "System.Net.Http"; version = "4.1.0"; sha256 = "1i5rqij1icg05j8rrkw4gd4pgia1978mqhjzhsjg69lvwcdfg8yb"; }) (fetchNuGet { pname = "System.Net.NameResolution"; version = "4.3.0"; sha256 = "15r75pwc0rm3vvwsn8rvm2krf929mjfwliv0mpicjnii24470rkq"; }) (fetchNuGet { pname = "System.Net.Primitives"; version = "4.0.11"; sha256 = "10xzzaynkzkakp7jai1ik3r805zrqjxiz7vcagchyxs2v26a516r"; }) @@ -262,7 +251,6 @@ (fetchNuGet { pname = "System.Runtime.InteropServices.RuntimeInformation"; version = "4.0.0"; sha256 = "0glmvarf3jz5xh22iy3w9v3wyragcm4hfdr17v90vs7vcrm7fgp6"; }) (fetchNuGet { pname = "System.Runtime.InteropServices.RuntimeInformation"; version = "4.3.0"; sha256 = "0q18r1sh4vn7bvqgd6dmqlw5v28flbpj349mkdish2vjyvmnb2ii"; }) (fetchNuGet { pname = "System.Runtime.Numerics"; version = "4.0.1"; sha256 = "1y308zfvy0l5nrn46mqqr4wb4z1xk758pkk8svbz8b5ij7jnv4nn"; }) - (fetchNuGet { pname = "System.Runtime.Serialization.Primitives"; version = "4.1.1"; sha256 = "042rfjixknlr6r10vx2pgf56yming8lkjikamg3g4v29ikk78h7k"; }) (fetchNuGet { pname = "System.Security.AccessControl"; version = "4.5.0"; sha256 = "1wvwanz33fzzbnd2jalar0p0z3x0ba53vzx1kazlskp7pwyhlnq0"; }) (fetchNuGet { pname = "System.Security.Claims"; version = "4.3.0"; sha256 = "0jvfn7j22l3mm28qjy3rcw287y9h65ha4m940waaxah07jnbzrhn"; }) (fetchNuGet { pname = "System.Security.Cryptography.Algorithms"; version = "4.2.0"; sha256 = "148s9g5dgm33ri7dnh19s4lgnlxbpwvrw2jnzllq2kijj4i4vs85"; }) @@ -283,8 +271,9 @@ (fetchNuGet { pname = "System.Text.Encoding.CodePages"; version = "6.0.0"; sha256 = "0gm2kiz2ndm9xyzxgi0jhazgwslcs427waxgfa30m7yqll1kcrww"; }) (fetchNuGet { pname = "System.Text.Encoding.Extensions"; version = "4.0.11"; sha256 = "08nsfrpiwsg9x5ml4xyl3zyvjfdi4mvbqf93kjdh11j4fwkznizs"; }) (fetchNuGet { pname = "System.Text.Encoding.Extensions"; version = "4.3.0"; sha256 = "11q1y8hh5hrp5a3kw25cb6l00v5l5dvirkz8jr3sq00h1xgcgrxy"; }) - (fetchNuGet { pname = "System.Text.Json"; version = "4.7.0"; sha256 = "0fp3xrysccm5dkaac4yb51d793vywxks978kkl5x4db9gw29rfdr"; }) + (fetchNuGet { pname = "System.Text.Encodings.Web"; version = "6.0.0"; sha256 = "06n9ql3fmhpjl32g3492sj181zjml5dlcc5l76xq2h38c4f87sai"; }) (fetchNuGet { pname = "System.Text.Json"; version = "4.7.2"; sha256 = "10xj1pw2dgd42anikvj9qm23ccssrcp7dpznpj4j7xjp1ikhy3y4"; }) + (fetchNuGet { pname = "System.Text.Json"; version = "6.0.0"; sha256 = "1si2my1g0q0qv1hiqnji4xh9wd05qavxnzj9dwgs23iqvgjky0gl"; }) (fetchNuGet { pname = "System.Text.RegularExpressions"; version = "4.1.0"; sha256 = "1mw7vfkkyd04yn2fbhm38msk7dz2xwvib14ygjsb8dq2lcvr18y7"; }) (fetchNuGet { pname = "System.Text.RegularExpressions"; version = "4.3.0"; sha256 = "1bgq51k7fwld0njylfn7qc5fmwrk2137gdq7djqdsw347paa9c2l"; }) (fetchNuGet { pname = "System.Threading"; version = "4.0.11"; sha256 = "19x946h926bzvbsgj28csn46gak2crv2skpwsx80hbgazmkgb1ls"; }) @@ -306,5 +295,5 @@ (fetchNuGet { pname = "System.Xml.XPath"; version = "4.3.0"; sha256 = "1cv2m0p70774a0sd1zxc8fm8jk3i5zk2bla3riqvi8gsm0r4kpci"; }) (fetchNuGet { pname = "System.Xml.XPath.XmlDocument"; version = "4.3.0"; sha256 = "1h9lh7qkp0lff33z847sdfjj8yaz98ylbnkbxlnsbflhj9xyfqrm"; }) (fetchNuGet { pname = "Tmds.DBus"; version = "0.9.0"; sha256 = "0vvx6sg8lxm23g5jvm5wh2gfs95mv85vd52lkq7d1b89bdczczf3"; }) - (fetchNuGet { pname = "XamlNameReferenceGenerator"; version = "1.3.4"; sha256 = "0w1bz5sr6y5fhgx1f54xyl8rx7y3kyf1fhacnd6akq8970zjdkdi"; }) + (fetchNuGet { pname = "XamlNameReferenceGenerator"; version = "1.5.1"; sha256 = "11sld5a9z2rdglkykvylghka7y37ny18naywpgpxp485m9bc63wc"; }) ] diff --git a/third_party/nixpkgs/pkgs/applications/emulators/wine/base.nix b/third_party/nixpkgs/pkgs/applications/emulators/wine/base.nix index f1ae106df4..ae38f5d332 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/wine/base.nix +++ b/third_party/nixpkgs/pkgs/applications/emulators/wine/base.nix @@ -44,7 +44,7 @@ stdenv.mkDerivation ((lib.optionalAttrs (buildScript != null) { }) // rec { inherit version src; - pname = prevName + lib.optionalString supportFlags.waylandSupport "wayland"; + pname = prevName + lib.optionalString supportFlags.waylandSupport "-wayland"; # Fixes "Compiler cannot create executables" building wineWow with mingwSupport strictDeps = true; diff --git a/third_party/nixpkgs/pkgs/applications/emulators/wine/sources.nix b/third_party/nixpkgs/pkgs/applications/emulators/wine/sources.nix index e00f394067..0e8f129f91 100644 --- a/third_party/nixpkgs/pkgs/applications/emulators/wine/sources.nix +++ b/third_party/nixpkgs/pkgs/applications/emulators/wine/sources.nix @@ -24,9 +24,9 @@ let fetchurl = args@{url, sha256, ...}: in rec { stable = fetchurl rec { - version = "7.0"; + version = "7.0.1"; url = "https://dl.winehq.org/wine/source/7.0/wine-${version}.tar.xz"; - sha256 = "sha256-W0PifVwIXLGPlzlORhgDENXu98HZHGiVQyo4ibLeCGs="; + sha256 = "sha256-gHyqeBIbFiUPJA0oKKB8pOPGCXOeVSTvD0z4muSagWw="; ## see http://wiki.winehq.org/Gecko gecko32 = fetchurl rec { diff --git a/third_party/nixpkgs/pkgs/applications/emulators/yuzu/update.sh b/third_party/nixpkgs/pkgs/applications/emulators/yuzu/update.sh index 074d5b155f..7234adf977 100755 --- a/third_party/nixpkgs/pkgs/applications/emulators/yuzu/update.sh +++ b/third_party/nixpkgs/pkgs/applications/emulators/yuzu/update.sh @@ -21,10 +21,10 @@ updateBranch() { oldHash="$(nix eval --raw -f "./default.nix" "$attribute".src.drvAttrs.outputHash)" if [[ "$branch" = "mainline" ]]; then - newVersion="$(curl -s ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} "https://api.github.com/repos/yuzu-emu/yuzu-mainline/releases?per_page=1" \ + newVersion="$(curl -s ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} "https://api.github.com/repos/yuzu-emu/yuzu-mainline/releases?per_page=1" \ | jq -r '.[0].name' | cut -d" " -f2)" elif [[ "$branch" = "early-access" ]]; then - newVersion="$(curl -s ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} "https://api.github.com/repos/pineappleEA/pineapple-src/releases?per_page=2" \ + newVersion="$(curl -s ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} "https://api.github.com/repos/pineappleEA/pineapple-src/releases?per_page=2" \ | jq -r '.[].tag_name' | grep '^EA-[0-9]*' | head -n1 | cut -d"-" -f2 | cut -d" " -f1)" fi @@ -45,18 +45,18 @@ updateBranch() { sed -i "s,${oldVersion},${newVersion}," "$DEFAULT_NIX" sed -i "s,${oldHash},${newHash},g" "$DEFAULT_NIX" - echo " succesfully updated $attribute. new hash: $newHash" + echo " successfully updated $attribute. new hash: $newHash" } updateCompatibilityList() { local latestRevision oldUrl newUrl oldHash newHash oldDate newDate - latestRevision="$(curl -s ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} "https://api.github.com/repos/flathub/org.yuzu_emu.yuzu/commits/master" | jq -r '.sha')" + latestRevision="$(curl -s ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} "https://api.github.com/repos/flathub/org.yuzu_emu.yuzu/commits/master" | jq -r '.sha')" oldUrl="$(sed -n '/yuzu-compat-list/,/url/p' "$DEFAULT_NIX" | tail -n1 | cut -d'"' -f2)" newUrl="https://raw.githubusercontent.com/flathub/org.yuzu_emu.yuzu/${latestRevision}/compatibility_list.json" oldDate="$(sed -n '/last updated.*/p' "$DEFAULT_NIX" | rev | cut -d' ' -f1 | rev)" - newDate="$(curl -s ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} "https://api.github.com/repos/flathub/org.yuzu_emu.yuzu/commits/${latestRevision}" \ + newDate="$(curl -s ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} "https://api.github.com/repos/flathub/org.yuzu_emu.yuzu/commits/${latestRevision}" \ | jq -r '.commit.committer.date' | cut -d'T' -f1)" oldHash="$(sed -n '/yuzu-compat-list/,/sha256/p' "$DEFAULT_NIX" | tail -n1 | cut -d'"' -f2)" @@ -72,7 +72,7 @@ updateCompatibilityList() { sed -i "s,${oldUrl},${newUrl},g" "$DEFAULT_NIX" sed -i "s,${oldHash},${newHash},g" "$DEFAULT_NIX" sed -i "s,${oldDate},${newDate},g" "$DEFAULT_NIX" - echo " succesfully updated compatibility_list. new hash: $newHash" + echo " successfully updated compatibility_list. new hash: $newHash" } if [[ "$BRANCH" = "mainline" ]] || [[ "$BRANCH" = "early-access" ]]; then diff --git a/third_party/nixpkgs/pkgs/applications/file-managers/clifm/default.nix b/third_party/nixpkgs/pkgs/applications/file-managers/clifm/default.nix index 52f087b9db..003b07cb97 100644 --- a/third_party/nixpkgs/pkgs/applications/file-managers/clifm/default.nix +++ b/third_party/nixpkgs/pkgs/applications/file-managers/clifm/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "clifm"; - version = "1.7"; + version = "1.9"; src = fetchFromGitHub { owner = "leo-arch"; repo = pname; rev = "v${version}"; - sha256 = "sha256-7nMAaMLFLF5WuWgac9wdIvzRTTVpKRM7zB2tIlowBEE="; + sha256 = "sha256-jrP8V1EhHldliZEjiX55TJujc82ub46aWi1boJYDVTg="; }; buildInputs = [ libcap acl file readline ]; diff --git a/third_party/nixpkgs/pkgs/applications/file-managers/felix-fm/default.nix b/third_party/nixpkgs/pkgs/applications/file-managers/felix-fm/default.nix index aea23fa46a..7f17077132 100644 --- a/third_party/nixpkgs/pkgs/applications/file-managers/felix-fm/default.nix +++ b/third_party/nixpkgs/pkgs/applications/file-managers/felix-fm/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "felix"; - version = "2.2.1"; + version = "2.2.2"; src = fetchFromGitHub { owner = "kyoheiu"; repo = pname; rev = "v${version}"; - sha256 = "sha256-DHFQLC89ZNf6wk/L9cmEj1qSfQhqFAmQ9msYTRy0y00="; + sha256 = "sha256-VKesly7Jp1PgukArNKvDGzSRh7DaL3A/Dub3dLR6ET4="; }; - cargoSha256 = "sha256-9AC8muMKc0eU3g4uQvWscIULNetlgEs6ZVsMr4dpwqk="; + cargoSha256 = "sha256-7+4SIBnu4R2mbH2nWBX9BmJL1n8t46d1vrMpNaUHAo4="; nativeBuildInputs = [ pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/applications/file-managers/lf/default.nix b/third_party/nixpkgs/pkgs/applications/file-managers/lf/default.nix index faff303779..fe19e5408c 100644 --- a/third_party/nixpkgs/pkgs/applications/file-managers/lf/default.nix +++ b/third_party/nixpkgs/pkgs/applications/file-managers/lf/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "lf"; - version = "27"; + version = "28"; src = fetchFromGitHub { owner = "gokcehan"; repo = "lf"; rev = "r${version}"; - hash = "sha256-CrtVw3HhrC+D3c4ltHX8FSQnDvBpQJ890oJHoD6qPt4="; + hash = "sha256-VEXWjpdUP5Kabimp9kKoLR7/FlE39MAroRBl9au2TI8="; }; - vendorSha256 = "sha256-evkQT624EGj6MUwx3/ajdIbUMYjA1QyOnIQFtTLt0Yo="; + vendorHash = "sha256-oIIyQbw42+B6T6Qn6nIV62Xr+8ms3tatfFI8ocYNr0A="; nativeBuildInputs = [ installShellFiles ]; diff --git a/third_party/nixpkgs/pkgs/applications/gis/qgis/unwrapped-ltr.nix b/third_party/nixpkgs/pkgs/applications/gis/qgis/unwrapped-ltr.nix index c694d5da3d..e11df27ab6 100644 --- a/third_party/nixpkgs/pkgs/applications/gis/qgis/unwrapped-ltr.nix +++ b/third_party/nixpkgs/pkgs/applications/gis/qgis/unwrapped-ltr.nix @@ -72,14 +72,14 @@ let six ]; in mkDerivation rec { - version = "3.22.10"; + version = "3.22.13"; pname = "qgis-ltr-unwrapped"; src = fetchFromGitHub { owner = "qgis"; repo = "QGIS"; rev = "final-${lib.replaceStrings [ "." ] [ "_" ] version}"; - hash = "sha256-v/PshUZpf8fVW2PrGBiuAMfyfC/osOkR9GcnNOyg0l4="; + hash = "sha256-l9UaxPBTkKrTygise0nVBDrPX3aRRW62HtIYwrtYp3Q="; }; passthru = { diff --git a/third_party/nixpkgs/pkgs/applications/gis/qgis/unwrapped.nix b/third_party/nixpkgs/pkgs/applications/gis/qgis/unwrapped.nix index 57913c3e17..9f445facb1 100644 --- a/third_party/nixpkgs/pkgs/applications/gis/qgis/unwrapped.nix +++ b/third_party/nixpkgs/pkgs/applications/gis/qgis/unwrapped.nix @@ -72,14 +72,14 @@ let six ]; in mkDerivation rec { - version = "3.26.2"; + version = "3.28.2"; pname = "qgis-unwrapped"; src = fetchFromGitHub { owner = "qgis"; repo = "QGIS"; rev = "final-${lib.replaceStrings [ "." ] [ "_" ] version}"; - hash = "sha256-WU1yamZM/UVhtZjoZ/5J8gt7FOHEHi0D2Z9BWEl4br0="; + hash = "sha256-ndwDN/DH+Y+dc8aNa45cSIM8yQUmIWq0jx6xWsZo4rk="; }; passthru = { diff --git a/third_party/nixpkgs/pkgs/applications/graphics/ImageMagick/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/ImageMagick/default.nix index f3bac819ac..d66fee8ab7 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/ImageMagick/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/ImageMagick/default.nix @@ -46,13 +46,13 @@ in stdenv.mkDerivation rec { pname = "imagemagick"; - version = "7.1.0-54"; + version = "7.1.0-55"; src = fetchFromGitHub { owner = "ImageMagick"; repo = "ImageMagick"; rev = version; - hash = "sha256-aQipCcqOS9viOLPHEx21MrJHdxYKZl++3DIKMz97Ukw="; + hash = "sha256-V0poyS1QnHhnSc3QbHHE+BctCBv2knriK0ihMF565d8="; }; outputs = [ "out" "dev" "doc" ]; # bin/ isn't really big diff --git a/third_party/nixpkgs/pkgs/applications/graphics/c3d/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/c3d/default.nix index e38ca908fe..58af106404 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/c3d/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/c3d/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, cmake, itk, Cocoa }: +{ lib, stdenv, fetchFromGitHub, cmake, itk_5_2, Cocoa }: stdenv.mkDerivation rec { pname = "c3d"; @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ cmake ]; - buildInputs = [ itk ] + buildInputs = [ itk_5_2 ] ++ lib.optional stdenv.isDarwin Cocoa; cmakeFlags = [ "-DCONVERT3D_USE_ITK_REMOTE_MODULES=OFF" ]; diff --git a/third_party/nixpkgs/pkgs/applications/graphics/cyan/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/cyan/default.nix index 2e59c6716b..22fab6cc8d 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/cyan/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/cyan/default.nix @@ -27,9 +27,7 @@ stdenv.mkDerivation rec { buildInputs = [ imagemagick ]; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "Image viewer and converter, designed for prepress (print) work"; diff --git a/third_party/nixpkgs/pkgs/applications/graphics/dia/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/dia/default.nix index 429eae34a2..d391ca7554 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/dia/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/dia/default.nix @@ -31,6 +31,9 @@ stdenv.mkDerivation { ''; configureFlags = lib.optional withGNOME "--enable-gnome"; + # error: implicitly declaring library function 'finite' with type 'int (double)' + NIX_CFLAGS_COMPILE = lib.optionalString (stdenv.isDarwin && stdenv.isAarch64) "-Dfinite=isfinite"; + hardeningDisable = [ "format" ]; meta = with lib; { @@ -39,7 +42,5 @@ stdenv.mkDerivation { maintainers = with maintainers; [ raskin ]; license = licenses.gpl2; platforms = platforms.unix; - # never built on aarch64-darwin since first introduction in nixpkgs - broken = stdenv.isDarwin && stdenv.isAarch64; }; } diff --git a/third_party/nixpkgs/pkgs/applications/graphics/drawio/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/drawio/default.nix index 6c17c07157..274c7b00d6 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/drawio/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/drawio/default.nix @@ -11,11 +11,11 @@ stdenv.mkDerivation rec { pname = "drawio"; - version = "20.6.2"; + version = "20.7.4"; src = fetchurl { url = "https://github.com/jgraph/drawio-desktop/releases/download/v${version}/drawio-x86_64-${version}.rpm"; - sha256 = "cf408c19622d7812b93f0f778b7f091a4387992f9d9a767f4bc1c417b61b7058"; + sha256 = "sha256-gmC8s+0eef09wcLE9fBiG82rRPXijRyR1WTlp4gYPq4="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/graphics/evilpixie/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/evilpixie/default.nix index 88a381ed56..49611f1709 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/evilpixie/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/evilpixie/default.nix @@ -14,13 +14,13 @@ stdenv.mkDerivation rec { pname = "evilpixie"; - version = "0.3"; + version = "0.3.1"; src = fetchFromGitHub { owner = "bcampbell"; repo = "evilpixie"; rev = "v${version}"; - sha256 = "sha256-t7ccaMXaCanCyn3oV8WJ11bhF7xTBkd992AheFJpSGQ="; + sha256 = "sha256-+DdAN+xDOYxLgLHUlr75piTEPrWpuOyXvxckhBEl7yU="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/graphics/f3d/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/f3d/default.nix index 42671599a6..d32662937a 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/f3d/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/f3d/default.nix @@ -13,9 +13,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake ]; - buildInputs = [ vtk_9 ] - ++ lib.optionals stdenv.isLinux [ libGL libX11 ] - ++ lib.optionals stdenv.isDarwin [ Cocoa OpenGL ]; + buildInputs = [ vtk_9 ] ++ lib.optionals stdenv.isDarwin [ Cocoa OpenGL ]; # conflict between VTK and Nixpkgs; # see https://github.com/NixOS/nixpkgs/issues/89167 diff --git a/third_party/nixpkgs/pkgs/applications/graphics/fondo/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/fondo/default.nix index c8d6fc6030..f3854b4c69 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/fondo/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/fondo/default.nix @@ -58,9 +58,7 @@ stdenv.mkDerivation rec { patchShebangs meson/post_install.py ''; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { homepage = "https://github.com/calo001/fondo"; diff --git a/third_party/nixpkgs/pkgs/applications/graphics/foxotron/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/foxotron/default.nix index c06e707b34..e8fd036480 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/foxotron/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/foxotron/default.nix @@ -35,6 +35,11 @@ stdenv.mkDerivation rec { sha256 = "sha256-WjsVvFhwVCzclHxA+Gu2YtR2yK0Opqhncwlg9FEhOLk="; }; + postPatch = '' + substituteInPlace CMakeLists.txt \ + --replace "set(CMAKE_OSX_ARCHITECTURES x86_64)" "" + ''; + nativeBuildInputs = [ cmake pkg-config makeWrapper ]; buildInputs = [ zlib ] @@ -55,9 +60,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { @@ -70,7 +73,5 @@ stdenv.mkDerivation rec { license = licenses.unlicense; maintainers = with maintainers; [ OPNA2608 ]; platforms = platforms.all; - # never built on aarch64-darwin since first introduction in nixpkgs - broken = stdenv.isDarwin && stdenv.isAarch64; }; } diff --git a/third_party/nixpkgs/pkgs/applications/graphics/geeqie/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/geeqie/default.nix index ddc2b451b2..7d9a039a5b 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/geeqie/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/geeqie/default.nix @@ -49,9 +49,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/graphics/ideogram/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/ideogram/default.nix index 9c854d9ffb..12706d6d36 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/ideogram/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/ideogram/default.nix @@ -51,9 +51,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/graphics/imgbrd-grabber/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/imgbrd-grabber/default.nix index 5988627d40..e37539ceee 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/imgbrd-grabber/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/imgbrd-grabber/default.nix @@ -18,13 +18,13 @@ stdenv.mkDerivation rec { pname = "imgbrd-grabber"; - version = "7.9.1"; + version = "7.10.0"; src = fetchFromGitHub { owner = "Bionus"; repo = "imgbrd-grabber"; rev = "v${version}"; - sha256 = "sha256-0CceSXH1GJbWKOnxZkjmbuyj7NBOQ6tpCYrCl7z4Vrw="; + sha256 = "sha256-AT6pN2do0LlH6xAXKcFQv+oderD88/EiG1JnCw6kOOg="; fetchSubmodules = true; }; @@ -67,8 +67,10 @@ stdenv.mkDerivation rec { # link the catch2 sources from nixpkgs ln -sf ${catch2.src} tests/src/vendor/catch + ''; - sed "s|strict\": true|strict\": false|g" -i ./sites/tsconfig.json + preBuild = '' + export HOME=$TMPDIR ''; postInstall = '' diff --git a/third_party/nixpkgs/pkgs/applications/graphics/mangareader/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/mangareader/default.nix index 5ae270cca8..81073c0511 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/mangareader/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/mangareader/default.nix @@ -41,9 +41,7 @@ stdenv.mkDerivation rec { kconfigwidgets ]; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "Qt manga reader for local files"; diff --git a/third_party/nixpkgs/pkgs/applications/graphics/openboard/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/openboard/default.nix index 0725acd237..b0d59d4a7f 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/openboard/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/openboard/default.nix @@ -1,10 +1,10 @@ -{ mkDerivation, lib, fetchFromGitHub, fetchpatch, copyDesktopItems, makeDesktopItem, qmake -, qtbase, qtxmlpatterns, qttools, qtwebkit, libGL, fontconfig, openssl, poppler +{ stdenv, lib, fetchFromGitHub, fetchpatch, copyDesktopItems, makeDesktopItem, qmake +, qtbase, qtxmlpatterns, qttools, qtwebengine, libGL, fontconfig, openssl, poppler, wrapQtAppsHook , ffmpeg, libva, alsa-lib, SDL, x264, libvpx, libvorbis, libtheora, libogg , libopus, lame, fdk_aac, libass, quazip, libXext, libXfixes }: let - importer = mkDerivation rec { + importer = stdenv.mkDerivation rec { pname = "openboard-importer"; version = "unstable-2016-10-08"; @@ -16,44 +16,38 @@ let }; nativeBuildInputs = [ qmake ]; + buildInputs = [ qtbase ]; + dontWrapQtApps = true; installPhase = '' install -Dm755 OpenBoardImporter $out/bin/OpenBoardImporter ''; }; -in mkDerivation rec { +in stdenv.mkDerivation rec { pname = "openboard"; - version = "1.6.1"; + version = "unstable-2022-11-28"; src = fetchFromGitHub { owner = "OpenBoard-org"; repo = "OpenBoard"; - rev = "v${version}"; - sha256 = "sha256-OlGXGIMghil/GG6eso20+CWo/hCjarXGs6edXX9pc/M="; + rev = "9de37af2df1a7c0d88f71c94ab2db1815d082862"; + sha256 = "sha256-TiKrSyxtF1g1bepCoFxoxGOdREXhsMrS3g8uZKSiugg="; }; - patches = [ - # Fix build with poppler >= 22.01 - (fetchpatch { - url = "https://github.com/OpenBoard-org/OpenBoard/commit/3a9b043e0fafec08e4123f362dcb7750f7476b59.patch"; - sha256 = "sha256-yD163FK79HBU1W7m6sLxhfsRo4r/38zYTFWgeyqwU1o="; - }) - ]; - postPatch = '' substituteInPlace OpenBoard.pro \ - --replace '/usr/include/quazip' '${quazip}/include/QuaZip-Qt5-${quazip.version}/quazip' \ + --replace '/usr/include/quazip5' '${quazip}/include/QuaZip-Qt5-${quazip.version}/quazip' \ --replace '-lquazip5' '-lquazip1-qt5' \ --replace '/usr/include/poppler' '${poppler.dev}/include/poppler' ''; - nativeBuildInputs = [ qmake copyDesktopItems ]; + nativeBuildInputs = [ qmake copyDesktopItems wrapQtAppsHook ]; buildInputs = [ qtbase qtxmlpatterns qttools - qtwebkit + qtwebengine libGL fontconfig openssl diff --git a/third_party/nixpkgs/pkgs/applications/graphics/rnote/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/rnote/default.nix index 560c5c6a49..a7b96c4227 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/rnote/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/rnote/default.nix @@ -23,20 +23,20 @@ stdenv.mkDerivation rec { pname = "rnote"; - version = "0.5.9"; + version = "0.5.10"; src = fetchFromGitHub { owner = "flxzt"; repo = "rnote"; rev = "v${version}"; fetchSubmodules = true; - hash = "sha256-Sy8EHl4UuDMwRAKDkl7njD9GSzKpy1Cfsgw53On+nxo="; + hash = "sha256-k1Ov35cz2U39yuIYIr9MW6M/A8MNasoybELC4U3xok0="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-Pe4lNcvJNELAitaGY56EUJ8iN7Dkh8DoUpA/t+aRuqk="; + hash = "sha256-MsLpZl8AvF2BJU6PfC8BmTADR7T3e7+HstHQa+YYJFo="; }; nativeBuildInputs = [ @@ -71,8 +71,8 @@ stdenv.mkDerivation rec { postPatch = '' pushd build-aux - chmod +x meson_post_install.py - patchShebangs meson_post_install.py + chmod +x cargo_build.py meson_post_install.py + patchShebangs cargo_build.py meson_post_install.py substituteInPlace meson_post_install.py --replace "gtk-update-icon-cache" "gtk4-update-icon-cache" popd ''; diff --git a/third_party/nixpkgs/pkgs/applications/graphics/tesseract/tesseract5.nix b/third_party/nixpkgs/pkgs/applications/graphics/tesseract/tesseract5.nix index c3dfab7abe..a1b92e6f54 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/tesseract/tesseract5.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/tesseract/tesseract5.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "tesseract"; - version = "5.2.0"; + version = "5.3.0"; src = fetchFromGitHub { owner = "tesseract-ocr"; repo = "tesseract"; rev = version; - sha256 = "sha256-SvnV6sY+66ozOvgznTE6Gd/GFx/NfugpkpgeANMoUTU="; + sha256 = "sha256-Y+RZOnBCjS8XrWeFA4ExUxwsuWA0DndNtpIWjtRi1G8="; }; enableParallelBuilding = true; diff --git a/third_party/nixpkgs/pkgs/applications/graphics/vengi-tools/default.nix b/third_party/nixpkgs/pkgs/applications/graphics/vengi-tools/default.nix index a7b289e33b..bbee8671cc 100644 --- a/third_party/nixpkgs/pkgs/applications/graphics/vengi-tools/default.nix +++ b/third_party/nixpkgs/pkgs/applications/graphics/vengi-tools/default.nix @@ -29,13 +29,13 @@ stdenv.mkDerivation rec { pname = "vengi-tools"; - version = "0.0.22"; + version = "0.0.23"; src = fetchFromGitHub { owner = "mgerhardy"; repo = "vengi"; rev = "v${version}"; - sha256 = "sha256-OlOnr1Spy8kdie9CyLVOQkY1+ib6Uwcd/xP5TSaZkYg="; + sha256 = "sha256-wRqQ7x6eQTrzFU++Qgq/7NXXo5F1onlZBdQ9ttNvvEw="; }; nativeBuildInputs = [ @@ -106,7 +106,5 @@ stdenv.mkDerivation rec { license = [ licenses.mit licenses.cc-by-sa-30 ]; maintainers = with maintainers; [ fgaz ]; platforms = platforms.all; - # Requires SDK 10.14 https://github.com/NixOS/nixpkgs/issues/101229 - broken = stdenv.isDarwin && stdenv.isx86_64; }; } diff --git a/third_party/nixpkgs/pkgs/applications/maui/default.nix b/third_party/nixpkgs/pkgs/applications/maui/default.nix index 3cd8b56015..6f045bda65 100644 --- a/third_party/nixpkgs/pkgs/applications/maui/default.nix +++ b/third_party/nixpkgs/pkgs/applications/maui/default.nix @@ -64,6 +64,7 @@ let # libraries mauikit = callPackage ./mauikit.nix { }; mauikit-accounts = callPackage ./mauikit-accounts.nix { }; + mauikit-calendar = callPackage ./mauikit-calendar.nix { }; mauikit-filebrowsing = callPackage ./mauikit-filebrowsing.nix { }; mauikit-imagetools = callPackage ./mauikit-imagetools.nix { }; mauikit-texteditor = callPackage ./mauikit-texteditor.nix { }; diff --git a/third_party/nixpkgs/pkgs/applications/maui/mauikit-calendar.nix b/third_party/nixpkgs/pkgs/applications/maui/mauikit-calendar.nix new file mode 100644 index 0000000000..508319f161 --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/maui/mauikit-calendar.nix @@ -0,0 +1,36 @@ +{ lib +, mkDerivation +, cmake +, extra-cmake-modules +, mauikit +, qtquickcontrols2 +, akonadi +, akonadi-contacts +, calendarsupport +, eventviews +}: + +mkDerivation { + pname = "mauikit-calendar"; + + nativeBuildInputs = [ + cmake + extra-cmake-modules + ]; + + buildInputs = [ + akonadi + akonadi-contacts + calendarsupport + eventviews + mauikit + qtquickcontrols2 + ]; + + meta = with lib; { + homepage = "https://invent.kde.org/maui/mauikit-calendar"; + description = "Calendar support components for Maui applications"; + license = licenses.lgpl21Plus; + maintainers = with maintainers; [ onny ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/misc/1password-gui/default.nix b/third_party/nixpkgs/pkgs/applications/misc/1password-gui/default.nix index e6cf00d669..3c08f1d8a9 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/1password-gui/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/1password-gui/default.nix @@ -9,43 +9,43 @@ let pname = "1password"; - version = if channel == "stable" then "8.9.8" else "8.9.10-1.BETA"; + version = if channel == "stable" then "8.9.10" else "8.9.12-4.BETA"; sources = { stable = { x86_64-linux = { url = "https://downloads.1password.com/linux/tar/stable/x86_64/1password-${version}.x64.tar.gz"; - sha256 = "sha256-s5GFGsSelnvqdoEgCzU88BG0dc4bUG4IX3fbeciIPIk="; + sha256 = "sha256-aoa00W5zvZQeHKd2Eqyrxl5Z1PwLMHc5lkMUskLiD74="; }; aarch64-linux = { url = "https://downloads.1password.com/linux/tar/stable/aarch64/1password-${version}.arm64.tar.gz"; - sha256 = "sha256-wNF9jwHTxuojFQ+s05jhb7dFihE/36cadaBONqrMYF0="; + sha256 = "sha256-Zt64UGKI3+DayS6XP7jTE+pxv52tUUZbUHiuzjcm1JI="; }; x86_64-darwin = { url = "https://downloads.1password.com/mac/1Password-${version}-x86_64.zip"; - sha256 = "sha256-Ok0M6jPZ513iTE646PDPu+dK6Y3b/J8oejJQQkQMS2w="; + sha256 = "sha256-sx9eASpMcgkIH1GRzJMqSQa5Y5GJlYU/20CZFyFK+OU="; }; aarch64-darwin = { url = "https://downloads.1password.com/mac/1Password-${version}-aarch64.zip"; - sha256 = "sha256-zocY/0IgiGwuY/ZrMbip34HoRp90ATWRpfAIRhyH9M8="; + sha256 = "sha256-Z1cEynO9iWZra542CVGmefrTNerMe13OcTAzWXNi8jI="; }; }; beta = { x86_64-linux = { url = "https://downloads.1password.com/linux/tar/beta/x86_64/1password-${version}.x64.tar.gz"; - sha256 = "sha256-fW+9mko1OZ5zlTnbZucOjvjus8KVZA4Mcga/4HJyJL4="; + sha256 = "sha256-/WXaLINqLFLft+wrmr+fV0kM9qS5w4etFiGltnzoVdo="; }; aarch64-linux = { url = "https://downloads.1password.com/linux/tar/beta/aarch64/1password-${version}.arm64.tar.gz"; - sha256 = "sha256-jczDhKMCEHjE5yXr5jczSalGa4pVFs7V8BcIhueT88M="; + sha256 = "sha256-Zv9uHkFCZ0flBMAwQBjNhqFWhAXKyHBfZk733hbSag4="; }; x86_64-darwin = { url = "https://downloads.1password.com/mac/1Password-${version}-x86_64.zip"; - sha256 = "sha256-apgXMoZ7yNtUgf6efuSjAK6TGFR230FMK4j95OoXgwQ="; + sha256 = "sha256-Vryk6nMQY+0NIgwJkZ2j3vrxyhrzxbe96jbyoNbPIR0="; }; aarch64-darwin = { url = "https://downloads.1password.com/mac/1Password-${version}-aarch64.zip"; - sha256 = "sha256-tdGu648joHu5E8ECU1TpkxgfU6ZMHlJAy+VcNDtIscA="; + sha256 = "sha256-74iOaNkuPRKUsTNNd7UTpy5ahjoMmxiNT84Op5ztRGk="; }; }; }; diff --git a/third_party/nixpkgs/pkgs/applications/misc/1password/default.nix b/third_party/nixpkgs/pkgs/applications/misc/1password/default.nix index 5498651cfe..ac40822132 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/1password/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/1password/default.nix @@ -12,12 +12,12 @@ let if extension == "zip" then fetchzip args else fetchurl args; pname = "1password-cli"; - version = "2.9.1"; + version = "2.11.0"; sources = rec { - aarch64-linux = fetch "linux_arm64" "sha256-sFh3jIGknR7RA3/pckvBkFvVoxYfXqYuyUJuc/AfecU=" "zip"; - i686-linux = fetch "linux_386" "sha256-JbBjAdGRtpwkk1svoyNw22BGbslwD8ZuNJRihUoFMP4=" "zip"; - x86_64-linux = fetch "linux_amd64" "sha256-yUo8LhT9iTl1z5+Cs9/E/YPMrnnimhFK9A1b1og0TSA=" "zip"; - aarch64-darwin = fetch "apple_universal" "sha256-IFaLcMXOLc0oZIWVOaDuyUmUxJc+Keeg77RR/SlCGxI=" "pkg"; + aarch64-linux = fetch "linux_arm64" "sha256-UCPF+tj1ELzLO4+UAYS/SS0i645oO55grbGGAhe7zBE=" "zip"; + i686-linux = fetch "linux_386" "sha256-7vCCOKMSc2vrwSpAO5hYgdz/e6bveG0liG7fjbWge6c=" "zip"; + x86_64-linux = fetch "linux_amd64" "sha256-mtD1caAc0PIFN8L+pw5tO0Tkg+JD99xBUvPwejVgVwU=" "zip"; + aarch64-darwin = fetch "apple_universal" "sha256-5oZQEAnRPgE9GABoR0UCr6qjUwAdtFADoonJIeRHGdE=" "pkg"; x86_64-darwin = aarch64-darwin; }; platforms = builtins.attrNames sources; diff --git a/third_party/nixpkgs/pkgs/applications/misc/ArchiSteamFarm/default.nix b/third_party/nixpkgs/pkgs/applications/misc/ArchiSteamFarm/default.nix index 878924c20e..7896604b0e 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/ArchiSteamFarm/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/ArchiSteamFarm/default.nix @@ -25,9 +25,6 @@ buildDotnetModule rec { nugetDeps = ./deps.nix; - # Without this dotnet attempts to restore for Windows targets, which it cannot find the dependencies for - dotnetRestoreFlags = [ "--runtime ${dotnetCorePackages.sdk_6_0.systemToDotnetRid stdenvNoCC.targetPlatform.system}" ]; - projectFile = "ArchiSteamFarm.sln"; executables = [ "ArchiSteamFarm" ]; diff --git a/third_party/nixpkgs/pkgs/applications/misc/albert/default.nix b/third_party/nixpkgs/pkgs/applications/misc/albert/default.nix index 84499448a4..1eb648bf18 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/albert/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/albert/default.nix @@ -55,9 +55,7 @@ stdenv.mkDerivation rec { done ''; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "A fast and flexible keyboard launcher"; diff --git a/third_party/nixpkgs/pkgs/applications/misc/appeditor/default.nix b/third_party/nixpkgs/pkgs/applications/misc/appeditor/default.nix index 9e38a208e1..1362bab0af 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/appeditor/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/appeditor/default.nix @@ -53,9 +53,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/misc/bottles/default.nix b/third_party/nixpkgs/pkgs/applications/misc/bottles/default.nix index 2483bd3471..e39612f9ee 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/bottles/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/bottles/default.nix @@ -28,13 +28,13 @@ }: python3Packages.buildPythonApplication rec { pname = "bottles-unwrapped"; - version = "2022.12.14"; + version = "2022.12.14.1"; src = fetchFromGitHub { owner = "bottlesdevs"; repo = "bottles"; rev = version; - sha256 = "sha256-G2FQy+mea/+2RjK/WjLeX+7TP+HU6fCUFYuprFGKEyw="; + sha256 = "sha256-hoWyXCP7/0m8akUGBJyuF2yQcRKR8C7MDBLUdPdtBgE="; }; patches = [ ./vulkan_icd.patch ]; diff --git a/third_party/nixpkgs/pkgs/applications/misc/bottles/fhsenv.nix b/third_party/nixpkgs/pkgs/applications/misc/bottles/fhsenv.nix index dfb0d36f64..43923c99ea 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/bottles/fhsenv.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/bottles/fhsenv.nix @@ -2,6 +2,7 @@ , buildFHSUserEnvBubblewrap , symlinkJoin , bottles-unwrapped +, gst_all_1 , extraPkgs ? pkgs: [ ] , extraLibraries ? pkgs: [ ] }: @@ -9,6 +10,8 @@ let fhsEnv = { targetPkgs = pkgs: with pkgs; [ bottles-unwrapped + # This only allows to enable the toggle, vkBasalt won't work if not installed with environment.systemPackages (or nix-env) + # See https://github.com/bottlesdevs/Bottles/issues/2401 vkbasalt ] ++ extraPkgs pkgs; @@ -46,6 +49,9 @@ let fhsEnv = { gsm gst_all_1.gstreamer gst_all_1.gst-plugins-base + gst_all_1.gst-plugins-good + gst_all_1.gst-plugins-ugly + gst_all_1.gst-plugins-bad libgphoto2 libjpeg_turbo libkrb5 @@ -83,6 +89,13 @@ let fhsEnv = { zlib # Freetype ] ++ xorgDeps pkgs ++ extraLibraries pkgs; + + profile = '' + # Remove if merged https://github.com/bottlesdevs/Bottles/pull/2415 + export BOTTLES_USE_SYSTEM_GSTREAMER=1 + # Dirty hack, may be related with https://github.com/NixOS/nixpkgs/issues/148007 + export GST_PLUGIN_PATH=${ lib.makeSearchPath "lib/gstreamer-1.0" (with gst_all_1; [ gstreamer gst-plugins-base gst-plugins-good gst-plugins-ugly gst-plugins-bad ]) } + ''; }; in symlinkJoin { diff --git a/third_party/nixpkgs/pkgs/applications/misc/calibre/default.nix b/third_party/nixpkgs/pkgs/applications/misc/calibre/default.nix index 2074addb1b..f9a1faaf03 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/calibre/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/calibre/default.nix @@ -25,6 +25,7 @@ , sqlite , wrapQtAppsHook , xdg-utils +, wrapGAppsHook , unrarSupport ? false }: @@ -71,6 +72,7 @@ stdenv.mkDerivation rec { pkg-config qmake removeReferencesTo + wrapGAppsHook wrapQtAppsHook ]; @@ -169,6 +171,7 @@ stdenv.mkDerivation rec { # Wrap manually dontWrapQtApps = true; + dontWrapGApps = true; # Remove some references to shrink the closure size. This reference (as of # 2018-11-06) was a single string like the following: @@ -178,7 +181,9 @@ stdenv.mkDerivation rec { $out/lib/calibre/calibre/plugins/podofo.so for program in $out/bin/*; do - wrapQtApp $program \ + wrapProgram $program \ + ''${qtWrapperArgs[@]} \ + ''${gappsWrapperArgs[@]} \ --prefix PYTHONPATH : $PYTHONPATH \ --prefix PATH : ${poppler_utils.out}/bin done diff --git a/third_party/nixpkgs/pkgs/applications/misc/cask-server/default.nix b/third_party/nixpkgs/pkgs/applications/misc/cask-server/default.nix new file mode 100644 index 0000000000..8a237a14bd --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/misc/cask-server/default.nix @@ -0,0 +1,36 @@ +{ lib +, pkgs +, mkDerivation +, fetchFromGitHub +, cmake +, extra-cmake-modules +}: + +mkDerivation rec { + pname = "cask-server"; + version = "0.5.6"; + + src = fetchFromGitHub { + owner = "Nitrux"; + repo = pname; + rev = "refs/tags/v${version}"; + sha256 = "sha256-/dDrJcyp6+r6G3E0KPOEH0hEY9C5XIg1z2gRZV3GZcg="; + }; + + nativeBuildInputs = [ + cmake + extra-cmake-modules + ]; + + meta = with lib; { + description = "Public server and API to interface with Cask features"; + homepage = "https://github.com/Nitrux/cask-server"; + license = with licenses; [ + bsd2 + lgpl21Plus + cc0 + ]; + maintainers = with maintainers; [ onny ]; + }; + +} diff --git a/third_party/nixpkgs/pkgs/applications/misc/cipher/default.nix b/third_party/nixpkgs/pkgs/applications/misc/cipher/default.nix index fb373938d5..8486db6f7f 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/cipher/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/cipher/default.nix @@ -49,9 +49,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/misc/darkman/default.nix b/third_party/nixpkgs/pkgs/applications/misc/darkman/default.nix index 0114b353f2..04b1af9bc2 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b/third_party/nixpkgs/pkgs/applications/misc/dmenu-rs/default.nix @@ -0,0 +1,89 @@ +{ stdenv +, rustPlatform +, lib +, fetchFromGitHub +, cargo +, expat +, fontconfig +, libXft +, libXinerama +, m4 +, pkg-config +, python3 +}: + +# The dmenu-rs package has extensive plugin support. However, this derivation +# only builds the package with the default set of plugins. If you'd like to +# further customize dmenu-rs you can build it from the source. +# See: https://github.com/Shizcow/dmenu-rs#plugins +stdenv.mkDerivation rec { + pname = "dmenu-rs"; + version = "5.5.1"; + + src = fetchFromGitHub { + owner = "Shizcow"; + repo = pname; + rev = version; + sha256 = "sha256-WpDqBjIZ5ESnoRtWZmvm+gNTLKqxL4IibRVCj0yRIFM="; + }; + + nativeBuildInputs = [ + cargo + m4 + pkg-config + python3 + rustPlatform.bindgenHook + rustPlatform.cargoSetupHook + ]; + + buildInputs = [ + expat + fontconfig + libXft + libXinerama + ]; + + # The dmenu-rs repository does not include a Cargo.lock because of its + # dynamic build and plugin support. Generating it with make and checking it + # in to nixpkgs here was the easiest way to supply it to rustPlatform. + # See: https://github.com/Shizcow/dmenu-rs/issues/34#issuecomment-757415584 + cargoDeps = rustPlatform.importCargoLock { + lockFile = ./Cargo.lock; + }; + + # The rust-xcb dependency dynamically generates rust code at build time. + # This derivation uses nixpkgs rust functions that vendor each cargo + # dependency's source code into the READ-ONLY nix store. To avoid the code + # generation step failing, we copy the rust-xcb source out of the nix store + # and make it writeable. Also, we remove the build's hardcoded c compiler. + # See: https://github.com/rust-x-bindings/rust-xcb/tree/v0.8.2 + postPatch = '' + substituteInPlace config.mk --replace "clang" "" + + chmod +w "$NIX_BUILD_TOP/cargo-vendor-dir" + mkdir -p "$NIX_BUILD_TOP/cargo-vendor-dir/xcb-0.8.2-readwrite" + cp -r --no-preserve=mod "$NIX_BUILD_TOP/cargo-vendor-dir/xcb-0.8.2/." "$NIX_BUILD_TOP/cargo-vendor-dir/xcb-0.8.2-readwrite" + unlink "$NIX_BUILD_TOP/cargo-vendor-dir/xcb-0.8.2" + mv "$NIX_BUILD_TOP/cargo-vendor-dir/xcb-0.8.2-readwrite" "$NIX_BUILD_TOP/cargo-vendor-dir/xcb-0.8.2" + + cp ${./Cargo.lock} src/Cargo.lock + ''; + + cargoRoot = "src"; + + installFlags = [ "PREFIX=$(out)" ]; + + # Running make test requires an X11 server. It also runs dmenu, which then + # hangs on user input. It was too hard to figure out how to run these tests + # deterministically. See the original PR for some discussion on this. + doCheck = false; + + meta = with lib; { + description = "A pixel perfect port of dmenu, rewritten in Rust with extensive plugin support"; + homepage = "https://github.com/Shizcow/dmenu-rs"; + license = with licenses; [ gpl3Only ]; + maintainers = with maintainers; [ benjaminedwardwebb ]; + platforms = platforms.linux; + broken = (stdenv.isLinux && stdenv.isAarch64); + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/misc/eaglemode/default.nix b/third_party/nixpkgs/pkgs/applications/misc/eaglemode/default.nix index 285c527094..056f3a4606 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/eaglemode/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/eaglemode/default.nix @@ -1,24 +1,26 @@ -{ lib, stdenv, fetchurl, perl, libX11, libXinerama, libjpeg, libpng, libtiff, pkg-config, -librsvg, glib, gtk2, libXext, libXxf86vm, poppler, xine-lib, ghostscript, makeWrapper }: +{ lib, stdenv, fetchurl, perl, libX11, libXinerama, libjpeg, libpng, libtiff, libwebp, pkg-config, +librsvg, glib, gtk2, libXext, libXxf86vm, poppler, vlc, ghostscript, makeWrapper, tzdata }: stdenv.mkDerivation rec { pname = "eaglemode"; - version = "0.94.2"; + version = "0.96.0"; src = fetchurl { url = "mirror://sourceforge/eaglemode/${pname}-${version}.tar.bz2"; - sha256 = "10zxih7gmyhq0az1mnsw2x563l4bbwcns794s4png8rf4d6hjszm"; + hash = "sha256-aMVXJpfws9rh2Eaa/EzSLwtwvn0pVJlEbhxzvXME1hs="; }; + # Fixes "Error: No time zones found." on the clock + postPatch = '' + substituteInPlace src/emClock/emTimeZonesModel.cpp --replace "/usr/share/zoneinfo" "${tzdata}/share/zoneinfo" + ''; + nativeBuildInputs = [ pkg-config makeWrapper ]; - buildInputs = [ perl libX11 libXinerama libjpeg libpng libtiff - librsvg glib gtk2 libXxf86vm libXext poppler xine-lib ghostscript ]; + buildInputs = [ perl libX11 libXinerama libjpeg libpng libtiff libwebp + librsvg glib gtk2 libXxf86vm libXext poppler vlc ghostscript ]; # The program tries to dlopen Xxf86vm, Xext and Xinerama, so we use the # trick on NIX_LDFLAGS and dontPatchELF to make it find them. - # I use 'yes y' to skip a build error linking with xine-lib, - # because xine stopped exporting "_x_vo_new_port" - # https://sourceforge.net/projects/eaglemode/forums/forum/808824/topic/5115261 buildPhase = '' export NIX_LDFLAGS="$NIX_LDFLAGS -lXxf86vm -lXext -lXinerama" perl make.pl build @@ -36,8 +38,9 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "http://eaglemode.sourceforge.net"; description = "Zoomable User Interface"; + changelog = "https://eaglemode.sourceforge.net/ChangeLog.html"; license = licenses.gpl3; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ chuangzhu ]; platforms = platforms.linux; }; } diff --git a/third_party/nixpkgs/pkgs/applications/misc/electrum/default.nix b/third_party/nixpkgs/pkgs/applications/misc/electrum/default.nix index 9421cce1d8..bab227aee7 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/electrum/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/electrum/default.nix @@ -141,7 +141,7 @@ python3.pkgs.buildPythonApplication { }; meta = with lib; { - description = "A lightweight Bitcoin wallet"; + description = "Lightweight Bitcoin wallet"; longDescription = '' An easy-to-use Bitcoin client featuring wallets generated from mnemonic seeds (in addition to other, more advanced, wallet options) diff --git a/third_party/nixpkgs/pkgs/applications/misc/electrum-grs/default.nix b/third_party/nixpkgs/pkgs/applications/misc/electrum/grs.nix similarity index 88% rename from third_party/nixpkgs/pkgs/applications/misc/electrum-grs/default.nix rename to third_party/nixpkgs/pkgs/applications/misc/electrum/grs.nix index e07e337477..a4166a3fe6 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/electrum-grs/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/electrum/grs.nix @@ -63,7 +63,13 @@ python3.pkgs.buildPythonApplication { qdarkstyle ]; - preBuild = '' + postPatch = '' + # make compatible with protobuf4 by easing dependencies ... + substituteInPlace ./contrib/requirements/requirements.txt \ + --replace "protobuf>=3.12,<4" "protobuf>=3.12" + # ... and regenerating the paymentrequest_pb2.py file + protoc --python_out=. electrum_grs/paymentrequest.proto + substituteInPlace ./electrum_grs/ecc_fast.py \ --replace ${libsecp256k1_name} ${secp256k1}/lib/libsecp256k1${stdenv.hostPlatform.extensions.sharedLibrary} '' + (if enableQt then '' @@ -85,6 +91,9 @@ python3.pkgs.buildPythonApplication { wrapQtApp $out/bin/electrum-grs ''; + # the tests are currently broken + doCheck = false; + postCheck = '' $out/bin/electrum-grs help >/dev/null ''; diff --git a/third_party/nixpkgs/pkgs/applications/misc/electrum/ltc.nix b/third_party/nixpkgs/pkgs/applications/misc/electrum/ltc.nix index c9332be230..5029581ac8 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/electrum/ltc.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/electrum/ltc.nix @@ -7,16 +7,6 @@ , zbar , secp256k1 , enableQt ? true -# for updater.nix -, writeScript -, common-updater-scripts -, bash -, coreutils -, curl -, gnugrep -, gnupg -, gnused -, nix }: let @@ -29,6 +19,7 @@ let libzbar_name = if stdenv.isLinux then "libzbar.so.0" + else if stdenv.isDarwin then "libzbar.0.dylib" else "libzbar${stdenv.hostPlatform.extensions.sharedLibrary}"; # Not provided in official source releases, which are what upstream signs. @@ -131,21 +122,6 @@ python3.pkgs.buildPythonApplication { $out/bin/electrum-ltc help >/dev/null ''; - passthru.updateScript = import ./update.nix { - inherit lib; - inherit - writeScript - common-updater-scripts - bash - coreutils - curl - gnupg - gnugrep - gnused - nix - ; - }; - meta = with lib; { description = "Lightweight Litecoin Client"; longDescription = '' diff --git a/third_party/nixpkgs/pkgs/applications/misc/formatter/default.nix b/third_party/nixpkgs/pkgs/applications/misc/formatter/default.nix index 440022da6e..f53ea0f030 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/formatter/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/formatter/default.nix @@ -63,9 +63,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/misc/free42/default.nix b/third_party/nixpkgs/pkgs/applications/misc/free42/default.nix index f1df7445fb..71145c6809 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/free42/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/free42/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "free42"; - version = "3.0.16"; + version = "3.0.17"; src = fetchFromGitHub { owner = "thomasokken"; repo = pname; rev = "v${version}"; - hash = "sha256-hL4Ytu9zf8x+H/TuvJ3m0E3d8gMZFIDogWEYlaOap+g="; + hash = "sha256-3G2vRPupZtZKF1VazNQGa1AplqFzhI5M+olyeJ26kXo="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/misc/gallery-dl/default.nix b/third_party/nixpkgs/pkgs/applications/misc/gallery-dl/default.nix index edd5f491cc..2ec4d7df24 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/gallery-dl/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/gallery-dl/default.nix @@ -2,13 +2,13 @@ buildPythonApplication rec { pname = "gallery-dl"; - version = "1.24.1"; + version = "1.24.2"; format = "setuptools"; src = fetchPypi { inherit version; pname = "gallery_dl"; - sha256 = "sha256-pjm410aT4+Lj3PBAlibmglNPGlmBgkRoHAg7JrIDp0s="; + sha256 = "sha256-KqDprKoqpbNpUrM7nAYj71cuMh6U3s65kqVTW2cHeLc="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/misc/gnome-recipes/default.nix b/third_party/nixpkgs/pkgs/applications/misc/gnome-recipes/default.nix index 04526ec346..818ef8fb96 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/gnome-recipes/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/gnome-recipes/default.nix @@ -64,9 +64,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/misc/gpxsee/default.nix b/third_party/nixpkgs/pkgs/applications/misc/gpxsee/default.nix index 8de8e30269..a03107c2af 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/gpxsee/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/gpxsee/default.nix @@ -21,13 +21,13 @@ let in stdenv.mkDerivation rec { pname = "gpxsee"; - version = "11.9"; + version = "11.11"; src = fetchFromGitHub { owner = "tumic0"; repo = "GPXSee"; rev = version; - hash = "sha256-R/Kuk4nRJg3ozNNmzzNDnGcsmBmlk0g9d+F8JwLFz98="; + hash = "sha256-5kT1vcbCc0Fa3ylrcQetth50IQu57upiWRRpub93jlE="; }; patches = (substituteAll { @@ -58,9 +58,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/misc/heimer/default.nix b/third_party/nixpkgs/pkgs/applications/misc/heimer/default.nix index 45ac458222..c3571e01db 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/heimer/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/heimer/default.nix @@ -8,13 +8,13 @@ mkDerivation rec { pname = "heimer"; - version = "3.6.3"; + version = "3.6.4"; src = fetchFromGitHub { owner = "juzzlin"; repo = pname; rev = version; - hash = "sha256-G0prFxKXHiRtV6uVp1Ckym0/rOFxrOHrEI5K9hkWjfU="; + hash = "sha256-hKVBPSWIbKXMEmk9C7k+3NBqLwYybN6Jql9qigIx4jE="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/misc/hstr/default.nix b/third_party/nixpkgs/pkgs/applications/misc/hstr/default.nix index bb31be1ad2..e7ad05b508 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/hstr/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/hstr/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "hstr"; - version = "2.5"; + version = "2.6"; src = fetchFromGitHub { owner = "dvorka"; repo = "hstr"; rev = version; - sha256 = "sha256-qIMnU+gRR3HPAOrrrduN68R5E8ZJKROfZ0sEHL0E4XU="; + sha256 = "sha256-yfaDISnTDb20DgMOvh6jJYisV6eL/Mp5jafnWEnFG8c="; }; nativeBuildInputs = [ autoreconfHook pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/applications/misc/hugo/default.nix b/third_party/nixpkgs/pkgs/applications/misc/hugo/default.nix index a92a6801ba..9985a1a872 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/hugo/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/hugo/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "hugo"; - version = "0.108.0"; + version = "0.109.0"; src = fetchFromGitHub { owner = "gohugoio"; repo = pname; rev = "v${version}"; - sha256 = "sha256-MbpBGqu7IwQCf9DjSfIDi25ZGJYTI6xxSk9wPWxychw="; + sha256 = "sha256-Eak4sU8UwzPQ5iuoNX+KrAJdZ6ZvBdDyJx4xeQI4sjY="; }; - vendorSha256 = "sha256-qFqSpQExz4u1ngjpt2Li6dk/qz4DCKEY9IcFFCna5is="; + vendorSha256 = "sha256-0m5flwvchExP1IDAuE/oTB2eUEbq5KCE8Zvzp5e7yZ8="; doCheck = false; diff --git a/third_party/nixpkgs/pkgs/applications/misc/ipmiview/default.nix b/third_party/nixpkgs/pkgs/applications/misc/ipmiview/default.nix index fbc436c882..d1162052ce 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/ipmiview/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/ipmiview/default.nix @@ -13,12 +13,12 @@ stdenv.mkDerivation rec { pname = "IPMIView"; - version = "2.20.0"; - buildVersion = "220309"; + version = "2.21.0"; + buildVersion = "221118"; src = fetchurl { url = "https://www.supermicro.com/wftp/utility/IPMIView/Linux/IPMIView_${version}_build.${buildVersion}_bundleJRE_Linux_x64.tar.gz"; - hash = "sha256-qtklBMuK0jb9Ye0IkYM2WYFRMAfZg9tk08a1JQ64cjA="; + hash = "sha256-ZN0vadGbjGj9U2wPqvHLjS9fsk3DNCbXoNvzUfnn8IM="; }; nativeBuildInputs = [ patchelf makeWrapper ]; diff --git a/third_party/nixpkgs/pkgs/applications/misc/joplin-desktop/default.nix b/third_party/nixpkgs/pkgs/applications/misc/joplin-desktop/default.nix index d712712908..4cec4a97fe 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/joplin-desktop/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/joplin-desktop/default.nix @@ -2,7 +2,7 @@ let pname = "joplin-desktop"; - version = "2.8.8"; + version = "2.9.17"; name = "${pname}-${version}"; inherit (stdenv.hostPlatform) system; @@ -16,8 +16,8 @@ let src = fetchurl { url = "https://github.com/laurent22/joplin/releases/download/v${version}/Joplin-${version}.${suffix}"; sha256 = { - x86_64-linux = "0ivljlw6kdpg94q9syi11zmk54w06m8j3zicx9nppqg720fw4zv3"; - x86_64-darwin = "0gpr3zi6z98pkg8hsvcmpck754cph53kmgl3bhp3zmmmfj0kxjhs"; + x86_64-linux = "sha256-kdmxSXKHIyVdvVNEoZkSIQlOkTt97bpAdrV0sxhL1Ug="; + x86_64-darwin = "sha256-o3Q5foEuBi4OTHr6mP0ZXOxkkUw/c/jXaZOtztQf0gM="; }.${system} or throwSystem; }; diff --git a/third_party/nixpkgs/pkgs/applications/misc/jquake/default.nix b/third_party/nixpkgs/pkgs/applications/misc/jquake/default.nix index 22e6764bee..36b301dc43 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/jquake/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/jquake/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { pname = "jquake"; - version = "1.8.1"; + version = "1.8.4"; src = fetchurl { - url = "https://fleneindre.github.io/downloads/JQuake_${version}_linux.zip"; - sha256 = "sha256-fIxCcqpv0KAXUBbyinTXr/fkAcufVtpr9FUTJkXSgTs="; + url = "https://github.com/fleneindre/fleneindre.github.io/raw/master/downloads/JQuake_${version}_linux.zip"; + sha256 = "sha256-oIYkYmI8uG4zjnm1Jq1mzIcSwRlKbWJqvACygQyp9sA="; }; nativeBuildInputs = [ unzip copyDesktopItems ]; @@ -58,8 +58,8 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Real-time earthquake map of Japan"; homepage = "https://jquake.net"; - downloadPage = "https://jquake.net/?down"; - changelog = "https://jquake.net/?docu"; + downloadPage = "https://jquake.net/en/terms.html?os=linux&arch=any"; + changelog = "https://jquake.net/en/changelog.html"; maintainers = with maintainers; [ nessdoor ]; sourceProvenance = with sourceTypes; [ binaryBytecode ]; license = licenses.unfree; diff --git a/third_party/nixpkgs/pkgs/applications/misc/keepassx/community.nix b/third_party/nixpkgs/pkgs/applications/misc/keepassx/community.nix index 0275760af4..2cdaf78c02 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/keepassx/community.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/keepassx/community.nix @@ -1,4 +1,5 @@ -{ lib, stdenv +{ lib +, stdenv , fetchFromGitHub , cmake , qttools @@ -81,8 +82,9 @@ stdenv.mkDerivation rec { export LC_ALL="en_US.UTF-8" export QT_QPA_PLATFORM=offscreen export QT_PLUGIN_PATH="${qtbase.bin}/${qtbase.qtPluginPrefix}" - # testcli and testgui are flaky - skip them both - make test ARGS+="-E 'testcli|testgui' --output-on-failure" + # testcli, testgui and testkdbx4 are flaky - skip them all + # testautotype on darwin throws "QWidget: Cannot create a QWidget without QApplication" + make test ARGS+="-E 'testcli|testgui${lib.optionalString stdenv.isDarwin "|testautotype|testkdbx4"}' --output-on-failure" runHook postCheck ''; @@ -92,6 +94,8 @@ stdenv.mkDerivation rec { dontWrapGApps = true; preFixup = '' qtWrapperArgs+=("''${gappsWrapperArgs[@]}") + '' + lib.optionalString stdenv.isDarwin '' + wrapQtApp "$out/Applications/KeePassXC.app/Contents/MacOS/KeePassXC" ''; buildInputs = [ @@ -128,6 +132,5 @@ stdenv.mkDerivation rec { license = licenses.gpl2Plus; maintainers = with maintainers; [ jonafato turion srapenne ]; platforms = platforms.linux ++ platforms.darwin; - broken = stdenv.isDarwin; # see to https://github.com/NixOS/nixpkgs/issues/172165 }; } diff --git a/third_party/nixpkgs/pkgs/applications/misc/lswt/default.nix b/third_party/nixpkgs/pkgs/applications/misc/lswt/default.nix new file mode 100644 index 0000000000..d6bdf77a8b --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/misc/lswt/default.nix @@ -0,0 +1,28 @@ +{ lib, stdenv, fetchFromSourcehut, nixos, wayland }: + +stdenv.mkDerivation rec { + pname = "lswt"; + version = "1.0.4"; + + src = fetchFromSourcehut { + owner = "~leon_plickat"; + repo = pname; + rev = "v${version}"; + hash = "sha256-Orwa7sV56AeznEcq/Xj5qj4PALMxq0CI+ZnXuY4JYE0="; + }; + + buildInputs = [ wayland ]; + + makeFlags = [ + "DESTDIR=${placeholder "out"}" + "PREFIX=" + ]; + + meta = with lib; { + description = "A command that lists Wayland toplevels"; + homepage = "https://sr.ht/~leon_plickat/lswt"; + license = licenses.gpl3Only; + maintainers = with maintainers; [ edrex ]; + platforms = platforms.linux; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/misc/lutris/default.nix b/third_party/nixpkgs/pkgs/applications/misc/lutris/default.nix index f8836f2802..c67ec4cc27 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/lutris/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/lutris/default.nix @@ -48,6 +48,7 @@ , fluidsynth , xorgserver , xorg +, util-linux }: let @@ -68,22 +69,12 @@ let xorgserver xorg.setxkbmap xorg.xkbcomp + # bypass mount suid wrapper which does not work in fhsenv + util-linux ]; - - binPath = lib.makeBinPath requiredTools; - - gstDeps = with gst_all_1; [ - gst-libav - gst-plugins-bad - gst-plugins-base - gst-plugins-good - gst-plugins-ugly - gstreamer - ]; - in buildPythonApplication rec { - pname = "lutris-original"; + pname = "lutris-unwrapped"; version = "0.5.12"; src = fetchFromGitHub { @@ -104,7 +95,14 @@ buildPythonApplication rec { libnotify pango webkitgtk - ] ++ gstDeps; + ] ++ (with gst_all_1; [ + gst-libav + gst-plugins-bad + gst-plugins-base + gst-plugins-good + gst-plugins-ugly + gstreamer + ]); # See `install_requires` in https://github.com/lutris/lutris/blob/master/setup.py propagatedBuildInputs = [ @@ -125,19 +123,20 @@ buildPythonApplication rec { --replace "'libmagic.so.1'" "'${lib.getLib file}/lib/libmagic.so.1'" ''; - checkInputs = [ xvfb-run nose2 flake8 ] ++ requiredTools; - preCheck = "export HOME=$PWD"; checkPhase = '' runHook preCheck + + export HOME=$PWD xvfb-run -s '-screen 0 800x600x24' make test + runHook postCheck ''; # avoid double wrapping dontWrapGApps = true; makeWrapperArgs = [ - "--prefix PATH : ${binPath}" + "--prefix PATH : ${lib.makeBinPath requiredTools}" "\${gappsWrapperArgs[@]}" ]; # needed for glib-schemas to work correctly (will crash on dialogues otherwise) diff --git a/third_party/nixpkgs/pkgs/applications/misc/mangal/default.nix b/third_party/nixpkgs/pkgs/applications/misc/mangal/default.nix index 7e8ea89fe9..b443c16601 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/mangal/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/mangal/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "mangal"; - version = "4.0.4"; + version = "4.0.5"; src = fetchFromGitHub { owner = "metafates"; repo = pname; rev = "v${version}"; - hash = "sha256-U1NmJsh7OuS0/kktmMcIjEaqc1ABtWG0ilSUw0UL8aU="; + hash = "sha256-T0QoHqL07J4Fb95qluYPb0yZYwdr7vDNLlrp7zPhtrA="; }; proxyVendor = true; diff --git a/third_party/nixpkgs/pkgs/applications/misc/mediaelch/default.nix b/third_party/nixpkgs/pkgs/applications/misc/mediaelch/default.nix index 2db12da257..582d3186ea 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/mediaelch/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/mediaelch/default.nix @@ -1,22 +1,27 @@ { lib -, mkDerivation +, stdenv , fetchFromGitHub -, qmake +, cmake , qttools +, wrapQtAppsHook , curl , ffmpeg , libmediainfo , libzen +, qt5compat ? null # qt6 only , qtbase , qtdeclarative , qtmultimedia , qtsvg +, qtwayland , quazip }: - -mkDerivation rec { +let + qtVersion = lib.versions.major qtbase.version; +in +stdenv.mkDerivation rec { pname = "mediaelch"; version = "2.8.18"; @@ -28,20 +33,36 @@ mkDerivation rec { fetchSubmodules = true; }; - nativeBuildInputs = [ qmake qttools ]; - - buildInputs = [ curl ffmpeg libmediainfo libzen qtbase qtdeclarative qtmultimedia qtsvg ]; - - qmakeFlags = [ - "USE_EXTERN_QUAZIP=${quazip}/include/quazip5" + nativeBuildInputs = [ + cmake + qttools + wrapQtAppsHook ]; - postPatch = '' - substituteInPlace MediaElch.pro --replace "/usr" "$out" - ''; + buildInputs = [ + curl + ffmpeg + libmediainfo + libzen + qtbase + qtdeclarative + qtmultimedia + qtsvg + qtwayland + quazip + ] ++ lib.optional (qtVersion == "6") [ + qt5compat + ]; + + cmakeFlags = [ + "-DDISABLE_UPDATER=ON" + "-DUSE_EXTERN_QUAZIP=ON" + "-DMEDIAELCH_FORCE_QT${qtVersion}=ON" + ]; + + # libmediainfo.so.0 is loaded dynamically qtWrapperArgs = [ - # libmediainfo.so.0 is loaded dynamically "--prefix LD_LIBRARY_PATH : ${libmediainfo}/lib" ]; diff --git a/third_party/nixpkgs/pkgs/applications/misc/mob/default.nix b/third_party/nixpkgs/pkgs/applications/misc/mob/default.nix index 1b9300ac3d..3081bea863 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/mob/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/mob/default.nix @@ -9,13 +9,13 @@ buildGoModule rec { pname = "mob"; - version = "4.0.0"; + version = "4.1.1"; src = fetchFromGitHub { owner = "remotemobprogramming"; repo = pname; rev = "v${version}"; - sha256 = "sha256-c6Feex0FGxxOWBEHxe0GqPHv65EwMMdxIeehZUGbl0Q="; + sha256 = "sha256-P3OxqJNhzO/aPC4Nj3vvBy5cxaahQv0IsjlIKya0p1w="; }; vendorSha256 = null; diff --git a/third_party/nixpkgs/pkgs/applications/misc/notejot/default.nix b/third_party/nixpkgs/pkgs/applications/misc/notejot/default.nix index 24877241f9..798c15fffd 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/notejot/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/notejot/default.nix @@ -41,9 +41,7 @@ stdenv.mkDerivation rec { libgee ]; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { homepage = "https://github.com/lainsce/notejot"; diff --git a/third_party/nixpkgs/pkgs/applications/misc/nwg-dock/default.nix b/third_party/nixpkgs/pkgs/applications/misc/nwg-dock/default.nix new file mode 100644 index 0000000000..32361b276b --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/misc/nwg-dock/default.nix @@ -0,0 +1,34 @@ +{ lib +, buildGoModule +, fetchFromGitHub +, pkg-config +, gtk3 +, gtk-layer-shell +}: + +buildGoModule rec { + pname = "nwg-dock"; + version = "0.3.2"; + + src = fetchFromGitHub { + owner = "nwg-piotr"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-X2AhzQsgUWHkPp1YoAxcbq+Oni9C6Yrnyt+Plxya8OI="; + }; + + vendorSha256 = "sha256-5vGfWEBiC3ZJzVTHaOPbaaK/9+yg7Nj0mpbJbYpbY/A="; + + ldflags = [ "-s" "-w" ]; + + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ gtk3 gtk-layer-shell ]; + + meta = with lib; { + description = "GTK3-based dock for sway"; + homepage = "https://github.com/nwg-piotr/nwg-dock"; + license = licenses.mit; + platforms = platforms.linux; + maintainers = with maintainers; [ dit7ya ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/misc/octoprint/default.nix b/third_party/nixpkgs/pkgs/applications/misc/octoprint/default.nix index e20bb4ba42..e63273b131 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/octoprint/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/octoprint/default.nix @@ -200,7 +200,7 @@ let passthru = { python = self.python; - updateScript = nix-update-script { attrPath = "octoprint"; }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/misc/p2pool/default.nix b/third_party/nixpkgs/pkgs/applications/misc/p2pool/default.nix index 2da0374a67..b41b5ffb88 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/p2pool/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/p2pool/default.nix @@ -37,9 +37,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/misc/pdf-quench/default.nix b/third_party/nixpkgs/pkgs/applications/misc/pdf-quench/default.nix index 4255127b3d..0245fadb17 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/pdf-quench/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/pdf-quench/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchFromGitHub, pkgs, python3, wrapGAppsHook}: +{ lib, fetchFromGitHub, pkgs, python3, wrapGAppsHook, gobject-introspection }: python3.pkgs.buildPythonApplication { pname = "pdf-quench"; @@ -11,10 +11,9 @@ python3.pkgs.buildPythonApplication { sha256 = "1rp9rlwr6rarcsxygv5x2c5psgwl6r69k0lsgribgyyla9cf2m7n"; }; - nativeBuildInputs = [ wrapGAppsHook ]; + nativeBuildInputs = [ wrapGAppsHook gobject-introspection ]; buildInputs = with pkgs; [ gtk3 - gobject-introspection goocanvas2 poppler_gi ]; diff --git a/third_party/nixpkgs/pkgs/applications/misc/pdfpc/default.nix b/third_party/nixpkgs/pkgs/applications/misc/pdfpc/default.nix index 9bf5907a23..5678cef8e1 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/pdfpc/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/pdfpc/default.nix @@ -1,16 +1,16 @@ { lib, stdenv, fetchFromGitHub, cmake, pkg-config, vala, gtk3, libgee -, poppler, libpthreadstubs, gstreamer, gst-plugins-base, gst-plugins-good, gst-libav, librsvg, pcre, gobject-introspection, wrapGAppsHook -, webkitgtk, discount, json-glib }: +, poppler, libpthreadstubs, gstreamer, gst-plugins-base, gst-plugins-good, gst-libav, gobject-introspection, wrapGAppsHook +, qrencode, webkitgtk, discount, json-glib }: stdenv.mkDerivation rec { pname = "pdfpc"; - version = "4.5.0"; + version = "4.6.0"; src = fetchFromGitHub { repo = "pdfpc"; owner = "pdfpc"; rev = "v${version}"; - sha256 = "0bmy51w6ypz927hxwp5g7wapqvzqmsi3w32rch6i3f94kg1152ck"; + hash = "sha256-5HFmbVsNajMwo+lBe9kJcJyQGe61N6Oy2CI/WJwmSE4="; }; nativeBuildInputs = [ @@ -22,11 +22,12 @@ stdenv.mkDerivation rec { buildInputs = [ gtk3 libgee poppler - libpthreadstubs librsvg pcre + libpthreadstubs gstreamer gst-plugins-base (gst-plugins-good.override { gtkSupport = true; }) gst-libav + qrencode webkitgtk discount json-glib diff --git a/third_party/nixpkgs/pkgs/applications/misc/pdfstudio/default.nix b/third_party/nixpkgs/pkgs/applications/misc/pdfstudio/default.nix index b1985eed07..f1ce2219ba 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/pdfstudio/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/pdfstudio/default.nix @@ -56,10 +56,10 @@ in pdfstudio2022 = callPackage ./common.nix rec { inherit desktopName longDescription pname program year; - version = "${year}.1.1"; + version = "${year}.1.3"; src = fetchurl { url = "https://download.qoppa.com/pdfstudio/v${year}/PDFStudio_v${dot2dash version}_linux64.deb"; - sha256 = "sha256-OPmNhnkeSvHZZbh4SaMU/vDSLrDdTmMmuSGP2HyzVm4="; + sha256 = "sha256-B3RrftuKsPWUWP9hwnq4i311hgZgwZLqG1pJLdilfQI="; }; extraBuildInputs = [ libgccjit #for libstdc++.so.6 and libgomp.so.1 diff --git a/third_party/nixpkgs/pkgs/applications/misc/process-compose/default.nix b/third_party/nixpkgs/pkgs/applications/misc/process-compose/default.nix index 9ae67caffb..0a6c0d0566 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/process-compose/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/process-compose/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "process-compose"; - version = "0.29.0"; + version = "0.29.1"; src = fetchFromGitHub { owner = "F1bonacc1"; repo = pname; rev = "v${version}"; - hash = "sha256-FxOgddgwehzrteMBjTrdksKpTR43VZV7PHI7NClZ3OU="; + hash = "sha256-FB0PjvPBfbytIXwYs+eT9PMnKX/yymrajlJ42FDlMFs="; }; ldflags = [ diff --git a/third_party/nixpkgs/pkgs/applications/misc/remarkable/rmapi/default.nix b/third_party/nixpkgs/pkgs/applications/misc/remarkable/rmapi/default.nix index aa2b1af194..2a3fbb4470 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/remarkable/rmapi/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/remarkable/rmapi/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "rmapi"; - version = "0.0.22.1"; + version = "0.0.23"; src = fetchFromGitHub { owner = "juruen"; repo = "rmapi"; rev = "v${version}"; - sha256 = "sha256-tYGlI7p5KAskN+Y6vvBEm4+s9rKtL4TN43N/btN27UI="; + sha256 = "sha256-x6J3lQqSiqROLFB+S6nY/ONSluc7ffqJcK93bQpsjIs="; }; - vendorSha256 = "sha256-LmKcHV0aq7NDEwaL+u8zXkbKzzdWD8zmnAGw5xShDYo="; + vendorSha256 = "sha256-Id2RaiSxthyR6egDQz2zulbSZ4STRTaA3yQIr6Mx9kg="; doCheck = false; diff --git a/third_party/nixpkgs/pkgs/applications/misc/sequeler/default.nix b/third_party/nixpkgs/pkgs/applications/misc/sequeler/default.nix index fce2688838..49fa61270b 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/sequeler/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/sequeler/default.nix @@ -30,9 +30,7 @@ in stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/misc/slweb/default.nix b/third_party/nixpkgs/pkgs/applications/misc/slweb/default.nix new file mode 100644 index 0000000000..baa1a88e2d --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/misc/slweb/default.nix @@ -0,0 +1,35 @@ +{ lib +, stdenv +, fetchFromSourcehut +, redo-apenwarr +}: + +stdenv.mkDerivation rec { + pname = "slweb"; + version = "0.5"; + + src = fetchFromSourcehut { + owner = "~strahinja"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-GoDumiysqIkWj2HTPQv2gheYsf4fWjtCNPFS/1R0tzc="; + }; + + nativeBuildInputs = [ redo-apenwarr ]; + + installPhase = '' + runHook preInstall + PREFIX=$out redo install + runHook postInstall + ''; + + enableParallelBuilding = true; + + meta = with lib; { + description = "A static website generator which aims at being simplistic"; + homepage = "https://strahinja.srht.site/slweb/"; + license = licenses.gpl3Plus; + platforms = platforms.linux; + maintainers = with maintainers; [ GaetanLepage ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/misc/stork/default.nix b/third_party/nixpkgs/pkgs/applications/misc/stork/default.nix index 196e350422..6b23e2d492 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/stork/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/stork/default.nix @@ -4,7 +4,7 @@ , openssl , pkg-config , stdenv -, darwin +, Security }: rustPlatform.buildRustPackage rec { @@ -23,15 +23,12 @@ rustPlatform.buildRustPackage rec { nativeBuildInputs = [ pkg-config ]; buildInputs = [ openssl ] - ++ lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Security ]; + ++ lib.optionals stdenv.isDarwin [ Security ]; meta = with lib; { description = "Impossibly fast web search, made for static sites"; homepage = "https://github.com/jameslittle230/stork"; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ chuahou ]; - # TODO: Remove once nixpkgs uses macOS SDK 10.14+ for x86_64-darwin - # Undefined symbols for architecture x86_64: "_SecTrustEvaluateWithError" - broken = stdenv.isDarwin && stdenv.isx86_64; }; } diff --git a/third_party/nixpkgs/pkgs/applications/misc/thedesk/default.nix b/third_party/nixpkgs/pkgs/applications/misc/thedesk/default.nix index 132b205f85..730af1a555 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/thedesk/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/thedesk/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "thedesk"; - version = "23.0.1"; + version = "23.0.3"; src = fetchurl { url = "https://github.com/cutls/TheDesk/releases/download/v${version}/${pname}_${version}_amd64.deb"; - sha256 = "sha256-DyaJggucFOxkrpaJSmg5fTrK8O3HA0Byd5pHwcgPSIM="; + sha256 = "sha256-X1WNfpsHRkk2UNTExn338r4pWhtC1osrCo6V8g7Pxcc="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/misc/tippecanoe/default.nix b/third_party/nixpkgs/pkgs/applications/misc/tippecanoe/default.nix index a11e1c5174..bc7e5bd61f 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/tippecanoe/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/tippecanoe/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "tippecanoe"; - version = "2.15.0"; + version = "2.16.0"; src = fetchFromGitHub { owner = "felt"; repo = "tippecanoe"; rev = finalAttrs.version; - hash = "sha256-InKVwB031BLOngcLAa1zRbgoswUb4z5I0FPNMZk9KVI="; + hash = "sha256-C0FCdCgycCh+3iG4D9HMOzx/r+MoYdJUgWL5fs8T1rU="; }; buildInputs = [ sqlite zlib ]; diff --git a/third_party/nixpkgs/pkgs/applications/misc/tootle/default.nix b/third_party/nixpkgs/pkgs/applications/misc/tootle/default.nix index 8483c787ad..b6ab9943d3 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/tootle/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/tootle/default.nix @@ -84,9 +84,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/misc/tut/default.nix b/third_party/nixpkgs/pkgs/applications/misc/tut/default.nix index cc2d9624d6..b02227b8ba 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/tut/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/tut/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "tut"; - version = "1.0.25"; + version = "1.0.26"; src = fetchFromGitHub { owner = "RasmusLindroth"; repo = pname; rev = version; - sha256 = "sha256-wSCT8GaBMBzxtPsspc+kS4mMVayMEBBSzXZB3dQ3Nj8="; + sha256 = "sha256-ZSlrPhCArPEVTKX7BbUfKA+hYi7TpmJbGjWmbBUwes0="; }; - vendorSha256 = "sha256-dyt7JDHsmbdMccIHVaG6N1lAwcM5xKeYoZ2Giwfkgqc="; + vendorSha256 = "sha256-PYVXEPmWgtME3XljJzyGAri/GW19PIkQpscFFRNuVXQ="; meta = with lib; { description = "A TUI for Mastodon with vim inspired keys"; diff --git a/third_party/nixpkgs/pkgs/applications/misc/ulauncher/default.nix b/third_party/nixpkgs/pkgs/applications/misc/ulauncher/default.nix index c4b838beed..c82bdcc600 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/ulauncher/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/ulauncher/default.nix @@ -113,9 +113,7 @@ python3Packages.buildPythonApplication rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; diff --git a/third_party/nixpkgs/pkgs/applications/misc/usql/default.nix b/third_party/nixpkgs/pkgs/applications/misc/usql/default.nix index 1c619c4032..edee8a37fe 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/usql/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/usql/default.nix @@ -11,18 +11,18 @@ buildGoModule rec { pname = "usql"; - version = "0.13.1"; + version = "0.13.4"; src = fetchFromGitHub { owner = "xo"; repo = "usql"; rev = "v${version}"; - hash = "sha256-bdejXGyvY+HAE4sOxhsZYZ5fCISEVxvfOlEjL/CgBLQ="; + hash = "sha256-YshGqp27N1iOBWSE9UH1zsQlFar2uKf4Jq2W8kSN0Qc="; }; buildInputs = [ unixODBC icu ]; - vendorHash = "sha256-+4eRdr5MY9d0ordaDv8hZf4wGoZsp14MpOEp1vhr75w="; + vendorHash = "sha256-qHs5Z7NRdQKPOmYSozhSVQfINMxJewVwQ1Gi4SMWT+8="; proxyVendor = true; # Exclude broken impala & hive driver @@ -42,6 +42,7 @@ buildGoModule rec { "sqlite_fts5" "sqlite_introspect" "sqlite_json1" + "sqlite_math_functions" "sqlite_stat4" "sqlite_userauth" "sqlite_vtable" @@ -59,9 +60,7 @@ buildGoModule rec { doCheck = false; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; tests.version = testers.testVersion { inherit version; package = usql; diff --git a/third_party/nixpkgs/pkgs/applications/misc/with-shell/default.nix b/third_party/nixpkgs/pkgs/applications/misc/with-shell/default.nix index cf52d194f6..3674a23e41 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/with-shell/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/with-shell/default.nix @@ -35,7 +35,7 @@ stdenv.mkDerivation rec { $ with git git> add . - git> commit -a -m "Commited" + git> commit -a -m "Committed" git> push Can also be used for compound commands. diff --git a/third_party/nixpkgs/pkgs/applications/misc/wordbook/default.nix b/third_party/nixpkgs/pkgs/applications/misc/wordbook/default.nix new file mode 100644 index 0000000000..757fed5265 --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/misc/wordbook/default.nix @@ -0,0 +1,69 @@ +{ lib +, fetchFromGitHub +, python3 +, meson +, ninja +, pkg-config +, glib +, gtk4 +, libadwaita +, librsvg +, espeak-ng +, gobject-introspection +, wrapGAppsHook4 +, appstream-glib +, desktop-file-utils +}: + +python3.pkgs.buildPythonApplication rec { + pname = "wordbook"; + version = "unstable-2022-11-02"; + format = "other"; + + src = fetchFromGitHub { + owner = "fushinari"; + repo = "Wordbook"; + rev = "2d79e9e9ef21ba4b54d0b46c764a1481a06f0f1b"; + hash = "sha256-ktusZEQ7m8P0kiH09r3XC6q9bQCWVCn543IMLKmULDo="; + }; + + nativeBuildInputs = [ + meson + ninja + pkg-config + wrapGAppsHook4 + appstream-glib + desktop-file-utils + gobject-introspection + ]; + + buildInputs = [ + glib + gtk4 + librsvg + libadwaita + ]; + + propagatedBuildInputs = with python3.pkgs; [ + pygobject3 + wn + ]; + + # prevent double wrapping + dontWrapGApps = true; + + preFixup = '' + makeWrapperArgs+=( + --prefix PATH ":" "${lib.makeBinPath [ espeak-ng ]}" + "''${gappsWrapperArgs[@]}" + ) + ''; + + meta = with lib; { + description = "Offline English-English dictionary application built for GNOME"; + homepage = "https://github.com/fushinari/Wordbook"; + license = licenses.gpl3Plus; + platforms = platforms.linux; + maintainers = with maintainers; [ zendo ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/misc/xastir/default.nix b/third_party/nixpkgs/pkgs/applications/misc/xastir/default.nix index 1af9f8e249..899468fbb5 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/xastir/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/xastir/default.nix @@ -2,6 +2,7 @@ , curl, db, libgeotiff , xorg, motif, pcre , perl, proj, rastermagick, shapelib +, libax25 }: stdenv.mkDerivation rec { @@ -24,6 +25,7 @@ stdenv.mkDerivation rec { curl db libgeotiff xorg.libXpm xorg.libXt motif pcre perl proj rastermagick shapelib + libax25 ]; configureFlags = [ "--with-motif-includes=${motif}/include" ]; diff --git a/third_party/nixpkgs/pkgs/applications/misc/yambar/default.nix b/third_party/nixpkgs/pkgs/applications/misc/yambar/default.nix index 88b5046d17..f2696c36db 100644 --- a/third_party/nixpkgs/pkgs/applications/misc/yambar/default.nix +++ b/third_party/nixpkgs/pkgs/applications/misc/yambar/default.nix @@ -2,15 +2,19 @@ , stdenv , fetchFromGitea , alsa-lib +, bison , fcft +, flex , json_c , libmpdclient , libxcb , libyaml , meson , ninja +, pipewire , pixman , pkg-config +, pulseaudio , scdoc , tllist , udev @@ -26,26 +30,27 @@ }: let - # Courtesy of sternenseemann and FRidh - mesonFeatureFlag = feature: flag: - "-D${feature}=${if flag then "enabled" else "disabled"}"; + inherit (lib) mesonEnable; in -stdenv.mkDerivation rec { +assert (x11Support || waylandSupport); +stdenv.mkDerivation (finalAttrs: { pname = "yambar"; - version = "1.8.0"; + version = "1.9.0"; src = fetchFromGitea { domain = "codeberg.org"; owner = "dnkl"; repo = "yambar"; - rev = version; - hash = "sha256-zXhIXT3JrVSllnYheDU2KK3NE2VYa+xuKufIXjdMFjU="; + rev = finalAttrs.version; + hash = "sha256-0bgRnZYLGWJ9PE62i04hPBcgzWyd30DK7AUuejSgta4="; }; nativeBuildInputs = [ - pkg-config + bison + flex meson ninja + pkg-config scdoc wayland-scanner ]; @@ -56,7 +61,9 @@ stdenv.mkDerivation rec { json_c libmpdclient libyaml + pipewire pixman + pulseaudio tllist udev ] ++ lib.optionals (waylandSupport) [ @@ -72,13 +79,13 @@ stdenv.mkDerivation rec { mesonBuildType = "release"; mesonFlags = [ - (mesonFeatureFlag "backend-x11" x11Support) - (mesonFeatureFlag "backend-wayland" waylandSupport) + (mesonEnable "backend-x11" x11Support) + (mesonEnable "backend-wayland" waylandSupport) ]; meta = with lib; { homepage = "https://codeberg.org/dnkl/yambar"; - changelog = "https://codeberg.org/dnkl/yambar/releases/tag/${version}"; + changelog = "https://codeberg.org/dnkl/yambar/releases/tag/${finalAttrs.version}"; description = "Modular status panel for X11 and Wayland"; longDescription = '' yambar is a lightweight and configurable status panel (bar, for short) for @@ -107,6 +114,6 @@ stdenv.mkDerivation rec { ''; license = licenses.mit; maintainers = with maintainers; [ AndersonTorres ]; - platforms = with platforms; unix; + platforms = platforms.linux; }; -} +}) diff --git a/third_party/nixpkgs/pkgs/applications/networking/browsers/brave/default.nix b/third_party/nixpkgs/pkgs/applications/networking/browsers/brave/default.nix index 6136b1d7ba..68a35cf768 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/browsers/brave/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/browsers/brave/default.nix @@ -150,7 +150,7 @@ stdenv.mkDerivation rec { --replace /opt/brave.com $out/opt/brave.com # Correct icons location - icon_sizes=("16" "22" "24" "32" "48" "64" "128" "256") + icon_sizes=("16" "24" "32" "48" "64" "128" "256") for icon in ''${icon_sizes[*]} do diff --git a/third_party/nixpkgs/pkgs/applications/networking/browsers/chromium/upstream-info.json b/third_party/nixpkgs/pkgs/applications/networking/browsers/chromium/upstream-info.json index 7521c27d13..c9399336bd 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/browsers/chromium/upstream-info.json +++ b/third_party/nixpkgs/pkgs/applications/networking/browsers/chromium/upstream-info.json @@ -1,8 +1,8 @@ { "stable": { - "version": "108.0.5359.98", - "sha256": "07jnhd5y7k4zp2ipz052isw7llagxn8l8rbz8x3jkjz3f5wi7dk0", - "sha256bin64": "1hx49932g8abnb5f3a4ly7kjbrkh5bs040dh96zpxvfqx7dn6vrs", + "version": "108.0.5359.124", + "sha256": "0x9ac6m4xdccjdrk2bmq4y7bhfpgf2dv0q7lsbbsa50vlv1gm3fl", + "sha256bin64": "00c11svz9dzkg57484jg7c558l0jz8jbgi5zyjs1w7xp24vpnnpg", "deps": { "gn": { "version": "2022-10-05", diff --git a/third_party/nixpkgs/pkgs/applications/networking/browsers/eolie/default.nix b/third_party/nixpkgs/pkgs/applications/networking/browsers/eolie/default.nix index 9a8156e0cf..89f02114f4 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/browsers/eolie/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/browsers/eolie/default.nix @@ -65,9 +65,7 @@ python3.pkgs.buildPythonApplication rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; strictDeps = false; diff --git a/third_party/nixpkgs/pkgs/applications/networking/browsers/ephemeral/default.nix b/third_party/nixpkgs/pkgs/applications/networking/browsers/ephemeral/default.nix index 7ff3b843bc..4002d52715 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/browsers/ephemeral/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/browsers/ephemeral/default.nix @@ -56,9 +56,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix b/third_party/nixpkgs/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix index c275ce7459..96952bebf9 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix @@ -1,985 +1,985 @@ { - version = "108.0b9"; + version = "109.0b6"; sources = [ - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/ach/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/ach/firefox-109.0b6.tar.bz2"; locale = "ach"; arch = "linux-x86_64"; - sha256 = "4857f419269bb21e8470a2717f11b6d3c47591f870e6b42afc81ebd5d642d281"; + sha256 = "76b65d1590e9cda011579e09ad84e0c6a9cab8cb3d5134471aa56a85fe3ae2de"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/af/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/af/firefox-109.0b6.tar.bz2"; locale = "af"; arch = "linux-x86_64"; - sha256 = "da4439d94b52ffd6f77e028bb135b6b3aef2211cec38d71e71a7d45016401830"; + sha256 = "85ae096397e6ea6e798ac5e9a86033f102b5c4bc414fd254cb13929b859db92c"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/an/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/an/firefox-109.0b6.tar.bz2"; locale = "an"; arch = "linux-x86_64"; - sha256 = "7cde9490ea9fe38b6b28c044036d2b2fced37ac6fe0f0eb76ffcff2a20ff5d8c"; + sha256 = "e95f579d3f614a6a377ef46fbc8965cebfd4ea887f27f84f76bc0f1c53b14fc5"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/ar/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/ar/firefox-109.0b6.tar.bz2"; locale = "ar"; arch = "linux-x86_64"; - sha256 = "4994347e131313e153d8cbf60f5856250521543f804a12fcb873522a6b10f920"; + sha256 = "6a9ba4e50bc8b98dbbe3362743639ab60594f4b2d2ac85ffe26156b4826e59c6"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/ast/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/ast/firefox-109.0b6.tar.bz2"; locale = "ast"; arch = "linux-x86_64"; - sha256 = "d580c63861484481ae8e499cd1ab1c07dd9dd7e1e4ddcb6289d2afd08539716e"; + sha256 = "62850d7abf809b64c7248060fceea9c83995db8ebcc5e835b08a530bd0a15a66"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/az/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/az/firefox-109.0b6.tar.bz2"; locale = "az"; arch = "linux-x86_64"; - sha256 = "6a8208dcdca18e4d85ff175e7039f927741378b147ff4cf5571d416bcc407ff6"; + sha256 = "b2a4ac5d321f997767836cddc7bbcf381f2f0bba8cd9638067c3a38a4e9a5bbf"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/be/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/be/firefox-109.0b6.tar.bz2"; locale = "be"; arch = "linux-x86_64"; - sha256 = "3c344641e2d90c3114024ffeac8091f6b38d6ad7d0f62f4d586615b9ab86584d"; + sha256 = "92975b9ada6b8ecf94a4a96a5511f75a2dbaaae55e4b0b8f392790787246d171"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/bg/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/bg/firefox-109.0b6.tar.bz2"; locale = "bg"; arch = "linux-x86_64"; - sha256 = "8c1a89d60b1517b90b8fe3718fe313e8fd161d30fca22a464b4191ea7d80bf57"; + sha256 = "8bd37b2dad222637955fbeead40a28009b53eb160941dde6ef8794d127ae8790"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/bn/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/bn/firefox-109.0b6.tar.bz2"; locale = "bn"; arch = "linux-x86_64"; - sha256 = "c5da6801a7d36bcc1fb686dac732660d239e1a42b6aced421cccfed63b06d4b4"; + sha256 = "4f1c87fdfd74174aa5f1fbccc57449067a2b399fd64d22420fd20991aaed8cfe"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/br/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/br/firefox-109.0b6.tar.bz2"; locale = "br"; arch = "linux-x86_64"; - sha256 = "272cd3aadc769e243e512754423fd4056e9b7073fd963928014776d50f8b5898"; + sha256 = "8e8304e970b082e2db3b2f4ea92a5a6f074d464bf6c9351ac42a6ecb8f086d98"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/bs/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/bs/firefox-109.0b6.tar.bz2"; locale = "bs"; arch = "linux-x86_64"; - sha256 = "9e8d0fb2019541d3edfe46973856fe5023ea8f951ae821450595cab74329d152"; + sha256 = "5ecd605311d64be3a38d533fe8c428168d154946cc1dbc865b7544354adc48c2"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/ca-valencia/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/ca-valencia/firefox-109.0b6.tar.bz2"; locale = "ca-valencia"; arch = "linux-x86_64"; - sha256 = "59edee90be51f371da3a3b2104de89ce95720869338a882113b0057c476e0718"; + sha256 = "53dbe1c04987d19a6a44b7ec69811ebaa83002b360deb0c9f8661c3385a680c8"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/ca/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/ca/firefox-109.0b6.tar.bz2"; locale = "ca"; arch = "linux-x86_64"; - sha256 = "3d7efdbb3aaf418db28a37e2984b7e7c369b37b5db76866580a1adceb64b1d4f"; + sha256 = "d866620aa3453fa5442592b5c4b4d9eab80996bb7d1af2f45743351e45f0b312"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/cak/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/cak/firefox-109.0b6.tar.bz2"; locale = "cak"; arch = "linux-x86_64"; - sha256 = "04382650c53236243dfe7c1ac2973b87410f155021a161d0c3e7103ee66dd9c8"; + sha256 = "fbe47bd70b36e945d5c5f48915db9742778cb1fb84c5b81eda4239eea4f59ebc"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/cs/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/cs/firefox-109.0b6.tar.bz2"; locale = "cs"; arch = "linux-x86_64"; - sha256 = "34ac641943d98f8aa940d7c60e1c70b6b2053a292f10c4c1c2bddff5b26781b4"; + sha256 = "f6e31a67193b59769772e63d784e766b52fef0e68d744c29f60a6d3161b9ed5e"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/cy/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/cy/firefox-109.0b6.tar.bz2"; locale = "cy"; arch = "linux-x86_64"; - sha256 = "80e09013713d0c67b9379425417d51bd280816c8eb8f3f7a2a01467363cbdeea"; + sha256 = "0fea07272469ddfa5c1c2f1c75d029cb2c2d928f9113029f0b8d3b3744843701"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/da/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/da/firefox-109.0b6.tar.bz2"; locale = "da"; arch = "linux-x86_64"; - sha256 = "eaed5f085512fc77998144a337fee900c0785cd9aa30097b42e9a47380a8e23d"; + sha256 = "41f86a0b76a1522c3e18c29970770abf16bb3049b8eb6e027b7cf521853dab1b"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/de/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/de/firefox-109.0b6.tar.bz2"; locale = "de"; arch = "linux-x86_64"; - sha256 = "ee9fe34b5e9f46470d14d8dd2c6e5bd87b874c5c6f6ed717f7b99b01ba57e3ae"; + sha256 = "2f21f743c7f4b57b2450231a10a0e258f28b679ee38ade91283522e27490232d"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/dsb/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/dsb/firefox-109.0b6.tar.bz2"; locale = "dsb"; arch = "linux-x86_64"; - sha256 = "9496d4992721e3a040a0077275035adddd629c73b46eb732be5bbb09cd05820c"; + sha256 = "f10c424a734e435a3258afd26821dde6099f7e05b87dee48a2baa22871e7220a"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/el/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/el/firefox-109.0b6.tar.bz2"; locale = "el"; arch = "linux-x86_64"; - sha256 = "bfa4e90ef1f4ea7c08ae4065345ba0a707327f34822aca94810e8d0ff8d192d2"; + sha256 = "7a9a833026c32fe80198515972911cdf3f5f161e9ab8954743498b0d048bc7f8"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/en-CA/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/en-CA/firefox-109.0b6.tar.bz2"; locale = "en-CA"; arch = "linux-x86_64"; - sha256 = "9230b6f362e2cfe886e3917afd7862df859a67ddd7576b606549f62284ca93af"; + sha256 = "c363a4b5ff6ae8d0c0be0c2415582dd90b906480b4ea793ee214749f00de9748"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/en-GB/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/en-GB/firefox-109.0b6.tar.bz2"; locale = "en-GB"; arch = "linux-x86_64"; - sha256 = "e92629007cde8cb479d05b38cd3de5ef10501691044b025fdabb877bf2163f73"; + sha256 = "22c55da72c49cac9c155518586a077cc2ca7f679f798df028998d2abccd6cb35"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/en-US/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/en-US/firefox-109.0b6.tar.bz2"; locale = "en-US"; arch = "linux-x86_64"; - sha256 = "0ab05d2db8a7eaee019a32995650e9e017632be36d0adcf206a27970d8da7d54"; + sha256 = "3b37d1b033c90825866498445f34ed4e601a67254fea8d9ed21a7da468a960e6"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/eo/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/eo/firefox-109.0b6.tar.bz2"; locale = "eo"; arch = "linux-x86_64"; - sha256 = "c8f45eb5bafdb4f8881ae38f551893b48d1d9ab411ccadc1a432341d08a7edce"; + sha256 = "347875e2af9b93187c837c1af7e89cfe813111fe4a55369b3292572058dece7b"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/es-AR/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/es-AR/firefox-109.0b6.tar.bz2"; locale = "es-AR"; arch = "linux-x86_64"; - sha256 = "837890bb5dc1d78fbf560bf8888604c2db2d49ec2fbf339f7671008b4d1b3bb3"; + sha256 = "0cd77bf06ab4863f5d19b45bb12f9b32b25f36882f5fbcb050b72d6e40c858d9"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/es-CL/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/es-CL/firefox-109.0b6.tar.bz2"; locale = "es-CL"; arch = "linux-x86_64"; - sha256 = "30f5e62b004a1b2ced99475b3aaad8f50560d9facb014526a2841b41b3b46b6a"; + sha256 = "2f1c6b173c44819fe11d17b9dd5ba20c094ec3fb5b6b0b54d5446edc0c00eae6"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/es-ES/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/es-ES/firefox-109.0b6.tar.bz2"; locale = "es-ES"; arch = "linux-x86_64"; - sha256 = "153b8ad0d42e1e077642dceac8c6897adf61f61ffcf4538d92d474433fff6bdd"; + sha256 = "693bb5c0722e54cfda5b2a6fa212bf45e5c0549712641c4d46ffc19f0353818d"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-x86_64/es-MX/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-x86_64/es-MX/firefox-109.0b6.tar.bz2"; 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locale = "ro"; arch = "linux-i686"; - sha256 = "2ab921db0e8a41f4ea65f8d1160cf937aee6258aca9e20ef20154c49c243fa5a"; + sha256 = "33fc4aa14ac6c2607fcc637125bf97110cf44a8c67492206d59b3de42fea01cd"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/ru/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/ru/firefox-109.0b6.tar.bz2"; locale = "ru"; arch = "linux-i686"; - sha256 = "5ee1672da2ff41481ab1a070402a22d35168281f30a9a9f2ef041b957c3bf67c"; + sha256 = "e58103b0efe16766a813cedb56504044b16bd4f94956c8050b53fad466b13c11"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/sco/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/sco/firefox-109.0b6.tar.bz2"; locale = "sco"; arch = "linux-i686"; - sha256 = "c17923814946c5a737cf51a3f40ac54e926b9a9eaef8cd657dcb80a6a179b436"; + sha256 = "01023043ef7e5f72ed744f4790f5a871130e2c5792faa1fa1f3e5366f989c033"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/si/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/si/firefox-109.0b6.tar.bz2"; locale = "si"; arch = "linux-i686"; - sha256 = "caac3bc23c521efa378b300a008aee0c78a143555625cdfb793a09750266c8d8"; + sha256 = "03707f607805927f505f60fb7f2646a012095742eb30b29abdc323f50ba7704d"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/sk/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/sk/firefox-109.0b6.tar.bz2"; locale = "sk"; arch = "linux-i686"; - sha256 = "771ee8ac612725396977f13f58cacd5ae69638a9042e19d79a4f369a7757a1c9"; + sha256 = "ac914e4275e4324695fe10b653ab3b5a5c58fe3af40a8250d113b40deeaa23e7"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/sl/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/sl/firefox-109.0b6.tar.bz2"; locale = "sl"; arch = "linux-i686"; - sha256 = "498a50222ca991045fff323d993ed706abf0ae666822f93363c40136f51454a4"; + sha256 = "3ce0525f23e6a6e6d97e68b1981178188d8770625d056a244a8ebb1f621dd836"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/son/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/son/firefox-109.0b6.tar.bz2"; locale = "son"; arch = "linux-i686"; - sha256 = "198890e77255533ed564856ab5c6a807448423175264533e5897e1a5f9a1bb6e"; + sha256 = "272387d7d55aef3b8f013a6f7e3cc87bf647638dffb84c591e639c8e8682056a"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/sq/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/sq/firefox-109.0b6.tar.bz2"; locale = "sq"; arch = "linux-i686"; - sha256 = "9d06f14aac50f0754c137c242af686678486b4a15561acea114c5527caa90dac"; + sha256 = "71191b96b324f1006e564c964582ef0c044b8ddb8209bda95c5a25d07a29bd97"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/sr/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/sr/firefox-109.0b6.tar.bz2"; locale = "sr"; arch = "linux-i686"; - sha256 = "b384ee29009b683de9a2820c634ec02216e9efc29daa5a0ed00faa6b3d17e259"; + sha256 = "c76729128552b8c040df2315f994992782730c8d9e42330f4e2494864c57a053"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/sv-SE/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/sv-SE/firefox-109.0b6.tar.bz2"; locale = "sv-SE"; arch = "linux-i686"; - sha256 = "5feb44e94b79fd44dfcb07dc4c8dec7944c7b3c1c8111cd27f857d1e2ee49349"; + sha256 = "8c989e5fbc182d70928ce20c09cbb96fdbea9d3e9c54bc718335a25e1a24d7f7"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/szl/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/szl/firefox-109.0b6.tar.bz2"; locale = "szl"; arch = "linux-i686"; - sha256 = "2b9674b7a6e564e33d5e1e49549d1d7997c6b4bf29869f8418154b4c53aab38e"; + sha256 = "155940dda7606994e95484062a20f61da15a73b2bf2dab86a2bc6c141dfed798"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/ta/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/ta/firefox-109.0b6.tar.bz2"; locale = "ta"; arch = "linux-i686"; - sha256 = "8c6d779f4f009de0dd246c85f40c3fada761536afdb8f93e1858cda16a7cbd29"; + sha256 = "ca5d2f0f8c9267341df12df097102fdff2f74c216fa97fc63a9a44b321e42f96"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/te/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/te/firefox-109.0b6.tar.bz2"; locale = "te"; arch = "linux-i686"; - sha256 = "4460e1ef8cdfae255d00d7d0ee5b440ff9ca11e533c96053de143f9db3fbf923"; + sha256 = "e223580ff3427d4eb67b19be8ac3447139fd741f05dcf964d718a3d2afed5539"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/th/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/th/firefox-109.0b6.tar.bz2"; locale = "th"; arch = "linux-i686"; - sha256 = "ec66faf638b3f75840dfbdc3fd4354903776b11757e16abe8127fe62f5e50091"; + sha256 = "26e6fd7e103715499f453b61c83dc0eac4d3cb19aa6c52a881a72f75e97a60df"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/tl/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/tl/firefox-109.0b6.tar.bz2"; locale = "tl"; arch = "linux-i686"; - sha256 = "e6b2db561eb5e8306dcf7efb55fa288d8e53fea92ea6053d452d32e033f9ba3a"; + sha256 = "96a401a95f3d4b69ebedb1b6cc3a49f77c7c40f4c7d7558319f65ae715e50e8c"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/tr/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/tr/firefox-109.0b6.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha256 = "adae4dfc2f88e9c466b77b02e6ce25f4312a5ffafe3ceefc4b463468bc2c5e90"; + sha256 = "0d71a867ffbb5d398cbe8845f8c1cfdae5a6a2d2376f516b833f576dd018d3ab"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/trs/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/trs/firefox-109.0b6.tar.bz2"; locale = "trs"; arch = "linux-i686"; - sha256 = "293cf639806063f11ded14807a8533bab9b3e8c5af9dfdfd2805c6517cf72554"; + sha256 = "5033544bcc9eb29613f46429792f186a6ee678618f3c08b77cabee90bce0bbcd"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/uk/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/uk/firefox-109.0b6.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha256 = "01c80c2c187f57b1877e483ad1e10cb0fbcfba27e87673945a0af042c249157e"; + sha256 = "b21c551502c21a048751bdbbaa77700dfb572a5a43f45476eadc138357855bd8"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/ur/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/ur/firefox-109.0b6.tar.bz2"; locale = "ur"; arch = "linux-i686"; - sha256 = "f3f7623ed6aaaac4ed49d8245a2ceb1542be73d3b31a977fbaf87bc74b48e053"; + sha256 = "e970d58372693c64399c8114ecdbfe5abbeae62ce1adb5d2372050f6e991ccd0"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/uz/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/uz/firefox-109.0b6.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha256 = "486595f8dc269f1fb80fe421fa5d29774d4045b3b080b392ae0267c0503b53f8"; + sha256 = "2b789b1b5cabe05313838cc19540c2722b018dafac6912fe923d980bb5fd06a8"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/vi/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/vi/firefox-109.0b6.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha256 = "5fc34ad937c733b7dc00f809ad83a1b3a5cccfd0d77edb885703751ca510a3d0"; + sha256 = "574728df151fbd88a2588c2958ca877041ce88b9144492e4d1e237f6b964e8c7"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/xh/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/xh/firefox-109.0b6.tar.bz2"; locale = "xh"; arch = "linux-i686"; - sha256 = "2706ee7d95ecf2f5b99da42fb3b47fce1aa6a0afa408e70a7382034c14499a2b"; + sha256 = "6ca7acaf782fd34feaa3c27a87b38dcd5c59e3dda3ca1a97b9815b0b41f393db"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/zh-CN/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/zh-CN/firefox-109.0b6.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha256 = "0175228eef8d3b12071bc6ed3b5c965cb36da8a30395ba288bd19bc60135a3e4"; + sha256 = "10322f94dc986f9f06256387d862718b3c3145ce019deef0ba6020aea1679fe2"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/108.0b9/linux-i686/zh-TW/firefox-108.0b9.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/109.0b6/linux-i686/zh-TW/firefox-109.0b6.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha256 = "4ed84db9ba1fa41148a39244c7feaf6ad93d52d97a8c5885df835456ec66c184"; + sha256 = "409c4d71e3a2750fc34bac6c3e596b237e076d26975a6f38e6aa5dce0e70f9e4"; } ]; } diff --git a/third_party/nixpkgs/pkgs/applications/networking/browsers/firefox/packages.nix b/third_party/nixpkgs/pkgs/applications/networking/browsers/firefox/packages.nix index aae1cecc1a..37717252cd 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/browsers/firefox/packages.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/browsers/firefox/packages.nix @@ -3,10 +3,10 @@ rec { firefox = buildMozillaMach rec { pname = "firefox"; - version = "108.0"; + version = "108.0.1"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${version}/source/firefox-${version}.source.tar.xz"; - sha512 = "fa800f62cca395a51b9a04373a27be48fc3860208e34ecf74d908127638d1eb8c41cf9898be6896777d408127d5c4b7104d9ee89c97da923b2dc6ea32186187e"; + sha512 = "e6219ed6324422ec293ed96868738e056582bb9f7fb82e59362541f3465c6ebca806d26ecd801156b074c3675bd5a22507b1f1fa53eebf82b7dd35f2b1ff0625"; }; meta = { diff --git a/third_party/nixpkgs/pkgs/applications/networking/browsers/lagrange/default.nix b/third_party/nixpkgs/pkgs/applications/networking/browsers/lagrange/default.nix index 9899033297..a46ea32ceb 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/browsers/lagrange/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/browsers/lagrange/default.nix @@ -50,9 +50,7 @@ stdenv.mkDerivation (finalAttrs: { ''; passthru = { - updateScript = nix-update-script { - attrPath = finalAttrs.pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/networking/browsers/vivaldi/default.nix b/third_party/nixpkgs/pkgs/applications/networking/browsers/vivaldi/default.nix index 435b5c4fe5..df0a3323d7 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/browsers/vivaldi/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/browsers/vivaldi/default.nix @@ -11,7 +11,6 @@ , isSnapshot ? false , proprietaryCodecs ? false, vivaldi-ffmpeg-codecs ? null , enableWidevine ? false, vivaldi-widevine ? null -, forceDarkMode ? false , commandLineArgs ? "" , pulseSupport ? stdenv.isLinux, libpulseaudio }: @@ -80,7 +79,7 @@ in stdenv.mkDerivation rec { substituteInPlace "$out"/share/applications/*.desktop \ --replace /usr/bin/${vivaldiName} "$out"/bin/vivaldi substituteInPlace "$out"/share/applications/*.desktop \ - --replace vivaldi-stable "vivaldi ${lib.optionalString forceDarkMode "--force-dark-mode"}" + --replace vivaldi-stable vivaldi local d for d in 16 22 24 32 48 64 128 256; do mkdir -p "$out"/share/icons/hicolor/''${d}x''${d}/apps diff --git a/third_party/nixpkgs/pkgs/applications/networking/cloudflared/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cloudflared/default.nix index 3930a2d487..e2cc376af2 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cloudflared/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cloudflared/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "cloudflared"; - version = "2022.11.1"; + version = "2022.12.1"; src = fetchFromGitHub { owner = "cloudflare"; repo = "cloudflared"; rev = version; - hash = "sha256-aG63CEJfEL9r0SviZu9VzArtt3e4VuAbOMaYk9atSGo="; + hash = "sha256-FXN/UUlzG3+AYYZeKJ6XUG4rD3cPWIx22h3zZpvZhiM="; }; vendorSha256 = null; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/argo-rollouts/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/argo-rollouts/default.nix index 731fe0553f..3c309d8e7c 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/argo-rollouts/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/argo-rollouts/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "argo-rollouts"; - version = "1.3.1"; + version = "1.3.2"; src = fetchFromGitHub { owner = "argoproj"; repo = "argo-rollouts"; rev = "v${version}"; - sha256 = "sha256-qgOhiJdaxauHIoPsMfcdxwrKiv8QD/tFksCbk13Zpiw="; + sha256 = "sha256-hsUpZrtgjP6FaVhw0ijDTlvfz9Ok+A4nyAwi2VNxvEg="; }; vendorSha256 = "sha256-gm96rQdQJGsIcxVgEI7sI7BvEETU/+HsQ6PnDjFXb/0="; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/argocd/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/argocd/default.nix index 3fce464f44..e090843780 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/argocd/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/argocd/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "argocd"; - version = "2.5.4"; + version = "2.5.5"; src = fetchFromGitHub { owner = "argoproj"; repo = "argo-cd"; rev = "v${version}"; - sha256 = "sha256-Wwm9YN/gPsb4AU+JFUDrJQbuK5AEqzX5/D64/6tOtkw="; + sha256 = "sha256-u9VOkUaKQAdlXhCUUONBws4rW6PvxFSNXbit7gi6/P0="; }; proxyVendor = true; # darwin/linux hash mismatch diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/arkade/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/arkade/default.nix index 3b45321c6f..fe59539efb 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/arkade/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/arkade/default.nix @@ -7,20 +7,20 @@ buildGoModule rec { pname = "arkade"; - version = "0.8.50"; + version = "0.8.52"; src = fetchFromGitHub { owner = "alexellis"; repo = "arkade"; rev = version; - sha256 = "sha256-DPBQ+MisNgVh2DpaIF//fjIzGvfpNYRS4zpYeUVqLwg="; + sha256 = "sha256-fKLvWlGJmhTvjcihJOytPvSNqhWOtJhWxMgw9gpc2M0="; }; CGO_ENABLED = 0; nativeBuildInputs = [ installShellFiles ]; - vendorSha256 = "sha256-Kr6m1qhVTiXllm5xaxXKsWAtWbnsDwbwWH0iqc0sKfM="; + vendorSha256 = "sha256-E2b0iJtOcRBOW4PEI/1ECM4fJa+s/LHtmRK/iYvJ358="; # Exclude pkg/get: tests downloading of binaries which fail when sandbox=true subPackages = [ diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/calico/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/calico/default.nix new file mode 100644 index 0000000000..192899ff1b --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/calico/default.nix @@ -0,0 +1,81 @@ +{ lib, buildGoModule, fetchFromGitHub }: + +builtins.mapAttrs (pname: { doCheck ? true, mainProgram ? pname, subPackages }: buildGoModule rec { + inherit pname; + version = "3.24.5"; + + src = fetchFromGitHub { + owner = "projectcalico"; + repo = "calico"; + rev = "v${version}"; + hash = "sha256-fB9FHiIqVieVkPfHmBvcaUmUqkT1ZbDT26+DUE9lbdc="; + }; + + vendorHash = "sha256-ogQ/REf5cngoGAFIBN++txew6UqOw1hqCVsixyuGtug="; + + inherit doCheck subPackages; + + ldflags = [ "-s" "-w" ]; + + meta = with lib; { + homepage = "https://projectcalico.docs.tigera.io"; + changelog = "https://github.com/projectcalico/calico/releases/tag/v${version}"; + description = "Cloud native networking and network security"; + license = licenses.asl20; + maintainers = with maintainers; [ urandom ]; + inherit mainProgram; + }; +}) { + calico-apiserver = { + mainProgram = "apiserver"; + subPackages = [ + "apiserver/cmd/..." + ]; + }; + calico-app-policy = { + # integration tests require network + doCheck = false; + mainProgram = "dikastes"; + subPackages = [ + "app-policy/cmd/..." + ]; + }; + calico-cni-plugin = { + mainProgram = "calico"; + subPackages = [ + "cni-plugin/cmd/..." + ]; + }; + calico-kube-controllers = { + # integration tests require network and docker + doCheck = false; + mainProgram = "kube-controllers"; + subPackages = [ + "kube-controllers/cmd/..." + ]; + }; + calico-pod2daemon = { + mainProgram = "flexvol"; + subPackages = [ + "pod2daemon/csidriver" + "pod2daemon/flexvol" + "pod2daemon/nodeagent" + ]; + }; + calico-typha = { + subPackages = [ + "typha/cmd/..." + ]; + }; + calicoctl = { + subPackages = [ + "calicoctl/calicoctl" + ]; + }; + confd-calico = { + mainProgram = "confd"; + subPackages = [ + "confd" + ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/cmctl/update.sh b/third_party/nixpkgs/pkgs/applications/networking/cluster/cmctl/update.sh index 70b088a688..16a20edb57 100755 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/cmctl/update.sh +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/cmctl/update.sh @@ -7,13 +7,13 @@ NIXPKGS_PATH="$(git rev-parse --show-toplevel)" CMCTL_PATH="$( cd -- "$(dirname "$0")" >/dev/null 2>&1 ; pwd -P )" OLD_VERSION="$(nix-instantiate --eval -E "with import $NIXPKGS_PATH {}; cmctl.version or (builtins.parseDrvName cmctl.name).version" | tr -d '"')" -LATEST_TAG="$(curl -s ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} "https://api.github.com/repos/cert-manager/cert-manager/releases" | jq '.[].tag_name' --raw-output | sed '/-/d' | sort --version-sort -r | head -n 1)" +LATEST_TAG="$(curl -s ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} "https://api.github.com/repos/cert-manager/cert-manager/releases" | jq '.[].tag_name' --raw-output | sed '/-/d' | sort --version-sort -r | head -n 1)" LATEST_VERSION="${LATEST_TAG:1}" if [ ! "$OLD_VERSION" = "$LATEST_VERSION" ]; then SHA256=$(nix-prefetch-url --quiet --unpack https://github.com/cert-manager/cert-manager/archive/refs/tags/${LATEST_TAG}.tar.gz) - TAG_SHA=$(curl -s ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} "https://api.github.com/repos/cert-manager/cert-manager/git/ref/tags/${LATEST_TAG}" | jq -r '.object.sha') - TAG_COMMIT_SHA=$(curl -s ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} "https://api.github.com/repos/cert-manager/cert-manager/git/tags/${TAG_SHA}" | jq '.object.sha' --raw-output) + TAG_SHA=$(curl -s ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} "https://api.github.com/repos/cert-manager/cert-manager/git/ref/tags/${LATEST_TAG}" | jq -r '.object.sha') + TAG_COMMIT_SHA=$(curl -s ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} "https://api.github.com/repos/cert-manager/cert-manager/git/tags/${TAG_SHA}" | jq '.object.sha' --raw-output) setKV () { sed -i "s|$1 = \".*\"|$1 = \"${2:-}\"|" "${CMCTL_PATH}/default.nix" diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/crc/update.sh b/third_party/nixpkgs/pkgs/applications/networking/cluster/crc/update.sh index 9d3fcba7d9..3ac34c168b 100755 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/crc/update.sh +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/crc/update.sh @@ -13,7 +13,7 @@ NIXPKGS_CRC_FOLDER=$( cd ${NIXPKGS_CRC_FOLDER} LATEST_TAG_RAWFILE=${WORKDIR}/latest_tag.json -curl --silent ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} \ +curl --silent ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} \ https://api.github.com/repos/code-ready/crc/releases >${LATEST_TAG_RAWFILE} LATEST_TAG_NAME=$(jq 'map(.tag_name)' ${LATEST_TAG_RAWFILE} | @@ -21,7 +21,7 @@ LATEST_TAG_NAME=$(jq 'map(.tag_name)' ${LATEST_TAG_RAWFILE} | CRC_VERSION=$(echo ${LATEST_TAG_NAME} | sed 's/^v//') -CRC_COMMIT=$(curl --silent ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} \ +CRC_COMMIT=$(curl --silent ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} \ https://api.github.com/repos/code-ready/crc/tags | jq -r "map(select(.name == \"${LATEST_TAG_NAME}\")) | .[0] | .commit.sha") diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/fluxcd/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/fluxcd/default.nix index c9d3f778b5..0b5f01654c 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/fluxcd/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/fluxcd/default.nix @@ -1,9 +1,9 @@ { lib, buildGoModule, fetchFromGitHub, fetchzip, installShellFiles, stdenv }: let - version = "0.37.0"; - sha256 = "10f0k6k02n981vf0bjh70qf4kdax2qc40ld278p7mrsqri38r1q9"; - manifestsSha256 = "0srg7184sb1brxj8kzzf0ilmx5ym96h78v919xcmbdd6v4f2ycy9"; + version = "0.38.2"; + sha256 = "1fr3jg9j0hrnr55wh40d0lli593pid1vqnbgnw9wxqsv6677dh53"; + manifestsSha256 = "1dmp7gdnwbg4jjc3dq1wp2jn3z3g6lm296b1nf24ndcfmjja58cz"; manifests = fetchzip { url = @@ -23,7 +23,7 @@ in buildGoModule rec { inherit sha256; }; - vendorSha256 = "sha256-zB7Fo+Lw0+hWuzkYLDb9I+swhm9kGfjYNkU96hF6QTg="; + vendorSha256 = "sha256-aPkuP6FVIkMAJi+wwNfgvxXi+PE1mMUXfxz44/R31KI="; postUnpack = '' cp -r ${manifests} source/cmd/flux/manifests diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/glooctl/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/glooctl/default.nix index 0728a03e97..de9f2e78f9 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/glooctl/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/glooctl/default.nix @@ -2,17 +2,17 @@ buildGoModule rec { pname = "glooctl"; - version = "1.12.33"; + version = "1.12.37"; src = fetchFromGitHub { owner = "solo-io"; repo = "gloo"; rev = "v${version}"; - hash = "sha256-T/fkQxRcwDYppGpAu1sBg8Oe8dAa4Bk/jt4jYMikPBE="; + hash = "sha256-3dm60ySi/IdiAzZ+LWMLwxUJRv2HX0tQR5s+XMFqyGg="; }; subPackages = [ "projects/gloo/cli/cmd" ]; - vendorSha256 = "sha256-G26BfTdXMQP0U4FDRYkJNfUOGfqow714WPNBnBrXLZQ="; + vendorSha256 = "sha256-b4Nl6uuZmcbxht4IRupyzQJL/o8nj4fIUuHvlHZWYTU="; nativeBuildInputs = [ installShellFiles ]; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/hadoop/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/hadoop/default.nix index ebe21a2da4..58ba8a4168 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/hadoop/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/hadoop/default.nix @@ -133,7 +133,7 @@ in }; jdk = jdk8_headless; # not using native libs because of broken openssl_1_0_2 dependency - # can be manually overriden + # can be manually overridden tests = nixosTests.hadoop_3_2; }; hadoop2 = common rec { diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/k0sctl/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/k0sctl/default.nix index 5f19d55b5b..9868326588 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/k0sctl/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/k0sctl/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "k0sctl"; - version = "0.14.0"; + version = "0.15.0"; src = fetchFromGitHub { owner = "k0sproject"; repo = pname; rev = "v${version}"; - sha256 = "sha256-m0BdmsqmkB3Q6JzzRPS6Tq68a33heUifY2EgTjbAm3M="; + sha256 = "sha256-i/XgEPuYNxn10eOXfF+X33oLlkO9r6daeygZcSdcicQ="; }; - vendorSha256 = "sha256-CZ8DmgYXQcpd43qm6YsVHFePuUochHgJG7/ffEK8LL8="; + vendorSha256 = "sha256-RTC2AEDzSafvJT/vuPjzs25PhuzBiPb32an/a/wpY04="; ldflags = [ "-s" diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/k3s/update.sh b/third_party/nixpkgs/pkgs/applications/networking/cluster/k3s/update.sh index ac46e7ae51..913be71d0d 100755 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/k3s/update.sh +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/k3s/update.sh @@ -11,7 +11,7 @@ NIXPKGS_K3S_PATH=$(cd $(dirname ${BASH_SOURCE[0]}); pwd -P)/ cd ${NIXPKGS_K3S_PATH} LATEST_TAG_RAWFILE=${WORKDIR}/latest_tag.json -curl --silent ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} \ +curl --silent ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} \ https://api.github.com/repos/k3s-io/k3s/releases > ${LATEST_TAG_RAWFILE} LATEST_TAG_NAME=$(jq 'map(.tag_name)' ${LATEST_TAG_RAWFILE} | \ @@ -19,7 +19,7 @@ LATEST_TAG_NAME=$(jq 'map(.tag_name)' ${LATEST_TAG_RAWFILE} | \ K3S_VERSION=$(echo ${LATEST_TAG_NAME} | sed 's/^v//') -K3S_COMMIT=$(curl --silent ${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} \ +K3S_COMMIT=$(curl --silent ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} \ https://api.github.com/repos/k3s-io/k3s/tags \ | jq -r "map(select(.name == \"${LATEST_TAG_NAME}\")) | .[0] | .commit.sha") diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/k3sup/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/k3sup/default.nix index ec7cdb3ecd..555f1e69c1 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/k3sup/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/k3sup/default.nix @@ -9,13 +9,13 @@ buildGoModule rec { pname = "k3sup"; - version = "0.12.10"; + version = "0.12.12"; src = fetchFromGitHub { owner = "alexellis"; repo = "k3sup"; rev = version; - sha256 = "sha256-d9YZOrMZKwkHmo7/b0BE552OLnD/ETfF4n+jE7fQ4zA="; + sha256 = "sha256-Fp52PL0oNqpvisiLLqZ+iQ4RSzLaL3UH7S/CAR5h9LA="; }; nativeBuildInputs = [ makeWrapper installShellFiles ]; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/kubebuilder/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/kubebuilder/default.nix index dd6e71a58a..df1e6ab788 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/kubebuilder/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/kubebuilder/default.nix @@ -12,16 +12,16 @@ buildGoModule rec { pname = "kubebuilder"; - version = "3.7.0"; + version = "3.8.0"; src = fetchFromGitHub { owner = "kubernetes-sigs"; repo = "kubebuilder"; rev = "v${version}"; - sha256 = "sha256-nLjmz9OakBLTBWdYA6czgtJmCuP96abNwLcLZo+yZ48="; + hash = "sha256-UTzQyr5N8CButeLKYZs9a8hAV/cezVfLLQ7b4YJQzXU="; }; - vendorSha256 = "sha256-xljLDwubwr6rZ/ZpW9/WithClaMo88ivlBhWFb0iAvo="; + vendorHash = "sha256-VvCM0aBk0SnnXVPZRvEGcb1Bl4Uunbc4u1KzukYMGqA="; subPackages = ["cmd"]; @@ -61,6 +61,7 @@ buildGoModule rec { meta = with lib; { description = "SDK for building Kubernetes APIs using CRDs"; homepage = "https://github.com/kubernetes-sigs/kubebuilder"; + changelog = "https://github.com/kubernetes-sigs/kubebuilder/releases/tag/v${version}"; license = licenses.asl20; maintainers = with maintainers; [ cmars ]; }; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/kubecfg/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/kubecfg/default.nix index 899519e741..7fd5175e1e 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/kubecfg/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/kubecfg/default.nix @@ -1,19 +1,27 @@ -{ lib, buildGoModule, fetchFromGitHub, installShellFiles }: +{ lib +, buildGoModule +, fetchFromGitHub +, installShellFiles +}: buildGoModule rec { pname = "kubecfg"; - version = "0.28.0"; + version = "0.28.1"; src = fetchFromGitHub { owner = "kubecfg"; repo = "kubecfg"; rev = "v${version}"; - sha256 = "sha256-Ask1Mbt/7xhfTNPmLIFtndT6qqbyotFrhoaUggzgGas="; + hash = "sha256-5IaF7q9Ue+tHkThxYgpkrnEH7xpKBx6cqKf2Zw2mjN4="; }; - vendorSha256 = "sha256-vqlANAwZTC4goeN/KsrYL9GWzkhi4WUx9Llyi863KVY="; + vendorHash = "sha256-Fh8QlXZ7I3XORjRhf5DIQmqA35LmgWVTN+iZDGaYHD8="; - ldflags = [ "-s" "-w" "-X main.version=v${version}" ]; + ldflags = [ + "-s" + "-w" + "-X main.version=v${version}" + ]; nativeBuildInputs = [ installShellFiles ]; @@ -23,11 +31,12 @@ buildGoModule rec { --zsh <($out/bin/kubecfg completion --shell=zsh) ''; - meta = { + meta = with lib; { description = "A tool for managing Kubernetes resources as code"; homepage = "https://github.com/kubecfg/kubecfg"; - license = lib.licenses.asl20; - maintainers = with lib.maintainers; [ benley ]; - platforms = lib.platforms.unix; + changelog = "https://github.com/kubecfg/kubecfg/releases/tag/v${version}"; + license = licenses.asl20; + maintainers = with maintainers; [ benley ]; + platforms = platforms.unix; }; } diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/kubergrunt/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/kubergrunt/default.nix index f40c7e8c87..94441c960c 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/kubergrunt/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/kubergrunt/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kubergrunt"; - version = "0.9.3"; + version = "0.10.0"; src = fetchFromGitHub { owner = "gruntwork-io"; repo = "kubergrunt"; rev = "v${version}"; - sha256 = "sha256-nbpRdAkctLiG/hP6vhfEimplAzzj70d5nnaFcJ1NykY="; + sha256 = "sha256-HJZrE0fHlyOTQF9EqdrtQNmaHlrMA2RwNg4P7B2lYI0="; }; vendorSha256 = "sha256-9hWX6INN5HWXyeFQRjkqr+BsGv56lInVYacvT6Imahw="; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/kubernetes/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/kubernetes/default.nix index 787f9f0c98..5e89ce36d3 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/kubernetes/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/kubernetes/default.nix @@ -20,13 +20,13 @@ buildGoModule rec { pname = "kubernetes"; - version = "1.25.5"; + version = "1.26.0"; src = fetchFromGitHub { owner = "kubernetes"; repo = "kubernetes"; rev = "v${version}"; - sha256 = "sha256-HciTzp9N7YY1+jzIJY8OPmYIsGfe/5abaExnDzt1tKE="; + sha256 = "sha256-tdt5F6KCsIPurkwG9acOHvm1tV2ERBNYtcvheJR+wLA="; }; vendorSha256 = null; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/kubeseal/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/kubeseal/default.nix index 6bcde313e9..da452e9769 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/kubeseal/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/kubeseal/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kubeseal"; - version = "0.19.2"; + version = "0.19.3"; src = fetchFromGitHub { owner = "bitnami-labs"; repo = "sealed-secrets"; rev = "v${version}"; - sha256 = "sha256-LluWV/GWBJ+dmn94GtqPNCIDTZk2zlNhrbcM2pALUpU="; + sha256 = "sha256-KssClU/jWdBH29TFhCeui6mN6t6IJlIKM3LzaWdPG7Q="; }; - vendorSha256 = "sha256-f7rznlRKEkHsU72QvRpOtvhg5rp9PuEoADhQOeD16rU="; + vendorSha256 = "sha256-58+MJMn687wh9c25qtwGQdy4uGcZN3T2bWK/cvxlLvQ="; subPackages = [ "cmd/kubeseal" ]; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/kyverno/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/kyverno/default.nix index f0bc32f9be..53da8b9be2 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/kyverno/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/kyverno/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kyverno"; - version = "1.8.4"; + version = "1.8.5"; src = fetchFromGitHub { owner = "kyverno"; repo = "kyverno"; rev = "v${version}"; - sha256 = "sha256-VAKT1gw8wkfde/rQVvRzq4HH0mKcLczR5EHtxy3zULg="; + sha256 = "sha256-oEy1SNlYHDuZG2urbXEfROwzfNzdbu0Yjsq98Dw+Mws="; }; ldflags = [ diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/linkerd/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/linkerd/default.nix index 83d75d7d18..896c2ac5a0 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/linkerd/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/linkerd/default.nix @@ -2,7 +2,7 @@ (callPackage ./generic.nix { }) { channel = "stable"; - version = "2.12.0"; - sha256 = "0p8k5c0gzpmqp7qrhfcjrhbgwd2mzsn2qpsv7ym0ywjkvrkg3355"; - vendorSha256 = "sha256-qjXpzS1ctEQfXFjzyBUiIp6+oqABedpwHqDxQz0DJ8U="; + version = "2.12.3"; + sha256 = "01vnqhn5lc4pv1rgwmmzzf7ynqc4ss0jysqhjq0m5yzll2k40d8z"; + vendorSha256 = "sha256-7CkeWbgiQIKhuCrJErZrkkx0MD41qxaWAY/18VafLZE="; } diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/default.nix index 35a5a9591c..5635d6ab27 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/default.nix @@ -90,6 +90,7 @@ let ps.nixops-hetzner ps.nixopsvbox ps.nixops-virtd + ps.nixops-hetznercloud ]) // rec { # Workaround for https://github.com/NixOS/nixpkgs/issues/119407 # TODO after #1199407: Use .overrideAttrs(pkg: old: { passthru.tests = .....; }) diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/poetry-git-overlay.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/poetry-git-overlay.nix index 7166c3ac28..8c47fde8bb 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/poetry-git-overlay.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/poetry-git-overlay.nix @@ -71,6 +71,16 @@ self: super: { } ); + nixops-hetznercloud = super.nixops-hetznercloud.overridePythonAttrs ( + _: { + src = pkgs.fetchgit { + url = "https://github.com/lukebfox/nixops-hetznercloud.git"; + rev = "386f8b7cfe724308a9c1e97e76d238498a279495"; + sha256 = "0ig9maxcprxvz0fgriyzgcqz990s1pspizzsqj7x3xg0w0dpx853"; + }; + } + ); + nixops-virtd = super.nixops-virtd.overridePythonAttrs ( _: { src = pkgs.fetchgit { diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/poetry.lock b/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/poetry.lock index 56405bc146..134dec79fe 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/poetry.lock +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/poetry.lock @@ -1,10 +1,16 @@ +# This file is automatically @generated by Poetry and should not be changed by hand. + [[package]] name = "apache-libcloud" -version = "3.6.0" +version = "3.6.1" description = "A standard Python library that abstracts away differences among multiple cloud provider APIs. For more information and documentation, please see https://libcloud.apache.org" category = "main" optional = false python-versions = ">=3.6, <4" +files = [ + {file = "apache-libcloud-3.6.1.tar.gz", hash = "sha256:0facf3206568430c998da40e9bbac6d3a0c4fc80dd51674d9e794b381450120c"}, + {file = "apache_libcloud-3.6.1-py2.py3-none-any.whl", hash = "sha256:d01eee601b6367e711788c47a275ee717f23854f5267d9ba3b3e8ed3bb400e56"}, +] [package.dependencies] requests = ">=2.26.0" @@ -16,17 +22,25 @@ description = "Amazon Web Services Library" category = "main" optional = false python-versions = "*" +files = [ + {file = "boto-2.49.0-py2.py3-none-any.whl", hash = "sha256:147758d41ae7240dc989f0039f27da8ca0d53734be0eb869ef16e3adcfa462e8"}, + {file = "boto-2.49.0.tar.gz", hash = "sha256:ea0d3b40a2d852767be77ca343b58a9e3a4b00d9db440efb8da74b4e58025e5a"}, +] [[package]] name = "boto3" -version = "1.24.88" +version = "1.26.32" description = "The AWS SDK for Python" category = "main" optional = false python-versions = ">= 3.7" +files = [ + {file = "boto3-1.26.32-py3-none-any.whl", hash = "sha256:672b97a634f3408d455bf94a6dfd59ef0c6150019885bc7107e465f062d58c26"}, + {file = "boto3-1.26.32.tar.gz", hash = "sha256:e0d6215313b03f09a9a38eccc88c1d3ba9868bcaaeb8b20eeb6d88fc3018b94d"}, +] [package.dependencies] -botocore = ">=1.27.88,<1.28.0" +botocore = ">=1.29.32,<1.30.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.6.0,<0.7.0" @@ -35,11 +49,15 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.27.88" +version = "1.29.32" description = "Low-level, data-driven core of boto 3." category = "main" optional = false python-versions = ">= 3.7" +files = [ + {file = "botocore-1.29.32-py3-none-any.whl", hash = "sha256:b1a65edca151665a6844bf9f317440e31d8d5e4cbce3477f2661462e20c213b1"}, + {file = "botocore-1.29.32.tar.gz", hash = "sha256:27bc3903f7f8c813efd1605ff13ffdfca2c37dc78cadfa488cfda78fca323deb"}, +] [package.dependencies] jmespath = ">=0.7.1,<2.0.0" @@ -47,15 +65,19 @@ python-dateutil = ">=2.1,<3.0.0" urllib3 = ">=1.25.4,<1.27" [package.extras] -crt = ["awscrt (==0.14.0)"] +crt = ["awscrt (==0.15.3)"] [[package]] name = "certifi" -version = "2022.9.24" +version = "2022.12.7" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false python-versions = ">=3.6" +files = [ + {file = "certifi-2022.12.7-py3-none-any.whl", hash = "sha256:4ad3232f5e926d6718ec31cfc1fcadfde020920e278684144551c91769c7bc18"}, + {file = "certifi-2022.12.7.tar.gz", hash = "sha256:35824b4c3a97115964b408844d64aa14db1cc518f6562e8d7261699d1350a9e3"}, +] [[package]] name = "cffi" @@ -64,431 +86,7 @@ description = "Foreign Function Interface for Python calling C code." category = "main" optional = false python-versions = "*" - -[package.dependencies] -pycparser = "*" - -[[package]] -name = "charset-normalizer" -version = "2.1.1" -description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -category = "main" -optional = false -python-versions = ">=3.6.0" - -[package.extras] -unicode_backport = ["unicodedata2"] - -[[package]] -name = "cryptography" -version = "3.4.8" -description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." -category = "main" -optional = false -python-versions = ">=3.6" - -[package.dependencies] -cffi = ">=1.12" - -[package.extras] -docs = ["sphinx (>=1.6.5,!=1.8.0,!=3.1.0,!=3.1.1)", "sphinx_rtd_theme"] -docstest = ["doc8", "pyenchant (>=1.6.11)", "sphinxcontrib-spelling (>=4.0.1)", "twine (>=1.12.0)"] -pep8test = ["black", "flake8", "flake8-import-order", "pep8-naming"] -sdist = ["setuptools-rust (>=0.11.4)"] -ssh = ["bcrypt (>=3.1.5)"] -test = ["hypothesis (>=1.11.4,!=3.79.2)", "iso8601", "pretend", "pytest (>=6.0)", "pytest-cov", "pytest-subtests", "pytest-xdist", "pytz"] - -[[package]] -name = "hetzner" -version = "0.8.3" -description = "High level access to the Hetzner robot" -category = "main" -optional = false -python-versions = "*" - -[[package]] -name = "idna" -version = "3.4" -description = "Internationalized Domain Names in Applications (IDNA)" -category = "main" -optional = false -python-versions = ">=3.5" - -[[package]] -name = "jmespath" -version = "1.0.1" -description = "JSON Matching Expressions" -category = "main" -optional = false -python-versions = ">=3.7" - -[[package]] -name = "jsonpickle" -version = "2.2.0" -description = "Python library for serializing any arbitrary object graph into JSON" -category = "main" -optional = false -python-versions = ">=2.7" - -[package.extras] -docs = ["jaraco.packaging (>=3.2)", "rst.linker (>=1.9)", "sphinx"] -testing = ["ecdsa", "enum34", "feedparser", "jsonlib", "numpy", "pandas", "pymongo", "pytest (>=3.5,!=3.7.3)", "pytest-black-multipy", "pytest-checkdocs (>=1.2.3)", "pytest-cov", "pytest-flake8 (<1.1.0)", "pytest-flake8 (>=1.1.1)", "scikit-learn", "sqlalchemy"] -"testing.libs" = ["simplejson", "ujson", "yajl"] - -[[package]] -name = "libvirt-python" -version = "8.8.0" -description = "The libvirt virtualization API python binding" -category = "main" -optional = false -python-versions = "*" - -[[package]] -name = "nixops" -version = "2.0.0" -description = "NixOS cloud provisioning and deployment tool" -category = "main" -optional = false -python-versions = "^3.10" -develop = false - -[package.dependencies] -pluggy = "^1.0.0" -PrettyTable = "^0.7.2" -typeguard = "^2.7.1" -typing-extensions = "^3.7.4" - -[package.source] -type = "git" -url = "https://github.com/NixOS/nixops.git" -reference = "master" -resolved_reference = "683baa66c613216a662aad3fd58b0cdc5cd41adb" - -[[package]] -name = "nixops-aws" -version = "1.0" -description = "NixOps AWS plugin" -category = "main" -optional = false -python-versions = "^3.7" -develop = false - -[package.dependencies] -boto = "^2.49.0" -boto3 = "^1.13.7" -nixops = {git = "https://github.com/NixOS/nixops.git", rev = "master"} -nixos-modules-contrib = {git = "https://github.com/nix-community/nixos-modules-contrib.git", rev = "master"} -typing-extensions = "^3.7.4" - -[package.source] -type = "git" -url = "https://github.com/NixOS/nixops-aws.git" -reference = "HEAD" -resolved_reference = "d8a6679c413edd1a7075b2fe08017b4c7fa3b3ce" - -[[package]] -name = "nixops-digitalocean" -version = "2.0" -description = "NixOps plugin for Digital Ocean" -category = "main" -optional = false -python-versions = "^3.7" -develop = false - -[package.dependencies] -nixops = {git = "https://github.com/NixOS/nixops.git"} -python-digitalocean = "^1.15.0" - -[package.source] -type = "git" -url = "https://github.com/nix-community/nixops-digitalocean.git" -reference = "HEAD" -resolved_reference = "e977b7f11e264a6a2bff2dcbc7b94c6a97b92fff" - -[[package]] -name = "nixops-encrypted-links" -version = "1.0" -description = "Encrypted links support for NixOps" -category = "main" -optional = false -python-versions = "^3.7" -develop = false - -[package.dependencies] -nixops = {git = "https://github.com/NixOS/nixops.git"} - -[package.source] -type = "git" -url = "https://github.com/nix-community/nixops-encrypted-links.git" -reference = "HEAD" -resolved_reference = "e2f196fce15fcfb00d18c055e1ac53aec33b8fb1" - -[[package]] -name = "nixops-gcp" -version = "1.0" -description = "NixOps backend for Google Cloud Platform" -category = "main" -optional = false -python-versions = "^3.7" -develop = false - -[package.dependencies] -apache-libcloud = "^3.2.0" -cryptography = "^3.1.1" -nixops = {git = "https://github.com/NixOS/nixops.git", rev = "master"} -nixos-modules-contrib = {git = "https://github.com/nix-community/nixos-modules-contrib.git", rev = "master"} - -[package.source] -type = "git" -url = "https://github.com/nix-community/nixops-gce.git" -reference = "HEAD" -resolved_reference = "712453027486e62e087b9c91e4a8a171eebb6ddd" - -[[package]] -name = "nixops-hercules-ci" -version = "0.1.0" -description = "" -category = "main" -optional = false -python-versions = "^3.8" -develop = false - -[package.dependencies] -nixops = {git = "https://github.com/NixOS/nixops.git"} - -[package.source] -type = "git" -url = "https://github.com/hercules-ci/nixops-hercules-ci.git" -reference = "HEAD" -resolved_reference = "e601d5baffd003fd5f22deeaea0cb96444b054dc" - -[[package]] -name = "nixops-hetzner" -version = "1.0" -description = "NixOS deployment tool, but for hetzner" -category = "main" -optional = false -python-versions = "^3.7" -develop = false - -[package.dependencies] -hetzner = "0.8.3" -nixops = {git = "https://github.com/NixOS/nixops.git", rev = "master"} -nixos-modules-contrib = {git = "https://github.com/nix-community/nixos-modules-contrib.git", rev = "master"} -typing-extensions = "^3.7.4" - -[package.source] -type = "git" -url = "https://github.com/NixOS/nixops-hetzner" -reference = "HEAD" -resolved_reference = "bc7a68070c7371468bcc8bf6e36baebc6bd2da35" - -[[package]] -name = "nixops-virtd" -version = "1.0" -description = "NixOps plugin for virtd" -category = "main" -optional = false -python-versions = "^3.7" -develop = false - -[package.dependencies] -libvirt-python = "^8.0" -nixops = {git = "https://github.com/NixOS/nixops.git"} - -[package.source] -type = "git" -url = "https://github.com/nix-community/nixops-libvirtd.git" -reference = "HEAD" -resolved_reference = "bc3cf1c5c774a80e05991ca040baa2b23e3ecd51" - -[[package]] -name = "nixopsvbox" -version = "1.7" -description = "NixOps backend for VirtualBox" -category = "main" -optional = false -python-versions = "^3.7" -develop = false - -[package.dependencies] -nixops = {git = "https://github.com/NixOS/nixops.git", rev = "master"} - -[package.source] -type = "git" -url = "https://github.com/nix-community/nixops-vbox.git" -reference = "HEAD" -resolved_reference = "2729672865ebe2aa973c062a3fbddda8c1359da0" - -[[package]] -name = "nixos-modules-contrib" -version = "0.1.0" -description = "NixOS modules that don't quite belong in NixOS." -category = "main" -optional = false -python-versions = "^3.7" -develop = false - -[package.dependencies] -nixops = {git = "https://github.com/NixOS/nixops.git", rev = "master"} - -[package.source] -type = "git" -url = "https://github.com/nix-community/nixos-modules-contrib.git" -reference = "master" -resolved_reference = "81a1c2ef424dcf596a97b2e46a58ca73a1dd1ff8" - -[[package]] -name = "pluggy" -version = "1.0.0" -description = "plugin and hook calling mechanisms for python" -category = "main" -optional = false -python-versions = ">=3.6" - -[package.extras] -dev = ["pre-commit", "tox"] -testing = ["pytest", "pytest-benchmark"] - 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-[package.dependencies] -certifi = ">=2017.4.17" -charset-normalizer = ">=2,<3" -idna = ">=2.5,<4" -urllib3 = ">=1.21.1,<1.27" - -[package.extras] -socks = ["PySocks (>=1.5.6,!=1.5.7)"] -use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"] - -[[package]] -name = "s3transfer" -version = "0.6.0" -description = "An Amazon S3 Transfer Manager" -category = "main" -optional = false -python-versions = ">= 3.7" - -[package.dependencies] -botocore = ">=1.12.36,<2.0a.0" - -[package.extras] -crt = ["botocore[crt] (>=1.20.29,<2.0a.0)"] - -[[package]] -name = "six" -version = "1.16.0" -description = "Python 2 and 3 compatibility utilities" -category = "main" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" - -[[package]] -name = "typeguard" -version = "2.13.3" -description = "Run-time type checker for Python" -category = "main" -optional = false -python-versions = ">=3.5.3" - -[package.extras] -doc = ["sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] -test = ["mypy", "pytest", "typing-extensions"] - 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+[package.dependencies] +six = ">=1.5" + +[[package]] +name = "python-digitalocean" +version = "1.17.0" +description = "digitalocean.com API to manage Droplets and Images" +category = "main" +optional = false +python-versions = "*" +files = [ {file = "python-digitalocean-1.17.0.tar.gz", hash = "sha256:107854fde1aafa21774e8053cf253b04173613c94531f75d5a039ad770562b24"}, {file = "python_digitalocean-1.17.0-py3-none-any.whl", hash = "sha256:0032168e022e85fca314eb3f8dfaabf82087f2ed40839eb28f1eeeeca5afb1fa"}, ] -requests = [ + +[package.dependencies] +jsonpickle = "*" +requests = "*" + +[[package]] +name = "requests" +version = "2.28.1" +description = "Python HTTP for Humans." +category = "main" +optional = false +python-versions = ">=3.7, <4" +files = [ {file = "requests-2.28.1-py3-none-any.whl", hash = "sha256:8fefa2a1a1365bf5520aac41836fbee479da67864514bdb821f31ce07ce65349"}, {file = "requests-2.28.1.tar.gz", hash = "sha256:7c5599b102feddaa661c826c56ab4fee28bfd17f5abca1ebbe3e7f19d7c97983"}, ] -s3transfer = [ + +[package.dependencies] +certifi = ">=2017.4.17" +charset-normalizer = ">=2,<3" +idna = ">=2.5,<4" +urllib3 = ">=1.21.1,<1.27" + +[package.extras] +socks = ["PySocks (>=1.5.6,!=1.5.7)"] +use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] + +[[package]] +name = "s3transfer" +version = "0.6.0" +description = "An Amazon S3 Transfer Manager" +category = "main" +optional = false +python-versions = ">= 3.7" +files = [ {file = "s3transfer-0.6.0-py3-none-any.whl", hash = "sha256:06176b74f3a15f61f1b4f25a1fc29a4429040b7647133a463da8fa5bd28d5ecd"}, {file = "s3transfer-0.6.0.tar.gz", hash = "sha256:2ed07d3866f523cc561bf4a00fc5535827981b117dd7876f036b0c1aca42c947"}, ] -six = [ + +[package.dependencies] +botocore = ">=1.12.36,<2.0a.0" + +[package.extras] +crt = ["botocore[crt] (>=1.20.29,<2.0a.0)"] + +[[package]] +name = "six" +version = "1.16.0" +description = "Python 2 and 3 compatibility utilities" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" +files = [ {file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"}, {file = "six-1.16.0.tar.gz", hash = "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926"}, ] -typeguard = [ + +[[package]] +name = "typeguard" +version = "2.13.3" +description = "Run-time type checker for Python" +category = "main" +optional = false +python-versions = ">=3.5.3" +files = [ {file = "typeguard-2.13.3-py3-none-any.whl", hash = "sha256:5e3e3be01e887e7eafae5af63d1f36c849aaa94e3a0112097312aabfa16284f1"}, {file = "typeguard-2.13.3.tar.gz", hash = "sha256:00edaa8da3a133674796cf5ea87d9f4b4c367d77476e185e80251cc13dfbb8c4"}, ] -typing-extensions = [ + +[package.extras] +doc = ["sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] +test = ["mypy", "pytest", "typing-extensions"] + +[[package]] +name = "typing-extensions" +version = "3.10.0.2" +description = "Backported and Experimental Type Hints for Python 3.5+" +category = "main" +optional = false +python-versions = "*" +files = [ {file = "typing_extensions-3.10.0.2-py2-none-any.whl", hash = "sha256:d8226d10bc02a29bcc81df19a26e56a9647f8b0a6d4a83924139f4a8b01f17b7"}, {file = "typing_extensions-3.10.0.2-py3-none-any.whl", hash = "sha256:f1d25edafde516b146ecd0613dabcc61409817af4766fbbcfb8d1ad4ec441a34"}, {file = "typing_extensions-3.10.0.2.tar.gz", hash = "sha256:49f75d16ff11f1cd258e1b988ccff82a3ca5570217d7ad8c5f48205dd99a677e"}, ] -urllib3 = [ - {file = "urllib3-1.26.12-py2.py3-none-any.whl", hash = "sha256:b930dd878d5a8afb066a637fbb35144fe7901e3b209d1cd4f524bd0e9deee997"}, - {file = "urllib3-1.26.12.tar.gz", hash = "sha256:3fa96cf423e6987997fc326ae8df396db2a8b7c667747d47ddd8ecba91f4a74e"}, + +[[package]] +name = "urllib3" +version = "1.26.13" +description = "HTTP library with thread-safe connection pooling, file post, and more." +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +files = [ + {file = "urllib3-1.26.13-py2.py3-none-any.whl", hash = "sha256:47cc05d99aaa09c9e72ed5809b60e7ba354e64b59c9c173ac3018642d8bb41fc"}, + {file = "urllib3-1.26.13.tar.gz", hash = "sha256:c083dd0dce68dbfbe1129d5271cb90f9447dea7d52097c6e0126120c521ddea8"}, ] + +[package.extras] +brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)", "brotlipy (>=0.6.0)"] +secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"] +socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] + +[metadata] +lock-version = "2.0" +python-versions = "^3.10" +content-hash = "e58721318221aacb55ace3d0df65d71382f20147367dfa1466b59a13bda564b4" diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/pyproject.toml b/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/pyproject.toml index 2f1132a51b..31afcfb408 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/pyproject.toml +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/nixops/pyproject.toml @@ -13,6 +13,7 @@ nixops-encrypted-links = {git = "https://github.com/nix-community/nixops-encrypt nixops-gcp = {git = "https://github.com/nix-community/nixops-gce.git"} nixops-hercules-ci = {git = "https://github.com/hercules-ci/nixops-hercules-ci.git"} nixops-hetzner = {git = "https://github.com/NixOS/nixops-hetzner"} +nixops-hetznercloud = {git = "https://github.com/lukebfox/nixops-hetznercloud.git"} nixopsvbox = {git = "https://github.com/nix-community/nixops-vbox.git"} nixops-virtd = {git = "https://github.com/nix-community/nixops-libvirtd.git"} diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/ocm/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/ocm/default.nix index 46fdeef2ac..4c4ececb71 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/ocm/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/ocm/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "ocm"; - version = "0.1.64"; + version = "0.1.65"; src = fetchFromGitHub { owner = "openshift-online"; repo = "ocm-cli"; rev = "v${version}"; - sha256 = "sha256-RMXiEXgf8tAdp2d97kaOzXgFCFVkaMhkJF8AHXIEJm8="; + sha256 = "sha256-UzHGVK/HZ5eH8nO4+G92NunOQi9AWnqv4vgcHjtoPDw="; }; - vendorSha256 = "sha256-4m5Ej2Ql9+wGqrzvXQkY8fL2I9tYE6Tm6s9+qcZBHQI="; + vendorSha256 = "sha256-4pqXap1WayqdXuwwLktE71D7x6Ao9MkIKSzIKtVyP84="; # Strip the final binary. ldflags = [ "-s" "-w" ]; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/odo/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/odo/default.nix index ac5342bb29..ba982fd83b 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/odo/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/odo/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "odo"; - version = "3.3.0"; + version = "3.4.0"; src = fetchFromGitHub { owner = "redhat-developer"; repo = "odo"; rev = "v${version}"; - sha256 = "sha256-Np2O3mO9wBxDcCHG8/zMdIU2N+3RNRT2SN3kh7+l2Nc="; + sha256 = "sha256-UXeSerVtskEloH60vNom8H6/gEy7adUnBsc/5q7wrDM="; }; vendorSha256 = null; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/pachyderm/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/pachyderm/default.nix index eb68de91c2..a7544e50b3 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/pachyderm/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/pachyderm/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "pachyderm"; - version = "2.4.1"; + version = "2.4.2"; src = fetchFromGitHub { owner = "pachyderm"; repo = "pachyderm"; rev = "v${version}"; - hash = "sha256-hU1Li3ZTgCbvyfBQ7TcmmeXOfcb1DHeo/K7iT7vc+vE="; + hash = "sha256-IzZBs6g6MQKofhMIdLr7ty7HzwF+SoyzCJ6RDMHt0mo="; }; vendorHash = "sha256-j7zg0vIhdYbzyi4owdVEF4XyUNwGds6J01+3k5K90Yg="; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/sonobuoy/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/sonobuoy/default.nix index ae7753d758..b558a7ff0b 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/sonobuoy/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/sonobuoy/default.nix @@ -1,11 +1,11 @@ { lib, buildGoModule, fetchFromGitHub }: # SHA of ${version} for the tool's help output. Unfortunately this is needed in build flags. -let rev = "5b97033257d0276c7b0d1b20412667a69d79261e"; +let rev = "bd5465d6b2b2b92b517f4c6074008d22338ff509"; in buildGoModule rec { pname = "sonobuoy"; - version = "0.56.13"; # Do not forget to update `rev` above + version = "0.56.14"; # Do not forget to update `rev` above ldflags = let t = "github.com/vmware-tanzu/sonobuoy"; @@ -20,10 +20,10 @@ buildGoModule rec { owner = "vmware-tanzu"; repo = "sonobuoy"; rev = "v${version}"; - sha256 = "sha256-T0G0S8bj0QO1/eC/XMwiJ0ZcJC6KYB6gmj/bq2yYgAE="; + sha256 = "sha256-YiVCdAdwdK9PcQ6VQQNAjLQq2X54vJmZfbHRjV2d8VQ="; }; - vendorSha256 = "sha256-SRR4TmNHbMOOMv6AXv/Qpn2KUQh+ZsFlzc5DpdyPLEU="; + vendorSha256 = "sha256-Fqxkyl9AKZ7H4QSp2V/yztpeXHt57+LjpzzGtOPndX0="; subPackages = [ "." ]; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/talosctl/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/talosctl/default.nix index 93f6f97a6a..f7f74497fb 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/talosctl/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/talosctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "talosctl"; - version = "1.2.7"; + version = "1.3.0"; src = fetchFromGitHub { owner = "siderolabs"; repo = "talos"; rev = "v${version}"; - sha256 = "sha256-AQTBiHlaVFV1fvZ278DYf2XnktnLNa1Hb4qS2D2r/fM="; + sha256 = "sha256-2/myjkALv5gz/mbT/unRBC2Hi0jWPBzcoDKhOOHq/bw="; }; - vendorSha256 = "sha256-GKDhqIfYmPwbxt+hId3Axr64xOTXkLklZzNYWDo9SG8="; + vendorSha256 = "sha256-NAGq4HX4A3Sq8QlWSD/UBBVwY6EgT/1MC5s8uTJX2Po="; ldflags = [ "-s" "-w" ]; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/terraform-providers/providers.json b/third_party/nixpkgs/pkgs/applications/networking/cluster/terraform-providers/providers.json index ac52b952c2..69dab424dd 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/terraform-providers/providers.json +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/terraform-providers/providers.json @@ -11,14 +11,14 @@ "vendorHash": "sha256-AB+uj4hQIYMVQHhw1cISB2TotNO8rw1iU0/gP096CoE=" }, "acme": { - "hash": "sha256-H+1/Au/jCxNxrV+kk6tylUF85taZcs44uWed1QH1aRo=", + "hash": "sha256-fK34A45plTqtOYGbq8CAtFnyMYOvdOKFycY7X5ZlRRY=", "homepage": "https://registry.terraform.io/providers/vancluever/acme", "owner": "vancluever", "proxyVendor": true, "repo": "terraform-provider-acme", - "rev": "v2.11.1", + "rev": "v2.12.0", "spdx": "MPL-2.0", - "vendorHash": "sha256-QGZKoxiSiT78gk2vc8uE6k1LAi/S1o5W9TZN7T/1XfA=" + "vendorHash": "sha256-L8d2Y4gSmqqmg24lULWrdKSI+194rRTVZyxJAEL+gqM=" }, "age": { "hash": "sha256-bJrzjvkrCX93bNqCA+FdRibHnAw6cb61StqtwUY5ok4=", @@ -30,29 +30,29 @@ "vendorHash": "sha256-jK7JuARpoxq7hvq5+vTtUwcYot0YqlOZdtDwq4IqKvk=" }, "aiven": { - "hash": "sha256-PeIb/HErJ3iIBwzeUmdhNXCYZBqayI2cRSDrye8A3Ys=", + "hash": "sha256-6HZHDqdYeIthzqMwTEpYTyjh624tifhoAFOXIh8xqMg=", "homepage": "https://registry.terraform.io/providers/aiven/aiven", "owner": "aiven", "repo": "terraform-provider-aiven", - "rev": "v3.9.0", + "rev": "v3.10.0", "spdx": "MIT", "vendorHash": "sha256-J/x5oc4Qr4c/K5RKswFeWgUDE+ns1bUxfpRlj29uCY0=" }, "akamai": { - "hash": "sha256-SKaSKBV47B9Y0w2zmNOek/UEbUQLtB1qAm6866RAhdA=", + "hash": "sha256-vna0TVanrfhbELwpD3ZidwkBfB20dM+11Gq6qdZ0MmA=", "homepage": "https://registry.terraform.io/providers/akamai/akamai", "owner": "akamai", "repo": "terraform-provider-akamai", - "rev": "v3.1.0", + "rev": "v3.2.1", "spdx": "MPL-2.0", - "vendorHash": "sha256-byReViTX0KRFVgWMkte00CDB/3Mw8Ov5GyD48sENmIA=" + "vendorHash": "sha256-pz+h8vbdCEgNSH9AoPlIP7zprViAMawXk64SV0wnVPo=" }, "alicloud": { - "hash": "sha256-VGrMkgX7WmIz7v0+D1OPYerslVueGw5XRBtWebLrkQk=", + "hash": "sha256-m5IZ6JiEbyAuNo2LiuuP05yApvoHypjFnGioWJ/4ETQ=", "homepage": "https://registry.terraform.io/providers/aliyun/alicloud", "owner": "aliyun", "repo": "terraform-provider-alicloud", - "rev": "v1.194.0", + "rev": "v1.194.1", "spdx": "MPL-2.0", "vendorHash": null }, @@ -84,13 +84,13 @@ "vendorHash": "sha256-U88K2CZcN7xh1rPmkZpbRWgj3+lPKN7hkB9T60jR1JQ=" }, "auth0": { - "hash": "sha256-l41GOH5J0ZF+Vp/Vabhm30ZLG6/XJrI7QeCdl2WvNso=", + "hash": "sha256-87T0ta5xU61COOfIZ1CP3TTWdCyd6RKLJ2hqShq+giM=", "homepage": "https://registry.terraform.io/providers/auth0/auth0", "owner": "auth0", "repo": "terraform-provider-auth0", - "rev": "v0.40.0", + "rev": "v0.41.0", "spdx": "MPL-2.0", - "vendorHash": "sha256-0BE+NZe4DgAU0lNuwsHiGogMJKhM2fy9CriMtKzmJcI=" + "vendorHash": "sha256-OhtomdRIjKxELnSQGbZvrHAE1ag4VAyuSOMrZvZ5q0s=" }, "avi": { "hash": "sha256-0FcdVd7EGVHZ0iRonoGfjwYgXpJtUhqX5i925Ejhv54=", @@ -112,13 +112,13 @@ "vendorHash": null }, "aws": { - "hash": "sha256-5eqUaO8XRPh2wkltGu7D3GToNAq1zSpQ1LS/h0W/CQA=", + "hash": "sha256-EN8b2mkGys9td4XmTJ4N/Hi1T3EhLo0nv6Mludu3Mso=", "homepage": "https://registry.terraform.io/providers/hashicorp/aws", "owner": "hashicorp", "repo": "terraform-provider-aws", - "rev": "v4.46.0", + "rev": "v4.48.0", "spdx": "MPL-2.0", - "vendorHash": "sha256-xo9Z50jK8dWxQ8DeGLjB8ppnGuUmGlQLhzRHpKs8hYg=" + "vendorHash": "sha256-BplPkGuyoljbGZnX7uDuEJsWZFWAXKe/asma9/wCGRM=" }, "azuread": { "hash": "sha256-itaFeOEnoTIJfACvJZCIe9RWNVgewdVFZzXUK7yGglQ=", @@ -130,11 +130,11 @@ "vendorHash": null }, "azurerm": { - "hash": "sha256-GNp4Am/ooMm//LGMMxJlMxQIh4rHmQdnpVEYZn3Hjb8=", + "hash": "sha256-xrP3znKMbS4jwtKxIobo8IIeiDp+clFboPrJY6aVYlA=", "homepage": "https://registry.terraform.io/providers/hashicorp/azurerm", "owner": "hashicorp", "repo": "terraform-provider-azurerm", - "rev": "v3.35.0", + "rev": "v3.37.0", "spdx": "MPL-2.0", "vendorHash": null }, @@ -149,40 +149,40 @@ }, "baiducloud": { "deleteVendor": true, - "hash": "sha256-Yw0dtfPiXLSLDvlAL3OUfZsd8ihc/OCBedsSSUcedOU=", + "hash": "sha256-4v9FuM69U+4V2Iy85vc4RP9KgzeME/R8rXxNSMBABdM=", "homepage": "https://registry.terraform.io/providers/baidubce/baiducloud", "owner": "baidubce", "repo": "terraform-provider-baiducloud", - 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"rev": "v1.32.0", + "rev": "v1.32.1", "spdx": "MPL-2.0", - "vendorHash": "sha256-TCeAqQLdeCS3NPDAppinRv4qBPBWtG/qAUKc+4acqEE=" + "vendorHash": "sha256-gVkbVF2eG8k9vy4BuuoY+s5Uw1QMJ0Q2BHtHDMRpDvY=" }, "opsgenie": { "hash": "sha256-6lbJyBppfRqqmYpPgyzUTvnvHPSWjE3SJULqliZ2iUI=", @@ -879,20 +879,20 @@ "vendorHash": null }, "ovh": { - "hash": "sha256-G1YRp6ScdlPnV8cCC05TKToJk+iLx2l28x7Lv4GS2/k=", + "hash": "sha256-vYOL9FeYzUWt09rg2GkLDnOCNp6GPXOFv8OhXtUvRUY=", "homepage": "https://registry.terraform.io/providers/ovh/ovh", "owner": "ovh", "repo": "terraform-provider-ovh", - "rev": "v0.24.0", + "rev": "v0.25.0", "spdx": "MPL-2.0", "vendorHash": null }, "pagerduty": { - "hash": "sha256-2qOFrNwBFp30gLR9pFEaByx1vD8TZUayISaKZ7fytZo=", + "hash": "sha256-RKIKE+kOe1obxzloFzhPZpEk1kVL8Un+fV3of9/AAxQ=", "homepage": "https://registry.terraform.io/providers/PagerDuty/pagerduty", "owner": "PagerDuty", "repo": "terraform-provider-pagerduty", - "rev": "v2.7.0", + "rev": "v2.8.1", "spdx": "MPL-2.0", "vendorHash": null }, @@ -996,13 +996,13 @@ "vendorHash": "sha256-0UOC70RWcEb/YqPrrc7k+dY7jBuTZLWvUTNxuUZIyu4=" }, "sentry": { - "hash": "sha256-D6w2HfgIcNFfDXeqzuerK8msrFF7vajk80MUxbUxA+A=", + "hash": "sha256-hzSNgRaAZIClElIdmbhO36jYuDN6YELkHzGyFOrNw3w=", "homepage": "https://registry.terraform.io/providers/jianyuan/sentry", "owner": "jianyuan", "repo": "terraform-provider-sentry", - "rev": "v0.10.0", + "rev": "v0.11.0", "spdx": "MIT", - "vendorHash": "sha256-OxapqNRE5Poz6qsFjDv5G5zzivbBldzjC7kbwG2Cswg=" + "vendorHash": "sha256-//0Ijxgm4+b5TZHgBkLb8l6v1DEgEUJSgwcdVt8ys8o=" }, "shell": { "hash": "sha256-LTWEdXxi13sC09jh+EFZ6pOi1mzuvgBz5vceIkNE/JY=", @@ -1032,13 +1032,13 @@ "vendorHash": null }, "snowflake": { - "hash": "sha256-folCDzwXDfWGVxqX+wMBtRqUXdecYL0Rj7XYzb5QBvA=", + "hash": "sha256-2VE4/M50KKNH+ZqZM7C4Ed1H17zauQrJVxF54q1ER2o=", "homepage": "https://registry.terraform.io/providers/Snowflake-Labs/snowflake", "owner": "Snowflake-Labs", "repo": "terraform-provider-snowflake", - "rev": "v0.53.0", + "rev": "v0.54.0", "spdx": "MIT", - "vendorHash": "sha256-5sqPDUNg1uH3LAMnvQ4YAm5LDdcywQHp1DVKYLFZG7Q=" + "vendorHash": "sha256-bYHvuzj3ShX55cgrYobqADxcRDgese+n24p14z82CLA=" }, "sops": { "hash": "sha256-6FuThi6iuuUGcMhswAk3Z6Lxth/2nuI57A02Xu2s+/U=", @@ -1050,13 +1050,13 @@ "vendorHash": "sha256-NO1r/EWLgH1Gogru+qPeZ4sW7FuDENxzNnpLSKstnE8=" }, "spotinst": { - "hash": "sha256-yzFbSTSxvnTu3v6A3DRTh5Le79dHaYFcqBu2xZ9pSXM=", + "hash": "sha256-OxpXh9wCsIjDSA6kDH9Gapkx0cWH8vFJoCxZu5FRPC8=", "homepage": "https://registry.terraform.io/providers/spotinst/spotinst", "owner": "spotinst", "repo": "terraform-provider-spotinst", - "rev": "v1.87.1", + "rev": "v1.90.0", "spdx": "MPL-2.0", - "vendorHash": "sha256-dMqXpKHnIjJEq84Bxoio+jxQMwQ2Yt41/grU6LRSo/A=" + "vendorHash": "sha256-L5nNi2DdchkjuWFOF7mOIiW3GzhDk6P66RQwyw0PhSM=" }, "stackpath": { "hash": "sha256-nTR9HgSmuNCt7wxE4qqIH2+HA2igzqVx0lLRx6FoKrE=", @@ -1068,20 +1068,20 @@ "vendorHash": "sha256-Fvku4OB1sdWuvMx/FIHfOJt9STgao0xPDao6b2SYxcQ=" }, "statuscake": { - "hash": "sha256-rT+NJBPA73WCctlZnu0i952fzrGCxVF2vIIvE0SzvNI=", + "hash": "sha256-PcA0t/G11w9ud+56NdiRXi82ubJ+wpL4XcexT1O2ADw=", "homepage": "https://registry.terraform.io/providers/StatusCakeDev/statuscake", "owner": "StatusCakeDev", "repo": "terraform-provider-statuscake", - "rev": "v2.0.5", + "rev": "v2.0.6", "spdx": "MPL-2.0", - "vendorHash": "sha256-wPNMrHFCUn1AScxTwgRXHSGrs+6Ebm4c+cS5EwHUeUU=" + "vendorHash": "sha256-0D36uboEHqw968MKqkgARib9R04JH5FlXAfPL8OEpgU=" }, "sumologic": { - "hash": "sha256-lhMPA4ub3NlaYs0pX6FkWuR3LQxytrQxu9DjAjDja2Q=", + "hash": "sha256-4M8h1blefSNNTgt7aL7ecruguEWcZUrzsXGZX3AC2Hc=", "homepage": "https://registry.terraform.io/providers/SumoLogic/sumologic", "owner": "SumoLogic", "repo": "terraform-provider-sumologic", - "rev": "v2.19.2", + "rev": "v2.20.0", "spdx": "MPL-2.0", "vendorHash": "sha256-W+dV6rmyOqCeQboYvpxYoNZixv2+uBd2+sc9BvTE+Ag=" }, @@ -1187,13 +1187,13 @@ "vendorHash": "sha256-EOBNoEW9GI21IgXSiEN93B3skxfCrBkNwLxGXaso1oE=" }, "vcd": { - "hash": "sha256-/Xb9SzOT300SkJU6Lrk6weastVQiGn6FslziXe85hQ0=", + "hash": "sha256-Gpib9vgd8t//WJj7tuVEUYGf4HitqE/Kz8RyhMglKsw=", "homepage": "https://registry.terraform.io/providers/vmware/vcd", "owner": "vmware", "repo": "terraform-provider-vcd", - "rev": "v3.8.0", + "rev": "v3.8.1", "spdx": "MPL-2.0", - "vendorHash": "sha256-UHSrQsu59Lr0s1YQ4rv7KT5e20Tz/qhGGl1sv7Dl1Dc=" + "vendorHash": "sha256-UT34mv0QN0Nq2+bRmAqFhslSzNe9iESUKEYLmjq9DRM=" }, "venafi": { "hash": "sha256-/5X/+BilaYwi1Vce7mIvVeHjTpVX/OuYquZ+2BGfxrs=", @@ -1250,12 +1250,12 @@ "vendorHash": "sha256-ib1Esx2AO7b9S+v+zzuATgSVHI3HVwbzEeyqhpBz1BQ=" }, "yandex": { - "hash": "sha256-PX6bqNdfIc7gZDYw3yVpxNgJnHuzr6Cu80puMTQqv4U=", + "hash": "sha256-g3BdCQKBuxrTn/sScJtRMyL2EoiOF5MpMXMM6I++dEg=", "homepage": "https://registry.terraform.io/providers/yandex-cloud/yandex", "owner": "yandex-cloud", "proxyVendor": true, "repo": "terraform-provider-yandex", - "rev": "v0.83.0", + "rev": "v0.84.0", "spdx": "MPL-2.0", "vendorHash": "sha256-q9Rs2yJtI7MVqBcd9wwtyqR9PzmVkhKatbRRZwFm3po=" } diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/terragrunt/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/terragrunt/default.nix index be2529f087..60e12f1198 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/terragrunt/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/terragrunt/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "terragrunt"; - version = "0.42.4"; + version = "0.42.5"; src = fetchFromGitHub { owner = "gruntwork-io"; repo = pname; rev = "v${version}"; - sha256 = "sha256-PaCI39Z2WaHZ6IYRxFNZvG9c40pWzNbwoHrJFXLOqMk="; + sha256 = "sha256-hF40Tb9NND8az9zOOvh9w/VyjbpVlKqnMT7J9oDJjBM="; }; vendorSha256 = "sha256-ByFn2j2m5dON0No6mt1QiYm4vMRSymS5Tezaws9B9c4="; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/waypoint/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/waypoint/default.nix index 36718608d4..e6f6bc1511 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/waypoint/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/waypoint/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "waypoint"; - version = "0.10.4"; + version = "0.10.5"; src = fetchFromGitHub { owner = "hashicorp"; repo = pname; rev = "v${version}"; - sha256 = "sha256-jbrzXktY1vGk1DuzrzxlWwFQoFPprnDy2YjZQBgmcPI="; + sha256 = "sha256-oUzWBFoBRwQynWubBzR9xNIyqRXTsH0R+OCyIDz0a9s="; }; - vendorSha256 = "sha256-oTzGgyQZWNj7vNpAaDO47nB7EbpUiQD66u4F1LJ2CR0="; + vendorSha256 = "sha256-rmDxO1tfpCUh5TXsSmf3DMIqB0NQHuCyizZmnaoZox0="; nativeBuildInputs = [ go-bindata installShellFiles ]; diff --git a/third_party/nixpkgs/pkgs/applications/networking/cluster/werf/default.nix b/third_party/nixpkgs/pkgs/applications/networking/cluster/werf/default.nix index f1137e231c..b1a7727207 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/cluster/werf/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/cluster/werf/default.nix @@ -10,13 +10,13 @@ buildGoModule rec { pname = "werf"; - version = "1.2.191"; + version = "1.2.193"; src = fetchFromGitHub { owner = "werf"; repo = "werf"; rev = "v${version}"; - hash = "sha256-MNIHY3bswPGd8hhR0/9ZxifSv+/kWvLmNESqYRVPao8="; + hash = "sha256-4q+LtPwJa3gioOY90gUfCL4F/8jmtfkBKxBShg2xQas="; }; vendorHash = "sha256-GjcmpHyjhjCWE5gQR/oTHfhHYg5WRu8uhgAuWhdxlYk="; diff --git a/third_party/nixpkgs/pkgs/applications/networking/flexget/default.nix b/third_party/nixpkgs/pkgs/applications/networking/flexget/default.nix index ac8e3129bb..665af1cf2e 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/flexget/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/flexget/default.nix @@ -5,7 +5,7 @@ python3Packages.buildPythonApplication rec { pname = "flexget"; - version = "3.5.11"; + version = "3.5.13"; format = "pyproject"; # Fetch from GitHub in order to use `requirements.in` @@ -13,7 +13,7 @@ python3Packages.buildPythonApplication rec { owner = "flexget"; repo = "flexget"; rev = "refs/tags/v${version}"; - hash = "sha256-KGeTzERLlsrBHQxskrMhFHw9XyYyl33bJJK+SN++EU4="; + hash = "sha256-0yO4prnYJkD7eiyrEOPHlDTsgGgRhQujsp8k2FsLYKI="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/applications/networking/freefilesync/default.nix b/third_party/nixpkgs/pkgs/applications/networking/freefilesync/default.nix index c0a69479d4..5ef5feb3a1 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/freefilesync/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/freefilesync/default.nix @@ -9,17 +9,18 @@ , libssh2 , openssl , wxGTK32 +, gitUpdater }: gcc12Stdenv.mkDerivation rec { pname = "freefilesync"; - version = "11.28"; + version = "11.29"; src = fetchFromGitHub { owner = "hkneptune"; repo = "FreeFileSync"; rev = "v${version}"; - sha256 = "sha256-3eYvXClMdOCdl35S1d7nP2kiYZZOjyydi2gKY62K/qM="; + sha256 = "sha256-UQ+CWqtcTwMGUTn6t3N+BkXs4qxddZtxDjcq7nz5F6U="; }; # Patches from ROSA Linux @@ -88,6 +89,10 @@ gcc12Stdenv.mkDerivation rec { runHook postInstall ''; + passthru.updateScript = gitUpdater { + rev-prefix = "v"; + }; + meta = with lib; { description = "Open Source File Synchronization & Backup Software"; homepage = "https://freefilesync.org"; diff --git a/third_party/nixpkgs/pkgs/applications/networking/ftp/taxi/default.nix b/third_party/nixpkgs/pkgs/applications/networking/ftp/taxi/default.nix index 411031f605..75e3b43a1a 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/ftp/taxi/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/ftp/taxi/default.nix @@ -52,9 +52,7 @@ stdenv.mkDerivation rec { patchShebangs meson/post_install.py ''; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { homepage = "https://github.com/Alecaddd/taxi"; diff --git a/third_party/nixpkgs/pkgs/applications/networking/ids/suricata/default.nix b/third_party/nixpkgs/pkgs/applications/networking/ids/suricata/default.nix index f2f8505568..49b88c9fd6 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/ids/suricata/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/ids/suricata/default.nix @@ -34,11 +34,11 @@ in stdenv.mkDerivation rec { pname = "suricata"; - version = "6.0.6"; + version = "6.0.8"; src = fetchurl { url = "https://www.openinfosecfoundation.org/download/${pname}-${version}.tar.gz"; - sha256 = "sha256-ABc2NPp2ruY244qQscAmFskD5CFzEH1HtBFJYLX76Dk="; + sha256 = "sha256-JTzjzA35Z62TcdbqjU7tkexZPfPtBOCCKcfPhXgMkaM="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/alfaview/default.nix b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/alfaview/default.nix index 87e96f7b62..c9b2c4a212 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/alfaview/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/alfaview/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { pname = "alfaview"; - version = "8.57.0"; + version = "8.58.2"; src = fetchurl { url = "https://production-alfaview-assets.alfaview.com/stable/linux/${pname}_${version}.deb"; - sha256 = "sha256-xYHi+lOONE2cxEcuuN2bWh5kF5fcfCNq2GII792IGro="; + sha256 = "sha256-z6GjIR9K4OWFuQTGBbP05aYFNa2sD1UW4e/GW01xj78="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/chatty/default.nix b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/chatty/default.nix index 541bcc72f5..e98bbeb4d3 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/chatty/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/chatty/default.nix @@ -29,16 +29,15 @@ stdenv.mkDerivation rec { pname = "chatty"; - version = "unstable-2022-09-20"; + version = "0.7.0_rc4"; src = fetchFromGitLab { domain = "source.puri.sm"; owner = "Librem5"; repo = "chatty"; - # https://source.puri.sm/Librem5/chatty/-/tree/247c53fd990f7472ddd1a92c2f9e1299ae3ef4e4 - rev = "247c53fd990f7472ddd1a92c2f9e1299ae3ef4e4"; + rev = "v${version}"; fetchSubmodules = true; - hash = "sha256-9hgQC0vLmmJJxrBWTdTIrJbSSwLS23uVoJri2ieCj4E="; + hash = "sha256-/8Y82PYlR9ucnT7/BsUk+STmsftpUvSNJM3cwG+Iv/A="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/deltachat-desktop/default.nix b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/deltachat-desktop/default.nix index 8fc3645431..eb4be8d98d 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/deltachat-desktop/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/deltachat-desktop/default.nix @@ -21,17 +21,17 @@ let libdeltachat' = libdeltachat.overrideAttrs (old: rec { - version = "1.102.0"; + version = "1.104.0"; src = fetchFromGitHub { owner = "deltachat"; repo = "deltachat-core-rust"; rev = version; - hash = "sha256-xw/lUNs39nkBrydpcgUBL3j6XrZFafKslxx6zUiElWw="; + hash = "sha256-+FQ6XE+CtvSNSgpEr8h0mcr9DCC6TvGgLrYGdw0Ve2o="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${old.pname}-${version}"; - hash = "sha256-CiqYKFABHcFSjYUH/qop1xWCoygQJajI7nhv04ElD10="; + hash = "sha256-c3tt+nYZksI/VhJk4bNHu9ZXeDTaA2aLAQo1BmuF+2g="; }; }); esbuild' = esbuild.override { @@ -48,16 +48,16 @@ let }; in buildNpmPackage rec { pname = "deltachat-desktop"; - version = "1.34.0"; + version = "1.34.1"; src = fetchFromGitHub { owner = "deltachat"; repo = "deltachat-desktop"; rev = "v${version}"; - hash = "sha256-M2ZLWaxVq9PvxJemwv+7jd0cXKQb6T5VCyLvIRF+9d0="; + hash = "sha256-/F1fU54eTM9mUaQe/Ex9DnTDb+fzl/1HNyYvLWE2BBU="; }; - npmDepsHash = "sha256-wCsPKEgRpPsNmM0HzvS5QjlPnw8COPrOhQRIf+vYeig="; + npmDepsHash = "sha256-3wzN7G27IGTlFZUE9RzQXfApVfaTc92Sbb+jjH/zeoc="; nativeBuildInputs = [ makeWrapper diff --git a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/discord/linux.nix b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/discord/linux.nix index 6d955128cb..72a9d2d3eb 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/discord/linux.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/discord/linux.nix @@ -5,6 +5,7 @@ , libXScrnSaver, libXcomposite, libXcursor, libXdamage, libXext, libXfixes , libXi, libXrandr, libXrender, libXtst, libxcb, libxshmfence, mesa, nspr, nss , pango, systemd, libappindicator-gtk3, libdbusmenu, writeScript, python3, runCommand +, wayland , branch , common-updater-scripts, withOpenASAR ? false }: @@ -83,6 +84,7 @@ stdenv.mkDerivation rec { libXScrnSaver libappindicator-gtk3 libdbusmenu + wayland ]; installPhase = '' diff --git a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/element/pin.json b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/element/pin.json index c92532b74b..64a164c9b0 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/element/pin.json +++ b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/element/pin.json @@ -1,7 +1,7 @@ { - "version": "1.11.16", - "desktopSrcHash": "EeED62HRpaWN91yxcDvwwNUWmDRU38lyT5ba1S4go6Q=", - "desktopYarnHash": "1f0bghcbzab2dkvxmvhhc0dzyk3js09v2sh93gsjsq9mkhld1k0w", - "webSrcHash": "T6UcGNm4i+Nc4Yk/mVFc4L9jxWQtOpjps1ZtEhilHW0=", - "webYarnHash": "1jyzym34lzadniqrysbm1m5agw03hzw6ymmdxpbay38afrhrciyk" + "version": "1.11.17", + "desktopSrcHash": "VB7p/ThiwphcCd3loSwQ61TthR2ji0nX6l32Jrgv/NE=", + "desktopYarnHash": "15jsznsqxvi1bs26pmb7zfrybl071k3g3g6i0pm34mzs2r9nvrii", + "webSrcHash": "YeXsDyyoQnWNDnfx/7fMHooi48ST+LiA5ACy0gBnQaQ=", + "webYarnHash": "1zniyg869glhajcmcgq34qwmhb4jq2hbjqhhz6a79p892yx97chp" } diff --git a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/fractal/default.nix b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/fractal/default.nix index 67762c63f7..b5c0db75a7 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/fractal/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/fractal/default.nix @@ -97,9 +97,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/pidgin-plugins/sipe/default.nix b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/pidgin-plugins/sipe/default.nix index fa314e82da..a014779970 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/pidgin-plugins/sipe/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/pidgin-plugins/sipe/default.nix @@ -25,6 +25,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ intltool ]; buildInputs = [ pidgin gmime libxml2 nss ]; + configureFlags = [ "--without-dbus" ]; enableParallelBuilding = true; postInstall = "ln -s \$out/lib/purple-2 \$out/share/pidgin-sipe"; diff --git a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/signal-cli/default.nix b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/signal-cli/default.nix index d102e144c5..f8037e1ef4 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/signal-cli/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/signal-cli/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { pname = "signal-cli"; - version = "0.11.5.1"; + version = "0.11.6"; # Building from source would be preferred, but is much more involved. src = fetchurl { url = "https://github.com/AsamK/signal-cli/releases/download/v${version}/signal-cli-${version}-Linux.tar.gz"; - sha256 = "sha256-VHQz7FlEugTv5gJrJr5WLdYHkoQ6lTlUP3JVy20j1mM="; + hash = "sha256-DWG67Jr2hDas1aL5Q+9MUjNKNLFpOFLsehYbJfy/rzg="; }; buildInputs = lib.optionals stdenv.isLinux [ libmatthew_java dbus dbus_java ]; diff --git a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix index de091aec53..6c7aed47c2 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix @@ -6,7 +6,7 @@ }; signal-desktop-beta = { dir = "Signal Beta"; - version = "6.2.0-beta.1"; - hash = "sha256-OA7DHe/sfW8xpqJPEu7BWotpnaJYj5SatPB21byZHrY="; + version = "6.2.0-beta.2"; + hash = "sha256-NVwX2xG8QGVjENy6fSA13WQyTlYuF5frcS3asDDg4Ik="; }; } diff --git a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/signal-desktop/generic.nix b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/signal-desktop/generic.nix index a0384895d5..ee1d6b8aed 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/signal-desktop/generic.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/signal-desktop/generic.nix @@ -47,6 +47,7 @@ , libdbusmenu , libpulseaudio , xdg-utils +, wayland }: stdenv.mkDerivation rec { @@ -112,6 +113,7 @@ stdenv.mkDerivation rec { libnotify libdbusmenu xdg-utils + wayland ]; unpackPhase = "dpkg-deb -x $src ."; diff --git a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/slack/default.nix b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/slack/default.nix index 7e3dd42b57..7bd88eaa75 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/slack/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/slack/default.nix @@ -34,6 +34,7 @@ , pango , pipewire , systemd +, wayland , xdg-utils , xorg }: @@ -121,6 +122,7 @@ let pipewire stdenv.cc.cc systemd + wayland xorg.libX11 xorg.libXScrnSaver xorg.libXcomposite diff --git a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix index 7c4b95a064..6fdc64adc1 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix @@ -23,13 +23,13 @@ let pname = "wire-desktop"; version = { - x86_64-darwin = "3.29.4477"; - x86_64-linux = "3.29.2997"; + x86_64-darwin = "3.30.4506"; + x86_64-linux = "3.30.3018"; }.${system} or throwSystem; - sha256 = { - x86_64-darwin = "19snbd53hjfcqgnz24r85a34fr120b1wps4pv4vymnkxjld2wifc"; - x86_64-linux = "0f5kkp93za4yr6ywdgph8zr6ivrbxq2gbskl8jysxawk1pz92pqf"; + hash = { + x86_64-darwin = "sha256-+htDeNIuucB4qzNBNYoSUH1DbfgouZS08G5hxPtIuzY="; + x86_64-linux = "sha256-46WjFA+E9M7RfTOM/Xoho+9ooToSgQiZaMlcZ3lJvBQ="; }.${system} or throwSystem; meta = with lib; { @@ -65,8 +65,8 @@ let src = fetchurl { url = "https://wire-app.wire.com/linux/debian/pool/main/" - + "Wire-${version}_amd64.deb"; - inherit sha256; + + "Wire-${version}_amd64.deb"; + inherit hash; }; desktopItem = makeDesktopItem { @@ -133,8 +133,8 @@ let src = fetchurl { url = "https://github.com/wireapp/wire-desktop/releases/download/" - + "macos%2F${version}/Wire.pkg"; - inherit sha256; + + "macos%2F${version}/Wire.pkg"; + inherit hash; }; buildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/networking/insync/default.nix b/third_party/nixpkgs/pkgs/applications/networking/insync/default.nix index feeb87ab3f..0c96262fff 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/insync/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/insync/default.nix @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { platforms = ["x86_64-linux"]; sourceProvenance = with lib.sourceTypes; [ binaryNativeCode ]; license = lib.licenses.unfree; - maintainers = [ lib.maintainers.benley ]; + maintainers = [ ]; homepage = "https://www.insynchq.com"; description = "Google Drive sync and backup with multiple account support"; longDescription = '' diff --git a/third_party/nixpkgs/pkgs/applications/networking/insync/v3.nix b/third_party/nixpkgs/pkgs/applications/networking/insync/v3.nix index cf68308176..933d228806 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/insync/v3.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/insync/v3.nix @@ -67,7 +67,7 @@ stdenv.mkDerivation rec { platforms = ["x86_64-linux"]; sourceProvenance = with lib.sourceTypes; [ binaryNativeCode ]; license = licenses.unfree; - maintainers = with maintainers; [ benley ]; + maintainers = with maintainers; [ ]; homepage = "https://www.insynchq.com"; description = "Google Drive sync and backup with multiple account support"; longDescription = '' diff --git a/third_party/nixpkgs/pkgs/applications/networking/mailreaders/evolution/evolution-ews/default.nix b/third_party/nixpkgs/pkgs/applications/networking/mailreaders/evolution/evolution-ews/default.nix index ba5f5d1022..78a647bf01 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/mailreaders/evolution/evolution-ews/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/mailreaders/evolution/evolution-ews/default.nix @@ -17,6 +17,7 @@ , substituteAll , _experimental-update-script-combinators , glib +, makeHardcodeGsettingsPatch }: stdenv.mkDerivation rec { @@ -64,9 +65,9 @@ stdenv.mkDerivation rec { ]; passthru = { - hardcodeGsettingsPatch = glib.mkHardcodeGsettingsPatch { + hardcodeGsettingsPatch = makeHardcodeGsettingsPatch { inherit src; - glib-schema-to-var = { + schemaIdToVariableMapping = { "org.gnome.evolution.mail" = "evo"; "org.gnome.evolution.calendar" = "evo"; }; diff --git a/third_party/nixpkgs/pkgs/applications/networking/mailreaders/mailnag/default.nix b/third_party/nixpkgs/pkgs/applications/networking/mailreaders/mailnag/default.nix index 7c3e5ea5c7..47c448c9b3 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/mailreaders/mailnag/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/mailreaders/mailnag/default.nix @@ -12,7 +12,7 @@ , gsettings-desktop-schemas , glib , gobject-introspection -# Available plugins (can be overriden) +# Available plugins (can be overridden) , availablePlugins # Used in the withPlugins interface at passthru, can be overrided directly, or # prefarably via e.g: `mailnag.withPlugins([mailnag.availablePlugins.goa])` diff --git a/third_party/nixpkgs/pkgs/applications/networking/mailreaders/tutanota-desktop/default.nix b/third_party/nixpkgs/pkgs/applications/networking/mailreaders/tutanota-desktop/default.nix index 6375e82124..283091ccc5 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/mailreaders/tutanota-desktop/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/mailreaders/tutanota-desktop/default.nix @@ -3,12 +3,12 @@ electron, libsecret }: stdenv.mkDerivation rec { pname = "tutanota-desktop"; - version = "3.98.20"; + version = "3.105.9"; src = fetchurl { url = "https://github.com/tutao/tutanota/releases/download/tutanota-desktop-release-${version}/${pname}-${version}-unpacked-linux.tar.gz"; name = "tutanota-desktop-${version}.tar.gz"; - sha256 = "sha256-ddRuIFmsZcyrZ/0T0Sk6pnmxuG5osZVYFw7NCmgvECc="; + sha256 = "sha256-PkAxtpyL4rXJfz+YgbVteOP1V0hlF25htvOCkEGFq4k="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/networking/mkchromecast/default.nix b/third_party/nixpkgs/pkgs/applications/networking/mkchromecast/default.nix index b0ed325119..58f381f7a4 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/mkchromecast/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/mkchromecast/default.nix @@ -12,6 +12,7 @@ , youtube-dl , opusTools , gst_all_1 +, enableSonos ? true }: let packages = [ vorbis-tools @@ -37,7 +38,7 @@ python3Packages.buildPythonApplication rec { sha256 = "sha256-dxsIcBPrZaXlsfzOEXhYj2qoK5LRducJG2ggMrMMl9Y="; }; - propagatedBuildInputs = with python3Packages; [ + propagatedBuildInputs = with python3Packages; ([ PyChromecast psutil mutagen @@ -45,7 +46,7 @@ python3Packages.buildPythonApplication rec { netifaces requests pyqt5 - ]; + ] ++ lib.optionals enableSonos [ soco ]); postPatch = '' substituteInPlace setup.py \ diff --git a/third_party/nixpkgs/pkgs/applications/networking/msmtp/default.nix b/third_party/nixpkgs/pkgs/applications/networking/msmtp/default.nix index 8006d81c92..df5c135456 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/msmtp/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/msmtp/default.nix @@ -16,9 +16,9 @@ , which , Security , withKeyring ? true -, libsecret ? null +, libsecret , withSystemd ? stdenv.isLinux -, systemd ? null +, systemd }: let @@ -41,7 +41,7 @@ let platforms = platforms.unix; }; - binaries = stdenv.mkDerivation rec { + binaries = stdenv.mkDerivation { pname = "msmtp-binaries"; inherit version src meta; @@ -62,7 +62,7 @@ let ''; }; - scripts = resholve.mkDerivation rec { + scripts = resholve.mkDerivation { pname = "msmtp-scripts"; inherit version src meta; diff --git a/third_party/nixpkgs/pkgs/applications/networking/ndppd/default.nix b/third_party/nixpkgs/pkgs/applications/networking/ndppd/default.nix index ccaf3e0bbb..df3bc9f9f2 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/ndppd/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/ndppd/default.nix @@ -11,12 +11,14 @@ stdenv.mkDerivation rec { sha256 = "0niri5q9qyyyw5lmjpxk19pv3v4srjvmvyd5k6ks99mvqczjx9c0"; }; + nativeBuildInputs = [ gzip ]; + makeFlags = [ "PREFIX=$(out)" ]; preConfigure = '' - substituteInPlace Makefile --replace /bin/gzip ${gzip}/bin/gzip + substituteInPlace Makefile --replace /bin/gzip gzip ''; postInstall = '' diff --git a/third_party/nixpkgs/pkgs/applications/networking/newsreaders/liferea/default.nix b/third_party/nixpkgs/pkgs/applications/networking/newsreaders/liferea/default.nix index b96d906fc9..362cdbbb0c 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/newsreaders/liferea/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/newsreaders/liferea/default.nix @@ -24,11 +24,11 @@ stdenv.mkDerivation rec { pname = "liferea"; - version = "1.14-RC2"; + version = "1.14-RC3"; src = fetchurl { url = "https://github.com/lwindolf/${pname}/releases/download/v${version}/${pname}-${version}.tar.bz2"; - sha256 = "UTK82s+7bzL+SyT40qDsqX8KTkITTpWtR/0VY/+OpcA="; + sha256 = "28xEGjzOKdrTlGF4OBEoDue9VVLrbiVgnoTKICfDp4M="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/networking/p2p/torrential/default.nix b/third_party/nixpkgs/pkgs/applications/networking/p2p/torrential/default.nix index 50dd38d8d2..4cf4e1becf 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/p2p/torrential/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/p2p/torrential/default.nix @@ -66,9 +66,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/networking/pcloud/default.nix b/third_party/nixpkgs/pkgs/applications/networking/pcloud/default.nix index 21b75cfe88..13175aaca6 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/pcloud/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/pcloud/default.nix @@ -15,23 +15,35 @@ # ^1 https://github.com/NixOS/nixpkgs/issues/69338 { - # Build dependencies - appimageTools, autoPatchelfHook, fetchzip, lib, stdenv + # Build dependencies + appimageTools +, autoPatchelfHook +, fetchzip +, lib +, stdenv - # Runtime dependencies; - # A few additional ones (e.g. Node) are already shipped together with the - # AppImage, so we don't have to duplicate them here. -, alsa-lib, dbus-glib, fuse, gsettings-desktop-schemas, gtk3, libdbusmenu-gtk2, libXdamage, nss, udev + # Runtime dependencies; + # A few additional ones (e.g. Node) are already shipped together with the + # AppImage, so we don't have to duplicate them here. +, alsa-lib +, dbus-glib +, fuse +, gsettings-desktop-schemas +, gtk3 +, libdbusmenu-gtk2 +, libXdamage +, nss +, udev }: let pname = "pcloud"; - version = "1.9.9"; - code = "XZWTVkVZQM0GNXA4hrFGPkefzUUWVLKOpPIX"; + version = "1.10.0"; + code = "XZCy4sVZGb7r8VpDE4SCv2QI3OYx1HYChIvy"; # Archive link's codes: https://www.pcloud.com/release-notes/linux.html src = fetchzip { url = "https://api.pcloud.com/getpubzip?code=${code}&filename=${pname}-${version}.zip"; - hash = "sha256-8566vKrE3/QCm4qW9KxEAO+r+YfMRYOhV2Da7qic48M="; + hash = "sha256-kzID1y/jVuqFfD/PIUR2TFa0AvxKVcfNQ4ZXiHx0gRk="; }; appimageContents = appimageTools.extractType2 { @@ -39,7 +51,8 @@ let src = "${src}/pcloud"; }; -in stdenv.mkDerivation { +in +stdenv.mkDerivation { inherit pname version; src = appimageContents; diff --git a/third_party/nixpkgs/pkgs/applications/networking/sync/rclone/default.nix b/third_party/nixpkgs/pkgs/applications/networking/sync/rclone/default.nix index 7568f45d68..6cdeaaf09e 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/sync/rclone/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/sync/rclone/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "rclone"; - version = "1.60.1"; + version = "1.61.1"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-ss4GTXnvWMwin1jn5yzmclS7SGh7NmPvdcDFa1ygwzg="; + sha256 = "sha256-mBnpmCzuMCXZPM3Tq2SsOPwEfTUn1StahkB5U/6Fe+A="; }; - vendorSha256 = "sha256-si5fzyPQUUTKkm/UVt8xfpJGK/4F6GM4HuAg1R0hzqQ="; + vendorSha256 = "sha256-EGNRKSlpdH/NNfLzSDL3lQzArVsVM6oRkyZm31V8cgM="; subPackages = [ "." ]; diff --git a/third_party/nixpkgs/pkgs/applications/networking/synology-drive-client/default.nix b/third_party/nixpkgs/pkgs/applications/networking/synology-drive-client/default.nix index f86be07dfe..dea70ffacd 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/synology-drive-client/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/synology-drive-client/default.nix @@ -2,7 +2,7 @@ let pname = "synology-drive-client"; baseUrl = "https://global.download.synology.com/download/Utility/SynologyDriveClient"; - version = "3.1.0-12923"; + version = "3.2.0-13258"; buildNumber = with lib; last (splitString "-" version); meta = with lib; { description = "Desktop application to synchronize files and folders between the computer and the Synology Drive server."; @@ -29,7 +29,7 @@ let src = fetchurl { url = "${baseUrl}/${version}/Ubuntu/Installer/x86_64/synology-drive-client-${buildNumber}.x86_64.deb"; - sha256 = "sha256-gL08uJbA2S+SuP1afMBmcJMIcu7QRzdiXgIMxSZQl/I="; + sha256 = "sha256-jnMwhirZphguW+hluhzD9aXDTQ9RuJgAtjh+Iy23c3w="; }; nativeBuildInputs = [ autoPatchelfHook dpkg ]; @@ -59,7 +59,7 @@ let src = fetchurl { url = "${baseUrl}/${version}/Mac/Installer/synology-drive-client-${buildNumber}.dmg"; - sha256 = "0pwm2xi1b9p9zmhy4dhix3aas49i183wxslyidfwvlaphic9qkxm"; + sha256 = "0hv0vgbvgqhzayc4przqhnkyvsykhw40hrwk6imvla00nix853wy"; }; nativeBuildInputs = [ cpio xar undmg ]; diff --git a/third_party/nixpkgs/pkgs/applications/networking/warp/default.nix b/third_party/nixpkgs/pkgs/applications/networking/warp/default.nix index 5a1a59d7c6..0c47fc323a 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/warp/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/warp/default.nix @@ -17,14 +17,14 @@ stdenv.mkDerivation rec { pname = "warp"; - version = "0.3.1"; + version = "0.3.2"; src = fetchFromGitLab { domain = "gitlab.gnome.org"; owner = "World"; repo = pname; rev = "v${version}"; - hash = "sha256-0zjtaF0RwI7Sj2D5vRaiBJI+Bp/F17VO9ywMRqZyqxI="; + hash = "sha256-oKkZC9fi5xPnLTI00MnG2gMjzMZHMNFI77ztbR4KQo4="; }; postPatch = '' @@ -34,7 +34,7 @@ stdenv.mkDerivation rec { cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-HotArxXfmT6Gw6ZZZQ4X6bTx0EFb6vZLbXxhddmGID8="; + hash = "sha256-sbyAyjxpol2SBxoLUsiPGfkP2diBPgJW0vEDHYWgmLU="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/networking/weather/meteo/default.nix b/third_party/nixpkgs/pkgs/applications/networking/weather/meteo/default.nix index 8acd862053..c9f194a5a8 100644 --- a/third_party/nixpkgs/pkgs/applications/networking/weather/meteo/default.nix +++ b/third_party/nixpkgs/pkgs/applications/networking/weather/meteo/default.nix @@ -55,9 +55,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/office/PageEdit/default.nix b/third_party/nixpkgs/pkgs/applications/office/PageEdit/default.nix index 02a69a0fe1..4d52782c85 100644 --- a/third_party/nixpkgs/pkgs/applications/office/PageEdit/default.nix +++ b/third_party/nixpkgs/pkgs/applications/office/PageEdit/default.nix @@ -2,13 +2,13 @@ mkDerivation rec { pname = "PageEdit"; - version = "1.9.10"; + version = "1.9.20"; src = fetchFromGitHub { owner = "Sigil-Ebook"; repo = pname; rev = version; - hash = "sha256-y2Z5enEptiOrwEGBKlo4H4I9ojIPG9KP3BlvTCj4PVY="; + hash = "sha256-naoflFANeMwabbdrNL3+ndvEXYT4Yqf+Mo77HcCexHE="; }; nativeBuildInputs = [ cmake qttranslations ]; diff --git a/third_party/nixpkgs/pkgs/applications/office/agenda/default.nix b/third_party/nixpkgs/pkgs/applications/office/agenda/default.nix index 25f394e33f..bcffa8ebf7 100644 --- a/third_party/nixpkgs/pkgs/applications/office/agenda/default.nix +++ b/third_party/nixpkgs/pkgs/applications/office/agenda/default.nix @@ -51,9 +51,7 @@ stdenv.mkDerivation rec { doCheck = true; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/office/appflowy/default.nix b/third_party/nixpkgs/pkgs/applications/office/appflowy/default.nix index 764a05a238..d0b71ee92c 100644 --- a/third_party/nixpkgs/pkgs/applications/office/appflowy/default.nix +++ b/third_party/nixpkgs/pkgs/applications/office/appflowy/default.nix @@ -13,11 +13,11 @@ stdenv.mkDerivation rec { pname = "appflowy"; - version = "0.0.8.1"; + version = "0.0.9"; src = fetchzip { url = "https://github.com/AppFlowy-IO/appflowy/releases/download/${version}/AppFlowy-linux-x86.tar.gz"; - sha256 = "sha256-QMlJSNjN6pe9NNWoCFwo++Ic4/pbDPEjHFabcV2lZo8="; + sha256 = "sha256-E75ZqenCs5zWBERYoIrWc2v5CyjGKLrfsae1RCi/qNQ="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/office/hledger-check-fancyassertions/default.nix b/third_party/nixpkgs/pkgs/applications/office/hledger-check-fancyassertions/default.nix index 6edef5b621..9ffac0f312 100644 --- a/third_party/nixpkgs/pkgs/applications/office/hledger-check-fancyassertions/default.nix +++ b/third_party/nixpkgs/pkgs/applications/office/hledger-check-fancyassertions/default.nix @@ -7,7 +7,7 @@ stdenvNoCC.mkDerivation rec { src = fetchurl { name = "hledger-check-fancyassertion-${version}.hs"; url = "https://raw.githubusercontent.com/simonmichael/hledger/hledger-lib-${version}/bin/hledger-check-fancyassertions.hs"; - sha256 = "1xy3ssxnwybq40nlffz95w7m9xbzf8ysb13svg0i8g5sfgrw11vk"; + sha256 = "0lyyz8dqkknd9d073l613kdkaqd9r6ymdw94d7mwp17pxvfr17wf"; }; dontUnpack = true; diff --git a/third_party/nixpkgs/pkgs/applications/office/khronos/default.nix b/third_party/nixpkgs/pkgs/applications/office/khronos/default.nix index 55c672a1dc..26a4352035 100644 --- a/third_party/nixpkgs/pkgs/applications/office/khronos/default.nix +++ b/third_party/nixpkgs/pkgs/applications/office/khronos/default.nix @@ -44,9 +44,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/office/notes-up/default.nix b/third_party/nixpkgs/pkgs/applications/office/notes-up/default.nix index 2f1bcab064..ca1f1c1595 100644 --- a/third_party/nixpkgs/pkgs/applications/office/notes-up/default.nix +++ b/third_party/nixpkgs/pkgs/applications/office/notes-up/default.nix @@ -59,9 +59,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/office/paperless-ngx/default.nix b/third_party/nixpkgs/pkgs/applications/office/paperless-ngx/default.nix index 403e3d0d88..eaad04c64f 100644 --- a/third_party/nixpkgs/pkgs/applications/office/paperless-ngx/default.nix +++ b/third_party/nixpkgs/pkgs/applications/office/paperless-ngx/default.nix @@ -20,20 +20,6 @@ let packageOverrides = self: super: { django = super.django_4; - # use paperless-ngx version of django-q - # see https://github.com/paperless-ngx/paperless-ngx/pull/1014 - django-q = super.django-q.overridePythonAttrs (oldAttrs: { - src = fetchFromGitHub { - owner = "paperless-ngx"; - repo = "django-q"; - hash = "sha256-alu7tZwUn77xhUF9c/aGmwRwO//mR/FucXjvXUl/6ek="; - rev = "8b5289d8caf36f67fb99448e76ead20d5b498c1b"; - }; - # due to paperless-ngx modification of the pyproject.toml file - # the patch is not needed any more - patches = [ ]; - }); - aioredis = super.aioredis.overridePythonAttrs (oldAttrs: rec { version = "1.3.1"; src = oldAttrs.src.override { @@ -93,12 +79,12 @@ let in python.pkgs.pythonPackages.buildPythonApplication rec { pname = "paperless-ngx"; - version = "1.9.2"; + version = "1.10.2"; - # Fetch the release tarball instead of a git ref because it contains the prebuilt fontend + # Fetch the release tarball instead of a git ref because it contains the prebuilt frontend src = fetchurl { url = "https://github.com/paperless-ngx/paperless-ngx/releases/download/v${version}/${pname}-v${version}.tar.xz"; - hash = "sha256-fafjVXRfzFrINzI/Ivfm1VY4YpemHkHwThBP54XoXM4="; + hash = "sha256-uOrRHHNqIYsDbzKcA7EsYZjadpLyAB4Ks+PU+BNsTWE="; }; format = "other"; @@ -112,6 +98,7 @@ python.pkgs.pythonPackages.buildPythonApplication rec { autobahn automat blessed + celery certifi cffi channels-redis @@ -124,11 +111,11 @@ python.pkgs.pythonPackages.buildPythonApplication rec { cryptography daphne dateparser + django-celery-results django-cors-headers django-extensions django-filter django-picklefield - django-q django djangorestframework filelock @@ -171,6 +158,7 @@ python.pkgs.pythonPackages.buildPythonApplication rec { pytz pyyaml pyzbar + rapidfuzz redis regex reportlab @@ -199,13 +187,6 @@ python.pkgs.pythonPackages.buildPythonApplication rec { zope_interface ]; - # paperless-ngx includes the bundled django-q version. This will - # conflict with the tests and is not needed since we overrode the - # django-q version with the paperless-ngx version - postPatch = '' - rm -rf src/django-q - ''; - # Compile manually because `pythonRecompileBytecodeHook` only works for # files in `python.sitePackages` postBuild = '' @@ -219,6 +200,9 @@ python.pkgs.pythonPackages.buildPythonApplication rec { makeWrapper $out/lib/paperless-ngx/src/manage.py $out/bin/paperless-ngx \ --prefix PYTHONPATH : "$PYTHONPATH" \ --prefix PATH : "${path}" + makeWrapper ${python.pkgs.celery}/bin/celery $out/bin/celery \ + --prefix PYTHONPATH : "$PYTHONPATH:$out/lib/paperless-ngx/src" \ + --prefix PATH : "${path}" ''; checkInputs = with python.pkgs.pythonPackages; [ @@ -246,8 +230,19 @@ python.pkgs.pythonPackages.buildPythonApplication rec { # Disable unneeded code coverage test substituteInPlace src/setup.cfg \ --replace "--cov --cov-report=html" "" + # OCR on NixOS recognizes the space in the picture, upstream CI doesn't. + # See https://github.com/paperless-ngx/paperless-ngx/pull/2216 + substituteInPlace src/paperless_tesseract/tests/test_parser.py \ + --replace "this is awebp document" "this is a webp document" ''; + disabledTests = [ + # FileNotFoundError(2, 'No such file or directory'): /build/tmp... + "test_script_with_output" + # AssertionError: 10 != 4 (timezone/time issue) + # Due to getting local time from modification date in test_consumer.py + "testNormalOperation" + ]; passthru = { inherit python path; diff --git a/third_party/nixpkgs/pkgs/applications/office/portfolio/default.nix b/third_party/nixpkgs/pkgs/applications/office/portfolio/default.nix index 6e5941bd3e..64dc3f400e 100644 --- a/third_party/nixpkgs/pkgs/applications/office/portfolio/default.nix +++ b/third_party/nixpkgs/pkgs/applications/office/portfolio/default.nix @@ -27,11 +27,11 @@ let in stdenv.mkDerivation rec { pname = "PortfolioPerformance"; - version = "0.59.5"; + version = "0.60.0"; src = fetchurl { url = "https://github.com/buchen/portfolio/releases/download/${version}/PortfolioPerformance-${version}-linux.gtk.x86_64.tar.gz"; - sha256 = "sha256-6AEc9wc3/8AubPvqq8s9R1RnO+P8+92UsNEt6AdQv+w="; + sha256 = "sha256-L4ZLlxHsnJrvrrrX56Z+agjnaMl472Izm4Un1uaNqZA="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/office/spice-up/default.nix b/third_party/nixpkgs/pkgs/applications/office/spice-up/default.nix index 9c716dfd9a..93376ed292 100644 --- a/third_party/nixpkgs/pkgs/applications/office/spice-up/default.nix +++ b/third_party/nixpkgs/pkgs/applications/office/spice-up/default.nix @@ -55,9 +55,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/office/treesheets/default.nix b/third_party/nixpkgs/pkgs/applications/office/treesheets/default.nix index 33ac5b8b5e..30e6835ed3 100644 --- a/third_party/nixpkgs/pkgs/applications/office/treesheets/default.nix +++ b/third_party/nixpkgs/pkgs/applications/office/treesheets/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "treesheets"; - version = "unstable-2022-11-11"; + version = "unstable-2022-12-13"; src = fetchFromGitHub { owner = "aardappel"; repo = "treesheets"; - rev = "94881402b4730f598a536d8cddb3314eaf16defc"; - sha256 = "+fv05KqfhpFeufUduOikXJuQmZfOq+i97B8kP//hsk0="; + rev = "321a1df0b3364ffa9a29c6ad6e6e93d203e4cf48"; + sha256 = "DGYwJKfWhnCQ5rUgY232k+SuFmj2xEHAPCqPrV2uTXI="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/plasma-mobile/alligator.nix b/third_party/nixpkgs/pkgs/applications/plasma-mobile/alligator.nix index b88c8e3c60..4470141af2 100644 --- a/third_party/nixpkgs/pkgs/applications/plasma-mobile/alligator.nix +++ b/third_party/nixpkgs/pkgs/applications/plasma-mobile/alligator.nix @@ -7,6 +7,7 @@ , kconfig , kcoreaddons , ki18n +, kirigami-addons , kirigami2 , qtquickcontrols2 , syndication @@ -24,6 +25,7 @@ mkDerivation rec { kconfig kcoreaddons ki18n + kirigami-addons kirigami2 qtquickcontrols2 syndication diff --git a/third_party/nixpkgs/pkgs/applications/plasma-mobile/angelfish.nix b/third_party/nixpkgs/pkgs/applications/plasma-mobile/angelfish.nix index 5ed6cec01a..8158e4d6ea 100644 --- a/third_party/nixpkgs/pkgs/applications/plasma-mobile/angelfish.nix +++ b/third_party/nixpkgs/pkgs/applications/plasma-mobile/angelfish.nix @@ -19,8 +19,8 @@ , srcs # These must be updated in tandem with package updates. -, cargoShaForVersion ? "22.09" -, cargoSha256 ? "sha256-uxLvAhRV185srZZ0ZMsLRevAyMmajXERPRYotMcnLJA=" +, cargoShaForVersion ? "22.11" +, cargoSha256 ? "sha256-l1+nRXGt6Oga9yFJ3sVNitUN4XNcVjT1bJwi2XlleF4=" }: # Guard against incomplete updates. diff --git a/third_party/nixpkgs/pkgs/applications/plasma-mobile/audiotube.nix b/third_party/nixpkgs/pkgs/applications/plasma-mobile/audiotube.nix index ee98e524af..cb87fe0ed2 100644 --- a/third_party/nixpkgs/pkgs/applications/plasma-mobile/audiotube.nix +++ b/third_party/nixpkgs/pkgs/applications/plasma-mobile/audiotube.nix @@ -3,11 +3,14 @@ , extra-cmake-modules , gcc11 +, wrapGAppsHook +, gst_all_1 , kcoreaddons , kcrash , ki18n , kirigami2 +, qtimageformats , qtmultimedia , qtquickcontrols2 , python3Packages @@ -16,10 +19,9 @@ mkDerivation rec { pname = "audiotube"; - postPatch = "sed '1i#include ' -i src/ytmusic.cpp"; - nativeBuildInputs = [ extra-cmake-modules + wrapGAppsHook gcc11 # doesn't build with GCC 9 from stdenv on aarch64 python3Packages.wrapPython python3Packages.pybind11 @@ -30,9 +32,15 @@ mkDerivation rec { kcrash ki18n kirigami2 + qtimageformats qtmultimedia qtquickcontrols2 - ] ++ pythonPath; + ] ++ (with gst_all_1; [ + gst-plugins-bad + gst-plugins-base + gst-plugins-good + gstreamer + ]) ++ pythonPath; pythonPath = with python3Packages; [ yt-dlp @@ -42,7 +50,9 @@ mkDerivation rec { preFixup = '' buildPythonPath "$pythonPath" qtWrapperArgs+=(--prefix PYTHONPATH : "$program_PYTHONPATH") + qtWrapperArgs+=("''${gappsWrapperArgs[@]}") ''; + dontWrapGApps = true; meta = with lib; { description = "Client for YouTube Music"; diff --git a/third_party/nixpkgs/pkgs/applications/plasma-mobile/default.nix b/third_party/nixpkgs/pkgs/applications/plasma-mobile/default.nix index 5c3caf42eb..48a3f1281f 100644 --- a/third_party/nixpkgs/pkgs/applications/plasma-mobile/default.nix +++ b/third_party/nixpkgs/pkgs/applications/plasma-mobile/default.nix @@ -77,7 +77,7 @@ let plasma-dialer = callPackage ./plasma-dialer.nix {}; plasma-phonebook = callPackage ./plasma-phonebook.nix {}; plasma-settings = callPackage ./plasma-settings.nix {}; - plasmatube = callPackage ./plasmatube.nix {}; + plasmatube = callPackage ./plasmatube {}; spacebar = callPackage ./spacebar.nix { inherit srcs; }; }; diff --git a/third_party/nixpkgs/pkgs/applications/plasma-mobile/fetch.sh b/third_party/nixpkgs/pkgs/applications/plasma-mobile/fetch.sh index eca9970052..96bb4eb090 100644 --- a/third_party/nixpkgs/pkgs/applications/plasma-mobile/fetch.sh +++ b/third_party/nixpkgs/pkgs/applications/plasma-mobile/fetch.sh @@ -1 +1 @@ -WGET_ARGS=( https://download.kde.org/stable/plasma-mobile/22.09/ -A '*.tar.xz' ) +WGET_ARGS=( https://download.kde.org/stable/plasma-mobile/22.11/ -A '*.tar.xz' ) diff --git a/third_party/nixpkgs/pkgs/applications/plasma-mobile/kclock.nix b/third_party/nixpkgs/pkgs/applications/plasma-mobile/kclock.nix index 058f536d79..6212fa8b04 100644 --- a/third_party/nixpkgs/pkgs/applications/plasma-mobile/kclock.nix +++ b/third_party/nixpkgs/pkgs/applications/plasma-mobile/kclock.nix @@ -8,6 +8,7 @@ , kcoreaddons , kdbusaddons , ki18n +, kirigami-addons , kirigami2 , knotifications , plasma-framework @@ -28,6 +29,7 @@ mkDerivation rec { kcoreaddons kdbusaddons ki18n + kirigami-addons kirigami2 knotifications plasma-framework diff --git a/third_party/nixpkgs/pkgs/applications/plasma-mobile/krecorder.nix b/third_party/nixpkgs/pkgs/applications/plasma-mobile/krecorder.nix index 191a0bddb6..71164d1b02 100644 --- a/third_party/nixpkgs/pkgs/applications/plasma-mobile/krecorder.nix +++ b/third_party/nixpkgs/pkgs/applications/plasma-mobile/krecorder.nix @@ -9,6 +9,7 @@ , ki18n , kirigami2 , kirigami-addons +, kwindowsystem , qtmultimedia , qtquickcontrols2 }: @@ -27,6 +28,7 @@ mkDerivation rec { ki18n kirigami2 kirigami-addons + kwindowsystem qtmultimedia qtquickcontrols2 ]; diff --git a/third_party/nixpkgs/pkgs/applications/plasma-mobile/neochat.nix b/third_party/nixpkgs/pkgs/applications/plasma-mobile/neochat.nix index 2ff2214478..2f655d5a9e 100644 --- a/third_party/nixpkgs/pkgs/applications/plasma-mobile/neochat.nix +++ b/third_party/nixpkgs/pkgs/applications/plasma-mobile/neochat.nix @@ -12,6 +12,7 @@ , kdbusaddons , ki18n , kio +, kirigami-addons , kirigami2 , kitemmodels , knotifications @@ -47,6 +48,7 @@ gcc11Stdenv.mkDerivation rec { kdbusaddons kio ki18n + kirigami-addons kirigami2 kitemmodels knotifications diff --git a/third_party/nixpkgs/pkgs/applications/plasma-mobile/plasma-dialer.nix b/third_party/nixpkgs/pkgs/applications/plasma-mobile/plasma-dialer.nix index 6c453e3af7..1c2223e3c8 100644 --- a/third_party/nixpkgs/pkgs/applications/plasma-mobile/plasma-dialer.nix +++ b/third_party/nixpkgs/pkgs/applications/plasma-mobile/plasma-dialer.nix @@ -10,6 +10,7 @@ , kdbusaddons , ki18n , kio +, kirigami-addons , kirigami2 , knotifications , kpeople @@ -44,6 +45,7 @@ mkDerivation rec { kdbusaddons ki18n kio + kirigami-addons kirigami2 knotifications kpeople diff --git a/third_party/nixpkgs/pkgs/applications/plasma-mobile/plasmatube/0001-Add-placeholders-for-runtime-dependencies.patch b/third_party/nixpkgs/pkgs/applications/plasma-mobile/plasmatube/0001-Add-placeholders-for-runtime-dependencies.patch new file mode 100644 index 0000000000..704b92b2b0 --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/plasma-mobile/plasmatube/0001-Add-placeholders-for-runtime-dependencies.patch @@ -0,0 +1,25 @@ +From 7a9405ed02b0d86839644a2c237ca7ca8b891b76 Mon Sep 17 00:00:00 2001 +From: Samuel Dionne-Riel +Date: Wed, 30 Nov 2022 21:07:56 -0500 +Subject: [PATCH] Add placeholders for runtime dependencies + +--- + src/videomodel.cpp | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/src/videomodel.cpp b/src/videomodel.cpp +index 4bb3451..b558f31 100644 +--- a/src/videomodel.cpp ++++ b/src/videomodel.cpp +@@ -121,7 +121,7 @@ QString VideoModel::remoteUrl() + return {}; + } + +- QString youtubeDl = QStringLiteral("yt-dlp"); ++ QString youtubeDl = QStringLiteral("@yt-dlp@"); + QStringList arguments; + arguments << QLatin1String("--dump-json") + << m_videoId; +-- +2.38.0 + diff --git a/third_party/nixpkgs/pkgs/applications/plasma-mobile/plasmatube.nix b/third_party/nixpkgs/pkgs/applications/plasma-mobile/plasmatube/default.nix similarity index 67% rename from third_party/nixpkgs/pkgs/applications/plasma-mobile/plasmatube.nix rename to third_party/nixpkgs/pkgs/applications/plasma-mobile/plasmatube/default.nix index 894af98b6d..81041b2293 100644 --- a/third_party/nixpkgs/pkgs/applications/plasma-mobile/plasmatube.nix +++ b/third_party/nixpkgs/pkgs/applications/plasma-mobile/plasmatube/default.nix @@ -2,6 +2,7 @@ , mkDerivation , cmake , extra-cmake-modules +, wrapGAppsHook , gst_all_1 , kcoreaddons , kdeclarative @@ -9,6 +10,7 @@ , kirigami2 , qtmultimedia , qtquickcontrols2 +, yt-dlp }: mkDerivation { @@ -16,6 +18,7 @@ mkDerivation { nativeBuildInputs = [ extra-cmake-modules + wrapGAppsHook ]; buildInputs = [ @@ -32,6 +35,20 @@ mkDerivation { gstreamer ]); + patches = [ + ./0001-Add-placeholders-for-runtime-dependencies.patch + ]; + + postPatch = '' + substituteInPlace src/videomodel.cpp \ + --replace "@yt-dlp@" "${yt-dlp}/bin/yt-dlp" + ''; + + preFixup = '' + qtWrapperArgs+=("''${gappsWrapperArgs[@]}") + ''; + dontWrapGApps = true; + meta = { description = "Youtube player powered by an invidious server"; homepage = "https://invent.kde.org/plasma-mobile/plasmatube"; diff --git a/third_party/nixpkgs/pkgs/applications/plasma-mobile/srcs.nix b/third_party/nixpkgs/pkgs/applications/plasma-mobile/srcs.nix index 5bc824c441..a30966847a 100644 --- a/third_party/nixpkgs/pkgs/applications/plasma-mobile/srcs.nix +++ b/third_party/nixpkgs/pkgs/applications/plasma-mobile/srcs.nix @@ -4,195 +4,195 @@ { alligator = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/alligator-22.09.tar.xz"; - sha256 = "0krys21df6mlyi2zxdxgqx02k1q7njliz0nsxcygxrd89ajxlslb"; - name = "alligator-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/alligator-22.11.tar.xz"; + sha256 = "02hg42mmvykq71my6wbgc3yri4c3mr4bp73b7p21j1b8m3x0ycsl"; + name = "alligator-22.11.tar.xz"; }; }; angelfish = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/angelfish-22.09.tar.xz"; - sha256 = "1blhn84xka11zjwqimr30qv94jp5slfcmc44xcjxginl3n6hicwx"; - name = "angelfish-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/angelfish-22.11.tar.xz"; + sha256 = "07gp6468c7rhf3hzzk6qyz4kcah0s1wnn5r3mx7qmg777xaans9y"; + name = "angelfish-22.11.tar.xz"; }; }; audiotube = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/audiotube-22.09.tar.xz"; - sha256 = "1ay3qrg8lnw209kwmgm2ll5k1gbp2q694g6w837xl2wjy792vqw8"; - name = "audiotube-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/audiotube-22.11.tar.xz"; + sha256 = "0ga7ag8v9l91j5rrn02kk73zl29lwigcql1xfh7yw5cnky3xd13q"; + name = "audiotube-22.11.tar.xz"; }; }; calindori = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/calindori-22.09.tar.xz"; - sha256 = "1pwgdqznp76mhk0ikzjhy3c67qgk91kgv69ygqwzlh5hwiw5sl4n"; - name = "calindori-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/calindori-22.11.tar.xz"; + sha256 = "1mgdd61zmnjbpcwkaq2aiawksf1s86b05sq502by6gpdrwndhb5c"; + name = "calindori-22.11.tar.xz"; }; }; kalk = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/kalk-22.09.tar.xz"; - sha256 = "0sci3jv3asjxahcdz2vkmh90fbffx8lfj1cy5kqnpijdxcm10gfq"; - name = "kalk-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/kalk-22.11.tar.xz"; + sha256 = "0ri39455341nw6bn0lphky6n2b4ib9g4i24f6gzc0adnbhbpxdiq"; + name = "kalk-22.11.tar.xz"; }; }; kasts = { - version = "22.09.2"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/kasts-22.09.2.tar.xz"; - sha256 = "10i0b8k1k0ki8pq8hsj979y7np75iaq49bxkyj95zzci9g73vd59"; - name = "kasts-22.09.2.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/kasts-22.11.tar.xz"; + sha256 = "049700i15cw07c6053iml1q3h5mni24kdf8nvkdafdafhslb84i9"; + name = "kasts-22.11.tar.xz"; }; }; kclock = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/kclock-22.09.tar.xz"; - sha256 = "18b5lncgh9vc94bgrdmzigi853j4l7hqrvggk4hfcklj4pnv1bav"; - name = "kclock-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/kclock-22.11.tar.xz"; + sha256 = "02v64zfbv1g3q4w79d0r8rxqiqsnxms7dgkjv09bp1gl1asqx354"; + name = "kclock-22.11.tar.xz"; }; }; keysmith = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/keysmith-22.09.tar.xz"; - sha256 = "0w3vvmp9rn6ahly2fm9n6f4glfr7d84bfvj33mrs5pn7n99h7jgy"; - name = "keysmith-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/keysmith-22.11.tar.xz"; + sha256 = "1aimsgwk80yvncbsjnaxvr6aj8y4g40dpwfv0qi0k7b3xkrmqdk5"; + name = "keysmith-22.11.tar.xz"; }; }; khealthcertificate = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/khealthcertificate-22.09.tar.xz"; - sha256 = "16vkjpyxwx34pvdpnci0l6mx2bdjialiscjvbdx53xbsq9ff701k"; - name = "khealthcertificate-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/khealthcertificate-22.11.tar.xz"; + sha256 = "0gw6j70k0nvbfb1vfj8b64vfipdckzd8hqqmp9vrmsg7y8g8n0hi"; + name = "khealthcertificate-22.11.tar.xz"; }; }; koko = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/koko-22.09.tar.xz"; - sha256 = "1z3ysc2f1agbkmm2cxa87x5rk2nx9fjv3czlvcsn8s5ssfdws3gl"; - name = "koko-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/koko-22.11.tar.xz"; + sha256 = "1jqjjd9spyppdbijdnvci742wj80p10pfbjp1hyc0y4zdjic67bv"; + name = "koko-22.11.tar.xz"; }; }; kongress = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/kongress-22.09.tar.xz"; - sha256 = "0pjp2s774sgw2dklqib8alm1a9fkixy3s92i2v8v00znx08zf2jz"; - name = "kongress-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/kongress-22.11.tar.xz"; + sha256 = "03r8xck9vxl3al3f5v6g0yzqzs3yxl3lg7zg73ik22q6z2rb1adb"; + name = "kongress-22.11.tar.xz"; }; }; krecorder = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/krecorder-22.09.tar.xz"; - sha256 = "0kcgw7bsyw3bhai2djcq3qjn5ims7i4qbvpm7nwpjkm1p3m7fjii"; - name = "krecorder-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/krecorder-22.11.tar.xz"; + sha256 = "1wiihcp1c0wc7ssj9hj18rnzf8synaxmq6b0m2m286x4zibl50wb"; + name = "krecorder-22.11.tar.xz"; }; }; ktrip = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/ktrip-22.09.tar.xz"; - sha256 = "0x9s4yh2nvy7zmg3ds9bn8ir6wx10i8d0mvfaylbzb39rcabpmrl"; - name = "ktrip-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/ktrip-22.11.tar.xz"; + sha256 = "07mjf9jpj20ixhswy4byqy3m4sr1qylwlvq2prabn11j42ahpsy7"; + name = "ktrip-22.11.tar.xz"; }; }; kweather = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/kweather-22.09.tar.xz"; - sha256 = "0z3z659y1r1jry02w0hxwcpghkgxgqiwj1kqck07vlg8ks7lz1jz"; - name = "kweather-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/kweather-22.11.tar.xz"; + sha256 = "0sqc74yp5hvrjagax6nj0gm4qvbxqr66706yh12abcn9gpl33ndl"; + name = "kweather-22.11.tar.xz"; }; }; neochat = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/neochat-22.09.tar.xz"; - sha256 = "1j8p6mv89q1krjjbc9n26r83csqpxwd03zzhvzxxm53334qwqdci"; - name = "neochat-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/neochat-22.11.tar.xz"; + sha256 = "1gnhk9hww05bc4y8jd4sg3146c6m96ds2saajrnzyc6963j2ndi5"; + name = "neochat-22.11.tar.xz"; }; }; plasma-dialer = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/plasma-dialer-22.09.tar.xz"; - sha256 = "1wk8q5lc15d53viqyknsww1hgci1rxmnra4hj887fabnj0id29rs"; - name = "plasma-dialer-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/plasma-dialer-22.11.tar.xz"; + sha256 = "1qx7xmvfszpsrb2jylnwfs8rhr09kxvy5vnyzzcds248ljh5l6dy"; + name = "plasma-dialer-22.11.tar.xz"; }; }; plasma-phonebook = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/plasma-phonebook-22.09.tar.xz"; - sha256 = "1wsv330sfjh78fg98kd2g6a4bsmdyf7gn9r3aqazci7p7i5n2ln0"; - name = "plasma-phonebook-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/plasma-phonebook-22.11.tar.xz"; + sha256 = "02sj6v18w63ixy0c93fm4j9n4q98497qrb509q84618gry4cazly"; + name = "plasma-phonebook-22.11.tar.xz"; }; }; plasma-settings = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/plasma-settings-22.09.tar.xz"; - sha256 = "0jq2r7ckz27a8r41n4jn61wlrpcx0qwlasipig4jz7rc9i0ayfka"; - name = "plasma-settings-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/plasma-settings-22.11.tar.xz"; + sha256 = "0pg71plcbn4zkwxwcvay9swaa5xn3mnljdpnh4i8f86x2pa1pq5j"; + name = "plasma-settings-22.11.tar.xz"; }; }; plasmatube = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/plasmatube-22.09.tar.xz"; - sha256 = "00w9p5fcpv4s406lmcdcbrxf19sgkvf9yy8pfjmf1asvvvi8bpnk"; - name = "plasmatube-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/plasmatube-22.11.tar.xz"; + sha256 = "0vgxvyw4yl91kaj9cnjf455mpj4a5rh5f1z0in8k9p2jbs8wmjil"; + name = "plasmatube-22.11.tar.xz"; }; }; qmlkonsole = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/qmlkonsole-22.09.tar.xz"; - sha256 = "19bf9f4vxa8arnl1zjappg6kh21br131cbsx902qnpv6y0r3swz1"; - name = "qmlkonsole-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/qmlkonsole-22.11.tar.xz"; + sha256 = "03hwyrl6rb7yidw0nadis6csb6snpfv137j46rbpl35vrqrnrh5i"; + name = "qmlkonsole-22.11.tar.xz"; }; }; spacebar = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/spacebar-22.09.tar.xz"; - sha256 = "0fmk7fa7i67l8ff0amn80yxhf05vf0j9c42zj6qg5p30d1j31pbl"; - name = "spacebar-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/spacebar-22.11.tar.xz"; + sha256 = "1q0nyfvssiz5i19wyk4pvazax3vvk945cmknw4l51mpcc3hnc1v5"; + name = "spacebar-22.11.tar.xz"; }; }; telly-skout = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/telly-skout-22.09.tar.xz"; - sha256 = "1byakylbjjxyz6bh59dydqnvh8c627jpx39ih1ylrdl8jlkd0scy"; - name = "telly-skout-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/telly-skout-22.11.tar.xz"; + sha256 = "0sfdia4jwcv24z5d3qykqv7ncr2c5v7ywq471nggwpcr22bwzn6x"; + name = "telly-skout-22.11.tar.xz"; }; }; tokodon = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/tokodon-22.09.tar.xz"; - sha256 = "123vyq9vfl48l7ssrymvkhxlkwihplnssal0wvz4n2dk59byl46p"; - name = "tokodon-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/tokodon-22.11.tar.xz"; + sha256 = "0afrqih1bkgg0xqr81sq9q3glyhy8347p8vzddl42zsxax9wki59"; + name = "tokodon-22.11.tar.xz"; }; }; vakzination = { - version = "22.09"; + version = "22.11"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/22.09/vakzination-22.09.tar.xz"; - sha256 = "01xzc1di57j0fgzkqwa39jng0fd90laya0rj85vjda7mbh2lxxk6"; - name = "vakzination-22.09.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.11/vakzination-22.11.tar.xz"; + sha256 = "0587p5q9v0lh3nz00dfa8kym36xcgcg8n4alnchk6kr8c479kmk6"; + name = "vakzination-22.11.tar.xz"; }; }; } diff --git a/third_party/nixpkgs/pkgs/applications/radio/ax25-tools/default.nix b/third_party/nixpkgs/pkgs/applications/radio/ax25-tools/default.nix new file mode 100644 index 0000000000..0e806c1107 --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/radio/ax25-tools/default.nix @@ -0,0 +1,29 @@ +{ lib +, stdenv +, fetchurl +, libax25 +}: + +stdenv.mkDerivation rec { + pname = "ax25-tools"; + version = "0.0.10-rc5"; + + buildInputs = [ libax25 ]; + + # Due to recent unsolvable administrative domain problems with linux-ax25.org, + # the new domain is linux-ax25.in-berlin.de + src = fetchurl { + url = "https://linux-ax25.in-berlin.de/pub/ax25-tools/ax25-tools-${version}.tar.gz"; + sha256 = "sha256-kqnLi1iobcufVWMPxUyaRsWKIPyTvtUkuMERGQs2qgY="; + }; + + configureFlags = [ "--sysconfdir=/etc" ]; + + meta = with lib; { + description = "Non-GUI tools used to configure an AX.25 enabled computer"; + homepage = "https://linux-ax25.in-berlin.de/wiki/Main_Page"; + license = licenses.lgpl21Only; + maintainers = with maintainers; [ sarcasticadmin ]; + platforms = platforms.linux; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/radio/dump1090/default.nix b/third_party/nixpkgs/pkgs/applications/radio/dump1090/default.nix index 7f42ddcf01..a67b48c840 100644 --- a/third_party/nixpkgs/pkgs/applications/radio/dump1090/default.nix +++ b/third_party/nixpkgs/pkgs/applications/radio/dump1090/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "dump1090"; - version = "7.1"; + version = "8.2"; src = fetchFromGitHub { owner = "flightaware"; repo = pname; rev = "v${version}"; - sha256 = "sha256-1fD8ZMkTS/r+p1rrOfJhH2sz3sJCapQcvk8f8crGApw="; + sha256 = "sha256-SUvK9XTXIDimEMEnORnp/Af/F030TZTxLI43Jzz31Js="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/applications/radio/freedv/default.nix b/third_party/nixpkgs/pkgs/applications/radio/freedv/default.nix index c7877f96e8..d6b4794e97 100644 --- a/third_party/nixpkgs/pkgs/applications/radio/freedv/default.nix +++ b/third_party/nixpkgs/pkgs/applications/radio/freedv/default.nix @@ -21,13 +21,13 @@ stdenv.mkDerivation rec { pname = "freedv"; - version = "1.8.5"; + version = "1.8.6"; src = fetchFromGitHub { owner = "drowe67"; repo = "freedv-gui"; rev = "v${version}"; - hash = "sha256-BkxEg4vQ943QyDo9V1hG2XimguGn8XpO9aIz5si0PKU="; + hash = "sha256-zzzRePBc09fK1ILoDto3EVz7IxJKePi39E18BrQedE0="; }; postPatch = lib.optionalString stdenv.isDarwin '' diff --git a/third_party/nixpkgs/pkgs/applications/radio/gnuradio/3.8.nix b/third_party/nixpkgs/pkgs/applications/radio/gnuradio/3.8.nix index 301193a657..1dbdbaa722 100644 --- a/third_party/nixpkgs/pkgs/applications/radio/gnuradio/3.8.nix +++ b/third_party/nixpkgs/pkgs/applications/radio/gnuradio/3.8.nix @@ -250,7 +250,7 @@ stdenv.mkDerivation rec { }) ]; passthru = shared.passthru // { - # Deps that are potentially overriden and are used inside GR plugins - the same version must + # Deps that are potentially overridden and are used inside GR plugins - the same version must inherit boost volk diff --git a/third_party/nixpkgs/pkgs/applications/radio/gnuradio/3.9.nix b/third_party/nixpkgs/pkgs/applications/radio/gnuradio/3.9.nix index e54c502060..baf86ca434 100644 --- a/third_party/nixpkgs/pkgs/applications/radio/gnuradio/3.9.nix +++ b/third_party/nixpkgs/pkgs/applications/radio/gnuradio/3.9.nix @@ -280,7 +280,7 @@ stdenv.mkDerivation rec { ./modtool-newmod-permissions.patch ]; passthru = shared.passthru // { - # Deps that are potentially overriden and are used inside GR plugins - the same version must + # Deps that are potentially overridden and are used inside GR plugins - the same version must inherit boost volk diff --git a/third_party/nixpkgs/pkgs/applications/radio/gnuradio/default.nix b/third_party/nixpkgs/pkgs/applications/radio/gnuradio/default.nix index 39aa9336ae..6ca669a8fe 100644 --- a/third_party/nixpkgs/pkgs/applications/radio/gnuradio/default.nix +++ b/third_party/nixpkgs/pkgs/applications/radio/gnuradio/default.nix @@ -48,13 +48,13 @@ , pname ? "gnuradio" , versionAttr ? { major = "3.10"; - minor = "4"; + minor = "5"; patch = "0"; } }: let - sourceSha256 = "sha256-Ov2NGiEj3mhqYwDYXWd6wcCAv78Ux2/LWyGjQ/ukQNk="; + sourceSha256 = "sha256-NP7OH4kRulWpWxyHudIzCJPfjiiilgnhBlixmwOj70I="; featuresInfo = { # Needed always basic = { @@ -299,7 +299,7 @@ stdenv.mkDerivation rec { ./modtool-newmod-permissions.patch ]; passthru = shared.passthru // { - # Deps that are potentially overriden and are used inside GR plugins - the same version must + # Deps that are potentially overridden and are used inside GR plugins - the same version must inherit boost volk diff --git a/third_party/nixpkgs/pkgs/applications/radio/gnuradio/shared.nix b/third_party/nixpkgs/pkgs/applications/radio/gnuradio/shared.nix index a5ae83eb35..ff6aaf35be 100644 --- a/third_party/nixpkgs/pkgs/applications/radio/gnuradio/shared.nix +++ b/third_party/nixpkgs/pkgs/applications/radio/gnuradio/shared.nix @@ -7,7 +7,7 @@ , features , versionAttr , sourceSha256 -# If overriden. No need to set default values, as they are given defaults in +# If overridden. No need to set default values, as they are given defaults in # the main expressions , overrideSrc , fetchFromGitHub diff --git a/third_party/nixpkgs/pkgs/applications/radio/limesuite/default.nix b/third_party/nixpkgs/pkgs/applications/radio/limesuite/default.nix index 3eafadce11..ed4c797fac 100644 --- a/third_party/nixpkgs/pkgs/applications/radio/limesuite/default.nix +++ b/third_party/nixpkgs/pkgs/applications/radio/limesuite/default.nix @@ -2,7 +2,8 @@ , sqlite, wxGTK32, libusb1, soapysdr , mesa_glu, libX11, gnuplot, fltk , GLUT -} : +, withGui ? true +}: stdenv.mkDerivation rec { pname = "limesuite"; @@ -19,20 +20,21 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DOpenGL_GL_PREFERENCE=GLVND" - ]; + ] ++ lib.optional (!withGui) "-DENABLE_GUI=OFF"; buildInputs = [ libusb1 sqlite - wxGTK32 - fltk gnuplot libusb1 soapysdr - mesa_glu - libX11 ] ++ lib.optionals stdenv.isDarwin [ GLUT + ] ++ lib.optionals withGui [ + fltk + libX11 + mesa_glu + wxGTK32 ]; postInstall = '' diff --git a/third_party/nixpkgs/pkgs/applications/radio/qradiolink/default.nix b/third_party/nixpkgs/pkgs/applications/radio/qradiolink/default.nix index 88cff17bc3..a0b7dd8c78 100644 --- a/third_party/nixpkgs/pkgs/applications/radio/qradiolink/default.nix +++ b/third_party/nixpkgs/pkgs/applications/radio/qradiolink/default.nix @@ -14,6 +14,7 @@ , libsndfile , libftdi , limesuite +, soapysdr-with-plugins , protobuf , speex , speexdsp @@ -23,13 +24,13 @@ gnuradio3_8.pkgs.mkDerivation rec { pname = "qradiolink"; - version = "0.8.7-1"; + version = "0.8.8-1"; src = fetchFromGitHub { owner = "qradiolink"; repo = "qradiolink"; rev = version; - sha256 = "sha256-4WkAEJvWu1+ZYDeipRl1oJWn5IR1nTXJ8We0trhbkQE="; + sha256 = "sha256-2M5TSTNbbH188GiKqjP+IfBqks379Fw0fiGLBNiaxEg="; }; preBuild = '' @@ -58,6 +59,7 @@ gnuradio3_8.pkgs.mkDerivation rec { libopus libjpeg limesuite + soapysdr-with-plugins speex speexdsp gnuradio3_8.qt.qtbase diff --git a/third_party/nixpkgs/pkgs/applications/radio/srsran/default.nix b/third_party/nixpkgs/pkgs/applications/radio/srsran/default.nix index 257de8b4c2..5bd408e255 100644 --- a/third_party/nixpkgs/pkgs/applications/radio/srsran/default.nix +++ b/third_party/nixpkgs/pkgs/applications/radio/srsran/default.nix @@ -17,13 +17,13 @@ stdenv.mkDerivation rec { pname = "srsran"; - version = "22.04.1"; + version = "22.10"; src = fetchFromGitHub { owner = "srsran"; repo = "srsran"; rev = "release_${builtins.replaceStrings ["."] ["_"] version}"; - sha256 = "sha256-jqaGlMhy6L6lRknl6Ezi0n+vNjMb7C+FN9a+QeOy/RY="; + sha256 = "sha256-O43MXJ6EyKXg7hA1WjW8TqLmAWC+h5RLBGzBO6f/0zo="; }; nativeBuildInputs = [ cmake pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/applications/science/astronomy/stellarium/default.nix b/third_party/nixpkgs/pkgs/applications/science/astronomy/stellarium/default.nix index 1b0f5abdf9..559c36ece8 100644 --- a/third_party/nixpkgs/pkgs/applications/science/astronomy/stellarium/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/astronomy/stellarium/default.nix @@ -21,13 +21,13 @@ stdenv.mkDerivation rec { pname = "stellarium"; - version = "1.1"; + version = "1.2"; src = fetchFromGitHub { owner = "Stellarium"; repo = "stellarium"; rev = "v${version}"; - sha256 = "sha256-ellfBZWOkvlRauuwug96C7P/WjQ6dXiDnT0b3KH5zRM="; + sha256 = "sha256-0/ZSe6QfM2zVsqcbyqefl9hiuex72KPxJvVMRNCnpZg="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/science/biology/ants/default.nix b/third_party/nixpkgs/pkgs/applications/science/biology/ants/default.nix index debd69733a..8a143d36a2 100644 --- a/third_party/nixpkgs/pkgs/applications/science/biology/ants/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/biology/ants/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, cmake, makeWrapper, itk-unstable, vtk_8, Cocoa }: +{ lib, stdenv, fetchFromGitHub, cmake, makeWrapper, itk, vtk_8, Cocoa }: stdenv.mkDerivation rec { pname = "ANTs"; @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ cmake makeWrapper ]; - buildInputs = [ itk-unstable vtk_8 ] ++ lib.optionals stdenv.isDarwin [ Cocoa ]; + buildInputs = [ itk vtk_8 ] ++ lib.optionals stdenv.isDarwin [ Cocoa ]; cmakeFlags = [ "-DANTS_SUPERBUILD=FALSE" "-DUSE_VTK=TRUE" ]; diff --git a/third_party/nixpkgs/pkgs/applications/science/biology/sratoolkit/default.nix b/third_party/nixpkgs/pkgs/applications/science/biology/sratoolkit/default.nix new file mode 100644 index 0000000000..8a1bb5376e --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/science/biology/sratoolkit/default.nix @@ -0,0 +1,56 @@ +{ stdenv +, lib +, fetchurl +, autoPatchelfHook +, libidn +, zlib +, bzip2 +}: + + +let + libidn11 = libidn.overrideAttrs (old: { + pname = "libidn"; + version = "1.34"; + src = fetchurl { + url = "mirror://gnu/libidn/libidn-1.34.tar.gz"; + sha256 = "0g3fzypp0xjcgr90c5cyj57apx1cmy0c6y9lvw2qdcigbyby469p"; + }; + }); + +in + +stdenv.mkDerivation rec { + pname = "sratoolkit"; + version = "2.11.3"; + + src = fetchurl { + url = "https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${version}/sratoolkit.${version}-ubuntu64.tar.gz"; + sha256 = "1590lc4cplxr3lhjqci8fjncy67imn2h14qd2l87chmhjh243qvx"; + }; + + nativeBuildInputs = [ + autoPatchelfHook + ]; + + buildInputs = [ + libidn11 + zlib + bzip2 + stdenv.cc.cc.lib + ]; + + sourceRoot = "./sratoolkit.${version}-ubuntu64/bin"; + + installPhase = '' + find -L . -executable -type f -! -name "*remote-fuser*" -exec install -m755 -D {} $out/bin/{} \; + ''; + + meta = with lib; { + homepage = "https://github.com/ncbi/sra-tools"; + description = "The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives."; + license = licenses.publicDomain; + maintainers = with maintainers; [ thyol ]; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/base.nix b/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/base.nix index 9183464268..d7250db07b 100644 --- a/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/base.nix +++ b/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/base.nix @@ -33,6 +33,7 @@ , dbus , at-spi2-core , libXtst +, pcre2 , swig4 , python @@ -67,6 +68,11 @@ stdenv.mkDerivation rec { src = kicadSrc; + patches = [ + # upstream issue 12941 (attempted to upstream, but appreciably unacceptable) + ./writable.patch + ]; + # tagged releases don't have "unknown" # kicad nightlies use git describe --dirty # nix removes .git, so its approximated here @@ -114,6 +120,9 @@ stdenv.mkDerivation rec { ] ++ optionals (!withPCM && stable) [ "-DKICAD_PCM=OFF" + ] + ++ optionals (!stable) [ # upstream issue 12491 + "-DCMAKE_CTEST_ARGUMENTS='--exclude-regex;qa_eeschema'" ]; nativeBuildInputs = [ @@ -136,6 +145,7 @@ stdenv.mkDerivation rec { dbus at-spi2-core libXtst + pcre2 ]; buildInputs = [ @@ -162,14 +172,10 @@ stdenv.mkDerivation rec { ++ optional (withScripting) wxPython ++ optional (withNgspice) libngspice ++ optional (withOCC) opencascade-occt - ++ optional (debug) valgrind - ; - - # started becoming necessary halfway into 2022, not sure what changed to break a test... - preInstallCheck = optionals (withNgspice) [ "export LD_LIBRARY_PATH=${libngspice}/lib" ]; + ++ optional (debug) valgrind; # debug builds fail all but the python test - doInstallCheck = !debug; + doInstallCheck = !(debug); installCheckTarget = "test"; dontStrip = debug; diff --git a/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/default.nix b/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/default.nix index 1540e3bdb6..6aeb63d671 100644 --- a/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/default.nix @@ -138,8 +138,7 @@ stdenv.mkDerivation rec { ++ optionals (withScripting) [ python.pkgs.wrapPython ]; - # We are emulating wrapGAppsHook, along with other variables to the - # wrapper + # We are emulating wrapGAppsHook, along with other variables to the wrapper makeWrapperArgs = with passthru.libraries; [ "--prefix XDG_DATA_DIRS : ${base}/share" "--prefix XDG_DATA_DIRS : ${hicolor-icon-theme}/share" @@ -231,5 +230,7 @@ stdenv.mkDerivation rec { # as long as the base and libraries (minus 3d) are build, # this wrapper does not need to get built # the kicad-*small "packages" cause this to happen + + mainProgram = "kicad"; }; } diff --git a/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/versions.nix b/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/versions.nix index 737a819e84..811a405853 100644 --- a/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/versions.nix +++ b/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/versions.nix @@ -3,45 +3,45 @@ { "kicad" = { kicadVersion = { - version = "6.0.9"; + version = "6.0.10"; src = { - rev = "8da3e8f7071484853b31c61cbd5045903b5c6dd3"; - sha256 = "1fr02jcy09v14d3k8ril0zhwnzhcqcf77wfj5b3bkrh6r8xraqhs"; + rev = "86aedd382b4ece39e27bef209e81792915103704"; + sha256 = "0pz8d96imc0q3nh7npr5zf0jkzi94wchvw57spcrgqfac9yrld3q"; }; }; libVersion = { - version = "6.0.9"; + version = "6.0.10"; libSources = { - symbols.rev = "0d9559dfddd51110e5c5223901ada2445285ce80"; - symbols.sha256 = "0y5mjjmmln37hkp9wmydinlfgrn8im8rn20145g9xgdpj8j38d48"; + symbols.rev = "3ec40517b37d78faf7ff5504c81362420c4b601f"; + symbols.sha256 = "1fwnr8x345jbifk71rhyd4b88c4ijp2rcw3pmivnwfb444hbr1lp"; templates.rev = "ae2b46f8756d79379b90fec01d4fdde1ccfd73c1"; templates.sha256 = "08zxh83fbygh1x2jhca8nrp3f9kihf7kmg65qmyp95wvps4p5h8v"; - footprints.rev = "6705da57c29e9896556c7cdbe719ede3f96e9121"; - footprints.sha256 = "02j445i0kcf87fhj9y6pwfcwq3arppxbrv77lbizm8kcpkpcfldl"; - packages3d.rev = "45df600c5e3dd5113d62e6445115e7c37bdf362f"; - packages3d.sha256 = "0cnrg7mr3khpglviid1adk2ihs1qwj0r7l32z2vqsl8aidzbg9kr"; + footprints.rev = "24671f7754c74dfa528e6b62ebef33b161aa4ab6"; + footprints.sha256 = "1rs05n1wjb2w3x7xqkkijbdxyw3fj0fph8znvnsxp9bgwaaipd4h"; + packages3d.rev = "417c4ea884a0d1501061f511730604890bbb0a35"; + packages3d.sha256 = "0nmvfchp25i4bkx6yf7fz1rwy7w6whj2w7mlp02ag3w5v4f137vz"; }; }; }; "kicad-unstable" = { kicadVersion = { - version = "2022-09-18"; + version = "2022-12-19"; src = { - rev = "0efc1149afed2af5b81e4555de4623217ece650f"; - sha256 = "19fqy8yvvl45izg5ynhch9r4gl4ncx0bz9s6n1x98bgzxkdyc14q"; + rev = "a3a2e2e5b1981ebfbb60f1e8e40bd02625d33692"; + sha256 = "1584n2gn68vdyzlm9805ln1bdgzf831j5l4v29z08dkbi2sl3rg0"; }; }; libVersion = { - version = "2022-09-18"; + version = "2022-12-19"; libSources = { - symbols.rev = "879023fba005d23f285b6d052d9e6bcba1d754aa"; - symbols.sha256 = "1nxz8r3h3j62fs3s77lj27333fsj5c4i01n05lv0gqx36h28hqxk"; + symbols.rev = "2fa69d6d1dce065f8d0998733f66d2cd7db31b9e"; + symbols.sha256 = "1kp8v0q1pirpi4v485j5bg72jpnxglbpgxjxda6kvq8d2124pwlb"; templates.rev = "ae2b46f8756d79379b90fec01d4fdde1ccfd73c1"; templates.sha256 = "08zxh83fbygh1x2jhca8nrp3f9kihf7kmg65qmyp95wvps4p5h8v"; - footprints.rev = "b1dfe894de90b0063befc02b914dc9e2b47e3a62"; - footprints.sha256 = "06kn6c00wlnr33mks582xhadvkbbgmqhb4qc1wjfw264pavz7v7y"; - packages3d.rev = "45df600c5e3dd5113d62e6445115e7c37bdf362f"; - packages3d.sha256 = "0cnrg7mr3khpglviid1adk2ihs1qwj0r7l32z2vqsl8aidzbg9kr"; + footprints.rev = "24671f7754c74dfa528e6b62ebef33b161aa4ab6"; + footprints.sha256 = "1rs05n1wjb2w3x7xqkkijbdxyw3fj0fph8znvnsxp9bgwaaipd4h"; + packages3d.rev = "7aeaa02a2e7438fbbe94a00ca321366a39dc1267"; + packages3d.sha256 = "13wfcm7fgsgl3a0g00ra3v35c8wqw9yzgdiai54f1m77r2cr7bhp"; }; }; }; diff --git a/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/writable.patch b/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/writable.patch new file mode 100644 index 0000000000..a2969f26f4 --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/science/electronics/kicad/writable.patch @@ -0,0 +1,49 @@ +commit 6a72fd032405515e468797be91b5a6ebcbbb5fd8 +Author: Evils +Date: Wed Nov 23 19:49:13 2022 +0100 + + ensure new projects are writable + +diff --git a/kicad/kicad_manager_frame.cpp b/kicad/kicad_manager_frame.cpp +index 7ee8090858..391514519c 100644 +--- a/kicad/kicad_manager_frame.cpp ++++ b/kicad/kicad_manager_frame.cpp +@@ -638,6 +638,12 @@ void KICAD_MANAGER_FRAME::CreateNewProject( const wxFileName& aProjectFileName, + + // wxFFile dtor will close the file + } ++ ++ if( destFileName.IsOk() && !destFileName.IsFileWritable() ) ++ { ++ destFileName.SetPermissions(0644); ++ } ++ + } + } + +diff --git a/kicad/project_template.cpp b/kicad/project_template.cpp +index bf951fcddb..2bef94326b 100644 +--- a/kicad/project_template.cpp ++++ b/kicad/project_template.cpp +@@ -282,6 +282,21 @@ bool PROJECT_TEMPLATE::CreateProject( wxFileName& aNewProjectPath, wxString* aEr + + result = false; + } ++ else if( !destFile.IsFileWritable() && !destFile.SetPermissions(0644) ) ++ { ++ if( aErrorMsg ) ++ { ++ if( !aErrorMsg->empty() ) ++ *aErrorMsg += "\n"; ++ ++ wxString msg; ++ ++ msg.Printf( _( "Cannot make file writable: '%s'." ), destFile.GetFullPath() ); ++ *aErrorMsg += msg; ++ } ++ ++ result = false; ++ } + } + + return result; diff --git a/third_party/nixpkgs/pkgs/applications/science/electronics/pulseview/default.nix b/third_party/nixpkgs/pkgs/applications/science/electronics/pulseview/default.nix index 68d4f80348..3bc4133a22 100644 --- a/third_party/nixpkgs/pkgs/applications/science/electronics/pulseview/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/electronics/pulseview/default.nix @@ -27,6 +27,11 @@ mkDerivation rec { url = "https://github.com/sigrokproject/pulseview/commit/fb89dd11f2a4a08b73c498869789e38677181a8d.patch"; sha256 = "07ifsis9jlc0jjp2d11f7hvw9kaxcbk0a57h2m4xsv1d7vzl9yfh"; }) + # Fixes replaced/obsolete Qt methods + (fetchpatch { + url = "https://github.com/sigrokproject/pulseview/commit/ae726b70a7ada9a4be5808e00f0c951318479684.patch"; + sha256 = "1rg8azin2b7gmp68bn3z398swqlg15ddyp4xynrz49wj44cgxsdv"; + }) ]; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/science/electronics/verilog/default.nix b/third_party/nixpkgs/pkgs/applications/science/electronics/verilog/default.nix index 0aa9091a86..4994a1db7b 100644 --- a/third_party/nixpkgs/pkgs/applications/science/electronics/verilog/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/electronics/verilog/default.nix @@ -12,11 +12,14 @@ }: let + # iverilog-test has been merged to the main iverilog main source tree + # in January 2022, so it won't be longer necessary. + # For now let's fetch it from the separate repo, since 11.0 was released in 2020. iverilog-test = fetchFromGitHub { owner = "steveicarus"; repo = "ivtest"; - rev = "253609b89576355b3bef2f91e90db62223ecf2be"; - sha256 = "18i7jlr2csp7mplcrwjhllwvb6w3v7x7mnx7vdw48nd3g5scrydx"; + rev = "a19e629a1879801ffcc6f2e6256ca435c20570f3"; + sha256 = "sha256-3EkmrAXU0/mRxrxp5Hy7C3yWTVK16L+tPqqeEryY/r8="; }; in stdenv.mkDerivation rec { @@ -38,10 +41,6 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; - # tests try to access /proc/ which does not exist on darwin - # Cannot locate IVL modules : couldn't get command path from OS. - doCheck = !stdenv.isDarwin; - installCheckInputs = [ perl ]; installCheckPhase = '' diff --git a/third_party/nixpkgs/pkgs/applications/science/electronics/vhd2vl/default.nix b/third_party/nixpkgs/pkgs/applications/science/electronics/vhd2vl/default.nix index 9fc65b7392..0ec14d282b 100644 --- a/third_party/nixpkgs/pkgs/applications/science/electronics/vhd2vl/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/electronics/vhd2vl/default.nix @@ -1,4 +1,5 @@ -{ lib, stdenv +{ lib +, stdenv , fetchFromGitHub , fetchpatch , bison @@ -9,24 +10,15 @@ stdenv.mkDerivation rec { pname = "vhd2vl"; - version = "unstable-2018-09-01"; + version = "unstable-2022-12-26"; src = fetchFromGitHub { owner = "ldoolitt"; repo = pname; - rev = "37e3143395ce4e7d2f2e301e12a538caf52b983c"; - sha256 = "17va2pil4938j8c93anhy45zzgnvq3k71a7glj02synfrsv6fs8n"; + rev = "869d442987dff6b9730bc90563ede89c1abfd28f"; + sha256 = "sha256-Hz2XkT5m4ri5wVR2ciL9Gx73zr+RdW5snjWnUg300c8="; }; - patches = lib.optionals (!stdenv.isAarch64) [ - # fix build with verilog 11.0 - https://github.com/ldoolitt/vhd2vl/pull/15 - # for some strange reason, this is not needed for aarch64 - (fetchpatch { - url = "https://github.com/ldoolitt/vhd2vl/commit/ce9b8343ffd004dfe8779a309f4b5a594dbec45e.patch"; - sha256 = "1qaqhm2mk66spb2dir9n91b385rarglc067js1g6pcg8mg5v3hhf"; - }) - ]; - nativeBuildInputs = [ bison flex diff --git a/third_party/nixpkgs/pkgs/applications/science/logic/coq/default.nix b/third_party/nixpkgs/pkgs/applications/science/logic/coq/default.nix index 82c2b0b614..f223763c9b 100644 --- a/third_party/nixpkgs/pkgs/applications/science/logic/coq/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/logic/coq/default.nix @@ -89,7 +89,7 @@ self = stdenv.mkDerivation { passthru = { inherit coq-version; - inherit ocamlPackages ocamlNativeNuildInputs; + inherit ocamlPackages ocamlNativeBuildInputs; inherit ocamlPropagatedBuildInputs ocamlPropagatedNativeBuildInputs; # For compatibility inherit (ocamlPackages) ocaml camlp5 findlib num ; diff --git a/third_party/nixpkgs/pkgs/applications/science/logic/cvc5/default.nix b/third_party/nixpkgs/pkgs/applications/science/logic/cvc5/default.nix index 1bd1c1c52b..5bce776771 100644 --- a/third_party/nixpkgs/pkgs/applications/science/logic/cvc5/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/logic/cvc5/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "cvc5"; - version = "1.0.2"; + version = "1.0.3"; src = fetchFromGitHub { owner = "cvc5"; repo = "cvc5"; rev = "cvc5-${version}"; - sha256 = "sha256-RDslPz9b0R9NXaXoixSCenHEh+F3wg/8p4Ksrzh41PI="; + sha256 = "sha256-CVXK6yehfUrSbo8R1Dk1oc/siCtmV9DjEp6q+aLuVQA="; }; nativeBuildInputs = [ pkg-config cmake ]; diff --git a/third_party/nixpkgs/pkgs/applications/science/logic/formula/nuget.nix b/third_party/nixpkgs/pkgs/applications/science/logic/formula/nuget.nix index 40b9abe7fa..e3b0fe6744 100644 --- a/third_party/nixpkgs/pkgs/applications/science/logic/formula/nuget.nix +++ b/third_party/nixpkgs/pkgs/applications/science/logic/formula/nuget.nix @@ -1,23 +1,30 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ (fetchNuGet { pname = "Antlr4.Runtime.Standard"; version = "4.7.2"; sha256 = "1pmrpsgqjfj0nzr1zqzk1m2fm0ynd4nklwq3dhvww08yjg5s0586"; }) - (fetchNuGet { pname = "coverlet.collector"; version = "3.0.2"; sha256 = "1xf6z6izmsl4g8w3z1wbp4pa8f8qsf6sil4mf1c9fb22hq8c5hkg"; }) - (fetchNuGet { pname = "Microsoft.Build.Framework"; version = "16.3.0"; sha256 = "1fdgymp11qpv4h152km2wmbykq1rb4b05cyy6d06naw01l61gdz8"; }) - (fetchNuGet { pname = "Microsoft.Build.Utilities.Core"; version = "16.3.0"; sha256 = "17hqjzxqnx2hhp276kdlc6wnhd33dilk0bd41px37and2icl9shn"; }) - (fetchNuGet { pname = "Microsoft.CodeCoverage"; version = "16.9.4"; sha256 = "11wiyy3ykgk1sa9amy3lgcsg2v7d1sz59ggw647vx8ibpjxijjpp"; }) - (fetchNuGet { pname = "Microsoft.CSharp"; version = "4.0.1"; sha256 = "0zxc0apx1gcx361jlq8smc9pfdgmyjh6hpka8dypc9w23nlsh6yj"; }) - (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "16.9.4"; sha256 = "1jdx05zmrqj1s7xfgn3wgy10qb5cl1n1jcj5kz43zvkw1amc7ra4"; }) - (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.0.1"; sha256 = "01al6cfxp68dscl15z7rxfw9zvhm64dncsw09a1vmdkacsa2v6lr"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) - (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.0.1"; sha256 = "0ppdkwy6s9p7x9jix3v4402wb171cdiibq7js7i13nxpdky7074p"; }) (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.1.0"; sha256 = "193xwf33fbm0ni3idxzbr5fdq3i2dlfgihsac9jj7whj0gd902nh"; }) - (fetchNuGet { pname = "Microsoft.TestPlatform.ObjectModel"; version = "16.9.4"; sha256 = "1jizkbrnm4pv60zch29ki7gj8m7j5whk141x9cwx4kwsd6cfzwi6"; }) - (fetchNuGet { pname = "Microsoft.TestPlatform.TestHost"; version = "16.9.4"; sha256 = "14110qzmypr72ywvx3npq7mf4n0gvdr4536v91z1xbapms65am6x"; }) (fetchNuGet { pname = "Microsoft.Win32.Primitives"; version = "4.3.0"; sha256 = "0j0c1wj4ndj21zsgivsc24whiya605603kxrbiw6wkfdync464wq"; }) - (fetchNuGet { pname = "Microsoft.Win32.Registry"; version = "4.3.0"; sha256 = "1gxyzxam8163vk1kb6xzxjj4iwspjsz9zhgn1w9rjzciphaz0ig7"; }) (fetchNuGet { pname = "Microsoft.Z3.x64"; version = "4.8.7"; sha256 = "1wxlw29xm5x8vwji2s7gwk39wb88dkbpg76l9s9gq0hqpghwlmdz"; }) (fetchNuGet { pname = "NETStandard.Library"; version = "1.6.1"; sha256 = "1z70wvsx2d847a2cjfii7b83pjfs34q05gb037fdjikv5kbagml8"; }) - (fetchNuGet { pname = "Newtonsoft.Json"; version = "9.0.1"; sha256 = "0mcy0i7pnfpqm4pcaiyzzji4g0c8i3a5gjz28rrr28110np8304r"; }) - (fetchNuGet { pname = "NuGet.Frameworks"; version = "5.0.0"; sha256 = "18ijvmj13cwjdrrm52c8fpq021531zaz4mj4b4zapxaqzzxf2qjr"; }) + (fetchNuGet { pname = "runtime.any.System.Collections"; version = "4.3.0"; sha256 = "0bv5qgm6vr47ynxqbnkc7i797fdi8gbjjxii173syrx14nmrkwg0"; }) + (fetchNuGet { pname = "runtime.any.System.Diagnostics.Tools"; version = "4.3.0"; sha256 = "1wl76vk12zhdh66vmagni66h5xbhgqq7zkdpgw21jhxhvlbcl8pk"; }) + (fetchNuGet { pname = "runtime.any.System.Diagnostics.Tracing"; version = "4.3.0"; sha256 = "00j6nv2xgmd3bi347k00m7wr542wjlig53rmj28pmw7ddcn97jbn"; }) + (fetchNuGet { pname = "runtime.any.System.Globalization"; version = "4.3.0"; sha256 = "1daqf33hssad94lamzg01y49xwndy2q97i2lrb7mgn28656qia1x"; }) + (fetchNuGet { pname = "runtime.any.System.Globalization.Calendars"; version = "4.3.0"; sha256 = "1ghhhk5psqxcg6w88sxkqrc35bxcz27zbqm2y5p5298pv3v7g201"; }) + (fetchNuGet { pname = "runtime.any.System.IO"; version = "4.3.0"; sha256 = "0l8xz8zn46w4d10bcn3l4yyn4vhb3lrj2zw8llvz7jk14k4zps5x"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection"; version = "4.3.0"; sha256 = "02c9h3y35pylc0zfq3wcsvc5nqci95nrkq0mszifc0sjx7xrzkly"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection.Extensions"; version = "4.3.0"; sha256 = "0zyri97dfc5vyaz9ba65hjj1zbcrzaffhsdlpxc9bh09wy22fq33"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection.Primitives"; version = "4.3.0"; sha256 = "0x1mm8c6iy8rlxm8w9vqw7gb7s1ljadrn049fmf70cyh42vdfhrf"; }) + (fetchNuGet { pname = "runtime.any.System.Resources.ResourceManager"; version = "4.3.0"; sha256 = "03kickal0iiby82wa5flar18kyv82s9s6d4xhk5h4bi5kfcyfjzl"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime"; version = "4.3.0"; sha256 = "1cqh1sv3h5j7ixyb7axxbdkqx6cxy00p4np4j91kpm492rf4s25b"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime.Handles"; version = "4.3.0"; sha256 = "0bh5bi25nk9w9xi8z23ws45q5yia6k7dg3i4axhfqlnj145l011x"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime.InteropServices"; version = "4.3.0"; sha256 = "0c3g3g3jmhlhw4klrc86ka9fjbl7i59ds1fadsb2l8nqf8z3kb19"; }) + (fetchNuGet { pname = "runtime.any.System.Text.Encoding"; version = "4.3.0"; sha256 = "0aqqi1v4wx51h51mk956y783wzags13wa7mgqyclacmsmpv02ps3"; }) + (fetchNuGet { pname = "runtime.any.System.Text.Encoding.Extensions"; version = "4.3.0"; sha256 = "0lqhgqi0i8194ryqq6v2gqx0fb86db2gqknbm0aq31wb378j7ip8"; }) + (fetchNuGet { pname = "runtime.any.System.Threading.Tasks"; version = "4.3.0"; sha256 = "03mnvkhskbzxddz4hm113zsch1jyzh2cs450dk3rgfjp8crlw1va"; }) + (fetchNuGet { pname = "runtime.any.System.Threading.Timer"; version = "4.3.0"; sha256 = "0aw4phrhwqz9m61r79vyfl5la64bjxj8l34qnrcwb28v49fg2086"; }) (fetchNuGet { pname = "runtime.debian.8-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "16rnxzpk5dpbbl1x354yrlsbvwylrq456xzpsha1n9y3glnhyx9d"; }) (fetchNuGet { pname = "runtime.fedora.23-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0hkg03sgm2wyq8nqk6dbm9jh5vcq57ry42lkqdmfklrw89lsmr59"; }) (fetchNuGet { pname = "runtime.fedora.24-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0c2p354hjx58xhhz7wv6div8xpi90sc6ibdm40qin21bvi7ymcaa"; }) @@ -34,69 +41,54 @@ (fetchNuGet { pname = "runtime.ubuntu.14.04-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "160p68l2c7cqmyqjwxydcvgw7lvl1cr0znkw8fp24d1by9mqc8p3"; }) (fetchNuGet { pname = "runtime.ubuntu.16.04-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "15zrc8fgd8zx28hdghcj5f5i34wf3l6bq5177075m2bc2j34jrqy"; }) (fetchNuGet { pname = "runtime.ubuntu.16.10-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "1p4dgxax6p7rlgj4q73k73rslcnz4wdcv8q2flg1s8ygwcm58ld5"; }) + (fetchNuGet { pname = "runtime.unix.Microsoft.Win32.Primitives"; version = "4.3.0"; sha256 = "0y61k9zbxhdi0glg154v30kkq7f8646nif8lnnxbvkjpakggd5id"; }) + (fetchNuGet { pname = "runtime.unix.System.Console"; version = "4.3.0"; sha256 = "1pfpkvc6x2if8zbdzg9rnc5fx51yllprl8zkm5npni2k50lisy80"; }) + (fetchNuGet { pname = "runtime.unix.System.Diagnostics.Debug"; version = "4.3.0"; sha256 = "1lps7fbnw34bnh3lm31gs5c0g0dh7548wfmb8zz62v0zqz71msj5"; }) + (fetchNuGet { pname = "runtime.unix.System.IO.FileSystem"; version = "4.3.0"; sha256 = "14nbkhvs7sji5r1saj2x8daz82rnf9kx28d3v2qss34qbr32dzix"; }) + (fetchNuGet { pname = "runtime.unix.System.Net.Primitives"; version = "4.3.0"; sha256 = "0bdnglg59pzx9394sy4ic66kmxhqp8q8bvmykdxcbs5mm0ipwwm4"; }) + (fetchNuGet { pname = "runtime.unix.System.Net.Sockets"; version = "4.3.0"; sha256 = "03npdxzy8gfv035bv1b9rz7c7hv0rxl5904wjz51if491mw0xy12"; }) + (fetchNuGet { pname = "runtime.unix.System.Private.Uri"; version = "4.3.0"; sha256 = "1jx02q6kiwlvfksq1q9qr17fj78y5v6mwsszav4qcz9z25d5g6vk"; 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version = "4.3.0"; sha256 = "0jvfn7j22l3mm28qjy3rcw287y9h65ha4m940waaxah07jnbzrhn"; }) (fetchNuGet { pname = "System.Security.Cryptography.Algorithms"; version = "4.3.0"; sha256 = "03sq183pfl5kp7gkvq77myv7kbpdnq3y0xj7vi4q1kaw54sny0ml"; }) (fetchNuGet { pname = "System.Security.Cryptography.Cng"; version = "4.3.0"; sha256 = "1k468aswafdgf56ab6yrn7649kfqx2wm9aslywjam1hdmk5yypmv"; }) (fetchNuGet { pname = "System.Security.Cryptography.Csp"; version = "4.3.0"; sha256 = "1x5wcrddf2s3hb8j78cry7yalca4lb5vfnkrysagbn6r9x6xvrx1"; }) @@ -104,31 +96,16 @@ (fetchNuGet { pname = "System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0givpvvj8yc7gv4lhb6s1prq6p2c4147204a0wib89inqzd87gqc"; }) (fetchNuGet { pname = "System.Security.Cryptography.Primitives"; version = "4.3.0"; sha256 = "0pyzncsv48zwly3lw4f2dayqswcfvdwq2nz0dgwmi7fj3pn64wby"; }) (fetchNuGet { pname = "System.Security.Cryptography.X509Certificates"; version = "4.3.0"; sha256 = "0valjcz5wksbvijylxijjxb1mp38mdhv03r533vnx1q3ikzdav9h"; 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}) ] diff --git a/third_party/nixpkgs/pkgs/applications/science/logic/monosat/default.nix b/third_party/nixpkgs/pkgs/applications/science/logic/monosat/default.nix index 2709b16c57..7295cdd30a 100644 --- a/third_party/nixpkgs/pkgs/applications/science/logic/monosat/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/logic/monosat/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchpatch, fetchFromGitHub, cmake, zlib, gmp, jdk8, - # The JDK we use on Darwin currenly makes extensive use of rpaths which are + # The JDK we use on Darwin currently makes extensive use of rpaths which are # annoying and break the python library, so let's not bother for now includeJava ? !stdenv.hostPlatform.isDarwin, includeGplCode ? true }: diff --git a/third_party/nixpkgs/pkgs/applications/science/logic/petrinizer/default.nix b/third_party/nixpkgs/pkgs/applications/science/logic/petrinizer/default.nix index 62d259f831..9fd20e3ed4 100644 --- a/third_party/nixpkgs/pkgs/applications/science/logic/petrinizer/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/logic/petrinizer/default.nix @@ -24,4 +24,8 @@ mkDerivation rec { license = lib.licenses.gpl3; maintainers = with lib.maintainers; [ raskin ]; inherit (sbv_7_13.meta) platforms; + + # dependency sbv no longer builds + hydraPlatforms = lib.platforms.none; + broken = true; } diff --git a/third_party/nixpkgs/pkgs/applications/science/machine-learning/streamlit/default.nix b/third_party/nixpkgs/pkgs/applications/science/machine-learning/streamlit/default.nix index 189c4cf97d..9479011d5f 100755 --- a/third_party/nixpkgs/pkgs/applications/science/machine-learning/streamlit/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/machine-learning/streamlit/default.nix @@ -26,12 +26,12 @@ buildPythonApplication rec { pname = "streamlit"; - version = "1.15.0"; + version = "1.16.0"; format = "wheel"; # source currently requires pipenv src = fetchPypi { inherit pname version format; - hash = "sha256-QtBr3INWBwCBab+FzmvzrjGjwVVHC8NCET9wtRVeVbc="; + hash = "sha256-TBNWIe3m646dbnOMxUltkNZr23g0Dqsestvxl4zHr4A="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/science/math/LiE/default.nix b/third_party/nixpkgs/pkgs/applications/science/math/LiE/default.nix index 9b16fc1d67..d05cc90ca4 100644 --- a/third_party/nixpkgs/pkgs/applications/science/math/LiE/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/math/LiE/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation { longDescription = '' LiE is a computer algebra system that is specialised in computations involving (reductive) Lie groups and their representations. It is - publically available for free in source code. For a description of its + publicly available for free in source code. For a description of its characteristics, we refer to the following sources of information. ''; # take from the website diff --git a/third_party/nixpkgs/pkgs/applications/science/math/R/default.nix b/third_party/nixpkgs/pkgs/applications/science/math/R/default.nix index 1c8c565528..83acfcfe9c 100644 --- a/third_party/nixpkgs/pkgs/applications/science/math/R/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/math/R/default.nix @@ -14,11 +14,11 @@ assert (!blas.isILP64) && (!lapack.isILP64); stdenv.mkDerivation rec { pname = "R"; - version = "4.2.1"; + version = "4.2.2"; src = fetchurl { url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz"; - sha256 = "sha256-TVLbSG0nhI5UYT1O6XetlS7AjOF4B+G1JbEM1ENsZD8="; + sha256 = "sha256-D/YrQuxRr6VxPK7nxP3noMRZQLo5vvjFyUh/7wyVPfU="; }; dontUseImakeConfigure = true; @@ -32,7 +32,6 @@ stdenv.mkDerivation rec { patches = [ ./no-usr-local-search-paths.patch - ./test-reg-packages.patch ]; # Test of the examples for package 'tcltk' fails in Darwin sandbox. See: diff --git a/third_party/nixpkgs/pkgs/applications/science/math/R/test-reg-packages.patch b/third_party/nixpkgs/pkgs/applications/science/math/R/test-reg-packages.patch deleted file mode 100644 index 0125565a79..0000000000 --- a/third_party/nixpkgs/pkgs/applications/science/math/R/test-reg-packages.patch +++ /dev/null @@ -1,15 +0,0 @@ -Upper bounds shifts due to extra warnings re. internet connectivity. - -diff --git a/tests/reg-packages.R b/tests/reg-packages.R -index c9962ce..a40b0fa 100644 ---- a/tests/reg-packages.R -+++ b/tests/reg-packages.R -@@ -260,7 +260,7 @@ stopifnot(exprs = { - (lenN <- length(print(iN <- grep("^[1-9][0-9]:", tlines)))) >= 2 - iN - iw == seq_len(lenN) # these (3) lines come immediately after 'Warning', - ## and "related" to the some 'missing .. paren' above: -- 8 <= print(iw - i) & iw - i <= 20 # see ~14 -+ 8 <= print(iw - i) & iw - i <= 22 # see ~14 - }) ## failed in R <= 4.1.1 - - diff --git a/third_party/nixpkgs/pkgs/applications/science/math/gap/default.nix b/third_party/nixpkgs/pkgs/applications/science/math/gap/default.nix index c65507228f..677e7d9a0d 100644 --- a/third_party/nixpkgs/pkgs/applications/science/math/gap/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/math/gap/default.nix @@ -66,11 +66,11 @@ in stdenv.mkDerivation rec { pname = "gap"; # https://www.gap-system.org/Releases/ - version = "4.12.1"; + version = "4.12.2"; src = fetchurl { url = "https://github.com/gap-system/gap/releases/download/v${version}/gap-${version}.tar.gz"; - sha256 = "sha256-+evvEe4xshDONuPHCWB0K04lMoK71ScK3JMkJzySsBY="; + sha256 = "sha256-ZyMIdF63iiIklO6N1nhu3VvDMUVvzGRWrAZL2yjVh6g="; }; # remove all non-essential packages (which take up a lot of space) diff --git a/third_party/nixpkgs/pkgs/applications/science/math/mathematica/default.nix b/third_party/nixpkgs/pkgs/applications/science/math/mathematica/default.nix index a3f6a83efa..e2526bdffa 100644 --- a/third_party/nixpkgs/pkgs/applications/science/math/mathematica/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/math/mathematica/default.nix @@ -5,6 +5,24 @@ , cudaSupport ? config.cudaSupport or false , lang ? "en" , version ? null +/* +If you wish to completely override the src, use: +my_mathematica = mathematica.override { + source = pkgs.requireFile { + name = "Mathematica_XX.X.X_BNDL_LINUX.sh"; + # Get this hash via a command similar to this: + # nix-store --query --hash \ + # $(nix store add-path Mathematica_XX.X.X_BNDL_LINUX.sh --name 'Mathematica_XX.X.X_BNDL_LINUX.sh') + sha256 = "0000000000000000000000000000000000000000000000000000"; + message = '' + Your override for Mathematica includes a different src for the installer, + and it is missing. + ''; + hashMode = "recursive"; + }; +} +*/ +, source ? null }: let versions = callPackage ./versions.nix { }; @@ -38,7 +56,8 @@ in callPackage real-drv { inherit cudaSupport cudaPackages; - inherit (found-version) version lang src; + inherit (found-version) version lang; + src = if source == null then found-version.src else source; name = ("mathematica" + lib.optionalString cudaSupport "-cuda" + "-${found-version.version}" diff --git a/third_party/nixpkgs/pkgs/applications/science/math/nasc/default.nix b/third_party/nixpkgs/pkgs/applications/science/math/nasc/default.nix index 927a71b9ef..f420c940f3 100644 --- a/third_party/nixpkgs/pkgs/applications/science/math/nasc/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/math/nasc/default.nix @@ -63,9 +63,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/science/math/polymake/default.nix b/third_party/nixpkgs/pkgs/applications/science/math/polymake/default.nix index 073275e410..0eecff0a17 100644 --- a/third_party/nixpkgs/pkgs/applications/science/math/polymake/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/math/polymake/default.nix @@ -1,7 +1,20 @@ -{ lib, stdenv, fetchurl -, perl, gmp, mpfr, flint, boost -, bliss, ppl, singular, cddlib, lrs, nauty -, ninja, ant, openjdk +{ lib +, stdenv +, fetchurl +, perl +, gmp +, mpfr +, flint +, boost +, bliss +, ppl +, singular +, cddlib +, lrs +, nauty +, ninja +, ant +, openjdk , perlPackages , makeWrapper }: @@ -12,27 +25,42 @@ stdenv.mkDerivation rec { pname = "polymake"; - version = "4.7"; + version = "4.8"; src = fetchurl { # "The minimal version is a packager friendly version which omits # the bundled sources of cdd, lrs, libnormaliz, nauty and jReality." url = "https://polymake.org/lib/exe/fetch.php/download/polymake-${version}-minimal.tar.bz2"; - sha256 = "sha256-1qv+3gIsbM1xHh02S3ybkcvVkKS3OZDNNWfJt2nybmE="; + sha256 = "sha256-GfsAypJBpHwpvoEl/IzJ1gQfeMcYwB7oNe01xWJ+86w="; }; + nativeBuildInputs = [ + makeWrapper + ninja + ant + perl + ]; + buildInputs = [ - perl gmp mpfr flint boost - bliss ppl singular cddlib lrs nauty + perl + gmp + mpfr + flint + boost + bliss + ppl + singular + cddlib + lrs + nauty openjdk ] ++ (with perlPackages; [ - JSON TermReadLineGnu TermReadKey XMLSAX + JSON + TermReadLineGnu + TermReadKey + XMLSAX ]); - nativeBuildInputs = [ - makeWrapper ninja ant perl - ]; - ninjaFlags = [ "-C" "build/Opt" ]; postInstall = '' @@ -43,9 +71,10 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Software for research in polyhedral geometry"; + homepage = "https://www.polymake.org/doku.php"; + changelog = "https://github.com/polymake/polymake/blob/V${version}/ChangeLog"; license = licenses.gpl2Plus; maintainers = teams.sage.members; platforms = platforms.linux; - homepage = "https://www.polymake.org/doku.php"; }; } diff --git a/third_party/nixpkgs/pkgs/applications/science/math/qalculate-gtk/default.nix b/third_party/nixpkgs/pkgs/applications/science/math/qalculate-gtk/default.nix index 204b3b7ba5..134b075ea1 100644 --- a/third_party/nixpkgs/pkgs/applications/science/math/qalculate-gtk/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/math/qalculate-gtk/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "qalculate-gtk"; - version = "4.4.0"; + version = "4.5.0"; src = fetchFromGitHub { owner = "qalculate"; repo = "qalculate-gtk"; rev = "v${version}"; - sha256 = "sha256-gXzGjELVcZ7LIOCu+Nub6K+zx8b6InkZk2NTfDHw8/E="; + sha256 = "sha256-NRoHmQw20NfZtZVzckh8eigJ4s2RUcQRb8w8fLh5yeQ="; }; hardeningDisable = [ "format" ]; diff --git a/third_party/nixpkgs/pkgs/applications/science/math/qalculate-qt/default.nix b/third_party/nixpkgs/pkgs/applications/science/math/qalculate-qt/default.nix index 6050438e1d..5571286d54 100644 --- a/third_party/nixpkgs/pkgs/applications/science/math/qalculate-qt/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/math/qalculate-qt/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "qalculate-qt"; - version = "4.4.0"; + version = "4.5.0"; src = fetchFromGitHub { owner = "qalculate"; repo = "qalculate-qt"; rev = "v${version}"; - sha256 = "sha256-C3alvl8hLxUy+soSjfxlNQ++QTcU9Gong1ydVpu8xGs="; + sha256 = "sha256-oUteOAtNjmYzHeIg4xdMAlMW/lLRV0DZCK1RqHVvYEQ="; }; nativeBuildInputs = [ qmake intltool pkg-config wrapQtAppsHook ]; diff --git a/third_party/nixpkgs/pkgs/applications/science/misc/root/default.nix b/third_party/nixpkgs/pkgs/applications/science/misc/root/default.nix index 12b181d2ed..f0924d1402 100644 --- a/third_party/nixpkgs/pkgs/applications/science/misc/root/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/misc/root/default.nix @@ -1,7 +1,7 @@ { stdenv , lib , callPackage -, fetchFromGitHub +, fetchurl , fetchpatch , makeWrapper , cmake @@ -48,6 +48,7 @@ , patchRcPathFish , patchRcPathPosix , tbb +, xrootd , Cocoa , CoreSymbolication , OpenGL @@ -70,20 +71,21 @@ in stdenv.mkDerivation rec { pname = "root"; - version = "6.26.08"; + version = "6.26.10"; passthru = { tests = import ./tests { inherit callPackage; }; }; - src = fetchFromGitHub { - owner = "root-project"; - repo = "root"; - rev = "v${builtins.replaceStrings [ "." ] [ "-" ] version}"; - sha256 = "sha256-cNd1GvEbO/a+WdDe8EHYGmdlw3TrOT2fWaSk+s7fw7U="; + src = fetchurl { + url = "https://root.cern.ch/download/root_v${version}.source.tar.gz"; + hash = "sha256-jla+w5cQQBeqVPnrVU3noaE0R0/gs7sPQ6cPxPq9Yl8="; }; nativeBuildInputs = [ makeWrapper cmake pkg-config git ]; + propagatedBuildInputs = [ + nlohmann_json + ]; buildInputs = [ davix ftgl @@ -107,12 +109,12 @@ stdenv.mkDerivation rec { libjpeg libtiff libpng - nlohmann_json patchRcPathCsh patchRcPathFish patchRcPathPosix python.pkgs.numpy tbb + xrootd ] ++ lib.optionals (!stdenv.isDarwin) [ libX11 libXpm libXft libXext libGLU libGL ] ++ lib.optionals (stdenv.isDarwin) [ Cocoa CoreSymbolication OpenGL ] @@ -195,7 +197,7 @@ stdenv.mkDerivation rec { "-Dvdt=OFF" "-Dwebgui=OFF" "-Dxml=ON" - "-Dxrootd=OFF" + "-Dxrootd=ON" ] ++ lib.optional (stdenv.cc.libc != null) "-DC_INCLUDE_DIRS=${lib.getDev stdenv.cc.libc}/include" ++ lib.optionals stdenv.isDarwin [ @@ -209,19 +211,23 @@ stdenv.mkDerivation rec { NIX_LDFLAGS = lib.optionalString (stdenv.isLinux && stdenv.isAarch64 && stdenv.cc.isGNU) "-lgcc"; + # Workaround the xrootd runpath bug #169677 by prefixing [DY]LD_LIBRARY_PATH with ${lib.makeLibraryPath xrootd}. + # TODO: Remove the [DY]LDLIBRARY_PATH prefix for xrootd when #200830 get merged. postInstall = '' for prog in rootbrowse rootcp rooteventselector rootls rootmkdir rootmv rootprint rootrm rootslimtree; do wrapProgram "$out/bin/$prog" \ --set PYTHONPATH "$out/lib" \ - --set ${lib.optionalString stdenv.isDarwin "DY"}LD_LIBRARY_PATH "$out/lib" + --set ${lib.optionalString stdenv.isDarwin "DY"}LD_LIBRARY_PATH "$out/lib:${lib.makeLibraryPath [ xrootd ]}" done - # Make ldd and sed available to the ROOT executable - wrapProgram "$out/bin/root" --prefix PATH : "${lib.makeBinPath [ - gnused # sed - stdenv.cc # c++ ld etc. - stdenv.cc.libc # ldd - ]}" + # Make ldd and sed available to the ROOT executable by prefixing PATH. + wrapProgram "$out/bin/root" \ + --prefix PATH : "${lib.makeBinPath [ + gnused # sed + stdenv.cc # c++ ld etc. + stdenv.cc.libc # ldd + ]}" \ + --prefix ${lib.optionalString stdenv.hostPlatform.isDarwin "DY"}LD_LIBRARY_PATH : "${lib.makeLibraryPath [ xrootd ]}" # Patch thisroot.{sh,csh,fish} diff --git a/third_party/nixpkgs/pkgs/applications/science/molecular-dynamics/lammps/default.nix b/third_party/nixpkgs/pkgs/applications/science/molecular-dynamics/lammps/default.nix index c377d96182..51280840a7 100644 --- a/third_party/nixpkgs/pkgs/applications/science/molecular-dynamics/lammps/default.nix +++ b/third_party/nixpkgs/pkgs/applications/science/molecular-dynamics/lammps/default.nix @@ -35,7 +35,7 @@ stdenv.mkDerivation rec { for pack in ${lib.concatStringsSep " " packages}; do make "yes-$pack" SHELL=$SHELL; done ''; - # Must do manual build due to LAMMPS requiring a seperate build for + # Must do manual build due to LAMMPS requiring a separate build for # the libraries and executable. Also non-typical make script buildPhase = '' make mode=exe ${if withMPI then "mpi" else "serial"} SHELL=$SHELL LMP_INC="${lammps_includes}" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng diff --git a/third_party/nixpkgs/pkgs/applications/search/recoll/default.nix b/third_party/nixpkgs/pkgs/applications/search/recoll/default.nix index 4117c8ac78..ee258373dc 100644 --- a/third_party/nixpkgs/pkgs/applications/search/recoll/default.nix +++ b/third_party/nixpkgs/pkgs/applications/search/recoll/default.nix @@ -35,11 +35,11 @@ mkDerivation rec { pname = "recoll"; - version = "1.32.7"; + version = "1.33.2"; src = fetchurl { url = "https://www.lesbonscomptes.com/${pname}/${pname}-${version}.tar.gz"; - sha256 = "sha256-ygim9LsLUZv5FaBiqbeq3E80NHPMHweJVwggjWYzfbo="; + sha256 = "sha256-ql4VHiblIn8uihUbF1htPnpvjw0qMxdzW8HLGlUrZW0="; }; configureFlags = [ "--enable-recollq" "--disable-webkit" "--without-systemd" ] diff --git a/third_party/nixpkgs/pkgs/applications/search/recoll/fix-datadir.patch b/third_party/nixpkgs/pkgs/applications/search/recoll/fix-datadir.patch index 3b316f4d90..7d5471b636 100644 --- a/third_party/nixpkgs/pkgs/applications/search/recoll/fix-datadir.patch +++ b/third_party/nixpkgs/pkgs/applications/search/recoll/fix-datadir.patch @@ -1,13 +1,13 @@ diff --git a/utils/rclutil.cpp b/utils/rclutil.cpp -index 60ff5fb..4a59ccc 100644 +index 6bafc119..d997cd17 100644 --- a/utils/rclutil.cpp +++ b/utils/rclutil.cpp @@ -279,7 +279,7 @@ const string& path_pkgdatadir() "a subfolder of the installation directory. \n" "Please set the RECOLL_DATADIR environment variable to point to it\n" "(e.g. setx RECOLL_DATADIR \"C:/Program Files (X86)/Recoll/Share)\"\n"; --#elif defined(__APPLE__) && !defined(MACPORTS) && !defined(HOMEBREW) -+#elif defined(__APPLE__) && !defined(MACPORTS) && !defined(HOMEBREW) && !defined(NIXPKGS) - uint32_t size = 0; - _NSGetExecutablePath(nullptr, &size); - char *path= (char*)malloc(size+1); +-#elif defined(__APPLE__) && defined(RECOLL_AS_MAC_BUNDLE) ++#elif defined(__APPLE__) && defined(RECOLL_AS_MAC_BUNDLE) && defined(NIXPKGS) + // The package manager builds (Macports, Homebrew, Nixpkgs ...) all arrange to set a proper + // compiled value for RECOLL_DATADIR. We can't do this when building a native bundle with + // QCreator, in which case we use the executable location. diff --git a/third_party/nixpkgs/pkgs/applications/system/booster/default.nix b/third_party/nixpkgs/pkgs/applications/system/booster/default.nix new file mode 100644 index 0000000000..dda41f2453 --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/system/booster/default.nix @@ -0,0 +1,58 @@ +{ bash +, binutils +, buildGoModule +, fetchFromGitHub +, kbd +, lib +, libfido2 +, lvm2 +, lz4 +, makeWrapper +, mdadm +, unixtools +, xz +, zfs +}: + +buildGoModule rec { + pname = "booster"; + version = "0.9"; + + src = fetchFromGitHub { + owner = "anatol"; + repo = pname; + rev = version; + hash = "sha256-kalVFVBb+ngoUpm+iiIHGS6vBVLEvTVyKuSMSMbp7Qc="; + }; + + vendorHash = "sha256-GD+nsT4/Y2mTF+ztOC3N560BY5+QSfsPrXZ+dJYtzAw="; + + postPatch = '' + substituteInPlace init/main.go --replace "/usr/bin/fsck" "${unixtools.fsck}/bin/fsck" + ''; + + # integration tests are run against the current kernel + doCheck = false; + + nativeBuildInputs = [ + kbd + lz4 + makeWrapper + xz + ]; + + postInstall = let + runtimeInputs = [ bash binutils kbd libfido2 lvm2 mdadm zfs ]; + in '' + wrapProgram $out/bin/generator --prefix PATH : ${lib.makeBinPath runtimeInputs} + wrapProgram $out/bin/init --prefix PATH : ${lib.makeBinPath runtimeInputs} + ''; + + meta = with lib; { + description = "Fast and secure initramfs generator "; + homepage = "https://github.com/anatol/booster"; + license = licenses.mit; + maintainers = with maintainers; [ urandom ]; + mainProgram = "init"; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/terminal-emulators/terminator/default.nix b/third_party/nixpkgs/pkgs/applications/terminal-emulators/terminator/default.nix index 0f1dd5ddd0..7cc1b23a60 100644 --- a/third_party/nixpkgs/pkgs/applications/terminal-emulators/terminator/default.nix +++ b/third_party/nixpkgs/pkgs/applications/terminal-emulators/terminator/default.nix @@ -14,13 +14,13 @@ python3.pkgs.buildPythonApplication rec { pname = "terminator"; - version = "2.1.1"; + version = "2.1.2"; src = fetchFromGitHub { owner = "gnome-terminator"; repo = "terminator"; rev = "v${version}"; - sha256 = "1pfrzna30xv9yri6dsny1j5k35417m4hsg97c455vssywyl9w4jr"; + hash = "sha256-dN9+6VGIdIyY52nm2BMONeb+WV7UGL68frjnHRxRzTU="; }; nativeBuildInputs = [ @@ -70,6 +70,7 @@ python3.pkgs.buildPythonApplication rec { quadkonsole, etc. in that the main focus is arranging terminals in grids (tabs is the most common default method, which Terminator also supports). ''; + changelog = "https://github.com/gnome-terminator/terminator/releases/tag/v${version}"; homepage = "https://github.com/gnome-terminator/terminator"; license = licenses.gpl2; maintainers = with maintainers; [ bjornfor ]; diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bfg-repo-cleaner/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/bfg-repo-cleaner/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bfg-repo-cleaner/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/bfg-repo-cleaner/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bit/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/bit/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bit/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/bit/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/Gemfile b/third_party/nixpkgs/pkgs/applications/version-management/bitbucket-server-cli/Gemfile similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/Gemfile rename to third_party/nixpkgs/pkgs/applications/version-management/bitbucket-server-cli/Gemfile diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/Gemfile.lock b/third_party/nixpkgs/pkgs/applications/version-management/bitbucket-server-cli/Gemfile.lock similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/Gemfile.lock rename to third_party/nixpkgs/pkgs/applications/version-management/bitbucket-server-cli/Gemfile.lock diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/bitbucket-server-cli/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/bitbucket-server-cli/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/gemset.nix b/third_party/nixpkgs/pkgs/applications/version-management/bitbucket-server-cli/gemset.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bitbucket-server-cli/gemset.nix rename to third_party/nixpkgs/pkgs/applications/version-management/bitbucket-server-cli/gemset.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bump2version/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/bump2version/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/bump2version/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/bump2version/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/cgit/common.nix b/third_party/nixpkgs/pkgs/applications/version-management/cgit/common.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/cgit/common.nix rename to third_party/nixpkgs/pkgs/applications/version-management/cgit/common.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/cgit/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/cgit/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/cgit/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/cgit/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/cgit/pink.nix b/third_party/nixpkgs/pkgs/applications/version-management/cgit/pink.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/cgit/pink.nix rename to third_party/nixpkgs/pkgs/applications/version-management/cgit/pink.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/commitizen/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/commitizen/default.nix index 3c0cf0ecec..b2b459589b 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/commitizen/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/commitizen/default.nix @@ -81,9 +81,7 @@ buildPythonApplication rec { "test_get_commits_with_signature" ]; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "Tool to create committing rules for projects, auto bump versions, and generate changelogs"; diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/conform/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/conform/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/conform/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/conform/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/darcs-to-git/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/darcs-to-git/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/darcs-to-git/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/darcs-to-git/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/delta/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/delta/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/delta/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/delta/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/diff-so-fancy/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/diff-so-fancy/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/diff-so-fancy/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/diff-so-fancy/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/fast-export/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/fast-export/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/fast-export/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/fast-export/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/forgejo/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/forgejo/default.nix new file mode 100644 index 0000000000..2cc8bb3c81 --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/version-management/forgejo/default.nix @@ -0,0 +1,25 @@ +{ fetchurl, gitea, lib }: + +gitea.overrideAttrs (old: rec { + pname = "forgejo"; + version = "1.18.0-rc1-1"; + + src = fetchurl { + name = "${pname}-src-${version}.tar.gz"; + # see https://codeberg.org/forgejo/forgejo/releases + url = "https://codeberg.org/attachments/976c426a-3e04-49ff-9762-47fab50624a3"; + hash = "sha256-kreBMHlMVB1UeG67zMbszGrgjaROateCRswH7GrKnEw="; + }; + + postInstall = old.postInstall or "" + '' + mv $out/bin/{${old.pname},${pname}} + ''; + + meta = with lib; { + description = "A self-hosted lightweight software forge"; + homepage = "https://forgejo.org"; + changelog = "https://codeberg.org/forgejo/forgejo/releases/tag/v${version}"; + license = licenses.mit; + maintainers = with maintainers; [ urandom ]; + }; +}) diff --git a/third_party/nixpkgs/pkgs/applications/version-management/fornalder/Cargo.lock b/third_party/nixpkgs/pkgs/applications/version-management/fornalder/Cargo.lock deleted file mode 100644 index 5f1cafc909..0000000000 --- a/third_party/nixpkgs/pkgs/applications/version-management/fornalder/Cargo.lock +++ /dev/null @@ -1,597 +0,0 @@ -# This file is automatically @generated by Cargo. -# It is not intended for manual editing. -version = 3 - -[[package]] -name = "addr2line" -version = "0.17.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b9ecd88a8c8378ca913a680cd98f0f13ac67383d35993f86c90a70e3f137816b" -dependencies = [ - "gimli", -] - 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"sha256-IPSxVWJs4EhyBdA1NXpD8v3fusewt1ELpn/kbZt7c5Q="; }; - cargoLock.lockFile = ./Cargo.lock; + cargoSha256 = "sha256-eK+oQbOQj8pKiOTXzIgRjzVB7Js8MMa9V6cF9D98Ftc="; - postPatch = '' - ln -s ${./Cargo.lock} Cargo.lock + nativeBuildInputs = [ makeWrapper ]; + + postInstall = '' + wrapProgram $out/bin/fornalder \ + --suffix PATH : ${lib.makeBinPath [ gnuplot ]} ''; - # tests don't typecheck - doCheck = false; - meta = with lib; { description = "Visualize long-term trends in collections of Git repositories"; homepage = "https://github.com/hpjansson/fornalder"; license = licenses.gpl3Only; - maintainers = with maintainers; [ astro ]; + maintainers = with maintainers; [ astro figsoda ]; }; } diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gex/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gex/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gex/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gex/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gfold/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gfold/default.nix similarity index 83% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gfold/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gfold/default.nix index 88fa12ae12..dcce6f7f3c 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gfold/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/gfold/default.nix @@ -12,7 +12,7 @@ let pname = "gfold"; - version = "4.0.1"; + version = "4.2.0"; in rustPlatform.buildRustPackage { inherit pname version; @@ -21,10 +21,10 @@ rustPlatform.buildRustPackage { owner = "nickgerace"; repo = pname; rev = version; - sha256 = "sha256-XOUXDuKLr8tESG2GJMl1kYsk2JRtQXzQyaO7d44Ajt8="; + sha256 = "sha256-cH4FhXrdT0ejpyt8G2rSGw9WE9sfOXRkSA9+FVwRmtQ="; }; - cargoSha256 = "sha256-jkktXVgHtqQeMU+rPiT4fz0kTIHW07RukxCnFABlzgw="; + cargoSha256 = "sha256-NmVmqBzRUdumWQ9MzolZTo0VQW9JTjIyYRwUTzGiQZ4="; buildInputs = lib.optionals stdenv.isDarwin [ libiconv Security ]; diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gg/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gg/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gg/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gg/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gh/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gh/default.nix similarity index 88% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gh/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gh/default.nix index 7d5a9cc6d6..6035c1d7eb 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gh/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/gh/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "gh"; - version = "2.20.2"; + version = "2.21.1"; src = fetchFromGitHub { owner = "cli"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-atUC6vb/tOO2GapMjTqFi4qjDAdSf2F8v3gZuzyt+9Q="; + sha256 = "sha256-DVdbyHGBnbFkKu0h01i0d1qw5OuBYydyP7qHc6B1qs0="; }; - vendorSha256 = "sha256-FSniCYr3emV9W/BuEkWe0a4aZ5RCoZJc7+K+f2q49ys="; + vendorSha256 = "sha256-b4pNcOfG+W+l2cqn4ncvR47zJltKYIcE3W1GvrWEOFY="; nativeBuildInputs = [ installShellFiles ]; diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/ghorg/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/ghorg/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/ghorg/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/ghorg/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/ghq/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/ghq/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/ghq/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/ghq/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/ghr/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/ghr/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/ghr/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/ghr/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-absorb/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-absorb/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-absorb/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-absorb/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-aggregator/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-aggregator/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-aggregator/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-aggregator/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitstats/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitstats/default.nix deleted file mode 100644 index 6cfcb00774..0000000000 --- a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitstats/default.nix +++ /dev/null @@ -1,44 +0,0 @@ -{ lib, stdenv, fetchFromGitHub, perl, python2, gnuplot, coreutils, gnugrep }: - -stdenv.mkDerivation rec { - pname = "gitstats"; - version = "2016-01-08"; - - # upstream does not make releases - src = fetchFromGitHub { - owner = "hoxu"; - repo = "gitstats"; - rev = "55c5c285558c410bb35ebf421245d320ab9ee9fa"; - sha256 = "sha256-qUQB3aCRbPkbMoMf39kPQ0vil8RjXL8RqjdTryfkzK0="; - }; - - nativeBuildInputs = [ perl ]; - - buildInputs = [ python2 ]; - - strictDeps = true; - - postPatch = '' - sed -e "s|gnuplot_cmd = .*|gnuplot_cmd = '${gnuplot}/bin/gnuplot'|" \ - -e "s|\|${coreutils}/bin/wc|g" \ - -e "s|\|${gnugrep}/bin/grep|g" \ - -i gitstats - ''; - - buildPhase = '' - make man VERSION="${version}" - ''; - - installPhase = '' - make install PREFIX="$out" VERSION="${version}" - install -Dm644 doc/gitstats.1 "$out"/share/man/man1/gitstats.1 - ''; - - meta = with lib; { - homepage = "http://gitstats.sourceforge.net/"; - description = "Git history statistics generator"; - license = licenses.gpl2Plus; - platforms = platforms.all; - maintainers = [ maintainers.bjornfor ]; - }; -} diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-annex-metadata-gui/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-annex-metadata-gui/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-annex-metadata-gui/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-annex-metadata-gui/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-annex-remote-dbx/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-annex-remote-dbx/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-annex-remote-dbx/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-annex-remote-dbx/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-annex-remote-googledrive/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-annex-remote-googledrive/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-annex-remote-googledrive/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-annex-remote-googledrive/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-annex-remote-rclone/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-annex-remote-rclone/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-annex-remote-rclone/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-annex-remote-rclone/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-annex-utils/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-annex-utils/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-annex-utils/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-annex-utils/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-appraise/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-appraise/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-appraise/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-appraise/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-backup/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-backup/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-backup/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-backup/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-big-picture/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-big-picture/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-branchless/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-branchless/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-branchless/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-branchless/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-branchstack/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-branchstack/default.nix new file mode 100644 index 0000000000..b536642cbf --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/version-management/git-branchstack/default.nix @@ -0,0 +1,26 @@ +{ lib +, fetchPypi +, buildPythonApplication +, git-revise +}: + +buildPythonApplication rec { + pname = "git-branchstack"; + version = "0.2.0"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-gja93LOcVCQ6l+Cygvsm+3uomvxtvUl6t23GIb/tKyQ="; + }; + + buildInputs = [ + git-revise + ]; + + meta = with lib; { + homepage = "https://github.com/krobelus/git-branchstack"; + description = "Efficiently manage Git branches without leaving your local branch"; + license = licenses.mit; + maintainers = [ maintainers.AndersonTorres ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-bug/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-bug/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-bug/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-bug/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-chglog/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-chglog/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-chglog/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-chglog/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-cinnabar/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-cinnabar/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-cinnabar/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-cinnabar/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-cliff/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-cliff/default.nix similarity index 59% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-cliff/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-cliff/default.nix index efc12299f9..c159d95fad 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-cliff/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/git-cliff/default.nix @@ -1,26 +1,34 @@ -{ lib, stdenv, fetchFromGitHub, rustPlatform, Security }: +{ lib +, stdenv +, fetchFromGitHub +, rustPlatform +, Security +}: rustPlatform.buildRustPackage rec { pname = "git-cliff"; - version = "0.10.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "orhun"; repo = "git-cliff"; rev = "v${version}"; - sha256 = "sha256-f7nM4airKOTXiYEMksTCm18BN036NQLLwNcKIlhuHWs="; + hash = "sha256-2EaPVNRcSiXN43iazK5MkZ8ytiALlnYRCH2gEtlqBW0="; }; - cargoSha256 = "sha256-wjqQAVQ1SCjD24aCwZorUhnfOKM+j9TkB84tLxeaNgo="; + cargoSha256 = "sha256-kWWg3Ul6SzULdW7oOmkz5Lm2FK1vF/TkggrZcNbIzck="; # attempts to run the program on .git in src which is not deterministic doCheck = false; - buildInputs = lib.optionals stdenv.isDarwin [ Security ]; + buildInputs = lib.optionals stdenv.isDarwin [ + Security + ]; meta = with lib; { description = "A highly customizable Changelog Generator that follows Conventional Commit specifications"; homepage = "https://github.com/orhun/git-cliff"; + changelog = "https://github.com/orhun/git-cliff/blob/v${version}/CHANGELOG.md"; license = licenses.gpl3Only; maintainers = with maintainers; [ siraben ]; }; diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-codeowners/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-codeowners/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-codeowners/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-codeowners/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-codereview/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-codereview/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-codereview/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-codereview/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-cola/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-cola/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-cola/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-cola/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-crecord/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-crecord/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-crecord/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-crecord/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-credential-1password/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-credential-1password/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-credential-1password/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-credential-1password/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-credential-keepassxc/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-credential-keepassxc/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-credential-keepassxc/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-credential-keepassxc/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-crypt/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-crypt/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-crypt/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-crypt/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-delete-merged-branches/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-delete-merged-branches/default.nix similarity index 88% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-delete-merged-branches/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-delete-merged-branches/default.nix index 7d3d1b6b2c..dc9b251537 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-delete-merged-branches/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/git-delete-merged-branches/default.nix @@ -2,13 +2,13 @@ python3Packages.buildPythonApplication rec { pname = "git-delete-merged-branches"; - version = "7.3.1"; + version = "7.4.0"; src = fetchFromGitHub { owner = "hartwork"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-9Y4n8OWZMwGoCunqwWtkDeDvRcJ4aepw1vgMXFHkhx0="; + sha256 = "sha256-17uFV3pjklqVW5ofeR54mgMh+q3uUCdqZG00Cc+4zFQ="; }; propagatedBuildInputs = with python3Packages; [ diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-extras/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-extras/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-extras/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-extras/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-fame/Gemfile b/third_party/nixpkgs/pkgs/applications/version-management/git-fame/Gemfile similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-fame/Gemfile rename to third_party/nixpkgs/pkgs/applications/version-management/git-fame/Gemfile diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-fame/Gemfile.lock b/third_party/nixpkgs/pkgs/applications/version-management/git-fame/Gemfile.lock similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-fame/Gemfile.lock rename to third_party/nixpkgs/pkgs/applications/version-management/git-fame/Gemfile.lock diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-fame/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-fame/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-fame/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-fame/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-fame/gemset.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-fame/gemset.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-fame/gemset.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-fame/gemset.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-fire/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-fire/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-fire/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-fire/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-ftp/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-ftp/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-ftp/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-ftp/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-gone/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-gone/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-gone/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-gone/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-hound/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-hound/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-hound/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-hound/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-hub/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-hub/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-hub/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-hub/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-ignore/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-ignore/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-ignore/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-ignore/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-imerge/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-imerge/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-imerge/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-imerge/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-interactive-rebase-tool/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-interactive-rebase-tool/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-interactive-rebase-tool/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-interactive-rebase-tool/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-lfs/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-lfs/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-lfs/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-lfs/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-machete/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-machete/default.nix similarity index 94% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-machete/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-machete/default.nix index a41380380b..9871cbe87a 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-machete/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/git-machete/default.nix @@ -36,9 +36,7 @@ buildPythonApplication rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-my/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-my/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-my/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-my/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-nomad/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-nomad/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-nomad/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-nomad/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-octopus/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-octopus/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-octopus/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-octopus/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-open/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-open/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-open/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-open/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-privacy/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-privacy/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-privacy/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-privacy/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-publish/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-publish/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-publish/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-publish/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-quick-stats/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-quick-stats/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-quick-stats/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-quick-stats/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-quickfix/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-quickfix/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-quickfix/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-quickfix/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-radar/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-radar/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-radar/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-radar/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-recent/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-recent/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-recent/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-recent/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-remote-codecommit/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-remote-codecommit/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-remote-codecommit/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-remote-codecommit/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-remote-gcrypt/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-remote-gcrypt/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-remote-gcrypt/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-remote-gcrypt/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-remote-hg/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-remote-hg/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-remote-hg/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-remote-hg/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-reparent/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-reparent/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-reparent/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-reparent/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-repo-updater/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-repo-updater/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-repo-updater/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-repo-updater/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-repo/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-repo/default.nix similarity index 95% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-repo/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-repo/default.nix index e47ea6b12d..69fb89604b 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-repo/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/git-repo/default.nix @@ -41,9 +41,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "gitRepo"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-repo/import-ssl-module.patch b/third_party/nixpkgs/pkgs/applications/version-management/git-repo/import-ssl-module.patch similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-repo/import-ssl-module.patch rename to third_party/nixpkgs/pkgs/applications/version-management/git-repo/import-ssl-module.patch diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-review/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-review/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-review/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-review/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-secret/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-secret/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-secret/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-secret/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-secrets/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-secrets/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-secrets/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-secrets/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-series/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-series/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-series/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-series/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-sizer/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-sizer/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-sizer/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-sizer/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-standup/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-standup/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-standup/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-standup/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-stree/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-stree/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-stree/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-stree/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-subrepo/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-subrepo/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-subrepo/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-subrepo/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-subset/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-subset/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-subset/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-subset/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-subtrac/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-subtrac/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-subtrac/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-subtrac/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-sync/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-sync/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-sync/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-sync/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-team/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-team/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-team/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-team/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-test/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-test/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-test/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-test/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-town/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-town/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-town/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-town/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-trim/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-trim/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-trim/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-trim/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-up/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-up/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-up/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-up/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-vanity-hash/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-vanity-hash/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-vanity-hash/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-vanity-hash/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-vendor/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-vendor/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-vendor/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-vendor/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-when-merged/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-when-merged/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-when-merged/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-when-merged/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-workspace/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git-workspace/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git-workspace/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git-workspace/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/docbook2texi.patch b/third_party/nixpkgs/pkgs/applications/version-management/git/docbook2texi.patch similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/docbook2texi.patch rename to third_party/nixpkgs/pkgs/applications/version-management/git/docbook2texi.patch diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/git-send-email-honor-PATH.patch b/third_party/nixpkgs/pkgs/applications/version-management/git/git-send-email-honor-PATH.patch similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/git-send-email-honor-PATH.patch rename to third_party/nixpkgs/pkgs/applications/version-management/git/git-send-email-honor-PATH.patch diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/git-sh-i18n.patch b/third_party/nixpkgs/pkgs/applications/version-management/git/git-sh-i18n.patch similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/git-sh-i18n.patch rename to third_party/nixpkgs/pkgs/applications/version-management/git/git-sh-i18n.patch diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/installCheck-path.patch b/third_party/nixpkgs/pkgs/applications/version-management/git/installCheck-path.patch similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/installCheck-path.patch rename to third_party/nixpkgs/pkgs/applications/version-management/git/installCheck-path.patch diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/ssh-path.patch b/third_party/nixpkgs/pkgs/applications/version-management/git/ssh-path.patch similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/ssh-path.patch rename to third_party/nixpkgs/pkgs/applications/version-management/git/ssh-path.patch diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/update.sh b/third_party/nixpkgs/pkgs/applications/version-management/git/update.sh similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git/update.sh rename to third_party/nixpkgs/pkgs/applications/version-management/git/update.sh diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git2cl/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/git2cl/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/git2cl/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/git2cl/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gita/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gita/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gita/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gita/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitbatch/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitbatch/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitbatch/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitbatch/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/gitea/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitea/default.nix index c0ce50d70d..aa394fb452 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/gitea/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/gitea/default.nix @@ -14,12 +14,12 @@ buildGoPackage rec { pname = "gitea"; - version = "1.17.3"; + version = "1.17.4"; # not fetching directly from the git repo, because that lacks several vendor files for the web UI src = fetchurl { url = "https://dl.gitea.io/gitea/${version}/gitea-src-${version}.tar.gz"; - sha256 = "sha256-NUkEgKt5OETo751UHcocPH7lEIgyBf6Rl/Nz0nbNH3g="; + sha256 = "sha256-koZEr89QhxCf2Dd/7SWiS/ZZoRIBfyu0mbxKknjXPK4="; }; patches = [ diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitflow/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitflow/default.nix similarity index 78% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitflow/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitflow/default.nix index ce612fcd52..09ab7031bd 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitflow/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/gitflow/default.nix @@ -1,6 +1,4 @@ -{ pkgs, lib, stdenv, fetchFromGitHub }: - -with pkgs.lib; +{ lib, stdenv, fetchFromGitHub, makeWrapper, getopt, git, coreutils }: stdenv.mkDerivation rec { pname = "gitflow"; @@ -13,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-kHirHG/bfsU6tKyQ0khNSTyChhzHfzib+HyA3LOtBI8="; }; - nativeBuildInputs = [ pkgs.makeWrapper ]; + nativeBuildInputs = [ makeWrapper ]; preBuild = '' makeFlagsArray+=(prefix="$out") @@ -21,9 +19,9 @@ stdenv.mkDerivation rec { postInstall = '' wrapProgram $out/bin/git-flow \ - --set FLAGS_GETOPT_CMD ${pkgs.getopt}/bin/getopt \ - --suffix PATH : ${pkgs.git}/bin \ - --prefix PATH : ${pkgs.coreutils}/bin + --set FLAGS_GETOPT_CMD ${getopt}/bin/getopt \ + --suffix PATH : ${git}/bin \ + --prefix PATH : ${coreutils}/bin ''; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/version-management/gitkraken/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitkraken/default.nix index bce2d3b7cf..196845bf52 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/gitkraken/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/gitkraken/default.nix @@ -10,24 +10,24 @@ with lib; let pname = "gitkraken"; - version = "8.9.1"; + version = "9.0.0"; throwSystem = throw "Unsupported system: ${stdenv.hostPlatform.system}"; srcs = { x86_64-linux = fetchzip { url = "https://release.axocdn.com/linux/GitKraken-v${version}.tar.gz"; - sha256 = "sha256-taz610BIAZm8TB2GQSHLjcDLVjfvtcyLqJ2XBaD6NRE="; + sha256 = "sha256-I6iIg+RBTz5HyommAvDuQBBURjMm04t31o5OZNCrYGc="; }; x86_64-darwin = fetchzip { url = "https://release.axocdn.com/darwin/GitKraken-v${version}.zip"; - sha256 = "sha256-TMcXtRO9ANQlmHPULgC/05qrqQC6oN58G3ytokRr/Z8="; + sha256 = "1dhswjzyjrfz4psjji53fjpvb8845lv44qqc6ncfv1ljx9ky828r"; }; aarch64-darwin = fetchzip { url = "https://release.axocdn.com/darwin-arm64/GitKraken-v${version}.zip"; - sha256 = "sha256-vuk0nfl+Ga5yiZWNwDd9o8qOjmiTLe5tQjGhia0bIk0="; + sha256 = "0jzcwx1z240rr08qc6vbasn51bcadz2jl3vm3jwgjpfdwypnsvk1"; }; }; diff --git a/third_party/nixpkgs/pkgs/applications/version-management/gitlab/data.json b/third_party/nixpkgs/pkgs/applications/version-management/gitlab/data.json index fe0bed84b5..6a9707dd41 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/gitlab/data.json +++ b/third_party/nixpkgs/pkgs/applications/version-management/gitlab/data.json @@ -1,15 +1,15 @@ { - "version": "15.6.1", - "repo_hash": "sha256-cdwfljmJvApU2q0pmWSmcMnHkQH4hfN7+cld5oP880g=", + "version": "15.6.2", + "repo_hash": "sha256-WMDst9BHjqK5UIYKzqJJnhrLPHxV0PmW+r8FGBueBs8=", "yarn_hash": "0lgl8rs9mlrwpzq75rywdbjbiib17wxvzlv1jibnx66iw1ym2rvh", "owner": "gitlab-org", "repo": "gitlab", - "rev": "v15.6.1-ee", + "rev": "v15.6.2-ee", "passthru": { - "GITALY_SERVER_VERSION": "15.6.1", + "GITALY_SERVER_VERSION": "15.6.2", "GITLAB_PAGES_VERSION": "1.63.0", "GITLAB_SHELL_VERSION": "14.13.0", - "GITLAB_WORKHORSE_VERSION": "15.6.1" + "GITLAB_WORKHORSE_VERSION": "15.6.2" }, "vendored_gems": [ "bundler-checksum", diff --git a/third_party/nixpkgs/pkgs/applications/version-management/gitlab/gitaly/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitlab/gitaly/default.nix index 14e9344b18..5f47a29cf1 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/gitlab/gitaly/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/gitlab/gitaly/default.nix @@ -11,7 +11,7 @@ let gemdir = ./.; }; - version = "15.6.1"; + version = "15.6.2"; package_version = "v${lib.versions.major version}"; gitaly_package = "gitlab.com/gitlab-org/gitaly/${package_version}"; @@ -22,7 +22,7 @@ let owner = "gitlab-org"; repo = "gitaly"; rev = "v${version}"; - sha256 = "sha256-mzX+6kMXqdrxqMaUwN2tG5kJgKSRv0/tNN8ibHqBbzU="; + sha256 = "sha256-or5Z96BCLFUC4r9bAZf9ytUOt4WozqwwuWGFuX2ix9k="; }; vendorSha256 = "sha256-SEPfso27PHHpvnQwdeMQYECw/CZIa/NdpMBSTRJEwIo="; diff --git a/third_party/nixpkgs/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix index be226c94f4..3cf201a9fe 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix @@ -5,7 +5,7 @@ in buildGoModule rec { pname = "gitlab-workhorse"; - version = "15.6.1"; + version = "15.6.2"; src = fetchFromGitLab { owner = data.owner; diff --git a/third_party/nixpkgs/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile b/third_party/nixpkgs/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile index cf08454a64..a2997bff4d 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile +++ b/third_party/nixpkgs/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile @@ -336,8 +336,7 @@ gem 'pg_query', '~> 2.2' gem 'premailer-rails', '~> 1.10.3' -# LabKit: Tracing and Correlation -gem 'gitlab-labkit', '~> 0.28.0' +gem 'gitlab-labkit', '~> 0.29.0' gem 'thrift', '>= 0.16.0' # I18n diff --git a/third_party/nixpkgs/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile.lock b/third_party/nixpkgs/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile.lock index 2174cec05f..c179654f21 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile.lock +++ b/third_party/nixpkgs/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile.lock @@ -575,7 +575,7 @@ GEM fog-json (~> 1.2.0) mime-types ms_rest_azure (~> 0.12.0) - gitlab-labkit (0.28.0) + gitlab-labkit (0.29.0) actionpack (>= 5.0.0, < 8.0.0) activesupport (>= 5.0.0, < 8.0.0) grpc (>= 1.37) @@ -1668,7 +1668,7 @@ DEPENDENCIES gitlab-dangerfiles (~> 3.6.2) gitlab-experiment (~> 0.7.1) gitlab-fog-azure-rm (~> 1.4.0) - gitlab-labkit (~> 0.28.0) + gitlab-labkit (~> 0.29.0) gitlab-license (~> 2.2.1) gitlab-mail_room (~> 0.0.9) gitlab-markup (~> 1.8.0) diff --git a/third_party/nixpkgs/pkgs/applications/version-management/gitlab/rubyEnv/gemset.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitlab/rubyEnv/gemset.nix index 54d4cfb85a..69ac4830af 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/gitlab/rubyEnv/gemset.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/gitlab/rubyEnv/gemset.nix @@ -2084,10 +2084,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0m2n5lvnm5nxn7bc6bqm3ycwk47kck6nl1c0s83pcvsn6qizbsx7"; + sha256 = "09xlv72nbys9a5iqvhxfzdr7vy3s3m2a6ixqb9vq71k925faq6gb"; type = "gem"; }; - version = "0.28.0"; + version = "0.29.0"; }; gitlab-license = { groups = ["default"]; diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitless/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitless/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitless/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitless/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitlint/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitlint/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitlint/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitlint/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitls/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitls/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitls/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitls/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitmux/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitmux/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitmux/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitmux/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitnuro/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitnuro/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitnuro/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitnuro/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitoxide/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitoxide/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitoxide/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitoxide/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitsign/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitsign/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitsign/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitsign/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/gitstats/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitstats/default.nix new file mode 100644 index 0000000000..d9eaae3ecb --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/version-management/gitstats/default.nix @@ -0,0 +1,66 @@ +{ lib +, stdenv +, fetchFromGitHub +, fetchpatch +, installShellFiles +, perl +, python3 +, gnuplot +, coreutils +, gnugrep +}: + +stdenv.mkDerivation rec { + pname = "gitstats"; + version = "2016-01-08"; + + # upstream does not make releases + src = fetchFromGitHub { + owner = "hoxu"; + repo = "gitstats"; + rev = "55c5c285558c410bb35ebf421245d320ab9ee9fa"; + sha256 = "sha256-qUQB3aCRbPkbMoMf39kPQ0vil8RjXL8RqjdTryfkzK0="; + }; + + patches = [ + # make gitstats compatible with python3 + # https://github.com/hoxu/gitstats/pull/105 + (fetchpatch { + name = "convert-gitstats-to-use-python3.patch"; + url = "https://github.com/hoxu/gitstats/commit/ca415668ce6b739ca9fefba6acd29c63b89f4211.patch"; + hash = "sha256-sgjoj8eQ5CxQBffmhqymsmXb8peuaSbfFoWciLK3LOo="; + }) + ]; + + nativeBuildInputs = [ installShellFiles perl ]; + + buildInputs = [ python3 ]; + + strictDeps = true; + + postPatch = '' + sed -e "s|gnuplot_cmd = .*|gnuplot_cmd = '${gnuplot}/bin/gnuplot'|" \ + -e "s|\|${coreutils}/bin/wc|g" \ + -e "s|\|${gnugrep}/bin/grep|g" \ + -i gitstats + ''; + + makeFlags = [ + "PREFIX=$(out)" + "VERSION=${version}" + ]; + + buildFlags = [ "man" ]; + + postInstall = '' + installManPage doc/gitstats.1 + ''; + + meta = with lib; { + homepage = "http://gitstats.sourceforge.net/"; + description = "Git history statistics generator"; + license = licenses.gpl2Plus; + platforms = platforms.all; + maintainers = with maintainers; [ bjornfor ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitstatus/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitstatus/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitstatus/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitstatus/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitstatus/romkatv_libgit2.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitstatus/romkatv_libgit2.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitstatus/romkatv_libgit2.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitstatus/romkatv_libgit2.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitty/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitty/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitty/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitty/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitui/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitui/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitui/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitui/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitweb/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gitweb/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gitweb/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gitweb/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/glab/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/glab/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/glab/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/glab/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/glitter/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/glitter/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/glitter/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/glitter/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/got/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/got/default.nix index 86813d7a6c..00b49f2957 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/got/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/got/default.nix @@ -46,7 +46,5 @@ stdenv.mkDerivation rec { license = licenses.isc; platforms = platforms.linux ++ platforms.darwin; maintainers = with maintainers; [ abbe afh ]; - # never built on x86_64-darwin since first introduction in nixpkgs - broken = stdenv.isDarwin && stdenv.isx86_64; }; } diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gst/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/gst/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/gst/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/gst/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/hub/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/hub/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/hub/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/hub/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/hut/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/hut/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/hut/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/hut/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/josh/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/josh/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/josh/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/josh/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/lab/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/lab/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/lab/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/lab/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/lefthook/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/lefthook/default.nix similarity index 84% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/lefthook/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/lefthook/default.nix index 38d6d740c8..ac4b7762c2 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/lefthook/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/lefthook/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "lefthook"; - version = "1.2.4"; + version = "1.2.6"; src = fetchFromGitHub { rev = "v${version}"; owner = "evilmartians"; repo = "lefthook"; - sha256 = "sha256-Z6j/Y8b9lq2nYS5Ki8iJoDsG3l5M6RylfDqQL7WrwNg="; + sha256 = "sha256-M15ESB8JCSryD6/+6N2EA6NUzLI4cwgAJUQC9UDNJrM="; }; - vendorSha256 = "sha256-sBcgt2YsV9RQhSjPN6N54tRk7nNvcOVhPEsEP+0Dtco="; + vendorSha256 = "sha256-KNegRQhVZMNDgcJZOgEei3oviDPM/RFwZbpoh38pxBw="; nativeBuildInputs = [ installShellFiles ]; diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/legit/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/legit/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/legit/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/legit/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/lucky-commit/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/lucky-commit/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/lucky-commit/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/lucky-commit/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/pass-git-helper/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/pass-git-helper/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/pass-git-helper/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/pass-git-helper/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/qgit/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/qgit/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/qgit/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/qgit/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/radicle-cli/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/radicle-cli/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/radicle-cli/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/radicle-cli/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/radicle-upstream/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/radicle-upstream/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/radicle-upstream/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/radicle-upstream/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/redmine/Gemfile b/third_party/nixpkgs/pkgs/applications/version-management/redmine/Gemfile index 7e5cf752bc..30bb8cc171 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/redmine/Gemfile +++ b/third_party/nixpkgs/pkgs/applications/version-management/redmine/Gemfile @@ -65,13 +65,14 @@ end group :test do gem "rails-dom-testing" - gem 'mocha', '>= 1.4.0' + gem 'mocha', (Gem.ruby_version < Gem::Version.new('2.7.0') ? ['>= 1.4.0', '< 2.0.0'] : '>= 1.4.0') gem 'simplecov', '~> 0.18.5', :require => false gem "ffi", platforms: [:mingw, :x64_mingw, :mswin] # For running system tests - gem 'puma' + # TODO: Remove version specification once Capybara supports Puma 6 + gem 'puma', '< 6.0.0' gem 'capybara', '~> 3.31.0' - gem "selenium-webdriver" + gem "selenium-webdriver", "~> 3.142.7" gem 'webdrivers', '~> 4.4', require: false # RuboCop gem 'rubocop', '~> 1.12.0' diff --git a/third_party/nixpkgs/pkgs/applications/version-management/redmine/Gemfile.lock b/third_party/nixpkgs/pkgs/applications/version-management/redmine/Gemfile.lock index c57844b49a..722205e17d 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/redmine/Gemfile.lock +++ b/third_party/nixpkgs/pkgs/applications/version-management/redmine/Gemfile.lock @@ -58,7 +58,7 @@ GEM rack-test (>= 0.6.3) regexp_parser (~> 1.5) xpath (~> 3.2) - childprocess (4.1.0) + childprocess (3.0.0) chunky_png (1.4.0) concurrent-ruby (1.1.10) crass (1.0.6) @@ -72,7 +72,7 @@ GEM htmlentities (4.3.4) i18n (1.8.11) concurrent-ruby (~> 1.0) - loofah (2.19.0) + loofah (2.19.1) crass (~> 1.0.2) nokogiri (>= 1.5.9) mail (2.7.1) @@ -83,21 +83,24 @@ GEM mini_mime (1.0.3) mini_portile2 (2.8.0) minitest (5.16.3) - mocha (1.15.0) + mocha (2.0.2) + ruby2_keywords (>= 0.0.5) mysql2 (0.5.4) net-ldap (0.17.1) nio4r (2.5.8) - nokogiri (1.13.8) + nokogiri (1.13.10) mini_portile2 (~> 2.8.0) racc (~> 1.4) + nokogiri (1.13.10-x86_64-linux) + racc (~> 1.4) parallel (1.22.1) - parser (3.1.2.1) + parser (3.1.3.0) ast (~> 2.4.1) pg (1.2.3) - public_suffix (5.0.0) + public_suffix (5.0.1) puma (5.6.5) nio4r (~> 2.0) - racc (1.6.0) + racc (1.6.1) rack (2.2.4) rack-openid (1.4.2) rack (>= 1.1.0) @@ -120,8 +123,8 @@ GEM rails-dom-testing (2.0.3) activesupport (>= 4.2.0) nokogiri (>= 1.6) - rails-html-sanitizer (1.4.3) - loofah (~> 2.3) + rails-html-sanitizer (1.4.4) + loofah (~> 2.19, >= 2.19.1) railties (5.2.8.1) actionpack (= 5.2.8.1) activesupport (= 5.2.8.1) @@ -145,7 +148,7 @@ GEM roadie-rails (2.2.0) railties (>= 5.1, < 6.2) roadie (>= 3.1, < 5.0) - rotp (6.2.0) + rotp (6.2.2) rouge (3.26.1) rqrcode (2.1.2) chunky_png (~> 1.0) @@ -160,7 +163,7 @@ GEM rubocop-ast (>= 1.2.0, < 2.0) ruby-progressbar (~> 1.7) unicode-display_width (>= 1.4.0, < 3.0) - rubocop-ast (1.21.0) + rubocop-ast (1.24.0) parser (>= 3.1.1.0) rubocop-performance (1.10.2) rubocop (>= 0.90.0, < 2.0) @@ -171,12 +174,11 @@ GEM rubocop (>= 0.90.0, < 2.0) ruby-openid (2.9.2) ruby-progressbar (1.11.0) + ruby2_keywords (0.0.5) rubyzip (2.3.2) - selenium-webdriver (4.5.0) - childprocess (>= 0.5, < 5.0) - rexml (~> 3.2, >= 3.2.5) - rubyzip (>= 1.2.2, < 3.0) - websocket (~> 1.0) + selenium-webdriver (3.142.7) + childprocess (>= 0.5, < 4.0) + rubyzip (>= 1.2.2) simplecov (0.18.5) docile (~> 1.1) simplecov-html (~> 0.11) @@ -198,7 +200,6 @@ GEM rubyzip (>= 1.3.0) selenium-webdriver (> 3.141, < 5.0) webrick (1.7.0) - websocket (1.2.9) websocket-driver (0.7.5) websocket-extensions (>= 0.1.0) websocket-extensions (0.1.5) @@ -227,7 +228,7 @@ DEPENDENCIES net-ldap (~> 0.17.0) nokogiri (~> 1.13.6) pg (~> 1.2.2) - puma + puma (< 6.0.0) rack-openid rails (= 5.2.8.1) rails-dom-testing @@ -243,7 +244,7 @@ DEPENDENCIES rubocop-rails (~> 2.9.0) ruby-openid (~> 2.9.2) rubyzip (~> 2.3.0) - selenium-webdriver + selenium-webdriver (~> 3.142.7) simplecov (~> 0.18.5) tzinfo-data webdrivers (~> 4.4) @@ -253,4 +254,4 @@ RUBY VERSION ruby 2.7.6p219 BUNDLED WITH - 2.3.9 + 2.3.26 diff --git a/third_party/nixpkgs/pkgs/applications/version-management/redmine/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/redmine/default.nix index 9da39ba4b1..d71b570b7d 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/redmine/default.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/redmine/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, fetchurl, bundlerEnv, ruby, makeWrapper, nixosTests }: let - version = "4.2.8"; + version = "4.2.9"; rubyEnv = bundlerEnv { name = "redmine-env-${version}"; @@ -16,7 +16,7 @@ in src = fetchurl { url = "https://www.redmine.org/releases/${pname}-${version}.tar.gz"; - sha256 = "sha256-C0McBS2P02uTIB2vrzYVzbjQNGDvzyQA59MmYrKrYnI="; + sha256 = "sha256-04dBNF9u/RDAeYmAk7JZ2NxNzY5B38T2RkloWueoyx4="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/third_party/nixpkgs/pkgs/applications/version-management/redmine/gemset.nix b/third_party/nixpkgs/pkgs/applications/version-management/redmine/gemset.nix index 5248ff3698..fa34afaa4d 100644 --- a/third_party/nixpkgs/pkgs/applications/version-management/redmine/gemset.nix +++ b/third_party/nixpkgs/pkgs/applications/version-management/redmine/gemset.nix @@ -166,10 +166,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1lvcp8bsd35g57f7wz4jigcw2sryzzwrpcgjwwf3chmjrjcww5in"; + sha256 = "1ic028k8xgm2dds9mqnvwwx3ibaz32j8455zxr9f4bcnviyahya5"; type = "gem"; }; - version = "4.1.0"; + version = "3.0.0"; }; chunky_png = { groups = ["default"]; @@ -280,10 +280,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1fpyk1965py77al7iadkn5dibwgvybknkr7r8bii2dj73wvr29rh"; + sha256 = "08qhzck271anrx9y6qa6mh8hwwdzsgwld8q0000rcd7yvvpnjr3c"; type = "gem"; }; - version = "2.19.0"; + version = "2.19.1"; }; mail = { dependencies = ["mini_mime"]; @@ -357,14 +357,15 @@ version = "5.16.3"; }; mocha = { + dependencies = ["ruby2_keywords"]; groups = ["test"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0z2nzk106b6af6n0d9xqf2sphaff4gpjgxvwqcmvy6k719hqhkh9"; + sha256 = "03bgnshh84hrw6f1sdj5srxnz0z50m0a7i93fa28fkbm52c2a1lg"; type = "gem"; }; - version = "1.15.0"; + version = "2.0.2"; }; mysql2 = { groups = ["default"]; @@ -410,10 +411,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0g7axlq2y6gzmixzzzhw3fn6nhrhg469jj8gfr7gs8igiclpkhkr"; + sha256 = "0n79k78c5vdcyl0m3y3l5x9kxl6xf5lgriwi2vd665qmdkr01vnk"; type = "gem"; }; - version = "1.13.8"; + version = "1.13.10"; }; parallel = { groups = ["default" "test"]; @@ -431,10 +432,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1q31n7yj59wka8xl8s5wkf66hm4pgvblx95czyxffprdnlhrir2p"; + sha256 = "17qfhjvnr9q2gp1gfdl6kndy2mb6qdwsls3vnjhb1h8ddimdm4s5"; type = "gem"; }; - version = "3.1.2.1"; + version = "3.1.3.0"; }; pg = { groups = ["default"]; @@ -459,10 +460,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0sqw1zls6227bgq38sxb2hs8nkdz4hn1zivs27mjbniswfy4zvi6"; + sha256 = "0hz0bx2qs2pwb0bwazzsah03ilpf3aai8b7lk7s35jsfzwbkjq35"; type = "gem"; }; - version = "5.0.0"; + version = "5.0.1"; }; puma = { dependencies = ["nio4r"]; @@ -480,10 +481,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0la56m0z26j3mfn1a9lf2l03qx1xifanndf9p3vx1azf6sqy7v9d"; + sha256 = "0p685i23lr8pl7l09g9l2mcj615fr7g33w3mkcr472lcg34nq8n8"; type = "gem"; }; - version = "1.6.0"; + version = "1.6.1"; }; rack = { groups = ["default" "openid" "test"]; @@ -545,10 +546,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1mj0b7ay10a2fgwj70kjw7mlyrp7a5la8lx8zmwhy40bkansdfrf"; + sha256 = "1mcb75qvldfz6zsr4inrfx7dmb0ngxy507awx28khqmnla3hqpc9"; type = "gem"; }; - version = "1.4.3"; + version = "1.4.4"; }; railties = { dependencies = ["actionpack" "activesupport" "method_source" "rake" "thor"]; @@ -670,10 +671,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "11q7rkjx40yi6lpylgl2jkpy162mjw7mswrcgcax86vgpbpjx6i3"; + sha256 = "10mmzc85y7andsich586ndykw678qn1ns2wpjxrg0sc0gr4w3pig"; type = "gem"; }; - version = "6.2.0"; + version = "6.2.2"; }; rouge = { groups = ["default"]; @@ -723,10 +724,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0s4m9h9hzrpfmsnswvfimafmjwfa79cbqh9dvq18cja32dhrhpcg"; + sha256 = "0sqkg84npyq9z4d3z46w59zyr1r1rbd1mrrlglws9ksw04wdq5x9"; type = "gem"; }; - version = "1.21.0"; + version = "1.24.0"; }; rubocop-performance = { dependencies = ["rubocop" "rubocop-ast"]; @@ -770,6 +771,16 @@ }; version = "1.11.0"; }; + ruby2_keywords = { + groups = ["default" "test"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1vz322p8n39hz3b4a9gkmz9y7a5jaz41zrm2ywf31dvkqm03glgz"; + type = "gem"; + }; + version = "0.0.5"; + }; rubyzip = { groups = ["default" "test"]; platforms = []; @@ -781,15 +792,15 @@ version = "2.3.2"; }; selenium-webdriver = { - dependencies = ["childprocess" "rexml" "rubyzip" "websocket"]; + dependencies = ["childprocess" "rubyzip"]; groups = ["test"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0fp7h5bnlqp649imgpnshgf3mxl8zwnpsl1ak1giii81r0cd6in3"; + sha256 = "0adcvp86dinaqq3nhf8p3m0rl2g6q0a4h52k0i7kdnsg1qz9k86y"; type = "gem"; }; - version = "4.5.0"; + version = "3.142.7"; }; simplecov = { dependencies = ["docile" "simplecov-html"]; @@ -896,16 +907,6 @@ }; version = "1.7.0"; }; - websocket = { - groups = ["default" "test"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0dib6p55sl606qb4vpwrvj5wh881kk4aqn2zpfapf8ckx7g14jw8"; - type = "gem"; - }; - version = "1.2.9"; - }; websocket-driver = { dependencies = ["websocket-extensions"]; groups = ["default"]; diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/rs-git-fsmonitor/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/rs-git-fsmonitor/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/rs-git-fsmonitor/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/rs-git-fsmonitor/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/scmpuff/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/scmpuff/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/scmpuff/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/scmpuff/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/stgit/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/stgit/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/stgit/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/stgit/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/subgit/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/subgit/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/subgit/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/subgit/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/svn-all-fast-export/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/svn-all-fast-export/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/svn-all-fast-export/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/svn-all-fast-export/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/svn2git/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/svn2git/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/svn2git/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/svn2git/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/thicket/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/thicket/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/thicket/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/thicket/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/tig/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/tig/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/tig/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/tig/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/topgit/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/topgit/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/topgit/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/topgit/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/transcrypt/default.nix b/third_party/nixpkgs/pkgs/applications/version-management/transcrypt/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/transcrypt/default.nix rename to third_party/nixpkgs/pkgs/applications/version-management/transcrypt/default.nix diff --git a/third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/transcrypt/helper-scripts_depspathprefix.patch b/third_party/nixpkgs/pkgs/applications/version-management/transcrypt/helper-scripts_depspathprefix.patch similarity index 100% rename from third_party/nixpkgs/pkgs/applications/version-management/git-and-tools/transcrypt/helper-scripts_depspathprefix.patch rename to third_party/nixpkgs/pkgs/applications/version-management/transcrypt/helper-scripts_depspathprefix.patch diff --git a/third_party/nixpkgs/pkgs/applications/video/celluloid/default.nix b/third_party/nixpkgs/pkgs/applications/video/celluloid/default.nix index fd9ef652db..90993a91e4 100644 --- a/third_party/nixpkgs/pkgs/applications/video/celluloid/default.nix +++ b/third_party/nixpkgs/pkgs/applications/video/celluloid/default.nix @@ -51,9 +51,7 @@ stdenv.mkDerivation rec { doCheck = true; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { homepage = "https://github.com/celluloid-player/celluloid"; diff --git a/third_party/nixpkgs/pkgs/applications/video/epgstation/update.nix b/third_party/nixpkgs/pkgs/applications/video/epgstation/update.nix index 41b7b9ab1e..4b9907384e 100644 --- a/third_party/nixpkgs/pkgs/applications/video/epgstation/update.nix +++ b/third_party/nixpkgs/pkgs/applications/video/epgstation/update.nix @@ -39,7 +39,7 @@ let # Fix issue with old sqlite3 version pinned that depends on very old node-gyp 3.x ${gnused}/bin/sed -i -e 's/"sqlite3":\s*"5.0.[0-9]\+"/"sqlite3": "5.0.11"/' package.json - # Regenerate node packages to update the pre-overriden epgstation derivation. + # Regenerate node packages to update the pre-overridden epgstation derivation. # This must come *after* package.json has been regenerated. pushd ../../../development/node-packages ./generate.sh diff --git a/third_party/nixpkgs/pkgs/applications/video/jftui/default.nix b/third_party/nixpkgs/pkgs/applications/video/jftui/default.nix index ec98a811e0..78d70d594a 100644 --- a/third_party/nixpkgs/pkgs/applications/video/jftui/default.nix +++ b/third_party/nixpkgs/pkgs/applications/video/jftui/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "jftui"; - version = "0.6.0"; + version = "0.6.1"; src = fetchFromGitHub { owner = "Aanok"; repo = pname; rev = "v${version}"; - sha256 = "sha256-UwR4IboLSjD/XXvSw1AhJubSxettvL/URhZ/Je6TWPQ="; + sha256 = "sha256-TkSnNZBnmDSMsxTFQx1OcFDLQBUqxIrFXQeeslXKqA0="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/video/kodi/unwrapped.nix b/third_party/nixpkgs/pkgs/applications/video/kodi/unwrapped.nix index 6eadd06af0..15bf50cc57 100644 --- a/third_party/nixpkgs/pkgs/applications/video/kodi/unwrapped.nix +++ b/third_party/nixpkgs/pkgs/applications/video/kodi/unwrapped.nix @@ -34,7 +34,7 @@ , buildPackages }: -assert usbSupport -> !udevSupport; # libusb-compat-0_1 won't be used if udev is avaliable +assert usbSupport -> !udevSupport; # libusb-compat-0_1 won't be used if udev is available assert gbmSupport || waylandSupport || x11Support; let diff --git a/third_party/nixpkgs/pkgs/applications/video/kooha/default.nix b/third_party/nixpkgs/pkgs/applications/video/kooha/default.nix index ba959ec571..91ead29833 100644 --- a/third_party/nixpkgs/pkgs/applications/video/kooha/default.nix +++ b/third_party/nixpkgs/pkgs/applications/video/kooha/default.nix @@ -20,19 +20,19 @@ stdenv.mkDerivation rec { pname = "kooha"; - version = "2.2.2"; + version = "2.2.3"; src = fetchFromGitHub { owner = "SeaDve"; repo = "Kooha"; rev = "v${version}"; - hash = "sha256-HgouIMbwpmR/K1hPU7QDzeEtyi5hC66huvInkJFLS2w="; + hash = "sha256-vLgBuP0DncBIb05R3484WozS+Nl+S7YBJUYek2CkJkQ="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-rdxD9pys11QcUtufcZ/zCrviytyc8hIXJfsXg2JoaKE="; + hash = "sha256-NPh603/5yZDUdTegAzFvjRn5tuzyrcNzbbKQr6NxXso="; }; nativeBuildInputs = [ @@ -66,7 +66,7 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - description = "Simple screen recorder"; + description = "Elegantly record your screen"; homepage = "https://github.com/SeaDve/Kooha"; license = licenses.gpl3Only; platforms = platforms.linux; diff --git a/third_party/nixpkgs/pkgs/applications/video/motion/default.nix b/third_party/nixpkgs/pkgs/applications/video/motion/default.nix index 73354644b5..ddec8efb6a 100644 --- a/third_party/nixpkgs/pkgs/applications/video/motion/default.nix +++ b/third_party/nixpkgs/pkgs/applications/video/motion/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "motion"; - version = "4.5.0"; + version = "4.5.1"; src = fetchFromGitHub { owner = "Motion-Project"; repo = "motion"; rev = "release-${version}"; - sha256 = "sha256-uKEgTQhpslOCfNj8z95/DK4M1Gx4SMRjl1/KPh5KHuc="; + sha256 = "sha256-3TmmLAU/muiI90hrYrctzgVbWS4rXjxzAa0ctVYKSSY="; }; nativeBuildInputs = [ autoreconfHook pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/applications/video/mpv/scripts/inhibit-gnome.nix b/third_party/nixpkgs/pkgs/applications/video/mpv/scripts/inhibit-gnome.nix new file mode 100644 index 0000000000..2955dfb7c0 --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/video/mpv/scripts/inhibit-gnome.nix @@ -0,0 +1,31 @@ +{ lib, stdenv, fetchFromGitHub, pkg-config, dbus, mpv-unwrapped }: + +stdenv.mkDerivation rec { + pname = "mpv-inhibit-gnome"; + version = "0.1.3"; + + src = fetchFromGitHub { + owner = "Guldoman"; + repo = "mpv_inhibit_gnome"; + rev = "v${version}"; + hash = "sha256-LSGg5gAQE2JpepBqhz6D6d3NlqYaU4bjvYf1F+oLphQ="; + }; + + nativeBuildInputs = [ pkg-config ]; + + buildInputs = [ dbus mpv-unwrapped ]; + + passthru.scriptName = "mpv_inhibit_gnome.so"; + + installPhase = '' + install -D ./lib/mpv_inhibit_gnome.so $out/share/mpv/scripts/mpv_inhibit_gnome.so + ''; + + meta = with lib; { + description = "This mpv plugin prevents screen blanking in GNOME"; + homepage = "https://github.com/Guldoman/mpv_inhibit_gnome"; + license = licenses.mit; + platforms = platforms.linux; + maintainers = with maintainers; [ myaats ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/video/mpv/scripts/sponsorblock.nix b/third_party/nixpkgs/pkgs/applications/video/mpv/scripts/sponsorblock.nix index b43ce6afdf..0c46b4c2ba 100644 --- a/third_party/nixpkgs/pkgs/applications/video/mpv/scripts/sponsorblock.nix +++ b/third_party/nixpkgs/pkgs/applications/video/mpv/scripts/sponsorblock.nix @@ -42,7 +42,6 @@ stdenvNoCC.mkDerivation { passthru = { scriptName = "sponsorblock.lua"; updateScript = nix-update-script { - attrPath = "mpvScripts.sponsorblock"; extraArgs = [ "--version=branch" ]; }; }; diff --git a/third_party/nixpkgs/pkgs/applications/video/netflix/default.nix b/third_party/nixpkgs/pkgs/applications/video/netflix/default.nix index 4f44ddebae..8c50e027c0 100644 --- a/third_party/nixpkgs/pkgs/applications/video/netflix/default.nix +++ b/third_party/nixpkgs/pkgs/applications/video/netflix/default.nix @@ -5,6 +5,9 @@ , runtimeShell , symlinkJoin , writeScriptBin + + # command line arguments which are always set e.g "--disable-gpu" +, commandLineArgs ? [ ] }: let @@ -43,9 +46,12 @@ let script = writeScriptBin name '' #!${runtimeShell} - exec ${google-chrome}/bin/${google-chrome.meta.mainProgram} \ + exec ${google-chrome}/bin/${google-chrome.meta.mainProgram} ${lib.escapeShellArgs commandLineArgs} \ --app=https://netflix.com \ - --no-first-run --no-default-browser-check --no-crash-upload + --no-first-run \ + --no-default-browser-check \ + --no-crash-upload \ + "$@" ''; in diff --git a/third_party/nixpkgs/pkgs/applications/video/openshot-qt/libopenshot-audio.nix b/third_party/nixpkgs/pkgs/applications/video/openshot-qt/libopenshot-audio.nix index bf77e8a8f0..438eae4670 100644 --- a/third_party/nixpkgs/pkgs/applications/video/openshot-qt/libopenshot-audio.nix +++ b/third_party/nixpkgs/pkgs/applications/video/openshot-qt/libopenshot-audio.nix @@ -1,6 +1,7 @@ { lib , stdenv , fetchFromGitHub +, fetchpatch , alsa-lib , cmake , doxygen @@ -28,6 +29,11 @@ stdenv.mkDerivation rec { sha256 = "sha256-XtwTZsj/L/sw/28E7Qr5UyghGlBFFXvbmZLGXBB8vg0="; }; + patches = [ + # https://forum.juce.com/t/juce-and-macos-11-arm/40285/24 + ./undef-fpret-on-aarch64-darwin.patch + ]; + nativeBuildInputs = [ cmake doxygen @@ -63,7 +69,5 @@ stdenv.mkDerivation rec { license = with licenses; gpl3Plus; maintainers = with maintainers; [ AndersonTorres ]; platforms = with platforms; unix; - # never built on aarch64-darwin since first introduction in nixpkgs - broken = stdenv.isDarwin && stdenv.isAarch64; }; } diff --git a/third_party/nixpkgs/pkgs/applications/video/openshot-qt/libopenshot.nix b/third_party/nixpkgs/pkgs/applications/video/openshot-qt/libopenshot.nix index 8a98010ef6..22ed82fd3d 100644 --- a/third_party/nixpkgs/pkgs/applications/video/openshot-qt/libopenshot.nix +++ b/third_party/nixpkgs/pkgs/applications/video/openshot-qt/libopenshot.nix @@ -35,8 +35,9 @@ stdenv.mkDerivation rec { export _REL_PYTHON_MODULE_PATH=$(toPythonPath $out) ''; - nativeBuildInputs = [ + nativeBuildInputs = lib.optionals stdenv.isLinux [ alsa-lib + ] ++ [ cmake doxygen pkg-config diff --git a/third_party/nixpkgs/pkgs/applications/video/openshot-qt/undef-fpret-on-aarch64-darwin.patch b/third_party/nixpkgs/pkgs/applications/video/openshot-qt/undef-fpret-on-aarch64-darwin.patch new file mode 100644 index 0000000000..c391f77dda --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/video/openshot-qt/undef-fpret-on-aarch64-darwin.patch @@ -0,0 +1,13 @@ +diff --git a/JuceLibraryCode/modules/juce_core/native/juce_osx_ObjCHelpers.h b/JuceLibraryCode/modules/juce_core/native/juce_osx_ObjCHelpers.h +index 2593790..0b5983d 100644 +--- a/JuceLibraryCode/modules/juce_core/native/juce_osx_ObjCHelpers.h ++++ b/JuceLibraryCode/modules/juce_core/native/juce_osx_ObjCHelpers.h +@@ -209,7 +209,7 @@ static inline ReturnValue ObjCMsgSendSuper (struct objc_super* s, SEL sel, Param + typedef id (*MsgSendSuperFn) (struct objc_super*, SEL, ...); + static inline MsgSendSuperFn getMsgSendSuperFn() noexcept { return (MsgSendSuperFn) (void*) objc_msgSendSuper; } + +-#if ! JUCE_IOS ++#if JUCE_INTEL && ! JUCE_IOS + typedef double (*MsgSendFPRetFn) (id, SEL op, ...); + static inline MsgSendFPRetFn getMsgSendFPRetFn() noexcept { return (MsgSendFPRetFn) (void*) objc_msgSend_fpret; } + #endif diff --git a/third_party/nixpkgs/pkgs/applications/video/peek/default.nix b/third_party/nixpkgs/pkgs/applications/video/peek/default.nix index c39363ee36..f2b5f6c504 100644 --- a/third_party/nixpkgs/pkgs/applications/video/peek/default.nix +++ b/third_party/nixpkgs/pkgs/applications/video/peek/default.nix @@ -79,9 +79,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; diff --git a/third_party/nixpkgs/pkgs/applications/video/vdr/default.nix b/third_party/nixpkgs/pkgs/applications/video/vdr/default.nix index 68750ac918..352b35cc1e 100644 --- a/third_party/nixpkgs/pkgs/applications/video/vdr/default.nix +++ b/third_party/nixpkgs/pkgs/applications/video/vdr/default.nix @@ -5,12 +5,12 @@ }: stdenv.mkDerivation rec { pname = "vdr"; - version = "2.6.1"; + version = "2.6.3"; src = fetchgit { url = "git://git.tvdr.de/vdr.git"; rev = version; - sha256 = "sha256-jKuvh1OruPXTBlgLwlwcJdqC8u0WBDr/Un5JUL3U0hw="; + sha256 = "sha256-SDaNk8tDaO70+V7sozMGTCzpnOqa52xdEQPURkyuTt8="; }; enableParallelBuilding = true; diff --git a/third_party/nixpkgs/pkgs/applications/virtualization/colima/default.nix b/third_party/nixpkgs/pkgs/applications/virtualization/colima/default.nix index d19a764e4e..d13cfbd7f1 100644 --- a/third_party/nixpkgs/pkgs/applications/virtualization/colima/default.nix +++ b/third_party/nixpkgs/pkgs/applications/virtualization/colima/default.nix @@ -11,13 +11,13 @@ buildGoModule rec { pname = "colima"; - version = "0.4.6"; + version = "0.5.2"; src = fetchFromGitHub { owner = "abiosoft"; repo = pname; rev = "v${version}"; - sha256 = "sha256-mVEp/4iL23rrw6HSl/7qMGK4YCJ6I+9gcSIhyPsAWzc="; + sha256 = "sha256-xw+Yy9KejVkunOLJdmfXstP7aDrl3j0OZjCaf6pyL1U="; # We need the git revision leaveDotGit = true; postFetch = '' @@ -28,7 +28,7 @@ buildGoModule rec { nativeBuildInputs = [ installShellFiles makeWrapper ]; - vendorSha256 = "sha256-tsMQMWEkTE1NhevcqBETGWiboqL6QTepgnIo4B5Y4wQ="; + vendorSha256 = "sha256-Iz1LYL25NpkztTM86zrLwehub8FzO1IlwZqCPW7wDN4="; CGO_ENABLED = 1; diff --git a/third_party/nixpkgs/pkgs/applications/virtualization/containerd/default.nix b/third_party/nixpkgs/pkgs/applications/virtualization/containerd/default.nix index c84ba7a6c4..7a16489c04 100644 --- a/third_party/nixpkgs/pkgs/applications/virtualization/containerd/default.nix +++ b/third_party/nixpkgs/pkgs/applications/virtualization/containerd/default.nix @@ -10,13 +10,13 @@ buildGoModule rec { pname = "containerd"; - version = "1.6.12"; + version = "1.6.14"; src = fetchFromGitHub { owner = "containerd"; repo = "containerd"; rev = "v${version}"; - sha256 = "sha256-02eg2RNEim47Q3TyTLYc0IdaBJcOf89qTab8GV8fDgA="; + sha256 = "sha256-+2K2lLxTXZS8pjgqhJZd+JovUFqG5Cgw9iAbDjnUvvQ="; }; vendorSha256 = null; diff --git a/third_party/nixpkgs/pkgs/applications/virtualization/docker/compose.nix b/third_party/nixpkgs/pkgs/applications/virtualization/docker/compose.nix index e3a9ddbbf1..467a235dc8 100644 --- a/third_party/nixpkgs/pkgs/applications/virtualization/docker/compose.nix +++ b/third_party/nixpkgs/pkgs/applications/virtualization/docker/compose.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "docker-compose"; - version = "2.14.1"; + version = "2.14.2"; src = fetchFromGitHub { owner = "docker"; repo = "compose"; rev = "v${version}"; - sha256 = "sha256-FxioqEPVHI6PlKfcQlKbPVj6LGyUsXabCpJh+zY3gco="; + sha256 = "sha256-Yr4R2w6tUsir57etZeex2jT1PW3EZvsLJkVAo/QkhUA="; }; postPatch = '' @@ -16,7 +16,7 @@ buildGoModule rec { rm -rf e2e/ ''; - vendorSha256 = "sha256-sWEtpwtr2/2qNWyHZdiZRYdw/LTwmIQKM9nCaHxL7ns="; + vendorSha256 = "sha256-ar61gvbcm7bcgoPodppqrVJnyFHdZkPIMQ6IUXNpGBA="; ldflags = [ "-X github.com/docker/compose/v2/internal.Version=${version}" "-s" "-w" ]; diff --git a/third_party/nixpkgs/pkgs/applications/virtualization/dumb-init/default.nix b/third_party/nixpkgs/pkgs/applications/virtualization/dumb-init/default.nix index bb265dc548..fa408cb910 100644 --- a/third_party/nixpkgs/pkgs/applications/virtualization/dumb-init/default.nix +++ b/third_party/nixpkgs/pkgs/applications/virtualization/dumb-init/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-aRh0xfmp+ToXIYjYaducTpZUHndZ5HlFZpFhzJ3yKgs="; }; - buildInputs = [ glibc.static ]; + buildInputs = lib.optionals (!stdenv.hostPlatform.isMusl) [ glibc.static ]; installPhase = '' runHook preInstall diff --git a/third_party/nixpkgs/pkgs/applications/virtualization/pods/default.nix b/third_party/nixpkgs/pkgs/applications/virtualization/pods/default.nix index 614f2591b5..516fba43f4 100644 --- a/third_party/nixpkgs/pkgs/applications/virtualization/pods/default.nix +++ b/third_party/nixpkgs/pkgs/applications/virtualization/pods/default.nix @@ -17,19 +17,19 @@ stdenv.mkDerivation rec { pname = "pods"; - version = "1.0.0-beta.9"; + version = "1.0.0-rc.3"; src = fetchFromGitHub { owner = "marhkb"; repo = pname; rev = "v${version}"; - sha256 = "sha256-cW6n00EPe7eFuqT2Vk27Ax0fxjz9kWSlYuS2oIj0mXY="; + sha256 = "sha256-4dRwrB2M0GooRq3Hi2nmpbQm9RaLqrkZkEDTQpEd7bo="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - sha256 = "sha256-y0njqlzAx1M7iC8bZrKlKACSiYnSRaHOrcAxs3bFF30="; + sha256 = "sha256-wGO2qp8jKHEevQ5vMDxqMzvRr1QazclhZ98M3B29PqQ="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/virtualization/toolbox/default.nix b/third_party/nixpkgs/pkgs/applications/virtualization/toolbox/default.nix new file mode 100644 index 0000000000..94928ff357 --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/virtualization/toolbox/default.nix @@ -0,0 +1,51 @@ +{ lib, buildGoModule, fetchFromGitHub, glibc, go-md2man, installShellFiles }: + +buildGoModule rec { + pname = "toolbox"; + version = "0.0.99.3"; + + src = fetchFromGitHub { + owner = "containers"; + repo = pname; + rev = version; + hash = "sha256-9HiWgEtaMypLOwXJ6Xg3grLSZOQ4NInZtcvLPV51YO8="; + }; + + patches = [ ./glibc.patch ]; + + vendorHash = "sha256-k79TcC9voQROpJnyZ0RsqxJnBT83W5Z+D+D3HnuQGsI="; + + postPatch = '' + substituteInPlace src/cmd/create.go --subst-var-by glibc ${glibc} + ''; + + modRoot = "src"; + + nativeBuildInputs = [ go-md2man installShellFiles ]; + + ldflags = [ + "-s" + "-w" + "-X github.com/containers/toolbox/pkg/version.currentVersion=${version}" + ]; + + preCheck = "export PATH=$GOPATH/bin:$PATH"; + + postInstall = '' + cd .. + for d in doc/*.md; do + go-md2man -in $d -out ''${d%.md} + done + installManPage doc/*.[1-9] + installShellCompletion --bash completion/bash/toolbox + install profile.d/toolbox.sh -Dt $out/share/profile.d + ''; + + meta = with lib; { + homepage = "https://containertoolbx.org"; + changelog = "https://github.com/containers/toolbox/releases/tag/${version}"; + description = "Tool for containerized command line environments on Linux"; + license = licenses.asl20; + maintainers = with maintainers; [ urandom ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/virtualization/toolbox/glibc.patch b/third_party/nixpkgs/pkgs/applications/virtualization/toolbox/glibc.patch new file mode 100644 index 0000000000..1055dc965a --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/virtualization/toolbox/glibc.patch @@ -0,0 +1,12 @@ +diff --git a/src/cmd/create.go b/src/cmd/create.go +index 74e90b1..113ef80 100644 +--- a/src/cmd/create.go ++++ b/src/cmd/create.go +@@ -423,6 +425,7 @@ func createContainer(container, image, release string, showCommandToEnter bool) + "--volume", toolboxPathMountArg, + "--volume", usrMountArg, + "--volume", runtimeDirectoryMountArg, ++ "--volume", "@glibc@:@glibc@:ro", + }...) + + createArgs = append(createArgs, avahiSocketMount...) diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/bevelbar/default.nix b/third_party/nixpkgs/pkgs/applications/window-managers/bevelbar/default.nix deleted file mode 100644 index 74da42f88c..0000000000 --- a/third_party/nixpkgs/pkgs/applications/window-managers/bevelbar/default.nix +++ /dev/null @@ -1,25 +0,0 @@ -{ lib, stdenv, fetchFromGitHub, libX11, libXrandr, libXft }: - -stdenv.mkDerivation rec { - pname = "bevelbar"; - version = "16.11"; - - src = fetchFromGitHub { - owner = "vain"; - repo = "bevelbar"; - rev = "v${version}"; - sha256 = "1hbwg3vdxw9fyshy85skv476p0zr4ynvhcz2xkijydpzm2j3rmjm"; - }; - - buildInputs = [ libX11 libXrandr libXft ]; - - installFlags = [ "prefix=$(out)" ]; - - meta = with lib; { - description = "An X11 status bar with fancy schmancy 1985-ish beveled borders"; - inherit (src.meta) homepage; - license = licenses.mit; - platforms = platforms.all; - maintainers = [ maintainers.neeasade ]; - }; -} diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/herbstluftwm/default.nix b/third_party/nixpkgs/pkgs/applications/window-managers/herbstluftwm/default.nix index b46179599c..4918dad35f 100644 --- a/third_party/nixpkgs/pkgs/applications/window-managers/herbstluftwm/default.nix +++ b/third_party/nixpkgs/pkgs/applications/window-managers/herbstluftwm/default.nix @@ -70,7 +70,7 @@ stdenv.mkDerivation rec { python3.pkgs.pytestCheckHook ]; - # make the package's module avalaible + # make the package's module available preCheck = '' export PYTHONPATH="$PYTHONPATH:../python" ''; diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/hyprwm/hypr/default.nix b/third_party/nixpkgs/pkgs/applications/window-managers/hyprwm/hypr/default.nix index 673fa90c50..2485552fce 100644 --- a/third_party/nixpkgs/pkgs/applications/window-managers/hyprwm/hypr/default.nix +++ b/third_party/nixpkgs/pkgs/applications/window-managers/hyprwm/hypr/default.nix @@ -1,6 +1,7 @@ { lib , stdenv , fetchFromGitHub +, fetchpatch , cairo , cmake , glib @@ -15,6 +16,7 @@ , xcbutilcursor , xcbutilkeysyms , xcbutilwm +, xcbutil , xmodmap }: @@ -31,6 +33,15 @@ stdenv.mkDerivation (finalAttrs: { patches = [ ./000-dont-set-compiler.diff + # TODO: remove on next release + (fetchpatch { + url = "https://github.com/hyprwm/Hypr/commit/08d6af2caf882247943f0e8518ad782f35d1aba4.patch"; + sha256 = "sha256-WjR12ZH8CE+l9xSeQUAPYW5r5HzoPpod5YqDPJTdTY8="; + }) + (fetchpatch { + url = "https://github.com/hyprwm/Hypr/commit/7512a3ab91865b1e11b8c4a9dfdffb25c2b153de.patch"; + sha256 = "sha256-0Hq5n115z0U44op7A1FO9tUOeMEPV0QgD5E5zcmend0="; + }) ]; nativeBuildInputs = [ @@ -51,8 +62,12 @@ stdenv.mkDerivation (finalAttrs: { xcbutilcursor xcbutilkeysyms xcbutilwm + xcbutil ]; + # src/ewmh/ewmh.cpp:67:28: error: non-constant-expression cannot be narrowed from type 'int' to 'uint32_t' (aka 'unsigned int') in initializer list + NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isDarwin "-Wno-c++11-narrowing"; + installPhase = '' runHook preInstall @@ -71,7 +86,6 @@ stdenv.mkDerivation (finalAttrs: { license = licenses.bsd3; maintainers = with maintainers; [ AndersonTorres ]; inherit (libX11.meta) platforms; - broken = stdenv.isDarwin; # xcb/xcb_atom.h not found mainProgram = "Hypr"; }; }) diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/i3/lock-color.nix b/third_party/nixpkgs/pkgs/applications/window-managers/i3/lock-color.nix index 7f08891385..4460c5f90b 100644 --- a/third_party/nixpkgs/pkgs/applications/window-managers/i3/lock-color.nix +++ b/third_party/nixpkgs/pkgs/applications/window-managers/i3/lock-color.nix @@ -25,6 +25,7 @@ stdenv.mkDerivation rec { installFlags = [ "PREFIX=\${out}" "SYSCONFDIR=\${out}/etc" "MANDIR=\${out}/share/man" ]; postInstall = '' mv $out/bin/i3lock $out/bin/i3lock-color + ln -s $out/bin/i3lock-color $out/bin/i3lock mv $out/share/man/man1/i3lock.1 $out/share/man/man1/i3lock-color.1 sed -i 's/\(^\|\s\|"\)i3lock\(\s\|$\)/\1i3lock-color\2/g' $out/share/man/man1/i3lock-color.1 ''; diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/i3/lock-fancy-rapid.nix b/third_party/nixpkgs/pkgs/applications/window-managers/i3/lock-fancy-rapid.nix index 8884b1d510..29bd81fe87 100644 --- a/third_party/nixpkgs/pkgs/applications/window-managers/i3/lock-fancy-rapid.nix +++ b/third_party/nixpkgs/pkgs/applications/window-managers/i3/lock-fancy-rapid.nix @@ -20,6 +20,7 @@ stdenv.mkDerivation rec { installPhase = '' install -D i3lock-fancy-rapid $out/bin/i3lock-fancy-rapid + ln -s $out/bin/i3lock-fancy-rapid $out/bin/i3lock ''; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/i3/lock-fancy.nix b/third_party/nixpkgs/pkgs/applications/window-managers/i3/lock-fancy.nix index 9a1b959690..f3963b43b5 100644 --- a/third_party/nixpkgs/pkgs/applications/window-managers/i3/lock-fancy.nix +++ b/third_party/nixpkgs/pkgs/applications/window-managers/i3/lock-fancy.nix @@ -41,6 +41,7 @@ stdenv.mkDerivation rec { installPhase = '' mkdir -p $out/bin $out/share/i3lock-fancy/icons cp i3lock-fancy $out/bin/i3lock-fancy + ln -s $out/bin/i3lock-fancy $out/bin/i3lock cp icons/lock*.png $out/share/i3lock-fancy/icons ''; diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/icewm/default.nix b/third_party/nixpkgs/pkgs/applications/window-managers/icewm/default.nix index fe0c275b72..ad2ed5bf34 100644 --- a/third_party/nixpkgs/pkgs/applications/window-managers/icewm/default.nix +++ b/third_party/nixpkgs/pkgs/applications/window-managers/icewm/default.nix @@ -41,13 +41,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "icewm"; - version = "3.2.3"; + version = "3.3.0"; src = fetchFromGitHub { owner = "ice-wm"; repo = "icewm"; rev = finalAttrs.version; - hash = "sha256-cG+I7WMWboMNH6A0eKFI3evN16C5EGE127q+a/PBR5E="; + hash = "sha256-Zl7ob0JcFN8sl8Zuf2aB7l7q3W8GmvVBoI1W3aLLXfU="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/labwc/default.nix b/third_party/nixpkgs/pkgs/applications/window-managers/labwc/default.nix index ba145b8528..8bd0691450 100644 --- a/third_party/nixpkgs/pkgs/applications/window-managers/labwc/default.nix +++ b/third_party/nixpkgs/pkgs/applications/window-managers/labwc/default.nix @@ -15,19 +15,23 @@ , scdoc , wayland , wayland-protocols -, wlroots +, wlroots_0_16 +, xcbutilwm , xwayland }: -stdenv.mkDerivation rec { +let + wlroots = wlroots_0_16; +in +stdenv.mkDerivation (finalAttrs: { pname = "labwc"; - version = "0.5.3"; + version = "0.6.0"; src = fetchFromGitHub { owner = "labwc"; - repo = pname; - rev = version; - hash = "sha256-YD2bGxa7uss6KRvOGM0kn8dM+277ubaYeOB7ugRZCcY="; + repo = "labwc"; + rev = finalAttrs.version; + hash = "sha256-P1hKYTW++dpV3kdmI5nBGun080gVTrKzi2WOJKR84j4="; }; nativeBuildInputs = [ @@ -49,10 +53,13 @@ stdenv.mkDerivation rec { wayland wayland-protocols wlroots + xcbutilwm xwayland ]; - mesonFlags = [ "-Dxwayland=enabled" ]; + mesonFlags = [ + (lib.mesonEnable "xwayland" true) + ]; meta = with lib; { homepage = "https://github.com/labwc/labwc"; @@ -61,4 +68,4 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ AndersonTorres ]; inherit (wayland.meta) platforms; }; -} +}) diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/maui-shell/default.nix b/third_party/nixpkgs/pkgs/applications/window-managers/maui-shell/default.nix new file mode 100644 index 0000000000..e1abf6676b --- /dev/null +++ b/third_party/nixpkgs/pkgs/applications/window-managers/maui-shell/default.nix @@ -0,0 +1,87 @@ +{ lib +, pkgs +, mkDerivation +, fetchFromGitHub +, qtquickcontrols2 +, cmake +, extra-cmake-modules +, kio +, krunner +, prison +, knotifyconfig +, kidletime +, kpeople +, kdesu +, kactivities-stats +, ktexteditor +, kinit +, kunitconversion +, kitemmodels +, phonon +, polkit-qt +, polkit +, mauikit +, mauikit-filebrowsing +, bluedevil +, plasma-nm +, plasma-pa +, bluez-qt +, maui-core +, cask-server +, mauiman +, mauikit-calendar +, qtmultimedia +}: + +mkDerivation rec { + pname = "maui-shell"; + version = "0.5.6"; + + src = fetchFromGitHub { + owner = "Nitrux"; + repo = pname; + rev = "refs/tags/v${version}"; + sha256 = "sha256-lhTtIHE+FUgZFaPYoIRgLPrBUPISeXHCg3rn0FlQg7w="; + }; + + nativeBuildInputs = [ + cmake + extra-cmake-modules + ]; + + buildInputs = [ + bluedevil + bluez-qt + cask-server + kactivities-stats + kdesu + kidletime + kinit + kitemmodels + knotifyconfig + krunner + kunitconversion + kpeople + ktexteditor + mauikit + mauikit-calendar + mauikit-filebrowsing + mauiman + maui-core + phonon + plasma-nm + plasma-pa + polkit + polkit-qt + prison + qtmultimedia + qtquickcontrols2 + ]; + + meta = with lib; { + description = "A convergent shell for desktops, tablets, and phones"; + homepage = "https://github.com/Nitrux/maui-shell"; + license = licenses.lgpl3; + maintainers = with maintainers; [ onny ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/picom/default.nix b/third_party/nixpkgs/pkgs/applications/window-managers/picom/default.nix index 384b806ce2..ddcab10957 100644 --- a/third_party/nixpkgs/pkgs/applications/window-managers/picom/default.nix +++ b/third_party/nixpkgs/pkgs/applications/window-managers/picom/default.nix @@ -32,13 +32,13 @@ stdenv.mkDerivation rec { pname = "picom"; - version = "10.1"; + version = "10.2"; src = fetchFromGitHub { owner = "yshui"; repo = "picom"; rev = "v${version}"; - hash = "sha256-EYNLLAz7CkbVGv2XMT+73RR58HzxG+Gy7b5x1qahAgo="; + hash = "sha256-C+icJXTkE+XMaU7N6JupsP8xhmRVggX9hY1P7za0pO0="; fetchSubmodules = true; }; diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/sway/bg.nix b/third_party/nixpkgs/pkgs/applications/window-managers/sway/bg.nix index 7ef4a7d1f6..fe63f661c2 100644 --- a/third_party/nixpkgs/pkgs/applications/window-managers/sway/bg.nix +++ b/third_party/nixpkgs/pkgs/applications/window-managers/sway/bg.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "swaybg"; - version = "1.1.1"; + version = "1.2.0"; src = fetchFromGitHub { owner = "swaywm"; repo = "swaybg"; rev = "v${version}"; - hash = "sha256-Lt/hn/K+CjcmU3Bs5wChiZq0VGNcraH4tSVYsmYnKjc="; + hash = "sha256-Qk5iGALlSVSzgBJzYzyLdLHhj/Zq1R4nFseACBmIBuA="; }; strictDeps = true; diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/sway/default.nix b/third_party/nixpkgs/pkgs/applications/window-managers/sway/default.nix index 61925e4ed0..e49edbd190 100644 --- a/third_party/nixpkgs/pkgs/applications/window-managers/sway/default.nix +++ b/third_party/nixpkgs/pkgs/applications/window-managers/sway/default.nix @@ -1,13 +1,13 @@ { lib, stdenv, fetchFromGitHub, substituteAll, swaybg , meson, ninja, pkg-config, wayland-scanner, scdoc -, wayland, libxkbcommon, pcre, json_c, libevdev +, wayland, libxkbcommon, pcre2, json_c, libevdev , pango, cairo, libinput, libcap, pam, gdk-pixbuf, librsvg -, wlroots, wayland-protocols, libdrm +, wlroots_0_16, wayland-protocols, libdrm , nixosTests # Used by the NixOS module: , isNixOS ? false -, enableXWayland ? true +, enableXWayland ? true, xorg , systemdSupport ? stdenv.isLinux , dbusSupport ? true , dbus @@ -23,13 +23,13 @@ let sd-bus-provider = if systemdSupport then "libsystemd" else "basu"; in stdenv.mkDerivation rec { pname = "sway-unwrapped"; - version = "1.7"; + version = "1.8"; src = fetchFromGitHub { owner = "swaywm"; repo = "sway"; rev = version; - sha256 = "0ss3l258blyf2d0lwd7pi7ga1fxfj8pxhag058k7cmjhs3y30y5l"; + hash = "sha256-r5qf50YK0Wl0gFiFdSE/J6ZU+D/Cz32u1mKzOqnIuJ0="; }; patches = [ @@ -59,12 +59,14 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - wayland libxkbcommon pcre json_c libevdev + wayland libxkbcommon pcre2 json_c libevdev pango cairo libinput libcap pam gdk-pixbuf librsvg wayland-protocols libdrm - (wlroots.override { inherit enableXWayland; }) + (wlroots_0_16.override { inherit enableXWayland; }) ] ++ lib.optionals dbusSupport [ dbus + ] ++ lib.optionals enableXWayland [ + xorg.xcbutilwm ]; mesonFlags = diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/sway/idle.nix b/third_party/nixpkgs/pkgs/applications/window-managers/sway/idle.nix index 97e3febc7b..6479760a74 100644 --- a/third_party/nixpkgs/pkgs/applications/window-managers/sway/idle.nix +++ b/third_party/nixpkgs/pkgs/applications/window-managers/sway/idle.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "swayidle"; - version = "1.7.1"; + version = "1.8.0"; src = fetchFromGitHub { owner = "swaywm"; repo = "swayidle"; rev = version; - sha256 = "06iq12p4438d6bv3jlqsf01wjaxrzlnj1bnicn41kad563aq41xl"; + sha256 = "sha256-/U6Y9H5ZqIJph3TZVcwr9+Qfd6NZNYComXuC1D9uGHg="; }; strictDeps = true; @@ -22,11 +22,8 @@ stdenv.mkDerivation rec { mesonFlags = [ "-Dman-pages=enabled" "-Dlogind=${if systemdSupport then "enabled" else "disabled"}" ]; - # Remove the `%zu` patch for the next release after 1.7.1. - # https://github.com/swaywm/swayidle/commit/e81d40fca7533f73319e76e42fa9694b21cc9e6e postPatch = '' substituteInPlace main.c \ - --replace '%lu' '%zu' \ --replace '"sh"' '"${runtimeShell}"' ''; diff --git a/third_party/nixpkgs/pkgs/applications/window-managers/sway/lock-effects.nix b/third_party/nixpkgs/pkgs/applications/window-managers/sway/lock-effects.nix index b3bb8f772f..52ff05a418 100644 --- a/third_party/nixpkgs/pkgs/applications/window-managers/sway/lock-effects.nix +++ b/third_party/nixpkgs/pkgs/applications/window-managers/sway/lock-effects.nix @@ -16,13 +16,13 @@ stdenv.mkDerivation rec { pname = "swaylock-effects"; - version = "unstable-2021-10-21"; + version = "1.6.10"; src = fetchFromGitHub { - owner = "mortie"; + owner = "jirutka"; repo = "swaylock-effects"; - rev = "a8fc557b86e70f2f7a30ca9ff9b3124f89e7f204"; - sha256 = "sha256-GN+cxzC11Dk1nN9wVWIyv+rCrg4yaHnCePRYS1c4JTk="; + rev = "v${version}"; + sha256 = "sha256-VkyH9XN/pR1UY/liG5ygDHp+ymdqCPeWHyU7/teJGbU="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/build-support/docker/default.nix b/third_party/nixpkgs/pkgs/build-support/docker/default.nix index 48c780e2db..bdc93f3643 100644 --- a/third_party/nixpkgs/pkgs/build-support/docker/default.nix +++ b/third_party/nixpkgs/pkgs/build-support/docker/default.nix @@ -486,7 +486,7 @@ rec { inherit (stream) imageName; passthru = { inherit (stream) imageTag; }; nativeBuildInputs = [ pigz ]; - } "${stream} | pigz -nT > $out"; + } "${stream} | pigz -nTR > $out"; # 1. extract the base image # 2. create the layer @@ -735,7 +735,7 @@ rec { chmod -R a-w image echo "Cooking the image..." - tar -C image --hard-dereference --sort=name --mtime="@$SOURCE_DATE_EPOCH" --owner=0 --group=0 --xform s:'^./':: -c . | pigz -nT > $out + tar -C image --hard-dereference --sort=name --mtime="@$SOURCE_DATE_EPOCH" --owner=0 --group=0 --xform s:'^./':: -c . | pigz -nTR > $out echo "Finished." ''; @@ -775,7 +775,7 @@ rec { mv repositories image/repositories mv manifest.json image/manifest.json # Create tarball and gzip - tar -C image --hard-dereference --sort=name --mtime="@$SOURCE_DATE_EPOCH" --owner=0 --group=0 --xform s:'^./':: -c . | pigz -nT > $out + tar -C image --hard-dereference --sort=name --mtime="@$SOURCE_DATE_EPOCH" --owner=0 --group=0 --xform s:'^./':: -c . | pigz -nTR > $out ''; @@ -879,7 +879,7 @@ rec { contentsList = if builtins.isList contents then contents else [ contents ]; # We store the customisation layer as a tarball, to make sure that - # things like permissions set on 'extraCommands' are not overriden + # things like permissions set on 'extraCommands' are not overridden # by Nix. Then we precompute the sha256 for performance. customisationLayer = symlinkJoin { name = "${baseName}-customisation-layer"; @@ -1220,5 +1220,5 @@ rec { inherit (stream) imageName; passthru = { inherit (stream) imageTag; }; nativeBuildInputs = [ pigz ]; - } "${stream} | pigz -nT > $out"; + } "${stream} | pigz -nTR > $out"; } diff --git a/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/default.nix b/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/default.nix index 5e8d76defe..7f05a3a4ee 100644 --- a/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/default.nix +++ b/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/default.nix @@ -2,13 +2,11 @@ , stdenvNoCC , callPackage , writeShellScript -, writeText , srcOnly , linkFarmFromDrvs , symlinkJoin , makeWrapper , dotnetCorePackages -, dotnetPackages , mkNugetSource , mkNugetDeps , nuget-to-nix @@ -61,6 +59,9 @@ # Libraries that need to be available at runtime should be passed through this. # These get wrapped into `LD_LIBRARY_PATH`. , runtimeDeps ? [ ] + # The dotnet runtime ID. If null, fetch-deps will gather dependencies for all + # platforms in meta.platforms which are supported by the sdk. +, runtimeId ? null # Tests to disable. This gets passed to `dotnet test --filter "FullyQualifiedName!={}"`, to ensure compatibility with all frameworks. # See https://docs.microsoft.com/en-us/dotnet/core/tools/dotnet-test#filter-option-details for more details. @@ -73,6 +74,8 @@ , buildType ? "Release" # If set to true, builds the application as a self-contained - removing the runtime dependency on dotnet , selfContainedBuild ? false + # Whether to explicitly enable UseAppHost when building +, useAppHost ? true # The dotnet SDK to use. , dotnet-sdk ? dotnetCorePackages.sdk_6_0 # The dotnet runtime to use. @@ -90,6 +93,10 @@ let inherit (callPackage ./hooks { inherit dotnet-sdk dotnet-test-sdk disabledTests nuget-source dotnet-runtime runtimeDeps buildType; + runtimeId = + if runtimeId != null + then runtimeId + else dotnetCorePackages.systemToDotnetRid stdenvNoCC.targetPlatform.system; }) dotnetConfigureHook dotnetBuildHook dotnetCheckHook dotnetInstallHook dotnetFixupHook; localDeps = @@ -111,13 +118,10 @@ let deps = [ _nugetDeps ] ++ lib.optional (localDeps != null) localDeps; }; - # this contains all the nuget packages that are implictly referenced by the dotnet + # this contains all the nuget packages that are implicitly referenced by the dotnet # build system. having them as separate deps allows us to avoid having to regenerate # a packages dependencies when the dotnet-sdk version changes - sdkDeps = mkNugetDeps { - name = "dotnet-sdk-${dotnet-sdk.version}-deps"; - nugetDeps = dotnet-sdk.passthru.packages; - }; + sdkDeps = dotnet-sdk.packages; sdkSource = mkNugetSource { name = "dotnet-sdk-${dotnet-sdk.version}-source"; @@ -152,22 +156,18 @@ stdenvNoCC.mkDerivation (args // { # gappsWrapperArgs gets included when wrapping for dotnet, as to avoid double wrapping dontWrapGApps = args.dontWrapGApps or true; + inherit selfContainedBuild useAppHost; + passthru = { inherit nuget-source; fetch-deps = let - # Derivations may set flags such as `--runtime ` based on the host platform to avoid restoring/building nuget dependencies they dont have or dont need. - # This introduces an issue; In this script we loop over all platforms from `meta` and add the RID flag for it, as to fetch all required dependencies. - # The script would inherit the RID flag from the derivation based on the platform building the script, and set the flag for any iteration we do over the RIDs. - # That causes conflicts. To circumvent it we remove all occurances of the flag. - flags = - let - hasRid = flag: lib.any (v: v) (map (rid: lib.hasInfix rid flag) (lib.attrValues dotnet-sdk.runtimeIdentifierMap)); - in - builtins.filter (flag: !(hasRid flag)) (dotnetFlags ++ dotnetRestoreFlags); - - runtimeIds = map (system: dotnet-sdk.systemToDotnetRid system) platforms; + flags = dotnetFlags ++ dotnetRestoreFlags; + runtimeIds = + if runtimeId != null + then [ runtimeId ] + else map (system: dotnetCorePackages.systemToDotnetRid system) platforms; in writeShellScript "fetch-${pname}-deps" '' set -euo pipefail diff --git a/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/default.nix b/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/default.nix index 1cc88602ff..2309ae6240 100644 --- a/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/default.nix +++ b/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/default.nix @@ -9,7 +9,9 @@ , dotnet-runtime , runtimeDeps , buildType +, runtimeId }: +assert (builtins.isString runtimeId); let libraryPath = lib.makeLibraryPath runtimeDeps; @@ -21,6 +23,7 @@ in deps = [ dotnet-sdk nuget-source ]; substitutions = { nugetSource = nuget-source; + inherit runtimeId; }; } ./dotnet-configure-hook.sh) { }; @@ -29,7 +32,7 @@ in name = "dotnet-build-hook"; deps = [ dotnet-sdk ]; substitutions = { - inherit buildType; + inherit buildType runtimeId; }; } ./dotnet-build-hook.sh) { }; @@ -49,7 +52,7 @@ in name = "dotnet-install-hook"; deps = [ dotnet-sdk ]; substitutions = { - inherit buildType; + inherit buildType runtimeId; }; } ./dotnet-install-hook.sh) { }; diff --git a/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-build-hook.sh b/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-build-hook.sh index 9199b8d02a..8f7f773393 100644 --- a/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-build-hook.sh +++ b/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-build-hook.sh @@ -15,11 +15,15 @@ dotnetBuildHook() { fi if [ "${selfContainedBuild-}" ]; then - dotnetBuildFlags+=("-p:SelfContained=true") + dotnetBuildFlags+=(--runtime "@runtimeId@" "-p:SelfContained=true") else dotnetBuildFlags+=("-p:SelfContained=false") fi + if [ "${useAppHost-}" ]; then + dotnetBuildFlags+=("-p:UseAppHost=true") + fi + if [ "${version-}" ]; then local -r versionFlag="-p:Version=${version-}" fi @@ -31,7 +35,6 @@ dotnetBuildHook() { -p:BuildInParallel=$parallelBuildFlag \ -p:ContinuousIntegrationBuild=true \ -p:Deterministic=true \ - -p:UseAppHost=true \ --configuration "@buildType@" \ --no-restore \ ${versionFlag-} \ diff --git a/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-check-hook.sh b/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-check-hook.sh index 0c0e5d310e..fcb77c063b 100644 --- a/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-check-hook.sh +++ b/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-check-hook.sh @@ -16,7 +16,7 @@ dotnetCheckHook() { local -r maxCpuFlag="1" fi - for project in ${testProjectFile[@]-}; do + for project in ${testProjectFile[@]-${projectFile[@]}}; do env "LD_LIBRARY_PATH=@libraryPath@" \ dotnet test "$project" \ -maxcpucount:$maxCpuFlag \ diff --git a/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-configure-hook.sh b/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-configure-hook.sh index 3479f58bb3..1e33ebbaef 100644 --- a/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-configure-hook.sh +++ b/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-configure-hook.sh @@ -18,6 +18,7 @@ dotnetConfigureHook() { env dotnet restore ${project-} \ -p:ContinuousIntegrationBuild=true \ -p:Deterministic=true \ + --runtime "@runtimeId@" \ --source "@nugetSource@/lib" \ ${parallelFlag-} \ ${dotnetRestoreFlags[@]} \ diff --git a/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-install-hook.sh b/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-install-hook.sh index 217e79e41b..831059f941 100644 --- a/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-install-hook.sh +++ b/third_party/nixpkgs/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-install-hook.sh @@ -7,17 +7,20 @@ dotnetInstallHook() { runHook preInstall if [ "${selfContainedBuild-}" ]; then - dotnetInstallFlags+=("--self-contained") + dotnetInstallFlags+=(--runtime "@runtimeId@" "--self-contained") else dotnetInstallFlags+=("--no-self-contained") fi + if [ "${useAppHost-}" ]; then + dotnetInstallFlags+=("-p:UseAppHost=true") + fi + dotnetPublish() { local -r project="${1-}" env dotnet publish ${project-} \ -p:ContinuousIntegrationBuild=true \ -p:Deterministic=true \ - -p:UseAppHost=true \ --output "$out/lib/${pname}" \ --configuration "@buildType@" \ --no-build \ diff --git a/third_party/nixpkgs/pkgs/build-support/fetchfirefoxaddon/tests.nix b/third_party/nixpkgs/pkgs/build-support/fetchfirefoxaddon/tests.nix index fd70d0f82a..a29f65c542 100644 --- a/third_party/nixpkgs/pkgs/build-support/fetchfirefoxaddon/tests.nix +++ b/third_party/nixpkgs/pkgs/build-support/fetchfirefoxaddon/tests.nix @@ -7,7 +7,7 @@ url = "https://addons.mozilla.org/firefox/downloads/file/3059971/image_search_options-3.0.12-fx.xpi"; sha256 = "sha256-H73YWX/DKxvhEwKpWOo7orAQ7c/rQywpljeyxYxv0Gg="; }; - overidden-source = + overridden-source = let image-search-options = fetchurl { url = "https://addons.mozilla.org/firefox/downloads/file/3059971/image_search_options-3.0.12-fx.xpi"; diff --git a/third_party/nixpkgs/pkgs/build-support/make-hardcode-gsettings-patch/default.nix b/third_party/nixpkgs/pkgs/build-support/make-hardcode-gsettings-patch/default.nix new file mode 100644 index 0000000000..a1d2de21c4 --- /dev/null +++ b/third_party/nixpkgs/pkgs/build-support/make-hardcode-gsettings-patch/default.nix @@ -0,0 +1,60 @@ +{ + runCommand, + git, + coccinelle, + python3, +}: + +/* + Can be used as part of an update script to automatically create a patch + hardcoding the path of all GSettings schemas in C code. + For example: + passthru = { + hardcodeGsettingsPatch = makeHardcodeGsettingsPatch { + inherit src; + schemaIdToVariableMapping = { + ... + }; + }; + + updateScript = + let + updateSource = ...; + updatePatch = _experimental-update-script-combinators.copyAttrOutputToFile "evolution-ews.hardcodeGsettingsPatch" ./hardcode-gsettings.patch; + in + _experimental-update-script-combinators.sequence [ + updateSource + updatePatch + ]; + }; + } + takes as input a mapping from schema path to variable name. + For example `{ "org.gnome.evolution" = "EVOLUTION_SCHEMA_PATH"; }` + hardcodes looking for `org.gnome.evolution` into `@EVOLUTION_SCHEMA_PATH@`. + All schemas must be listed. +*/ +{ + src, + schemaIdToVariableMapping, +}: + +runCommand + "hardcode-gsettings.patch" + { + inherit src; + nativeBuildInputs = [ + git + coccinelle + python3 # For patch script + ]; + } + '' + unpackPhase + cd "''${sourceRoot:-.}" + set -x + cp ${builtins.toFile "glib-schema-to-var.json" (builtins.toJSON schemaIdToVariableMapping)} ./glib-schema-to-var.json + git init + git add -A + spatch --sp-file "${./hardcode-gsettings.cocci}" --dir . --in-place + git diff > "$out" + '' diff --git a/third_party/nixpkgs/pkgs/build-support/make-hardcode-gsettings-patch/hardcode-gsettings.cocci b/third_party/nixpkgs/pkgs/build-support/make-hardcode-gsettings-patch/hardcode-gsettings.cocci new file mode 100644 index 0000000000..a265f5fac3 --- /dev/null +++ b/third_party/nixpkgs/pkgs/build-support/make-hardcode-gsettings-patch/hardcode-gsettings.cocci @@ -0,0 +1,142 @@ +/** + * Since Nix does not have a standard location like /usr/share, + * where GSettings system could look for schemas, we need to point the software to a correct location somehow. + * For executables, we handle this using wrappers but this is not an option for libraries like e-d-s. + * Instead, we hardcode the schema path when creating the settings. + * A schema path (ie org.gnome.evolution) can be replaced by @EVOLUTION_SCHEMA_ID@ + * which is then replaced at build time by substituteAll. + * The mapping is provided in a json file ./glib-schema-to-var.json + */ + +@initialize:python@ +@@ +import json + +cpp_constants = {} + +def register_cpp_constant(const_name, val): + cpp_constants[const_name] = val.strip() + +def resolve_cpp_constant(const_name): + return cpp_constants.get(const_name, const_name) + +with open("./glib-schema-to-var.json") as mapping_file: + schema_to_var = json.load(mapping_file); + +def get_schema_directory(schema_id): + # Sometimes the schema id is referenced using C preprocessor #define constant in the same file + # let’s try to resolve it first. + schema_id = resolve_cpp_constant(schema_id.strip()).strip('"') + if schema_id in schema_to_var: + return f'"@{schema_to_var[schema_id]}@"' + raise Exception(f"Unknown schema path {schema_id!r}, please add it to ./glib-schema-to-var.json") + +@find_cpp_constants@ +identifier const_name; +expression val; +@@ + +#define const_name val + +@script:python record_cpp_constants depends on find_cpp_constants@ +const_name << find_cpp_constants.const_name; +val << find_cpp_constants.val; +@@ + +register_cpp_constant(const_name, val) + + +@depends on ever record_cpp_constants || never record_cpp_constants@ +// We want to run after #define constants have been collected but even if there are no #defines. +expression SCHEMA_ID; +expression settings; +// Coccinelle does not like autocleanup macros in + sections, +// let’s use fresh id with concatenation to produce the code as a string. +fresh identifier schema_source_decl = "g_autoptr(GSettingsSchemaSource) " ## "schema_source"; +fresh identifier schema_decl = "g_autoptr(GSettingsSchema) " ## "schema"; +fresh identifier SCHEMA_DIRECTORY = script:python(SCHEMA_ID) { get_schema_directory(SCHEMA_ID) }; +@@ +-settings = g_settings_new(SCHEMA_ID); ++{ ++ schema_source_decl; ++ schema_decl; ++ schema_source = g_settings_schema_source_new_from_directory(SCHEMA_DIRECTORY, ++ g_settings_schema_source_get_default(), ++ TRUE, ++ NULL); ++ schema = g_settings_schema_source_lookup(schema_source, SCHEMA_ID, FALSE); ++ settings = g_settings_new_full(schema, NULL, NULL); ++} + + +@depends on ever record_cpp_constants || never record_cpp_constants@ +// We want to run after #define constants have been collected but even if there are no #defines. +expression SCHEMA_ID; +expression settings; +expression BACKEND; +// Coccinelle does not like autocleanup macros in + sections, +// let’s use fresh id with concatenation to produce the code as a string. +fresh identifier schema_source_decl = "g_autoptr(GSettingsSchemaSource) " ## "schema_source"; +fresh identifier schema_decl = "g_autoptr(GSettingsSchema) " ## "schema"; +fresh identifier SCHEMA_DIRECTORY = script:python(SCHEMA_ID) { get_schema_directory(SCHEMA_ID) }; +@@ +-settings = g_settings_new_with_backend(SCHEMA_ID, BACKEND); ++{ ++ schema_source_decl; ++ schema_decl; ++ schema_source = g_settings_schema_source_new_from_directory(SCHEMA_DIRECTORY, ++ g_settings_schema_source_get_default(), ++ TRUE, ++ NULL); ++ schema = g_settings_schema_source_lookup(schema_source, SCHEMA_ID, FALSE); ++ settings = g_settings_new_full(schema, BACKEND, NULL); ++} + + +@depends on ever record_cpp_constants || never record_cpp_constants@ +// We want to run after #define constants have been collected but even if there are no #defines. +expression SCHEMA_ID; +expression settings; +expression BACKEND; +expression PATH; +// Coccinelle does not like autocleanup macros in + sections, +// let’s use fresh id with concatenation to produce the code as a string. +fresh identifier schema_source_decl = "g_autoptr(GSettingsSchemaSource) " ## "schema_source"; +fresh identifier schema_decl = "g_autoptr(GSettingsSchema) " ## "schema"; +fresh identifier SCHEMA_DIRECTORY = script:python(SCHEMA_ID) { get_schema_directory(SCHEMA_ID) }; +@@ +-settings = g_settings_new_with_backend_and_path(SCHEMA_ID, BACKEND, PATH); ++{ ++ schema_source_decl; ++ schema_decl; ++ schema_source = g_settings_schema_source_new_from_directory(SCHEMA_DIRECTORY, ++ g_settings_schema_source_get_default(), ++ TRUE, ++ NULL); ++ schema = g_settings_schema_source_lookup(schema_source, SCHEMA_ID, FALSE); ++ settings = g_settings_new_full(schema, BACKEND, PATH); ++} + + +@depends on ever record_cpp_constants || never record_cpp_constants@ +// We want to run after #define constants have been collected but even if there are no #defines. +expression SCHEMA_ID; +expression settings; +expression PATH; +// Coccinelle does not like autocleanup macros in + sections, +// let’s use fresh id with concatenation to produce the code as a string. +fresh identifier schema_source_decl = "g_autoptr(GSettingsSchemaSource) " ## "schema_source"; +fresh identifier schema_decl = "g_autoptr(GSettingsSchema) " ## "schema"; +fresh identifier SCHEMA_DIRECTORY = script:python(SCHEMA_ID) { get_schema_directory(SCHEMA_ID) }; +@@ +-settings = g_settings_new_with_path(SCHEMA_ID, PATH); ++{ ++ schema_source_decl; ++ schema_decl; ++ schema_source = g_settings_schema_source_new_from_directory(SCHEMA_DIRECTORY, ++ g_settings_schema_source_get_default(), ++ TRUE, ++ NULL); ++ schema = g_settings_schema_source_lookup(schema_source, SCHEMA_ID, FALSE); ++ settings = g_settings_new_full(schema, NULL, PATH); ++} diff --git a/third_party/nixpkgs/pkgs/build-support/node/build-npm-package/hooks/default.nix b/third_party/nixpkgs/pkgs/build-support/node/build-npm-package/hooks/default.nix index ff0930426d..65ac661cea 100644 --- a/third_party/nixpkgs/pkgs/build-support/node/build-npm-package/hooks/default.nix +++ b/third_party/nixpkgs/pkgs/build-support/node/build-npm-package/hooks/default.nix @@ -26,7 +26,7 @@ npmInstallHook = makeSetupHook { name = "npm-install-hook"; - deps = [ makeWrapper ]; + deps = [ buildPackages.makeWrapper ]; substitutions = { hostNode = "${nodejs}/bin/node"; jq = "${buildPackages.jq}/bin/jq"; diff --git a/third_party/nixpkgs/pkgs/build-support/node/build-npm-package/hooks/npm-build-hook.sh b/third_party/nixpkgs/pkgs/build-support/node/build-npm-package/hooks/npm-build-hook.sh index 7f601512c7..b712e3a054 100644 --- a/third_party/nixpkgs/pkgs/build-support/node/build-npm-package/hooks/npm-build-hook.sh +++ b/third_party/nixpkgs/pkgs/build-support/node/build-npm-package/hooks/npm-build-hook.sh @@ -20,7 +20,7 @@ npmBuildHook() { echo echo "Here are a few things you can try, depending on the error:" echo "1. Make sure your build script ($npmBuildScript) exists" - echo " If there is none, set `dontNpmBuild = true`." + echo ' If there is none, set `dontNpmBuild = true`.' echo '2. If the error being thrown is something similar to "error:0308010C:digital envelope routines::unsupported", add `NODE_OPTIONS = "--openssl-legacy-provider"` to your derivation' echo " See https://github.com/webpack/webpack/issues/14532 for more information." echo diff --git a/third_party/nixpkgs/pkgs/build-support/node/build-npm-package/hooks/npm-config-hook.sh b/third_party/nixpkgs/pkgs/build-support/node/build-npm-package/hooks/npm-config-hook.sh index 6fa6a0f940..a311186268 100644 --- a/third_party/nixpkgs/pkgs/build-support/node/build-npm-package/hooks/npm-config-hook.sh +++ b/third_party/nixpkgs/pkgs/build-support/node/build-npm-package/hooks/npm-config-hook.sh @@ -28,7 +28,7 @@ npmConfigHook() { if ! [ -e "$srcLockfile" ]; then echo echo "ERROR: Missing package-lock.json from src. Expected to find it at: $srcLockfile" - echo "Hint: You can use the patches attribute to add a package-lock.json manually to the build." + echo "Hint: You can copy a vendored package-lock.json file via postPatch." echo exit 1 diff --git a/third_party/nixpkgs/pkgs/build-support/release/source-tarball.nix b/third_party/nixpkgs/pkgs/build-support/release/source-tarball.nix index c7129ae83f..742cce13b7 100644 --- a/third_party/nixpkgs/pkgs/build-support/release/source-tarball.nix +++ b/third_party/nixpkgs/pkgs/build-support/release/source-tarball.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation ( - # First, attributes that can be overriden by the caller (via args): + # First, attributes that can be overridden by the caller (via args): { # By default, only configure and build a source distribution. # Some packages can only build a distribution after a general diff --git a/third_party/nixpkgs/pkgs/build-support/rust/build-rust-crate/test/default.nix b/third_party/nixpkgs/pkgs/build-support/rust/build-rust-crate/test/default.nix index a4536a1751..1ecef4c8e3 100644 --- a/third_party/nixpkgs/pkgs/build-support/rust/build-rust-crate/test/default.nix +++ b/third_party/nixpkgs/pkgs/build-support/rust/build-rust-crate/test/default.nix @@ -576,7 +576,7 @@ let expectedFiles = [ "./bin/test_binary1" ] ++ lib.optionals stdenv.isDarwin [ - # On Darwin, the debug symbols are in a seperate directory. + # On Darwin, the debug symbols are in a separate directory. "./bin/test_binary1.dSYM/Contents/Info.plist" "./bin/test_binary1.dSYM/Contents/Resources/DWARF/test_binary1" ]; diff --git a/third_party/nixpkgs/pkgs/build-support/rust/build-rust-crate/test/rcgen-crates.nix b/third_party/nixpkgs/pkgs/build-support/rust/build-rust-crate/test/rcgen-crates.nix index 0f97c9b724..e15390c3ff 100644 --- a/third_party/nixpkgs/pkgs/build-support/rust/build-rust-crate/test/rcgen-crates.nix +++ b/third_party/nixpkgs/pkgs/build-support/rust/build-rust-crate/test/rcgen-crates.nix @@ -2931,7 +2931,7 @@ rec { /* Returns a crate which depends on successful test execution of crate given as the second argument. - testCrateFlags: list of flags to pass to the test exectuable + testCrateFlags: list of flags to pass to the test executable testInputs: list of packages that should be available during test execution */ crateWithTest = { crate, testCrate, testCrateFlags, testInputs, testPreRun, testPostRun }: diff --git a/third_party/nixpkgs/pkgs/build-support/rust/default-crate-overrides.nix b/third_party/nixpkgs/pkgs/build-support/rust/default-crate-overrides.nix index fa421406e6..cc6abdb90d 100644 --- a/third_party/nixpkgs/pkgs/build-support/rust/default-crate-overrides.nix +++ b/third_party/nixpkgs/pkgs/build-support/rust/default-crate-overrides.nix @@ -1,5 +1,6 @@ { lib , stdenv +, atk , pkg-config , curl , darwin @@ -19,9 +20,11 @@ , foundationdb , capnproto , nettle +, gtk4 , clang , llvmPackages , linux-pam +, pango , cmake , glib , freetype @@ -45,6 +48,11 @@ in buildInputs = [ cairo ]; }; + cairo-sys-rs = attrs: { + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ cairo ]; + }; + capnp-rpc = attrs: { nativeBuildInputs = [ capnproto ]; }; @@ -73,8 +81,6 @@ in }; evdev-sys = attrs: { - LIBGIT2_SYS_USE_PKG_CONFIG = true; - nativeBuildInputs = [ pkg-config ]; buildInputs = [ libevdev ]; }; @@ -122,6 +128,21 @@ in buildInputs = [ gdk-pixbuf ]; }; + gtk4-sys = attrs: { + buildInputs = [ gtk4 ]; + nativeBuildInputs = [ pkg-config ]; + }; + + gdk4-sys = attrs: { + buildInputs = [ gtk4 ]; + nativeBuildInputs = [ pkg-config ]; + }; + + gsk4-sys = attrs: { + buildInputs = [ gtk4 ]; + nativeBuildInputs = [ pkg-config ]; + }; + libgit2-sys = attrs: { LIBGIT2_SYS_USE_PKG_CONFIG = true; nativeBuildInputs = [ pkg-config ]; @@ -167,6 +188,11 @@ in buildInputs = [ linux-pam ]; }; + pango-sys = attr: { + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ pango ]; + }; + pq-sys = attr: { nativeBuildInputs = [ pkg-config ]; buildInputs = [ postgresql ]; @@ -202,6 +228,11 @@ in buildInputs = [ gmp ]; }; + pangocairo-sys = attr: { + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ pango ]; + }; + sequoia-store = attrs: { nativeBuildInputs = [ capnproto ]; buildInputs = [ sqlite gmp ]; @@ -233,4 +264,10 @@ in xcb = attrs: { buildInputs = [ python3 ]; }; + + atk-sys = attrs: { + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ atk ]; + }; + } diff --git a/third_party/nixpkgs/pkgs/build-support/rust/import-cargo-lock.nix b/third_party/nixpkgs/pkgs/build-support/rust/import-cargo-lock.nix index e571c01f95..7a4ddec3eb 100644 --- a/third_party/nixpkgs/pkgs/build-support/rust/import-cargo-lock.nix +++ b/third_party/nixpkgs/pkgs/build-support/rust/import-cargo-lock.nix @@ -7,6 +7,9 @@ # Cargo lock file contents as string , lockFileContents ? null + # Allow `builtins.fetchGit` to be used to not require hashes for git dependencies +, allowBuiltinFetchGit ? false + # Hashes for git dependencies. , outputHashes ? {} } @ args: @@ -38,14 +41,14 @@ let # There is no source attribute for the source package itself. But # since we do not want to vendor the source package anyway, we can # safely skip it. - depPackages = (builtins.filter (p: p ? "source") packages); + depPackages = builtins.filter (p: p ? "source") packages; # Create dependent crates from packages. # # Force evaluation of the git SHA -> hash mapping, so that an error is # thrown if there are stale hashes. We cannot rely on gitShaOutputHash # being evaluated otherwise, since there could be no git dependencies. - depCrates = builtins.deepSeq (gitShaOutputHash) (builtins.map mkCrate depPackages); + depCrates = builtins.deepSeq gitShaOutputHash (builtins.map mkCrate depPackages); # Map package name + version to git commit SHA for packages with a git source. namesGitShas = builtins.listToAttrs ( @@ -117,12 +120,20 @@ let If you use `buildRustPackage`, you can add this attribute to the `cargoLock` attribute set. ''; - sha256 = gitShaOutputHash.${gitParts.sha} or missingHash; - tree = fetchgit { - inherit sha256; - inherit (gitParts) url; - rev = gitParts.sha; # The commit SHA is always available. - }; + tree = + if gitShaOutputHash ? ${gitParts.sha} then + fetchgit { + inherit (gitParts) url; + rev = gitParts.sha; # The commit SHA is always available. + sha256 = gitShaOutputHash.${gitParts.sha}; + } + else if allowBuiltinFetchGit then + builtins.fetchGit { + inherit (gitParts) url; + rev = gitParts.sha; + } + else + missingHash; in runCommand "${pkg.name}-${pkg.version}" {} '' tree=${tree} diff --git a/third_party/nixpkgs/pkgs/build-support/trivial-builders.nix b/third_party/nixpkgs/pkgs/build-support/trivial-builders.nix index f174424e26..80c3214f06 100644 --- a/third_party/nixpkgs/pkgs/build-support/trivial-builders.nix +++ b/third_party/nixpkgs/pkgs/build-support/trivial-builders.nix @@ -66,14 +66,15 @@ rec { # prevent infinite recursion for the default stdenv value defaultStdenv = stdenv; in - { stdenv ? defaultStdenv + { # which stdenv to use, defaults to a stdenv with a C compiler, pkgs.stdenv - , runLocal ? false + stdenv ? defaultStdenv # whether to build this derivation locally instead of substituting - , derivationArgs ? {} + , runLocal ? false # extra arguments to pass to stdenv.mkDerivation - , name + , derivationArgs ? {} # name of the resulting derivation + , name # TODO(@Artturin): enable strictDeps always }: buildCommand: stdenv.mkDerivation ({ diff --git a/third_party/nixpkgs/pkgs/build-support/vm/default.nix b/third_party/nixpkgs/pkgs/build-support/vm/default.nix index 06e1deb478..7bae2fc7cf 100644 --- a/third_party/nixpkgs/pkgs/build-support/vm/default.nix +++ b/third_party/nixpkgs/pkgs/build-support/vm/default.nix @@ -977,45 +977,79 @@ rec { packages = commonDebPackages ++ [ "diffutils" "libc-bin" ]; }; - debian9i386 = { - name = "debian-9.13-stretch-i386"; - fullName = "Debian 9.13 Stretch (i386)"; - packagesList = fetchurl { - url = "https://snapshot.debian.org/archive/debian/20210526T143040Z/dists/stretch/main/binary-i386/Packages.xz"; - sha256 = "sha256-fFRumd20wuVaYxzw0VPkAw5mQo8kIg+eXII15VSz9wA="; - }; - urlPrefix = "mirror://debian"; - packages = commonDebianPackages; + ubuntu2204i386 = { + name = "ubuntu-22.04-jammy-i386"; + fullName = "Ubuntu 22.04 Jammy (i386)"; + packagesLists = + [ (fetchurl { + url = "mirror://ubuntu/dists/jammy/main/binary-i386/Packages.xz"; + sha256 = "sha256-iZBmwT0ep4v+V3sayybbOgZBOFFZwPGpOKtmuLMMVPQ="; + }) + (fetchurl { + url = "mirror://ubuntu/dists/jammy/universe/binary-i386/Packages.xz"; + sha256 = "sha256-DO2LdpZ9rDDBhWj2gvDWd0TJJVZHxKsYTKTi6GXjm1E="; + }) + ]; + urlPrefix = "mirror://ubuntu"; + packages = commonDebPackages ++ [ "diffutils" "libc-bin" ]; }; - debian9x86_64 = { - name = "debian-9.13-stretch-amd64"; - fullName = "Debian 9.13 Stretch (amd64)"; - packagesList = fetchurl { - url = "https://snapshot.debian.org/archive/debian/20210526T143040Z/dists/stretch/main/binary-amd64/Packages.xz"; - sha256 = "sha256-1p4DEVpTGlBE3PtbQ90kYw4QNHkW0F4rna/Xz+ncMhw="; - }; - urlPrefix = "mirror://debian"; - packages = commonDebianPackages; + ubuntu2204x86_64 = { + name = "ubuntu-22.04-jammy-amd64"; + fullName = "Ubuntu 22.04 Jammy (amd64)"; + packagesLists = + [ (fetchurl { + url = "mirror://ubuntu/dists/jammy/main/binary-amd64/Packages.xz"; + sha256 = "sha256-N8tX8VVMv6ccWinun/7hipqMF4K7BWjgh0t/9M6PnBE="; + }) + (fetchurl { + url = "mirror://ubuntu/dists/jammy/universe/binary-amd64/Packages.xz"; + sha256 = "sha256-0pyyTJP+xfQyVXBrzn60bUd5lSA52MaKwbsUpvNlXOI="; + }) + ]; + urlPrefix = "mirror://ubuntu"; + packages = commonDebPackages ++ [ "diffutils" "libc-bin" ]; }; debian10i386 = { - name = "debian-10.9-buster-i386"; - fullName = "Debian 10.9 Buster (i386)"; + name = "debian-10.13-buster-i386"; + fullName = "Debian 10.13 Buster (i386)"; packagesList = fetchurl { - url = "https://snapshot.debian.org/archive/debian/20210526T143040Z/dists/buster/main/binary-i386/Packages.xz"; - sha256 = "sha256-zlkbKV+IGBCyWKD4v4LFM/EUA4TYS9fkLBPuF6MgUDo="; + url = "https://snapshot.debian.org/archive/debian/20221126T084953Z/dists/buster/main/binary-i386/Packages.xz"; + hash = "sha256-n9JquhtZgxw3qr9BX0MQoY3ZTIHN0dit+iru3DC31UY="; }; urlPrefix = "mirror://debian"; packages = commonDebianPackages; }; debian10x86_64 = { - name = "debian-10.9-buster-amd64"; - fullName = "Debian 10.9 Buster (amd64)"; + name = "debian-10.13-buster-amd64"; + fullName = "Debian 10.13 Buster (amd64)"; packagesList = fetchurl { - url = "https://snapshot.debian.org/archive/debian/20210526T143040Z/dists/buster/main/binary-amd64/Packages.xz"; - sha256 = "sha256-k13toY1b3CX7GBPQ7Jm24OMqCEsgPlGK8M99x57o69o="; + url = "https://snapshot.debian.org/archive/debian/20221126T084953Z/dists/buster/main/binary-amd64/Packages.xz"; + hash = "sha256-YukIIB3u87jgp9oudwklsxyKVKjSL618wFgDSXiFmjU="; + }; + urlPrefix = "mirror://debian"; + packages = commonDebianPackages; + }; + + debian11i386 = { + name = "debian-11.5-bullseye-i386"; + fullName = "Debian 11.5 Bullseye (i386)"; + packagesList = fetchurl { + url = "https://snapshot.debian.org/archive/debian/20221126T084953Z/dists/bullseye/main/binary-i386/Packages.xz"; + hash = "sha256-tHrWSd4K5TCwIaLTPqK/Rcon0O0r+Jsxb7OcchOo8Vo="; + }; + urlPrefix = "mirror://debian"; + packages = commonDebianPackages; + }; + + debian11x86_64 = { + name = "debian-11.5-bullseye-amd64"; + fullName = "Debian 11.5 Bullseye (amd64)"; + packagesList = fetchurl { + url = "https://snapshot.debian.org/archive/debian/20221126T084953Z/dists/bullseye/main/binary-amd64/Packages.xz"; + hash = "sha256-whpBERKOPyhrWguVQ2QchrwRHU4tCkGwu42x6khF/2g="; }; urlPrefix = "mirror://debian"; packages = commonDebianPackages; @@ -1156,7 +1190,7 @@ rec { of the default image parameters can be given. In particular, `extraPackages' specifies the names of additional packages from the distribution that should be included in the image; `packages' - allows the entire set of packages to be overriden; and `size' + allows the entire set of packages to be overridden; and `size' sets the size of the disk in megabytes. E.g., `diskImageFuns.ubuntu1004x86_64 { extraPackages = ["firefox"]; size = 8192; }' builds an 8 GiB image containing Firefox in diff --git a/third_party/nixpkgs/pkgs/common-updater/nix-update.nix b/third_party/nixpkgs/pkgs/common-updater/nix-update.nix index bb547302b7..269e1b6e64 100644 --- a/third_party/nixpkgs/pkgs/common-updater/nix-update.nix +++ b/third_party/nixpkgs/pkgs/common-updater/nix-update.nix @@ -1,7 +1,7 @@ -{ nix-update }: +{ lib, nix-update }: -{ attrPath -, extraArgs ? [] +{ attrPath ? null +, extraArgs ? [ ] }: -[ "${nix-update}/bin/nix-update" ] ++ extraArgs ++ [ attrPath ] +[ "${nix-update}/bin/nix-update" ] ++ extraArgs ++ lib.optional (attrPath != null) attrPath diff --git a/third_party/nixpkgs/pkgs/data/fonts/garamond-libre/default.nix b/third_party/nixpkgs/pkgs/data/fonts/garamond-libre/default.nix new file mode 100644 index 0000000000..202ae2ce41 --- /dev/null +++ b/third_party/nixpkgs/pkgs/data/fonts/garamond-libre/default.nix @@ -0,0 +1,26 @@ +{ lib, fetchzip }: + +fetchzip rec { + pname = "garamond-libre"; + version = "1.4"; + + url = "https://github.com/dbenjaminmiller/garamond-libre/releases/download/${version}/garamond-libre_${version}.zip"; + stripRoot = false; + + postFetch = '' + install -Dm644 $out/*.otf -t $out/share/fonts/opentype + shopt -s extglob dotglob + rm -rf $out/!(share) + shopt -u extglob dotglob + ''; + + sha256 = "6WiuUe3CHXXL/0G7wURvSIgWPQ4isl50e3OBQ+ui0U4="; + + meta = with lib; { + homepage = "https://github.com/dbenjaminmiller/garamond-libre"; + description = "Garamond Libre font family"; + maintainers = with maintainers; [ drupol ]; + license = licenses.x11; + platforms = platforms.all; + }; +} diff --git a/third_party/nixpkgs/pkgs/data/fonts/google-fonts/default.nix b/third_party/nixpkgs/pkgs/data/fonts/google-fonts/default.nix index b1abb26f9f..4503b09354 100644 --- a/third_party/nixpkgs/pkgs/data/fonts/google-fonts/default.nix +++ b/third_party/nixpkgs/pkgs/data/fonts/google-fonts/default.nix @@ -8,7 +8,7 @@ stdenvNoCC.mkDerivation { pname = "google-fonts"; version = "unstable-2022-11-14"; - # Adobe Blank is split out in a seperate output, + # Adobe Blank is split out in a separate output, # because it causes crashes with `libfontconfig`. # It has an absurd number of symbols outputs = [ "out" "adobeBlank" ]; diff --git a/third_party/nixpkgs/pkgs/data/fonts/hackgen/nerdfont.nix b/third_party/nixpkgs/pkgs/data/fonts/hackgen/nerdfont.nix index effa2bc45a..f563a2eb47 100644 --- a/third_party/nixpkgs/pkgs/data/fonts/hackgen/nerdfont.nix +++ b/third_party/nixpkgs/pkgs/data/fonts/hackgen/nerdfont.nix @@ -4,10 +4,10 @@ fetchzip rec { pname = "hackgen-nf-font"; - version = "2.7.1"; + version = "2.8.0"; url = "https://github.com/yuru7/HackGen/releases/download/v${version}/HackGen_NF_v${version}.zip"; - sha256 = "sha256-9sylGr37kKIGWgThZFqL2y6oI3t2z4kbXYk5DBMIb/g="; + sha256 = "sha256-xRFedeavEJY9OZg+gePF5ImpLTYdbSba5Wr9k0ivpkE="; postFetch = '' install -Dm644 $out/*.ttf -t $out/share/fonts/hackgen-nf shopt -s extglob dotglob diff --git a/third_party/nixpkgs/pkgs/data/fonts/iosevka/bin.nix b/third_party/nixpkgs/pkgs/data/fonts/iosevka/bin.nix index c797587dd0..ac9569fc95 100644 --- a/third_party/nixpkgs/pkgs/data/fonts/iosevka/bin.nix +++ b/third_party/nixpkgs/pkgs/data/fonts/iosevka/bin.nix @@ -11,7 +11,7 @@ let (builtins.attrNames (builtins.removeAttrs variantHashes [ "iosevka" ])); in stdenv.mkDerivation rec { pname = "${name}-bin"; - version = "16.7.0"; + version = "16.8.2"; src = fetchurl { url = "https://github.com/be5invis/Iosevka/releases/download/v${version}/ttc-${name}-${version}.zip"; diff --git a/third_party/nixpkgs/pkgs/data/fonts/iosevka/variants.nix b/third_party/nixpkgs/pkgs/data/fonts/iosevka/variants.nix index 0edc0984ce..a1da74c34b 100644 --- a/third_party/nixpkgs/pkgs/data/fonts/iosevka/variants.nix +++ b/third_party/nixpkgs/pkgs/data/fonts/iosevka/variants.nix @@ -1,95 +1,95 @@ # This file was autogenerated. DO NOT EDIT! { - iosevka = "0wyi99j9zangbfj8rdfwgmgnl7f2s4d07pc8pvkjnzw8n4nz4rkn"; - iosevka-aile = "1szwyzri6j9rfgw3jrppg1gnj48bl77pvgm944jiwxhdl1dhzlqh"; - iosevka-curly = "0mzdq2shi51c6hhca8waxbj8i0pb3jw7b4rn0h4941kq8y9qddzs"; - iosevka-curly-slab = "106f97mh5ph2ykk2mk4am9vbavr41vznl8f2w02jaj81wk5xv6gd"; - iosevka-etoile = "1axnc8hvwvn0y2pzfid63s3lzzwh3ig89hj7k80cdcrsnbv5wvpi"; - iosevka-slab = "0mgrngn2g5i1s5285ds6x53gwl3ragdr3pkmp3kwk7m88jivx4n8"; - iosevka-ss01 = "0r0zn3dickzpkcqfdy6lw245301v8hqiy073bk7q7dykg7514wic"; - iosevka-ss02 = "05ifncnsy9bfb66qxpx57hkadq4vwa8bb5qki69skwfsfrfc217y"; - iosevka-ss03 = "1hh1x10v3igagaa70xmw7hhfa6jm99pn46w4wlgv0ydfz441hfcd"; - iosevka-ss04 = "13cwjc472gqvkz72lxx82xp9ka71ycdid7zldl5r38sakjqymxcv"; - iosevka-ss05 = "0y4zgda1n4shcqrw950w55jmlh71mi7fc9g6fjjb1ik5v227k8h3"; - iosevka-ss06 = "15xcg3dqjqb9hzzaf7pvq7lnn0qrvk828xy9ngq9xznhdzzlh0s3"; - iosevka-ss07 = "1w2lyqcvcn6k70a00xdi650rsw91lb8rgrbdpb92m4p3lr7b4vzg"; - iosevka-ss08 = "08b38c8vrvys8cxq3gqscr33ijm0wn6xnw6wjr21r8f6y2i1rhfp"; - iosevka-ss09 = "1mgp38665llp1rqlmzr62z5vxxlwl5g75mdd9qf8zah17babi88p"; - iosevka-ss10 = "06f8mkxfrxl7kkph9ljzsgsxf5qlnw0ggkb2bv518ajpycc9g77c"; - iosevka-ss11 = "17nxf0215s8vgyicbj6rhqia4hw5gsrljdk1jc5hd1yd50c8351q"; - iosevka-ss12 = "152f4bljjm3w49x4wfr1fr557pi4qpvgyk6icccrbig4r3idkqhg"; - iosevka-ss13 = "04kh77ry46gdgmp87p3nwbqmrkbwjjvfk2mrb43lw19vwmbax3aw"; - iosevka-ss14 = "1fln5kz531yp8gk447cw71xm9ddvw70dwyamjd9sl39vay32b534"; - iosevka-ss15 = "0iwy88pfxan94zhvjnqxsh9i39r1nzi0hc0q4xi1mqyaygml3y6c"; - iosevka-ss16 = "1xxir89gqbcqms158c1znlnbky39safjcgzyd1qvr5w78w7dz5gc"; - iosevka-ss17 = "0dac2m9vxif6s02ryzx9kw9j87dgm53cjjzh4h6bqm3wqjmy3hgy"; - iosevka-ss18 = "0igj1k7jm1xk649hpn2h3c1n9j8dcb7l5kvr6wb97r8w2s5kiz20"; - sgr-iosevka = "1f6c3sd022ss0m8myb03fpr03d4mmw6yapgamkp8xbskxny11sik"; - sgr-iosevka-aile = "02h8bd89pxdalfd7ysybzr6lrga5vilwsdsmbl9f6c74pdxp9wsq"; - sgr-iosevka-curly = "015wqd61iww7q15hfp4ifk7yb8p2070v0vi1v7jb0zqgim7lky4g"; - sgr-iosevka-curly-slab = "132ixkvfny95nsmil4b68zyag2gg9dxsn7yzfdmzr6ld392a2gxn"; - sgr-iosevka-etoile = "0vgkf40q81bgcm2q8nb4z40lzvib50k5mmsardgwaigwlhsjpnr1"; - sgr-iosevka-fixed = "0y7jrly440k8dq5av6yx257wyvaprh4nr6a0axqd9v9h0kw27s00"; - sgr-iosevka-fixed-curly = "1xvjsnay8bqji6mw13llfmnyzrahqwyymwbalc9gdgxd85abdndm"; - sgr-iosevka-fixed-curly-slab = "0q2s371z6cgnh07g1svl2jn10655kn2wyill1w274sb8qvx972m7"; - sgr-iosevka-fixed-slab = "0q41blbalb9r40c56gci184nbp2nyvglbqyyr2rmv87c2qqvnzrj"; - sgr-iosevka-fixed-ss01 = "05lvvnfa35p2xa1j2ygbwzwmn5jj8djafm2ykjv17992ljs6zlns"; - sgr-iosevka-fixed-ss02 = "1c13rybqmzikjvq7m4nkjkl147m6w7i389r5a9vl3c8v281g89q8"; - sgr-iosevka-fixed-ss03 = "0wykv3wa18i53659avb4n0wirrbcrj24wslwx1g151an9vrfbixq"; - sgr-iosevka-fixed-ss04 = "11k74l40323q0bcz3zf4a7gnpgnf4j2rjrgqqla6nfmjkacbfngy"; - sgr-iosevka-fixed-ss05 = "0p78q0ik8m815shbac2pyw5yas25rbzw7r9abb94md1fh175csx5"; - sgr-iosevka-fixed-ss06 = "1rg0nagpf3nrgmnlmy3lvrr665492ygkdqaxi1js5hqnmy9xhsml"; - sgr-iosevka-fixed-ss07 = "0j2iiv6jzd9v4ggdj88hpyqhmf04rsq8jc6llg50mx6nr89y7fbf"; - sgr-iosevka-fixed-ss08 = "10zlla2qkr6xpvdchawlixfn3yxnakhi0lg3naskk0zj00vifxay"; - sgr-iosevka-fixed-ss09 = "1l0h7m292hi6613j9spfxpy25n74718s0b96sn8ycw3qbpjlybkm"; - sgr-iosevka-fixed-ss10 = "064hjwhi78a7lb3gn8s1ga6kw2sk5j1y38cqrmxizja76msw3cxm"; - sgr-iosevka-fixed-ss11 = "1adnn6fpkx20zfmip62csxrasfn0fs7gxv00q8wkd69chgzz7k6l"; - sgr-iosevka-fixed-ss12 = "1yqv5b8az0dxilvrabm82lkrnvn1x8z43jg1pfh6ykd49kgim5ma"; - sgr-iosevka-fixed-ss13 = "0vkxzb3b3r61z0k6rix6j9paw5kxgd5k3a76k3ri0mw6fnh3kzks"; - sgr-iosevka-fixed-ss14 = "111ck61z1bbcrgrryw3dc1ariicfs7brga8zzrs9angg8xwcdky9"; - sgr-iosevka-fixed-ss15 = "0hb4lh87f0dw7acra9w6j7r17lc9xpfjh8hkp5096fbjfffyn786"; - sgr-iosevka-fixed-ss16 = "1rq4s7rqj0nnkq1b94ahhlqma9x50kagndrfc8wxqz26x1na88a6"; - sgr-iosevka-fixed-ss17 = "1jz54ilc36q6z6s8xqffbrb9g2w6yhikwyr8hjvghb0imvwa99vi"; - sgr-iosevka-fixed-ss18 = "1nsbxq4m2h1vbwcl0zfwmfrd48brlrmi5cb1099ybqqp9lkrpddf"; - sgr-iosevka-slab = "15k6r7847al2wh9df0fzq04brn8scix5d0wwnbbnyy2p8hg8r0jk"; - sgr-iosevka-ss01 = "0yaw30j2wj0i876xkpvh3k76hyyjjbqqm3vfwqn0nahn83sk7lq9"; - sgr-iosevka-ss02 = "048bgm59gnk5qpxfpflj4q8iryjlcnybyaqcmdkwhklqyracqada"; - sgr-iosevka-ss03 = "151ai1pkiszrd1zrdviqd7701hqmp48gqkfn86xz4bw7p84qniyv"; - sgr-iosevka-ss04 = "03ih3c0n0ab3wkp9w6ngzn4x6fmn4z19p506r0fvkg0n8rcmx35v"; - sgr-iosevka-ss05 = "0zh9zb2vl5z2xc4j0ascv2ps6789ll9qgjmvd6hhb23rf540d371"; - sgr-iosevka-ss06 = "15wd5sni08ckpbqr8cnkiv9pwhnqp9jh70nl3wv93bwvyqzycx6p"; - sgr-iosevka-ss07 = "12lgjhqaqj8qag59xz49l0d2wb39aymigfknhxj72yjgqrv6nmli"; - sgr-iosevka-ss08 = "1f8g0rsdjpykq1061hxbk46wl6x7rr6n4n5mx0kxl0q0rry8zk29"; - sgr-iosevka-ss09 = "0zjn4wyldmynldinhiqadpw3mldi46vsnw3wgsq8w0j90hcz1rg8"; - sgr-iosevka-ss10 = "0bxyvm2xs1iqdpwv6vhz0zc6k6h1jd2xr9alc6jhavyzwzgwsrnq"; - sgr-iosevka-ss11 = "1fl2insp3i1q697pim7jbk569cx2dpv0ivs8q1sgk7kl86mq5k8m"; - sgr-iosevka-ss12 = "1h003xf0g5w6jmcl8882lmsi3ri0dqnayiq37rwlygbi3zhchgpi"; - sgr-iosevka-ss13 = "1r30r7inci5clyp7wxl5a8jcvanlipwwbx5nc7vwq8n7q48n3i0j"; - sgr-iosevka-ss14 = "0h2fqnlrg3f5hba7v2v2xnfp7z0cdipkgj9g1iyzr71r1fpm4wwi"; - sgr-iosevka-ss15 = "03kdf4lvg9x6g9130l4by4q5bh0fra3mpvyap29rs1gm47w0n84k"; - sgr-iosevka-ss16 = "0cmkw1654figbsj9biqcjh6x86dffhn10b05y0s4qlj1ackzpciz"; - sgr-iosevka-ss17 = "0iyi20lzswcshikqvxlmbf8wkyfs8xz8bjw6lxix81818skgavhx"; - sgr-iosevka-ss18 = "0m82akjnb1xkqissh86s3vhm1fbsy9wlkqabcfhk1jyhj3w2q3i8"; - sgr-iosevka-term = "0r1v50n1fjy40df16kjcv92ihnka9sb1h1lkwigvy12pp8df0fbw"; - sgr-iosevka-term-curly = "1hk42bsf157131smbxali2g681jwh4fynjhnswsd05k04p20lndp"; - sgr-iosevka-term-curly-slab = "092fx48mf26zpaj2qvbbhr2qi3bpqhyhynznffdjadzdqnsqyxyy"; - sgr-iosevka-term-slab = "0kndz8q7him9wkfiaxkjfjkqsmsqg5y6n9bmzh0gvz304019s1gz"; - sgr-iosevka-term-ss01 = "0awxqg4r5pq7kcvqjabsgzjagmf66ads8bp0w1bw27w6f5vc21hf"; - sgr-iosevka-term-ss02 = "1zfvjw32z8kf25j9gvdq7aa4p94s4r8vvh7kncnxcm2prrc40fvc"; - sgr-iosevka-term-ss03 = "122qm2s6w6clw4fgy59cj8p54mlyavyfr81g06zjgy46i8skrpsw"; - sgr-iosevka-term-ss04 = "14y4rarp17qm0qy59rshhd581pdn1niqx6h2y74yyc6kms6q94rn"; - sgr-iosevka-term-ss05 = "18cv0bl7ngb4gp5phzh77r8q0y863ym598px2n5jf00maaigfahc"; - sgr-iosevka-term-ss06 = "14rp2kd2b609ijhg8gmnc5sgjniwgbfkcnp5xa5m9bbshbjmikqn"; - sgr-iosevka-term-ss07 = "09sppprv46d62cyp0aw77p3wr6s514qzc5p3lb1qxiakic5gn2js"; - sgr-iosevka-term-ss08 = "02slv5va9yn09pcscmx6snjp2swjznrrhnwjf9fwi74siypza1xx"; - sgr-iosevka-term-ss09 = "0hdhsd1rkiqgz91x9kkn2rd37ya6q91qkyv3w5ry8flfffba421z"; - sgr-iosevka-term-ss10 = "13b29x2znqm8l3ydakc0sq5skr1mk4xjfikvayp5vc1a4krjyzwn"; - sgr-iosevka-term-ss11 = "15qq6lvf7mdnch20shsigrr7xk7qbgr2wz7qbqwyaidd1vlk57px"; - sgr-iosevka-term-ss12 = "09nyj7dcc7ldi7kn8scxjaszp8gxzdxq860zig1bpsjrssm20870"; - sgr-iosevka-term-ss13 = "0v28swz2dbg8kc2wx5h4llkki5i1rpdk5f6ip08xjzlb35bphwwk"; - sgr-iosevka-term-ss14 = "1q94pvfs2yqz8sjvpchs44w83rnf08v6njz27pz4da5g1v7qg4s2"; - sgr-iosevka-term-ss15 = "077cl1259xgfb26p67wih69vq2vw20ardq479jajc5r7cn2cbxia"; - sgr-iosevka-term-ss16 = "0fy1810yxi2faacdc1fsy0nlzh781fijs6l8kfsh2xb22sk2ydf2"; - sgr-iosevka-term-ss17 = "1m8jv2rvxsj0aj1lwz38radvq2fivx1qgivsaly2sf992lga5w3v"; - sgr-iosevka-term-ss18 = "0rm8ki7g0brwcxmidapyn5r2jd55n9hlx2prhzskgyph4ikmnmrh"; + iosevka = "1zdjwczfmb6swa4yza4nydhvspj9wvi1lvd4d9inr9ssc0ky0h0k"; + iosevka-aile = "15ahii9597g8p2m0abx3zha26093gsnihn66nm9l1jqrda8s3bfx"; + iosevka-curly = "1xqxzj9zxfxy3mpq9kjfzjxpi106qp6dq9x32vdfm192l2kcz4dq"; + iosevka-curly-slab = "0rp6p5v1jd4ihgkshmzm90b9i2kafz94ng2f0lxqrjkh88xg2qkz"; + iosevka-etoile = "1ml7wmkq7im97z9zgg184bw0a3wzk5rd10jx29ybb4hfklp5mpgk"; + iosevka-slab = "1dydq9pw0n9kj1nwbyrcb7cxsmjbs69fj91rnl9ayjp6fis2npfl"; + iosevka-ss01 = "0q26f6n986cs6bzbyqsd0rnk064cxyr7z6iskn1gbf3138cj1q2j"; + iosevka-ss02 = "1g93qx9b7l5fq5lbxjgvfxmzzmmplgd3cygc3kl7z0xdqfzqh735"; + iosevka-ss03 = "0vfg0qr0w22yq0igzm0wpd3gf74n2w1xsk7lpzsxcrpljzmjrry5"; + iosevka-ss04 = "10phf294w91b4m259pgddpih5r9ys49fib419vnh0rcn3f3c0vmz"; + iosevka-ss05 = "074551ir5a45c7k00bfsbp162vc537xyqdqgi6h7j7lkhn7rfjvg"; + iosevka-ss06 = "09jn7lk0gc3ns3640g2ng2jh44g180kjcx4fcyacipx5sfwwhjaf"; + iosevka-ss07 = "18jn9png6jqh5g7883v50za44sa1h78ni8jmpzmfpnhhsvxfq6f2"; + iosevka-ss08 = "0drgk3r1p4pn5vvdjrms3vivzizd7jkpla40z0gvi7832cssxk0d"; + iosevka-ss09 = "0xynk2m5nhhlk34c2d3962mcz8mh7n2f64jd4n8l6v3mibcmjh8n"; + iosevka-ss10 = "1yygdiikbdklk7ddyg3mmvypcmwbm9iym63qvabv0n2dxm5fjylz"; + iosevka-ss11 = "0as42f552xdpla332sabrxf98l33rv17qzig8f2g38cvwhdp7wc1"; + iosevka-ss12 = "179499aa1yh5hp0zlwvbyfixi72qky59lba5hd9b53s81jxph778"; + iosevka-ss13 = "0dprpbcykq5a4gz9941vbiaj7l36xvwip19l1g0422ffg9yrlqvg"; + iosevka-ss14 = "04843xsmab4y3hxicpkv6ard7kynm6dhyxxsmyz0n3rvl0jk4krj"; + iosevka-ss15 = "1j0ljgpz3x5wkcj1jx8dnb5ccp1fcyg4i8p40cr01azmbxhwj5m5"; + iosevka-ss16 = "0gn6x6f03mccfq6lfglbfzxgg74v30k7nadqjlj08fsxp37iiqzc"; + iosevka-ss17 = "1qnh6bqz15h1xaxcqjsbiidaqbrjikc20fys5fwjflh213csy2n8"; + iosevka-ss18 = "0p85kp81ylm8fm5fgyp6sv9rcf8gvznpfgn7mbw26y1lx7gmh6xy"; + sgr-iosevka = "1g97vv4n020r8j9k4w7dzam2xvfqs80nbfvmxkswsnfg3kys1n58"; + sgr-iosevka-aile = "0ysds3663psv1nr6nyzwxm47vg02jhpgssm3lmdls4g07y93f1fl"; + sgr-iosevka-curly = "1kzclraj9ndcask13f4iwvf360zm7p78xqf645wbfa9h4rzd93l5"; + sgr-iosevka-curly-slab = "12y4fyf22mzrnbzl9785ffg6pqcgbdbss1hambf03av2cdvc7sfi"; + sgr-iosevka-etoile = "1d04q0wnsymfv3zklfz77yvq1xa1zlj1fi2ihljlzrlfw8ybn90c"; + sgr-iosevka-fixed = "0p6h9hhqbjn9y7dvf78fm0jy6wd884gh4cn4k6070v0psm5xp0y1"; + sgr-iosevka-fixed-curly = "0l4yd4p8gzsmxgfh90l7z2x6l8v56v5jwsyshq6jawc8xcbny3rb"; + sgr-iosevka-fixed-curly-slab = "13cg8by9j57r2vbh0anms61dcxvxrzf3yw91s1g6nmhllqd5aqrq"; + sgr-iosevka-fixed-slab = "03v8i2p2sww6p2dmzq1xqrrik2k1qz91xn9d9ww2zwz47hkgbysm"; + sgr-iosevka-fixed-ss01 = "1caliz8g63cny7zrq5gkan2366c381d2rl48jnqmmpij3zsx8axz"; + sgr-iosevka-fixed-ss02 = "01sgb5mrrry2nln0yfzm5z00x5rv28iav3xpww33xcrgwvvvxfp0"; + sgr-iosevka-fixed-ss03 = "076ayn5y5gxla7w9ildg445wlc2r36vfnhqim7wkphach9mqjn1j"; + sgr-iosevka-fixed-ss04 = "0x1bd9vy8a0afykb97yl669hsf5mn2gjm9ly5hlb3bnmxaw8dchj"; + sgr-iosevka-fixed-ss05 = "0f6yn9z3sv28ilx1j0sh0yw19m0kzi81razq7q601k7q4klzm7dw"; + sgr-iosevka-fixed-ss06 = "0qjsg1xl6x6355c5x2lakh5cbv1vjs1z1s13ikbqhv8wckklmbb0"; + sgr-iosevka-fixed-ss07 = "0z8yy005l4srqgi2sh64vj1238ydw04kg4vqzj612bmydp5r4vbj"; + sgr-iosevka-fixed-ss08 = "0dh9gr3qhpw2ap3j69nnsbiqi04y59rgvpwxgw2z8jcdksh7syal"; + sgr-iosevka-fixed-ss09 = "1lf4vi363rz7mchin262zwz21lpnp1k77v934858qyspc8fkgf1j"; + sgr-iosevka-fixed-ss10 = "0i7lkr892mq1nks2fsll2lhrzgad0q4hpvl4wafd2jx9wi21b158"; + sgr-iosevka-fixed-ss11 = "13p1z9x9yi064p1jh0gybrbv2np5ynyggmasf7259cs1l89fqci4"; + sgr-iosevka-fixed-ss12 = "1ydkj92f9nyyxhvcscxahnjp75pd66ps0flj09f8kk7lbs9vcx4f"; + sgr-iosevka-fixed-ss13 = "1gkzv8l298kyvgkil47d6gshjvjfdgr0chjhnkl7yqqmwwl23rn2"; + sgr-iosevka-fixed-ss14 = "0klm69qmirappqijsl0si5yv8pk56k5d5jqpib8l0scb99pxvi2y"; + sgr-iosevka-fixed-ss15 = "0ym7zdvh0g52jkpijls572hjyv8jk47srq4nqvig0qygkx3w24nf"; + sgr-iosevka-fixed-ss16 = "0clhkh8lxn0garhsj9jca2iw173gihac10bcm12i0mq8ca8qxrhl"; + sgr-iosevka-fixed-ss17 = "1225rd8w2c65zvmq5gbg2f8n7bnmqdjf9g0cjqi42gwns840k81h"; + sgr-iosevka-fixed-ss18 = "0r47grjpbdk6ccrdvdz7vsln5923wl4xb4xcm3q803p8sfb4h38x"; + sgr-iosevka-slab = "1f96ml19ph39bnkdfrag84z1w7d6r7l5sk8vl2gw55hqwb9h423y"; + sgr-iosevka-ss01 = "167s8175qcq544d0j21rwrjispdrw8q41p3dfd9kri4x3cbgqndy"; + sgr-iosevka-ss02 = "0hj18h8hz18ggqm4mj4cdqhp7aa2w8p647y2my5rh989k8y5pgw8"; + sgr-iosevka-ss03 = "012mxn8azidrjq39jvvscmlazvx4lv94ibvfp3acfp7chhgshi4g"; + sgr-iosevka-ss04 = "1g1wi82baa71p1596430akdd0hhxzp7fa1gimjkvl871h7nal5r3"; + sgr-iosevka-ss05 = "1s1jmr4aam0584gy9jbk8fxymn2y9vfz6yd12bkd7l8m73y819bw"; + sgr-iosevka-ss06 = "1bqrm6g8q77g8b9b14dbwnj9gc0g68niw32fw7fjzpypgsgwh5y3"; + sgr-iosevka-ss07 = "0mw4qmfnjdncyk8r30km1pvcmv46dlps6zkq7c8szy2lsnlshspf"; + sgr-iosevka-ss08 = "0kikssw16p3bnlm796fbdkzl5vwm496lz4j9c5ms9hgpk7j1qxcc"; + sgr-iosevka-ss09 = "02vrzi199qszm10jmnijx786lmkcx0npfaachp51n9lpsvs23i64"; + sgr-iosevka-ss10 = "138lhzjxq9ar8dmm1cdjdvdkn3blhi423hcvhr6wfxps629xvlw2"; + sgr-iosevka-ss11 = "08ry7fbfswri4vq20513lj4xfjv70dqvs8aadqx0gwkcknmdawq2"; + sgr-iosevka-ss12 = "1nlzzxkp2gn5hx2js33c86w7823ircpi2d2s63a6irgqwzm0dc53"; + sgr-iosevka-ss13 = "0yrzqhns7a82fpwl7gndjpaln3251s89vc91rc1lc4rcmqzpjdfy"; + sgr-iosevka-ss14 = "1km2bvnrp5g1axfl59agh9qrkdayh5h23pdmf6dxw8a8s3sknf7w"; + sgr-iosevka-ss15 = "0fym1sgf375d8y8qbgyjx9x2y5h0iidnbd7fxqk1jdzcm4ndnrv5"; + sgr-iosevka-ss16 = "0h5rcvqw1xwvhkcdb082zbd3hl0ymnv8nxvf9g8lprpwb222ag8b"; + sgr-iosevka-ss17 = "1s7p4ydpgkhxfjsp3vqn059l43gpxmlf54pawl6i53ldzgjsfx1a"; + sgr-iosevka-ss18 = "0rpfvl3yffpg5c3155pmswpg31qj2wd2zh1k42r5k84ws9l9ns7d"; + sgr-iosevka-term = "0i2bxrfpvcg4agrsj6d6dfiim2lz9p7xm17b5928xbk5cxl08v9b"; + sgr-iosevka-term-curly = "0k0zqfkkjk8fi88gqnr44hcbm3y4wpx4p99dqv51ssra7ggqbs5z"; + sgr-iosevka-term-curly-slab = "1krc6mva1mif6xlnfxxqnxxfaljszg3zkivgvmbkaqgb7y39ph87"; + sgr-iosevka-term-slab = "0r4f29218l2mql9bld488bdmzzgqav81i757vfj6qrc5m6w6znah"; + sgr-iosevka-term-ss01 = "1hvi8xc0zagx267vfhwymnyq5y1bb9p6d7vs5nijrkq7hlkyl8j3"; + sgr-iosevka-term-ss02 = "0pha6nz5736ygv6mhf6xk5kp29wxg5sn336rh45w3q9dh3df2bh0"; + sgr-iosevka-term-ss03 = "169lxbrr6i40cpa45381r04q0q8vgmhaypdzp30lg8gm69wpgs87"; + sgr-iosevka-term-ss04 = "0273cinikxp1xrxzcs0dn51xsi1h59yw7pdvaciqys62vb09cai8"; + sgr-iosevka-term-ss05 = "0rax2nwzgy9pmw4qld2spfpsv98vs4mpqz0zw6zr1dd6jdhzvr3b"; + sgr-iosevka-term-ss06 = "1r2ja3idf68kvsk7r3mjx2zqjdx41rvsb9xhxnp9llga51r3y4f7"; + sgr-iosevka-term-ss07 = "0rb1wq206p4g6i5v32x0y2lr1vs93qg5hfichbpi3bdjjpwlvg10"; + sgr-iosevka-term-ss08 = "1bsnmvdabnrj65s9d9i0s3q4zn1b2w2xvsqsjjgs3iwsbhy5b7n3"; + sgr-iosevka-term-ss09 = "1vm3jkv58n1zf96hgd28mrqls23zdk8cpml9wvmlj7p9y7x0qcxs"; + sgr-iosevka-term-ss10 = "0120gip4r40dzmc5vpl9avhzyfh16w0vdqw8ks259arcd72s0j4v"; + sgr-iosevka-term-ss11 = "14rf4h9zdnvkjsvwcikmgpnlpypk1qpdld1sw5wf1drbarpxynkl"; + sgr-iosevka-term-ss12 = "0g6rrsz0fc2szjxp4hxsw0ji4vcdhq5qx32hq83is2iqkkbylsz9"; + sgr-iosevka-term-ss13 = "19nk2wn13xnacih8qydxsjcpqwaqyklc6dsrx9b2rv7x8ksxyzdp"; + sgr-iosevka-term-ss14 = "16cjsfk5gn77f4h5g29cx5jj3zrxcl26izyivs5n161xvrq95inb"; + sgr-iosevka-term-ss15 = "07y306f40dmfdzzgfk2mmq3aipwzqcsff7yjcd3g9hn6cznn85jq"; + sgr-iosevka-term-ss16 = "0lbmqlsd7zlrfy9fxrj6ngnw2lwvv437z3ibw33qgch1vv4qz4yz"; + sgr-iosevka-term-ss17 = "08w4x5dd7klnafp6ifnd61m1s3q9ncbr1llx8ywa00s1dfxxsc0f"; + sgr-iosevka-term-ss18 = "0b2vxkc8c2jmpxlvj2gdy2ghygsiifrp4pivmpgp3amwa913smsk"; } diff --git a/third_party/nixpkgs/pkgs/data/fonts/profont/default.nix b/third_party/nixpkgs/pkgs/data/fonts/profont/default.nix index da12347af0..e201d643af 100644 --- a/third_party/nixpkgs/pkgs/data/fonts/profont/default.nix +++ b/third_party/nixpkgs/pkgs/data/fonts/profont/default.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation { version = "2019-11"; # Note: stripRoot doesn't work because the archive - # constains the metadata directory `__MACOSX`. + # contains the metadata directory `__MACOSX`. src = fetchzip { url = "https://tobiasjung.name/downloadfile.php?file=profont-x11.zip"; sha256 = "12dbm87wvcpmn7nzgzwlk45cybp091diara8blqm6129ps27z6kb"; diff --git a/third_party/nixpkgs/pkgs/data/fonts/sil-abyssinica/default.nix b/third_party/nixpkgs/pkgs/data/fonts/sil-abyssinica/default.nix index 7cefdf0776..b61af144dc 100644 --- a/third_party/nixpkgs/pkgs/data/fonts/sil-abyssinica/default.nix +++ b/third_party/nixpkgs/pkgs/data/fonts/sil-abyssinica/default.nix @@ -1,12 +1,12 @@ { fetchzip, lib }: let - version = "2.100"; + version = "2.200"; in fetchzip rec { name = "sil-abyssinica-${version}"; url = "https://software.sil.org/downloads/r/abyssinica/AbyssinicaSIL-${version}.zip"; - sha256 = "sha256-06olbIdSlhJ4hgblzzabqIs57FpsyWIdPDFXb9vK31A="; + sha256 = "sha256-Kvswqzw8remcu36QaVjeyk03cR4wW5BKQMDihiaxJoE="; postFetch = '' rm -rf $out/web diff --git a/third_party/nixpkgs/pkgs/data/fonts/smiley-sans/default.nix b/third_party/nixpkgs/pkgs/data/fonts/smiley-sans/default.nix new file mode 100644 index 0000000000..3bef9608b4 --- /dev/null +++ b/third_party/nixpkgs/pkgs/data/fonts/smiley-sans/default.nix @@ -0,0 +1,29 @@ +{ lib, stdenvNoCC, fetchzip }: + +stdenvNoCC.mkDerivation rec { + pname = "smiley-sans"; + version = "1.0.0"; + + src = fetchzip { + url = "https://github.com/atelier-anchor/smiley-sans/releases/download/v${version}/smiley-sans-v${version}.zip"; + sha256 = "sha256-LE0CZkWiXjyuiEk316ABCNQL9n5GID8CipjBIu2o6uk="; + stripRoot = false; + }; + + installPhase = '' + runHook preInstall + install -Dm644 -t $out/share/fonts/opentype *.otf + install -Dm644 -t $out/share/fonts/truetype *.ttf + install -Dm644 -t $out/share/fonts/woff2 *.woff2 + runHook postInstall + ''; + + meta = with lib; { + description = "A condensed and oblique Chinese typeface seeking a visual balance between the humanist and the geometric"; + homepage = "https://atelier-anchor.com/typefaces/smiley-sans/"; + changelog = "https://github.com/atelier-anchor/smiley-sans/blob/main/CHANGELOG.md"; + license = licenses.ofl; + maintainers = with maintainers; [ candyc1oud ]; + platforms = platforms.all; + }; +} diff --git a/third_party/nixpkgs/pkgs/data/fonts/tamzen/default.nix b/third_party/nixpkgs/pkgs/data/fonts/tamzen/default.nix index 8fcfe69429..f589455e98 100644 --- a/third_party/nixpkgs/pkgs/data/fonts/tamzen/default.nix +++ b/third_party/nixpkgs/pkgs/data/fonts/tamzen/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Bitmapped programming font based on Tamsyn"; longDescription = '' - Tamzen is a monospace bitmap font. It is programatically forked + Tamzen is a monospace bitmap font. It is programmatically forked from Tamsyn version 1.11, which backports glyphs from older versions while deleting deliberately empty glyphs to allow secondary/fallback fonts to provide real glyphs at those codepoints. diff --git a/third_party/nixpkgs/pkgs/data/icons/fluent-icon-theme/default.nix b/third_party/nixpkgs/pkgs/data/icons/fluent-icon-theme/default.nix index 3624f4b1b3..e7553b4b74 100644 --- a/third_party/nixpkgs/pkgs/data/icons/fluent-icon-theme/default.nix +++ b/third_party/nixpkgs/pkgs/data/icons/fluent-icon-theme/default.nix @@ -6,12 +6,13 @@ , jdupes , roundedIcons ? false , blackPanelIcons ? false +, allColorVariants ? false , colorVariants ? [ ] , }: let pname = "Fluent-icon-theme"; in -lib.checkListOfEnum "${pname}: available color variants" [ "standard" "green" "grey" "orange" "pink" "purple" "red" "yellow" "teal" "all" ] colorVariants +lib.checkListOfEnum "${pname}: available color variants" [ "standard" "green" "grey" "orange" "pink" "purple" "red" "yellow" "teal" ] colorVariants stdenvNoCC.mkDerivation rec { inherit pname; @@ -43,10 +44,11 @@ stdenvNoCC.mkDerivation rec { ./install.sh --dest $out/share/icons \ --name Fluent \ ${builtins.toString colorVariants} \ + ${lib.optionalString allColorVariants "--all"} \ ${lib.optionalString roundedIcons "--round"} \ ${lib.optionalString blackPanelIcons "--black"} - jdupes --link-soft --recurse $out/share + jdupes --quiet --link-soft --recurse $out/share runHook postInstall ''; diff --git a/third_party/nixpkgs/pkgs/data/icons/nordzy-cursor-theme/default.nix b/third_party/nixpkgs/pkgs/data/icons/nordzy-cursor-theme/default.nix index ee18fe2877..394626cec3 100644 --- a/third_party/nixpkgs/pkgs/data/icons/nordzy-cursor-theme/default.nix +++ b/third_party/nixpkgs/pkgs/data/icons/nordzy-cursor-theme/default.nix @@ -5,24 +5,18 @@ stdenvNoCC.mkDerivation rec { pname = "nordzy-cursor-theme"; - version = "0.1.0"; + version = "0.6.0"; src = fetchFromGitHub { owner = "alvatip"; repo = "Nordzy-cursors"; rev = "v${version}"; - sha256 = "XabfKFyeII7Xl+ozzpPnc4xFH4B7GzCTLq4M1QPSZPw="; + sha256 = "sha256-q9PEEyxejRQ8UCwbqsfOCL7M70pLCOLyCx8gEFmZkWA="; }; installPhase = '' mkdir -p $out/share/icons - - cp -r nordzy-dark/ $out/share/icons/Nordzy-cursors - mv $out/share/icons/Nordzy-cursors/index.theme $out/share/icons/Nordzy-cursors/cursor.theme - mv $out/share/icons/Nordzy-cursors/Nordzy-cursors $out/share/icons/Nordzy-cursors/cursors - cp -r nordzy-white/ $out/share/icons/Nordzy-white-cursors - mv $out/share/icons/Nordzy-white-cursors/index.theme $out/share/icons/Nordzy-white-cursors/cursor.theme - mv $out/share/icons/Nordzy-white-cursors/Nordzy-white-cursors $out/share/icons/Nordzy-white-cursors/cursors + cp -r Nordzy-cursors{,-white,-lefthand} $out/share/icons ''; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/data/misc/cacert/update.sh b/third_party/nixpkgs/pkgs/data/misc/cacert/update.sh index 9ad5ede0f7..d578102ad5 100755 --- a/third_party/nixpkgs/pkgs/data/misc/cacert/update.sh +++ b/third_party/nixpkgs/pkgs/data/misc/cacert/update.sh @@ -1,7 +1,7 @@ #!/usr/bin/env nix-shell #!nix-shell -i bash -p nix common-updater-scripts jq -# Build both the cacert package and an overriden version where we use the source attribute of NSS. +# Build both the cacert package and an overridden version where we use the source attribute of NSS. # Cacert and NSS are both from the same upstream sources. They are decoupled as # the cacert output only cares about a few infrequently changing files in the # sources while the NSS source code changes frequently. diff --git a/third_party/nixpkgs/pkgs/data/misc/clash-geoip/default.nix b/third_party/nixpkgs/pkgs/data/misc/clash-geoip/default.nix index 31d7384976..241b209d9e 100644 --- a/third_party/nixpkgs/pkgs/data/misc/clash-geoip/default.nix +++ b/third_party/nixpkgs/pkgs/data/misc/clash-geoip/default.nix @@ -1,23 +1,27 @@ -{ lib, stdenv, fetchurl }: +{ lib, stdenvNoCC, fetchurl, nix-update-script }: -stdenv.mkDerivation rec { +stdenvNoCC.mkDerivation rec { pname = "clash-geoip"; - version = "20220912"; + version = "20221212"; - src = ./.; - - data = fetchurl { + src = fetchurl { url = "https://github.com/Dreamacro/maxmind-geoip/releases/download/${version}/Country.mmdb"; - sha256 = "sha256-YIQjuWbizheEE9kgL+hBS1GAGf2PbpaW5mu/lim9Q9A"; + sha256 = "sha256-pApPPRIvG8qak5chupTN2u1IUKANXtkcEMlSAPedjH4="; }; + dontUnpack = true; + installPhase = '' runHook preInstall mkdir -p $out/etc/clash - install -Dm 0644 $data -D $out/etc/clash/Country.mmdb + install -Dm 0644 $src -D $out/etc/clash/Country.mmdb runHook postInstall ''; + passthru = { + updateScript = nix-update-script { }; + }; + meta = with lib; { description = "A GeoLite2 data created by MaxMind"; homepage = "https://github.com/Dreamacro/maxmind-geoip"; diff --git a/third_party/nixpkgs/pkgs/data/misc/dtv-scan-tables/default.nix b/third_party/nixpkgs/pkgs/data/misc/dtv-scan-tables/default.nix new file mode 100644 index 0000000000..741823871f --- /dev/null +++ b/third_party/nixpkgs/pkgs/data/misc/dtv-scan-tables/default.nix @@ -0,0 +1,32 @@ +{ lib +, stdenv +, fetchFromGitHub +, v4l-utils +}: + +stdenv.mkDerivation rec { + pname = "dtv-scan-tables"; + version = "20221027"; + + src = fetchFromGitHub { + owner = "tvheadend"; + repo = "dtv-scan-tables"; + rev = "2a3dbfbab129c00d3f131c9c2f06b2be4c06fec6"; + hash = "sha256-bJ+naUs3TDFul4PmpnWYld3j1Se+1X6U9jnECe3sno0="; + }; + + nativeBuildInputs = [ + v4l-utils + ]; + + installFlags = [ + "DATADIR=$(out)" + ]; + + meta = with lib; { + description = "Digital TV scan tables"; + homepage = "https://github.com/tvheadend/dtv-scan-tables"; + license = with licenses; [ gpl2Only lgpl21Only ]; + maintainers = with maintainers; [ ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/data/misc/hackage/pin.json b/third_party/nixpkgs/pkgs/data/misc/hackage/pin.json index 5b654ec8ad..4b049b7f66 100644 --- a/third_party/nixpkgs/pkgs/data/misc/hackage/pin.json +++ b/third_party/nixpkgs/pkgs/data/misc/hackage/pin.json @@ -1,6 +1,6 @@ { - "commit": "e2ccf8a8796c9192280f796ce0f5d98ec783f856", - "url": "https://github.com/commercialhaskell/all-cabal-hashes/archive/e2ccf8a8796c9192280f796ce0f5d98ec783f856.tar.gz", - "sha256": "092g4pbxyhkw1isbib967v5aw16iqs3w5iqcicv1irr4rphsr06z", - "msg": "Update from Hackage at 2022-11-11T17:48:48Z" + "commit": "b88b3496b1b3beb0c706db8a39c0da3396d96f0b", + "url": "https://github.com/commercialhaskell/all-cabal-hashes/archive/b88b3496b1b3beb0c706db8a39c0da3396d96f0b.tar.gz", + "sha256": "0gs807cbyi6zyk9bvg5d3wx16575pmgv4j3m8hbz57aa5i71r0nv", + "msg": "Update from Hackage at 2022-12-24T13:11:25Z" } diff --git a/third_party/nixpkgs/pkgs/data/misc/v2ray-domain-list-community/default.nix b/third_party/nixpkgs/pkgs/data/misc/v2ray-domain-list-community/default.nix index 9fd794d9d5..3d44e34f2b 100644 --- a/third_party/nixpkgs/pkgs/data/misc/v2ray-domain-list-community/default.nix +++ b/third_party/nixpkgs/pkgs/data/misc/v2ray-domain-list-community/default.nix @@ -3,12 +3,12 @@ let generator = pkgsBuildBuild.buildGoModule rec { pname = "v2ray-domain-list-community"; - version = "20221130032508"; + version = "20221223102220"; src = fetchFromGitHub { owner = "v2fly"; repo = "domain-list-community"; rev = version; - sha256 = "sha256-1UkP88HGh0KBYaekskeQHkJh02veUYmATKJD/wy4erc="; + sha256 = "sha256-bvTNxJcogF3KxZbC8jW0PMIiJJZnzubWybDcNK7id8s="; }; vendorSha256 = "sha256-CCY3CgjA1w4svzmkaI2Jt272Rrt5UOt5sbVDAWRRfzk="; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/data/misc/v2ray-geoip/default.nix b/third_party/nixpkgs/pkgs/data/misc/v2ray-geoip/default.nix index 2842394f73..4cb78dcf7c 100644 --- a/third_party/nixpkgs/pkgs/data/misc/v2ray-geoip/default.nix +++ b/third_party/nixpkgs/pkgs/data/misc/v2ray-geoip/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "v2ray-geoip"; - version = "202212150047"; + version = "202212220043"; src = fetchFromGitHub { owner = "v2fly"; repo = "geoip"; - rev = "29c096b1285812a0a9a955b98ff2998c46f9b80a"; - sha256 = "sha256-44kP+4Bc7fwxNViWiKo7jLtUov+7k60v+7NF7CTkbjg="; + rev = "4a54320369805321b90c7c5ca4cdda4f12bdd295"; + sha256 = "sha256-PFbjzzjeCKL9aak45B+R5Y+H3fTBzdXpyEvvEEdInbQ="; }; installPhase = '' diff --git a/third_party/nixpkgs/pkgs/data/themes/adw-gtk3/default.nix b/third_party/nixpkgs/pkgs/data/themes/adw-gtk3/default.nix index c9159d505e..0685e5d5b6 100644 --- a/third_party/nixpkgs/pkgs/data/themes/adw-gtk3/default.nix +++ b/third_party/nixpkgs/pkgs/data/themes/adw-gtk3/default.nix @@ -30,9 +30,7 @@ stdenvNoCC.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/data/themes/adwaita-qt/default.nix b/third_party/nixpkgs/pkgs/data/themes/adwaita-qt/default.nix index 869c9beb9b..79690fa4e6 100644 --- a/third_party/nixpkgs/pkgs/data/themes/adwaita-qt/default.nix +++ b/third_party/nixpkgs/pkgs/data/themes/adwaita-qt/default.nix @@ -42,9 +42,7 @@ mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/data/themes/arc/default.nix b/third_party/nixpkgs/pkgs/data/themes/arc/default.nix index ef05338cf5..17089285f2 100644 --- a/third_party/nixpkgs/pkgs/data/themes/arc/default.nix +++ b/third_party/nixpkgs/pkgs/data/themes/arc/default.nix @@ -14,13 +14,13 @@ stdenv.mkDerivation rec { pname = "arc-theme"; - version = "20220405"; + version = "20221218"; src = fetchFromGitHub { owner = "jnsh"; repo = pname; rev = version; - sha256 = "sha256-CBj/SpBWH5xdNCQSJquqIntcmfARI7Cud76Tp8txXL4="; + sha256 = "sha256-7VmqsUCeG5GwmrVdt9BJj0eZ/1v+no/05KwGFb7E9ns="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/data/themes/fluent-gtk-theme/default.nix b/third_party/nixpkgs/pkgs/data/themes/fluent-gtk-theme/default.nix new file mode 100644 index 0000000000..3359e6e1b1 --- /dev/null +++ b/third_party/nixpkgs/pkgs/data/themes/fluent-gtk-theme/default.nix @@ -0,0 +1,76 @@ +{ lib +, stdenvNoCC +, fetchFromGitHub +, gitUpdater +, gnome-themes-extra +, gtk-engine-murrine +, jdupes +, sassc +, themeVariants ? [] # default: blue +, colorVariants ? [] # default: all +, sizeVariants ? [] # default: standard +, tweaks ? [] +}: + +let + pname = "fluent-gtk-theme"; + +in +lib.checkListOfEnum "${pname}: theme variants" [ "default" "purple" "pink" "red" "orange" "yellow" "green" "teal" "grey" "all" ] themeVariants +lib.checkListOfEnum "${pname}: color variants" [ "standard" "light" "dark" ] colorVariants +lib.checkListOfEnum "${pname}: size variants" [ "standard" "compact" ] sizeVariants +lib.checkListOfEnum "${pname}: tweaks" [ "solid" "float" "round" "blur" "noborder" "square" ] tweaks + +stdenvNoCC.mkDerivation rec { + inherit pname; + version = "2022-12-15"; + + src = fetchFromGitHub { + owner = "vinceliuice"; + repo = pname; + rev = version; + hash = "sha256-lGT6MIpc7cdAznZlbSJJ7aBzZPHucyfR8ZNMdJI0LP8="; + }; + + nativeBuildInputs = [ + jdupes + sassc + ]; + + buildInputs = [ + gnome-themes-extra + ]; + + propagatedUserEnvPkgs = [ + gtk-engine-murrine + ]; + + postPatch = '' + patchShebangs install.sh + ''; + + installPhase = '' + runHook preInstall + + name= HOME="$TMPDIR" ./install.sh \ + ${lib.optionalString (themeVariants != []) "--theme " + builtins.toString themeVariants} \ + ${lib.optionalString (colorVariants != []) "--color " + builtins.toString colorVariants} \ + ${lib.optionalString (sizeVariants != []) "--size " + builtins.toString sizeVariants} \ + ${lib.optionalString (tweaks != []) "--tweaks " + builtins.toString tweaks} \ + --dest $out/share/themes + + jdupes --quiet --link-soft --recurse $out/share + + runHook postInstall + ''; + + passthru.updateScript = gitUpdater { }; + + meta = with lib; { + description = "Fluent design gtk theme"; + homepage = "https://github.com/vinceliuice/Fluent-gtk-theme"; + license = licenses.gpl3Only; + platforms = platforms.unix; + maintainers = [ maintainers.romildo ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/data/themes/gruvbox-gtk-theme/default.nix b/third_party/nixpkgs/pkgs/data/themes/gruvbox-gtk-theme/default.nix new file mode 100644 index 0000000000..a221918ad1 --- /dev/null +++ b/third_party/nixpkgs/pkgs/data/themes/gruvbox-gtk-theme/default.nix @@ -0,0 +1,42 @@ +{ lib +, stdenvNoCC +, fetchFromGitHub +, gnome-themes-extra +, gtk-engine-murrine +}: +stdenvNoCC.mkDerivation rec { + pname = "gruvbox-gtk-theme"; + version = "unstable-2022-12-09"; + + src = fetchFromGitHub { + owner = "Fausto-Korpsvart"; + repo = "Gruvbox-GTK-Theme"; + rev = "c3172d8dcba66f4125a014d280d41e23f0b95cad"; + sha256 = "1411mjlcj1d6kw3d3h1w9zsr0a08bzl5nddkkbv7w7lf67jy9b22"; + }; + + propagatedUserEnvPkgs = [ + gtk-engine-murrine + ]; + + buildInputs = [ + gnome-themes-extra + ]; + + dontBuild = true; + + installPhase = '' + runHook preInstall + mkdir -p $out/share/themes + cp -a themes/* $out/share/themes + runHook postInstall + ''; + + meta = with lib; { + description = "A Gtk theme based on the Gruvbox colour pallete"; + homepage = "https://www.pling.com/p/1681313/"; + license = licenses.gpl3Only; + platforms = platforms.unix; + maintainers = [ maintainers.math-42 ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/desktops/cinnamon/cinnamon-common/default.nix b/third_party/nixpkgs/pkgs/desktops/cinnamon/cinnamon-common/default.nix index 99df416053..c0c63675cb 100644 --- a/third_party/nixpkgs/pkgs/desktops/cinnamon/cinnamon-common/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/cinnamon/cinnamon-common/default.nix @@ -151,6 +151,8 @@ stdenv.mkDerivation rec { sed "s|/usr/share/sounds|/run/current-system/sw/share/sounds|g" -i ./files/usr/share/cinnamon/cinnamon-settings/bin/SettingsWidgets.py + sed "s|/usr/share/%s|/run/current-system/sw/share/%s|g" -i ./files/usr/share/cinnamon/cinnamon-settings/modules/cs_themes.py + sed "s|\"upload-system-info\"|\"${xapp}/bin/upload-system-info\"|g" -i ./files/usr/share/cinnamon/cinnamon-settings/modules/cs_info.py sed "s|/usr/bin/cinnamon-screensaver-command|/run/current-system/sw/bin/cinnamon-screensaver-command|g" \ diff --git a/third_party/nixpkgs/pkgs/desktops/cinnamon/cinnamon-screensaver/default.nix b/third_party/nixpkgs/pkgs/desktops/cinnamon/cinnamon-screensaver/default.nix index dca6169b0d..981b6a5d45 100644 --- a/third_party/nixpkgs/pkgs/desktops/cinnamon/cinnamon-screensaver/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/cinnamon/cinnamon-screensaver/default.nix @@ -93,6 +93,13 @@ stdenv.mkDerivation rec { sed "s|/usr/share/locale|/run/current-system/sw/share/locale|g" -i ./src/cinnamon-screensaver-main.py ''; + preFixup = '' + # https://github.com/NixOS/nixpkgs/issues/101881 + gappsWrapperArgs+=( + --prefix XDG_DATA_DIRS : "${gnome.caribou}/share" + ) + ''; + meta = with lib; { homepage = "https://github.com/linuxmint/cinnamon-screensaver"; description = "The Cinnamon screen locker and screensaver program"; diff --git a/third_party/nixpkgs/pkgs/desktops/cinnamon/cinnamon-translations/default.nix b/third_party/nixpkgs/pkgs/desktops/cinnamon/cinnamon-translations/default.nix index 9dd2f9c94e..09bf133a92 100644 --- a/third_party/nixpkgs/pkgs/desktops/cinnamon/cinnamon-translations/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/cinnamon/cinnamon-translations/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "cinnamon-translations"; - version = "5.6.0"; + version = "5.6.1"; src = fetchFromGitHub { owner = "linuxmint"; repo = pname; rev = version; - hash = "sha256-ztHHqX0OuwSFGlxCoJhZXnUsMM0WrkwiQINgDVlb0XA="; + hash = "sha256-567xkQGLLhZtjAWXzW/MRiD14rrWeg0yvx97jtukRvc="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/desktops/cinnamon/default.nix b/third_party/nixpkgs/pkgs/desktops/cinnamon/default.nix index fbff8c60fa..f991c970bf 100644 --- a/third_party/nixpkgs/pkgs/desktops/cinnamon/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/cinnamon/default.nix @@ -12,6 +12,13 @@ lib.makeScope pkgs.newScope (self: with self; { installPhase = "mv svg $out/share/iso-flags-svg"; }); + # Extensions added here will be shipped by default + nemoExtensions = [ + folder-color-switcher + nemo-fileroller + nemo-python + ]; + # blueberry -> pkgs/tools/bluetooth/blueberry/default.nix bulky = callPackage ./bulky { }; cinnamon-common = callPackage ./cinnamon-common { }; @@ -24,7 +31,11 @@ lib.makeScope pkgs.newScope (self: with self; { cinnamon-session = callPackage ./cinnamon-session { }; cinnamon-settings-daemon = callPackage ./cinnamon-settings-daemon { }; cjs = callPackage ./cjs { }; + folder-color-switcher = callPackage ./folder-color-switcher { }; nemo = callPackage ./nemo { }; + nemo-fileroller = callPackage ./nemo-extensions/nemo-fileroller { }; + nemo-python = callPackage ./nemo-extensions/nemo-python { }; + nemo-with-extensions = callPackage ./nemo/wrapper.nix { }; mint-artwork = callPackage ./mint-artwork { }; mint-cursor-themes = callPackage ./mint-cursor-themes { }; mint-themes = callPackage ./mint-themes { }; diff --git a/third_party/nixpkgs/pkgs/desktops/cinnamon/folder-color-switcher/default.nix b/third_party/nixpkgs/pkgs/desktops/cinnamon/folder-color-switcher/default.nix new file mode 100644 index 0000000000..a3909b820b --- /dev/null +++ b/third_party/nixpkgs/pkgs/desktops/cinnamon/folder-color-switcher/default.nix @@ -0,0 +1,44 @@ +{ stdenvNoCC +, lib +, fetchFromGitHub +, gettext +}: + +stdenvNoCC.mkDerivation rec { + pname = "folder-color-switcher"; + version = "1.5.5"; + + src = fetchFromGitHub { + owner = "linuxmint"; + repo = pname; + # They don't really do tags, this is just a named commit. + rev = "5e0b768b3a5bf88a828a2489b9428997b797c1ed"; + sha256 = "sha256-DU75LM5v2/E/ZmqQgyiPsOOEUw9QQ/NXNtGDFzzYvyY="; + }; + + nativeBuildInputs = [ + gettext + ]; + + postPatch = '' + substituteInPlace usr/share/nemo-python/extensions/nemo-folder-color-switcher.py \ + --replace "/usr/share" "$out/share" + ''; + + installPhase = '' + runHook preInstall + + mkdir -p $out + mv usr/share $out + + runHook postInstall + ''; + + meta = with lib; { + homepage = "https://github.com/linuxmint/folder-color-switcher"; + description = "Change folder colors for Nemo and Caja"; + license = licenses.gpl3Only; + platforms = platforms.linux; + maintainers = teams.cinnamon.members; + }; +} diff --git a/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-fileroller/default.nix b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-fileroller/default.nix new file mode 100644 index 0000000000..7153ec0865 --- /dev/null +++ b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-fileroller/default.nix @@ -0,0 +1,52 @@ +{ stdenv +, lib +, fetchFromGitHub +, meson +, pkg-config +, ninja +, glib +, gtk3 +, nemo +, gnome +}: + +stdenv.mkDerivation rec { + pname = "nemo-fileroller"; + version = "5.6.1"; + + src = fetchFromGitHub { + owner = "linuxmint"; + repo = "nemo-extensions"; + rev = "nemo-fileroller-${version}"; + sha256 = "sha256-dPmAHuJ0ZRTAwhnMMZEu1e9+qZRYCnlaaoCdUP45W+s="; + }; + + sourceRoot = "${src.name}/nemo-fileroller"; + + nativeBuildInputs = [ + meson + pkg-config + ninja + ]; + + buildInputs = [ + glib + gtk3 + nemo + ]; + + postPatch = '' + substituteInPlace src/nemo-fileroller.c \ + --replace "file-roller" "${lib.getExe gnome.file-roller}" + ''; + + PKG_CONFIG_LIBNEMO_EXTENSION_EXTENSIONDIR = "${placeholder "out"}/${nemo.extensiondir}"; + + meta = with lib; { + homepage = "https://github.com/linuxmint/nemo-extensions/tree/master/nemo-fileroller"; + description = "Nemo file roller extension"; + license = licenses.gpl2Plus; + platforms = platforms.linux; + maintainers = teams.cinnamon.members; + }; +} diff --git a/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/default.nix b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/default.nix new file mode 100644 index 0000000000..bc43f2aa08 --- /dev/null +++ b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/default.nix @@ -0,0 +1,68 @@ +{ stdenv +, lib +, fetchFromGitHub +, meson +, pkg-config +, ninja +, glib +, gtk3 +, nemo +, python3 +, substituteAll +}: + +stdenv.mkDerivation rec { + pname = "nemo-python"; + version = "5.6.0"; + + src = fetchFromGitHub { + owner = "linuxmint"; + repo = "nemo-extensions"; + rev = version; + sha256 = "sha256-cxutiz5bc/dZ9D7XzvMWodWNYvNJPj+5IhJDPJwnb5I="; + }; + + sourceRoot = "${src.name}/nemo-python"; + + patches = [ + # Load extensions from NEMO_PYTHON_EXTENSION_DIR environment variable + # https://github.com/NixOS/nixpkgs/issues/78327 + ./load-extensions-from-env.patch + + # Required for pygobject_init (). + (substituteAll { + src = ./python-path.patch; + env = "${python3.pkgs.pygobject3}/${python3.sitePackages}"; + }) + ]; + + nativeBuildInputs = [ + meson + pkg-config + ninja + ]; + + buildInputs = [ + glib + gtk3 + nemo + python3 + python3.pkgs.pygobject3 + ]; + + postPatch = '' + # Tries to load libpython3.so via g_module_open (). + substituteInPlace meson.build \ + --replace "get_option('prefix'), get_option('libdir')" "'${python3}/lib'" + ''; + + PKG_CONFIG_LIBNEMO_EXTENSION_EXTENSIONDIR = "${placeholder "out"}/${nemo.extensiondir}"; + + meta = with lib; { + homepage = "https://github.com/linuxmint/nemo-extensions/tree/master/nemo-python"; + description = "Python bindings for the Nemo extension library"; + license = licenses.gpl2Plus; + platforms = platforms.linux; + maintainers = teams.cinnamon.members; + }; +} diff --git a/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/load-extensions-from-env.patch b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/load-extensions-from-env.patch new file mode 100644 index 0000000000..ad9a4abdc3 --- /dev/null +++ b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/load-extensions-from-env.patch @@ -0,0 +1,27 @@ +diff --git a/src/nemo-python.c b/src/nemo-python.c +index 8d2acdb..900811b 100644 +--- a/src/nemo-python.c ++++ b/src/nemo-python.c +@@ -255,6 +255,7 @@ nemo_module_initialize(GTypeModule *module) + { + gchar *user_extensions_dir; + const gchar *env_string; ++ const gchar *python_extensiondir; + + env_string = g_getenv("NEMO_PYTHON_DEBUG"); + if (env_string != NULL) +@@ -269,8 +270,12 @@ nemo_module_initialize(GTypeModule *module) + + all_types = g_array_new(FALSE, FALSE, sizeof(GType)); + +- // Look in the new global path, $DATADIR/nemo-python/extensions +- nemo_python_load_dir(module, PYTHON_EXTENSION_DIR); ++ // Look in NEMO_PYTHON_EXTENSION_DIR ++ python_extensiondir = g_getenv("NEMO_PYTHON_EXTENSION_DIR"); ++ if (python_extensiondir == NULL) { ++ python_extensiondir = PYTHON_EXTENSION_DIR; ++ } ++ nemo_python_load_dir(module, python_extensiondir); + + // Look in XDG_DATA_DIR, ~/.local/share/nemo-python/extensions + user_extensions_dir = g_build_filename(g_get_user_data_dir(), diff --git a/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/python-path.patch b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/python-path.patch new file mode 100644 index 0000000000..bf6db93385 --- /dev/null +++ b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo-extensions/nemo-python/python-path.patch @@ -0,0 +1,13 @@ +diff --git a/src/nemo-python.c b/src/nemo-python.c +index 8d2acdb..ee24143 100644 +--- a/src/nemo-python.c ++++ b/src/nemo-python.c +@@ -197,7 +197,7 @@ nemo_python_init_python (void) + } + + debug("Sanitize the python search path"); +- PyRun_SimpleString("import sys; sys.path = [path for path in sys.path if path]"); ++ PyRun_SimpleString("import sys; sys.path = [path for path in sys.path if path]; sys.path.append('@env@')"); + if (PyErr_Occurred()) + { + PyErr_Print(); diff --git a/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/default.nix b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/default.nix index 82cd30488c..ef5762cd14 100644 --- a/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/default.nix @@ -25,8 +25,6 @@ stdenv.mkDerivation rec { pname = "nemo"; version = "5.6.1"; - # TODO: add plugins support (see https://github.com/NixOS/nixpkgs/issues/78327) - src = fetchFromGitHub { owner = "linuxmint"; repo = pname; @@ -34,6 +32,17 @@ stdenv.mkDerivation rec { sha256 = "sha256-ztx3Y+n9Bpzuz06mbkis3kdlM/0JrOaMDbRF5glzkDE="; }; + patches = [ + # Load extensions from NEMO_EXTENSION_DIR environment variable + # https://github.com/NixOS/nixpkgs/issues/78327 + ./load-extensions-from-env.patch + + # Don't populate nemo actions from /run/current-system/sw/share + # They should only be loaded exactly once from $out/share + # https://github.com/NixOS/nixpkgs/issues/190781 + ./fix-nemo-actions-duplicate-menu-items.patch + ]; + outputs = [ "out" "dev" ]; buildInputs = [ @@ -63,12 +72,16 @@ stdenv.mkDerivation rec { "--localedir=${cinnamon-translations}/share/locale" ]; + # Taken from libnemo-extension.pc. + passthru.extensiondir = "lib/nemo/extensions-3.0"; + meta = with lib; { homepage = "https://github.com/linuxmint/nemo"; description = "File browser for Cinnamon"; license = [ licenses.gpl2 licenses.lgpl2 ]; platforms = platforms.linux; maintainers = teams.cinnamon.members; + mainProgram = "nemo"; }; } diff --git a/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/fix-nemo-actions-duplicate-menu-items.patch b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/fix-nemo-actions-duplicate-menu-items.patch new file mode 100644 index 0000000000..3a555774c4 --- /dev/null +++ b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/fix-nemo-actions-duplicate-menu-items.patch @@ -0,0 +1,48 @@ +diff --git a/libnemo-private/nemo-action-manager.c b/libnemo-private/nemo-action-manager.c +index 4dac198..b671421 100644 +--- a/libnemo-private/nemo-action-manager.c ++++ b/libnemo-private/nemo-action-manager.c +@@ -146,6 +146,8 @@ set_up_actions_directories (NemoActionManager *action_manager) + data_dirs = (gchar **) g_get_system_data_dirs (); + + for (i = 0; i < g_strv_length (data_dirs); i++) { ++ if (g_strcmp0 (data_dirs[i], "/run/current-system/sw/share") == 0) ++ continue; + path = g_build_filename (data_dirs[i], "nemo", "actions", NULL); + uri = g_filename_to_uri (path, NULL, NULL); + +diff --git a/src/nemo-action-config-widget.c b/src/nemo-action-config-widget.c +index fc4075e..6e1c837 100644 +--- a/src/nemo-action-config-widget.c ++++ b/src/nemo-action-config-widget.c +@@ -221,6 +221,8 @@ refresh_widget (NemoActionConfigWidget *widget) + data_dirs = (gchar **) g_get_system_data_dirs (); + + for (i = 0; i < g_strv_length (data_dirs); i++) { ++ if (g_strcmp0 (data_dirs[i], "/run/current-system/sw/share") == 0) ++ continue; + path = g_build_filename (data_dirs[i], "nemo", "actions", NULL); + populate_from_directory (widget, path); + g_clear_pointer (&path, g_free); +@@ -390,6 +392,8 @@ static void setup_dir_monitors (NemoActionConfigWidget *widget) + + guint i; + for (i = 0; i < g_strv_length (data_dirs); i++) { ++ if (g_strcmp0 (data_dirs[i], "/run/current-system/sw/share") == 0) ++ continue; + gchar *path = g_build_filename (data_dirs[i], "nemo", "actions", NULL); + try_monitor_path (widget, path); + g_free (path); +diff --git a/src/nemo-script-config-widget.c b/src/nemo-script-config-widget.c +index 3a2d349..b8a85b4 100644 +--- a/src/nemo-script-config-widget.c ++++ b/src/nemo-script-config-widget.c +@@ -288,6 +288,8 @@ static void setup_dir_monitors (NemoScriptConfigWidget *widget) + + guint i; + for (i = 0; i < g_strv_length (data_dirs); i++) { ++ if (g_strcmp0 (data_dirs[i], "/run/current-system/sw/share") == 0) ++ continue; + gchar *path = g_build_filename (data_dirs[i], "nemo", "actions", NULL); + try_monitor_path (widget, path); + g_free (path); diff --git a/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/load-extensions-from-env.patch b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/load-extensions-from-env.patch new file mode 100644 index 0000000000..610b3490ca --- /dev/null +++ b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/load-extensions-from-env.patch @@ -0,0 +1,40 @@ +diff --git a/libnemo-private/nemo-module.c b/libnemo-private/nemo-module.c +index 92bcff5..ecadcd8 100644 +--- a/libnemo-private/nemo-module.c ++++ b/libnemo-private/nemo-module.c +@@ -209,11 +209,16 @@ void + nemo_module_setup (void) + { + static gboolean initialized = FALSE; ++ const gchar *extensiondir = NULL; + + if (!initialized) { + initialized = TRUE; + +- load_module_dir (NEMO_EXTENSIONDIR); ++ extensiondir = g_getenv ("NEMO_EXTENSION_DIR"); ++ if (extensiondir == NULL) { ++ extensiondir = NEMO_EXTENSIONDIR; ++ } ++ load_module_dir (extensiondir); + + eel_debug_call_at_shutdown (free_module_objects); + } +diff --git a/src/nemo-extensions-list.c b/src/nemo-extensions-list.c +index 944fc5f..983c396 100644 +--- a/src/nemo-extensions-list.c ++++ b/src/nemo-extensions-list.c +@@ -129,7 +129,12 @@ module_get_extensions_for_type (GType type) + int + main (int argc, char *argv[]) + { +- populate_from_directory (NEMO_EXTENSIONDIR); ++ const gchar *extensiondir = NULL; ++ extensiondir = g_getenv ("NEMO_EXTENSION_DIR"); ++ if (extensiondir == NULL) { ++ extensiondir = NEMO_EXTENSIONDIR; ++ } ++ populate_from_directory (extensiondir); + + GList *nd_providers; + GList *l; diff --git a/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/wrapper.nix b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/wrapper.nix new file mode 100644 index 0000000000..7f7633d19a --- /dev/null +++ b/third_party/nixpkgs/pkgs/desktops/cinnamon/nemo/wrapper.nix @@ -0,0 +1,38 @@ +{ symlinkJoin +, lib +, makeWrapper +, nemo +, nemoExtensions +, extensions ? [ ] +, useDefaultExtensions ? true +}: + +let + selectedExtensions = extensions ++ (lib.optionals useDefaultExtensions nemoExtensions); +in +symlinkJoin { + name = "nemo-with-extensions-${nemo.version}"; + + paths = [ nemo ] ++ selectedExtensions; + + nativeBuildInputs = [ makeWrapper ]; + + postBuild = '' + for f in $(find $out/bin/ $out/libexec/ -type l -not -path "*/.*"); do + wrapProgram "$f" \ + --set "NEMO_EXTENSION_DIR" "$out/${nemo.extensiondir}" \ + --set "NEMO_PYTHON_EXTENSION_DIR" "$out/share/nemo-python/extensions" + done + + # Point to wrapped binary in all service files + for file in "share/dbus-1/services/nemo.FileManager1.service" \ + "share/dbus-1/services/nemo.service" + do + rm "$out/$file" + substitute "${nemo}/$file" "$out/$file" \ + --replace "${nemo}" "$out" + done + ''; + + inherit (nemo) meta; +} diff --git a/third_party/nixpkgs/pkgs/desktops/enlightenment/efl/default.nix b/third_party/nixpkgs/pkgs/desktops/enlightenment/efl/default.nix index fca2c591a7..a15975872d 100644 --- a/third_party/nixpkgs/pkgs/desktops/enlightenment/efl/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/enlightenment/efl/default.nix @@ -147,7 +147,7 @@ stdenv.mkDerivation rec { mesonFlags = [ "--buildtype=release" "-D build-tests=false" # disable build tests, which are not working - "-D ecore-imf-loaders-disabler=ibus,scim" # ibus is disabled by default, scim is not availabe in nixpkgs + "-D ecore-imf-loaders-disabler=ibus,scim" # ibus is disabled by default, scim is not available in nixpkgs "-D embedded-lz4=false" "-D fb=true" "-D network-backend=connman" diff --git a/third_party/nixpkgs/pkgs/desktops/enlightenment/terminology/default.nix b/third_party/nixpkgs/pkgs/desktops/enlightenment/terminology/default.nix index 12289f2fb2..9c2cabe7e8 100644 --- a/third_party/nixpkgs/pkgs/desktops/enlightenment/terminology/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/enlightenment/terminology/default.nix @@ -12,11 +12,11 @@ stdenv.mkDerivation rec { pname = "terminology"; - version = "1.12.1"; + version = "1.13.0"; src = fetchurl { url = "https://download.enlightenment.org/rel/apps/${pname}/${pname}-${version}.tar.xz"; - sha256 = "1aasddf2343qj798b5s8qwif3lxj4pyjax6fa9sfi6if9icdkkpq"; + sha256 = "FqN/7Ne71j7J3j7GwK8zHO531t/ag4obFXPW8phHTaU="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/desktops/gnome/apps/cheese/default.nix b/third_party/nixpkgs/pkgs/desktops/gnome/apps/cheese/default.nix index 4001e358e8..68d94abb33 100644 --- a/third_party/nixpkgs/pkgs/desktops/gnome/apps/cheese/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/gnome/apps/cheese/default.nix @@ -34,13 +34,13 @@ stdenv.mkDerivation rec { pname = "cheese"; - version = "43.alpha"; + version = "43.0"; outputs = [ "out" "man" "devdoc" ]; src = fetchurl { url = "mirror://gnome/sources/cheese/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "utrp972m+lch2regi4I3p15TJcDJpmlJj/VPdyFG5M8="; + sha256 = "dFdMSjwycyfxotbQs/k3vir7B6YVm21425wZLeZmfws="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/desktops/gnome/apps/gnome-music/default.nix b/third_party/nixpkgs/pkgs/desktops/gnome/apps/gnome-music/default.nix index 19db2cdf9f..445d667b83 100644 --- a/third_party/nixpkgs/pkgs/desktops/gnome/apps/gnome-music/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/gnome/apps/gnome-music/default.nix @@ -107,6 +107,6 @@ python3.pkgs.buildPythonApplication rec { description = "Music player and management application for the GNOME desktop environment"; maintainers = teams.gnome.members; license = licenses.gpl2Plus; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/third_party/nixpkgs/pkgs/desktops/gnome/core/baobab/default.nix b/third_party/nixpkgs/pkgs/desktops/gnome/core/baobab/default.nix index 8419aa17ea..c7ff70d260 100644 --- a/third_party/nixpkgs/pkgs/desktops/gnome/core/baobab/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/gnome/core/baobab/default.nix @@ -69,6 +69,6 @@ stdenv.mkDerivation rec { homepage = "https://wiki.gnome.org/Apps/DiskUsageAnalyzer"; license = licenses.gpl2Plus; maintainers = teams.gnome.members; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/third_party/nixpkgs/pkgs/desktops/gnome/core/dconf-editor/default.nix b/third_party/nixpkgs/pkgs/desktops/gnome/core/dconf-editor/default.nix index 7cf366b7dc..d6da42ab55 100644 --- a/third_party/nixpkgs/pkgs/desktops/gnome/core/dconf-editor/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/gnome/core/dconf-editor/default.nix @@ -73,6 +73,6 @@ stdenv.mkDerivation rec { homepage = "https://wiki.gnome.org/Apps/DconfEditor"; license = licenses.gpl3Plus; maintainers = teams.gnome.members; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/third_party/nixpkgs/pkgs/desktops/gnome/core/evolution-data-server/default.nix b/third_party/nixpkgs/pkgs/desktops/gnome/core/evolution-data-server/default.nix index 3b0a5caa59..bdde8160ca 100644 --- a/third_party/nixpkgs/pkgs/desktops/gnome/core/evolution-data-server/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/gnome/core/evolution-data-server/default.nix @@ -45,6 +45,7 @@ , boost , protobuf , libiconv +, makeHardcodeGsettingsPatch }: stdenv.mkDerivation rec { @@ -150,8 +151,8 @@ stdenv.mkDerivation rec { ''; passthru = { - hardcodeGsettingsPatch = glib.mkHardcodeGsettingsPatch { - glib-schema-to-var = { + hardcodeGsettingsPatch = makeHardcodeGsettingsPatch { + schemaIdToVariableMapping = { "org.gnome.Evolution.DefaultSources" = "EDS"; "org.gnome.evolution.shell.network-config" = "EDS"; "org.gnome.evolution-data-server.addressbook" = "EDS"; diff --git a/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-calculator/default.nix b/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-calculator/default.nix index 59aafb530d..f84c9ab65a 100644 --- a/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-calculator/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-calculator/default.nix @@ -76,6 +76,6 @@ stdenv.mkDerivation rec { description = "Application that solves mathematical equations and is suitable as a default application in a Desktop environment"; maintainers = teams.gnome.members; license = licenses.gpl3Plus; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-dictionary/default.nix b/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-dictionary/default.nix index 6cdb8831c4..ebd9b58fd9 100644 --- a/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-dictionary/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-dictionary/default.nix @@ -80,6 +80,6 @@ stdenv.mkDerivation rec { description = "Dictionary is the GNOME application to look up definitions"; maintainers = teams.gnome.members; license = licenses.gpl2; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-font-viewer/default.nix b/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-font-viewer/default.nix index 5ebf4903cb..9a684cdaea 100644 --- a/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-font-viewer/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-font-viewer/default.nix @@ -61,6 +61,6 @@ stdenv.mkDerivation rec { homepage = "https://gitlab.gnome.org/GNOME/gnome-font-viewer"; maintainers = teams.gnome.members; license = licenses.gpl2Plus; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-terminal/default.nix b/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-terminal/default.nix index d344eec3c6..7ce5c4a67b 100644 --- a/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-terminal/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-terminal/default.nix @@ -91,9 +91,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "gnome.gnome-terminal"; - }; + updateScript = nix-update-script { }; tests = { test = nixosTests.terminal-emulators.gnome-terminal; diff --git a/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-themes-extra/default.nix b/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-themes-extra/default.nix index c7f70c76b2..efc5318fb5 100644 --- a/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-themes-extra/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/gnome/core/gnome-themes-extra/default.nix @@ -29,7 +29,7 @@ in stdenv.mkDerivation rec { ''; meta = with lib; { - platforms = platforms.linux; + platforms = platforms.unix; maintainers = teams.gnome.members; }; } diff --git a/third_party/nixpkgs/pkgs/desktops/gnome/extensions/paperwm/default.nix b/third_party/nixpkgs/pkgs/desktops/gnome/extensions/paperwm/default.nix index 4880a93129..7c63248dfe 100644 --- a/third_party/nixpkgs/pkgs/desktops/gnome/extensions/paperwm/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/gnome/extensions/paperwm/default.nix @@ -3,15 +3,15 @@ , fetchFromGitHub }: -stdenv.mkDerivation (finalAttrs: { +stdenv.mkDerivation { pname = "gnome-shell-extension-paperwm"; - version = "38.2"; + version = "unstable-2022-12-14"; src = fetchFromGitHub { owner = "paperwm"; repo = "PaperWM"; - rev = finalAttrs.version; - hash = "sha256-Unhz2+MOygOog6B5sOLtYTpdeodQH+/CMI93gC5nDvI="; + rev = "7c0863c944a02d4e8095034403bff6ade3579091"; + hash = "sha256-EN0sWW/NymRNKrApeFnqg8ax7Et4hr0gKZuvMF4kJYU="; }; dontConfigure = true; @@ -33,4 +33,4 @@ stdenv.mkDerivation (finalAttrs: { }; passthru.extensionUuid = "paperwm@hedning:matrix.org"; -}) +} diff --git a/third_party/nixpkgs/pkgs/desktops/gnustep/base/default.nix b/third_party/nixpkgs/pkgs/desktops/gnustep/base/default.nix index 7c6127a830..78c9bdd0ae 100644 --- a/third_party/nixpkgs/pkgs/desktops/gnustep/base/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/gnustep/base/default.nix @@ -19,6 +19,7 @@ gsmakeDerivation rec { url = "ftp://ftp.gnustep.org/pub/gnustep/core/${pname}-${version}.tar.gz"; sha256 = "05vjz19v1w7yb7hm8qrc41bqh6xd8in7sgg2p0h1vldyyaa5sh90"; }; + outputs = [ "out" "dev" "lib" ]; nativeBuildInputs = [ pkg-config ]; propagatedBuildInputs = [ aspell audiofile diff --git a/third_party/nixpkgs/pkgs/desktops/gnustep/make/setup-hook.sh b/third_party/nixpkgs/pkgs/desktops/gnustep/make/setup-hook.sh index 177a381100..83adfefc10 100644 --- a/third_party/nixpkgs/pkgs/desktops/gnustep/make/setup-hook.sh +++ b/third_party/nixpkgs/pkgs/desktops/gnustep/make/setup-hook.sh @@ -1,20 +1,24 @@ # this path is used by some packages to install additional makefiles export DESTDIR_GNUSTEP_MAKEFILES=$out/share/GNUstep/Makefiles -installFlagsArray=( \ - "GNUSTEP_INSTALLATION_DOMAIN=SYSTEM" \ - "GNUSTEP_SYSTEM_APPS=$out/lib/GNUstep/Applications" \ - "GNUSTEP_SYSTEM_ADMIN_APPS=$out/lib/GNUstep/Applications" \ - "GNUSTEP_SYSTEM_WEB_APPS=$out/lib/GNUstep/WebApplications" \ - "GNUSTEP_SYSTEM_TOOLS=$out/bin" \ - "GNUSTEP_SYSTEM_ADMIN_TOOLS=$out/sbin" \ - "GNUSTEP_SYSTEM_LIBRARY=$out/lib/GNUstep" \ - "GNUSTEP_SYSTEM_HEADERS=$out/include" \ - "GNUSTEP_SYSTEM_LIBRARIES=$out/lib" \ - "GNUSTEP_SYSTEM_DOC=$out/share/GNUstep/Documentation" \ - "GNUSTEP_SYSTEM_DOC_MAN=$out/share/man" \ - "GNUSTEP_SYSTEM_DOC_INFO=$out/share/info" \ -) +addGnustepInstallFlags() { + installFlagsArray=( \ + "GNUSTEP_INSTALLATION_DOMAIN=SYSTEM" \ + "GNUSTEP_SYSTEM_APPS=${!outputLib}/lib/GNUstep/Applications" \ + "GNUSTEP_SYSTEM_ADMIN_APPS=${!outputLib}/lib/GNUstep/Applications" \ + "GNUSTEP_SYSTEM_WEB_APPS=${!outputLib}/lib/GNUstep/WebApplications" \ + "GNUSTEP_SYSTEM_TOOLS=${!outputBin}/bin" \ + "GNUSTEP_SYSTEM_ADMIN_TOOLS=${!outputBin}/sbin" \ + "GNUSTEP_SYSTEM_LIBRARY=${!outputLib}/lib/GNUstep" \ + "GNUSTEP_SYSTEM_HEADERS=${!outputInclude}/include" \ + "GNUSTEP_SYSTEM_LIBRARIES=${!outputLib}/lib" \ + "GNUSTEP_SYSTEM_DOC=${!outputDoc}/share/GNUstep/Documentation" \ + "GNUSTEP_SYSTEM_DOC_MAN=${!outputMan}/share/man" \ + "GNUSTEP_SYSTEM_DOC_INFO=${!outputInfo}/share/info" \ + ) +} + +preInstallPhases+=" addGnustepInstallFlags" addEnvVars() { local filename diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/appcenter/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/appcenter/default.nix index a80ecc078f..6516db101e 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/appcenter/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/appcenter/default.nix @@ -70,9 +70,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-calculator/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-calculator/default.nix index ac133fa54d..b8c4c20350 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-calculator/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-calculator/default.nix @@ -45,9 +45,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-calendar/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-calendar/default.nix index 404935756d..8f38558e93 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-calendar/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-calendar/default.nix @@ -71,9 +71,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-camera/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-camera/default.nix index b967341c46..ed0c6bd918 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-camera/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-camera/default.nix @@ -60,9 +60,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-code/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-code/default.nix index 8f04aaab27..4a33fc2e04 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-code/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-code/default.nix @@ -85,9 +85,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-feedback/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-feedback/default.nix index 532159cd70..9f97fd94e5 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-feedback/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-feedback/default.nix @@ -59,9 +59,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-files/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-files/default.nix index bc91455fe3..a558664862 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-files/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-files/default.nix @@ -1,6 +1,7 @@ { lib , stdenv , fetchFromGitHub +, fetchpatch , nix-update-script , pkg-config , meson @@ -39,6 +40,15 @@ stdenv.mkDerivation rec { sha256 = "sha256-pJFeMG2aGaMkS00fSoRlMR2YSg5YzwqwaQT8G7Gk5S4="; }; + patches = [ + # Ensure special user directory icon used for bookmark + # https://github.com/elementary/files/pull/2106 + (fetchpatch { + url = "https://github.com/elementary/files/commit/00b1c2a975aeab378ed6eb1d90c8988f82596add.patch"; + sha256 = "sha256-F/Vk7dg57uBBMO4WOJ/7kKbRNMZuWZ3QfrBfEIBozbw="; + }) + ]; + nativeBuildInputs = [ desktop-file-utils meson @@ -73,9 +83,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-iconbrowser/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-iconbrowser/default.nix index 8a0ff75f90..69d52292f2 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-iconbrowser/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-iconbrowser/default.nix @@ -59,9 +59,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-mail/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-mail/default.nix index 879f1f8bd9..c984824a8c 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-mail/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-mail/default.nix @@ -73,9 +73,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-music/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-music/default.nix index dbc96fe02d..b38e315ac7 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-music/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-music/default.nix @@ -64,9 +64,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-photos/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-photos/default.nix index 218a89a7d5..8a1017cfae 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-photos/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-photos/default.nix @@ -86,9 +86,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-screenshot/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-screenshot/default.nix index 8418091fb4..b41dbaaae8 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-screenshot/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-screenshot/default.nix @@ -51,9 +51,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-tasks/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-tasks/default.nix index cd82dba99b..683b4a75ac 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-tasks/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-tasks/default.nix @@ -61,9 +61,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-terminal/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-terminal/default.nix index 8019389077..c1cfe8d63c 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-terminal/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-terminal/default.nix @@ -55,9 +55,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-videos/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-videos/default.nix index b656e36c05..8335bac3a9 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-videos/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/elementary-videos/default.nix @@ -59,9 +59,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/sideload/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/sideload/default.nix index e1fd51b516..fce4e5e765 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/sideload/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/sideload/default.nix @@ -53,9 +53,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/a11y/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/a11y/default.nix index 152026e17a..ae325e3bf8 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/a11y/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/a11y/default.nix @@ -56,9 +56,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/about/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/about/default.nix index 977d1a0b9f..786539d567 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/about/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/about/default.nix @@ -58,9 +58,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/applications/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/applications/default.nix index 03fb7e9349..776e027cbf 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/applications/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/applications/default.nix @@ -40,9 +40,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/bluetooth/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/bluetooth/default.nix index 53dc200a43..e6e33d0494 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/bluetooth/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/bluetooth/default.nix @@ -52,9 +52,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/datetime/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/datetime/default.nix index 71bbda8edb..abb6cfdfe6 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/datetime/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/datetime/default.nix @@ -56,9 +56,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/display/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/display/default.nix index 0b538b7697..0b426273b2 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/display/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/display/default.nix @@ -40,9 +40,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/keyboard/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/keyboard/default.nix index 18ccac20bb..8b7ec684db 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/keyboard/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/keyboard/default.nix @@ -62,9 +62,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/mouse-touchpad/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/mouse-touchpad/default.nix index 2c9b3833a0..b71f6ee36a 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/mouse-touchpad/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/mouse-touchpad/default.nix @@ -56,9 +56,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/network/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/network/default.nix index a136ca5e4e..74f5592e8e 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/network/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/network/default.nix @@ -51,9 +51,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/notifications/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/notifications/default.nix index f142b8e9bb..261b4cab16 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/notifications/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/notifications/default.nix @@ -50,9 +50,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/onlineaccounts/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/onlineaccounts/default.nix index eea2891622..52c92888f9 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/onlineaccounts/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/onlineaccounts/default.nix @@ -52,9 +52,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/pantheon-shell/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/pantheon-shell/default.nix index f79a8d82cf..8ee49d0240 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/pantheon-shell/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/pantheon-shell/default.nix @@ -60,9 +60,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/power/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/power/default.nix index d0079e6a05..00b5b0db1a 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/power/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/power/default.nix @@ -48,9 +48,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/printers/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/printers/default.nix index 85fa5538a4..039d8e86b9 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/printers/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/printers/default.nix @@ -40,9 +40,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/security-privacy/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/security-privacy/default.nix index c11a8ff6e2..942522fe0d 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/security-privacy/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/security-privacy/default.nix @@ -57,9 +57,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/sharing/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/sharing/default.nix index 32f572f55d..ebac909957 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/sharing/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/sharing/default.nix @@ -38,9 +38,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/sound/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/sound/default.nix index b421648e05..f7e2419422 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/sound/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/sound/default.nix @@ -42,9 +42,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/wacom/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/wacom/default.nix index 94300fcbdd..92befc5913 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/wacom/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard-plugs/wacom/default.nix @@ -47,9 +47,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard/default.nix index 7d030050f9..f13d90bd08 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/apps/switchboard/default.nix @@ -51,9 +51,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-gtk-theme/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-gtk-theme/default.nix index a51b409d92..483bbb0c49 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-gtk-theme/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-gtk-theme/default.nix @@ -34,9 +34,7 @@ stdenvNoCC.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-icon-theme/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-icon-theme/default.nix index 97fa6fc1ea..7a9a0dd8fb 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-icon-theme/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-icon-theme/default.nix @@ -50,9 +50,7 @@ stdenvNoCC.mkDerivation rec { postFixup = "gtk-update-icon-cache $out/share/icons/elementary"; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-redacted-script/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-redacted-script/default.nix index d6dc4e66cb..66c02d73f7 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-redacted-script/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-redacted-script/default.nix @@ -23,9 +23,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-sound-theme/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-sound-theme/default.nix index 2f326235c4..69d391f679 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-sound-theme/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-sound-theme/default.nix @@ -25,9 +25,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-wallpapers/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-wallpapers/default.nix index debf7f0201..b3568fb0bc 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-wallpapers/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/artwork/elementary-wallpapers/default.nix @@ -32,9 +32,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-default-settings/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-default-settings/default.nix index a42ae92e97..85e0f1a28f 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-default-settings/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-default-settings/default.nix @@ -63,9 +63,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-greeter/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-greeter/default.nix index 72d06e8a11..7598ab5ed8 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-greeter/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-greeter/default.nix @@ -109,9 +109,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; xgreeters = linkFarm "pantheon-greeter-xgreeters" [{ path = "${elementary-greeter}/share/xgreeters/io.elementary.greeter.desktop"; diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-onboarding/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-onboarding/default.nix index 246feae732..2784724599 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-onboarding/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-onboarding/default.nix @@ -53,9 +53,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-print-shim/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-print-shim/default.nix index cc25419f2e..816374c24c 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-print-shim/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-print-shim/default.nix @@ -30,9 +30,7 @@ stdenv.mkDerivation rec { buildInputs = [ gtk3 ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-session-settings/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-session-settings/default.nix index bf466c4d59..620c64f11d 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-session-settings/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-session-settings/default.nix @@ -28,7 +28,7 @@ let # Upstream relies on /etc/skel to initiate a new users home directory with plank's dockitems. # # That is not possible within nixos, but we can achieve this easily with a simple script that copies - # them. We then use a xdg autostart and initalize it during the "EarlyInitialization" phase of a gnome session + # them. We then use a xdg autostart and initialize it during the "EarlyInitialization" phase of a gnome session # which is most appropriate for installing files into $HOME. # @@ -139,9 +139,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; providedSessions = [ "pantheon" diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-shortcut-overlay/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-shortcut-overlay/default.nix index 3cf7cd365f..94d461a590 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-shortcut-overlay/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/elementary-shortcut-overlay/default.nix @@ -56,9 +56,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/gala/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/gala/default.nix index 6c77130988..56428a9124 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/gala/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/gala/default.nix @@ -60,6 +60,49 @@ stdenv.mkDerivation rec { url = "https://github.com/elementary/gala/commit/23c7edeb0ee9b0ff0aa48c1d19fbd1739df7af78.patch"; sha256 = "sha256-OfIDBfVEZoY8vMu9F8gtfRg4TYA1MUAG94BSOBKVGcI="; }) + + # Work around crash when receiving notifications + # https://github.com/elementary/gala/pull/1497 + (fetchpatch { + url = "https://github.com/elementary/gala/commit/8842e576e3e8643a018d506605f80d152e3f5cec.patch"; + sha256 = "sha256-xu9Rh7TH0ccRU1TInTNTm+dDaCXj5aaEwDw3rBW02q8="; + }) + + # ShadowEffect: let Clutter know the shadow's size + # https://github.com/elementary/gala/pull/1500 + (fetchpatch { + url = "https://github.com/elementary/gala/commit/34a208e26d2ee0bf4a1689c8ad6ddfc06c540ff8.patch"; + sha256 = "sha256-KPIXNWTlKGc3JImt82t5lmcMu0bqrPx1JNv+TbsxhOg="; + }) + + # Fix awkward two-finger scroll in multitasking view + # https://github.com/elementary/gala/pull/1499 + (fetchpatch { + url = "https://github.com/elementary/gala/commit/c175d2662dd05e940a5b3311cc9dc285242b7fc5.patch"; + sha256 = "sha256-xsxYDagPmaNSZO/Cj7NjPqBHCc1hrqvpboAvPIg9P58="; + }) + + # Fix crash when monitor is turned off + # https://github.com/elementary/gala/pull/1491 + (fetchpatch { + url = "https://github.com/elementary/gala/commit/1487660812a343e6a6178881e6e7b25c2405cece.patch"; + sha256 = "sha256-YsRaWmDSg0h0RFTUOoMxlNcKoA4MNa8AhW1GGmk8qLA="; + }) + + # Fix quick zooming (next 3 patches) + # https://github.com/elementary/gala/pull/1501 + (fetchpatch { + url = "https://github.com/elementary/gala/commit/b9c5c9c79a045c3eef7695f74f82d851438ba7e2.patch"; + sha256 = "sha256-PGjf/B/7UQxpW0Pby7ZXuMoDlamZwEaDvaN9PaRulHU="; + }) + (fetchpatch { + url = "https://github.com/elementary/gala/commit/49d3ddae5b631027466ff528c2935e05a8f5dc3f.patch"; + sha256 = "sha256-hvm2GcqiMYYxOLpQFXdyz325jZme7W+VYipu5goKoiU="; + }) + (fetchpatch { + url = "https://github.com/elementary/gala/commit/45126e4c2d3736e872c05941a2047a54788cd011.patch"; + sha256 = "sha256-LdhFFFNwvF1p1LqJXer8+DOgAptiHZHlfnQBwVEIZjo="; + }) ]; nativeBuildInputs = [ @@ -99,9 +142,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/a11y/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/a11y/default.nix index af83ad9155..163351075c 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/a11y/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/a11y/default.nix @@ -45,9 +45,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/applications-menu/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/applications-menu/default.nix index ec3edff71c..f342642e32 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/applications-menu/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/applications-menu/default.nix @@ -83,9 +83,7 @@ stdenv.mkDerivation rec { doCheck = true; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/bluetooth/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/bluetooth/default.nix index 605b4b7709..f0c2fb0def 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/bluetooth/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/bluetooth/default.nix @@ -52,9 +52,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/datetime/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/datetime/default.nix index 45558813ab..1fdd91a799 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/datetime/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/datetime/default.nix @@ -65,9 +65,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/keyboard/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/keyboard/default.nix index 6a9639b39c..9cdc3e0000 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/keyboard/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/keyboard/default.nix @@ -53,9 +53,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/network/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/network/default.nix index bacb5971ac..58844ccad7 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/network/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/network/default.nix @@ -43,9 +43,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/nightlight/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/nightlight/default.nix index a363dec44e..a900e7180e 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/nightlight/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/nightlight/default.nix @@ -40,9 +40,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/notifications/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/notifications/default.nix index d16472d584..6db8166197 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/notifications/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/notifications/default.nix @@ -42,9 +42,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/power/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/power/default.nix index 84585f7d77..2e5329701a 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/power/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/power/default.nix @@ -62,9 +62,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/session/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/session/default.nix index db3b9807a0..eae385178d 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/session/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/session/default.nix @@ -42,9 +42,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/sound/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/sound/default.nix index 758ecdf04b..b6fb4870b9 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/sound/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel-indicators/sound/default.nix @@ -55,9 +55,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel/default.nix index 70f22a3772..8342e26807 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/desktop/wingpanel/default.nix @@ -72,9 +72,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/granite/7/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/granite/7/default.nix index 4ba07a2546..0f46c70297 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/granite/7/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/granite/7/default.nix @@ -53,9 +53,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.granite7"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/services/contractor/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/services/contractor/default.nix index ba00be72e2..f4ce10df84 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/services/contractor/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/services/contractor/default.nix @@ -44,9 +44,7 @@ stdenv.mkDerivation rec { PKG_CONFIG_DBUS_1_SESSION_BUS_SERVICES_DIR = "${placeholder "out"}/share/dbus-1/services"; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/services/elementary-capnet-assist/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/services/elementary-capnet-assist/default.nix index b72353a395..fe2649f82a 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/services/elementary-capnet-assist/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/services/elementary-capnet-assist/default.nix @@ -53,9 +53,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/services/elementary-notifications/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/services/elementary-notifications/default.nix index 27b76ce340..abff47fbd8 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/services/elementary-notifications/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/services/elementary-notifications/default.nix @@ -52,9 +52,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/services/elementary-settings-daemon/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/services/elementary-settings-daemon/default.nix index 04dc119c52..6f4cf8cf8d 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/services/elementary-settings-daemon/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/services/elementary-settings-daemon/default.nix @@ -59,9 +59,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/services/pantheon-agent-geoclue2/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/services/pantheon-agent-geoclue2/default.nix index 2d4309c017..942e53aaf8 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/services/pantheon-agent-geoclue2/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/services/pantheon-agent-geoclue2/default.nix @@ -48,9 +48,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/services/pantheon-agent-polkit/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/services/pantheon-agent-polkit/default.nix index 7ffa02fad7..9e1c3464da 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/services/pantheon-agent-polkit/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/services/pantheon-agent-polkit/default.nix @@ -40,9 +40,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/services/xdg-desktop-portal-pantheon/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/services/xdg-desktop-portal-pantheon/default.nix index 9673be03f6..a7e0fae873 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/services/xdg-desktop-portal-pantheon/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/services/xdg-desktop-portal-pantheon/default.nix @@ -50,9 +50,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = "pantheon.${pname}"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/pantheon/third-party/pantheon-tweaks/default.nix b/third_party/nixpkgs/pkgs/desktops/pantheon/third-party/pantheon-tweaks/default.nix index 3122af276a..d0ee4a0d1c 100644 --- a/third_party/nixpkgs/pkgs/desktops/pantheon/third-party/pantheon-tweaks/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/pantheon/third-party/pantheon-tweaks/default.nix @@ -51,9 +51,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/plasma-5/plasma-mobile/default.nix b/third_party/nixpkgs/pkgs/desktops/plasma-5/plasma-mobile/default.nix index ce0da404bb..22ea8bf782 100644 --- a/third_party/nixpkgs/pkgs/desktops/plasma-5/plasma-mobile/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/plasma-5/plasma-mobile/default.nix @@ -16,6 +16,7 @@ , kconfig , krunner , kinit +, kirigami-addons , kwayland , kwin , plasma-framework @@ -50,6 +51,7 @@ mkDerivation { kconfig krunner kinit + kirigami-addons kwayland kwin plasma-framework diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-notifyd/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-notifyd/default.nix index 8a376862d9..2d3d9c5d4e 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-notifyd/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-notifyd/default.nix @@ -12,9 +12,9 @@ mkXfceDerivation { category = "apps"; pname = "xfce4-notifyd"; - version = "0.6.4"; + version = "0.6.5"; - sha256 = "sha256-H/qAfgwM0qaIxpVlSAUJJ4/Z3WtvYxJb2TtjKHK6AjE="; + sha256 = "sha256-NUEqQk9EcDl23twbo+DUt7QYZrPmWpsRzmi5wIdolqw="; buildInputs = [ gtk3 diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-taskmanager/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-taskmanager/default.nix index ace9f16e42..9bbc524eab 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-taskmanager/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-taskmanager/default.nix @@ -1,14 +1,14 @@ -{ lib, mkXfceDerivation, exo, gtk3, libwnck, libXmu }: +{ lib, mkXfceDerivation, exo, gtk3, libxfce4ui, xfconf, libwnck, libXmu }: mkXfceDerivation { category = "apps"; pname = "xfce4-taskmanager"; - version = "1.4.2"; + version = "1.5.5"; - sha256 = "sha256-jcICXPtG/7t0U0xqgvU52mjiA8wsyw7JQ0OmNjwA89A="; + sha256 = "sha256-worHYB9qibRxMaCYQ0+nHA9CSTColewgahyrXiPOnQA="; nativeBuildInputs = [ exo ]; - buildInputs = [ gtk3 libwnck libXmu ]; + buildInputs = [ gtk3 libxfce4ui xfconf libwnck libXmu ]; meta = with lib; { description = "Easy to use task manager for Xfce"; diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix index 1a63a62510..99c8741851 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix @@ -11,6 +11,8 @@ mkXfceDerivation { buildInputs = [ gtk3 libxfce4ui vte xfconf pcre2 ]; + NIX_CFLAGS_COMPILE = "-I${libxfce4ui.dev}/include/xfce4"; + passthru.tests.test = nixosTests.terminal-emulators.xfce4-terminal; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-volumed-pulse/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-volumed-pulse/default.nix index 1311810318..3820cae101 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-volumed-pulse/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/applications/xfce4-volumed-pulse/default.nix @@ -7,6 +7,12 @@ mkXfceDerivation { sha256 = "sha256-EgmTk19p9OBmz3rWQB0LoPhhoDm4u1V6/vvgitOzUuc="; + # https://gitlab.xfce.org/apps/xfce4-volumed-pulse/-/merge_requests/3 + postPatch = '' + substituteInPlace configure.ac.in \ + --replace "2.16" "2.26" + ''; + buildInputs = [ gtk3 libnotify libpulseaudio keybinder3 xfconf ]; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/exo/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/exo/default.nix index 27a5041eac..bb8a846c50 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/exo/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/exo/default.nix @@ -4,9 +4,9 @@ mkXfceDerivation { category = "xfce"; pname = "exo"; - version = "4.16.4"; + version = "4.18.0"; - sha256 = "sha256-/BKgQYmDaiptzlTTFqDm2aHykTCHm4MIvWnjxKYi6Es="; + sha256 = "sha256-oWlKeUD1v2qqb8vY+2Cu9VJ1iThFPVboP12m/ob5KSQ="; nativeBuildInputs = [ libxslt diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/garcon/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/garcon/default.nix index 740022550e..656ff4ba5e 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/garcon/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/garcon/default.nix @@ -3,9 +3,9 @@ mkXfceDerivation { category = "xfce"; pname = "garcon"; - version = "4.16.1"; + version = "4.18.0"; - sha256 = "sha256-KimO6w82lkUBSzJbBMI3W8w1eXPARE1oVyJEUk6olow="; + sha256 = "sha256-l1wGitD8MM1GrR4FyyPIxHSqK+AqKKyjTIN7VOaVzpM="; nativeBuildInputs = [ gobject-introspection ]; diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/libxfce4ui/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/libxfce4ui/default.nix index fc3535127f..e664ae7788 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/libxfce4ui/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/libxfce4ui/default.nix @@ -4,9 +4,9 @@ mkXfceDerivation { category = "xfce"; pname = "libxfce4ui"; - version = "4.16.1"; + version = "4.18.0"; - sha256 = "sha256-5mwyC3YA1LvdVSvaHN7CXDJh+IXjmdHGLKzhpjtUZkw="; + sha256 = "sha256-AYjnIi9l3l4g+wqGrPhS2AEsYNJwK1KMofCeyEz+VHs="; nativeBuildInputs = [ gobject-introspection vala ]; buildInputs = [ gtk3 libstartup_notification libgtop libepoxy xfconf ]; diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/libxfce4util/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/libxfce4util/default.nix index 4262a03930..a2bdee37eb 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/libxfce4util/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/libxfce4util/default.nix @@ -3,9 +3,9 @@ mkXfceDerivation { category = "xfce"; pname = "libxfce4util"; - version = "4.16.0"; + version = "4.18.0"; - sha256 = "sha256-q2vH4k1OiergjITOaA9+m92C3Q/sbPoKVrAFxG60Gtw="; + sha256 = "sha256-m4O/vTFqzkF6rzyGVw8xdwcX7S/SyOSJo8aCZjniXAw="; nativeBuildInputs = [ gobject-introspection vala ]; diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar-volman/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar-volman/default.nix index 3fe2df6f1b..33b34e5bee 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar-volman/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar-volman/default.nix @@ -3,11 +3,11 @@ mkXfceDerivation { category = "xfce"; pname = "thunar-volman"; - version = "4.16.0"; + version = "4.18.0"; buildInputs = [ exo gtk3 libgudev libxfce4ui libxfce4util xfconf ]; - sha256 = "sha256-A9APQ5FLshb+MXQErCExegax6hqbHnlfI2hgtnWfVgA="; + sha256 = "sha256-NRVoakU8jTCJVe+iyJQwW1xPti2vjd/8n8CYrIYGII0="; odd-unstable = false; diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar/default.nix index dd8e8f9809..2a6878fbf7 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar/default.nix @@ -21,9 +21,9 @@ let unwrapped = mkXfceDerivation { category = "xfce"; pname = "thunar"; - version = "4.16.11"; + version = "4.18.0"; - sha256 = "sha256-xan0HuHYLVArx3dGzzxsCjQ8eWsXNk0LtZGAejA2iGI="; + sha256 = "sha256-vsc5vEdyYEtpKktBiIRayZl7MjHrxKzL7iwzvBCAqG0="; nativeBuildInputs = [ docbook_xsl @@ -44,9 +44,9 @@ let unwrapped = mkXfceDerivation { xfconf ]; - patches = [ - ./thunarx_plugins_directory.patch - ]; + configureFlags = [ "--with-custom-thunarx-dirs-enabled" ]; + + NIX_CFLAGS_COMPILE = "-I${libxfce4ui.dev}/include/xfce4"; # the desktop file … is in an insecure location» # which pops up when invoking desktop files that are diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar/thunarx_plugins_directory.patch b/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar/thunarx_plugins_directory.patch deleted file mode 100644 index 594a81c829..0000000000 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar/thunarx_plugins_directory.patch +++ /dev/null @@ -1,48 +0,0 @@ -diff --git a/thunarx/thunarx-provider-factory.c b/thunarx/thunarx-provider-factory.c -index 94b11545..1f66c982 100644 ---- a/thunarx/thunarx-provider-factory.c -+++ b/thunarx/thunarx-provider-factory.c -@@ -150,12 +150,19 @@ static GList* - thunarx_provider_factory_load_modules (ThunarxProviderFactory *factory) - { - ThunarxProviderModule *module; -+ const gchar *thunar_dir; - const gchar *name; - GList *modules = NULL; - GList *lp; - GDir *dp; - -- dp = g_dir_open (THUNARX_DIRECTORY, 0, NULL); -+ thunar_dir = g_getenv("THUNARX_MODULE_DIR"); -+ if (NULL == thunar_dir) -+ { -+ thunar_dir = THUNARX_DIRECTORY; -+ } -+ -+ dp = g_dir_open (thunar_dir, 0, NULL); - if (G_LIKELY (dp != NULL)) - { - /* determine the types for all existing plugins */ -diff --git a/thunarx/thunarx-provider-module.c b/thunarx/thunarx-provider-module.c -index 023ad2ae..b1d1be8f 100644 ---- a/thunarx/thunarx-provider-module.c -+++ b/thunarx/thunarx-provider-module.c -@@ -174,10 +174,17 @@ static gboolean - thunarx_provider_module_load (GTypeModule *type_module) - { - ThunarxProviderModule *module = THUNARX_PROVIDER_MODULE (type_module); -+ const gchar *thunar_dir; - gchar *path; - -+ thunar_dir = g_getenv("THUNARX_MODULE_DIR"); -+ if (NULL == thunar_dir) -+ { -+ thunar_dir = THUNARX_DIRECTORY; -+ } -+ - /* load the module using the runtime link editor */ -- path = g_build_filename (THUNARX_DIRECTORY, type_module->name, NULL); -+ path = g_build_filename (thunar_dir, type_module->name, NULL); - module->library = g_module_open (path, G_MODULE_BIND_LAZY | G_MODULE_BIND_LOCAL); - g_free (path); - diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar/wrapper.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar/wrapper.nix index 584c356547..43531f2012 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar/wrapper.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/thunar/wrapper.nix @@ -9,10 +9,10 @@ symlinkJoin { postBuild = '' wrapProgram "$out/bin/thunar" \ - --set "THUNARX_MODULE_DIR" "$out/lib/thunarx-3" + --set "THUNARX_DIRS" "$out/lib/thunarx-3" wrapProgram "$out/bin/thunar-settings" \ - --set "THUNARX_MODULE_DIR" "$out/lib/thunarx-3" + --set "THUNARX_DIRS" "$out/lib/thunarx-3" # NOTE: we need to remove the folder symlink itself and create # a new folder before trying to substitute any file below. diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/tumbler/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/tumbler/default.nix index ee5413fdda..9d47d1ec7a 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/tumbler/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/tumbler/default.nix @@ -7,6 +7,7 @@ , libgsf , poppler , gst_all_1 +, libxfce4util }: # TODO: add libopenraw @@ -14,11 +15,12 @@ mkXfceDerivation { category = "xfce"; pname = "tumbler"; - version = "4.16.1"; + version = "4.18.0"; - sha256 = "sha256-f2pCItNHTB0ggovIddpwNWEhaohfxD2otN8x9VfwR4k="; + sha256 = "sha256-qxbS0PMhwVk2I3fbblJEeIuI72xSWVsQx5SslhOvg+c="; buildInputs = [ + libxfce4util ffmpegthumbnailer freetype gdk-pixbuf diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-appfinder/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-appfinder/default.nix index d98353a070..b479a574d9 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-appfinder/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-appfinder/default.nix @@ -3,9 +3,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfce4-appfinder"; - version = "4.16.1"; + version = "4.18.0"; - sha256 = "sha256-Xr8iiCDQYmxiLR2+TeuJggV1dLM/U4b7u7kpvFWT+uQ="; + sha256 = "sha256-/VYZpWk08OQPZ/DQ5SqSL4F4KDdh+IieQBDOZUxZvtw="; nativeBuildInputs = [ exo ]; buildInputs = [ garcon gtk3 libxfce4ui libxfce4util xfconf ]; diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-dev-tools/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-dev-tools/default.nix index 16c35e6002..25b3e6f805 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-dev-tools/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-dev-tools/default.nix @@ -14,9 +14,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfce4-dev-tools"; - version = "4.16.0"; + version = "4.18.0"; - sha256 = "sha256-5r9dJfCgXosXoOAtNg1kaPWgFEAmyw/pWTtdG+K1h3A="; + sha256 = "sha256-VgQiTRMPD1VeUkUnFkX78C2VrsrXFWCdmupL8PQc7+c="; nativeBuildInputs = [ autoreconfHook diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-panel/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-panel/default.nix index fed25720e3..d76523a94c 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-panel/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-panel/default.nix @@ -17,9 +17,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfce4-panel"; - version = "4.16.5"; + version = "4.18.0"; - sha256 = "sha256-RK4sEir8CvB1aa2dZWJftA+2n4YPUEkhF9afOfOTA0Y="; + sha256 = "sha256-CnZk0Ca3IG6nmiwe7eIvPqpzJgRZHIyqeoTA5cPpU7s="; nativeBuildInputs = [ gobject-introspection diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-power-manager/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-power-manager/default.nix index 107357d5a7..d14752fbab 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-power-manager/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-power-manager/default.nix @@ -4,9 +4,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfce4-power-manager"; - version = "4.16.0"; + version = "4.18.0"; - sha256 = "sha256-Qk++1db+agiU99p+QW8/WNnNqFVejV/BcnmgvfoB3OU="; + sha256 = "sha256-vl0SfZyVGxZYnSa2nCnYlqT05Hm7PLzOxgAGzapkKVI="; nativeBuildInputs = [ automakeAddFlags exo ]; buildInputs = [ gtk3 libnotify libxfce4ui libxfce4util upower xfconf xfce4-panel ]; diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-session/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-session/default.nix index 5ce96c1b02..f8dc8b92da 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-session/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-session/default.nix @@ -3,9 +3,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfce4-session"; - version = "4.16.0"; + version = "4.18.0"; - sha256 = "sha256-LIRAQ1YAkAHwIzC5NYV/0iFLkAP5V96wuTIrYTGbGy0="; + sha256 = "sha256-eSQXVMdwxr/yE806Tly8CLimmJso6k4muuTR7RHPU3U="; buildInputs = [ exo gtk3 glib libxfce4ui libxfce4util libwnck xfconf polkit iceauth ]; diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-settings/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-settings/default.nix index bf003fca5a..6e0990e909 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-settings/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfce4-settings/default.nix @@ -5,9 +5,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfce4-settings"; - version = "4.16.5"; + version = "4.18.0"; - sha256 = "sha256-ZVQw/oqN+jCOWj8O+1ldVCvbzY+QcebaQI5oFOdMOew="; + sha256 = "sha256-T0sPcsyGqa0hEXIb/mhxb29OnuLmHey6Tt/iB4nQvoM="; postPatch = '' for f in xfsettingsd/pointers.c dialogs/mouse-settings/main.c; do diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfconf/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfconf/default.nix index c394625829..18bc54436b 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfconf/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfconf/default.nix @@ -3,9 +3,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfconf"; - version = "4.16.0"; + version = "4.18.0"; - sha256 = "sha256-w8wnHFj1KBX6lCnGbVLgWPEo2ul4SwfemUYVHioTlwE="; + sha256 = "sha256-8zl2EWV1DRHsH0QUNa13OKvfIVDVOhIO0FCMbU978Js="; nativeBuildInputs = [ gobject-introspection vala ]; diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfdesktop/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfdesktop/default.nix index bc3c714eb0..7d67741657 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfdesktop/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfdesktop/default.nix @@ -3,9 +3,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfdesktop"; - version = "4.16.1"; + version = "4.18.0"; - sha256 = "sha256-JecuD0DJASHaxL6gwmL3hcmAEA7sVIyaM0ushrdq4/Y="; + sha256 = "sha256-HZVu5UVLKDCWaUpw1SV8E0JLGRG946w4QLlA51rg/Bo="; buildInputs = [ exo diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfwm4/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfwm4/default.nix index efc12dd91e..abd08f5a6f 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/core/xfwm4/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/core/xfwm4/default.nix @@ -5,9 +5,9 @@ mkXfceDerivation { category = "xfce"; pname = "xfwm4"; - version = "4.16.1"; + version = "4.18.0"; - sha256 = "sha256-CwRJk+fqu3iC4Vb6fKGOIZZk2hxTqYF3sNvm6WKqHdI="; + sha256 = "sha256-nTPgxC0XMBJ48lPCeQgCvWWK1/2ZIoQOYsMeaxDpE1c="; nativeBuildInputs = [ exo librsvg ]; diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/default.nix index 546681afed..76923f4d57 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/default.nix @@ -192,55 +192,4 @@ lib.makeScopeWithSplicing thunar-bare = self.thunar.override { thunarPlugins = [ ]; }; # added 2019-11-04 - }) // lib.optionalAttrs config.allowAliases { - #### Legacy aliases. They need to be outside the scope or they will shadow the attributes from parent scope. - - terminal = throw "xfce.terminal has been removed, use xfce.xfce4-terminal instead"; # added 2022-05-24 - thunar-build = throw "xfce.thunar-build has been removed, use xfce.thunar-bare instead"; # added 2022-05-24 - thunarx-2-dev = throw "xfce.thunarx-2-dev has been removed, use xfce.thunar-bare instead"; # added 2022-05-24 - thunar_volman = throw "xfce.thunar_volman has been removed, use xfce.thunar-volman instead"; # added 2022-05-24 - xfce4panel = throw "xfce.xfce4panel has been removed, use xfce.xfce4-panel instead"; # added 2022-05-24 - xfce4session = throw "xfce.xfce4session has been removed, use xfce.xfce4-session instead"; # added 2022-05-24 - xfce4settings = throw "xfce.xfce4settings has been removed, use xfce.xfce4-settings instead"; # added 2022-05-24 - xfce4_power_manager = throw "xfce.xfce4_power_manager has been removed, use xfce.xfce4-power-manager instead"; # added 2022-05-24 - xfce4_appfinder = throw "xfce.xfce4_appfinder has been removed, use xfce.xfce4-appfinder instead"; # added 2022-05-24 - xfce4_dev_tools = throw "xfce.xfce4_dev_tools has been removed, use xfce.xfce4-dev-tools instead"; # added 2022-05-24 - xfce4notifyd = throw "xfce.xfce4notifyd has been removed, use xfce.xfce4-notifyd instead"; # added 2022-05-24 - xfce4taskmanager = throw "xfce.xfce4taskmanager has been removed, use xfce.xfce4-taskmanager instead"; # added 2022-05-24 - xfce4terminal = throw "xfce.xfce4terminal has been removed, use xfce.xfce4-terminal instead"; # added 2022-05-24 - xfce4volumed_pulse = throw "xfce.xfce4volumed_pulse has been removed, use xfce.xfce4-volumed-pulse instead"; # added 2022-05-24 - xfce4icontheme = throw "xfce.xfce4icontheme has been removed, use xfce.xfce4-icon-theme instead"; # added 2022-05-24 - xfwm4themes = throw "xfce.xfwm4themes has been removed, use xfce.xfwm4-themes instead"; # added 2022-05-24 - xfce4_battery_plugin = throw "xfce.xfce4_battery_plugin has been removed, use xfce.xfce4-battery-plugin instead"; # added 2022-05-24 - xfce4_clipman_plugin = throw "xfce.xfce4_clipman_plugin has been removed, use xfce.xfce4-clipman-plugin instead"; # added 2022-05-24 - xfce4_cpufreq_plugin = throw "xfce.xfce4_cpufreq_plugin has been removed, use xfce.xfce4-cpufreq-plugin instead"; # added 2022-05-24 - xfce4_cpugraph_plugin = throw "xfce.xfce4_cpugraph_plugin has been removed, use xfce.xfce4-cpugraph-plugin instead"; # added 2022-05-24 - xfce4_datetime_plugin = throw "xfce.xfce4_datetime_plugin has been removed, use xfce.xfce4-datetime-plugin instead"; # added 2022-05-24 - xfce4_dockbarx_plugin = throw "xfce.xfce4_dockbarx_plugin has been removed, use xfce.xfce4-dockbarx-plugin instead"; # added 2022-05-24 - xfce4_embed_plugin = throw "xfce.xfce4_embed_plugin has been removed, use xfce.xfce4-embed-plugin instead"; # added 2022-05-24 - xfce4_eyes_plugin = throw "xfce.xfce4_eyes_plugin has been removed, use xfce.xfce4-eyes-plugin instead"; # added 2022-05-24 - xfce4_fsguard_plugin = throw "xfce.xfce4_fsguard_plugin has been removed, use xfce.xfce4-fsguard-plugin instead"; # added 2022-05-24 - xfce4_genmon_plugin = throw "xfce.xfce4_genmon_plugin has been removed, use xfce.xfce4-genmon-plugin instead"; # added 2022-05-24 - xfce4_hardware_monitor_plugin = throw "xfce.xfce4_hardware_monitor_plugin has been removed, use xfce.xfce4-hardware-monitor-plugin instead"; # added 2022-05-24 - xfce4_namebar_plugin = throw "xfce.xfce4_namebar_plugin has been removed, use xfce.xfce4-namebar-plugin instead"; # added 2022-05-24 - xfce4_netload_plugin = throw "xfce.xfce4_netload_plugin has been removed, use xfce.xfce4-netload-plugin instead"; # added 2022-05-24 - xfce4_notes_plugin = throw "xfce.xfce4_notes_plugin has been removed, use xfce.xfce4-notes-plugin instead"; # added 2022-05-24 - xfce4_mailwatch_plugin = throw "xfce.xfce4_mailwatch_plugin has been removed, use xfce.xfce4-mailwatch-plugin instead"; # added 2022-05-24 - xfce4_mpc_plugin = throw "xfce.xfce4_mpc_plugin has been removed, use xfce.xfce4-mpc-plugin instead"; # added 2022-05-24 - xfce4_sensors_plugin = throw "xfce.xfce4_sensors_plugin has been removed, use xfce.xfce4-sensors-plugin instead"; # added 2022-05-24 - xfce4_systemload_plugin = throw "xfce.xfce4_systemload_plugin has been removed, use xfce.xfce4-systemload-plugin instead"; # added 2022-05-24 - xfce4_timer_plugin = throw "xfce.xfce4_timer_plugin has been removed, use xfce.xfce4-timer-plugin instead"; # added 2022-05-24 - xfce4_verve_plugin = throw "xfce.xfce4_verve_plugin has been removed, use xfce.xfce4-verve-plugin instead"; # added 2022-05-24 - xfce4_xkb_plugin = throw "xfce.xfce4_xkb_plugin has been removed, use xfce.xfce4-xkb-plugin instead"; # added 2022-05-24 - xfce4_weather_plugin = throw "xfce.xfce4_weather_plugin has been removed, use xfce.xfce4-weather-plugin instead"; # added 2022-05-24 - xfce4_whiskermenu_plugin = throw "xfce.xfce4_whiskermenu_plugin has been removed, use xfce.xfce4-whiskermenu-plugin instead"; # added 2022-05-24 - xfce4_windowck_plugin = throw "xfce.xfce4_windowck_plugin has been removed, use xfce.xfce4-windowck-plugin instead"; # added 2022-05-24 - xfce4_pulseaudio_plugin = throw "xfce.xfce4_pulseaudio_plugin has been removed, use xfce.xfce4-pulseaudio-plugin instead"; # added 2022-05-24 - libxfce4ui_gtk3 = throw "xfce.libxfce4ui_gtk3 has been removed, use xfce.libxfce4ui instead"; # added 2022-05-24 - xfce4panel_gtk3 = throw "xfce.xfce4panel_gtk3 has been removed, use xfce.xfce4-panel instead"; # added 2022-05-24 - xfce4_power_manager_gtk3 = throw "xfce.xfce4_power_manager_gtk3 has been removed, use xfce.xfce4-power-manager instead"; # added 2022-05-24 - gtk = throw "xfce.gtk has been removed, use gtk2 instead"; # added 2022-05-24 - gtksourceview = throw "xfce.gtksourceview has been removed, use gtksourceview instead"; # added 2022-05-24 - dconf = throw "xfce.dconf has been removed, use dconf instead"; # added 2022-05-24 - vte = throw "xfce.vte has been removed, use vte instead"; # added 2022-05-24 -} + }) diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/panel-plugins/xfce4-cpufreq-plugin/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/panel-plugins/xfce4-cpufreq-plugin/default.nix index fb070ed365..bba028bfe5 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/panel-plugins/xfce4-cpufreq-plugin/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/panel-plugins/xfce4-cpufreq-plugin/default.nix @@ -3,8 +3,8 @@ mkXfceDerivation { category = "panel-plugins"; pname = "xfce4-cpufreq-plugin"; - version = "1.2.7"; - sha256 = "sha256-M+BehEYcHZlnuYwBlI7F0aPxPGwExTL5I9Jf6W5ugOY="; + version = "1.2.8"; + sha256 = "sha256-wEVv3zBS9PRLOMusFPzTnffVDvTaBnTCyGjstJRQRCo="; buildInputs = [ gtk3 libxfce4ui libxfce4util xfce4-panel xfconf ]; diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/panel-plugins/xfce4-cpugraph-plugin/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/panel-plugins/xfce4-cpugraph-plugin/default.nix index 8a2cd77094..ad0110a564 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/panel-plugins/xfce4-cpugraph-plugin/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/panel-plugins/xfce4-cpugraph-plugin/default.nix @@ -13,10 +13,10 @@ mkXfceDerivation rec { category = "panel-plugins"; pname = "xfce4-cpugraph-plugin"; - version = "1.2.6"; + version = "1.2.7"; rev-prefix = "xfce4-cpugraph-plugin-"; odd-unstable = false; - sha256 = "sha256-Elm10ZGN93R+1XZ4vJJZZIJ6OcaHpsrH0nQRMMuFnLY="; + sha256 = "sha256-IgxljHJAg9Bp/OFFZiQ6QwE5vtAtQ0WmYHs78NVsmCw="; buildInputs = [ exo diff --git a/third_party/nixpkgs/pkgs/desktops/xfce/panel-plugins/xfce4-sensors-plugin/default.nix b/third_party/nixpkgs/pkgs/desktops/xfce/panel-plugins/xfce4-sensors-plugin/default.nix index 2e82deb2d3..fbc40f1902 100644 --- a/third_party/nixpkgs/pkgs/desktops/xfce/panel-plugins/xfce4-sensors-plugin/default.nix +++ b/third_party/nixpkgs/pkgs/desktops/xfce/panel-plugins/xfce4-sensors-plugin/default.nix @@ -8,11 +8,11 @@ in stdenv.mkDerivation rec { pname = "xfce4-sensors-plugin"; - version = "1.4.3"; + version = "1.4.4"; src = fetchurl { url = "mirror://xfce/src/${category}/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.bz2"; - sha256 = "sha256-FxwCNfcMZfD/7lh+lg2dp5soSFXfIhMCOerCYnLsBsk="; + sha256 = "sha256-bBYFpzjl30DghNCKyT+WLNRFCTOW3h6b+tx6tFiMNrY="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/beam-modules/default.nix b/third_party/nixpkgs/pkgs/development/beam-modules/default.nix index 068e1da331..86f7d94eed 100644 --- a/third_party/nixpkgs/pkgs/development/beam-modules/default.nix +++ b/third_party/nixpkgs/pkgs/development/beam-modules/default.nix @@ -1,6 +1,7 @@ -{ lib, pkgs, erlang }: +{ lib, __splicedPackages, erlang }: let + pkgs = __splicedPackages; inherit (lib) makeExtensible; lib' = pkgs.callPackage ./lib.nix { }; diff --git a/third_party/nixpkgs/pkgs/development/beam-modules/lib.nix b/third_party/nixpkgs/pkgs/development/beam-modules/lib.nix index 1b021cf934..2d93b28cda 100644 --- a/third_party/nixpkgs/pkgs/development/beam-modules/lib.nix +++ b/third_party/nixpkgs/pkgs/development/beam-modules/lib.nix @@ -1,5 +1,8 @@ -{ pkgs, lib }: +{ __splicedPackages, lib }: +let + pkgs = __splicedPackages; +in rec { /* Similar to callPackageWith/callPackage, but without makeOverridable diff --git a/third_party/nixpkgs/pkgs/development/compilers/carp/default.nix b/third_party/nixpkgs/pkgs/development/compilers/carp/default.nix index 209fc6aed6..1c7408f3a1 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/carp/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/carp/default.nix @@ -50,4 +50,7 @@ haskellPackages.mkDerivation rec { # Windows not (yet) supported. platforms = with lib.platforms; unix ++ darwin; + # doesn't build on ghc92 + hydraPlatforms = lib.platforms.none; + broken = true; } diff --git a/third_party/nixpkgs/pkgs/development/compilers/dotnet/build-dotnet.nix b/third_party/nixpkgs/pkgs/development/compilers/dotnet/build-dotnet.nix index e25a8a1464..c51eca24b5 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/dotnet/build-dotnet.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/dotnet/build-dotnet.nix @@ -24,6 +24,7 @@ assert if type == "sdk" then packages != null else true; , testers , runCommand , writeShellScript +, mkNugetDeps }: let @@ -40,6 +41,12 @@ let runtime = ".NET Runtime ${version}"; sdk = ".NET SDK ${version}"; }; + + packageDeps = mkNugetDeps { + name = "${pname}-${version}-deps"; + nugetDeps = packages; + }; + in stdenv.mkDerivation (finalAttrs: rec { inherit pname version; @@ -120,14 +127,8 @@ stdenv.mkDerivation (finalAttrs: rec { ''; passthru = rec { - inherit icu packages; - - runtimeIdentifierMap = { - "x86_64-linux" = "linux-x64"; - "aarch64-linux" = "linux-arm64"; - "x86_64-darwin" = "osx-x64"; - "aarch64-darwin" = "osx-arm64"; - }; + inherit icu; + packages = packageDeps; updateScript = if type == "sdk" then @@ -141,9 +142,6 @@ stdenv.mkDerivation (finalAttrs: rec { exec ${./update.sh} "${majorVersion}" '' else null; - # Convert a "stdenv.hostPlatform.system" to a dotnet RID - systemToDotnetRid = system: runtimeIdentifierMap.${system} or (throw "unsupported platform ${system}"); - tests = { version = testers.testVersion { package = finalAttrs.finalPackage; diff --git a/third_party/nixpkgs/pkgs/development/compilers/dotnet/default.nix b/third_party/nixpkgs/pkgs/development/compilers/dotnet/default.nix index 53c32121aa..c2cb6eb378 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/dotnet/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/dotnet/default.nix @@ -14,6 +14,18 @@ let buildNetSdk = attrs: buildDotnet (attrs // { type = "sdk"; }); }; + runtimeIdentifierMap = { + "x86_64-linux" = "linux-x64"; + "aarch64-linux" = "linux-arm64"; + "x86_64-darwin" = "osx-x64"; + "aarch64-darwin" = "osx-arm64"; + "x86_64-windows" = "win-x64"; + "i686-windows" = "win-x86"; + }; + + # Convert a "stdenv.hostPlatform.system" to a dotnet RID + systemToDotnetRid = system: runtimeIdentifierMap.${system} or (throw "unsupported platform ${system}"); + ## Files in versions/ are generated automatically by update.sh ## dotnet_3_1 = import ./versions/3.1.nix (buildAttrs // { icu = icu70; }); dotnet_5_0 = import ./versions/5.0.nix (buildAttrs // { inherit icu; }); @@ -21,6 +33,8 @@ let dotnet_7_0 = import ./versions/7.0.nix (buildAttrs // { inherit icu; }); in rec { + inherit systemToDotnetRid; + combinePackages = attrs: callPackage (import ./combine-packages.nix attrs) {}; # EOL diff --git a/third_party/nixpkgs/pkgs/development/compilers/dotnet/update.sh b/third_party/nixpkgs/pkgs/development/compilers/dotnet/update.sh index 8f59e58ff5..84bf37c3c8 100755 --- a/third_party/nixpkgs/pkgs/development/compilers/dotnet/update.sh +++ b/third_party/nixpkgs/pkgs/development/compilers/dotnet/update.sh @@ -91,7 +91,7 @@ aspnetcore_packages () { # would fail due to missing dependencies. # # Moving them to a separate list stored alongside the SDK package definitions, - # and implictly including them along in buildDotnetModule allows us + # and implicitly including them along in buildDotnetModule allows us # to make updating .NET SDK packages a lot easier - we now just update # the versions of these packages in one place, and all packages that # use buildDotnetModule continue building with the new .NET version without changes. @@ -141,7 +141,7 @@ sdk_packages () { # would fail due to missing dependencies. # # Moving them to a separate list stored alongside the SDK package definitions, - # and implictly including them along in buildDotnetModule allows us + # and implicitly including them along in buildDotnetModule allows us # to make updating .NET SDK packages a lot easier - we now just update # the versions of these packages in one place, and all packages that # use buildDotnetModule continue building with the new .NET version without changes. diff --git a/third_party/nixpkgs/pkgs/development/compilers/elm/default.nix b/third_party/nixpkgs/pkgs/development/compilers/elm/default.nix index f395651a0f..e5ccffc7e7 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/elm/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/elm/default.nix @@ -2,7 +2,7 @@ let - # To controll nodejs version we pass down + # To control nodejs version we pass down nodejs = pkgs.nodejs-14_x; fetchElmDeps = pkgs.callPackage ./fetchElmDeps.nix { }; @@ -37,6 +37,7 @@ let */ elm-format = justStaticExecutables (overrideCabal (drv: { jailbreak = true; + doCheck = assert (drv.version == "0.8.5"); false; # golden tests fail with optparse-applicative 0.17 description = "Formats Elm source code according to a standard set of rules based on the official Elm Style Guide"; homepage = "https://github.com/avh4/elm-format"; @@ -96,6 +97,7 @@ let hspec = self.hspec_2_7_10; hspec-core = self.hspec-core_2_7_10; hspec-discover = self.hspec-discover_2_7_10; + hspec-meta = self.hspec-meta_2_7_8; elm-format-test-lib = self.callPackage ./packages/elm-format-test-lib.nix {}; elm-format-markdown = self.callPackage ./packages/elm-format-markdown.nix {}; diff --git a/third_party/nixpkgs/pkgs/development/compilers/fstar/default.nix b/third_party/nixpkgs/pkgs/development/compilers/fstar/default.nix index a269edd666..e38f416b26 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/fstar/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/fstar/default.nix @@ -1,14 +1,14 @@ -{ lib, stdenv, fetchFromGitHub, z3, ocamlPackages, makeWrapper, installShellFiles }: +{ lib, stdenv, writeScript, fetchFromGitHub, z3, ocamlPackages, makeWrapper, installShellFiles }: stdenv.mkDerivation rec { pname = "fstar"; - version = "2022.01.15"; + version = "2022.11.19"; src = fetchFromGitHub { owner = "FStarLang"; repo = "FStar"; rev = "v${version}"; - sha256 = "sha256-bK3McF/wTjT9q6luihPaEXjx7Lu6+ZbQ9G61Mc4KoB0="; + sha256 = "sha256-IJMzRi335RbK8mEXQaF1UDPC0JVi6zSqcz6RS874m3Q="; }; strictDeps = true; @@ -61,6 +61,15 @@ stdenv.mkDerivation rec { installShellCompletion --zsh --name _fstar.exe .completion/zsh/__fstar.exe ''; + passthru.updateScript = writeScript "update-fstar" '' + #!/usr/bin/env nix-shell + #!nix-shell -i bash -p git gnugrep common-updater-scripts + set -eu -o pipefail + + version="$(git ls-remote --tags git@github.com:FStarLang/FStar.git | grep -Po 'v\K\d{4}\.\d{2}\.\d{2}' | sort | tail -n1)" + update-source-version fstar "$version" + ''; + meta = with lib; { description = "ML-like functional programming language aimed at program verification"; homepage = "https://www.fstar-lang.org"; diff --git a/third_party/nixpkgs/pkgs/development/compilers/gcc/4.9/default.nix b/third_party/nixpkgs/pkgs/development/compilers/gcc/4.9/default.nix index 516cdee708..c28ef88ce9 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/gcc/4.9/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/gcc/4.9/default.nix @@ -147,7 +147,7 @@ stdenv.mkDerivation ({ hardeningDisable = [ "format" "pie" ]; - # When targetting darwin, libgcc_ext.10.{4,5}.dylib are created as + # When targeting darwin, libgcc_ext.10.{4,5}.dylib are created as # MH_DYLIB_STUB files, which install_name_tool can't change, so we # get a cycle between $out and $lib. outputs = if langJava || langGo || targetPlatform.isDarwin then ["out" "man" "info"] diff --git a/third_party/nixpkgs/pkgs/development/compilers/ghc/9.2.4.nix b/third_party/nixpkgs/pkgs/development/compilers/ghc/9.2.4.nix index cfbc403a38..68657c9178 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/ghc/9.2.4.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/ghc/9.2.4.nix @@ -194,6 +194,14 @@ stdenv.mkDerivation (rec { extraPrefix = "utils/haddock/"; stripLen = 1; }) + # Don't generate code that doesn't compile when --enable-relocatable is passed to Setup.hs + # Can be removed if the Cabal library included with ghc backports the linked fix + (fetchpatch { + url = "https://github.com/haskell/cabal/commit/6c796218c92f93c95e94d5ec2d077f6956f68e98.patch"; + stripLen = 1; + extraPrefix = "libraries/Cabal/"; + sha256 = "sha256-yRQ6YmMiwBwiYseC5BsrEtDgFbWvst+maGgDtdD0vAY="; + }) ]; postPatch = "patchShebangs ."; diff --git a/third_party/nixpkgs/pkgs/development/compilers/ghc/9.2.5.nix b/third_party/nixpkgs/pkgs/development/compilers/ghc/9.2.5.nix index b7798ad044..12511c7613 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/ghc/9.2.5.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/ghc/9.2.5.nix @@ -194,6 +194,14 @@ stdenv.mkDerivation (rec { extraPrefix = "utils/haddock/"; stripLen = 1; }) + # Don't generate code that doesn't compile when --enable-relocatable is passed to Setup.hs + # Can be removed if the Cabal library included with ghc backports the linked fix + (fetchpatch { + url = "https://github.com/haskell/cabal/commit/6c796218c92f93c95e94d5ec2d077f6956f68e98.patch"; + stripLen = 1; + extraPrefix = "libraries/Cabal/"; + sha256 = "sha256-yRQ6YmMiwBwiYseC5BsrEtDgFbWvst+maGgDtdD0vAY="; + }) ]; postPatch = "patchShebangs ."; diff --git a/third_party/nixpkgs/pkgs/development/compilers/gleam/default.nix b/third_party/nixpkgs/pkgs/development/compilers/gleam/default.nix index 3f31483717..a3c1d5ca72 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/gleam/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/gleam/default.nix @@ -2,13 +2,13 @@ rustPlatform.buildRustPackage rec { pname = "gleam"; - version = "0.25.1"; + version = "0.25.3"; src = fetchFromGitHub { owner = "gleam-lang"; repo = pname; rev = "v${version}"; - sha256 = "sha256-PzvFX1ssBPXhHBNGK38y427HYJ9Q40c4w2mqGZ/2rtI="; + sha256 = "sha256-JT9NUca+DaqxT36heaNKijIuqdnSvrYCfY2uM7wTOGo="; }; nativeBuildInputs = [ pkg-config ]; @@ -16,7 +16,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ Security libiconv ]; - cargoSha256 = "sha256-NeNpT/yOXE70ElawrOGBc4G5bN2ohzYVVUtF4yVCJOo="; + cargoSha256 = "sha256-YPyGCd4//yta3jy5tWB4C5yRgxNbfG+hGF5/QSch/6M="; meta = with lib; { description = "A statically typed language for the Erlang VM"; diff --git a/third_party/nixpkgs/pkgs/development/compilers/graalvm/community-edition/mkGraal.nix b/third_party/nixpkgs/pkgs/development/compilers/graalvm/community-edition/mkGraal.nix index 86de8aae2e..a06cb310e1 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/graalvm/community-edition/mkGraal.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/graalvm/community-edition/mkGraal.nix @@ -16,7 +16,7 @@ # }; # } config - # GraalVM version that will be used unless overriden by `config..version` + # GraalVM version that will be used unless overridden by `config..version` , defaultVersion # Java version used by GraalVM , javaVersion diff --git a/third_party/nixpkgs/pkgs/development/compilers/inklecate/default.nix b/third_party/nixpkgs/pkgs/development/compilers/inklecate/default.nix index 101c77a1c9..58ec15b682 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/inklecate/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/inklecate/default.nix @@ -21,7 +21,7 @@ buildDotnetModule rec { buildInputs = [ stdenv.cc.cc.lib ]; projectFile = "inklecate/inklecate.csproj"; - nugetDeps = if stdenv.isDarwin then ./deps-darwin.nix else ./deps-linux.nix; + nugetDeps = ./deps.nix; executables = [ "inklecate" ]; dotnet-runtime = dotnetCorePackages.runtime_3_1; diff --git a/third_party/nixpkgs/pkgs/development/compilers/inklecate/deps-linux.nix b/third_party/nixpkgs/pkgs/development/compilers/inklecate/deps-linux.nix deleted file mode 100644 index 9252dc6061..0000000000 --- a/third_party/nixpkgs/pkgs/development/compilers/inklecate/deps-linux.nix +++ /dev/null @@ -1,31 +0,0 @@ -{ fetchNuGet }: [ - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Ref"; version = "3.1.10"; sha256 = "0xn4zh7shvijqlr03fqsmps6gz856isd9bg9rk4z2c4599ggal77"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-x64"; version = "3.1.26"; sha256 = "1xyha28nvy9zqanb4ciscm60jls2fcc4c93k1ma6z3hgk6g9nfqr"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Ref"; version = "3.1.0"; sha256 = "08svsiilx9spvjamcnjswv0dlpdrgryhr3asdz7cvnl914gjzq4y"; }) - (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) - (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.1.0"; sha256 = "193xwf33fbm0ni3idxzbr5fdq3i2dlfgihsac9jj7whj0gd902nh"; }) - (fetchNuGet { pname = "NETStandard.Library"; version = "1.6.1"; sha256 = "1z70wvsx2d847a2cjfii7b83pjfs34q05gb037fdjikv5kbagml8"; }) - (fetchNuGet { pname = "NETStandard.Library"; version = "2.0.3"; sha256 = "1fn9fxppfcg4jgypp2pmrpr6awl3qz1xmnri0cygpkwvyx27df1y"; }) - (fetchNuGet { pname = "System.Collections"; version = "4.3.0"; sha256 = "19r4y64dqyrq6k4706dnyhhw7fs24kpp3awak7whzss39dakpxk9"; }) - (fetchNuGet { pname = "System.Diagnostics.Debug"; version = "4.3.0"; sha256 = "00yjlf19wjydyr6cfviaph3vsjzg3d5nvnya26i2fvfg53sknh3y"; }) - (fetchNuGet { pname = "System.Diagnostics.Tools"; version = "4.3.0"; sha256 = "0in3pic3s2ddyibi8cvgl102zmvp9r9mchh82ns9f0ms4basylw1"; }) - (fetchNuGet { pname = "System.Globalization"; 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}) + (fetchNuGet { pname = "runtime.any.System.Runtime"; version = "4.3.0"; sha256 = "1cqh1sv3h5j7ixyb7axxbdkqx6cxy00p4np4j91kpm492rf4s25b"; }) + (fetchNuGet { pname = "runtime.any.System.Text.Encoding"; version = "4.3.0"; sha256 = "0aqqi1v4wx51h51mk956y783wzags13wa7mgqyclacmsmpv02ps3"; }) + (fetchNuGet { pname = "runtime.any.System.Text.Encoding.Extensions"; version = "4.3.0"; sha256 = "0lqhgqi0i8194ryqq6v2gqx0fb86db2gqknbm0aq31wb378j7ip8"; }) + (fetchNuGet { pname = "runtime.any.System.Threading.Tasks"; version = "4.3.0"; sha256 = "03mnvkhskbzxddz4hm113zsch1jyzh2cs450dk3rgfjp8crlw1va"; }) + (fetchNuGet { pname = "runtime.unix.System.Diagnostics.Debug"; version = "4.3.0"; sha256 = "1lps7fbnw34bnh3lm31gs5c0g0dh7548wfmb8zz62v0zqz71msj5"; }) + (fetchNuGet { pname = "runtime.unix.System.Net.Primitives"; version = "4.3.0"; sha256 = "0bdnglg59pzx9394sy4ic66kmxhqp8q8bvmykdxcbs5mm0ipwwm4"; }) + (fetchNuGet { pname = "runtime.unix.System.Runtime.Extensions"; version = "4.3.0"; sha256 = "0pnxxmm8whx38dp6yvwgmh22smknxmqs5n513fc7m4wxvs1bvi4p"; }) (fetchNuGet { pname = "System.Collections"; version = "4.3.0"; sha256 = "19r4y64dqyrq6k4706dnyhhw7fs24kpp3awak7whzss39dakpxk9"; }) (fetchNuGet { pname = "System.Diagnostics.Debug"; version = "4.3.0"; sha256 = "00yjlf19wjydyr6cfviaph3vsjzg3d5nvnya26i2fvfg53sknh3y"; }) (fetchNuGet { pname = "System.Diagnostics.Tools"; version = "4.3.0"; sha256 = "0in3pic3s2ddyibi8cvgl102zmvp9r9mchh82ns9f0ms4basylw1"; }) (fetchNuGet { pname = "System.Globalization"; version = "4.3.0"; sha256 = "1cp68vv683n6ic2zqh2s1fn4c2sd87g5hpp6l4d4nj4536jz98ki"; }) (fetchNuGet { pname = "System.IO"; version = "4.3.0"; sha256 = "05l9qdrzhm4s5dixmx68kxwif4l99ll5gqmh7rqgw554fx0agv5f"; }) - (fetchNuGet { pname = "System.Linq.Expressions"; version = "4.3.0"; sha256 = "0ky2nrcvh70rqq88m9a5yqabsl4fyd17bpr63iy2mbivjs2nyypv"; }) (fetchNuGet { pname = "System.Linq"; version = "4.3.0"; sha256 = "1w0gmba695rbr80l1k2h4mrwzbzsyfl2z4klmpbsvsg5pm4a56s7"; }) + (fetchNuGet { pname = "System.Linq.Expressions"; version = "4.3.0"; sha256 = "0ky2nrcvh70rqq88m9a5yqabsl4fyd17bpr63iy2mbivjs2nyypv"; }) (fetchNuGet { pname = "System.Net.Primitives"; version = "4.3.0"; sha256 = "0c87k50rmdgmxx7df2khd9qj7q35j9rzdmm2572cc55dygmdk3ii"; }) (fetchNuGet { pname = "System.ObjectModel"; version = "4.3.0"; sha256 = "191p63zy5rpqx7dnrb3h7prvgixmk168fhvvkkvhlazncf8r3nc2"; }) + (fetchNuGet { pname = "System.Reflection"; version = "4.3.0"; sha256 = "0xl55k0mw8cd8ra6dxzh974nxif58s3k1rjv1vbd7gjbjr39j11m"; }) (fetchNuGet { pname = "System.Reflection.Extensions"; version = "4.3.0"; sha256 = "02bly8bdc98gs22lqsfx9xicblszr2yan7v2mmw3g7hy6miq5hwq"; }) (fetchNuGet { pname = "System.Reflection.Primitives"; version = "4.3.0"; sha256 = "04xqa33bld78yv5r93a8n76shvc8wwcdgr1qvvjh959g3rc31276"; }) - (fetchNuGet { pname = "System.Reflection"; version = "4.3.0"; sha256 = "0xl55k0mw8cd8ra6dxzh974nxif58s3k1rjv1vbd7gjbjr39j11m"; }) (fetchNuGet { pname = "System.Resources.ResourceManager"; version = "4.3.0"; sha256 = "0sjqlzsryb0mg4y4xzf35xi523s4is4hz9q4qgdvlvgivl7qxn49"; }) - (fetchNuGet { pname = "System.Runtime.Extensions"; 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}) (fetchNuGet { pname = "System.Threading"; version = "4.3.0"; sha256 = "0rw9wfamvhayp5zh3j7p1yfmx9b5khbf4q50d8k5rk993rskfd34"; }) + (fetchNuGet { pname = "System.Threading.Tasks"; version = "4.3.0"; sha256 = "134z3v9abw3a6jsw17xl3f6hqjpak5l682k2vz39spj4kmydg6k7"; }) (fetchNuGet { pname = "System.Xml.ReaderWriter"; version = "4.3.0"; sha256 = "0c47yllxifzmh8gq6rq6l36zzvw4kjvlszkqa9wq3fr59n0hl3s1"; }) (fetchNuGet { pname = "System.Xml.XDocument"; version = "4.3.0"; sha256 = "08h8fm4l77n0nd4i4fk2386y809bfbwqb7ih9d7564ifcxr5ssxd"; }) ] diff --git a/third_party/nixpkgs/pkgs/development/compilers/jrsonnet/default.nix b/third_party/nixpkgs/pkgs/development/compilers/jrsonnet/default.nix index 696f7acb33..ffbd1c22d4 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/jrsonnet/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/jrsonnet/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, rustPlatform, installShellFiles }: +{ lib, rustPlatform, fetchFromGitHub, installShellFiles }: rustPlatform.buildRustPackage rec { pname = "jrsonnet"; @@ -11,8 +11,15 @@ rustPlatform.buildRustPackage rec { sha256 = "sha256-OX+iJJ3vdCsWWr8x31psV9Vne6xWDZnJc83NbJqMK1A="; }; + cargoSha256 = "sha256-eFfAU9Q3nYAJK+kKP1Y6ONjOIfkuYTlelrFrEW9IJ8c="; + nativeBuildInputs = [ installShellFiles ]; + # skip flaky tests + checkFlags = [ + "--skip=tests::native_ext" + ]; + postInstall = '' ln -s $out/bin/jrsonnet $out/bin/jsonnet @@ -24,13 +31,10 @@ rustPlatform.buildRustPackage rec { done ''; - cargoSha256 = "sha256-eFfAU9Q3nYAJK+kKP1Y6ONjOIfkuYTlelrFrEW9IJ8c="; - - meta = { + meta = with lib; { description = "Purely-functional configuration language that helps you define JSON data"; - maintainers = with lib.maintainers; [ lach ]; - license = lib.licenses.mit; homepage = "https://github.com/CertainLach/jrsonnet"; - broken = stdenv.isDarwin; # never built on Hydra https://hydra.nixos.org/job/nixpkgs/trunk/jrsonnet.x86_64-darwin + license = licenses.mit; + maintainers = with maintainers; [ figsoda lach ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/compilers/julia/1.8-bin.nix b/third_party/nixpkgs/pkgs/development/compilers/julia/1.8-bin.nix index 325ed73e2d..b72cb8f187 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/julia/1.8-bin.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/julia/1.8-bin.nix @@ -2,16 +2,16 @@ stdenv.mkDerivation rec { pname = "julia-bin"; - version = "1.8.3"; + version = "1.8.4"; src = { x86_64-linux = fetchurl { url = "https://julialang-s3.julialang.org/bin/linux/x64/${lib.versions.majorMinor version}/julia-${version}-linux-x86_64.tar.gz"; - sha256 = "sha256-M8Owk1b/qiXTMxw2RrHy1LCZROj5P8uZSVeAG4u/WKk="; + sha256 = "sha256-8EJ6TXkQxH3Hwx9lun7Kr+27wOzrOcMgo3+jNZgAT9U="; }; aarch64-linux = fetchurl { url = "https://julialang-s3.julialang.org/bin/linux/aarch64/${lib.versions.majorMinor version}/julia-${version}-linux-aarch64.tar.gz"; - sha256 = "sha256-2/+xNKQTtxLUqOHujmZepV7bCGVxmhutmXkSPWQzrMk="; + sha256 = "sha256-3EeYwc6HaPo1ly6LFJyjqF/GnhB0tgmnKyz+1cSqcFA="; }; }.${stdenv.hostPlatform.system} or (throw "Unsupported system: ${stdenv.hostPlatform.system}"); diff --git a/third_party/nixpkgs/pkgs/development/compilers/julia/1.8.nix b/third_party/nixpkgs/pkgs/development/compilers/julia/1.8.nix index 708e04971c..643e762ab1 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/julia/1.8.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/julia/1.8.nix @@ -1,53 +1,29 @@ { lib , stdenv , fetchurl -, fetchpatch , which , python3 , gfortran -, gcc , cmake , perl , gnum4 -, libwhich , libxml2 -, libunwind -, curl -, gmp -, suitesparse -, utf8proc -, zlib -, p7zip -, ncurses +, openssl }: stdenv.mkDerivation rec { pname = "julia"; - version = "1.8.3"; + version = "1.8.4"; src = fetchurl { url = "https://github.com/JuliaLang/julia/releases/download/v${version}/julia-${version}-full.tar.gz"; - hash = "sha256-UraJWp1K0v422yYe6MTIzJISuDehL5MAL6r1N6IVH1A="; + hash = "sha256-HNAyJixcQgSKeBm8zWhOhDu7j2bPn/VsMViB6kMfADM="; }; - patches = - let - path = name: "https://raw.githubusercontent.com/archlinux/svntogit-community/6fd126d089d44fdc875c363488a7c7435a223cec/trunk/${name}"; - in - [ - (fetchurl { - url = path "julia-hardcoded-libs.patch"; - sha256 = "sha256-kppSpVA7bRohd0wXDs4Jgct9ocHnpbeiiSz7ElFom1U="; - }) - (fetchurl { - url = path "julia-libunwind-1.6.patch"; - sha256 = "sha256-zqMh9+Fjgd15XuINe9Xtpk+bRTwB0T6WCWLrJyOQfiQ="; - }) - ./patches/1.8/0001-skip-symlink-system-libraries.patch - ./patches/1.8/0002-skip-building-doc.patch - ./patches/1.8/0003-skip-failing-tests.patch - ./patches/1.8/0004-ignore-absolute-path-when-loading-library.patch - ]; + patches = [ + ./patches/1.8/0001-skip-building-doc.patch + ./patches/1.8/0002-skip-failing-and-flaky-tests.patch + ]; nativeBuildInputs = [ which @@ -56,56 +32,24 @@ stdenv.mkDerivation rec { cmake perl gnum4 - libwhich ]; buildInputs = [ libxml2 - libunwind - curl - gmp - utf8proc - zlib - p7zip + openssl ]; - JULIA_RPATH = lib.makeLibraryPath (buildInputs ++ [ stdenv.cc.cc gfortran.cc ncurses ]); - dontUseCmakeConfigure = true; postPatch = '' patchShebangs . ''; - LDFLAGS = "-Wl,-rpath,${JULIA_RPATH}"; - makeFlags = [ "prefix=$(out)" "USE_BINARYBUILDER=0" - "USE_SYSTEM_CSL=1" - "USE_SYSTEM_LLVM=0" # a patched version is required - "USE_SYSTEM_LIBUNWIND=1" - "USE_SYSTEM_PCRE=0" # version checks - "USE_SYSTEM_LIBM=0" - "USE_SYSTEM_OPENLIBM=0" - "USE_SYSTEM_DSFMT=0" # not available in nixpkgs - "USE_SYSTEM_LIBBLASTRAMPOLINE=0" # not available in nixpkgs - "USE_SYSTEM_BLAS=0" # test failure - "USE_SYSTEM_LAPACK=0" # test failure - "USE_SYSTEM_GMP=1" # version checks, but bundled version fails build - "USE_SYSTEM_MPFR=0" # version checks - "USE_SYSTEM_LIBSUITESPARSE=0" # test failure - "USE_SYSTEM_LIBUV=0" # a patched version is required - "USE_SYSTEM_UTF8PROC=1" - "USE_SYSTEM_MBEDTLS=0" # version checks - "USE_SYSTEM_LIBSSH2=0" # version checks - "USE_SYSTEM_NGHTTP2=0" # version checks - "USE_SYSTEM_CURL=1" - "USE_SYSTEM_LIBGIT2=0" # version checks - "USE_SYSTEM_PATCHELF=1" - "USE_SYSTEM_LIBWHICH=1" - "USE_SYSTEM_ZLIB=1" # version checks, but the system zlib is used anyway - "USE_SYSTEM_P7ZIP=1" + # workaround for https://github.com/JuliaLang/julia/issues/47989 + "USE_INTEL_JITEVENTS=0" ] ++ lib.optionals stdenv.isx86_64 [ # https://github.com/JuliaCI/julia-buildbot/blob/master/master/inventory.py "JULIA_CPU_TARGET=generic;sandybridge,-xsaveopt,clone_all;haswell,-rdrnd,base(1)" @@ -113,6 +57,13 @@ stdenv.mkDerivation rec { "JULIA_CPU_TERGET=generic;cortex-a57;thunderx2t99;armv8.2-a,crypto,fullfp16,lse,rdm" ]; + # remove forbidden reference to $TMPDIR + preFixup = '' + for file in libcurl.so libgmpxx.so; do + patchelf --shrink-rpath --allowed-rpath-prefixes ${builtins.storeDir} "$out/lib/julia/$file" + done + ''; + doInstallCheck = true; installCheckTarget = "testall"; @@ -123,12 +74,6 @@ stdenv.mkDerivation rec { dontStrip = true; - postFixup = '' - for file in $out/bin/julia $out/lib/libjulia.so $out/lib/julia/libjulia-internal.so $out/lib/julia/libjulia-codegen.so; do - patchelf --set-rpath "$out/lib:$out/lib/julia:${JULIA_RPATH}" $file - done - ''; - enableParallelBuilding = true; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0002-skip-building-doc.patch b/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0001-skip-building-doc.patch similarity index 77% rename from third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0002-skip-building-doc.patch rename to third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0001-skip-building-doc.patch index 642d561322..3b507bf26d 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0002-skip-building-doc.patch +++ b/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0001-skip-building-doc.patch @@ -1,14 +1,14 @@ -From ddf422a97973a1f4d2d4d32272396c7165580702 Mon Sep 17 00:00:00 2001 +From ce73c82ebadeb2e358e1a8e244eef723ffa96c76 Mon Sep 17 00:00:00 2001 From: Nick Cao Date: Tue, 20 Sep 2022 18:42:31 +0800 -Subject: [PATCH 2/4] skip building doc +Subject: [PATCH 1/2] skip building doc --- Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Makefile b/Makefile -index 57b595310..563be74c9 100644 +index 94df626014..418f6ff268 100644 --- a/Makefile +++ b/Makefile @@ -229,7 +229,7 @@ define stringreplace diff --git a/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0001-skip-symlink-system-libraries.patch b/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0001-skip-symlink-system-libraries.patch deleted file mode 100644 index 01c32ae6d8..0000000000 --- a/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0001-skip-symlink-system-libraries.patch +++ /dev/null @@ -1,32 +0,0 @@ -From b2a58160fd194858267c433ae551f24840a0b3f4 Mon Sep 17 00:00:00 2001 -From: Nick Cao -Date: Tue, 20 Sep 2022 18:42:08 +0800 -Subject: [PATCH 1/4] skip symlink system libraries - ---- - base/Makefile | 2 -- - 1 file changed, 2 deletions(-) - -diff --git a/base/Makefile b/base/Makefile -index 23a9c4011..12f92aa05 100644 ---- a/base/Makefile -+++ b/base/Makefile -@@ -181,7 +181,6 @@ $$(build_private_libdir)/$$(libname_$2): - fi; \ - fi - ifneq ($$(USE_SYSTEM_$1),0) --SYMLINK_SYSTEM_LIBRARIES += symlink_$2 - endif - endef - -@@ -265,7 +264,6 @@ $(build_private_libdir)/libLLVM.$(SHLIB_EXT): - ln -sf "$$REALPATH" "$@" - ifneq ($(USE_SYSTEM_LLVM),0) - ifneq ($(USE_LLVM_SHLIB),0) --SYMLINK_SYSTEM_LIBRARIES += symlink_libLLVM - endif - endif - --- -2.38.1 - diff --git a/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0003-skip-failing-tests.patch b/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0002-skip-failing-and-flaky-tests.patch similarity index 74% rename from third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0003-skip-failing-tests.patch rename to third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0002-skip-failing-and-flaky-tests.patch index 337b1390a6..966c805ad7 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0003-skip-failing-tests.patch +++ b/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0002-skip-failing-and-flaky-tests.patch @@ -1,14 +1,14 @@ -From f91c8c6364eb321dd5e66fa443472fca6bcda7d6 Mon Sep 17 00:00:00 2001 +From 0e1fe51ce93847ac3c4de49a003d9762b2f3d7c6 Mon Sep 17 00:00:00 2001 From: Nick Cao Date: Tue, 20 Sep 2022 18:42:59 +0800 -Subject: [PATCH 3/4] skip failing tests +Subject: [PATCH 2/2] skip failing and flaky tests --- test/Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/test/Makefile b/test/Makefile -index 24e137a5b..2b30ab392 100644 +index 24e137a5b1..e78f12da04 100644 --- a/test/Makefile +++ b/test/Makefile @@ -23,7 +23,7 @@ default: @@ -16,7 +16,7 @@ index 24e137a5b..2b30ab392 100644 $(TESTS): @cd $(SRCDIR) && \ - $(call PRINT_JULIA, $(call spawn,$(JULIA_EXECUTABLE)) --check-bounds=yes --startup-file=no --depwarn=error ./runtests.jl $@) -+ $(call PRINT_JULIA, $(call spawn,$(JULIA_EXECUTABLE)) --check-bounds=yes --startup-file=no --depwarn=error ./runtests.jl --skip MozillaCACerts_jll --skip NetworkOptions --skip Zlib_jll --skip GMP_jll $@) ++ $(call PRINT_JULIA, $(call spawn,$(JULIA_EXECUTABLE)) --check-bounds=yes --startup-file=no --depwarn=error ./runtests.jl --skip MozillaCACerts_jll --skip NetworkOptions --skip channels $@) $(addprefix revise-, $(TESTS)): revise-% : @cd $(SRCDIR) && \ diff --git a/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0003-skip-failing-and-flaky-tests.patch b/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0003-skip-failing-and-flaky-tests.patch deleted file mode 100644 index ad3d78742a..0000000000 --- a/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0003-skip-failing-and-flaky-tests.patch +++ /dev/null @@ -1,25 +0,0 @@ -From ed596b33005a438109f0078ed0ba30ebe464b4b5 Mon Sep 17 00:00:00 2001 -From: Nick Cao -Date: Tue, 20 Sep 2022 18:42:59 +0800 -Subject: [PATCH 3/4] skip failing and flaky tests - ---- - test/Makefile | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/test/Makefile b/test/Makefile -index 24e137a5b..553d9d095 100644 ---- a/test/Makefile -+++ b/test/Makefile -@@ -23,7 +23,7 @@ default: - - $(TESTS): - @cd $(SRCDIR) && \ -- $(call PRINT_JULIA, $(call spawn,$(JULIA_EXECUTABLE)) --check-bounds=yes --startup-file=no --depwarn=error ./runtests.jl $@) -+ $(call PRINT_JULIA, $(call spawn,$(JULIA_EXECUTABLE)) --check-bounds=yes --startup-file=no --depwarn=error ./runtests.jl --skip MozillaCACerts_jll --skip NetworkOptions --skip Zlib_jll --skip GMP_jll --skip channels $@) - - $(addprefix revise-, $(TESTS)): revise-% : - @cd $(SRCDIR) && \ --- -2.38.1 - diff --git a/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0004-ignore-absolute-path-when-loading-library.patch b/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0004-ignore-absolute-path-when-loading-library.patch deleted file mode 100644 index b458f7fc29..0000000000 --- a/third_party/nixpkgs/pkgs/development/compilers/julia/patches/1.8/0004-ignore-absolute-path-when-loading-library.patch +++ /dev/null @@ -1,27 +0,0 @@ -From 4bd87f2f3151ad07d311f7d33c2b890977aca93d Mon Sep 17 00:00:00 2001 -From: Nick Cao -Date: Tue, 20 Sep 2022 18:43:15 +0800 -Subject: [PATCH 4/4] ignore absolute path when loading library - ---- - cli/loader_lib.c | 4 +--- - 1 file changed, 1 insertion(+), 3 deletions(-) - -diff --git a/cli/loader_lib.c b/cli/loader_lib.c -index 0301b6eed..5cbda61af 100644 ---- a/cli/loader_lib.c -+++ b/cli/loader_lib.c -@@ -50,9 +50,7 @@ static void * load_library(const char * rel_path, const char * src_dir, int err) - #endif - - char path[2*JL_PATH_MAX + 1] = {0}; -- strncat(path, src_dir, sizeof(path) - 1); -- strncat(path, PATHSEPSTRING, sizeof(path) - 1); -- strncat(path, rel_path, sizeof(path) - 1); -+ strncat(path, basename, sizeof(path) - 1); - - #if defined(_OS_WINDOWS_) - wchar_t wpath[2*JL_PATH_MAX + 1] = {0}; --- -2.38.1 - diff --git a/third_party/nixpkgs/pkgs/development/compilers/ligo/default.nix b/third_party/nixpkgs/pkgs/development/compilers/ligo/default.nix index f0edb4815d..16e1cb0020 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/ligo/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/ligo/default.nix @@ -1,4 +1,5 @@ -{ lib +{ stdenv +, lib , fetchFromGitLab , git , coq @@ -9,12 +10,12 @@ ocamlPackages.buildDunePackage rec { pname = "ligo"; - version = "0.55.0"; + version = "0.58.0"; src = fetchFromGitLab { owner = "ligolang"; repo = "ligo"; rev = version; - sha256 = "sha256-GEw9OEHXdTxBvb5ATIcL71wdUCLD+X/A7CYQxwTUQWw="; + sha256 = "sha256-WhqCkPkXHjWS8BDh13ODrHg2AHJ8CBfksTH4Fxx4xek="; fetchSubmodules = true; }; @@ -108,6 +109,7 @@ ocamlPackages.buildDunePackage rec { description = "A friendly Smart Contract Language for Tezos"; license = licenses.mit; platforms = ocamlPackages.ocaml.meta.platforms; + broken = stdenv.isLinux && stdenv.isAarch64; maintainers = with maintainers; [ ulrikstrid ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/compilers/llvm/10/llvm/default.nix b/third_party/nixpkgs/pkgs/development/compilers/llvm/10/llvm/default.nix index 78b0adcaad..95eba5d7fb 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/llvm/10/llvm/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/llvm/10/llvm/default.nix @@ -16,10 +16,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? true }: diff --git a/third_party/nixpkgs/pkgs/development/compilers/llvm/11/llvm/default.nix b/third_party/nixpkgs/pkgs/development/compilers/llvm/11/llvm/default.nix index 1623d06c7f..2123efdf23 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/llvm/11/llvm/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/llvm/11/llvm/default.nix @@ -16,10 +16,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false # TODO should be on by default }: diff --git a/third_party/nixpkgs/pkgs/development/compilers/llvm/12/llvm/default.nix b/third_party/nixpkgs/pkgs/development/compilers/llvm/12/llvm/default.nix index d330b73875..b04eeb3c72 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/llvm/12/llvm/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/llvm/12/llvm/default.nix @@ -16,10 +16,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false }: diff --git a/third_party/nixpkgs/pkgs/development/compilers/llvm/13/llvm/default.nix b/third_party/nixpkgs/pkgs/development/compilers/llvm/13/llvm/default.nix index 5b8ec69853..0cdc79a4a5 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/llvm/13/llvm/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/llvm/13/llvm/default.nix @@ -17,10 +17,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false }: diff --git a/third_party/nixpkgs/pkgs/development/compilers/llvm/14/llvm/default.nix b/third_party/nixpkgs/pkgs/development/compilers/llvm/14/llvm/default.nix index 673cd31460..1134f0a6ab 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/llvm/14/llvm/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/llvm/14/llvm/default.nix @@ -18,10 +18,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false } @args: diff --git a/third_party/nixpkgs/pkgs/development/compilers/llvm/7/llvm/default.nix b/third_party/nixpkgs/pkgs/development/compilers/llvm/7/llvm/default.nix index 1aa85f543e..da72bb8b35 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/llvm/7/llvm/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/llvm/7/llvm/default.nix @@ -16,10 +16,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder - ) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false }: diff --git a/third_party/nixpkgs/pkgs/development/compilers/llvm/8/llvm/default.nix b/third_party/nixpkgs/pkgs/development/compilers/llvm/8/llvm/default.nix index 3e01c7ac9c..5c381a896e 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/llvm/8/llvm/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/llvm/8/llvm/default.nix @@ -16,10 +16,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false }: diff --git a/third_party/nixpkgs/pkgs/development/compilers/llvm/9/llvm/default.nix b/third_party/nixpkgs/pkgs/development/compilers/llvm/9/llvm/default.nix index 6c0a37cadd..f8b6a8170f 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/llvm/9/llvm/default.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/llvm/9/llvm/default.nix @@ -16,10 +16,9 @@ , debugVersion ? false , enableManpages ? false , enableSharedLibraries ? !stdenv.hostPlatform.isStatic -, enablePFM ? !(stdenv.isDarwin - || stdenv.isAarch64 # broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 - || stdenv.isAarch32 # broken for the armv7l builder -) +# broken for Ampere eMAG 8180 (c2.large.arm on Packet) #56245 +# broken for the armv7l builder +, enablePFM ? stdenv.isLinux && !stdenv.hostPlatform.isAarch , enablePolly ? false }: diff --git a/third_party/nixpkgs/pkgs/development/compilers/ocaml/5.0.nix b/third_party/nixpkgs/pkgs/development/compilers/ocaml/5.0.nix index b5fbb8dae4..390bb151b7 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/ocaml/5.0.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/ocaml/5.0.nix @@ -1,9 +1,6 @@ import ./generic.nix { major_version = "5"; minor_version = "0"; - patch_version = "0-rc1"; - src = fetchTarball { - url = "https://caml.inria.fr/pub/distrib/ocaml-5.0/ocaml-5.0.0~rc1.tar.xz"; - sha256 = "sha256:1ql9rmh2g9fhfv99vk9sdca1biiin32vi4idgdgl668n0vb8blw8"; - }; + patch_version = "0"; + sha256 = "sha256-yxfwpTTdSz/sk9ARsL4bpcYIfaAzz3iehaNLlkHsxl8="; } diff --git a/third_party/nixpkgs/pkgs/development/compilers/openjdk/18.nix b/third_party/nixpkgs/pkgs/development/compilers/openjdk/18.nix index 5be60eb948..600899677f 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/openjdk/18.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/openjdk/18.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, fetchFromGitHub, bash, pkg-config, autoconf, cpio +{ stdenv, lib, fetchurl, fetchpatch, fetchFromGitHub, bash, pkg-config, autoconf, cpio , file, which, unzip, zip, perl, cups, freetype, harfbuzz, alsa-lib, libjpeg, giflib , libpng, zlib, lcms2, libX11, libICE, libXrender, libXext, libXt, libXtst , libXi, libXinerama, libXcursor, libXrandr, fontconfig, openjdk18-bootstrap @@ -49,6 +49,13 @@ let url = "https://src.fedoraproject.org/rpms/java-openjdk/raw/06c001c7d87f2e9fe4fedeef2d993bcd5d7afa2a/f/rh1673833-remove_removal_of_wformat_during_test_compilation.patch"; sha256 = "082lmc30x64x583vqq00c8y0wqih3y4r0mp1c4bqq36l22qv6b6r"; }) + + # Patch borrowed from Alpine to fix build errors with musl libc and recent gcc. + # This is applied anywhere to prevent patchrot. + (fetchpatch { + url = "https://git.alpinelinux.org/aports/plain/testing/openjdk18/FixNullPtrCast.patch?id=b93d1fc37fcf106144958d957bb97c7db67bd41f"; + hash = "sha256-nvO8RcmKwMcPdzq28mZ4If1XJ6FQ76CYWqRIozPCk5U="; + }) ] ++ lib.optionals (!headless && enableGnome2) [ ./swing-use-gtk-jdk13.patch ]; diff --git a/third_party/nixpkgs/pkgs/development/compilers/openjdk/19.nix b/third_party/nixpkgs/pkgs/development/compilers/openjdk/19.nix index 11b2fa60c7..87c978ec83 100644 --- a/third_party/nixpkgs/pkgs/development/compilers/openjdk/19.nix +++ b/third_party/nixpkgs/pkgs/development/compilers/openjdk/19.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, fetchFromGitHub, bash, pkg-config, autoconf, cpio +{ stdenv, lib, fetchurl, fetchpatch, fetchFromGitHub, bash, pkg-config, autoconf, cpio , file, which, unzip, zip, perl, cups, freetype, alsa-lib, libjpeg, giflib , libpng, zlib, lcms2, libX11, libICE, libXrender, libXext, libXt, libXtst , libXi, libXinerama, libXcursor, libXrandr, fontconfig, openjdk19-bootstrap @@ -51,6 +51,13 @@ let url = "https://src.fedoraproject.org/rpms/java-openjdk/raw/06c001c7d87f2e9fe4fedeef2d993bcd5d7afa2a/f/rh1673833-remove_removal_of_wformat_during_test_compilation.patch"; sha256 = "082lmc30x64x583vqq00c8y0wqih3y4r0mp1c4bqq36l22qv6b6r"; }) + + # Patch borrowed from Alpine to fix build errors with musl libc and recent gcc. + # This is applied anywhere to prevent patchrot. + (fetchpatch { + url = "https://git.alpinelinux.org/aports/plain/testing/openjdk19/FixNullPtrCast.patch?id=b93d1fc37fcf106144958d957bb97c7db67bd41f"; + hash = "sha256-cnpeYcVoRYjuDgrl2x27frv6KUAnu1+1MVPehPZy/Cg="; + }) ] ++ lib.optionals (!headless && enableGnome2) [ ./swing-use-gtk-jdk13.patch ]; diff --git a/third_party/nixpkgs/pkgs/development/coq-modules/Cheerios/default.nix b/third_party/nixpkgs/pkgs/development/coq-modules/Cheerios/default.nix index d7763d87c9..5c79969c75 100644 --- a/third_party/nixpkgs/pkgs/development/coq-modules/Cheerios/default.nix +++ b/third_party/nixpkgs/pkgs/development/coq-modules/Cheerios/default.nix @@ -9,5 +9,9 @@ with lib; mkCoqDerivation { release."20200201".sha256 = "1h55s6lk47bk0lv5ralh81z55h799jbl9mhizmqwqzy57y8wqgs1"; propagatedBuildInputs = [ StructTact ]; - preConfigure = "patchShebangs ./configure"; + preConfigure = '' + if [ -f ./configure ]; then + patchShebangs ./configure + fi + ''; } diff --git a/third_party/nixpkgs/pkgs/development/coq-modules/InfSeqExt/default.nix b/third_party/nixpkgs/pkgs/development/coq-modules/InfSeqExt/default.nix index 1f11ae8e84..7f21386c86 100644 --- a/third_party/nixpkgs/pkgs/development/coq-modules/InfSeqExt/default.nix +++ b/third_party/nixpkgs/pkgs/development/coq-modules/InfSeqExt/default.nix @@ -7,5 +7,9 @@ mkCoqDerivation { defaultVersion = if lib.versions.isGe "8.5" coq.version then "20200131" else null; release."20200131".rev = "203d4c20211d6b17741f1fdca46dbc091f5e961a"; release."20200131".sha256 = "0xylkdmb2dqnnqinf3pigz4mf4zmczcbpjnn59g5g76m7f2cqxl0"; - preConfigure = "patchShebangs ./configure"; + preConfigure = '' + if [ -f ./configure ]; then + patchShebangs ./configure + fi + ''; } diff --git a/third_party/nixpkgs/pkgs/development/coq-modules/StructTact/default.nix b/third_party/nixpkgs/pkgs/development/coq-modules/StructTact/default.nix index 6618e75bab..3fb8a42cfb 100644 --- a/third_party/nixpkgs/pkgs/development/coq-modules/StructTact/default.nix +++ b/third_party/nixpkgs/pkgs/development/coq-modules/StructTact/default.nix @@ -12,5 +12,9 @@ with lib; mkCoqDerivation { release."20210328".sha256 = "sha256:1y5r1zm3hli10ah6lnj7n8hxad6rb6rgldd0g7m2fjibzvwqzhdg"; release."20181102".rev = "82a85b7ec07e71fa6b30cfc05f6a7bfb09ef2510"; release."20181102".sha256 = "08zry20flgj7qq37xk32kzmg4fg6d4wi9m7pf9aph8fd3j2a0b5v"; - preConfigure = "patchShebangs ./configure"; + preConfigure = '' + if [ -f ./configure ]; then + patchShebangs ./configure + fi + ''; } diff --git a/third_party/nixpkgs/pkgs/development/coq-modules/VST/default.nix b/third_party/nixpkgs/pkgs/development/coq-modules/VST/default.nix index b726a81c24..8a4243a870 100644 --- a/third_party/nixpkgs/pkgs/development/coq-modules/VST/default.nix +++ b/third_party/nixpkgs/pkgs/development/coq-modules/VST/default.nix @@ -25,10 +25,12 @@ mkCoqDerivation { repo = "VST"; inherit version; defaultVersion = with versions; switch coq.coq-version [ + { case = range "8.15" "8.16"; out = "2.11.1"; } { case = range "8.14" "8.16"; out = "2.10"; } { case = range "8.13" "8.15"; out = "2.9"; } { case = range "8.12" "8.13"; out = "2.8"; } ] null; + release."2.11.1".sha256 = "sha256-unpNstZBnRT4dIqAYOv9n1J0tWJMeRuaaa2RG1U0Xs0="; release."2.10".sha256 = "sha256-RIxfPWoHnV1CFkpxCusoGY/LIk07TgC7wWGRP4BSq8w="; release."2.9".sha256 = "sha256:1adwzbl1pprrrwrm7cm493098fizxanxpv7nyfbvwdhgbhcnv6qf"; release."2.8".sha256 = "sha256-cyK88uzorRfjapNQ6XgQEmlbWnDsiyLve5po1VG52q0="; diff --git a/third_party/nixpkgs/pkgs/development/coq-modules/Verdi/default.nix b/third_party/nixpkgs/pkgs/development/coq-modules/Verdi/default.nix index 190758855f..80b964b390 100644 --- a/third_party/nixpkgs/pkgs/development/coq-modules/Verdi/default.nix +++ b/third_party/nixpkgs/pkgs/development/coq-modules/Verdi/default.nix @@ -21,5 +21,9 @@ with lib; mkCoqDerivation { release."20181102".sha256 = "1vw47c37k5vaa8vbr6ryqy8riagngwcrfmb3rai37yi9xhdqg55z"; propagatedBuildInputs = [ Cheerios InfSeqExt ssreflect ]; - preConfigure = "patchShebangs ./configure"; + preConfigure = '' + if [ -f ./configure ]; then + patchShebangs ./configure + fi + ''; } diff --git a/third_party/nixpkgs/pkgs/development/dotnet-modules/boogie-deps.nix b/third_party/nixpkgs/pkgs/development/dotnet-modules/boogie-deps.nix index 251b82a8fe..c0bd976200 100644 --- a/third_party/nixpkgs/pkgs/development/dotnet-modules/boogie-deps.nix +++ b/third_party/nixpkgs/pkgs/development/dotnet-modules/boogie-deps.nix @@ -1,3 +1,6 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ (fetchNuGet { pname = "Microsoft.Bcl.AsyncInterfaces"; version = "6.0.0"; sha256 = "15gqy2m14fdlvy1g59207h5kisznm355kbw010gy19vh47z8gpz3"; }) (fetchNuGet { pname = "Microsoft.CodeCoverage"; version = "16.2.0"; sha256 = "07h1ylca2j7a4hznq4m4b8nrzv1lw7gcf848k2a3nbm6rapv61ki"; }) @@ -20,14 +23,51 @@ (fetchNuGet { pname = "Newtonsoft.Json"; version = "9.0.1"; sha256 = "0mcy0i7pnfpqm4pcaiyzzji4g0c8i3a5gjz28rrr28110np8304r"; }) (fetchNuGet { pname = "NUnit"; version = "3.12.0"; sha256 = "1880j2xwavi8f28vxan3hyvdnph4nlh5sbmh285s4lc9l0b7bdk2"; }) (fetchNuGet { pname = "NUnit3TestAdapter"; version = "3.15.1"; sha256 = "1nhpvzxbxgymmkb3bd5ci40rg8k71bfx2ghbgc99znvnvhf2034y"; }) + (fetchNuGet { pname = "runtime.any.System.Collections"; version = "4.3.0"; sha256 = "0bv5qgm6vr47ynxqbnkc7i797fdi8gbjjxii173syrx14nmrkwg0"; }) + (fetchNuGet { pname = "runtime.any.System.Diagnostics.Tools"; version = "4.3.0"; sha256 = "1wl76vk12zhdh66vmagni66h5xbhgqq7zkdpgw21jhxhvlbcl8pk"; }) + (fetchNuGet { pname = "runtime.any.System.Diagnostics.Tracing"; version = "4.3.0"; sha256 = "00j6nv2xgmd3bi347k00m7wr542wjlig53rmj28pmw7ddcn97jbn"; }) + (fetchNuGet { pname = "runtime.any.System.Globalization"; version = "4.3.0"; sha256 = "1daqf33hssad94lamzg01y49xwndy2q97i2lrb7mgn28656qia1x"; }) + (fetchNuGet { pname = "runtime.any.System.Globalization.Calendars"; version = "4.3.0"; sha256 = "1ghhhk5psqxcg6w88sxkqrc35bxcz27zbqm2y5p5298pv3v7g201"; }) + (fetchNuGet { pname = "runtime.any.System.IO"; version = "4.3.0"; sha256 = "0l8xz8zn46w4d10bcn3l4yyn4vhb3lrj2zw8llvz7jk14k4zps5x"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection"; version = "4.3.0"; sha256 = "02c9h3y35pylc0zfq3wcsvc5nqci95nrkq0mszifc0sjx7xrzkly"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection.Extensions"; version = "4.3.0"; sha256 = "0zyri97dfc5vyaz9ba65hjj1zbcrzaffhsdlpxc9bh09wy22fq33"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection.Primitives"; version = "4.3.0"; sha256 = "0x1mm8c6iy8rlxm8w9vqw7gb7s1ljadrn049fmf70cyh42vdfhrf"; }) + (fetchNuGet { pname = "runtime.any.System.Resources.ResourceManager"; version = "4.3.0"; sha256 = "03kickal0iiby82wa5flar18kyv82s9s6d4xhk5h4bi5kfcyfjzl"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime"; version = "4.3.0"; sha256 = "1cqh1sv3h5j7ixyb7axxbdkqx6cxy00p4np4j91kpm492rf4s25b"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime.Handles"; version = "4.3.0"; sha256 = "0bh5bi25nk9w9xi8z23ws45q5yia6k7dg3i4axhfqlnj145l011x"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime.InteropServices"; version = "4.3.0"; sha256 = "0c3g3g3jmhlhw4klrc86ka9fjbl7i59ds1fadsb2l8nqf8z3kb19"; }) + (fetchNuGet { pname = "runtime.any.System.Text.Encoding"; version = "4.3.0"; sha256 = "0aqqi1v4wx51h51mk956y783wzags13wa7mgqyclacmsmpv02ps3"; }) + (fetchNuGet { pname = "runtime.any.System.Text.Encoding.Extensions"; version = "4.3.0"; sha256 = "0lqhgqi0i8194ryqq6v2gqx0fb86db2gqknbm0aq31wb378j7ip8"; }) + (fetchNuGet { pname = "runtime.any.System.Threading.Tasks"; version = "4.3.0"; sha256 = "03mnvkhskbzxddz4hm113zsch1jyzh2cs450dk3rgfjp8crlw1va"; }) + (fetchNuGet { pname = "runtime.any.System.Threading.Timer"; version = "4.3.0"; sha256 = "0aw4phrhwqz9m61r79vyfl5la64bjxj8l34qnrcwb28v49fg2086"; }) + (fetchNuGet { pname = "runtime.debian.8-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "16rnxzpk5dpbbl1x354yrlsbvwylrq456xzpsha1n9y3glnhyx9d"; }) + (fetchNuGet { pname = "runtime.fedora.23-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0hkg03sgm2wyq8nqk6dbm9jh5vcq57ry42lkqdmfklrw89lsmr59"; }) + (fetchNuGet { pname = "runtime.fedora.24-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0c2p354hjx58xhhz7wv6div8xpi90sc6ibdm40qin21bvi7ymcaa"; }) (fetchNuGet { pname = "runtime.native.System"; version = "4.0.0"; sha256 = "1ppk69xk59ggacj9n7g6fyxvzmk1g5p4fkijm0d7xqfkig98qrkf"; }) (fetchNuGet { pname = "runtime.native.System"; version = "4.3.0"; sha256 = "15hgf6zaq9b8br2wi1i3x0zvmk410nlmsmva9p0bbg73v6hml5k4"; }) (fetchNuGet { pname = "runtime.native.System.IO.Compression"; version = "4.1.0"; sha256 = 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"runtime.osx.10.10-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0zcxjv5pckplvkg0r6mw3asggm7aqzbdjimhvsasb0cgm59x09l3"; }) + (fetchNuGet { pname = "runtime.rhel.7-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0vhynn79ih7hw7cwjazn87rm9z9fj0rvxgzlab36jybgcpcgphsn"; }) + (fetchNuGet { pname = "runtime.ubuntu.14.04-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "160p68l2c7cqmyqjwxydcvgw7lvl1cr0znkw8fp24d1by9mqc8p3"; }) + (fetchNuGet { pname = "runtime.ubuntu.16.04-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "15zrc8fgd8zx28hdghcj5f5i34wf3l6bq5177075m2bc2j34jrqy"; }) + (fetchNuGet { pname = "runtime.ubuntu.16.10-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "1p4dgxax6p7rlgj4q73k73rslcnz4wdcv8q2flg1s8ygwcm58ld5"; }) + (fetchNuGet { pname = "runtime.unix.Microsoft.Win32.Primitives"; version = "4.3.0"; sha256 = "0y61k9zbxhdi0glg154v30kkq7f8646nif8lnnxbvkjpakggd5id"; }) + (fetchNuGet { pname = "runtime.unix.System.Console"; version = "4.3.0"; sha256 = "1pfpkvc6x2if8zbdzg9rnc5fx51yllprl8zkm5npni2k50lisy80"; }) + (fetchNuGet { pname = "runtime.unix.System.Diagnostics.Debug"; version = "4.3.0"; sha256 = "1lps7fbnw34bnh3lm31gs5c0g0dh7548wfmb8zz62v0zqz71msj5"; }) + (fetchNuGet { pname = "runtime.unix.System.IO.FileSystem"; version = "4.3.0"; sha256 = "14nbkhvs7sji5r1saj2x8daz82rnf9kx28d3v2qss34qbr32dzix"; }) + (fetchNuGet { pname = "runtime.unix.System.Net.Primitives"; version = "4.3.0"; sha256 = "0bdnglg59pzx9394sy4ic66kmxhqp8q8bvmykdxcbs5mm0ipwwm4"; }) + (fetchNuGet { pname = "runtime.unix.System.Net.Sockets"; version = "4.3.0"; sha256 = "03npdxzy8gfv035bv1b9rz7c7hv0rxl5904wjz51if491mw0xy12"; }) + (fetchNuGet { pname = "runtime.unix.System.Private.Uri"; version = "4.3.0"; sha256 = "1jx02q6kiwlvfksq1q9qr17fj78y5v6mwsszav4qcz9z25d5g6vk"; }) + (fetchNuGet { pname = "runtime.unix.System.Runtime.Extensions"; version = "4.3.0"; sha256 = "0pnxxmm8whx38dp6yvwgmh22smknxmqs5n513fc7m4wxvs1bvi4p"; }) (fetchNuGet { pname = "StyleCop.Analyzers"; version = "1.1.118"; sha256 = "0hj4ax64cay2lvrh9693m0g4pmis0fi5wpm12xwzvc7lkizvac0a"; }) (fetchNuGet { pname = "System.AppContext"; version = "4.1.0"; sha256 = "0fv3cma1jp4vgj7a8hqc9n7hr1f1kjp541s6z0q1r6nazb4iz9mz"; }) (fetchNuGet { pname = "System.Buffers"; version = "4.0.0"; sha256 = "13s659bcmg9nwb6z78971z1lr6bmh2wghxi1ayqyzl4jijd351gr"; }) + (fetchNuGet { pname = "System.Buffers"; version = "4.3.0"; sha256 = "0fgns20ispwrfqll4q1zc1waqcmylb3zc50ys9x8zlwxh9pmd9jy"; }) (fetchNuGet { pname = "System.Collections"; version = "4.0.11"; sha256 = "1ga40f5lrwldiyw6vy67d0sg7jd7ww6kgwbksm19wrvq9hr0bsm6"; }) (fetchNuGet { pname = "System.Collections"; version = "4.3.0"; sha256 = "19r4y64dqyrq6k4706dnyhhw7fs24kpp3awak7whzss39dakpxk9"; }) (fetchNuGet { pname = "System.Collections.Concurrent"; version = "4.0.12"; sha256 = "07y08kvrzpak873pmyxs129g1ch8l27zmg51pcyj2jvq03n0r0fc"; }) @@ -55,6 +95,7 @@ (fetchNuGet { pname = "System.Diagnostics.Tools"; version = "4.0.1"; sha256 = "19cknvg07yhakcvpxg3cxa0bwadplin6kyxd8mpjjpwnp56nl85x"; }) (fetchNuGet { pname = "System.Diagnostics.TraceSource"; version = "4.0.0"; sha256 = "1mc7r72xznczzf6mz62dm8xhdi14if1h8qgx353xvhz89qyxsa3h"; }) (fetchNuGet { pname = "System.Diagnostics.Tracing"; version = "4.1.0"; sha256 = "1d2r76v1x610x61ahfpigda89gd13qydz6vbwzhpqlyvq8jj6394"; }) + (fetchNuGet { pname = "System.Diagnostics.Tracing"; version = "4.3.0"; sha256 = "1m3bx6c2s958qligl67q7grkwfz3w53hpy7nc97mh6f7j5k168c4"; }) (fetchNuGet { pname = "System.Drawing.Common"; version = "6.0.0"; sha256 = "02n8rzm58dac2np8b3xw8ychbvylja4nh6938l5k2fhyn40imlgz"; }) (fetchNuGet { pname = "System.Dynamic.Runtime"; version = "4.0.11"; sha256 = "1pla2dx8gkidf7xkciig6nifdsb494axjvzvann8g2lp3dbqasm9"; }) (fetchNuGet { pname = "System.Globalization"; version = "4.0.11"; sha256 = "070c5jbas2v7smm660zaf1gh0489xanjqymkvafcs4f8cdrs1d5d"; }) @@ -75,10 +116,12 @@ (fetchNuGet { pname = "System.Linq.Async"; version = "6.0.1"; sha256 = "10ira8hmv0i54yp9ggrrdm1c06j538sijfjpn1kmnh9j2xk5yzmq"; }) (fetchNuGet { pname = "System.Linq.Expressions"; version = "4.1.0"; sha256 = "1gpdxl6ip06cnab7n3zlcg6mqp7kknf73s8wjinzi4p0apw82fpg"; }) (fetchNuGet { pname = "System.Net.Http"; version = "4.1.0"; sha256 = "1i5rqij1icg05j8rrkw4gd4pgia1978mqhjzhsjg69lvwcdfg8yb"; }) + (fetchNuGet { pname = "System.Net.NameResolution"; version = "4.3.0"; sha256 = "15r75pwc0rm3vvwsn8rvm2krf929mjfwliv0mpicjnii24470rkq"; }) (fetchNuGet { pname = "System.Net.Primitives"; version = "4.0.11"; sha256 = "10xzzaynkzkakp7jai1ik3r805zrqjxiz7vcagchyxs2v26a516r"; }) (fetchNuGet { pname = "System.Net.Sockets"; version = "4.1.0"; sha256 = "1385fvh8h29da5hh58jm1v78fzi9fi5vj93vhlm2kvqpfahvpqls"; }) (fetchNuGet { pname = "System.ObjectModel"; version = "4.0.12"; sha256 = "1sybkfi60a4588xn34nd9a58png36i0xr4y4v4kqpg8wlvy5krrj"; }) (fetchNuGet { pname = "System.Private.DataContractSerialization"; version = "4.1.1"; sha256 = "1xk9wvgzipssp1393nsg4n16zbr5481k03nkdlj954hzq5jkx89r"; }) + (fetchNuGet { pname = "System.Private.Uri"; version = "4.3.0"; sha256 = "04r1lkdnsznin0fj4ya1zikxiqr0h6r6a1ww2dsm60gqhdrf0mvx"; }) (fetchNuGet { pname = "System.Reactive"; version = "4.4.1"; sha256 = "0gx8jh3hny2y5kijz5k9pxiqw481d013787c04zlhps21ygklw4a"; }) (fetchNuGet { pname = "System.Reflection"; version = "4.1.0"; sha256 = "1js89429pfw79mxvbzp8p3q93il6rdff332hddhzi5wqglc4gml9"; }) (fetchNuGet { pname = "System.Reflection"; version = "4.3.0"; sha256 = "0xl55k0mw8cd8ra6dxzh974nxif58s3k1rjv1vbd7gjbjr39j11m"; }) @@ -110,6 +153,7 @@ (fetchNuGet { pname = "System.Runtime.Serialization.Json"; version = "4.0.2"; sha256 = "08ypbzs0sb302ga04ds5b2wxa2gg0q50zpa0nvc87ipjhs0v66dn"; }) (fetchNuGet { pname = "System.Runtime.Serialization.Primitives"; version = "4.1.1"; sha256 = "042rfjixknlr6r10vx2pgf56yming8lkjikamg3g4v29ikk78h7k"; }) (fetchNuGet { pname = "System.Security.AccessControl"; version = "6.0.0"; sha256 = "0a678bzj8yxxiffyzy60z2w1nczzpi8v97igr4ip3byd2q89dv58"; }) + (fetchNuGet { pname = "System.Security.Claims"; version = "4.3.0"; sha256 = "0jvfn7j22l3mm28qjy3rcw287y9h65ha4m940waaxah07jnbzrhn"; }) (fetchNuGet { pname = "System.Security.Cryptography.Algorithms"; version = "4.2.0"; sha256 = "148s9g5dgm33ri7dnh19s4lgnlxbpwvrw2jnzllq2kijj4i4vs85"; }) (fetchNuGet { pname = "System.Security.Cryptography.Cng"; version = "4.2.0"; sha256 = "118jijz446kix20blxip0f0q8mhsh9bz118mwc2ch1p6g7facpzc"; }) (fetchNuGet { pname = "System.Security.Cryptography.Csp"; version = "4.0.0"; sha256 = "1cwv8lqj8r15q81d2pz2jwzzbaji0l28xfrpw29kdpsaypm92z2q"; }) @@ -119,6 +163,8 @@ (fetchNuGet { pname = "System.Security.Cryptography.ProtectedData"; version = "6.0.0"; sha256 = "05kd3a8w7658hjxq9vvszxip30a479fjmfq4bq1r95nrsvs4hbss"; }) (fetchNuGet { pname = "System.Security.Cryptography.X509Certificates"; version = "4.1.0"; sha256 = "0clg1bv55mfv5dq00m19cp634zx6inm31kf8ppbq1jgyjf2185dh"; }) (fetchNuGet { pname = "System.Security.Permissions"; version = "6.0.0"; sha256 = "0jsl4xdrkqi11iwmisi1r2f2qn5pbvl79mzq877gndw6ans2zhzw"; }) + (fetchNuGet { pname = "System.Security.Principal"; version = "4.3.0"; sha256 = "12cm2zws06z4lfc4dn31iqv7072zyi4m910d4r6wm8yx85arsfxf"; }) + (fetchNuGet { pname = "System.Security.Principal.Windows"; version = "4.3.0"; sha256 = "00a0a7c40i3v4cb20s2cmh9csb5jv2l0frvnlzyfxh848xalpdwr"; }) (fetchNuGet { pname = "System.Text.Encoding"; version = "4.0.11"; sha256 = "1dyqv0hijg265dwxg6l7aiv74102d6xjiwplh2ar1ly6xfaa4iiw"; }) (fetchNuGet { pname = "System.Text.Encoding"; version = "4.3.0"; sha256 = "1f04lkir4iladpp51sdgmis9dj4y8v08cka0mbmsy0frc9a4gjqr"; }) (fetchNuGet { pname = "System.Text.Encoding.Extensions"; version = "4.0.11"; sha256 = "08nsfrpiwsg9x5ml4xyl3zyvjfdi4mvbqf93kjdh11j4fwkznizs"; }) diff --git a/third_party/nixpkgs/pkgs/development/dotnet-modules/python-language-server/default.nix b/third_party/nixpkgs/pkgs/development/dotnet-modules/python-language-server/default.nix index a197f158bb..3044e884e3 100644 --- a/third_party/nixpkgs/pkgs/development/dotnet-modules/python-language-server/default.nix +++ b/third_party/nixpkgs/pkgs/development/dotnet-modules/python-language-server/default.nix @@ -26,8 +26,6 @@ buildDotnetModule rec { dotnet-sdk = dotnetCorePackages.sdk_3_1; dotnet-runtime = dotnetCorePackages.runtime_3_1; - dotnetRestoreFlags = [ "--runtime ${dotnet-sdk.systemToDotnetRid stdenvNoCC.targetPlatform.system}" ]; - nativeBuildInputs = [ autoPatchelfHook ]; buildInputs = [ stdenv.cc.cc.lib ]; runtimeDeps = [ openssl icu ]; diff --git a/third_party/nixpkgs/pkgs/development/embedded/platformio/core.nix b/third_party/nixpkgs/pkgs/development/embedded/platformio/core.nix index afd60ec2ae..a9b6e156b8 100644 --- a/third_party/nixpkgs/pkgs/development/embedded/platformio/core.nix +++ b/third_party/nixpkgs/pkgs/development/embedded/platformio/core.nix @@ -21,7 +21,7 @@ with python3.pkgs; buildPythonApplication rec { --subst-var-by SPDX_LICENSE_LIST_DATA '${spdx-license-list-data.json}' substituteInPlace setup.py \ - --replace 'uvicorn==%s" % ("0.16.0" if PY36 else "0.19.*")' 'uvicorn>=0.16,<=0.19"' \ + --replace 'uvicorn==%s" % ("0.16.0" if PY36 else "0.19.*")' 'uvicorn>=0.16"' \ --replace 'starlette==%s" % ("0.19.1" if PY36 else "0.21.*")' 'starlette>=0.19.1,<=0.21"' \ --replace 'tabulate==%s" % ("0.8.10" if PY36 else "0.9.*")' 'tabulate>=0.8.10,<=0.9"' \ --replace 'wsproto==' 'wsproto>=' diff --git a/third_party/nixpkgs/pkgs/development/guile-modules/guile-fibers/default.nix b/third_party/nixpkgs/pkgs/development/guile-modules/guile-fibers/default.nix index 606162ab94..d412c181e9 100644 --- a/third_party/nixpkgs/pkgs/development/guile-modules/guile-fibers/default.nix +++ b/third_party/nixpkgs/pkgs/development/guile-modules/guile-fibers/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "guile-fibers"; - version = "1.1.1"; + version = "1.2.0"; src = fetchFromGitHub { owner = "wingo"; repo = "fibers"; rev = "v${version}"; - hash = "sha256-jEY6i+uTqDkXZKdpK+/GRLlK7aJxkRneVZQJIE4bhlI="; + hash = "sha256-3q1mJImce96Dn37UbofaNHj54Uzs1p4XyMNzpu3PdXQ="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/HACKING.md b/third_party/nixpkgs/pkgs/development/haskell-modules/HACKING.md index 752f1ba494..12afee84b1 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/HACKING.md +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/HACKING.md @@ -71,7 +71,7 @@ $ ./maintainers/scripts/haskell/hydra-report.hs get-report $ ./maintainers/scripts/haskell/hydra-report.hs ping-maintainers ``` -The `hyda-report.hs ping-maintainers` command generates a Markdown document +The `hydra-report.hs ping-maintainers` command generates a Markdown document that you can paste in a GitHub comment on the PR opened above. This comment describes which Haskell packages are now failing to build. It also pings the maintainers so that they know to fix up their packages. diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/cabal2nix-unstable.nix b/third_party/nixpkgs/pkgs/development/haskell-modules/cabal2nix-unstable.nix index d503463858..cf43351158 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/cabal2nix-unstable.nix +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/cabal2nix-unstable.nix @@ -8,10 +8,10 @@ }: mkDerivation { pname = "cabal2nix"; - version = "unstable-2022-10-22"; + version = "unstable-2022-12-08"; src = fetchzip { - url = "https://github.com/NixOS/cabal2nix/archive/bf7cc8f202e332953f7fbfc1d90490e4c197d287.tar.gz"; - sha256 = "0fmpfl2nl215aids9yxdmdik77w7cppk900rnx23m07rmwg4xa4f"; + url = "https://github.com/NixOS/cabal2nix/archive/021a48f4b4942462154b06fd81429a248638f87f.tar.gz"; + sha256 = "1is1q5mqi86vzy3ni2959hr95gs9hwd5wiz92hanfli3infg00xc"; }; postUnpack = "sourceRoot+=/cabal2nix; echo source root reset to $sourceRoot"; isLibrary = true; diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-common.nix b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-common.nix index 55bf787c2f..5c94706239 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-common.nix +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-common.nix @@ -12,7 +12,7 @@ { pkgs, haskellLib }: let - inherit (pkgs) fetchpatch lib; + inherit (pkgs) fetchpatch fetchpatch2 lib; inherit (lib) throwIfNot versionOlder; in @@ -60,37 +60,15 @@ self: super: { ghc-datasize = disableLibraryProfiling super.ghc-datasize; ghc-vis = disableLibraryProfiling super.ghc-vis; - # Patch providing GHC9 compat, can be removed once the following gets released: - # > https://github.com/adinapoli/snaplet-purescript/pull/25 - snaplet-purescript = appendPatch (fetchpatch { - url = "https://github.com/adinapoli/snaplet-purescript/commit/4c7457d9357558524d4d19ff7c7f13f85b442539.patch"; - sha256 = "sha256-wpNvCO6txEvSv8LjQaaEIbBBPJnFaMpFx5ER8BT9lXo="; - }) super.snaplet-purescript; - # The latest release on hackage has an upper bound on containers which # breaks the build, though it works with the version of containers present # and the upper bound doesn't exist in code anymore: # > https://github.com/roelvandijk/numerals numerals = doJailbreak (dontCheck super.numerals); - # Waiting on a release with the following for bumping base and - # attoparsec upper bounds: - # > https://github.com/snapframework/io-streams-haproxy/pull/21 - # > https://github.com/snapframework/io-streams-haproxy/pull/24 - io-streams-haproxy = doJailbreak super.io-streams-haproxy; - - # xmlhtml's test suite depends on hspec with an invalid boundry range for - # the version we currently track, even though the upper bound is relaxed on - # github it doesn't have a release yet; though there's an MR preparing the - # next release: - # > https://github.com/snapframework/xmlhtml/pull/40 - # Once that's out we can re-enable version checks. - xmlhtml = doJailbreak super.xmlhtml; - - # map-syntax has a restrictive upper bound on base, can be removed once - # > https://github.com/mightybyte/map-syntax/pull/14 - # is released. - map-syntax = doJailbreak super.map-syntax; + # Too stricut upper bound on time + # https://github.com/acw/rate-limit/issues/9 + rate-limit = doJailbreak super.rate-limit; # This test keeps being aborted because it runs too quietly for too long Lazy-Pbkdf2 = if pkgs.stdenv.isi686 then dontCheck super.Lazy-Pbkdf2 else super.Lazy-Pbkdf2; @@ -106,7 +84,7 @@ self: super: { name = "git-annex-${super.git-annex.version}-src"; url = "git://git-annex.branchable.com/"; rev = "refs/tags/" + super.git-annex.version; - sha256 = "14391vj0awvkpsd32kanmc85yic5mg4pxmjhiv7wjxy7ga13wfqw"; + sha256 = "052ld021yvjbnx1sbj1ryflsyn0v1y1ygx1zv0ql6fk3cysw5lxf"; # delete android and Android directories which cause issues on # darwin (case insensitive directory). Since we don't need them # during the build process, we can delete it to prevent a hash @@ -132,32 +110,19 @@ self: super: { postPatch = "sed -i s/home/tmp/ test/Spec.hs"; }) super.shell-conduit; - # https://github.com/cachix/cachix/pull/451 - cachix = appendPatch ./patches/cachix.patch super.cachix; + cachix = self.generateOptparseApplicativeCompletions [ "cachix" ] super.cachix; # https://github.com/froozen/kademlia/issues/2 kademlia = dontCheck super.kademlia; - # https://github.com/haskell-game/dear-imgui.hs/issues/116 - dear-imgui = doJailbreak super.dear-imgui; - # Tests require older versions of tasty. hzk = dontCheck super.hzk; resolv = doJailbreak super.resolv; - tdigest = doJailbreak super.tdigest; - text-short = doJailbreak super.text-short; - tree-diff = doJailbreak super.tree-diff; - zinza = doJailbreak super.zinza; - - # Too strict upper bound on base, no upstream issue tracker nor repository - mmsyn5 = doJailbreak super.mmsyn5; # Tests require a Kafka broker running locally haskakafka = dontCheck super.haskakafka; - bindings-levmar = overrideCabal (drv: { - extraLibraries = [ pkgs.blas ]; - }) super.bindings-levmar; + bindings-levmar = addExtraLibrary pkgs.blas super.bindings-levmar; # Requires wrapQtAppsHook qtah-cpp-qt5 = overrideCabal (drv: { @@ -170,20 +135,9 @@ self: super: { hoodle-core = dontHaddock super.hoodle-core; hsc3-db = dontHaddock super.hsc3-db; - # Pick patch from master for GHC 9.0 support - flat = assert versionOlder super.flat.version "0.5"; appendPatches [ - (fetchpatch { - name = "flat-ghc-9.0.patch"; - url = "https://github.com/Quid2/flat/commit/d32c2c0c0c3c38c41177684ade9febe92d279b06.patch"; - sha256 = "0ay0c53jpjmnnh7ylfpzpxqkhs1vq9jdwm9f84d40r88ki8hls8g"; - }) - ] super.flat; - - # Too strict bounds on base, optparse-applicative: https://github.com/edsko/friendly/issues/5 - friendly = doJailbreak super.friendly; - - # Too strict bound on hspec: https://github.com/ivan-m/graphviz/issues/55 - graphviz = doJailbreak super.graphviz; + # Fix build with time >= 1.10 while retaining compat with time < 1.9 + mbox = appendPatch ./patches/mbox-time-1.10.patch + (overrideCabal { editedCabalFile = null; revision = null; } super.mbox); # https://github.com/techtangents/ablist/issues/1 ABList = dontCheck super.ABList; @@ -235,7 +189,6 @@ self: super: { pocket-dns = dontCheck super.pocket-dns; postgresql-simple = dontCheck super.postgresql-simple; squeal-postgresql = dontCheck super.squeal-postgresql; - postgrest = dontCheck super.postgrest; postgrest-ws = dontCheck super.postgrest-ws; snowball = dontCheck super.snowball; sophia = dontCheck super.sophia; @@ -257,16 +210,15 @@ self: super: { })); # 2020-06-05: HACK: does not pass own build suite - `dontCheck` - # 2022-06-17: Use hnix-store 0.5 until hnix 0.17 - hnix = self.generateOptparseApplicativeCompletions [ "hnix" ] (dontCheck ( - super.hnix.overrideScope (hself: hsuper: { - hnix-store-core = hself.hnix-store-core_0_5_0_0; - hnix-store-remote = hself.hnix-store-remote_0_5_0_0; - }) - )); - # Too strict bounds on algebraic-graphs + # 2022-11-24: jailbreak as it has too strict bounds on a bunch of things + hnix = self.generateOptparseApplicativeCompletions [ "hnix" ] (dontCheck (doJailbreak super.hnix)); + # Too strict bounds on algebraic-graphs and bytestring # https://github.com/haskell-nix/hnix-store/issues/180 - hnix-store-core_0_5_0_0 = doJailbreak super.hnix-store-core_0_5_0_0; + hnix-store-core = doJailbreak super.hnix-store-core; + + # Too strict upper bound on bytestring + # https://github.com/wangbj/hashing/issues/3 + hashing = doJailbreak super.hashing; # Fails for non-obvious reasons while attempting to use doctest. focuslist = dontCheck super.focuslist; @@ -289,7 +241,6 @@ self: super: { aws-kinesis = dontCheck super.aws-kinesis; # needs aws credentials for testing binary-protocol = dontCheck super.binary-protocol; # http://hydra.cryp.to/build/499749/log/raw binary-search = dontCheck super.binary-search; - bits = dontCheck super.bits; # http://hydra.cryp.to/build/500239/log/raw bloodhound = dontCheck super.bloodhound; # https://github.com/plow-technologies/quickcheck-arbitrary-template/issues/10 buildwrapper = dontCheck super.buildwrapper; burst-detection = dontCheck super.burst-detection; # http://hydra.cryp.to/build/496948/log/raw @@ -319,11 +270,9 @@ self: super: { fb = dontCheck super.fb; # needs credentials for Facebook fptest = dontCheck super.fptest; # http://hydra.cryp.to/build/499124/log/raw friday-juicypixels = dontCheck super.friday-juicypixels; #tarball missing test/rgba8.png - ghc-events = dontCheck super.ghc-events; # http://hydra.cryp.to/build/498226/log/raw ghc-events-parallel = dontCheck super.ghc-events-parallel; # http://hydra.cryp.to/build/496828/log/raw ghc-imported-from = dontCheck super.ghc-imported-from; ghc-parmake = dontCheck super.ghc-parmake; - ghcid = dontCheck super.ghcid; git-vogue = dontCheck super.git-vogue; github-rest = dontCheck super.github-rest; # test suite needs the network gitlib-cmdline = dontCheck super.gitlib-cmdline; @@ -442,16 +391,9 @@ self: super: { # https://github.com/bos/snappy/issues/1 snappy = dontCheck super.snappy; - # https://ghc.haskell.org/trac/ghc/ticket/9625 - vty = dontCheck super.vty; - # https://github.com/vincenthz/hs-crypto-pubkey/issues/20 crypto-pubkey = dontCheck super.crypto-pubkey; - # Test suite works with aeson 2.0 only starting with 0.14.1 - vinyl = assert versionOlder super.vinyl.version "0.14.1"; - dontCheck super.vinyl; - # https://github.com/Philonous/xml-picklers/issues/5 xml-picklers = dontCheck super.xml-picklers; @@ -459,14 +401,11 @@ self: super: { stm-delay = dontCheck super.stm-delay; # https://github.com/pixbi/duplo/issues/25 - duplo = dontCheck super.duplo; + duplo = doJailbreak super.duplo; # https://github.com/evanrinehart/mikmod/issues/1 mikmod = addExtraLibrary pkgs.libmikmod super.mikmod; - # https://github.com/basvandijk/threads/issues/10 - threads = dontCheck super.threads; - # Missing module. rematch = dontCheck super.rematch; # https://github.com/tcrayford/rematch/issues/5 rematch-text = dontCheck super.rematch-text; # https://github.com/tcrayford/rematch/issues/6 @@ -500,23 +439,8 @@ self: super: { # https://github.com/junjihashimoto/test-sandbox-compose/issues/2 test-sandbox-compose = dontCheck super.test-sandbox-compose; - # Waiting on language-python 0.5.8 https://github.com/bjpop/language-python/issues/60 - xcffib = dontCheck super.xcffib; - - # https://github.com/afcowie/locators/issues/1 - locators = dontCheck super.locators; - # Test suite won't compile against tasty-hunit 0.10.x. - binary-parser = dontCheck super.binary-parser; binary-parsers = dontCheck super.binary-parsers; - bytestring-strict-builder = dontCheck super.bytestring-strict-builder; - bytestring-tree-builder = dontCheck super.bytestring-tree-builder; - - # https://github.com/byteverse/bytebuild/issues/19 - bytebuild = dontCheck super.bytebuild; - - # https://github.com/andrewthad/haskell-ip/issues/67 - ip = dontCheck super.ip; # https://github.com/ndmitchell/shake/issues/804 shake = dontCheck super.shake; @@ -537,12 +461,10 @@ self: super: { # else dontCheck super.doctest-discover); doctest-discover = dontCheck super.doctest-discover; - tasty-discover = overrideCabal (drv: { - # Depends on itself for testing - preBuild = '' - export PATH="$PWD/dist/build/tasty-discover:$PATH" - '' + (drv.preBuild or ""); - }) super.tasty-discover; + # Test suite is missing an import from hspec + # https://github.com/haskell-works/tasty-discover/issues/9 + # https://github.com/commercialhaskell/stackage/issues/6584#issuecomment-1326522815 + tasty-discover = assert super.tasty-discover.version == "4.2.2"; dontCheck super.tasty-discover; # Known issue with nondeterministic test suite failure # https://github.com/nomeata/tasty-expected-failure/issues/21 @@ -560,6 +482,12 @@ self: super: { # https://github.com/kkardzis/curlhs/issues/6 curlhs = dontCheck super.curlhs; + # Too strict upper bounds on bytestring & time + # https://github.com/barrucadu/irc-conduit/issues/35 + irc-conduit = doJailbreak super.irc-conduit; + # https://github.com/barrucadu/irc-client/issues/77 + irc-client = doJailbreak super.irc-client; + # https://github.com/hvr/token-bucket/issues/3 token-bucket = dontCheck super.token-bucket; @@ -569,12 +497,6 @@ self: super: { # FPCO's fork of Cabal won't succeed its test suite. Cabal-ide-backend = dontCheck super.Cabal-ide-backend; - # QuickCheck version, also set in cabal2nix - websockets = dontCheck super.websockets; - - # Avoid spurious test suite failures. - fft = dontCheck super.fft; - # This package can't be built on non-Windows systems. Win32 = overrideCabal (drv: { broken = !pkgs.stdenv.isCygwin; }) super.Win32; inline-c-win32 = dontDistribute super.inline-c-win32; @@ -673,17 +595,27 @@ self: super: { doCheck = false; # https://github.com/chrisdone/hindent/issues/299 }) super.hindent); - # https://github.com/bos/configurator/issues/22 - configurator = dontCheck super.configurator; - # https://github.com/basvandijk/concurrent-extra/issues/12 concurrent-extra = dontCheck super.concurrent-extra; - # https://github.com/bos/bloomfilter/issues/7 - bloomfilter = appendPatch ./patches/bloomfilter-fix-on-32bit.patch super.bloomfilter; - - # https://github.com/ashutoshrishi/hunspell-hs/pull/3 - hunspell-hs = addPkgconfigDepend pkgs.hunspell (dontCheck (appendPatch ./patches/hunspell.patch super.hunspell-hs)); + bloomfilter = appendPatches [ + # https://github.com/bos/bloomfilter/issues/7 + ./patches/bloomfilter-fix-on-32bit.patch + # Fix build with GHC >= 9.2 by using stock unsafeShift* functions + # https://github.com/bos/bloomfilter/pull/20 + (pkgs.fetchpatch { + name = "bloomfilter-ghc-9.2-shift.patch"; + url = "https://github.com/bos/bloomfilter/pull/20/commits/fb79b39c44404fd791a3bed973e9d844fb084f1e.patch"; + sha256 = "0clmr5iar4mhp8nbgh1c1rh4fl7dy0g2kbqqh0af8aqmhjpqzrq3"; + }) + ] (overrideCabal (drv: { + # Make sure GHC 9.2 patch applies correctly + revision = null; + editedCabalFile = null; + prePatch = drv.prePatch or "" + '' + "${pkgs.buildPackages.dos2unix}/bin/dos2unix" *.cabal + ''; + }) super.bloomfilter); # https://github.com/pxqr/base32-bytestring/issues/4 base32-bytestring = dontCheck super.base32-bytestring; @@ -746,9 +678,6 @@ self: super: { # note: the library is unmaintained, no upstream issue dataenc = doJailbreak super.dataenc; - # https://github.com/divipp/ActiveHs-misc/issues/10 - data-pprint = doJailbreak super.data-pprint; - # horribly outdated (X11 interface changed a lot) sindre = markBroken super.sindre; @@ -758,9 +687,6 @@ self: super: { # https://github.com/mulby/diff-parse/issues/9 diff-parse = doJailbreak super.diff-parse; - # https://github.com/josefs/STMonadTrans/issues/4 - STMonadTrans = dontCheck super.STMonadTrans; - # No upstream issue tracker hspec-expectations-pretty-diff = dontCheck super.hspec-expectations-pretty-diff; @@ -768,27 +694,17 @@ self: super: { # QuickCheck to versions ">=2.3 && <2.9". system-filepath = dontCheck super.system-filepath; - # https://github.com/hvr/uuid/issues/28 - uuid-types = doJailbreak super.uuid-types; - uuid = doJailbreak super.uuid; - # The tests spuriously fail libmpd = dontCheck super.libmpd; - # https://github.com/diagrams/diagrams-braille/issues/1 - diagrams-braille = doJailbreak super.diagrams-braille; - # https://github.com/xu-hao/namespace/issues/1 namespace = doJailbreak super.namespace; - # https://github.com/diagrams/diagrams-solve/issues/4 - diagrams-solve = dontCheck super.diagrams-solve; - # https://github.com/danidiaz/streaming-eversion/issues/1 streaming-eversion = dontCheck super.streaming-eversion; # https://github.com/danidiaz/tailfile-hinotify/issues/2 - tailfile-hinotify = dontCheck super.tailfile-hinotify; + tailfile-hinotify = doJailbreak (dontCheck super.tailfile-hinotify); # Test suite fails: https://github.com/lymar/hastache/issues/46. # Don't install internal mkReadme tool. @@ -800,16 +716,10 @@ self: super: { # Has a dependency on outdated versions of directory. cautious-file = doJailbreak (dontCheck super.cautious-file); - # test suite does not compile with recent versions of QuickCheck - integer-logarithms = dontCheck (super.integer-logarithms); - # missing dependencies: blaze-html >=0.5 && <0.9, blaze-markup >=0.5 && <0.8 digestive-functors-blaze = doJailbreak super.digestive-functors-blaze; digestive-functors = doJailbreak super.digestive-functors; - # https://github.com/takano-akio/filelock/issues/5 - filelock = dontCheck super.filelock; - # Wrap the generated binaries to include their run-time dependencies in # $PATH. Also, cryptol needs a version of sbl that's newer than what we have # in LTS-13.x. @@ -834,9 +744,9 @@ self: super: { testHaskellDepends = drv.testHaskellDepends or [] ++ [ self.hspec-meta_2_10_5 ]; testToolDepends = drv.testToolDepends or [] ++ [ pkgs.git ]; }) (super.sensei.override { - hspec = self.hspec_2_10_6; + hspec = self.hspec_2_10_8; hspec-wai = super.hspec-wai.override { - hspec = self.hspec_2_10_6; + hspec = self.hspec_2_10_8; }; }); @@ -861,52 +771,15 @@ self: super: { # Needs QuickCheck <2.10, which we don't have. edit-distance = doJailbreak super.edit-distance; - blaze-html = doJailbreak super.blaze-html; int-cast = doJailbreak super.int-cast; # Needs QuickCheck <2.10, HUnit <1.6 and base <4.10 pointfree = doJailbreak super.pointfree; - # The project is stale - # - # Archiving request: https://github.com/haskell-hvr/cryptohash-sha512/issues/6 - # - # doJailbreak since base <4.12 && bytestring <0.11 - # Request to support: - # https://github.com/haskell-hvr/cryptohash-sha512/issues/4 - # PRs to support base <4.12: - # https://github.com/haskell-hvr/cryptohash-sha512/pull/3 - # https://github.com/haskell-hvr/cryptohash-sha512/pull/5 - # - # dontCheck since test suite does not support new `base16-bytestring` >= 1 format - # https://github.com/haskell-hvr/cryptohash-sha512/pull/5#issuecomment-752796913 - cryptohash-sha512 = dontCheck (doJailbreak super.cryptohash-sha512); - - # https://github.com/haskell-hvr/cryptohash-sha256/issues/11 - # Jailbreak is necessary to break out of tasty < 1.x dependency. - # hackage2nix generates this as a broken package due to the (fake) dependency - # missing from hackage, so we need to fix the meta attribute set. - cryptohash-sha256 = overrideCabal (drv: { - jailbreak = true; - broken = false; - hydraPlatforms = lib.platforms.all; - }) super.cryptohash-sha256; - - # The test suite has all kinds of out-dated dependencies, so it feels easier - # to just disable it. - cryptohash-sha1 = dontCheck super.cryptohash-sha1; - cryptohash-md5 = dontCheck super.cryptohash-md5; - # Needs tasty-quickcheck ==0.8.*, which we don't have. gitHUD = dontCheck super.gitHUD; githud = dontCheck super.githud; - # https://github.com/aisamanra/config-ini/issues/12 - config-ini = dontCheck super.config-ini; - - # doctest >=0.9 && <0.12 - path = dontCheck super.path; - # Test suite fails due to trying to create directories path-io = dontCheck super.path-io; @@ -920,14 +793,7 @@ self: super: { # https://github.com/alphaHeavy/protobuf/issues/34 protobuf = dontCheck super.protobuf; - # Is this package still maintained? https://github.com/haskell/text-icu/issues/30 - text-icu = overrideCabal (drv: { - doCheck = false; # https://github.com/bos/text-icu/issues/32 - configureFlags = ["--ghc-option=-DU_DEFINE_FALSE_AND_TRUE=1"]; # https://github.com/haskell/text-icu/issues/49 - }) super.text-icu; - # jailbreak tasty < 1.2 until servant-docs > 0.11.3 is on hackage. - servant-docs = doJailbreak super.servant-docs; snap-templates = doJailbreak super.snap-templates; # https://github.com/snapframework/snap-templates/issues/22 # Copy hledger man pages from data directory into the proper place. This code @@ -988,7 +854,8 @@ self: super: { # Compiles some C or C++ source which requires these headers VulkanMemoryAllocator = addExtraLibrary pkgs.vulkan-headers super.VulkanMemoryAllocator; - vulkan-utils = addExtraLibrary pkgs.vulkan-headers super.vulkan-utils; + # dontCheck can be removed on the next package set bump + vulkan-utils = dontCheck (addExtraLibrary pkgs.vulkan-headers super.vulkan-utils); # https://github.com/dmwit/encoding/pull/3 encoding = doJailbreak (appendPatch ./patches/encoding-Cabal-2.0.patch super.encoding); @@ -996,13 +863,6 @@ self: super: { # Work around overspecified constraint on github ==0.18. github-backup = doJailbreak super.github-backup; - # https://github.com/andrewthad/chronos/issues/62 - # doctests are failing on newer GHC versions - chronos = dontCheck super.chronos; - - # Test suite depends on cabal-install - doctest = dontCheck super.doctest; - # dontCheck: https://github.com/haskell-servant/servant-auth/issues/113 # doJailbreak: waiting on revision 1 to hit hackage servant-auth-client = doJailbreak (dontCheck super.servant-auth-client); @@ -1014,33 +874,32 @@ self: super: { # https://github.com/commercialhaskell/stackage/issues/5795 # This issue can be mitigated with 'dontCheck' which skips the tests and their compilation. dhall-json = self.generateOptparseApplicativeCompletions ["dhall-to-json" "dhall-to-yaml"] (dontCheck super.dhall-json); - dhall-nix = self.generateOptparseApplicativeCompletions [ "dhall-to-nix" ] super.dhall-nix; + dhall-nix = self.generateOptparseApplicativeCompletions [ "dhall-to-nix" ] + (overrideCabal (drv: { + patches = [ + # Compatibility with hnix 0.16, waiting for release + # https://github.com/dhall-lang/dhall-haskell/pull/2474 + (pkgs.fetchpatch { + name = "dhall-nix-hnix-0.16.patch"; + url = "https://github.com/dhall-lang/dhall-haskell/commit/49b9b3e3ce1718a89773c2b1bfa3c2af1a6e8752.patch"; + sha256 = "12sh5md81nlhyzzkmf7jrll3w1rvg2j48m57hfyvjn8has9c4gw6"; + stripLen = 1; + includes = [ "dhall-nix.cabal" "src/Dhall/Nix.hs" ]; + }) + ] ++ drv.patches or []; + prePatch = drv.prePatch or "" + '' + ${pkgs.buildPackages.dos2unix}/bin/dos2unix *.cabal + ''; + }) super.dhall-nix); dhall-yaml = self.generateOptparseApplicativeCompletions ["dhall-to-yaml-ng" "yaml-to-dhall"] super.dhall-yaml; - dhall-nixpkgs = self.generateOptparseApplicativeCompletions [ "dhall-to-nixpkgs" ] super.dhall-nixpkgs; + dhall-nixpkgs = self.generateOptparseApplicativeCompletions [ "dhall-to-nixpkgs" ] + (overrideCabal (drv: { + # Allow hnix 0.16, needs unreleased bounds change + # https://github.com/dhall-lang/dhall-haskell/pull/2474 + jailbreak = assert drv.version == "1.0.9" && drv.revision == "1"; true; + }) super.dhall-nixpkgs); - # https://github.com/haskell-hvr/netrc/pull/2#issuecomment-469526558 - netrc = doJailbreak super.netrc; - - # https://github.com/haskell-hvr/hgettext/issues/14 - hgettext = doJailbreak super.hgettext; - - stack = - self.generateOptparseApplicativeCompletions [ "stack" ] - # stack has a bunch of constraints in its .cabal file that don't seem to be necessary - (doJailbreak - (super.stack.overrideScope (self: super: { - # Needs Cabal-3.6 - Cabal = self.Cabal_3_6_3_0; - # Official stack ships with hpack-0.35.0. Nixpkgs uses the same - # version of hpack so that users who get stack from Nixpkgs - # generate the same .cabal files as users who download official binaries - # of stack. - # - # dontCheck is used because one of the hpack tests appears to be - # incorrectly(?) failing: - # https://github.com/sol/hpack/issues/528 - hpack = dontCheck self.hpack_0_35_0; - }))); + stack = self.generateOptparseApplicativeCompletions [ "stack" ] super.stack; # Too strict version bound on hashable-time. # Tests require newer package version. @@ -1050,6 +909,14 @@ self: super: { # dontCheck: use of non-standard strptime "%s" which musl doesn't support; only used in test unix-time = if pkgs.stdenv.hostPlatform.isMusl then dontCheck super.unix-time else super.unix-time; + # Workaround for https://github.com/sol/hpack/issues/528 + # The hpack test suite can't deal with the CRLF line endings hackage revisions insert + hpack = overrideCabal (drv: { + postPatch = drv.postPatch or "" + '' + "${lib.getBin pkgs.buildPackages.dos2unix}/bin/dos2unix" *.cabal + ''; + }) super.hpack; + # hslua has tests that appear to break when using musl. # https://github.com/hslua/hslua/issues/106 # Note that hslua is currently version 1.3. However, in the latest version @@ -1080,13 +947,6 @@ self: super: { # Generate shell completion for spago spago = self.generateOptparseApplicativeCompletions [ "spago" ] super.spago; - # 2020-06-05: HACK: Package can not pass test suite, - # Upstream Report: https://github.com/kcsongor/generic-lens/issues/83 - generic-lens = dontCheck super.generic-lens; - - # https://github.com/danfran/cabal-macosx/issues/13 - cabal-macosx = dontCheck super.cabal-macosx; - # https://github.com/DanielG/cabal-helper/pull/123 cabal-helper = doJailbreak super.cabal-helper; @@ -1103,10 +963,6 @@ self: super: { # https://github.com/mgajda/json-autotype/issues/25 json-autotype = dontCheck super.json-autotype; - # Requires dlist <0.9 but it works fine with dlist-1.0 - # https://github.com/haskell-beam/beam/issues/581 - beam-core = doJailbreak super.beam-core; - # Requires pg_ctl command during tests beam-postgres = overrideCabal (drv: { # https://github.com/NixOS/nixpkgs/issues/198495 @@ -1125,6 +981,8 @@ self: super: { # Fix build with attr-2.4.48 (see #53716) xattr = appendPatch ./patches/xattr-fix-build.patch super.xattr; + patch = dontCheck super.patch; + esqueleto = overrideCabal (drv: { @@ -1174,9 +1032,6 @@ self: super: { # https://github.com/erikd/hjsmin/issues/32 hjsmin = dontCheck super.hjsmin; - # upstream issue: https://github.com/vmchale/atspkg/issues/12 - language-ats = dontCheck super.language-ats; - # Remove for hail > 0.2.0.0 hail = overrideCabal (drv: { patches = [ @@ -1198,9 +1053,6 @@ self: super: { # https://github.com/kazu-yamamoto/dns/issues/150 dns = dontCheck super.dns; - # https://github.com/haskell-servant/servant-blaze/issues/17 - servant-blaze = doJailbreak super.servant-blaze; - # https://github.com/haskell-servant/servant-ekg/issues/15 servant-ekg = doJailbreak super.servant-ekg; @@ -1232,9 +1084,6 @@ self: super: { # 2021-10-04: too strict upper bound on Hakyll hakyll-filestore = doJailbreak super.hakyll-filestore; - # 2020-06-22: NOTE: > 0.4.0 => rm Jailbreak: https://github.com/serokell/nixfmt/issues/71 - nixfmt = doJailbreak super.nixfmt; - # The test suite depends on an impure cabal-install installation in # $HOME, which we don't have in our build sandbox. # 2022-08-31: Jailbreak is done to allow aeson 2.0.*: @@ -1251,18 +1100,15 @@ self: super: { ); # 2022-03-12: Pick patches from master for compat with Stackage Nightly + # 2022-12-07: Lift bounds to allow dependencies shipped with LTS-20 + # https://github.com/jgm/gitit/pull/683 gitit = appendPatches [ - (fetchpatch { - name = "gitit-allow-pandoc-2.17.patch"; - url = "https://github.com/jgm/gitit/commit/9eddd1d3bde46bccb23c6d21e15b289f2a9ebe66.patch"; - sha256 = "09ahvwyaqzqaa9gnpbffncs9574d20mfy30zz2ww67cmm8f2a8iv"; - }) (fetchpatch { name = "gitit-fix-build-with-hoauth2-2.3.0.patch"; url = "https://github.com/jgm/gitit/commit/fd534c0155eef1790500c834e612ab22cf9b67b6.patch"; sha256 = "0hmlqkavn8hr0b4y4hxs1yyg0r79ylkzhzwy1dzbb3a2q86ydd2f"; }) - ] super.gitit; + ] (doJailbreak super.gitit); # Test suite requires database persistent-mysql = dontCheck super.persistent-mysql; @@ -1288,26 +1134,6 @@ self: super: { }) super.persistent-postgresql; - # Fix EdisonAPI and EdisonCore for GHC 8.8: - # https://github.com/robdockins/edison/pull/16 - EdisonAPI = appendPatch (fetchpatch { - url = "https://github.com/robdockins/edison/pull/16/commits/8da6c0f7d8666766e2f0693425c347c0adb492dc.patch"; - postFetch = '' - ${pkgs.buildPackages.patchutils}/bin/filterdiff --include='a/edison-api/*' --strip=1 "$out" > "$tmpfile" - mv "$tmpfile" "$out" - ''; - sha256 = "0yi5pz039lcm4pl9xnl6krqxyqq5rgb5b6m09w0sfy06x0n4x213"; - }) super.EdisonAPI; - - EdisonCore = appendPatch (fetchpatch { - url = "https://github.com/robdockins/edison/pull/16/commits/8da6c0f7d8666766e2f0693425c347c0adb492dc.patch"; - postFetch = '' - ${pkgs.buildPackages.patchutils}/bin/filterdiff --include='a/edison-core/*' --strip=1 "$out" > "$tmpfile" - mv "$tmpfile" "$out" - ''; - sha256 = "097wqn8hxsr50b9mhndg5pjim5jma2ym4ylpibakmmb5m98n17zp"; - }) super.EdisonCore; - # 2021-12-26: Too strict bounds on doctest polysemy-plugin = doJailbreak super.polysemy-plugin; @@ -1315,9 +1141,6 @@ self: super: { # upstream: https://github.com/obsidiansystems/which/pull/6 which = doJailbreak super.which; - # https://github.com/ocharles/weeder/issues/15 - weeder = doJailbreak super.weeder; - # 2022-09-20: We have overridden lsp to not be the stackage version. # dhall-lsp-server needs the older 1.4.0.0 lsp dhall-lsp-server = super.dhall-lsp-server.override { @@ -1326,32 +1149,40 @@ self: super: { }); }; - # Requested version bump on upstream https://github.com/obsidiansystems/constraints-extras/issues/32 - constraints-extras = doJailbreak super.constraints-extras; + jsaddle-webkit2gtk = overrideCabal (old: { + postPatch = old.postPatch or "" + '' + sed -i 's/bytestring.*0.11/bytestring/' jsaddle-webkit2gtk.cabal + ''; + }) super.jsaddle-webkit2gtk; - # Necessary for stack - # x509-validation test suite hangs: upstream https://github.com/vincenthz/hs-certificate/issues/120 - # tls test suite fails: upstream https://github.com/vincenthz/hs-tls/issues/434 - x509-validation = dontCheck super.x509-validation; - tls = dontCheck super.tls; # 2022-03-16: lens bound can be loosened https://github.com/ghcjs/jsaddle-dom/issues/19 jsaddle-dom = overrideCabal (old: { postPatch = old.postPatch or "" + '' sed -i 's/lens.*4.20/lens/' jsaddle-dom.cabal ''; - }) super.jsaddle-dom; + }) (doJailbreak super.jsaddle-dom); # Tests disabled and broken override needed because of missing lib chrome-test-utils: https://github.com/reflex-frp/reflex-dom/issues/392 # 2022-03-16: Pullrequest for ghc 9 compat https://github.com/reflex-frp/reflex-dom/pull/433 - reflex-dom-core = doDistribute (unmarkBroken (dontCheck - (appendPatch + reflex-dom-core = overrideCabal (old: { + postPatch = old.postPatch or "" + '' + sed -i 's/template-haskell.*2.17/template-haskell/' reflex-dom-core.cabal + ''; + }) + ((appendPatches [ (fetchpatch { - url = "https://github.com/reflex-frp/reflex-dom/compare/a0459deafd296656b3e99db01ea7f65b89b0948c...56fa8a484ccfc7d3365d07fea3caa430155dbcac.patch"; - sha256 = "sha256-azMF3uX7S1rKKRAVjY+xP2XbQKHvEY/9nU7cH81KKPA="; + url = "https://github.com/reflex-frp/reflex-dom/commit/1814640a14c6c30b1b2299e74d08fb6fcaadfb94.patch"; + sha256 = "sha256-QyX2MLd7Tk0M1s0DU0UV3szXs8ngz775i3+KI62Q3B8="; relative = "reflex-dom-core"; }) - super.reflex-dom-core))); + (fetchpatch { + url = "https://github.com/reflex-frp/reflex-dom/commit/56fa8a484ccfc7d3365d07fea3caa430155dbcac.patch"; + sha256 = "sha256-IogAYJZac17Bg99ZnnFX/7I44DAnHo2PRBWD0iVHbNA="; + relative = "reflex-dom-core"; + }) + ] + (doDistribute (unmarkBroken (dontCheck (doJailbreak super.reflex-dom-core)))))); # Tests disabled because they assume to run in the whole jsaddle repo and not the hackage tarbal of jsaddle-warp. jsaddle-warp = dontCheck super.jsaddle-warp; @@ -1372,7 +1203,7 @@ self: super: { # hasn't bumped upper bounds # test fails because of a "Warning: Unused LANGUAGE pragma" # https://github.com/ennocramer/monad-dijkstra/issues/4 - monad-dijkstra = dontCheck (doJailbreak super.monad-dijkstra); + monad-dijkstra = dontCheck super.monad-dijkstra; # Fixed upstream but not released to Hackage yet: # https://github.com/k0001/hs-libsodium/issues/2 @@ -1380,10 +1211,6 @@ self: super: { libraryToolDepends = (drv.libraryToolDepends or []) ++ [self.buildHaskellPackages.c2hs]; }) super.libsodium; - # Too strict version bounds on haskell-gi - gi-cairo-render = doJailbreak super.gi-cairo-render; - gi-cairo-connector = doJailbreak super.gi-cairo-connector; - svgcairo = appendPatches [ # Remove when https://github.com/gtk2hs/svgcairo/pull/12 goes in. (fetchpatch { @@ -1404,20 +1231,12 @@ self: super: { excludes = ["package.yaml" "stack.yaml" "stack.yaml.lock"]; }) super.espial; - # Missing -Iinclude parameter to doc-tests (pull has been accepted, so should be resolved when 0.5.3 released) - # https://github.com/lehins/massiv/pull/104 - massiv = dontCheck super.massiv; - # Upstream PR: https://github.com/jkff/splot/pull/9 splot = appendPatch (fetchpatch { url = "https://github.com/jkff/splot/commit/a6710b05470d25cb5373481cf1cfc1febd686407.patch"; sha256 = "1c5ck2ibag2gcyag6rjivmlwdlp5k0dmr8nhk7wlkzq2vh7zgw63"; }) super.splot; - # Tests are broken because of missing files in hackage tarball. - # https://github.com/jgm/commonmark-hs/issues/55 - commonmark-extensions = dontCheck super.commonmark-extensions; - # Fails with encoding problems, likely needs locale data. # Test can be executed by adding which to testToolDepends and # $PWD/dist/build/haskeline-examples-Test to $PATH. @@ -1427,12 +1246,6 @@ self: super: { # https://github.com/nikita-volkov/stm-containers/issues/29 stm-containers = doJailbreak super.stm-containers; - # https://github.com/agrafix/Spock/issues/180 - # Ignore Stackage LTS bound so we can compile Spock-core again. All other - # reverse dependencies of reroute are marked as broken in nixpkgs, so - # upgrading reroute is probably unproblematic. - reroute = doDistribute self.reroute_0_7_0_0; - # Test suite fails to compile https://github.com/agrafix/Spock/issues/177 Spock = dontCheck super.Spock; @@ -1492,9 +1305,6 @@ self: super: { ekg-core = self.hasura-ekg-core; }); - # https://github.com/bos/statistics/issues/170 - statistics = dontCheck super.statistics; - hcoord = overrideCabal (drv: { # Remove when https://github.com/danfran/hcoord/pull/8 is merged. patches = [ @@ -1512,24 +1322,20 @@ self: super: { # So let's not go there and just disable the tests altogether. hspec-core = dontCheck super.hspec-core; + # tests seem to require a different version of hspec-core + hspec-contrib = dontCheck super.hspec-contrib; + # github.com/ucsd-progsys/liquidhaskell/issues/1729 liquidhaskell = super.liquidhaskell.override { Diff = self.Diff_0_3_4; }; Diff_0_3_4 = dontCheck super.Diff_0_3_4; - # jailbreaking pandoc-crossref because it has not bumped its upper bound on pandoc - # https://github.com/lierdakil/pandoc-crossref/issues/350 - pandoc-crossref = doJailbreak super.pandoc-crossref; - # The test suite attempts to read `/etc/resolv.conf`, which doesn't work in the sandbox. domain-auth = dontCheck super.domain-auth; - # Too tight version bounds, see https://github.com/haskell-hvr/microaeson/pull/4 - microaeson = doJailbreak super.microaeson; - # - Deps are required during the build for testing and also during execution, # so add them to build input and also wrap the resulting binary so they're in # PATH. - # - Patch can be removed on next package set bump + # - Patch can be removed on next package set bump (for v0.2.11) update-nix-fetchgit = let deps = [ pkgs.git pkgs.nix pkgs.nix-prefetch-git ]; in self.generateOptparseApplicativeCompletions [ "update-nix-fetchgit" ] (overrideCabal (drv: { @@ -1539,18 +1345,7 @@ self: super: { lib.makeBinPath deps }" ''; - }) (addTestToolDepends deps ( - appendPatch (fetchpatch { - url = "https://github.com/expipiplus1/update-nix-fetchgit/commit/2a4229b04aaeec025f1400a39f4e6390af760b54.patch"; - sha256 = "sha256-G3abFWykpvtsh8l3GZhkNUpBo7zRb9Ve4d6mjizysIo="; - includes = [ "src/Update/Nix/FetchGit/Prefetch.hs" ]; - }) - super.update-nix-fetchgit))); - - - # Our quickcheck-instances is too old for the newer binary-instances, but - # quickcheck-instances is only used in the tests of binary-instances. - binary-instances = dontCheck super.binary-instances; + }) (addTestToolDepends deps super.update-nix-fetchgit)); # Raise version bounds: https://github.com/idontgetoutmuch/binary-low-level/pull/16 binary-strict = appendPatches [ @@ -1564,11 +1359,7 @@ self: super: { dontCheck (disableCabalFlag "stan") # Sorry stan is totally unmaintained and terrible to get to run. It only works on ghc 8.8 or 8.10 anyways … ]).overrideScope (lself: lsuper: { - ormolu = doJailbreak lself.ormolu_0_5_0_1; - fourmolu = doJailbreak lself.fourmolu_0_9_0_0; - hlint = enableCabalFlag "ghc-lib" lself.hlint_3_4_1; - ghc-lib-parser-ex = self.ghc-lib-parser-ex_9_2_0_4; - ghc-lib-parser = lself.ghc-lib-parser_9_2_5_20221107; + hlint = enableCabalFlag "ghc-lib" lsuper.hlint; # For most ghc versions, we overrideScope Cabal in the configuration-ghc-???.nix, # because some packages, like ormolu, need a newer Cabal version. # ghc-paths is special because it depends on Cabal for building @@ -1581,21 +1372,13 @@ self: super: { ghc-paths = lsuper.ghc-paths.override { Cabal = null; }; }); - hledger_1_27_1 = doDistribute (super.hledger_1_27_1.override { - hledger-lib = self.hledger-lib_1_27_1; - }); - hls-hlint-plugin = super.hls-hlint-plugin.overrideScope (lself: lsuper: { # For "ghc-lib" flag see https://github.com/haskell/haskell-language-server/issues/3185#issuecomment-1250264515 - hlint = enableCabalFlag "ghc-lib" lself.hlint_3_4_1; - ghc-lib-parser-ex = self.ghc-lib-parser-ex_9_2_0_4; - ghc-lib-parser = lself.ghc-lib-parser_9_2_5_20221107; + hlint = enableCabalFlag "ghc-lib" lsuper.hlint; }); # For -f-auto see cabal.project in haskell-language-server. - ghc-lib-parser-ex_9_2_0_4 = disableCabalFlag "auto" (super.ghc-lib-parser-ex_9_2_0_4.override { - ghc-lib-parser = self.ghc-lib-parser_9_2_5_20221107; - }); + ghc-lib-parser-ex = addBuildDepend self.ghc-lib-parser (disableCabalFlag "auto" super.ghc-lib-parser-ex); # 2021-05-08: Tests fail: https://github.com/haskell/haskell-language-server/issues/1809 hls-eval-plugin = dontCheck super.hls-eval-plugin; @@ -1612,39 +1395,19 @@ self: super: { # 2021-11-20: https://github.com/haskell/haskell-language-server/pull/2374 hls-module-name-plugin = dontCheck super.hls-module-name-plugin; - # 2021-11-20: Testsuite hangs. - # https://github.com/haskell/haskell-language-server/issues/2375 - hls-pragmas-plugin = dontCheck super.hls-pragmas-plugin; - # 2022-09-19: https://github.com/haskell/haskell-language-server/issues/3200 hls-refactor-plugin = dontCheck super.hls-refactor-plugin; # 2022-11-18: https://github.com/haskell/haskell-language-server/commit/c1a7527c4fb348bee6093d9794b7d3e0c8d563f2 hls-fourmolu-plugin = assert super.hls-fourmolu-plugin.version == "1.1.0.0"; doJailbreak super.hls-fourmolu-plugin; - # 2022-10-27: implicit-hie 0.1.3.0 needs a newer version of Cabal-syntax. - implicit-hie = super.implicit-hie.override { - Cabal-syntax = self.Cabal-syntax_3_8_1_0; - }; - - # 2021-03-21: Test hangs - # https://github.com/haskell/haskell-language-server/issues/1562 - # 2021-11-13: Too strict upper bound on implicit-hie-cradle - ghcide = doJailbreak (dontCheck super.ghcide); - - data-tree-print = doJailbreak super.data-tree-print; + # tests require network + ghcide = dontCheck super.ghcide; # 2020-11-15: nettle tests are pre MonadFail change # https://github.com/stbuehler/haskell-nettle/issues/10 nettle = dontCheck super.nettle; - # 2020-11-17: Disable tests for hackage-security because of this issue: - # https://github.com/haskell/hackage-security/issues/247 - hackage-security = dontCheck super.hackage-security; - - # 2020-11-17: persistent-test is ahead of the persistent version in stack - persistent-sqlite = dontCheck super.persistent-sqlite; - # The tests for semver-range need to be updated for the MonadFail change in # ghc-8.8: # https://github.com/adnelson/semver-range/issues/15 @@ -1653,24 +1416,8 @@ self: super: { # https://github.com/obsidiansystems/dependent-sum/issues/55 dependent-sum = doJailbreak super.dependent-sum; - # 2022-03-16 upstream is not updating bounds: https://github.com/srid/rib/issues/169 - rib-core = doJailbreak (super.rib-core.override { relude = doJailbreak super.relude_0_7_0_0; }); - neuron = assert super.neuron.version == "1.0.0.0"; overrideCabal { - # neuron is soon to be deprecated - # Fixing another ghc 9.0 bug here - postPatch = '' - sed -i 's/asks routeConfigRouteLink/asks (\\x -> routeConfigRouteLink x)/' src/lib/Neuron/Web/Route.hs - ''; - } - (doJailbreak (super.neuron.override { - clay = dontCheck self.clay_0_13_3; - relude = doJailbreak self.relude_0_7_0_0; - })); - - reflex-dom-pandoc = super.reflex-dom-pandoc.override { clay = dontCheck self.clay_0_13_3; }; - # 2022-06-19: Disable checks because of https://github.com/reflex-frp/reflex/issues/475 - reflex = dontCheck super.reflex; + reflex = doJailbreak (dontCheck super.reflex); # 2020-11-19: jailbreaking because of pretty-simple bound out of date # https://github.com/kowainik/stan/issues/408 @@ -1685,35 +1432,22 @@ self: super: { (self.generateOptparseApplicativeCompletions [ "hi" ] (super.hinit.override { haskeline = self.haskeline_0_8_2; })); - # 2022-03-19: Keeping jailbreak because of tons of strict bounds: https://github.com/snapframework/snap/issues/220 - snap = doJailbreak super.snap; - - # 2020-11-23: Jailbreaking until: https://github.com/michaelt/text-pipes/pull/29 - pipes-text = doJailbreak super.pipes-text; - # 2020-11-23: https://github.com/Rufflewind/blas-hs/issues/8 blas-hs = dontCheck super.blas-hs; - # 2020-11-23: https://github.com/cdornan/fmt/issues/30 - fmt = dontCheck super.fmt; - - # 2020-11-27: Tests broken - # Upstream issue: https://github.com/haskell-servant/servant-swagger/issues/129 - servant-swagger = dontCheck super.servant-swagger; - # Strange doctest problems # https://github.com/biocad/servant-openapi3/issues/30 servant-openapi3 = dontCheck super.servant-openapi3; # Give hspec 2.10.* correct dependency versions without overrideScope - hspec_2_10_6 = doDistribute (super.hspec_2_10_6.override { - hspec-discover = self.hspec-discover_2_10_6; - hspec-core = self.hspec-core_2_10_6; + hspec_2_10_8 = doDistribute (super.hspec_2_10_8.override { + hspec-discover = self.hspec-discover_2_10_8; + hspec-core = self.hspec-core_2_10_8; }); - hspec-discover_2_10_6 = super.hspec-discover_2_10_6.override { + hspec-discover_2_10_8 = super.hspec-discover_2_10_8.override { hspec-meta = self.hspec-meta_2_10_5; }; - hspec-core_2_10_6 = super.hspec-core_2_10_6.override { + hspec-core_2_10_8 = super.hspec-core_2_10_8.override { hspec-meta = self.hspec-meta_2_10_5; }; @@ -1728,11 +1462,13 @@ self: super: { hercules-ci-agent = lib.pipe super.hercules-ci-agent [ (appendPatches [ - # https://github.com/hercules-ci/hercules-ci-agent/pull/446 - (fetchpatch { - url = "https://github.com/hercules-ci/hercules-ci-agent/commit/99afac77ddb84122a5321494a08e6fe2e95548a1.patch"; - sha256 = "sha256-0dtmNL1rqzeXvXWinfANc57a5LIM3uNnhR3A+p8mH0A="; + # haskell-updates branch, will be merged in 0.9.10 + (fetchpatch2 { + name = "hercules-ci-agent-cachix-1.1"; + url = "https://github.com/hercules-ci/hercules-ci-agent/commit/b76d888548da37a96ae47f1be871de6605d38edd.patch"; + sha256 = "sha256-kqEkDHbatcYS8LuQlGV/1j/6LXWviQoDQAHDr6DBbDU="; stripLen = 1; + includes = [ "*.hs" ]; }) ]) (self.generateOptparseApplicativeCompletions [ "hercules-ci-agent" ]) @@ -1767,6 +1503,10 @@ self: super: { }) ] super.pipes-aeson; + # Needs bytestring 0.11 + # https://github.com/Gabriella439/Haskell-Pipes-HTTP-Library/pull/17 + pipes-http = doJailbreak super.pipes-http; + moto-postgresql = appendPatches [ # https://gitlab.com/k0001/moto/-/merge_requests/3 (fetchpatch { @@ -1799,9 +1539,6 @@ self: super: { # 2020-12-06: Restrictive upper bounds w.r.t. pandoc-types (https://github.com/owickstrom/pandoc-include-code/issues/27) pandoc-include-code = doJailbreak super.pandoc-include-code; - # https://github.com/yesodweb/yesod/issues/1714 - yesod-core = dontCheck super.yesod-core; - # DerivingVia is not allowed in safe Haskell # https://github.com/strake/util.hs/issues/1 util = appendConfigureFlags [ @@ -1818,36 +1555,12 @@ self: super: { ] super.alg; # Break out of overspecified constraint on QuickCheck. - algebraic-graphs = dontCheck super.algebraic-graphs; - attoparsec = doJailbreak super.attoparsec; # https://github.com/haskell/attoparsec/pull/168 - cassava = doJailbreak super.cassava; filepath-bytestring = doJailbreak super.filepath-bytestring; - ghc-source-gen = doJailbreak super.ghc-source-gen; haddock-library = doJailbreak super.haddock-library; - HsYAML = doJailbreak super.HsYAML; - http-api-data = doJailbreak super.http-api-data; - lzma = doJailbreak super.lzma; - psqueues = doJailbreak super.psqueues; - # Break out of overspecified constraint on QuickCheck. - # https://github.com/Gabriel439/Haskell-Nix-Derivation-Library/pull/10 - nix-derivation = doJailbreak super.nix-derivation; - - # Break out of overspecified constraint on QuickCheck. - # Fixed by https://github.com/haskell-servant/servant/commit/08579ca0039410e04d6c36c975ddc20165819db6 - servant-client = doJailbreak super.servant-client; - servant-client-core = doJailbreak super.servant-client-core; - - # overly strict dependency on aeson - # https://github.com/jaspervdj/profiteur/issues/33 - profiteur = doJailbreak super.profiteur; - - # Test suite has overly strict bounds on tasty. + # Test suite has overly strict bounds on tasty, jailbreaking fails. # https://github.com/input-output-hk/nothunks/issues/9 - nothunks = doJailbreak super.nothunks; - - # Allow building with recent versions of tasty. - lukko = doJailbreak super.lukko; + nothunks = dontCheck super.nothunks; # Allow building with older versions of http-client. http-client-restricted = doJailbreak super.http-client-restricted; @@ -1910,7 +1623,8 @@ self: super: { # Test suite has a too strict bound on base # https://github.com/jswebtools/language-ecmascript/pull/88 - language-ecmascript = doJailbreak super.language-ecmascript; + # Test suite doesn't compile anymore + language-ecmascript = dontCheck (doJailbreak super.language-ecmascript); # Too strict bounds on containers # https://github.com/jswebtools/language-ecmascript-analysis/issues/1 @@ -1938,27 +1652,25 @@ self: super: { ] super.nix-thunk; # list `modbus` in librarySystemDepends, correct to `libmodbus` - libmodbus = overrideCabal (drv: { - librarySystemDepends = [ pkgs.libmodbus ]; - }) super.libmodbus; + libmodbus = doJailbreak (addExtraLibrary pkgs.libmodbus super.libmodbus); # 2021-04-02: Outdated optparse-applicative bound is fixed but not realeased on upstream. trial-optparse-applicative = assert super.trial-optparse-applicative.version == "0.0.0.0"; doJailbreak super.trial-optparse-applicative; # 2021-04-02: iCalendar is basically unmaintained. - # There are PRs for bumping the bounds: https://github.com/chrra/iCalendar/pull/46 - iCalendar = overrideCabal { - # Overriding bounds behind a cabal flag - preConfigure = ''substituteInPlace iCalendar.cabal --replace "network >=2.6 && <2.7" "network -any"''; - } (doJailbreak super.iCalendar); - - # Apply patch from master relaxing the version bounds on tasty. - # Can be removed at next release (current is 0.10.1.0). - ginger = appendPatch + # There is a PR for fixing the build: https://github.com/chrra/iCalendar/pull/50 + iCalendar = appendPatches [ (fetchpatch { - url = "https://github.com/tdammers/ginger/commit/bd8cb39c1853d4fb4f663c4c201884575906acea.patch"; - sha256 = "1rdy53k0384g52bnc59j1f0i13hr4lbnbksfsabr4av6zmw9wmzf"; - }) super.ginger; + url = "https://github.com/chrra/iCalendar/commit/66b408f10b2d87929ecda715109b26093c711823.patch"; + sha256 = "sha256-MU5OHUx3L8CaX+xAmoQhAAOMxT7u9Xk1OcOaUHBwK3Y="; + }) + (fetchpatch { + url = "https://github.com/chrra/iCalendar/commit/76f5d2e8328cb985f1ee5176e86a5cdd05a17934.patch"; + sha256 = "sha256-Z5V8VTA5Ml9YIRANQn2aD7dljAbR9dq13N11Y3LZdoE="; + }) + ] super.iCalendar; + + ginger = doJailbreak super.ginger; # Too strict version bounds on cryptonite # https://github.com/obsidiansystems/haveibeenpwned/issues/7 @@ -1968,10 +1680,6 @@ self: super: { # https://github.com/mpickering/hs-speedscope/issues/16 hs-speedscope = doJailbreak super.hs-speedscope; - # Too strict version bounds on tasty - # Can likely be removed next week (2021-04-09) when 1.1.1.1 is released. - fused-effects = doJailbreak super.fused-effects; - # Test suite doesn't support base16-bytestring >= 1.0 # https://github.com/centromere/blake2/issues/6 blake2 = dontCheck super.blake2; @@ -2049,6 +1757,7 @@ self: super: { postPatch = '' sed -i 's/ref-tf.*,/ref-tf,/' jsaddle.cabal sed -i 's/attoparsec.*,/attoparsec,/' jsaddle.cabal + sed -i 's/time.*,/time,/' jsaddle.cabal sed -i 's/(!name)/(! name)/' src/Language/Javascript/JSaddle/Object.hs '' + (drv.postPatch or ""); }) (doJailbreak super.jsaddle); @@ -2098,10 +1807,12 @@ self: super: { gi-gtk-declarative = doJailbreak super.gi-gtk-declarative; gi-gtk-declarative-app-simple = doJailbreak super.gi-gtk-declarative-app-simple; - # 2022-01-16 haskell-ci needs Cabal 3.6, ShellCheck 0.7.2 - haskell-ci = super.haskell-ci.overrideScope (self: super: { + # 2022-01-16 haskell-ci needs Cabal 3.6 + haskell-ci = (appendPatches [ + # Allow building with optparse-applicative 0.17* and ShellCheck 0.8.0 + ./patches/haskell-ci-optparse-applicative-0.17-ShellCheck-0.8.patch + ] super.haskell-ci).overrideScope (self: super: { Cabal = self.Cabal_3_6_3_0; - ShellCheck = self.ShellCheck_0_7_2; cabal-install-parsers = self.cabal-install-parsers_0_4_5; }); @@ -2143,14 +1854,6 @@ self: super: { network = self.network-bsd; }); - # 2021-05-14: Testsuite is failing. - # https://github.com/kcsongor/generic-lens/issues/133 - generic-optics = dontCheck super.generic-optics; - - # Too strict bound on random - # https://github.com/haskell-hvr/missingh/issues/56 - MissingH = doJailbreak super.MissingH; - # Disable flaky tests # https://github.com/DavidEichmann/alpaca-netcode/issues/2 alpaca-netcode = overrideCabal { @@ -2165,10 +1868,6 @@ self: super: { testFlags = [ "-j1" ]; } super.libarchive; - # unrestrict bounds for hashable and semigroups - # https://github.com/HeinrichApfelmus/reactive-banana/issues/215 - reactive-banana = doJailbreak super.reactive-banana; - # Too strict bounds on QuickCheck # https://github.com/muesli4/table-layout/issues/16 table-layout = doJailbreak super.table-layout; @@ -2180,12 +1879,6 @@ self: super: { # https://github.com/plow-technologies/hspec-golden-aeson/issues/17 hspec-golden-aeson = dontCheck super.hspec-golden-aeson; - # 2022-03-21: Newest stylish-haskell needs ghc-lib-parser-9_2 - stylish-haskell = (super.stylish-haskell.override { - ghc-lib-parser = self.ghc-lib-parser_9_2_5_20221107; - ghc-lib-parser-ex = self.ghc-lib-parser-ex_9_2_0_4; - }); - # To strict bound on hspec # https://github.com/dagit/zenc/issues/5 zenc = doJailbreak super.zenc; @@ -2197,7 +1890,7 @@ self: super: { assert super.graphql.version == "1.0.3.0"; appendConfigureFlags [ "-f-json" - ] (lib.warnIf (lib.versionAtLeast self.hspec.version "2.9.0") "@NixOS/haskell: Remove jailbreak for graphql" doJailbreak super.graphql); + ] super.graphql; # https://github.com/ajscholl/basic-cpuid/pull/1 basic-cpuid = appendPatch (fetchpatch { @@ -2223,16 +1916,6 @@ self: super: { # https://github.com/haskell/haskell-language-server/pull/2887 hls-change-type-signature-plugin = dontCheck super.hls-change-type-signature-plugin; - # Too strict bounds on hspec - # https://github.com/haskell-works/hw-hspec-hedgehog/issues/62 - # https://github.com/haskell-works/hw-prim/issues/132 - # https://github.com/haskell-works/hw-ip/issues/107 - # https://github.com/haskell-works/bits-extra/issues/57 - hw-hspec-hedgehog = doJailbreak super.hw-hspec-hedgehog; - hw-prim = doJailbreak super.hw-prim; - hw-ip = doJailbreak super.hw-ip; - bits-extra = doJailbreak super.bits-extra; - # Fixes https://github.com/NixOS/nixpkgs/issues/140613 # https://github.com/recursion-schemes/recursion-schemes/issues/128 recursion-schemes = overrideCabal (drv: { @@ -2267,13 +1950,15 @@ self: super: { # Upgrade of unordered-containers in Stackage causes ordering-sensitive test to fail # https://github.com/commercialhaskell/stackage/issues/6366 # https://github.com/kapralVV/Unique/issues/9 + # Too strict bounds on hashable + # https://github.com/kapralVV/Unique/pull/10 Unique = assert super.Unique.version == "0.4.7.9"; overrideCabal (drv: { testFlags = [ "--skip" "/Data.List.UniqueUnsorted.removeDuplicates/removeDuplicates: simple test/" "--skip" "/Data.List.UniqueUnsorted.repeatedBy,repeated,unique/unique: simple test/" "--skip" "/Data.List.UniqueUnsorted.repeatedBy,repeated,unique/repeatedBy: simple test/" ] ++ drv.testFlags or []; - }) super.Unique; + }) (doJailbreak super.Unique); # https://github.com/AndrewRademacher/aeson-casing/issues/8 aeson-casing = assert super.aeson-casing.version == "0.2.0.0"; overrideCabal (drv: { @@ -2282,23 +1967,6 @@ self: super: { ] ++ drv.testFlags or []; }) super.aeson-casing; - # 2020-11-19: Jailbreaking until: https://github.com/snapframework/heist/pull/124 - # 2021-12-22: https://github.com/snapframework/heist/issues/131 - heist = assert super.heist.version == "1.1.0.1"; - # aeson 2.0 compat https://github.com/snapframework/heist/pull/132 - # not merged in master yet - appendPatch (fetchpatch { - url = "https://github.com/snapframework/heist/compare/de802b0ed5055bd45cfed733524b4086c7e71660...d76adf749d14d7401963d36a22597584c52fc55f.patch"; - sha256 = "sha256-GEIPGYYJO6S4t710AQe1uk3EvBu4UpablrlMDZLBSTk="; - includes = [ "src/*" "heist.cabal"]; - }) - (overrideCabal (drv: { - revision = null; - editedCabalFile = null; - doCheck = false; - }) - (doJailbreak super.heist)); - # https://github.com/emc2/HUnit-Plus/issues/26 HUnit-Plus = dontCheck super.HUnit-Plus; # https://github.com/ewestern/haskell-postgis/issues/7 @@ -2398,23 +2066,6 @@ self: super: { # https://github.com/kuribas/mfsolve/issues/8 mfsolve = dontCheck super.mfsolve; - # GHC 9 support https://github.com/lambdabot/lambdabot/pull/204 - lambdabot-core = appendPatch ./patches/lambdabot-core-ghc9.patch (overrideCabal (drv: { - revision = null; - editedCabalFile = null; - }) super.lambdabot-core); - lambdabot-novelty-plugins = appendPatch ./patches/lambdabot-novelty-plugins-ghc9.patch super.lambdabot-novelty-plugins; - - # Ships a custom cabal-doctest Setup.hs in the release tarball, but the actual - # test suite is commented out, so the required dependency is missing naturally. - # We need to use a default Setup.hs instead. Current master doesn't exhibit - # this anymore, so this override should be fine to remove once the assert fires. - linear-base = assert super.linear-base.version == "0.1.0"; overrideCabal (drv: { - preCompileBuildDriver = drv.preCompileBuildDriver or "" + '' - rm Setup.hs - ''; - }) super.linear-base; - # https://github.com/peti/hopenssl/issues/5 hopenssl = super.hopenssl.override { openssl = pkgs.openssl_1_1; }; @@ -2482,7 +2133,8 @@ self: super: { system-fileio = doJailbreak super.system-fileio; # Bounds too strict on base and ghc-prim: https://github.com/tibbe/ekg-core/pull/43 (merged); waiting on hackage release - ekg-core = assert super.ekg-core.version == "0.1.1.7"; doJailbreak super.ekg-core; + ekg-core = assert super.ekg-core.version == "0.1.1.7"; doJailbreak super.ekg-core; + hasura-ekg-core = doJailbreak super.hasura-ekg-core; # https://github.com/Synthetica9/nix-linter/issues/65 nix-linter = super.nix-linter.overrideScope (self: super: { @@ -2529,6 +2181,13 @@ self: super: { }) super.polynomial); + # Unreleased bound relaxing patch allowing scotty 0.12 + taffybar = appendPatch (pkgs.fetchpatch { + name = "taffybar-allow-scotty-0.12.patch"; + url = "https://github.com/taffybar/taffybar/commit/2e428ba550fc51067526a0350b91185acef72d19.patch"; + sha256 = "1lpcz671mk5cwqffjfi9ncc0d67bmwgzypy3i37a2fhfmxd0y3nl"; + }) ((p: assert p.version == "4.0.0"; p) super.taffybar); + # lucid-htmx has restrictive upper bounds on lucid and servant: # # Setup: Encountered missing or private dependencies: @@ -2553,6 +2212,10 @@ self: super: { doctest-parallel = dontCheck super.doctest-parallel; clash-prelude = dontCheck super.clash-prelude; + # Too strict upper bound on th-desugar, fixed in 3.1.1 + singletons-th = assert super.singletons-th.version == "3.1"; doJailbreak super.singletons-th; + singletons-base = doJailbreak super.singletons-base; + # Ships a broken Setup.hs # https://github.com/lehins/conduit-aeson/issues/1 conduit-aeson = overrideCabal (drv: { @@ -2576,82 +2239,131 @@ self: super: { # https://github.com/phadej/crypt-sha512/issues/13 crypt-sha512 = dontCheck super.crypt-sha512; -} // import ./configuration-tensorflow.nix {inherit pkgs haskellLib;} self super // (let - # We need to build purescript with these dependencies and thus also its reverse - # dependencies to avoid version mismatches in their dependency closure. - # TODO(@cdepillabout): maybe unify with the spago overlay in configuration-nix.nix? - purescriptOverlay = self: super: { - # As of 2021-11-08, the latest release of `language-javascript` is 0.7.1.0, - # but it has a problem with parsing the `async` keyword. It doesn't allow - # `async` to be used as an object key: - # https://github.com/erikd/language-javascript/issues/131 - language-javascript = self.language-javascript_0_7_0_0; - }; + # Too strict upper bound on HTTP + oeis = doJailbreak super.oeis; - # Don't support GHC >= 9.0 yet and need aeson 1.5.* - purescriptStOverride = drv: - let - overlayed = drv.overrideScope ( - lib.composeExtensions - purescriptOverlay - (self: super: { - aeson = self.aeson_1_5_6_0; - }) - ); - in - if lib.versionAtLeast self.ghc.version "9.0" - then dontDistribute (markBroken overlayed) - else overlayed; -in { - purescript = - lib.pipe - (super.purescript.overrideScope purescriptOverlay) - ([ - # PureScript uses nodejs to run tests, so the tests have been disabled - # for now. If someone is interested in figuring out how to get this - # working, it seems like it might be possible. - dontCheck - # The current version of purescript (0.14.5) has version bounds for LTS-17, - # but it compiles cleanly using deps in LTS-18 as well. This jailbreak can - # likely be removed when purescript-0.14.6 is released. - doJailbreak - # Generate shell completions - (self.generateOptparseApplicativeCompletions [ "purs" ]) - ] ++ lib.optionals (lib.versions.majorMinor self.ghc.version == "9.2") [ - markUnbroken - doDistribute - ]); + inherit + (let + # We need to build purescript with these dependencies and thus also its reverse + # dependencies to avoid version mismatches in their dependency closure. + # TODO(@cdepillabout): maybe unify with the spago overlay in configuration-nix.nix? + purescriptOverlay = self: super: { + # As of 2021-11-08, the latest release of `language-javascript` is 0.7.1.0, + # but it has a problem with parsing the `async` keyword. It doesn't allow + # `async` to be used as an object key: + # https://github.com/erikd/language-javascript/issues/131 + language-javascript = self.language-javascript_0_7_0_0; + }; + in { + purescript = + lib.pipe + (super.purescript.overrideScope purescriptOverlay) + ([ + # PureScript uses nodejs to run tests, so the tests have been disabled + # for now. If someone is interested in figuring out how to get this + # working, it seems like it might be possible. + dontCheck + # The current version of purescript (0.14.5) has version bounds for LTS-17, + # but it compiles cleanly using deps in LTS-18 as well. This jailbreak can + # likely be removed when purescript-0.14.6 is released. + doJailbreak + # Generate shell completions + (self.generateOptparseApplicativeCompletions [ "purs" ]) + ]); - purescript-cst = purescriptStOverride super.purescript-cst; - - purescript-ast = purescriptStOverride super.purescript-ast; - - purenix = purescriptStOverride super.purenix; - - # Needs update for ghc-9: - # https://github.com/haskell/text-format/issues/27 - text-format = appendPatch (fetchpatch { - url = "https://github.com/hackage-trustees/text-format/pull/4/commits/949383aa053497b8c251219c10506136c29b4d32.patch"; - sha256 = "QzpZ7lDedsz1mZcq6DL4x7LBnn58rx70+ZVvPh9shRo="; - }) super.text-format; - - # 2022-10-04: Needs newer tasty-dejafu than (currently) in stackage - rec-def = super.rec-def.override { tasty-dejafu = self.tasty-dejafu_2_1_0_0; }; + purenix = super.purenix.overrideScope purescriptOverlay; + }) + purescript + purenix + ; # 2022-11-05: https://github.com/ysangkok/haskell-tzdata/issues/3 tzdata = dontCheck super.tzdata; - # 2022-11-04: The situation around heist-emanote is quite terrible. - # It‘s simply a heist fork because heist is unmaintained. - # Upstream jailbreak is unreleased: https://github.com/srid/heist/commit/988692ea850b3cbe966c7dc4dd26ba1d49647706 - heist-emanote = doJailbreak (dontCheck super.heist-emanote); - # 2022-11-15: Needs newer witch package and brick 1.3 which in turn works with text-zipper 0.12 # Other dependencies are resolved with doJailbreak for both swarm and brick_1_3 swarm = doJailbreak (super.swarm.override { - witch = super.witch_1_1_2_0; - brick = doJailbreak (dontCheck (super.brick_1_3.override { - text-zipper = super.text-zipper_0_12; - })); + brick = doJailbreak (dontCheck super.brick_1_3); }); -}) + + # random <1.2 + unfoldable = doJailbreak super.unfoldable; + + # containers <0.6, semigroupoids <5.3 + data-lens = doJailbreak super.data-lens; + + # transformers <0.3 + monads-fd = doJailbreak super.monads-fd; + + # HTF <0.15 + cases = doJailbreak super.cases; + + # exceptions <0.9 + eprocess = doJailbreak super.eprocess; + + # hashable <1.4, mmorph <1.2 + composite-aeson = doJailbreak super.composite-aeson; + + # composite-aeson <0.8, composite-base <0.8 + compdoc = doJailbreak super.compdoc; + + # composite-aeson <0.8, composite-base <0.8 + haskell-coffee = doJailbreak super.haskell-coffee; + + # Test suite doesn't compile anymore + twitter-types = dontCheck super.twitter-types; + + # base <4.14 + numbered-semigroups = doJailbreak super.numbered-semigroups; + + # Tests open file "data/test_vectors_aserti3-2d_run01.txt" but it doesn't exist + haskoin-core = dontCheck super.haskoin-core; + + # base <4.9, transformers <0.5 + MonadCatchIO-transformers = doJailbreak super.MonadCatchIO-transformers; + + # unix-compat <0.5 + hxt-cache = doJailbreak super.hxt-cache; + + # base <4.16 + fast-builder = doJailbreak super.fast-builder; + + # QuickCheck <2.14 + term-rewriting = doJailbreak super.term-rewriting; + + # tests can't find the test binary anymore - parseargs-example + parseargs = dontCheck super.parseargs; + + # base <4.14 + decimal-literals = doJailbreak super.decimal-literals; + + # multiple bounds too strict + snaplet-sqlite-simple = doJailbreak super.snaplet-sqlite-simple; + + emanote = super.emanote.overrideScope (lself: lsuper: { + commonmark-extensions = lself.commonmark-extensions_0_2_3_2; + }); + + # doctest <0.19 + polysemy = doJailbreak super.polysemy; + + # multiple bounds too strict + co-log-polysemy = doJailbreak super.co-log-polysemy; + co-log-polysemy-formatting = doJailbreak super.co-log-polysemy-formatting; + + # 2022-12-02: Needs newer postgrest package + # 2022-12-02: Hackage release lags behind actual releases: https://github.com/PostgREST/postgrest/issues/2275 + # 2022-12-02: Too strict bounds: https://github.com/PostgREST/postgrest/issues/2580 + # 2022-12-02: Tests require running postresql server + postgrest = dontCheck (doJailbreak (overrideSrc rec { + version = "10.1.1"; + src = pkgs.fetchFromGitHub { + owner = "PostgREST"; + repo = "postgrest"; + rev = "v${version}"; + sha256 = "sha256-ceSPBH+lzGU1OwjolcaE1BCpkKCJrvMU5G8TPeaJesM="; + }; + } super.postgrest)); + + html-charset = dontCheck super.html-charset; +} // import ./configuration-tensorflow.nix {inherit pkgs haskellLib;} self super diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-darwin.nix b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-darwin.nix index 5ad58d1563..11a6bc1fdf 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-darwin.nix +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-darwin.nix @@ -301,12 +301,12 @@ self: super: ({ # Build segfaults unless `fixity-th` is disabled. # https://github.com/tweag/ormolu/issues/927 - ormolu_0_5_0_1 = overrideCabal (drv: { + ormolu = overrideCabal (drv: { libraryHaskellDepends = drv.libraryHaskellDepends ++ [ self.file-embed ]; - }) (disableCabalFlag "fixity-th" super.ormolu_0_5_0_1); - fourmolu_0_9_0_0 = overrideCabal (drv: { + }) (disableCabalFlag "fixity-th" super.ormolu); + fourmolu = overrideCabal (drv: { libraryHaskellDepends = drv.libraryHaskellDepends ++ [ self.file-embed ]; - }) (disableCabalFlag "fixity-th" super.fourmolu_0_9_0_0); + }) (disableCabalFlag "fixity-th" super.fourmolu); } // lib.optionalAttrs pkgs.stdenv.isx86_64 { # x86_64-darwin diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix index 1a578dbafb..b66a34db94 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix @@ -53,6 +53,9 @@ self: super: { Cabal = self.Cabal_3_8_1_0; Cabal-syntax = self.Cabal-syntax_3_8_1_0; process = self.process_1_6_16_0; + # Prevent dependency on doctest which causes an inconsistent dependency + # due to depending on ghc-8.10.7 (with bundled process) vs. process 1.6.16.0 + vector = dontCheck super.vector; }); cabal-install-solver = super.cabal-install-solver.overrideScope (self: super: { Cabal = self.Cabal_3_8_1_0; @@ -60,8 +63,11 @@ self: super: { process = self.process_1_6_16_0; }); + # Additionally depends on OneTuple for GHC < 9.0 + base-compat-batteries = addBuildDepend self.OneTuple super.base-compat-batteries; + # Pick right versions for GHC-specific packages - ghc-api-compat = doDistribute self.ghc-api-compat_8_10_7; + ghc-api-compat = doDistribute (unmarkBroken self.ghc-api-compat_8_10_7); # ghc versions which don‘t match the ghc-lib-parser-ex version need the # additional dependency to compile successfully. @@ -96,17 +102,36 @@ self: super: { executableHaskellDepends = drv.executableToolDepends or [] ++ [ self.repline ]; }) super.hnix); - haskell-language-server = addBuildDepend self.hls-brittany-plugin (super.haskell-language-server.overrideScope (lself: lsuper: { + haskell-language-server = let + # These aren't included in hackage-packages.nix because hackage2nix is configured for GHC 9.2, under which these plugins aren't supported. + # See https://github.com/NixOS/nixpkgs/pull/205902 for why we use `self..scope` + additionalDeps = with self.haskell-language-server.scope; [ + hls-brittany-plugin + hls-haddock-comments-plugin + (unmarkBroken hls-splice-plugin) + (unmarkBroken hls-tactics-plugin) + ]; + in addBuildDepends additionalDeps (super.haskell-language-server.overrideScope (lself: lsuper: { Cabal = lself.Cabal_3_6_3_0; aeson = lself.aeson_1_5_6_0; + lens-aeson = lself.lens-aeson_1_1_3; lsp-types = doJailbreak lsuper.lsp-types; # Checks require aeson >= 2.0 })); - hls-brittany-plugin = super.hls-brittany-plugin.overrideScope (lself: lsuper: { + hls-brittany-plugin = unmarkBroken (addBuildDepends (with self.hls-brittany-plugin.scope; [ + brittany czipwith extra ghc-exactprint ghcide hls-plugin-api hls-test-utils lens lsp-types + ]) (super.hls-brittany-plugin.overrideScope (lself: lsuper: { brittany = doJailbreak lself.brittany_0_13_1_2; aeson = lself.aeson_1_5_6_0; + multistate = unmarkBroken (dontCheck lsuper.multistate); lsp-types = doJailbreak lsuper.lsp-types; # Checks require aeson >= 2.0 - }); + }))); + + # This package is marked as unbuildable on GHC 9.2, so hackage2nix doesn't include any dependencies. + # See https://github.com/NixOS/nixpkgs/pull/205902 for why we use `self..scope` + hls-haddock-comments-plugin = unmarkBroken (addBuildDepends (with self.hls-haddock-comments-plugin.scope; [ + ghc-exactprint ghcide hls-plugin-api hls-refactor-plugin lsp-types unordered-containers + ]) super.hls-haddock-comments-plugin); mime-string = disableOptimization super.mime-string; @@ -118,6 +143,8 @@ self: super: { ghc-prim = self.hashable; }; + hashable = addBuildDepend self.base-orphans super.hashable; + # Doesn't build with 9.0, see https://github.com/yi-editor/yi/issues/1125 yi-core = doDistribute (markUnbroken super.yi-core); @@ -145,4 +172,11 @@ self: super: { # Unnecessarily strict lower bound on base # https://github.com/mrkkrp/megaparsec/pull/485#issuecomment-1250051823 megaparsec = doJailbreak super.megaparsec; + + # Later versions only support GHC >= 9.2 + ghc-exactprint = self.ghc-exactprint_0_6_4; + apply-refact = self.apply-refact_0_9_3_0; + + # Needs OneTuple for ghc < 9.2 + binary-orphans = addBuildDepends [ self.OneTuple ] super.binary-orphans; } diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix index dbb550f6fd..00ecac6db5 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix @@ -66,6 +66,9 @@ self: super: { process = self.process_1_6_16_0; }); + # Additionally depends on OneTuple for GHC < 9.0 + base-compat-batteries = addBuildDepend self.OneTuple super.base-compat-batteries; + # Ignore overly restrictive upper version bounds. aeson-diff = doJailbreak super.aeson-diff; async = doJailbreak super.async; @@ -73,7 +76,7 @@ self: super: { chell = doJailbreak super.chell; Diff = dontCheck super.Diff; doctest = doJailbreak super.doctest; - hashable = doJailbreak super.hashable; + hashable = addBuildDepend self.base-orphans super.hashable; hashable-time = doJailbreak super.hashable-time; hledger-lib = doJailbreak super.hledger-lib; # base >=4.8 && <4.13, easytest >=0.2.1 && <0.3 integer-logarithms = doJailbreak super.integer-logarithms; @@ -123,45 +126,57 @@ self: super: { liquidhaskell = markBroken super.liquidhaskell; # This became a core library in ghc 8.10., so we don‘t have an "exception" attribute anymore. - exceptions = super.exceptions_0_10_5; - - # ghc versions which don‘t match the ghc-lib-parser-ex version need the - # additional dependency to compile successfully. - ghc-lib-parser-ex = addBuildDepend self.ghc-lib-parser super.ghc-lib-parser-ex; + exceptions = super.exceptions_0_10_7; ormolu = super.ormolu_0_2_0_0; # vector 0.12.2 indroduced doctest checks that don‘t work on older compilers vector = dontCheck super.vector; - ghc-api-compat = doDistribute super.ghc-api-compat_8_6; + ghc-api-compat = doDistribute (unmarkBroken super.ghc-api-compat_8_6); mime-string = disableOptimization super.mime-string; - haskell-language-server = addBuildDepend self.hls-brittany-plugin (super.haskell-language-server.overrideScope (lself: lsuper: { - ghc-lib-parser = lself.ghc-lib-parser_8_10_7_20220219; - ghc-lib-parser-ex = addBuildDepend lself.ghc-lib-parser lself.ghc-lib-parser-ex_8_10_0_24; + haskell-language-server = let + # These aren't included in hackage-packages.nix because hackage2nix is configured for GHC 9.2, under which these plugins aren't supported. + # See https://github.com/NixOS/nixpkgs/pull/205902 for why we use `self..scope` + additionalDeps = with self.haskell-language-server.scope; [ + hls-brittany-plugin + hls-haddock-comments-plugin + (unmarkBroken hls-splice-plugin) + (unmarkBroken hls-tactics-plugin) + ]; + in addBuildDepends additionalDeps (super.haskell-language-server.overrideScope (lself: lsuper: { # Pick old ormolu and fourmolu because ghc-lib-parser is not compatible ormolu = doJailbreak lself.ormolu_0_1_4_1; fourmolu = doJailbreak lself.fourmolu_0_3_0_0; - hlint = lself.hlint_3_2_8; aeson = lself.aeson_1_5_6_0; - stylish-haskell = lself.stylish-haskell_0_13_0_0; + lens-aeson = lself.lens-aeson_1_1_3; + stylish-haskell = doJailbreak lself.stylish-haskell_0_13_0_0; lsp-types = doJailbreak lsuper.lsp-types; })); - hls-hlint-plugin = super.hls-hlint-plugin.overrideScope (lself: lsuper: { - # For "ghc-lib" flag see https://github.com/haskell/haskell-language-server/issues/3185#issuecomment-1250264515 - hlint = lself.hlint_3_2_8; - ghc-lib-parser = lself.ghc-lib-parser_8_10_7_20220219; - ghc-lib-parser-ex = addBuildDepend lself.ghc-lib-parser lself.ghc-lib-parser-ex_8_10_0_24; - }); + hlint = self.hlint_3_2_8; - hls-brittany-plugin = super.hls-brittany-plugin.overrideScope (lself: lsuper: { + ghc-lib-parser = self.ghc-lib-parser_8_10_7_20220219; + + # ghc versions which don‘t match the ghc-lib-parser-ex version need the + # additional dependency to compile successfully. + ghc-lib-parser-ex = addBuildDepend self.ghc-lib-parser self.ghc-lib-parser-ex_8_10_0_24; + + hls-brittany-plugin = unmarkBroken (addBuildDepends (with self.hls-brittany-plugin.scope; [ + brittany czipwith extra ghc-exactprint ghcide hls-plugin-api hls-test-utils lens lsp-types + ]) (super.hls-brittany-plugin.overrideScope (lself: lsuper: { brittany = doJailbreak lself.brittany_0_13_1_2; - aeson = lself.aeson_1_5_6_0; - lsp-types = doJailbreak lsuper.lsp-types; - }); + multistate = unmarkBroken (dontCheck lsuper.multistate); + lsp-types = doJailbreak lsuper.lsp-types; # Checks require aeson >= 2.0 + }))); + + # This package is marked as unbuildable on GHC 9.2, so hackage2nix doesn't include any dependencies. + # See https://github.com/NixOS/nixpkgs/pull/205902 for why we use `self..scope` + hls-haddock-comments-plugin = unmarkBroken (addBuildDepends (with self.hls-haddock-comments-plugin.scope; [ + ghc-exactprint ghcide hls-plugin-api hls-refactor-plugin lsp-types unordered-containers + ]) super.hls-haddock-comments-plugin); # has a restrictive lower bound on Cabal fourmolu = doJailbreak super.fourmolu; @@ -189,4 +204,11 @@ self: super: { # Unnecessarily strict lower bound on base # https://github.com/mrkkrp/megaparsec/pull/485#issuecomment-1250051823 megaparsec = doJailbreak super.megaparsec; + + # Needs OneTuple for ghc < 9.2 + binary-orphans = addBuildDepends [ self.OneTuple ] super.binary-orphans; + + # Later versions only support GHC >= 9.2 + ghc-exactprint = self.ghc-exactprint_0_6_4; + apply-refact = self.apply-refact_0_9_3_0; } diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix index 49a97e8b91..d74d70a3bc 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix @@ -72,7 +72,14 @@ self: super: { dec = doJailbreak super.dec; ed25519 = doJailbreak super.ed25519; hackage-security = doJailbreak super.hackage-security; - hashable = overrideCabal (drv: { postPatch = "sed -i -e 's,integer-gmp .*<1.1,integer-gmp < 2,' hashable.cabal"; }) (doJailbreak (dontCheck super.hashable)); + hashable = + pkgs.lib.pipe + super.hashable + [ (overrideCabal (drv: { postPatch = "sed -i -e 's,integer-gmp .*<1.1,integer-gmp < 2,' hashable.cabal"; })) + doJailbreak + dontCheck + (addBuildDepend self.base-orphans) + ]; hashable-time = doJailbreak super.hashable-time; HTTP = overrideCabal (drv: { postPatch = "sed -i -e 's,! Socket,!Socket,' Network/TCP.hs"; }) (doJailbreak super.HTTP); integer-logarithms = overrideCabal (drv: { postPatch = "sed -i -e 's,integer-gmp <1.1,integer-gmp < 2,' integer-logarithms.cabal"; }) (doJailbreak super.integer-logarithms); @@ -85,6 +92,7 @@ self: super: { split = doJailbreak super.split; tar = doJailbreak super.tar; time-compat = doJailbreak super.time-compat; + tuple = addBuildDepend self.base-orphans super.tuple; vector = doJailbreak (dontCheck super.vector); vector-binary-instances = doJailbreak super.vector-binary-instances; vector-th-unbox = doJailbreak super.vector-th-unbox; @@ -99,11 +107,25 @@ self: super: { sha256 = "0rgzrq0513nlc1vw7nw4km4bcwn4ivxcgi33jly4a7n3c1r32v1f"; }) (doJailbreak super.language-haskell-extract); - haskell-language-server = super.haskell-language-server.overrideScope (lself: lsuper: { + haskell-language-server = let + # These aren't included in hackage-packages.nix because hackage2nix is configured for GHC 9.2, under which these plugins aren't supported. + # See https://github.com/NixOS/nixpkgs/pull/205902 for why we use `self..scope` + additionalDeps = with self.haskell-language-server.scope; [ + hls-haddock-comments-plugin + (unmarkBroken hls-splice-plugin) + (unmarkBroken hls-tactics-plugin) + ]; + in addBuildDepends additionalDeps (super.haskell-language-server.overrideScope (lself: lsuper: { # Needed for modern ormolu and fourmolu. # Apply this here and not in common, because other ghc versions offer different Cabal versions. Cabal = lself.Cabal_3_6_3_0; - }); + })); + + # This package is marked as unbuildable on GHC 9.2, so hackage2nix doesn't include any dependencies. + # See https://github.com/NixOS/nixpkgs/pull/205902 for why we use `self..scope` + hls-haddock-comments-plugin = unmarkBroken (addBuildDepends (with self.hls-haddock-comments-plugin.scope; [ + ghc-exactprint ghcide hls-plugin-api hls-refactor-plugin lsp-types unordered-containers + ]) super.hls-haddock-comments-plugin); # The test suite depends on ChasingBottoms, which is broken with ghc-9.0.x. unordered-containers = dontCheck super.unordered-containers; @@ -124,6 +146,8 @@ self: super: { # https://github.com/Soostone/retry/issues/71 retry = dontCheck super.retry; + ghc-api-compat = unmarkBroken super.ghc-api-compat; + # 2021-09-18: cabal2nix does not detect the need for ghc-api-compat. hiedb = overrideCabal (old: { libraryHaskellDepends = old.libraryHaskellDepends ++ [self.ghc-api-compat]; @@ -150,4 +174,11 @@ self: super: { # Restrictive upper bound on base and containers sv2v = doJailbreak super.sv2v; + + # Later versions only support GHC >= 9.2 + ghc-exactprint = self.ghc-exactprint_0_6_4; + apply-refact = self.apply-refact_0_9_3_0; + + # Needs OneTuple for ghc < 9.2 + binary-orphans = addBuildDepends [ self.OneTuple ] super.binary-orphans; } diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix index 9e0ee396b2..a6972a019f 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix @@ -49,12 +49,6 @@ self: super: { # still the case when updating: https://gitlab.haskell.org/ghc/ghc/-/blob/0198841877f6f04269d6050892b98b5c3807ce4c/ghc.mk#L463 xhtml = if self.ghc.hasHaddock or true then null else self.xhtml_3000_2_2_1; - # Tests fail because of typechecking changes - conduit = dontCheck super.conduit; - - # 0.30 introduced support for GHC 9.2. - cryptonite = doDistribute self.cryptonite_0_30; - # cabal-install needs most recent versions of Cabal and Cabal-syntax cabal-install = super.cabal-install.overrideScope (self: super: { Cabal = self.Cabal_3_8_1_0; @@ -67,112 +61,17 @@ self: super: { process = self.process_1_6_16_0; }); - doctest = dontCheck (doJailbreak super.doctest); - - # Tests fail in GHC 9.2 - extra = dontCheck super.extra; - # Jailbreaks & Version Updates - - # This `doJailbreak` can be removed once we have doctest v0.20 - aeson-diff = assert super.doctest.version == "0.18.2"; doJailbreak super.aeson-diff; - - assoc = doJailbreak super.assoc; - async = doJailbreak super.async; - base64-bytestring = doJailbreak super.base64-bytestring; - base-compat = self.base-compat_0_12_2; - base-compat-batteries = self.base-compat-batteries_0_12_2; - binary-instances = doJailbreak super.binary-instances; - ChasingBottoms = doJailbreak super.ChasingBottoms; - constraints = doJailbreak super.constraints; - cpphs = overrideCabal (drv: { postPatch = "sed -i -e 's,time >=1.5 && <1.11,time >=1.5 \\&\\& <1.12,' cpphs.cabal";}) super.cpphs; - data-fix = doJailbreak super.data-fix; - dbus = self.dbus_1_2_27; - dec = doJailbreak super.dec; - ed25519 = doJailbreak super.ed25519; - ghc-byteorder = doJailbreak super.ghc-byteorder; - ghc-exactprint = overrideCabal (drv: { - # HACK: ghc-exactprint 1.4.1 is not buildable for GHC < 9.2, - # but hackage2nix evaluates the cabal file with GHC 8.10.*, - # causing the build-depends to be skipped. Since the dependency - # list hasn't changed much since 0.6.4, we can just reuse the - # normal expression. - inherit (self.ghc-exactprint_1_5_0) src version; - revision = null; editedCabalFile = null; - libraryHaskellDepends = [ - self.fail - self.ordered-containers - self.data-default - ] ++ drv.libraryHaskellDepends or []; - }) super.ghc-exactprint; - ghc-lib = doDistribute self.ghc-lib_9_2_5_20221107; - ghc-lib-parser = doDistribute self.ghc-lib-parser_9_2_5_20221107; - ghc-lib-parser-ex = doDistribute self.ghc-lib-parser-ex_9_2_1_1; - hackage-security = doJailbreak super.hackage-security; - hashable = super.hashable_1_4_1_0; hashable-time = doJailbreak super.hashable-time; - # 1.1.1 introduced support for GHC 9.2.x, so when this assert fails, the jailbreak can be removed - hedgehog = assert super.hedgehog.version == "1.0.5"; doJailbreak super.hedgehog; - HTTP = overrideCabal (drv: { postPatch = "sed -i -e 's,! Socket,!Socket,' Network/TCP.hs"; }) (doJailbreak super.HTTP); - integer-logarithms = overrideCabal (drv: { postPatch = "sed -i -e 's, <1.1, <1.3,' integer-logarithms.cabal"; }) (doJailbreak super.integer-logarithms); - indexed-traversable = doJailbreak super.indexed-traversable; - indexed-traversable-instances = doJailbreak super.indexed-traversable-instances; - lifted-async = doJailbreak super.lifted-async; - lukko = doJailbreak super.lukko; - lzma-conduit = doJailbreak super.lzma-conduit; - ormolu = self.ormolu_0_5_0_1; - parallel = doJailbreak super.parallel; - path = doJailbreak super.path; - polyparse = overrideCabal (drv: { postPatch = "sed -i -e 's, <0.11, <0.12,' polyparse.cabal"; }) (doJailbreak super.polyparse); - primitive = doJailbreak super.primitive; - regex-posix = doJailbreak super.regex-posix; - resolv = doJailbreak super.resolv; - retrie = doDistribute (dontCheck self.retrie_1_2_0_1); - singleton-bool = doJailbreak super.singleton-bool; - servant = doJailbreak super.servant; - servant-swagger = doJailbreak super.servant-swagger; + retrie = doJailbreak super.retrie_1_2_1_1; # Depends on utf8-light which isn't maintained / doesn't support base >= 4.16 # https://github.com/haskell-infra/hackage-trustees/issues/347 # https://mail.haskell.org/pipermail/haskell-cafe/2022-October/135613.html language-javascript_0_7_0_0 = dontCheck super.language-javascript_0_7_0_0; - # 2022-09-02: Too strict bounds on lens - # https://github.com/haskell-servant/servant/pull/1607/files - servant-docs = doJailbreak super.servant-docs; - servant-foreign = doJailbreak super.servant-foreign; - servant-auth = doJailbreak super.servant-auth; - servant-auth-docs = doJailbreak super.servant-auth-docs; - servant-auth-server = doJailbreak super.servant-auth-server; - servant-auth-swagger = doJailbreak super.servant-auth-swagger; - # 2022-09-02: Too strict bounds on lens - # https://github.com/haskell-servant/servant-multipart/pull/64 - servant-multipart = doJailbreak super.servant-multipart; - # 2022-09-02: Too strict bounds on lens - # https://github.com/GetShopTV/swagger2/pull/242 - swagger2 = doJailbreak super.swagger2; - - shelly = doJailbreak super.shelly; - splitmix = doJailbreak super.splitmix; - tasty-hspec = doJailbreak super.tasty-hspec; th-desugar = self.th-desugar_1_14; - time-compat = doJailbreak super.time-compat; - tomland = doJailbreak super.tomland; - type-equality = doJailbreak super.type-equality; - unordered-containers = doJailbreak super.unordered-containers; vector = dontCheck super.vector; - vector-binary-instances = doJailbreak super.vector-binary-instances; - - hpack = overrideCabal (drv: { - # Cabal 3.6 seems to preserve comments when reading, which makes this test fail - # 2021-10-10: 9.2.1 is not yet supported (also no issue) - testFlags = [ - "--skip=/Hpack/renderCabalFile/is inverse to readCabalFile/" - ] ++ drv.testFlags or []; - }) (doJailbreak super.hpack); - - # lens >= 5.1 supports 9.2.1 - lens = doDistribute self.lens_5_2; # Apply patches from head.hackage. language-haskell-extract = appendPatch (pkgs.fetchpatch { @@ -183,22 +82,11 @@ self: super: { # Tests depend on `parseTime` which is no longer available hourglass = dontCheck super.hourglass; - # 0.17.0 introduced support for GHC 9.2.x, so when this assert fails, the whole block can be removed - memory = assert super.memory.version == "0.16.0"; appendPatch (pkgs.fetchpatch { - url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/dfd024c9a336c752288ec35879017a43bd7e85a0/patches/memory-0.16.0.patch"; - sha256 = "1kjganx729a6xfgfnrb3z7q6mvnidl042zrsd9n5n5a3i76nl5nl"; - }) (overrideCabal { - editedCabalFile = null; - revision = null; - } super.memory); - # For -fghc-lib see cabal.project in haskell-language-server. stylish-haskell = enableCabalFlag "ghc-lib" super.stylish-haskell; # For "ghc-lib" flag see https://github.com/haskell/haskell-language-server/issues/3185#issuecomment-1250264515 - hlint = doDistribute (enableCabalFlag "ghc-lib" (super.hlint_3_4_1.override { - ghc-lib-parser-ex = self.ghc-lib-parser-ex_9_2_0_4; - })); + hlint = enableCabalFlag "ghc-lib" super.hlint; # https://github.com/sjakobi/bsb-http-chunked/issues/38 bsb-http-chunked = dontCheck super.bsb-http-chunked; @@ -206,32 +94,12 @@ self: super: { # need bytestring >= 0.11 which is only bundled with GHC >= 9.2 regex-rure = doDistribute (markUnbroken super.regex-rure); jacinda = doDistribute super.jacinda; - some = doJailbreak super.some; - - fourmolu = super.fourmolu_0_9_0_0; - - implicit-hie-cradle = doJailbreak super.implicit-hie-cradle; - # 1.3 introduced support for GHC 9.2.x, so when this assert fails, the jailbreak can be removed - hashtables = assert super.hashtables.version == "1.2.4.2"; doJailbreak super.hashtables; # 2022-08-01: Tests are broken on ghc 9.2.4: https://github.com/wz1000/HieDb/issues/46 - hiedb = doJailbreak (dontCheck super.hiedb); - - apply-refact = doDistribute super.apply-refact_0_10_0_0; - - # 2022-02-05: The following plugins don‘t work yet on ghc9.2. - # Compare: https://haskell-language-server.readthedocs.io/en/latest/supported-versions.html - haskell-language-server = super.haskell-language-server.override { - hls-haddock-comments-plugin = null; - hls-splice-plugin = null; - hls-tactics-plugin = null; - }; + hiedb = dontCheck super.hiedb; # https://github.com/fpco/inline-c/pull/131 inline-c-cpp = (if isDarwin then appendConfigureFlags ["--ghc-option=-fcompact-unwind"] else x: x) super.inline-c-cpp; - - relude = dontCheck self.relude_1_1_0_0; - hermes-json = doJailbreak super.hermes-json; } diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-9.4.x.nix b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-9.4.x.nix index 9a600b5b60..80220b84cf 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-9.4.x.nix +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-ghc-9.4.x.nix @@ -58,10 +58,6 @@ in { # Tests fail because of typechecking changes conduit = dontCheck super.conduit; - # 0.30 introduced support for GHC 9.2. - cryptonite = doDistribute self.cryptonite_0_30; - - doctest = self.doctest_0_20_1; # consequences of doctest breakage follow: double-conversion = markBroken super.double-conversion; @@ -69,8 +65,6 @@ in { ghc-source-gen = checkAgainAfter super.ghc-source-gen "0.4.3.0" "fails to build" (markBroken super.ghc-source-gen); lucid = jailbreakForCurrentVersion super.lucid "2.11.1"; - invariant = jailbreakForCurrentVersion super.invariant "0.5.6"; - implicit-hie-cradle = jailbreakForCurrentVersion super.implicit-hie-cradle "0.5.0.0"; haskell-src-meta = doJailbreak super.haskell-src-meta; @@ -80,13 +74,10 @@ in { # Jailbreaks & Version Updates aeson = self.aeson_2_1_1_0; - lens-aeson = self.lens-aeson_1_2_2; assoc = doJailbreak super.assoc; async = doJailbreak super.async; base64-bytestring = doJailbreak super.base64-bytestring; - base-compat = self.base-compat_0_12_2; - base-compat-batteries = self.base-compat-batteries_0_12_2; binary-instances = doJailbreak super.binary-instances; ChasingBottoms = doJailbreak super.ChasingBottoms; constraints = doJailbreak super.constraints; @@ -99,7 +90,6 @@ in { ghc-lib-parser = doDistribute self.ghc-lib-parser_9_4_3_20221104; ghc-lib-parser-ex = doDistribute self.ghc-lib-parser-ex_9_4_0_0; hackage-security = doJailbreak super.hackage-security; - hashable = super.hashable_1_4_1_0; hashable-time = doJailbreak super.hashable-time; HTTP = overrideCabal (drv: { postPatch = "sed -i -e 's,! Socket,!Socket,' Network/TCP.hs"; }) (doJailbreak super.HTTP); integer-logarithms = overrideCabal (drv: { postPatch = "sed -i -e 's, <1.1, <1.3,' integer-logarithms.cabal"; }) (doJailbreak super.integer-logarithms); @@ -115,20 +105,17 @@ in { regex-posix = doJailbreak super.regex-posix; resolv = doJailbreak super.resolv; singleton-bool = doJailbreak super.singleton-bool; - - # 2022-09-02: Too strict bounds on lens - # https://github.com/GetShopTV/swagger2/pull/242 - swagger2 = doJailbreak super.swagger2; + rope-utf16-splay = doDistribute self.rope-utf16-splay_0_4_0_0; base-orphans = dontCheck super.base-orphans; # Note: Any compilation fixes need to be done on the versioned attributes, # since those are used for the internal dependencies between the versioned # hspec packages in configuration-common.nix. - hspec = self.hspec_2_10_6; - hspec-core = self.hspec-core_2_10_6; + hspec = self.hspec_2_10_8; + hspec-core = self.hspec-core_2_10_8; hspec-meta = self.hspec-meta_2_10_5; - hspec-discover = self.hspec-discover_2_10_6; + hspec-discover = self.hspec-discover_2_10_8; # the dontHaddock is due to a GHC panic. might be this bug, not sure. # https://gitlab.haskell.org/ghc/ghc/-/issues/21619 @@ -136,11 +123,9 @@ in { # We need >= 1.1.2 for ghc-9.4 support, but we don't have 1.1.x in # hackage-packages.nix hedgehog = doDistribute (dontHaddock super.hedgehog_1_2); - # does not work with hedgehog 1.2 yet: + # tasty-hedgehog > 1.3 necessary to work with hedgehog 1.2: # https://github.com/qfpl/tasty-hedgehog/pull/63 - tasty-hedgehog = markBroken super.tasty-hedgehog; - # due to tasty-hedgehog - retry = checkAgainAfter super.tasty-hedgehog "1.3.0.0" "tasty-hedgehog broken" (dontCheck super.retry); + tasty-hedgehog = self.tasty-hedgehog_1_4_0_0; # https://github.com/dreixel/syb/issues/38 syb = dontCheck super.syb; @@ -154,10 +139,6 @@ in { vector = dontCheck super.vector; vector-binary-instances = doJailbreak super.vector-binary-instances; - # fixed in 1.16.x but it's not in hackage-packages yet. - rebase = jailbreakForCurrentVersion super.rebase "1.15.0.3"; - rerebase = jailbreakForCurrentVersion super.rerebase "1.15.0.3"; - hpack = overrideCabal (drv: { # Cabal 3.6 seems to preserve comments when reading, which makes this test fail # 2021-10-10: 9.2.1 is not yet supported (also no issue) @@ -188,20 +169,12 @@ in { jacinda = doDistribute super.jacinda; some = doJailbreak super.some; - # 1.3 introduced support for GHC 9.2.x, so when this assert fails, the jailbreak can be removed - hashtables = assert super.hashtables.version == "1.2.4.2"; doJailbreak super.hashtables; - # 2022-08-01: Tests are broken on ghc 9.2.4: https://github.com/wz1000/HieDb/issues/46 hiedb = dontCheck super.hiedb; # 2022-10-06: https://gitlab.haskell.org/ghc/ghc/-/issues/22260 ghc-check = dontHaddock super.ghc-check; - # 2022-11-06: Override override from common, because Cabal-syntax is included since ghc 9.4. - implicit-hie = super.implicit-hie.override { - Cabal-syntax = null; - }; - # 2022-10-06: plugins disabled for hls 1.8.0.0 based on # https://haskell-language-server.readthedocs.io/en/latest/support/plugin-support.html#current-plugin-support-tiers haskell-language-server = super.haskell-language-server.override { @@ -215,10 +188,7 @@ in { hls-ormolu-plugin = null; hls-rename-plugin = null; hls-stylish-haskell-plugin = null; - hls-tactics-plugin = null; - hls-haddock-comments-plugin = null; hls-retrie-plugin = null; - hls-splice-plugin = null; }; # https://github.com/tweag/ormolu/issues/941 diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml index 89a0bdf77f..73a4a3f3e6 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml @@ -47,6 +47,7 @@ broken-packages: - acme-zalgo - acme-zero - AC-MiniTest + - acousticbrainz-client - AC-Terminal - ActionKid - activehs-base @@ -60,23 +61,22 @@ broken-packages: - adaptive-tuple - adb - addy + - adjunction - adobe-swatch-exchange - - ADPfusion - adp-multi - adtrees - - advent-of-code-ocr - AERN-Basics - aeson-applicative - aeson-bson - aeson-decode - aeson-default - - aeson-dependent-sum - aeson-deriving - aeson-diff-generic - aeson-filthy - aeson-flat - aeson-flatten - aeson-flowtyped + - aeson-gadt-th - aeson-injector - aeson-json-ast - aeson-lens @@ -84,7 +84,6 @@ broken-packages: - aeson-modern-tojson - aeson-options - aeson-parsec-picky - - aeson-picker - aeson-prefix - aeson-schema - aeson-schemas @@ -102,13 +101,14 @@ broken-packages: - agda-snippets - agda-unused - AGI - - ag-pictgen - AhoCorasick - aig - airbrake + - air-extra - airship - airtable-api - air-th + - aivika-gpss - ajhc - AlanDeniseEricLauren - alerta @@ -119,14 +119,18 @@ broken-packages: - algebra-dag - algebraic-classes - algebraic-prelude + - algorithmic-composition-additional + - algorithmic-composition-complex - AlgorithmW - algo-s - align-text - ally-invest + - alpaca-netcode - alphachar - alpino-tools - alsa - alsa-midi + - alsa-seq - altcomposition - alternative-extra - alternative-io @@ -139,12 +143,14 @@ broken-packages: - AMI - amqp-conduit - analyze + - analyze-client - anansi-pandoc - android - android-activity - android-lint-summary - angel - angle + - animalcase - Animas - animascii - animate @@ -161,7 +167,9 @@ broken-packages: - antlr-haskell - anydbm - Aoide + - aop-prelude - aosd + - apache-md5 - apart - api-builder - api-rpc-factom @@ -184,6 +192,7 @@ broken-packages: - arbor-monad-logger - arbor-monad-metric - arbor-postgres + - arch-hs - archiver - archlinux - archnews @@ -213,7 +222,7 @@ broken-packages: - ascii-flatten - ascii-string - ascii-vector-avc - - asil + - asif - asn1-codec - asn1-data - AspectAG @@ -231,11 +240,13 @@ broken-packages: - async-manager - async-timer - aterm + - atlassian-connect-descriptor - atndapi + - atom - atomic-primops-vector - - atom-msp430 - atomo - atp-haskell + - ats-pkg - ats-setup - ats-storable - attempt @@ -257,14 +268,12 @@ broken-packages: - authenticate-ldap - authinfo-hs - auto - - autodocodec-yaml - autom - autonix-deps - autopack - avatar-generator - aviation-units - avl-static - - avro - avro-piper - avr-shake - avwx @@ -301,9 +310,12 @@ broken-packages: - barrie - barrier - barrier-monad + - base16-lens + - base32-lens - base58address - base62 - base64-conduit + - base64-lens - base-compat-migrate - base-encoding - base-feature-macros @@ -332,18 +344,17 @@ broken-packages: - bencoding-lens - berkeleydb - BerkeleyDBXML + - berp - bert - besout - bet - betacode - bgmax - bgzf - - bhoogle - bibdb - bidi-icu - bidirectional - bidirectional-instances - - bidirectionalization-combined - bidispec - bidispec-extras - BiGUL @@ -353,8 +364,9 @@ broken-packages: - binary-derive - binary-ext - binary-indexed-tree - - binary-io + - binary-parsers - binary-protocol + - binary-strict - binary-tree - binary-typed - BinderAnn @@ -387,14 +399,14 @@ broken-packages: - bindings-wlc - bind-marshal - binembed - - bins + - binrep + - binsm - bio - - BiobaseBlast - BiobaseNewick - - BiobaseTurner - biocore - biohazard - bio-sequence + - birds-of-paradise - biscuit-haskell - bisect-binary - bishbosh @@ -408,15 +420,14 @@ broken-packages: - bits-extras - bitspeak - bit-stream + - bitstream - BitStringRandomMonad - BitSyntax - bitx-bitcoin - bizzlelude-js - bkr - blakesum - - Blammo - blas - - blaze-html-contrib - blaze-html-hexpat - blaze-html-truncate - blaze-json @@ -428,6 +439,7 @@ broken-packages: - blockchain - blockhash - Blogdown + - BlogLiterately - bloomfilter-redis - blosum - blubber-server @@ -439,18 +451,15 @@ broken-packages: - bolt - boltzmann-brain - bookhound - - bookkeeper + - boolean-like - boolean-normal-forms - boolexpr - boombox - - boots-app - boring-window-switcher - borsh - bot - botpp - bottom - - boundingboxes - - bowntz - box - bpath - BPS @@ -460,9 +469,11 @@ broken-packages: - Bravo - brians-brain - brick-dropdownmenu - - brick-panes + - brick-filetree - bricks-internal + - brick-skylighting - brillig + - broadcast-chan-tests - broccoli - brok - broker-haskell @@ -474,7 +485,6 @@ broken-packages: - bson-generics - bson-mapping - bsparse - - btree-concurrent - btrfs - buffer - buffer-builder-aeson @@ -491,6 +501,7 @@ broken-packages: - bumper - bunz - burst-detection + - bus-pirate - buster - Buster - butter @@ -514,6 +525,7 @@ broken-packages: - bytestring-substring - bytestring-time - bytestring-typenats + - bzlib - bzlib-conduit-jappie - c10k - c2ats @@ -527,7 +539,6 @@ broken-packages: - cabal-constraints - cabal-db - cabal-dependency-licenses - - cabal-detailed-quickcheck - cabal-dev - cabal-dir - cabal-edit @@ -564,43 +575,40 @@ broken-packages: - caching - cacophony - cafeteria-prelude - - caffegraph - cairo-core - cake3 - cal3d - - calamity - caledon - calenderweek - call-alloy - cal-layout - call-haskell-from-anything - call-plantuml - - camfort - canon - canonical-filepath - - canonical-json - canteven-listen-http - canteven-log - canteven-parsedate - cantor + - capataz - capped-list - capri - caps - - captcha-core - caramia - carbonara - carettah - CarneadesDSL - carte - Cartesian + - casa-abbreviations-and-acronyms - casadi-bindings-internal - Cascade - cascading - caseof - - cases - cas-hashable - casr-logbook - casr-logbook-types + - cassandra-cql - Cassava - cassava-conduit - cassava-records @@ -609,6 +617,7 @@ broken-packages: - catamorphism - Catana - catch-fd + - category-printf - category-traced - catnplus - cautious-file @@ -624,6 +633,7 @@ broken-packages: - CC-delcont-ref-tf - cci - ccnx + - cdp - c-dsl - cedict - cef @@ -637,15 +647,16 @@ broken-packages: - cfn-flip - cg - cgen - - cgi-utils + - cgi - cgroup-rts-threads + - chakra - chalkboard - chalmers-lava2000 + - ChannelT - character-cases - charter - chart-histogram - Chart-simple - - chart-svg - chaselev-deque - chatty-text - chatwork @@ -653,27 +664,26 @@ broken-packages: - Checked - checkmate - chez-grater - - chiasma + - chiphunk - Chitra - choose - chorale - chp - - chp-spec - - chr-data - ChristmasTree + - chronograph - chr-parse - chunky - church - church-maybe - - church-pair - - churros - - cicero-api - cielo - cil - cinvoke - c-io - cio + - cipher-aes128 - cipher-blowfish + - cipher-des + - circle - circlehs - citeproc-hs - cjk @@ -685,18 +695,18 @@ broken-packages: - clanki - clarifai - CLASE - - clashilator - - clash-multisignal - - clash-prelude-quickcheck + - clash-prelude - Clash-Royale-Hack-Cheats - - clash-systemverilog - - clash-verilog - - clash-vhdl - ClassLaws - classy-influxdb-simple - classy-parallel - classyplate - ClassyPrelude + - clay + - clckwrks-plugin-bugs + - clckwrks-plugin-mailinglist + - clckwrks-theme-clckwrks + - clckwrks-theme-geo-bootstrap - cld2 - Clean - clean-unions @@ -704,7 +714,6 @@ broken-packages: - clexer - CLI - cli-builder - - clickhouse-haskell - clif - clifm - cli-git @@ -714,13 +723,16 @@ broken-packages: - clipper - clisparkline - clit + - clocked - clock-extras - clogparse - clone-all - closure - cloudfront-signer - clr-inline + - clr-typed - cluss + - clustering - cmark-highlight - cmark-patterns - cmark-sections @@ -738,27 +750,25 @@ broken-packages: - cobot-tools - code-builder - codec-beam - - codec-libevent - codecov-haskell - codeforces-cli - codepad - - codeworld-api - codex - codo-notation + - coercible-utils - coin - coinbase-pro - - cointracking-imports + - colchis - collada-output - collapse-util + - collate - collections - collections-api - co-log-concurrent - co-log-json - - co-log-polysemy-formatting - co-log-sys - colonnade - colorless - - colors - coltrane - com - comark-syntax @@ -767,21 +777,21 @@ broken-packages: - combinatorial-problems - combinator-interactive - combobuffer + - comic - Command - commander + - commander-cli - Commando - - commsec + - commodities + - compact - Compactable - compact-list - compact-map - - compact-mutable-vector - compact-sequences - - compact-socket - compact-string - compact-string-fix - comparse - compdata - - compdoc - compendium-client - competition - compilation @@ -789,9 +799,8 @@ broken-packages: - composable-associations-aeson - compose-trans - composite-aeson-path + - composite-aeson-refined - composite-cassava - - composite-dhall - - composite-lens-extra - composition-tree - compressed - compression @@ -799,17 +808,20 @@ broken-packages: - computations - concrete-relaxng-parser - concrete-typerep - - concur-core + - concurrency-benchmarks - concurrent-buffer - Concurrent-Cache - Concurrential - concurrent-st - concurrent-state + - concurrent-supply - concurrent-utilities + - conditional-restriction-parser - condorcet - conductive-base - conduit-audio-lame - conduit-audio-samplerate + - conduit-connection - conduit-find - conduit-iconv - conduit-network-stream @@ -817,10 +829,12 @@ broken-packages: - conduit-tokenize-attoparsec - conduit-vfs - conf + - conferer-dhall - conferer-hspec - conferer-provider-json - conferer-snap - conferer-source-json + - conferer-warp - confide - ConfigFileTH - config-parser @@ -838,16 +852,19 @@ broken-packages: - consistent - console-program - const-math-ghc-plugin + - constrained - constrained-categories - constrained-dynamic - constrained-monads - ConstraintKinds + - constraints-deriving - constraints-emerge - constr-eq - constructive-algebra - consul-haskell - Consumer - containers-benchmark + - containers-unicode-symbols - containers-verified - ContArrow - ContextAlgebra @@ -855,6 +872,7 @@ broken-packages: - contiguous-checked - contiguous-fft - continue + - contracheck-applicative - Contract - contra-tracers - control-dsl @@ -862,25 +880,26 @@ broken-packages: - control-monad-failure - control-monad-failure-mtl - Control-Monad-ST2 - - contstuff - - copilot-sbv + - contstuff-monads-tf + - contstuff-transformers + - convert-annotation - copr - coquina - COrdering - core - corebot-bliki + - core-compiler - CoreDump - CoreErlang - core-haskell - corenlp-parser - - core-telemetry + - core-warn - Coroutine - coroutine-object - CouchDB - couchdb-conduit - couch-hs - counter - - country - courier - court - coverage @@ -898,12 +917,12 @@ broken-packages: - craftwerk - crawlchain - crc16 + - crc32c - crdt - crdt-event-fold - credential-store - critbit - criterion-cmp - - criterion-compare - criterion-plus - criterion-to-html - criu-rpc-types @@ -926,7 +945,7 @@ broken-packages: - csa - cse-ghc-plugin - csg - - CSPM-FiringRules + - csound-expression-dynamic - CSPM-Frontend - cspretty - css @@ -935,25 +954,28 @@ broken-packages: - css-syntax - C-structs - csv-nptools + - csv-sip - ctemplate - ctkl - cuboid - cuckoo-filter - curl-aeson - curl-runnings + - curly-expander - currency-convert - curry-base - CurryDB - - curryer-rpc - curry-frontend - curryrs - curves - custom-prelude + - cutter - cut-the-crap - CV - d3js - dag - DAG-Tournament + - dahdit - damnpacket - danibot - dao @@ -966,11 +988,12 @@ broken-packages: - darkplaces-rcon - darkplaces-text - data-accessor-monadLib + - data-accessor-monads-fd - data-accessor-monads-tf - data-accessor-template + - data-ascii - data-aviary - data-base - - database-id-groundhog - database-migrate - database-study - data-check @@ -978,11 +1001,11 @@ broken-packages: - data-concurrent-queue - data-construction - data-constructors + - data-default-instances-new-base - data-dispersal - data-diverse - datadog - data-easy - - data-elevator - data-embed - data-emoticons - data-filepath @@ -993,7 +1016,9 @@ broken-packages: - DataIndex - data-ivar - data-kiln - - data-lens + - data-lens-fd + - data-lens-ixset + - data-lens-template - datalog - data-map-multikey - data-named @@ -1014,13 +1039,11 @@ broken-packages: - data-standards - data-store - data-stringmap - - data-sword - DataTreeView - data-type - data-util - data-validation - data-variant - - DataVersion - dates - datetime - datetime-sb @@ -1041,17 +1064,18 @@ broken-packages: - dcpu16 - ddc-base - ddc-code - - ddc-core - dead-code-detection - Deadpan-DDP - dead-simple-json + - debug-me - debug-tracy - decepticons - - decimal-literals + - decision-diagrams - DecisionTree - decoder-conduit - deepcontrol - DeepDarkFantasy + - deepl - deepseq-bounded - deepseq-instances - deepseq-magic @@ -1065,23 +1089,26 @@ broken-packages: - dense - dense-int-set - dependent-hashmap - - dependent-monoidal-map - - dep-t - deptrack-core + - dep-t-value - derangement - derivation-trees - derive - derive-enumerable - derive-gadt - deriveJsonNoPrefix + - derive-lifted-instances - derive-monoid - derive-trie + - deriving-openapi3 - derp-lib - describe + - descriptive - deterministic-game-engine - detrospector - deunicode - devil + - df1-html - Dflow - dfsbuild - dgim @@ -1096,11 +1123,13 @@ broken-packages: - dia-base - diagrams-boolean - diagrams-builder + - diagrams-gtk - diagrams-pdf - diagrams-qrcode - diagrams-rubiks-cube - diagrams-tikz - dialogflow-fulfillment + - dialogue - dib - dice2tex - dicom @@ -1108,6 +1137,7 @@ broken-packages: - dictparser - diet - diffcabal + - differential - DifferentialEvolution - diff-gestalt - diffmap @@ -1116,13 +1146,14 @@ broken-packages: - digestive-foundation-lucid - digestive-functors-aeson - digestive-functors-happstack + - digestive-functors-snap - digest-pure - DigitalOcean - digitalocean-kzs - digits + - digraph - dijkstra-simple - DimensionalHash - - dimensional-tf - diophantine - diplomacy - direct-binary-files @@ -1131,9 +1162,8 @@ broken-packages: - direct-http - direct-plugins - direm - - dirtree - - discord-haskell - discordian-calendar + - discord-register - discord-types - discrete - DiscussionSupportSystem @@ -1141,7 +1171,7 @@ broken-packages: - disjoint-containers - disjoint-set - disjoint-set-stateful - - disk-bytes + - diskhash - Dist - distance - distributed-closure @@ -1152,37 +1182,37 @@ broken-packages: - djinn-th - dmcc - dmenu - - dnf-repo - - dns-patterns + - dnscache - dnsrbl - dnssd - dobutok - dobutokO - - dobutokO-frequency - doccheck - docidx - docker-build-cacher - dockercook - dockerfile-creator + - docopt - docrecords - doctest-discover-configurator + - doctest-extract - doctest-prop - docusign-example - docvim - DOH - doi + - domain-optics - dom-parser - domplate - dom-selector - - do-notation - do-notation-dsl - dormouse-uri - do-spaces - dotfs - dot-linker + - dotparse - doublezip - doublify-toolkit - - downhill - downloader - dozenal - dozens @@ -1198,11 +1228,10 @@ broken-packages: - DrIFT - DrIFT-cabalized - drifter-postgresql - - drinkery - drmaa - drone - dropbox - - DSA + - drunken-bishop - dsc - ds-kanren - dsmc @@ -1211,20 +1240,24 @@ broken-packages: - dstring - DTC - dtd-text + - dtw - dualizer - duckling - duet + - dumb-cas - dump-core - dunai-core - Dung - duplo - dura + - duration - dvault - dvdread - dvi-processing - dwarf - dwarfadt - dyckword + - dyna-brick - dynamic-graphs - dynamic-mvector - dynamic-object @@ -1249,7 +1282,7 @@ broken-packages: - easytest - ebeats - ebnf-bff - - eccrypto-ed25519-bindings + - eccrypto - ecma262 - ecta-plugin - ecu @@ -1257,24 +1290,23 @@ broken-packages: - ede - edenmodules - edis - - EdisonAPI - edit - edit-lenses - editline - effectful-st - effect-handlers - effective-aspects - - effect-monad - effect-stack - effet - effin + - eflint - egison-pattern-src - ehaskell - - ehlo - ehs - eibd-client-simple - eigen - Eight-Ball-Pool-Hack-Cheats + - eio - EitherT - either-unwrap - ejdb2-binding @@ -1287,9 +1319,9 @@ broken-packages: - ekg-rrd - ekg-statsd - elevator + - eliminators - elision - elm-export-persistent - - elminator - elm-street - elm-websocket - elocrypt @@ -1303,9 +1335,11 @@ broken-packages: - Empty - empty-monad - enchant + - encode-string - encoding - encoding-io - encryptable + - endo - engine-io - entwine - EnumContainers @@ -1325,9 +1359,9 @@ broken-packages: - epic - epi-sim - epoll - - eprocess - epubname - Eq + - equal-files - EqualitySolver - equational-reasoning-induction - equeue @@ -1345,10 +1379,10 @@ broken-packages: - ert - escape-artist - escoger + - espial - esqueleto-pgcrypto - ess - - essence-of-live-coding-gloss-example - - essence-of-live-coding-pulse-example + - essence-of-live-coding - EstProgress - Etage - etc @@ -1356,22 +1390,20 @@ broken-packages: - ethereum-rlp - eurofxref - evdev-streamly - - eve + - eve-cli - eved - event - event-driven - - eventful-sql-common - eventsource-api + - eventsourced - eventstore - - eventuo11y - - eventuo11y-dsl - - evoke - - ewe - exact-cover - exact-real-positional - except-exceptions - exceptional - exceptionfree-readfile + - exception-monads-fd + - exception-via - exchangerates - execs - executor @@ -1383,13 +1415,12 @@ broken-packages: - exinst - exists - exitcode - - exon - exp-cache + - exp-extended - explain - explicit-constraint-lens - explicit-determinant - explicit-iomodes - - exploring-interpreters - exposed-containers - expression-parser - expressions @@ -1397,9 +1428,10 @@ broken-packages: - extcore - extended-categories - extended-containers + - extensible-data - extensible-effects-concurrent - extensible-skeleton - - Extra + - external-sort - extractelf - ez3 - ez-couch @@ -1417,28 +1449,34 @@ broken-packages: - falling-turnip - fastbayes - fast-combinatorics + - fast-downward - fastedit + - fastly - fast-nats - fastpbkdf2 - FastPush + - fast-tagsoup-utf8-only - FastxPipe - fathead-util + - fay - fbmessenger-api - fb-persistent - fca - fcache - fcf-composite + - fcf-graphs - fcg - - fckeditor - fclabels-monadlib - fcm-client - fdo-trash + - feather - feature-flipper - fedora-packages - feed-cli - feed-collect - feed-crawl - fei-cocoapi + - feldspar-language - fenfire - fernet - FerryCore @@ -1449,6 +1487,7 @@ broken-packages: - fgl-extras-decompositions - fib - fibon + - fields - fieldwise - fig - file-collection @@ -1472,7 +1511,6 @@ broken-packages: - find-source-files - fingertree-psqueue - fingertree-tf - - finitary - finite - FiniteCategories - finite-fields @@ -1484,6 +1522,7 @@ broken-packages: - fits-parse - fixed-point - fixedprec + - fixed-precision - fixed-storable-array - fixed-timestep - fixed-width @@ -1501,10 +1540,11 @@ broken-packages: - flexible-time - flickr - flink-statefulfun - - float128 - float-binstring - floating-bits + - flock - flowdock + - flowdock-api - flowdock-rest - flow-er - flowlocks-framework @@ -1533,11 +1573,14 @@ broken-packages: - for-free - forger - ForkableT + - formal - formattable + - forml - formura - Fortnite-Hack-Cheats-Free-V-Bucks-Generator - fortran-src-extras - foscam-filename + - fpe - FPretty - fptest - fquery @@ -1562,10 +1605,12 @@ broken-packages: - freesound - free-theorems - FreeTypeGL + - freetype-simple - free-v-bucks-generator-no-survey - free-v-bucks-generator-ps4-no-survey - freq - fresh + - fresnel - friday-devil - friday-scale-dct - frown @@ -1599,7 +1644,6 @@ broken-packages: - fused-effects-exceptions - fused-effects-mwc-random - fused-effects-resumable - - fused-effects-squeal - fusion - futhask - futun @@ -1607,11 +1651,13 @@ broken-packages: - fuzzyfind - fuzzy-timings - fwgl + - fxpak - g4ip - galois-field - gameclock - game-probability - gamgee + - Gamgine - gamma - Ganymede - garepinoh @@ -1624,16 +1670,16 @@ broken-packages: - gegl - gelatin - gemcap - - gemini-exports + - gemini-server - gemstone - gencheck - gender - genders + - general-allocate - general-prelude - GeneralTicTacToe - generator - generators - - generic-accessors - generic-binary - generic-church - generic-enum @@ -1641,21 +1687,24 @@ broken-packages: - generic-labels - generic-lens-labels - generic-lucid-scaffold + - generic-match - generic-maybe - generic-override - generic-pretty + - generic-pretty-instances + - generic-records - genericserialize - generic-server - generics-mrsop - generic-storable - generic-tree - - generic-trie - generic-xml - generic-xmlpickler - genetics - genifunctors - gen-imports - geniplate + - geniplate-mirror - gen-passwd - genprog - gentlemark @@ -1670,13 +1719,13 @@ broken-packages: - geos - Get - getflag - - gf - GGg - ggtsTC + - ghc-api-compat - ghc-clippy-plugin - ghc-core-smallstep - ghc-datasize - - ghc-debug-convention + - ghc-debug-client - ghc-dump-tree - ghc-dup - ghc-events-analyze @@ -1707,10 +1756,8 @@ broken-packages: - ghc-srcspan-plugin - ghc-syb - ghc-syb-utils - - ghc-tags - ghc-tags-core - ghc-time-alloc-prof - - ghcup - ghc-usage - gh-labeler - gi-adwaita @@ -1720,18 +1767,19 @@ broken-packages: - gi-gio-hs-list-model - gi-graphene - gi-gsttag + - gi-gtk-declarative - gi-gtk-layer-shell - gi-gtksheet - gi-handy - - ginger - gingersnap - ginsu - - gi-pangocairo + - gipeda - giphy-api - gist - GiST - git - git-all + - git-brunch - git-checklist - git-cuk - git-date @@ -1747,10 +1795,8 @@ broken-packages: - gitlab-api - gitlab-haskell - gitlib-cmdline - - gitlib-libgit2 - gitlib-utils - git-repair - - gitson - gitter - git-vogue - glade @@ -1772,14 +1818,12 @@ broken-packages: - glpk-headers - gltf-codec - glue - - gluturtle - g-npm - goa - goal-core - goatee - gochan - godot-haskell - - godot-megaparsec - gofer-prelude - gogol-core - gooey @@ -1792,14 +1836,17 @@ broken-packages: - googlepolyline - google-search - google-server-api + - google-static-maps - google-translate - gopherbot - gopro-plus - gore-and-ash + - gothic - GotoT-transformers + - gotta-go-fast - gpah - GPipe - - GPipe-GLFW4 + - GPipe-Core - gpmf - gpx-conduit - graceful @@ -1807,7 +1854,6 @@ broken-packages: - Grafos - grakn - grammatical-parsers - - grapefruit-frp - Graph500 - Graphalyze - graphbuilder @@ -1815,9 +1861,9 @@ broken-packages: - graphics-drawingcombinators - graphics-formats-collada - graph-matchings + - graphmod - graphmod-plugin - graphql-api - - graphql-spice - graphql-utils - graphql-w-persistent - graph-rewriting @@ -1833,22 +1879,22 @@ broken-packages: - greg-client - gremlin-haskell - Grempa - - grenade - greplicate - gridfs - grids - grm - GroteTrap - - groundhog-mysql - - groundhog-th + - groundhog + - group-by-date + - groups-generic - group-theory - group-with - growler + - grow-vector - grpc-api-etcd - gsl-random - gstreamer - GTALib - - gtfs-realtime - gtk2hs-cast-th - gtk2hs-hello - gtk2hs-rpn @@ -1867,21 +1913,20 @@ broken-packages: - h2c - haar - HABQT + - hack2-contrib - hack2-handler-warp - hackage2hwn - hackage-api - hackage-diff + - hackage-mirror - hackage-processing - hackage-proxy - hackager - - hackage-repo-tool - hackage-server - hackage-whatsnew - hackernews - hack-frontend-happstack - hack-handler-cgi - - hack-handler-happstack - - hack-handler-kibro - HackMail - hackport - hactor @@ -1892,6 +1937,7 @@ broken-packages: - haddock-test - hadoop-formats - hadoop-rpc + - hadoop-streaming - hafar - Haggressive - hahp @@ -1922,6 +1968,9 @@ broken-packages: - halipeto - halive - halma + - halves + - ham + - HaMinitel - hampp - hamsql - hamtmap @@ -1931,6 +1980,7 @@ broken-packages: - HandlerSocketClient - handsy - Hangman + - HangmanAscii - hannahci - hans - hanspell @@ -1947,14 +1997,17 @@ broken-packages: - happstack-monad-peel - happstack-server-tls-cryptonite - happstack-util + - happstack-yui - HAppS-Util - happybara - happybara-webkit-server + - happy-hour - HappyTree - hapstone - HaPy - haquery - harchive + - hardware-edsl - harfbuzz-pure - HARM - HarmTrace-Base @@ -1962,13 +2015,14 @@ broken-packages: - harpy - harvest-api - has + - hasbolt - HasCacBDD - hascar + - hascard - hascas - hash - hashable-extras - hashable-generics - - hashable-orphans - hashabler - hashed-storage - hashring @@ -1986,12 +2040,13 @@ broken-packages: - haskell98 - haskell98libraries - haskell-abci + - haskell-admin-core - HaskellAnalysisProgram - haskell-awk + - haskell-bcrypt - haskell-bitmex-rest - haskell-brainfuck - haskell-cnc - - haskell-coffee - haskell-compression - haskell-conll - haskell-course-preludes @@ -2008,7 +2063,7 @@ broken-packages: - haskell-in-space - haskell-kubernetes - HaskellLM - - haskell-lsp + - haskell-lsp-types - haskell-ml - haskell-mpfr - haskell-names @@ -2047,8 +2102,8 @@ broken-packages: - haskhol-core - haskmon - haskoin - - haskoin-core - haskoin-util + - haskoin-wallet - haskore - haskore-vintage - HaskRel @@ -2056,19 +2111,21 @@ broken-packages: - hasktorch-ffi-th - hasktorch-signatures-partial - hasktorch-signatures-support - - haskus-binary + - haskus-utils-variant - haskyapi - hasmin - haspara + - hasparql-client - hasql-backend - hasql-class - hasql-cursor-transaction - hasql-explain-tests - hasql-generic + - hasql-interpolate - hasql-resource-pool - hasql-simple - - hasql-streams-example - - hasql-transaction-io + - hasql-streams-core + - hasql-url - hastache - haste - haste-prim @@ -2080,11 +2137,12 @@ broken-packages: - haven - haverer - hax - - haxl-facebook + - haxl - haxparse - haxr-th - hayland - hayoo-cli + - hb3sum - hBDD-CMUBDD - hBDD-CUDD - hbeanstalk @@ -2100,6 +2158,7 @@ broken-packages: - hchesslib - hcltest - hcoap + - hcobs - hcom - hcron - hCsound @@ -2109,10 +2168,8 @@ broken-packages: - hdbc-postgresql-hstore - HDBC-postgresql-hstore - hdevtools - - hdf - hdf5 - hDFA - - hdigest - hdis86 - hdiscount - hdm @@ -2121,6 +2178,7 @@ broken-packages: - hdr-histogram - HDRUtils - headergen + - headroom - heap-console - heapsort - heart-core @@ -2128,9 +2186,9 @@ broken-packages: - heckle - heddit - hedgehog-checkers + - hedgehog-gen - hedgehog-generic - hedgehog-golden - - hedgehog-lens - hedgehog-servant - hedis-config - hedis-namespace @@ -2139,10 +2197,11 @@ broken-packages: - hedra - heidi - hein + - heist-aeson - heist-async + - heist-emanote - helisp - helix - - hell - helm - help-esb - hemkay @@ -2157,6 +2216,7 @@ broken-packages: - heterogeneous-list-literals - hetris - heukarya + - hevm - HExcel - hexchat - hexif @@ -2172,12 +2232,11 @@ broken-packages: - hext - hextra - heyefi - - heystone + - heyting-algebras - hF2 - hfann - HFitUI - hfmt - - hfoil - hfov - HFrequencyQueue - hfusion @@ -2190,7 +2249,6 @@ broken-packages: - hGelf - hgeometric - hgeometry-ipe - - hgettext - hgis - hgom - hgopher @@ -2206,6 +2264,7 @@ broken-packages: - hi - hi3status - hichi + - hid - hidden-char - hid-examples - hieraclus @@ -2213,18 +2272,20 @@ broken-packages: - hierarchy - hiernotify - higgledy + - higher-leveldb - higherorder - highjson - highlight-versions - highWaterMark + - hills - himg - hindley-milner - hindley-milner-type-check - - hinotify-conduit - hinquire - hinstaller - hinter - hinterface + - hint-server - hipchat-hs - hipe - Hipmunk @@ -2248,9 +2309,9 @@ broken-packages: - hkt - hlbfgsb - hleap - - hledger-api - hledger-chart - hledger-diff + - hledger-iadd - hledger-irr - hledger-vty - hlibBladeRF @@ -2260,18 +2321,20 @@ broken-packages: - hlogger - HLogger - hlongurl - - hlrdb-core - - hls-exactprint-utils + - hls-brittany-plugin + - hls-haddock-comments-plugin - hls-selection-range-plugin + - hls-splice-plugin - hls-stan-plugin + - hls-tactics-plugin - hlwm + - hly - hmarkup - hmatrix-banded - hmatrix-mmap - hmatrix-nipals - hmatrix-sparse - hmatrix-static - - hmatrix-sundials - hmatrix-svdlibc - hmatrix-syntax - hmatrix-tests @@ -2283,7 +2346,6 @@ broken-packages: - hMollom - hmp3 - Hmpf - - hmpfr - hmumps - hnetcdf - hnn @@ -2304,14 +2366,12 @@ broken-packages: - hogg - hoggl - hois - - hol - hold-em - hole - holmes - homeomorphic - homoiconic - homplexity - - honeycomb - honi - hoobuddy - hood2 @@ -2324,8 +2384,9 @@ broken-packages: - hopencc - hopencl - HOpenCV + - hopenpgp-tools - hopfield - - hoppy-runtime + - hoppy-generator - hops - hoq - horizon @@ -2337,6 +2398,7 @@ broken-packages: - houseman - hp2any-core - hpack-convert + - hpack-dhall - hpapi - hpasteit - HPath @@ -2347,18 +2409,16 @@ broken-packages: - hplaylist - hpodder - hpqtypes - - hprotoc - hps-kmeans - hPushover - hpygments - hpylos - hpyrg - - hq - - HQu - - hquantlib + - hquantlib-time - hquery - hR - hreq-core + - hRESP - h-reversi - hricket - Hricket @@ -2366,27 +2426,19 @@ broken-packages: - hruby - hs2bf - hs2ps - - hsaml2 - hsay - hsbc - hsbencher - hs-brotli - - hsc3-cairo - - hsc3-db - - hsc3-dot - - hsc3-lang - - hsc3-process - - hsc3-rec + - hsc3 - hsc3-rw - hsc3-sf - - hsc3-unsafe - hscaffold - hscamwire - hs-carbon-examples - hscd - - hs-cdb - hscdio - - hschema + - hschema-aeson - hscim - hsclock - hScraper @@ -2406,7 +2458,6 @@ broken-packages: - hsfilt - hs-fltk - hsforce - - hs-functors - hs-gizapp - hsgnutls - hsgnutls-yj @@ -2428,19 +2479,19 @@ broken-packages: - hslogger-reader - hslogger-template - hs-logo + - hslua-examples - hslua-list - hsluv-haskell - hsmagick - - HSmarty - hsmodetweaks - Hsmtlib - hsmtpclient - hsnock - hs-nombre-generator - hsns + - hsnsq - hsntp - hs-openmoji-data - - hs-opentelemetry-instrumentation-hspec - hsoptions - hsoz - hsparql @@ -2457,6 +2508,7 @@ broken-packages: - hspec-snap - hspec-structured-formatter - hspec-tables + - hspec-webdriver - HsPerl5 - hs-pgms - hspkcs11 @@ -2491,26 +2543,24 @@ broken-packages: - hsx - hsXenCtrl - hsyscall - - hsyslog-tcp + - hsyslog-udp - hszephyr - hTalos - - htar - htdp-image - hTensor - htestu - HTicTacToe - htiled - htlset - - html-charset - - html-parse - html-rules - html-tokenizer - htoml - htoml-megaparsec + - hts - htsn - htssets - - http2-client - - http2-grpc-proto-lens + - http2-client-exe + - http2-grpc-types - http-attoparsec - http-client-lens - http-client-request-modifiers @@ -2522,8 +2572,10 @@ broken-packages: - http-dispatch - http-grammar - http-kinder + - http-kit - http-listen - http-monad + - http-pony - http-pony-serve-wai - http-proxy - http-querystring @@ -2549,7 +2601,6 @@ broken-packages: - HUnit-Diff - HUnit-Plus - hunit-rematch - - hunspell-hs - hup - hurl - hurriyet @@ -2559,17 +2610,20 @@ broken-packages: - hVOIDP - hwall-auth-iitk - hw-ci-assist + - hw-dump - hweblib - hwhile - hw-json-demo - - hw-lazy + - hw-json-lens - hworker - hw-playground-linear + - hw-prim-bits + - hw-simd-cli - hwsl2 + - hw-tar - hx - hxmppc - HXQ - - hxt-cache - hxt-pickle-utils - hyakko - hydra-hs @@ -2577,13 +2631,13 @@ broken-packages: - hydrogen-multimap - hylide - hylolib + - hyper - hyperdrive - hyperfunctions - - hypergeomatrix - - hyper-haskell-server - hyperion - hyperloglogplus - hyperscript + - hypertypes - hypher - hyraxAbif - hzulip @@ -2598,17 +2652,19 @@ broken-packages: - icepeak - icfpc2020-galaxy - IcoGrid - - iconv-typed + - iconv - ideas - ide-backend-common - idempotent - identifiers - idiii - idna2008 + - idris - IDynamic - ieee-utils - iexcloud - ifcxt + - iff - if-instance - IFS - ig @@ -2621,10 +2677,10 @@ broken-packages: - ihaskell-parsec - ihaskell-plot - ihaskell-widgets - - ihp-hsx - illuminate - imagemagick - imagepaste + - image-type - imapget - imgur - imj-prelude @@ -2639,7 +2695,8 @@ broken-packages: - imports - impossible - imprint - - incipit + - impure-containers + - inchworm - indentation-core - index-core - indexed-containers @@ -2647,6 +2704,7 @@ broken-packages: - indextype - indices - infernal + - inferno-types - infer-upstream - inf-interval - infix @@ -2655,9 +2713,9 @@ broken-packages: - inilist - ini-qq - initialize + - inj-base - inject-function - - inline-asm - - inline-r + - injections - in-other-words-plugin - inserts - instana-haskell-trace-sdk @@ -2665,11 +2723,11 @@ broken-packages: - instant-generics - instapaper-sender - instinct - - intcode - integer-pure - - intel-aes + - integer-simple - intensional-datatys - interact + - interactive-plot - interleavableGen - interleavableIO - interlude-l @@ -2681,14 +2739,17 @@ broken-packages: - interpolator - interruptible - interval + - interval-algebra + - interval-patterns - interval-tree-clock - IntFormats + - int-interval-map - int-multimap - intrinsic-superclasses + - intro - introduction - - intro-prelude + - inventory - invertible - - invertible-hlist - invertible-syntax - involutive-semigroups - io-capture @@ -2708,11 +2769,11 @@ broken-packages: - iptables-helpers - IPv6DB - Irc + - ircbot - irc-dcc - irc-fun-types - ireal - iri - - iridium - iris - iron-mq - irt @@ -2720,13 +2781,13 @@ broken-packages: - IsNull - iso8601-duration - isobmff - - isomorphism-class - isotope - itcli - itemfield - iteratee - iterative-forward-search - iterIO + - iterm-show - it-has - ivory - ixdopp @@ -2738,11 +2799,13 @@ broken-packages: - JackMiniMix - jacobi-roots - jaeger-flamegraph + - jail - jalla + - jammittools - jarfind - jarify - jason - - java-bridge + - java-adt - javascript-bridge - javav - Javav @@ -2755,15 +2818,18 @@ broken-packages: - jet-stream - Jikka - jinquantities + - jmacro-rpc - jml-web-service - jni - jobqueue - join-api - joinlist - - joint - jonathanscard - jort + - joy-rewrite - jpeg + - jsaddle-clib + - jsaddle-warp - jsaddle-wkwebview - js-good-parts - json2 @@ -2774,12 +2840,13 @@ broken-packages: - json-ast-quickcheck - JSONb - json-builder + - json-bytes-builder - json-encoder - jsonextfilter - json-extra - json-fu - json-litobj - - jsonlogic + - jsonlogic-aeson - jsonnet - json-pointer - json-pointy @@ -2802,6 +2869,7 @@ broken-packages: - judy - juicy-gcode - JuicyPixels-blp + - JuicyPixels-blurhash - JuicyPixels-canvas - JuicyPixels-util - JunkDB @@ -2812,7 +2880,6 @@ broken-packages: - jvm-parser - JYU-Utils - kademlia - - kafka-client - kafka-client-sync - kalman - Kalman @@ -2834,22 +2901,22 @@ broken-packages: - kdesrc-build-extra - kd-tree - keccak + - keenser - keera-hails-reactivevalues - keid-ui-dearimgui - keiretsu - kempe - - kerry - kesha - Ketchup - kewar - keycloak-hs - keyed - - keystore + - keyed-vals - khph - kickass-torrents-dump-parser - kickchan - - ki-unlifted - kleene-list + - kmn-programming - kmonad - kmp-dfa - knots @@ -2861,9 +2928,9 @@ broken-packages: - koofr-client - korea-holidays - kraken - - krank - krapsh - Kriens + - kriti-lang - krpc - KSP - ktx @@ -2876,7 +2943,6 @@ broken-packages: - lagrangian - lambda2js - lambdaBase - - lambdabot-telegram-plugins - lambdabot-utils - lambdabot-xmpp - lambda-bridge @@ -2893,9 +2959,10 @@ broken-packages: - lambda-sampler - lambdatex - lambda-toolbox + - lambdatwit + - Lambdaya - lame - lame-tester - - landlock - language-asn - language-c-comments - language-c-inline @@ -2903,14 +2970,15 @@ broken-packages: - language-csharp - language-dart - language-dockerfile - - language-ecmascript - language-elm + - language-fortran - language-gcl - language-gemini - language-go - language-guess - language-hcl - language-java-classfile + - language-js - language-lua2 - language-lua-qq - language-mixal @@ -2925,12 +2993,14 @@ broken-packages: - language-tl - language-typescript - language-webidl + - laop - LargeCardinalHierarchy - Lastik - latest-npm-version - latex-formulae-image - latex-svg-image - LATS + - launchdarkly-server-sdk - launchpad-control - lawless-concurrent-machines - layers @@ -2940,22 +3010,19 @@ broken-packages: - lazify - lazyarray - lazyboy - - lazy-bracket - lazy-priority-queue - lazyset - LazyVault - l-bfgs-b - LC3 - lcs - - lda + - ldgallery-compiler - ldif - ld-intervals - leaf - leapseconds - learn - Learning - - learning-hmm - - learn-physics-examples - leetify - lendingclub - lens-datetime @@ -2966,12 +3033,14 @@ broken-packages: - lens-process - lensref - lens-simple + - lens-tell - lens-text-encoding - lens-th-rewrite - lens-time - lens-tutorial - lens-typelevel - lens-xml + - lenz-template - less-arbitrary - Level0 - level-monad @@ -2990,13 +3059,9 @@ broken-packages: - libltdl - liboath-hs - liboleg - - libpafe - libpq - librandomorg - - librarian - - libsecp256k1 - libsystemd-daemon - - libsystemd-journal - libtagc - libxls - libxlsxwriter-hs @@ -3008,7 +3073,6 @@ broken-packages: - lifetimes - lifted-protolude - lifter - - lifx-lan - ligature - light - lilypond @@ -3029,14 +3093,16 @@ broken-packages: - linkedhashmap - linked-list-with-iterator - linklater + - linnet - linode - linode-v4 - linux-blkid - linux-cgroup + - linux-evdev - linux-kmod - linux-perf + - linux-xattr - linx-gateway - - lion - lipsum-gen - liquid - liquidhaskell-cabal @@ -3045,8 +3111,8 @@ broken-packages: - listlike-instances - list-mux - list-prompt - - list-remote-forwards - list-t-http-client + - list-t-libcurl - list-tries - list-t-text - list-zip-def @@ -3063,31 +3129,31 @@ broken-packages: - llvm-hs - llvm-ht - llvm-pretty - - lmdb-high-level + - lmdb-simple - lmonad + - lnurl - load-balancing - load-font - local-address - located - located-monad-logger - loch - - loc-test - log2json + - log-base + - log-effect - logentries - logger - logging-effect-extra-file - logging-effect-extra-handler - Logic - logicst - - logict-state + - logict-sequence - logplex-parse - log-warper - lojbanParser - lojbanXiragan - - lol - lol-calculus - longboi - - longshot - lookup-tables - loopbreaker - loop-dsl @@ -3098,20 +3164,21 @@ broken-packages: - lorem - loris - loshadka + - louis - lowgl - - lp-diagrams + - lp-diagrams-svg - LRU - lrucaching - lscabal - L-seed - lsfrom - - lti13 - ltiv1p1 - ltk - LTS - lua-bc - luautils - - lucid2 + - lucid2-htmx + - lucid-aria - lucid-hyperscript - luis-client - luka @@ -3142,10 +3209,9 @@ broken-packages: - macos-corelibs - macrm - madlang - - mad-props - mage - - MagicHaskeller - magic-tyfams + - magma - mailchimp - mailchimp-subscribe - makedo @@ -3156,10 +3222,10 @@ broken-packages: - mandulia - mangopay - mapalgebra - - map-classes - map-exts - Mapping - mappy + - map-reduce-folds - MapWith - markdown-kate - marked-pretty @@ -3186,9 +3252,11 @@ broken-packages: - maybench - MaybeT - MaybeT-monads-tf + - MaybeT-transformers - MazesOfMonad - MBot - mbox-tools + - mbox-utility - mbug - mcl - mcm @@ -3206,12 +3274,12 @@ broken-packages: - Mecha - mechs - Mechs - - medea - mediabus - mediawiki - medium-sdk-haskell - meep - megalisp + - melf - mellon-core - melody - membrain @@ -3221,10 +3289,12 @@ broken-packages: - meminfo - memoization-utils - memo-ptr + - memorable-bits - memorypool - memo-sqlite - menoh - menshen + - mercury-api - mergeful-persistent - mergeless-persistent - messagepack-rpc @@ -3243,6 +3313,8 @@ broken-packages: - MHask - mi - miconix-test + - microbase + - microformats2-parser - microgroove - microlens-each - micrologger @@ -3250,9 +3322,8 @@ broken-packages: - microsoft-translator - mida - midi-simple - - midisurface - midi-utils - - migrant-core + - migrant-postgresql-simple - mikmod - mikrokosmos - miku @@ -3269,6 +3340,7 @@ broken-packages: - minst-idx - mios - MIP + - mirror-tweet - mismi-s3-core - miso-action-logger - miso-examples @@ -3280,12 +3352,12 @@ broken-packages: - ml-w - mm2 - mmsyn2 - - mmsyn3 - mmtf - mmtl - Mobile-Legends-Hack-Cheats - - mockazo - mock-httpd + - modbus-tcp + - model - modelicaparser - modular-prelude - module-management @@ -3299,15 +3371,16 @@ broken-packages: - monadacme - monad-atom - monad-atom-simple - - monad-bayes - monad-branch - - MonadCatchIO-transformers + - MonadCatchIO-mtl + - MonadCatchIO-transformers-foreign - monad-choice - MonadCompose + - monad-control-aligned + - monadcryptorandom - monad-fork - - monad-http - monadiccp - - monad-interleave + - monadic-recursion-schemes - monad-introspect - Monadius - monad-levels @@ -3316,6 +3389,7 @@ broken-packages: - monadloc-pp - monad-log - monadlog + - monad-logger-syslog - monad-lrs - monad-mersenne-random - monad-mock @@ -3325,8 +3399,8 @@ broken-packages: - monad-persist - monadplus - monad-ran + - MonadRandomLazy - monad-recorder - - monads-fd - MonadStack - monad-statevar - monad-ste @@ -3334,9 +3408,9 @@ broken-packages: - monad-task - monad-throw-exit - monad-timing + - monad-tree - monad-tx - monad-unify - - monad-unlift - monad-wrap - Monatron - mondo @@ -3349,36 +3423,32 @@ broken-packages: - monoid-owns - monoidplus - monoids - - monomer-hagrid - monopati - monus - monzo + - moo-nad - morfette - morfeusz - - morloc - - morpheus-graphql-core + - morpheus-graphql-cli - morphisms-functors - morphisms-objects - morte - - mosaico-lib - - motor + - mortred + - motor-reflection - mount - movie-monad - - mpeff - mpppc - mpris - mpvguihs - mqtt - mqtt-hs - - mr-env - mrifk - mrm - ms - msgpack - - msgpack-binary - - msgpack-persist + - msgpack-types - msh - - msi-kb-backlit + - mssql-simple - MTGBuilder - mtgoxapi - mtl-c @@ -3391,7 +3461,6 @@ broken-packages: - MuCheck - mud - mudbath - - muesli - mulang - multext-east-msd - multiaddr @@ -3401,18 +3470,19 @@ broken-packages: - multipass - multipath - multiplate-simplified - - multipool-persistent-postgresql + - multipool - multirec - - multivariant + - multistate - Munkres-simple - muon + - murmur - mu-schema - musicScroll - music-util - musicxml - mustache2hs - mustache-haskell - - mutable-lens + - mutable - mvc - mxnet - mxnet-nnvm @@ -3425,10 +3495,11 @@ broken-packages: - mysql-simple-quasi - mystem - my-test-docs - - mywatch + - mywork - myxine-client - mzv - n2o-protocols + - NaCl - nagios-plugin-ekg - named-binary-tag - named-lock @@ -3436,6 +3507,7 @@ broken-packages: - named-sop - namelist - nanoAgda + - nano-cryptr - nanocurses - nano-hmac - nano-md5 @@ -3454,7 +3526,6 @@ broken-packages: - nats-client - nat-sized-numbers - natural - - NaturalLanguageAlphabets - NaturalSort - naver-translate - nbt @@ -3467,6 +3538,7 @@ broken-packages: - neither - neither-data - neko-lib + - neko-obfs - Neks - neptune-backend - nero @@ -3475,13 +3547,11 @@ broken-packages: - nestedmap - nested-sequence - netclock - - netcore - netease-fm - netrium - NetSNMP - netspec - net-spider - - nettle-openflow - netwire-input-javascript - netwire-vinylglfw-examples - network-address @@ -3493,9 +3563,10 @@ broken-packages: - network-bytestring - network-carbon - network-dbus - - network-dns - networked-game - network-house + - network-manager-tui + - network-messagepack-rpc-websocket - network-metrics - network-msg - network-msgpack-rpc @@ -3521,13 +3592,16 @@ broken-packages: - next-ref - nextstep-plist - NGrams + - ngrams-loader - ngx-export-log - niagra - nibblestring - nice-html - nicovideo-translator + - nist-beacon - nitro - nix-delegate + - nixdu - nix-eval - nix-freeze-tree - nixfromnpm @@ -3543,7 +3617,7 @@ broken-packages: - nofib-analyse - nofib-analyze - noise - - nom + - noli - NonEmpty - non-empty-containers - nonempty-lift @@ -3551,7 +3625,7 @@ broken-packages: - noodle - no-role-annots - notcpp - - not-gloss-examples + - notmuch-haskell - NoTrace - notzero - np-linear @@ -3563,25 +3637,26 @@ broken-packages: - nullary - null-canvas - nullpipe - - numbered-semigroups - NumberSieves - NumberTheory - - numerals-base - - numeric-ode - numeric-qq - numeric-ranges - numhask-free - numhask-histogram - numhask-prelude + - numtype + - numtype-tf - Nutri - nvim-hs-ghcid + - NXT - NXTDSL - nyan-interpolation-core - nylas - nyx-game + - oanda-rest-api - oasis-xrd - - oauth2-jwt-bearer - oauthenticated + - obd - Object - ObjectIO - ocaml-export @@ -3590,8 +3665,13 @@ broken-packages: - oden-go-packages - oeis2 - OGL + - ogma-language-c + - ogma-language-cocospec + - ogma-language-smv - ogmarkup + - ohloh-hs - oi + - okapi - old-version - om-actor - omaketex @@ -3601,13 +3681,13 @@ broken-packages: - Omega - om-elm - om-fail - - om-fork - - om-http - om-http-logging - omnifmt + - om-plugin-imports + - om-show + - om-time - on-a-horse - onama - - ONC-RPC - on-demand-ssh-tunnel - oneormore - onpartitions @@ -3618,9 +3698,11 @@ broken-packages: - opaleye-trans - open-adt - OpenAFP - - openai-servant + - openai-hs + - openapi3-code-generator - openapi-petstore - openapi-typed + - opencc - opench-meteo - OpenCL - OpenCLRaw @@ -3636,13 +3718,12 @@ broken-packages: - open-haddock - openid-connect - open-pandoc - - openpgp - open-signals - opensoundcontrol-ht - openssh-protocol + - opentelemetry-extra - opentelemetry-http-client - opentheory-char - - opentok - opentype - open-typerep - OpenVGRaw @@ -3657,18 +3738,18 @@ broken-packages: - options-time - optparse-applicative-simple - optparse-helper - - orbits + - optstream - orc - orchestrate - OrchestrateDB - ordered - order-statistics - - ordinal - Ordinary - ordrea - oref - organize-imports - orgmode + - orgmode-parse - origami - orion-hs - orizentic @@ -3677,12 +3758,15 @@ broken-packages: - oscpacking - oset - Oslo-Vectize + - OSM - osm-conduit - oso2pdf - osx-ar - ot - OTP - ottparse-pretty + - overeasy + - overload - overloaded - overloaded-records - overture @@ -3697,6 +3781,7 @@ broken-packages: - packedstring - packer-messagepack - packman + - packstream - packunused - pacman-memcache - padic @@ -3740,8 +3825,10 @@ broken-packages: - papillon - pappy - paragon + - Parallel-Arrows-Definition - parallel-tasks - parameterized-data + - parameterized-utils - paranoia - parco - parcom-lib @@ -3752,13 +3839,13 @@ broken-packages: - PArrows - Parry - parse - - parseargs - parsec2 - parsec3 - parsec-free - parsec-parsers - parsec-pratt - parseerror-eq + - parse-gcstats - parsely - parser241 - parser-combinators-tests @@ -3767,10 +3854,10 @@ broken-packages: - parsers-megaparsec - parser-unbiased-choice-monad-embedding - parsimony - - parsley-core + - parsnip - partage + - partial-lens - partial-records - - partial-semigroup-hedgehog - partly - passage - passman @@ -3780,12 +3867,14 @@ broken-packages: - pasta - pastis - pasty + - patat - patches-vector - Pathfinder - pathfindingcore - PathTree - patrol - patronscraper + - pattern-trie - paypal-adaptive-hoops - paypal-api - paypal-rest-client @@ -3799,9 +3888,8 @@ broken-packages: - PCLT - pcre2 - pcre-light-extra - - pdfname + - pdfinfo - pdf-slave-template - - pdfsplit - pdf-toolbox-viewer - pdftotext - pdynload @@ -3812,10 +3900,10 @@ broken-packages: - peggy - pencil - penntreebank-megaparsec - - penrose - percent-encoder - perceptron - peregrin + - perf - PerfectHash - perfect-vector-shuffle - perhaps @@ -3832,11 +3920,11 @@ broken-packages: - persistent-generic - persistent-mongoDB - persistent-odbc - - persistent-protobuf - persistent-ratelimit - persistent-stm - persistent-template-classy - persistent-zookeeper + - persist-state - persona - pesca - pez @@ -3846,6 +3934,7 @@ broken-packages: - pg-harness - pg-harness-server - pg-recorder + - pgsql-simple - pg-store - pgstream - pg-transact @@ -3873,23 +3962,21 @@ broken-packages: - pi-forall - pig - pi-hoole + - pi-lcd + - pinboard - pinch-gen - pinchot - pine - Pipe - pipes-async - pipes-bgzf - - pipes-break - pipes-brotli - - pipes-bzip - pipes-category - - pipes-cborg - pipes-cereal - pipes-core - pipes-errors - pipes-interleave - pipes-io - - pipes-network - pipes-protolude - pipes-rt - pipes-s3 @@ -3898,13 +3985,13 @@ broken-packages: - pipes-transduce - pipes-vector - pipes-zeromq4 - - pipes-zlib - Piso - pit - pivotal-tracker - pixela - pixelated-avatar-generator - pixel-printer + - pixiv - pkcs10 - pkcs7 - pkggraph @@ -3919,7 +4006,6 @@ broken-packages: - platinum-parsing - PlayingCards - playlists - - plex - plist - plist-buddy - plivo @@ -3928,6 +4014,8 @@ broken-packages: - plot-gtk3 - plot-gtk-ui - plot-lab + - plots + - plow-log - plugins - plugins-multistage - plumbers @@ -3941,8 +4029,9 @@ broken-packages: - pointfree-fancy - pointful - pointless-haskell + - poke - pokemon-go-protobuf-types - - poker + - poker-base - poker-eval - pokitdok - polar-configfile @@ -3954,14 +4043,18 @@ broken-packages: - poly-control - polydata-core - polynom + - polynomial - polysemy-check - polysemy-keyed-state - polysemy-kvstore-jsonfile - - polysemy-log-co - - polysemy-managed + - polysemy-methodology-co-log - polysemy-mocks + - polysemy-path - polysemy-readline - - polysemy-scoped-fs + - polysemy-req + - polysemy-socket + - polysemy-video + - polysemy-vinyl - polytypeable - pomaps - pomohoro @@ -3971,36 +4064,36 @@ broken-packages: - pool - pool-conduit - pop3-client - - popkey - poppler + - porpoise - portager - porte - PortFusion - - portray-pretty - - portray-prettyprinter - posit - positron - posix-acl - posix-api - posix-realtime - posix-waitpid - - posplyu - postcodes - postgres-embedded - PostgreSQL + - postgresql-common + - postgresql-cube - postgresql-lo-stream - postgresql-ltree - postgresql-named + - postgresql-orm - postgresql-query + - postgresql-replicant - postgresql-resilient - postgresql-simple-bind + - postgresql-simple-migration - postgresql-simple-named - postgresql-simple-sop - - postgresql-transactional + - postgresql-tx-monad-logger - postgresql-tx-simple - - postgresql-tx-squeal - postgresql-typed-lifted - - postgrest - postgres-tmp - postgrest-ws - postgres-websockets @@ -4009,6 +4102,7 @@ broken-packages: - postmaster - potato-tool - potoki-core + - powerdns - powermate - powerpc - powerqueue-levelmem @@ -4034,6 +4128,7 @@ broken-packages: - presburger - present - press + - pretty-compact - pretty-ghci - pretty-ncols - prettyprinter-vty @@ -4043,17 +4138,17 @@ broken-packages: - prime - primes-type - prim-instances + - PrimitiveArray - PrimitiveArray-Pretty - primitive-atomic - - primitive-containers - primitive-convenience - primitive-foreign - primitive-indexed - primitive-maybe - primitive-simd + - primitive-sort - primitive-stablename - prim-ref - - prim-spoon - pringletons - printcess - print-debugger @@ -4080,9 +4175,13 @@ broken-packages: - progress-meter - progress-reporting - proj4-hs-bindings + - project-forge - projectile + - project-m36 - prolens - prolog + - prometheus-effect + - prometheus-proc - promise - pronounce - proof-combinators @@ -4092,7 +4191,10 @@ broken-packages: - property-list - prosidy - prosper + - proteaaudio + - proteaaudio-sdl - protocol + - protocol-buffers - protocol-buffers-fork - proto-lens-combinators - protolude-lifted @@ -4102,15 +4204,17 @@ broken-packages: - provenience - proxy-kindness - proxy-mapping + - prune-juice - psc-ide - pseudo-trie + - psi - psx - PTQ + - pub - publicsuffix - publicsuffixlistcreate - publish - pubnub - - pubsub - pugixml - pugs-DrIFT - pugs-HsSyck @@ -4118,7 +4222,8 @@ broken-packages: - Pup-Events-Server - pure-io - pure-priority-queue - - purescript + - purescript-ast + - purescript-cst - purescript-tsd-gen - pure-zlib - pushbullet @@ -4129,12 +4234,10 @@ broken-packages: - push-notifications - putlenses - puzzle-draw - - pvector - pyffi - pyfi - python-pickle - q4c12-twofinger - - qbe - qc-oi-testgenerator - qd - qed @@ -4143,29 +4246,30 @@ broken-packages: - QIO - QLearn - qlinear - - qnap-decrypt + - qrcode - qr-imager - qsem - qt - QuadEdge - QuadTree + - qualified-imports-plugin - quandl-api - - quantfin - quantification - quantum-arrow - quarantimer - - qudb - quenya-verb - querystring-pickle - questioner - quibble-core - QuickAnnotate + - quickbooks - quickcheck-arbitrary-template - - quickcheck-lockstep - quickcheck-property-comb - quickcheck-property-monad - quickcheck-rematch - quickcheck-report + - QuickCheckVariant + - quickcheck-webdriver - quickjs-hs - QuickPlot - quickpull @@ -4185,21 +4289,22 @@ broken-packages: - radium - radium-formula-parser - radix + - radix-tree - rados-haskell - raft - rakhana - rakuten - ralist - raml - - randfile - rando - random-access-list - random-derive - RandomDotOrg - random-eff - Randometer - - random-extras + - random-source - random-stream + - random-string - rand-vars - Range - rangemin @@ -4215,7 +4320,6 @@ broken-packages: - raz - rbst - rclient - - rdf - react-flux - react-haskell - reaction-logic @@ -4230,6 +4334,7 @@ broken-packages: - readability - read-bounded - read-ctags + - reader-soup - read-io - readline-statevar - readme-lhs @@ -4240,11 +4345,9 @@ broken-packages: - reason-export - record - record-encode - - record-impl - records + - records-sop - record-wrangler - - recursion-schemes-ext - - recursion-schemes-ix - recursors - red-black-record - redis-hs @@ -4257,9 +4360,11 @@ broken-packages: - refcount - Referees - references + - ref-extras - refined-http-api-data - refined-with - reflection-extras + - reflex-backend-socket - reflex-basic-host - reflex-dom-ace - reflex-dom-contrib @@ -4269,10 +4374,10 @@ broken-packages: - reflex-dom-svg - reflex-external-ref - reflex-fsnotify - - reflex-gadt-api - reflex-gi-gtk - reflex-gloss - reflex-jsx + - reflex-libtelnet - reflex-orphans - reflex-sdl2 - reflex-test-host @@ -4282,6 +4387,7 @@ broken-packages: - reformat - refresht - refty + - refurb - reg-alloc - regex-dfa - regexdot @@ -4290,7 +4396,6 @@ broken-packages: - regex-posix-unittest - regexpr-symbolic - regexqq - - regex-rure - regex-tdfa-pipes - regex-tdfa-quasiquoter - regex-tdfa-rc @@ -4309,7 +4414,7 @@ broken-packages: - reified-records - reify - relacion - - relapse + - relation - relevant-time - reload - remark @@ -4336,8 +4441,9 @@ broken-packages: - req-conduit - request - request-monad + - require - req-url-extra - - reserve + - rescue - reservoir - resolve - resolve-trivial-conflicts @@ -4350,9 +4456,9 @@ broken-packages: - resumable-exceptions - rethinkdb - rethinkdb-client-driver - - rethinkdb-wereHamster - retryer - reverse-geocoding + - reverse-list - reversi - ReviewBoard - rewrite-inspector @@ -4360,10 +4466,11 @@ broken-packages: - rfc-prelude - r-glpk-phonetic-languages-ukrainian-durations - rhbzquery + - rhine - riak - riak-protobuf-lens - - rib - ribbit + - rib-core - RichConditional - ridley - riemann @@ -4377,20 +4484,20 @@ broken-packages: - rivers - rivet-migration - rivet-simple-deploy - - RJson - Rlang-QQ - - rle - rlglue - RLP - rl-satton - - RNAdraw - robin - robots-txt - roc-cluster + - roc-id + - roguestar - roku-api - rollbar-client - rollbar-hs - roller + - roman-numerals - ron - rope - rosebud @@ -4398,6 +4505,7 @@ broken-packages: - rosmsg - rosso - rotating-log + - rounded - rounding - roundtrip-aeson - rowrecord @@ -4412,6 +4520,7 @@ broken-packages: - RtMidi - rtnetlink - rtorrent-rpc + - rtorrent-state - rts-loader - ruby-marshal - ruby-qq @@ -4419,6 +4528,7 @@ broken-packages: - ruin - runhs - runmany + - runtime-instances - rustls - rws - RxHaskell @@ -4431,15 +4541,18 @@ broken-packages: - safe-freeze - safe-globals - safeint + - safeio - safe-lazy-io - safe-length + - safe-money-xmlbf - safepath - safe-printf - saferoute - safe-tensor + - safe-wild-cards - sajson - sakuraio-platform - - salak-toml + - salak - Salsa - salvia-protocol - sandlib @@ -4452,14 +4565,14 @@ broken-packages: - satyros - savage - sax - - sbvPlugin + - sbv - sc2-proto - scale - scaleimage - scalendar + - s-cargot-letbind - scc - - scgi - - schedule + - schedevr - schedule-planner - schedyield - schemas @@ -4482,6 +4595,7 @@ broken-packages: - ScratchFs - script-monad - scrobble + - scroll-list - scrz - scythe - scyther-proof @@ -4489,11 +4603,10 @@ broken-packages: - sdl2-cairo-image - sdl2-compositor - sdl2-fps - - SDL-mpeg + - sdp - sdr - seacat - seakale - - search - sec - secdh - seclib @@ -4501,10 +4614,12 @@ broken-packages: - secp256k1 - secp256k1-legacy - secret-santa + - SecureHash-SHA3 + - secure-memory - secure-sockets - secureUDP - SegmentTree - - selda-json + - selda-postgresql - selectors - selenium - selinux @@ -4515,15 +4630,17 @@ broken-packages: - Semigroup - semigroupoids-syntax - semigroups-actions + - semilattices - sendgrid-haskell - sendgrid-v3 - sensu-run - sentry + - seonbi - separated - SeqAlign - sequent-core + - sequential-index - serialize-instances - - serialport - serokell-util - servant-aeson-specs - servant-auth-cookie @@ -4536,20 +4653,22 @@ broken-packages: - servant-docs-simple - servant-elm - servant-errors + - servant-event-stream - servant-gdp - servant-generate - servant-generic - servant-github - servant-github-webhook - - servant-haxl-client - servant-hmac-auth - servant-htmx + - servant-http2-client + - servant-iCalendar + - servant-jquery - servant-kotlin - servant-mock - servant-namedargs - servant-nix - servant-pandoc - - servant-polysemy - servant-pool - servant-proto-lens - servant-purescript @@ -4563,14 +4682,17 @@ broken-packages: - servant-stache - servant-static-th - servant-streaming - - servant-streamly - - servant-util + - servant-tracing + - servant-typed-error - servant-wasm + - servant-xml - servant-yaml - servant-zeppelin - server-generic + - serversession-backend-acid-state - serversession-backend-persistent - services + - serviette - ses-html-snaplet - SessionLogger - sessions @@ -4583,6 +4705,7 @@ broken-packages: - sexp - sext - SFML + - sfml-audio - sfmt - sfnt2woff - SG @@ -4591,18 +4714,14 @@ broken-packages: - sh2md - shade - shadower - - shady-gen - - shake-cabal - shake-cabal-build - shake-dhall - shake-extras - shake-minify - - shake-pack - shake-path - shake-persist - shakespeare-babel - shakespeare-sass - - shapes - shared-buffer - shared-fields - sha-streams @@ -4616,12 +4735,13 @@ broken-packages: - shivers-cfg - shoap - shopify + - shortbytestring - shortcut-links - shorten-strings - short-vec - show-prettyprint - - Shpadoinkle-backend-snabbdom - Shpadoinkle-console + - Shpadoinkle-debug - Shpadoinkle-isreal - shwifty - sifflet @@ -4629,7 +4749,6 @@ broken-packages: - signable - signable-haskell-protoc - signed-multiset - - significant-figures - simd - simfin - simple-actors @@ -4641,7 +4760,6 @@ broken-packages: - simpleconfig - simple-css - simple-download - - simple-effects - simple-eval - simple-form - simple-genetic-algorithm @@ -4649,6 +4767,7 @@ broken-packages: - simple-index - simpleirc - simple-log + - simple-logging - simple-money - simple-neural-networks - simplenote @@ -4668,12 +4787,14 @@ broken-packages: - simplexmq - simple-zipper - simplistic-generics + - singlethongs - singleton-dict - singleton-typelits - single-tuple - singnal - singular-factory - sink + - siphash - sitepipe - sixfiguregroup - sized-grid @@ -4685,24 +4806,25 @@ broken-packages: - skeletal-set - skell - skemmtun + - skews - skulk - skylighting-extensions - - skylighting-format-ansi + - skylighting-lucid - skype4hs - slack - slack-api - slack-notify-haskell - slack-verify - - slack-web - - slave-thread - sliceofpy - - slick + - slidemews - Slides - slim - sloane - sloth - slot-lambda - slug + - slugger + - slugify - smallarray - small-bytearray-builder - smallcaps @@ -4713,6 +4835,7 @@ broken-packages: - smartcheck - smartconstructor - smartGroup + - smash - sme - smerdyakov - smiles @@ -4721,6 +4844,7 @@ broken-packages: - smt-lib - SmtLib - smtlib2 + - smtlib-backends - SMTPClient - smtp-mail-ng - smtps-gmail @@ -4730,50 +4854,52 @@ broken-packages: - snake - snake-game - snap-accept - - snap-blaze-clay + - snap-auth-cli - snap-configuration-utilities - snap-error-collector - snap-language - snaplet-acid-state - snaplet-amqp + - snaplet-auth-acid + - snaplet-coffee - snaplet-css-min - snaplet-environments - snaplet-hslogger - snaplet-influxdb - snaplet-mandrill - snaplet-mongodb-minimalistic + - snaplet-mysql-simple - snaplet-postgresql-simple + - snaplet-recaptcha - snaplet-redis - snaplet-sass - snaplet-scoped-session - snaplet-ses-html - - snaplet-sqlite-simple + - snaplet-sqlite-simple-jwt-auth - snaplet-typed-sessions + - snap-loader-dynamic - snap-predicates - - snappy-conduit + - snappy - snap-routes - snap-stream - snap-testing + - snap-utils - snap-web-routes - SNet - snipcheck - snorkels - - snowchecked - snowtify - socket-activation - socketed - socketio - - sockets-and-pipes - socket-sctp - - socketson - socket-unix - sodium - soegtk - softfloat-hs + - solar - solga - - sonic-visualiser - Sonnex - - SoOSiM - sorted - sorting - sorty @@ -4789,7 +4915,6 @@ broken-packages: - sparsecheck - sparse-lin-alg - sparse-tensor - - spartacon - special-functors - special-keys - spectacle @@ -4800,7 +4925,7 @@ broken-packages: - spir-v - splay - splaytree - - splines + - splint - split-morphism - splitter - Spock-api-ghcjs @@ -4809,17 +4934,16 @@ broken-packages: - spoty - Sprig - spritz - - sproxy - - sproxy-web - spsa - spy - sqlcipher - sqlite + - sqlite-easy - sqlite-simple-errors - sql-simple - sqlvalue-list - srcinst - - sr-extra + - srt-dhall - sscan - ssh - ssh-tunnel @@ -4835,13 +4959,14 @@ broken-packages: - stackage-to-hackage - stackage-types - stack-bump + - stackcollapse-ghc - stack-fix - - stack-hpc-coveralls - stack-lib - stack-prism - stack-run - stack-type - stack-wrapper + - staged-gg - standalone-derive-topdown - standalone-haddock - starling @@ -4867,7 +4992,6 @@ broken-packages: - stdf - stdio - steambrowser - - steeloverseer - stego-uuid - stemmer - stemmer-german @@ -4876,12 +5000,15 @@ broken-packages: - STL - stm-chunked-queues - stm-firehose + - stm-incremental - stm-promise - stm-stats - stochastic - Stomp + - stooq-api - storable - storable-static-array + - storablevector - stp - str - Strafunski-ATermLib @@ -4891,7 +5018,6 @@ broken-packages: - stratux-types - stream - streamdeck - - streamed - stream-fusion - streaming-benchmarks - streaming-brotli @@ -4905,16 +5031,20 @@ broken-packages: - streaming-png - streaming-postgresql-simple - streaming-sort - - streaming-utils + - streamly-archive - streamly-binary + - streamly-bytestring - streamly-cassava - streamly-examples + - streamly-lmdb - streamly-lz4 - streamly-process - stream-monad - streamproc + - strelka-core - StrictBench - StrictCheck + - strict-containers - strict-ghc-plugin - strictly - strict-tuple-lens @@ -4923,12 +5053,14 @@ broken-packages: - string-isos - stringlike - string-quote + - strings - stringtable-atom - stripe - stripe-core - - stripe-servant - - strongweak + - stripe-hs + - strong-path - structural-traversal + - structured-haskell-mode - structures - stt - stunclient @@ -4936,7 +5068,7 @@ broken-packages: - stylized - subG-instances - subleq-toolchain - - sublists + - submark - subsample - sub-state - subwordgraph @@ -4946,7 +5078,10 @@ broken-packages: - sugar - sugarhaskell - suitable + - summer - summoner + - sump + - sum-type-boilerplate - sunlight - sunroof-compiler - superbubbles @@ -4958,14 +5093,15 @@ broken-packages: - supervisor - supervisors - supplemented - - supply-chain-core - surjective + - sv2v - sv-core - SVD2HS - svfactor - svg-builder-fork - svg-icons - SvgIcons + - svgsym - svgutils - svm-light-utils - svm-simple @@ -4978,17 +5114,15 @@ broken-packages: - swift-lda - swiss - swiss-ephemeris - - SWMMoutGetMB - sws - syb-extras - - SybWidget - syb-with-class-instances-text + - sydtest - syfco - sym - symantic - symantic-cli - symantic-http-client - - symantic-http-pipes - symantic-parser - symantic-xml - symbolic-link @@ -4998,7 +5132,6 @@ broken-packages: - sync-mht - syntax-trees - syntax-trees-fork-bairyn - - synthesizer - Sysmon - system-canonicalpath - system-command @@ -5011,7 +5144,6 @@ broken-packages: - system-test - t3-server - table - - tableaux - tables - Tables - tablestorage @@ -5020,6 +5152,7 @@ broken-packages: - tabloid - tabs - tag-bits + - tagchup - tagged-exception-core - tagged-timers - taggy-lens @@ -5037,22 +5170,25 @@ broken-packages: - tamarin-prover-utils - Tape - tapioca + - taskell - TaskMonad - tasty-auto - tasty-autocollect - tasty-fail-fast - tasty-grading-system - tasty-hedgehog-coverage + - tasty-json - tasty-mgolden - tasty-stats - tasty-test-vector - TastyTLT - TBC - TBit - - tcache-AWS + - TCache - tcod-haskell - tcp - tcp-streams-openssl + - tdd-util - tdigest-Chart - tdoc - tds @@ -5060,6 +5196,7 @@ broken-packages: - technique - teeth - tehepero + - telega - telegram - telegram-api - telegram-types @@ -5075,19 +5212,15 @@ broken-packages: - template-toolkit - template-yj - tempodb - - temporal-csound - tempus - ten - tensor - tensorflow - tensorflow-opgen - tensor-safe - - termbox-banana - termbox-bindings - - termbox-tea - termination-combinators - termplot - - term-rewriting - terntup - tersmu - tesla @@ -5114,24 +5247,23 @@ broken-packages: - text-and-plots - text-ascii - text-builder-linear - - text-compression - text-containers - text-display - text-format-heavy - text-generic-pretty - text-icu-normalized + - text-icu-translit - text-lens - - text-lips - text-markup - text-normal - textocat-api - text-offset - text-position - - text-region - text-register-machine - text-time - text-trie - textual + - text-utf7 - text-utf8 - text-xml-qq - text-zipper-monad @@ -5157,10 +5289,9 @@ broken-packages: - thorn - th-pprint - threadmanager - - thread-supervisor + - threadscope - threepenny-editors - threepenny-gui-contextmenu - - threepenny-gui-flexbox - thrift - Thrift - throttled-io-loop @@ -5170,17 +5301,20 @@ broken-packages: - th-tc - th-to-exp - th-traced + - thumbnail - thumbnail-plus - - thyme - tianbar + - ticket-management - TicTacToe - tictactoe3d - tidal-midi + - tidal-serial - tidal-vis - tie-knot - tiempo - - tiger + - TigerHash - tightrope + - tikzsd - timecalc - time-extras - time-machine @@ -5189,6 +5323,7 @@ broken-packages: - timeout-with-results - timeparsers - TimePiece + - timeplot - time-qq - time-quote - time-recurrence @@ -5197,9 +5332,10 @@ broken-packages: - timeutils - time-w3c - timezone-detect - - tintin - tinyid - TinyLaunchbury + - tinylog + - tinyMesh - tiny-scheduler - tinytemplate - TinyURL @@ -5211,11 +5347,6 @@ broken-packages: - tkhs - tkyprof - tmp-proc-example - - tmp-proc-postgres - - tmp-proc-rabbitmq - - tmp-proc-redis - - tmp-proc-zipkin - - todo - tofromxml - to-haskell - token-bucket @@ -5227,18 +5358,18 @@ broken-packages: - tokstyle - tokyocabinet-haskell - tokyotyrant-haskell - - tomato-rubato-openal - toml - toml-parser - - toml-reader-parse - tonalude - tonaparser - toodles - Top + - topkata - torch - TORCS - to-string-class - TotalMap + - total-maps - touched - Tournament - toxiproxy-haskell @@ -5256,6 +5387,7 @@ broken-packages: - traildb - transactional-events - TransformeR + - transformers-bifunctors - transformers-compose - transformers-lift - transformers-runnable @@ -5271,6 +5403,7 @@ broken-packages: - treap - treemap - treemap-html + - tree-monad - tree-render-text - TreeStructures - tree-traversals @@ -5279,6 +5412,7 @@ broken-packages: - TrendGraph - trhsx - trial-tomland + - tries - trigger - trim - tripLL @@ -5286,7 +5420,6 @@ broken-packages: - tropical - tropical-geometry - true-name - - trust-chain - tsession - tslib - tsparse @@ -5294,22 +5427,24 @@ broken-packages: - tsuntsun - tsvsql - ttask + - ttl-hashtables - ttn-client - tttool - tubes - tuntap + - tuple-append - tuple-gen - tuple-hlist - tupleinstances - tuple-lenses - tuple-morph - - turingMachine - turing-machines - turing-music - turtle-options - tweak - twentefp-websockets - twfy-api-client + - twhs - twilio - twiml - twine @@ -5318,38 +5453,37 @@ broken-packages: - twitchapi - twitter - twitter-feed - - twitter-types - tx - txtblk - TYB - tyfam-witnesses - typalyze - - typeable-mock - typeable-th - - typecheck-plugin-nat-simple - type-combinators + - TypeCompose - typed-digits - typed-encoding - - typedflow - typedquery - typed-time - typed-wire - type-eq + - type-errors-pretty - typehash - type-indexed-queues - type-int - type-interpreter - type-level-bst - - type-level-kv-list-esqueleto - type-level-natural-number-induction - type-level-natural-number-operations + - typelevel-rewrite-rules + - type-level-sets - typelevel-tensor - type-list + - typelits-witnesses - type-of-html-static - typeparams - type-prelude - - type-reflection - - type-rig + - type-safe-avl - types-compat - type-settheory - type-spine @@ -5371,21 +5505,21 @@ broken-packages: - uhttpc - ui-command - unamb-custom + - unbeliever - unbounded-delays-units + - unboxed - unboxed-containers - unboxed-references - unbreak - - uncertain - unescaping-print - unfix-binders - - unfoldable - unicode-data-names - unicode-data-scripts - unicode-data-security + - unicode-general-category - unicode-prelude - unicode-symbols - unicode-tricks - - union - union-map - uniprot-kb - uniqueid @@ -5404,8 +5538,8 @@ broken-packages: - unix-handle - unix-process-conduit - unix-recursive + - unlift - unlifted-list - - unliftio-messagebox - unlift-stm - unm-hip - unordered-containers-rematch @@ -5416,6 +5550,7 @@ broken-packages: - unpack-funcs - unroll-ghc-plugin - unsafely + - unsatisfiable - unsequential - unused - uom-plugin @@ -5444,15 +5579,16 @@ broken-packages: - utf8-conversions - utf8-prelude - utf8-validator - - UTFTConverter - util - util-logict - util-plus - util-primitive - uuagc-bootstrap + - uuagc-cabal - uuagc-diagrams - uu-cco - uuid-aeson + - uusi - uvector - uxadt - vabal-lib @@ -5469,7 +5605,6 @@ broken-packages: - variables - variadic - variation - - vaultaire-common - vault-tool - vcache - vcatt @@ -5493,22 +5628,22 @@ broken-packages: - vector-space-opengl - vector-space-points - vector-static - - Vec-Transform - - velma + - vega-view - Verba - verbalexpressions - verdict - verify - verilog - - verismith - - versioning-servant - - vformat-aeson + - verset + - versioning + - vformat + - vgrep - vhd - vhdl - vicinity - - ViennaRNA-extras - viewprof - views + - Villefort - vimus - vintage-basic - vinyl-json @@ -5518,6 +5653,7 @@ broken-packages: - vinyl-vectors - virthualenv - visibility + - visualize-cbn - visual-prof - vitrea - vk-aws-route53 @@ -5537,7 +5673,6 @@ broken-packages: - wai-graceful - wai-handler-devel - wai-handler-fastcgi - - wai-handler-hal - wai-handler-scgi - wai-handler-webkit - wai-hmac-auth @@ -5565,7 +5700,6 @@ broken-packages: - wai-router - wai-routes - wai-secure-cookies - - wai-session-alt - wai-session-mysql - wai-session-postgresql - wai-session-redis @@ -5574,8 +5708,8 @@ broken-packages: - wai-throttler - waitra - wallpaper + - warc - warp-dynamic - - warp-grpc - warp-static - warp-systemd - wasm @@ -5584,33 +5718,30 @@ broken-packages: - wavefront - wavefront-obj - weak-bag + - WeakSets - Weather - weather-api - web3-ipfs - webapi - webapp - WebBits - - webcloud - webcrank - webcrank-dispatch - web-css - - webdriver + - webdriver-angular - webdriver-snoy - web-encodings - WeberLogic - - webex-teams-pipes - webfinger-client - webkitgtk3 - webkit-javascriptcore - webmention - web-output - web-push - - web-rep - Webrexp - web-routes-quasi - web-routes-transformers - webshow - - websockets-rpc - webwire - wedged - WEditor @@ -5624,7 +5755,6 @@ broken-packages: - whim - whiskers - whois - - wholepixels - why3 - WikimediaParser - willow @@ -5634,11 +5764,11 @@ broken-packages: - wireguard-hs - wires - wiring - - witness - witty - wkt - wkt-geom - WL500gPLib + - wl-pprint-console - wl-pprint-extras - WMSigner - woe @@ -5654,10 +5784,10 @@ broken-packages: - wordpass - wordsearch - workdays - - Workflow - workflow-osx - workflow-windows - work-time + - worldturtle - wp-archivebot - wreq-helper - wreq-patchable @@ -5667,7 +5797,7 @@ broken-packages: - writer-cps-morph - wsdl - wsedit - - wsjtx-udp + - wss-client - wtk - wumpus-core - wxdirect @@ -5703,7 +5833,9 @@ broken-packages: - XmlHtmlWriter - xml-parsec - xml-prettify + - xml-prettify-text - xml-query-xml-types + - xml-syntax - xml-to-json - xml-tydom-core - xml-verify @@ -5718,16 +5850,15 @@ broken-packages: - xmonad-windownames - Xorshift128Plus - xorshift-plus - - xournal-types - - xrefcheck - xsact - xsd + - xsha1 - xslt - - xstatic-th - - xturtle + - xxhash - y0l0bot - yabi-muno - yackage + - YACPong - yahoo-finance-api - yahoo-finance-conduit - yahoo-prices @@ -5745,7 +5876,6 @@ broken-packages: - YamlReference - yaml-rpc - yaml-union - - yaml-unscrambler - yampa2048 - yampa-glfw - yampa-gloss @@ -5755,9 +5885,8 @@ broken-packages: - yandex-translate - yaop - yapb - - yarl + - yarn2nix - yarr - - yasi - yate - yaya-test - yaya-unsafe-test @@ -5777,7 +5906,6 @@ broken-packages: - yesod-auth-ldap-mediocre - yesod-auth-ldap-native - yesod-auth-nopassword - - yesod-auth-oauth - yesod-auth-pam - yesod-auth-smbclient - yesod-auth-zendesk @@ -5800,6 +5928,7 @@ broken-packages: - yesod-katip - yesod-links - yesod-lucid + - yesod-middleware-csp - yesod-paginate - yesod-pagination - yesod-pnotify @@ -5822,9 +5951,11 @@ broken-packages: - yhccore - yhseq - yices - - yi-core + - yi-language + - yoctoparsec - yoda - Yogurt + - youtube - yu-core - yuiGrid - yu-tool @@ -5839,6 +5970,8 @@ broken-packages: - zeno - zeolite-lang - zephyr + - zero + - zeromq3-haskell - zeromq4-clone-pattern - zeromq4-conduit - zeromq4-patterns @@ -5851,7 +5984,7 @@ broken-packages: - zipedit - zipkin - ziptastic-core - - zm + - zlib-lens - ZMachine - zmidi-score - zmqat @@ -5862,6 +5995,7 @@ broken-packages: - zsh-battery - zsyntax - ztar + - zuul - Zwaluw - zxcvbn-dvorak - zydiskell diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml index 6376c71171..9cf285d876 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml @@ -1,40 +1,40 @@ # pkgs/development/haskell-modules/configuration-hackage2nix.yaml -compiler: ghc-9.0.2 +compiler: ghc-9.2.4 core-packages: + - Cabal-3.6.3.0 - array-0.5.4.0 - - base-4.15.1.0 - - binary-0.8.8.0 - - bytestring-0.10.12.1 - - Cabal-3.4.1.0 - - containers-0.6.4.1 - - deepseq-1.4.5.0 + - base-4.16.3.0 + - binary-0.8.9.0 + - bytestring-0.11.3.1 + - containers-0.6.5.1 + - deepseq-1.4.6.1 - directory-1.3.6.2 - exceptions-0.10.4 - - filepath-1.4.2.1 - - ghc-9.0.2 - - ghc-bignum-1.1 - - ghc-boot-9.0.2 - - ghc-boot-th-9.0.2 + - filepath-1.4.2.2 + - ghc-9.2.4 + - ghc-bignum-1.2 + - ghc-boot-9.2.4 + - ghc-boot-th-9.2.4 - ghc-compact-0.1.0.0 - - ghc-heap-9.0.2 - - ghc-prim-0.7.0 - - ghci-9.0.2 + - ghc-heap-9.2.4 + - ghc-prim-0.8.0 + - ghci-9.2.4 - haskeline-0.8.2 - hpc-0.6.1.0 - integer-gmp-1.1 - - libiserv-9.0.2 + - libiserv-9.2.4 - mtl-2.2.2 - - parsec-3.1.14.0 + - parsec-3.1.15.0 - pretty-1.1.3.6 - process-1.6.13.2 - rts-1.0.2 - - stm-2.5.0.0 - - template-haskell-2.17.0.0 + - stm-2.5.0.2 + - template-haskell-2.18.0.0 - terminfo-0.4.1.5 - text-1.2.5.0 - - time-1.9.3 + - time-1.11.1.1 - transformers-0.5.6.2 - unix-2.7.2.2 - xhtml-3000.2.2.1 @@ -70,29 +70,24 @@ core-packages: default-package-overrides: # gi-gdkx11-4.x requires gtk-4.x, but stackage still restricts gi-gtk to 3.* - gi-gdkx11 < 4 - # reflex-dom-pandoc is only used by neuron which needs a version < 1.0.0.0 - - reflex-dom-pandoc < 1.0.0.0 # 2022-02-18: pin to our current GHC version - ghc-api-compat == 9.0.* # 2021-11-09: ghc-bignum is bundled starting with 9.0.1; only 1.0 builds with GHCs prior to 9.2.1 - ghc-bignum == 1.0 # 1.2.0.0: “Dropped support for GHC <9.2 (might readd it later)” - retrie < 1.2.0.0 - # On the recommendation of hnix author: - # https://github.com/NixOS/nixpkgs/pull/154461#issuecomment-1015511883 - - hnix < 0.15 # needs http-client >= 0.7.11 which isn't part of Stackage LTS 18 - http-client-restricted < 0.0.5 - # Needs dhall 1.41.*, Stackage LTS 19 has 1.40 - - dhall-nix < 1.1.24 - # patch is primarily used by reflex packages not all of which are patch 0.0.7 compatible yet - - patch < 0.0.7 - - reflex < 0.8.2.1 - - reflex-dom-core < 0.7.0.2 # Downgrade hasql-dynamic-statements until hasql 1.6 is in Stackage - hasql-dynamic-statements < 0.3.1.2 # Its dependency brick >= 1.0 is not yet in stackage - brick-skylighting < 1.0 + - rope-utf16-splay < 0.4.0.0 + # hnix < 0.17 (unreleased) needs hnix-store-* 0.5.* + - hnix-store-core == 0.5.0.0 # 2022-06-17: Until hnix 0.17 + - hnix-store-remote == 0.5.0.0 # 2022-06-17: Until hnix 0.17 + # reflex-dom-core 0.7.0.2 has no reflex 0.9 compatible release and most likely most people will want to use them together + - reflex < 0.9.0.0 extra-packages: - Cabal == 2.2.* # required for jailbreak-cabal etc. @@ -101,8 +96,8 @@ extra-packages: - Cabal == 3.4.* # required for cabal-install etc. - Cabal == 3.6.* # required for cabal-install-parsers etc. - Diff < 0.4 # required by liquidhaskell-0.8.10.2: https://github.com/ucsd-progsys/liquidhaskell/issues/1729 - - ShellCheck == 0.7.2 # 2022-02-20: haskell-ci 0.14 needs this - aeson < 2 # required by pantry-0.5.2 + - apply-refact == 0.9.* # 2022-12-12: needed for GHC < 9.2 - attoparsec == 0.13.* # 2022-02-23: Needed to compile elm for now - base16-bytestring < 1 # required for cabal-install etc. - basement < 0.0.15 # 2022-08-30: last version to support GHC < 8.10 @@ -111,7 +106,6 @@ extra-packages: - brick == 1.3 # 2022-11-03: needed by swarm 0.2.0.0 - brittany == 0.13.1.2 # 2022-09-20: needed for hls on ghc 8.8 - cabal-install-parsers < 0.5 # 2022-08-31: required by haskell-ci 0.14.3 - - clay < 0.14 # 2022-03-20: Needed for neuron 1.0.0.0 - crackNum < 3.0 # 2021-05-21: 3.0 removed the lib which sbv 7.13 uses - dependent-map == 0.2.4.0 # required by Hasura 1.3.1, 2020-08-20 - dependent-sum == 0.4 # required by Hasura 1.3.1, 2020-08-20 @@ -122,6 +116,7 @@ extra-packages: - fourmolu == 0.3.0.0 # 2022-09-21: needed for hls on ghc 8.8 - ghc-api-compat == 8.10.7 # 2022-02-17: preserve for GHC 8.10.7 - ghc-api-compat == 8.6 # 2021-09-07: preserve for GHC 8.8.4 + - ghc-exactprint == 0.6.* # 2022-12-12: needed for GHC < 9.2 - ghc-lib == 8.10.7.* # 2022-02-17: preserve for GHC 8.10.7 - ghc-lib == 9.2.* # 2022-02-17: preserve for GHC 9.2 - ghc-lib-parser == 8.10.7.* # 2022-02-17: preserve for GHC 8.10.7 @@ -136,16 +131,16 @@ extra-packages: - hinotify == 0.3.9 # for xmonad-0.26: https://github.com/kolmodin/hinotify/issues/29 - hlint == 3.2.8 # 2022-09-21: needed for hls on ghc 8.8 - hlint == 3.4.1 # 2022-09-21: needed for hls with ghc-lib-parser 9.2 - - hnix-store-core == 0.5.0.0 # 2022-06-17: Until hnix 0.17 - - hnix-store-remote == 0.5.0.0 # 2022-06-17: Until hnix 0.17 - hpack == 0.35.0 # 2022-09-29: Needed for stack-2.9.1 - hspec < 2.8 # 2022-04-07: Needed for tasty-hspec 1.1.6 - hspec-core < 2.8 # 2022-04-07: Needed for tasty-hspec 1.1.6 - hspec-discover < 2.8 # 2022-04-07: Needed for tasty-hspec 1.1.6 + - hspec-meta < 2.8 # 2022-12-07: Needed for elmPackages.elm / hspec-discover - hspec-golden == 0.1.* # 2022-04-07: Needed for elm-format - immortal == 0.2.2.1 # required by Hasura 1.3.1, 2020-08-20 - language-docker == 11.0.0 # required by hadolint 2.12.0, 2022-11-16 - language-javascript == 0.7.0.0 # required by purescript + - lens-aeson < 1.2 # 2022-12-17: For aeson < 2.0 compat - lsp == 1.4.0.0 # 2022-09-18: need for dhall-lsp-server 1.1.2 - lsp-types == 1.4.0.1 # 2022-09-18: need for dhall-lsp-server 1.1.2 - mmorph == 1.1.3 # Newest working version of mmorph on ghc 8.6.5. needed for hls @@ -163,7 +158,7 @@ extra-packages: - vty == 5.35.1 # 2022-07-08: needed for glirc-2.39.0.1 - weeder == 2.2.* # 2022-02-21: preserve for GHC 8.10.7 - weeder == 2.3.* # 2022-05-31: preserve for GHC 9.0.2 - - ghc-exactprint == 1.5.0 # 2022-10-06: newer versions of ghc-exactprint require ghc 9.4.2 + - commonmark-extensions < 0.2.3.3 # 2022-12-17: required by emanote 1.0.0.0 (to avoid a bug in 0.2.3.3) package-maintainers: abbradar: @@ -303,13 +298,16 @@ package-maintainers: - ghcide - haskell-language-server - hedgehog + - hledger + - hledger-ui + - hledger-web - hlint - hmatrix - hspec-discover - iCalendar - matrix-client - - neuron - optics + - pandoc - paths - postgresql-simple - reflex-dom @@ -337,26 +335,16 @@ package-maintainers: pacien: - ldgallery-compiler peti: - - cabal-install - - cabal2nix - cabal2spec - - distribution-nixpkgs - funcmp - git-annex - - hackage-db - - hledger - hledger-interest - - hledger-ui - - hledger-web - hopenssl - hsdns - hsemail - hsyslog - - jailbreak-cabal - - language-nix - logging-facade-syslog - nix-paths - - pandoc - structured-haskell-mode - titlecase - xmonad @@ -406,9 +394,17 @@ package-maintainers: - zre sternenseemann: # also maintain upstream package + - cabal2nix + - distribution-nixpkgs + - hackage-db + - language-nix + - jailbreak-cabal - spacecookie - gopher-proxy # other packages I can help out for + - cabal-install + - hledger + - pandoc - systemd - fast-logger - flat @@ -432,17 +428,22 @@ package-maintainers: terlar: - nix-diff turion: - - rhine - - rhine-gloss + - Agda + - dunai - essence-of-live-coding - essence-of-live-coding-gloss - essence-of-live-coding-pulse - essence-of-live-coding-quickcheck - - Agda - - dunai + - essence-of-live-coding-warp - finite-typelits + - has-transformers + - monad-bayes + - monad-schedule - pulse-simple + - rhine + - rhine-gloss - simple-affine-space + - time-domain utdemir: - nix-tree @@ -527,6 +528,7 @@ unsupported-platforms: sdl2-mixer: [ platforms.darwin ] sdl2-ttf: [ platforms.darwin ] sensei: [ platforms.darwin ] + spade: [ platforms.darwin ] # depends on sdl2-mixer, which doesn't work on darwin synthesizer-alsa: [ platforms.darwin ] taffybar: [ platforms.darwin ] emanote: [ x86_64-darwin ] # Depends on stork which is broken on macOS sdk < 10.14 @@ -589,6 +591,7 @@ supported-platforms: linux-namespaces: [ platforms.linux ] lxc: [ platforms.linux ] midi-alsa: [ platforms.linux ] + OrderedBits: [ platforms.x86 ] # lacks implementations for non-x86: https://github.com/choener/OrderedBits/blob/401cbbe933b1635aa33e8e9b29a4a570b0a8f044/lib/Data/Bits/Ordered.hs#L316 password: [ platforms.x86 ] # uses scrypt, which requries x86 password-instances: [ platforms.x86 ] # uses scrypt, which requries x86 reactivity: [ platforms.windows ] diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml index a359d8ef42..a4364b7d81 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml @@ -1,4 +1,4 @@ -# Stackage LTS 19.32 +# Stackage LTS 20.4 # This file is auto-generated by # maintainers/scripts/haskell/update-stackage.sh default-package-overrides: @@ -15,27 +15,32 @@ default-package-overrides: - ad-delcont ==0.3.0.0 - adjunctions ==4.4.2 - adler32 ==0.1.2.0 - - advent-of-code-api ==0.2.8.1 + - advent-of-code-api ==0.2.8.2 - aern2-mp ==0.2.11.0 - aern2-real ==0.2.11.0 - aeson ==2.0.3.0 - aeson-attoparsec ==0.0.0 - aeson-better-errors ==0.9.1.1 - aeson-casing ==0.2.0.0 - - aeson-commit ==1.4 + - aeson-combinators ==0.1.0.1 + - aeson-commit ==1.6.0 - aeson-compat ==0.3.10 - aeson-diff ==1.1.0.13 - aeson-extra ==0.5.1.1 - aeson-generic-compat ==0.0.1.3 - - aeson-optics ==1.1.1 + - aeson-iproute ==0.3.0 + - aeson-optics ==1.2.0.1 + - aeson-picker ==0.1.0.6 - aeson-pretty ==0.8.9 - aeson-qq ==0.8.4 - - aeson-schemas ==1.3.5.1 - - aeson-typescript ==0.3.0.1 + - aeson-schemas ==1.4.0.1 + - aeson-typescript ==0.4.2.0 + - aeson-value-parser ==0.19.7 - aeson-yak ==0.1.1.3 - aeson-yaml ==1.1.0.1 - Agda ==2.6.2.2 - agda2lagda ==0.2021.6.1 + - airship ==0.9.5 - al ==0.1.4.2 - alarmclock ==0.7.0.6 - alerts ==0.1.2.0 @@ -43,23 +48,23 @@ default-package-overrides: - alex-meta ==0.3.0.13 - algebra ==4.3.1 - algebraic-graphs ==0.6.1 - - align-audio ==0.0 - Allure ==0.11.0.0 - almost-fix ==0.0.2 - alsa-core ==0.5.0.1 - alsa-mixer ==0.3.0 - alsa-pcm ==0.6.1.1 - - alsa-seq ==0.6.0.8 - alternative-vector ==0.0.0 - alternators ==1.0.0.0 - ALUT ==2.4.0.3 - amqp ==0.22.1 - amqp-utils ==0.6.3.2 + - annotated-exception ==0.2.0.4 - annotated-wl-pprint ==0.7.0 - - ansi-terminal ==0.11.3 - - ansi-terminal-game ==1.8.0.0 + - ansi-terminal ==0.11.4 + - ansi-terminal-game ==1.8.0.1 - ansi-wl-pprint ==0.6.9 - ANum ==0.2.0.2 + - aos-signature ==0.1.1 - apecs ==0.9.4 - apecs-gloss ==0.2.4 - apecs-physics ==0.4.5 @@ -67,24 +72,27 @@ default-package-overrides: - api-maker ==0.1.0.6 - ap-normalize ==0.1.0.1 - appar ==0.1.8 + - appendful ==0.1.0.0 + - appendful-persistent ==0.1.0.0 - appendmap ==0.1.5 - - apply-refact ==0.9.3.0 + - apply-refact ==0.10.0.0 - apportionment ==0.0.0.4 - approximate ==0.3.5 - approximate-equality ==1.1.0.2 - app-settings ==0.2.0.12 - arbor-lru-cache ==0.1.1.1 + - arbtt ==0.12.0.1 - arithmoi ==0.12.0.2 - array-memoize ==0.6.0 - arrow-extras ==0.1.0.1 - arrows ==0.4.4.2 - - ascii ==1.1.3.0 + - ascii ==1.2.3.0 - ascii-case ==1.0.0.11 - ascii-char ==1.0.0.15 - asciidiagram ==1.3.3.3 - ascii-group ==1.0.0.13 - - ascii-numbers ==1.0.0.0 - - ascii-predicates ==1.0.0.10 + - ascii-numbers ==1.1.0.0 + - ascii-predicates ==1.0.1.0 - ascii-progress ==0.3.3.0 - ascii-superset ==1.0.1.13 - ascii-th ==1.0.0.11 @@ -106,40 +114,41 @@ default-package-overrides: - attoparsec ==0.14.4 - attoparsec-base64 ==0.0.0 - attoparsec-binary ==0.2 - - attoparsec-data ==1.0.5.2 + - attoparsec-data ==1.0.5.3 - attoparsec-expr ==0.1.1.2 - attoparsec-iso8601 ==1.0.2.1 - attoparsec-path ==0.0.0.1 - attoparsec-time ==1.0.3 - - audacity ==0.0.2.1 - aur ==7.0.7 + - aura ==3.2.9 - authenticate ==1.3.5.1 - authenticate-oauth ==1.7 + - autodocodec ==0.2.0.1 + - autodocodec-openapi3 ==0.2.1.1 + - autodocodec-schema ==0.1.0.2 + - autodocodec-yaml ==0.2.0.2 - autoexporter ==2.0.0.2 - auto-update ==0.1.6 - - aws-cloudfront-signed-cookies ==0.2.0.10 + - avro ==0.6.1.2 + - aws-cloudfront-signed-cookies ==0.2.0.11 - aws-xray-client ==0.1.0.2 - aws-xray-client-persistent ==0.1.0.5 - aws-xray-client-wai ==0.1.0.2 - backtracking ==0.1.0 - bank-holidays-england ==0.2.0.8 - barbies ==2.0.3.1 - - barrier ==0.1.1 - - base16 ==0.3.2.0 + - base16 ==0.3.2.1 - base16-bytestring ==1.0.2.0 - - base16-lens ==0.1.3.2 - base32 ==0.2.2.0 - - base32-lens ==0.1.1.1 - base32string ==0.9.1 - base58-bytestring ==0.1.0 - base58string ==0.10.0 - base64 ==0.4.2.4 - base64-bytestring ==1.2.1.0 - base64-bytestring-type ==1.0.1 - - base64-lens ==0.3.1 - base64-string ==0.2 - - base-compat ==0.11.2 - - base-compat-batteries ==0.11.2 + - base-compat ==0.12.2 + - base-compat-batteries ==0.12.2 - basement ==0.0.15 - base-orphans ==0.8.7 - base-prelude ==1.6.1 @@ -148,6 +157,8 @@ default-package-overrides: - battleship-combinatorics ==0.0.1 - bazel-runfiles ==0.12 - bbdb ==0.8 + - bcp47 ==0.2.0.6 + - bcp47-orphans ==0.1.0.5 - bcrypt ==0.0.11 - beam-core ==0.9.2.1 - beam-migrate ==0.5.1.2 @@ -157,12 +168,15 @@ default-package-overrides: - bech32-th ==1.1.1 - bench ==1.0.12 - benchpress ==0.2.2.21 + - bench-show ==0.3.2 - bencode ==0.6.1.1 - bencoding ==0.4.5.4 + - benri-hspec ==0.1.0.0 - between ==0.11.0.0 + - bhoogle ==0.1.4.2 - bibtex ==0.1.0.6 - - bifunctors ==5.5.13 - - bimap ==0.4.0 + - bifunctors ==5.5.14 + - bimap ==0.5.0 - bimaps ==0.1.0.2 - bimap-server ==0.1.0.1 - bin ==0.1.2 @@ -175,7 +189,6 @@ default-package-overrides: - binary-list ==1.1.1.2 - binary-orphans ==1.0.3 - binary-parser ==0.5.7.2 - - binary-parsers ==0.2.4.0 - binary-search ==2.0.0 - binary-shared ==0.8.3 - binary-tagged ==0.3.1 @@ -183,11 +196,7 @@ default-package-overrides: - bindings-GLFW ==3.3.2.0 - bindings-libzip ==1.0.1 - bindings-uname ==0.1 - - BiobaseENA ==0.0.0.2 - BiobaseEnsembl ==0.2.0.1 - - BiobaseFasta ==0.4.0.1 - - BiobaseTypes ==0.2.1.0 - - BiobaseXNA ==0.11.1.1 - bitarray ==0.0.1.1 - bits ==0.6 - bitset-word8 ==0.1.1.2 @@ -195,6 +204,8 @@ default-package-overrides: - bitvec ==1.1.3.0 - bitwise-enum ==1.0.1.0 - blake2 ==0.3.0 + - Blammo ==1.1.1.1 + - blank-canvas ==0.7.3 - blanks ==0.5.0 - blas-carray ==0.1.0.1 - blas-comfort-array ==0.0.0.3 @@ -202,34 +213,33 @@ default-package-overrides: - blas-hs ==0.1.1.0 - blaze-bootstrap ==0.1.0.1 - blaze-builder ==0.4.2.2 - - blaze-colonnade ==1.2.2.1 - blaze-html ==0.9.1.2 - blaze-markup ==0.8.2.8 - blaze-svg ==0.3.6.1 - blaze-textual ==0.2.2.1 + - bloodhound ==0.21.0.0 - bm ==0.1.0.2 - bmp ==1.2.6.3 - bnb-staking-csvs ==0.2.1.0 - BNFC ==2.9.4 - BNFC-meta ==0.6.1 - - board-games ==0.3 - bodhi ==0.1.0 - boltzmann-samplers ==0.1.1.0 - bookkeeping ==0.4.0.1 - Boolean ==0.2.4 - - boolean-like ==0.1.1.0 - boolsimplifier ==0.1.8 - boomerang ==1.4.8 - boots ==0.2.0.1 - bordacount ==0.1.0.0 - boring ==0.2 - - both ==0.1.1.2 - bound ==2.0.5 - BoundedChan ==1.0.3.0 - bounded-queue ==1.0.0 + - boundingboxes ==0.2.3 + - bower-json ==1.1.0.0 - boxes ==0.1.5 - - brick ==0.68.1 - - brittany ==0.14.0.2 + - breakpoint ==0.1.2.0 + - brick ==1.4 - broadcast-chan ==0.2.1.2 - brotli ==0.0.0.1 - brotli-streams ==0.0.0.0 @@ -238,52 +248,61 @@ default-package-overrides: - bson-lens ==0.1.1 - buffer-builder ==0.2.4.8 - buffer-pipe ==0.0 + - bugsnag ==1.0.0.1 - bugsnag-haskell ==0.0.4.4 - bugsnag-hs ==0.2.0.9 - - bugzilla-redhat ==1.0.0 + - bugsnag-wai ==1.0.0.1 + - bugsnag-yesod ==1.0.0.1 + - bugzilla-redhat ==1.0.1 - burrito ==2.0.1.2 - butcher ==1.3.3.2 - - buttplug-hs-core ==0.1.0.1 - bv ==0.5 - byteable ==0.1.1 + - bytebuild ==0.3.12.0 - byte-count-reader ==0.10.1.9 - bytedump ==1.0 + - bytehash ==0.1.0.0 - byte-order ==0.1.3.0 - byteorder ==1.0.4 - bytes ==0.17.2 - byteset ==0.1.1.0 + - byteslice ==0.2.7.0 + - bytesmith ==0.3.9.0 - bytestring-builder ==0.10.8.2.0 - bytestring-conversion ==0.3.2 - bytestring-lexing ==0.5.0.9 - bytestring-mmap ==0.2.2 + - bytestring-progress ==1.4 - bytestring-strict-builder ==0.4.5.6 - bytestring-to-vector ==0.3.0.1 - bytestring-tree-builder ==0.2.7.10 - bytestring-trie ==0.2.7 - bz2 ==1.0.1.0 - - bzlib ==0.5.1.0 - bzlib-conduit ==0.3.0.2 - c14n ==0.1.0.2 - c2hs ==0.28.8 - - cabal2spec ==2.6.2 + - cabal2spec ==2.6.3 - cabal-appimage ==0.3.0.5 - - cabal-clean ==0.1.20220814 + - cabal-clean ==0.2.20220819 + - cabal-debian ==5.2.1 - cabal-doctest ==1.0.9 - cabal-file ==0.1.1 - cabal-file-th ==0.2.7 - cabal-flatpak ==0.1.0.3 - - cabal-plan ==0.7.2.1 + - cabal-plan ==0.7.2.3 - cabal-rpm ==2.0.11.1 - Cabal-syntax ==3.6.0.0 - cache ==0.1.3.0 - cached-json-file ==0.1.1 - cacophony ==0.10.1 + - cairo ==0.13.8.2 - calendar-recycling ==0.0.0.1 - - call-alloy ==0.3.0.3 + - call-alloy ==0.4.0.1 + - calligraphy ==0.1.3 + - call-plantuml ==0.0.1.1 - call-stack ==0.4.0 - can-i-haz ==0.3.1.0 - capability ==0.5.0.1 - - capataz ==0.2.1.0 - ca-province-codes ==1.0.0.0 - cardano-coin-selection ==1.0.1 - carray ==0.1.6.8 @@ -291,14 +310,12 @@ default-package-overrides: - casa-types ==0.0.2 - cased ==0.1.0.0 - case-insensitive ==1.2.1.0 - - cases ==0.1.4.1 + - cases ==0.1.4.2 - casing ==0.1.4.1 - cassava ==0.5.3.0 - - cassava-conduit ==0.6.0 - cassava-megaparsec ==2.0.4 - cast ==0.1.0.2 - - caster ==0.0.3.0 - - cayley-client ==0.4.17 + - cayley-client ==0.4.19.2 - cborg ==0.2.8.0 - cborg-json ==0.2.5.0 - cdar-mBound ==0.1.0.4 @@ -306,15 +323,17 @@ default-package-overrides: - cereal ==0.5.8.3 - cereal-conduit ==0.8.0 - cereal-text ==0.1.0.2 + - cereal-unordered-containers ==0.1 - cereal-vector ==0.2.0.1 - cfenv ==0.1.0.0 - - cgi ==3001.5.0.0 - chan ==0.0.4.1 - - ChannelT ==0.0.0.7 - character-cases ==0.1.0.6 - charset ==0.3.9 - charsetdetect-ae ==1.1.0.4 - Chart ==1.9.4 + - Chart-cairo ==1.9.3 + - Chart-diagrams ==1.9.4 + - chart-svg ==0.3.2 - ChasingBottoms ==1.3.1.12 - cheapskate ==0.1.1.2 - cheapskate-highlight ==0.1.0.0 @@ -323,29 +342,22 @@ default-package-overrides: - checkers ==0.6.0 - checksum ==0.0 - chimera ==0.3.2.0 - - chiphunk ==0.1.4.0 - choice ==0.2.2 - chronologique ==0.3.1.3 - chunked-data ==0.3.1 - cipher-aes ==0.2.11 - - cipher-aes128 ==0.7.0.6 - cipher-camellia ==0.0.2 - - cipher-des ==0.0.6 - cipher-rc4 ==0.1.4 - circle-packing ==0.1.0.6 - circular ==0.4.0.3 - - citeproc ==0.6.0.1 - - clash-ghc ==1.6.4 - - clash-lib ==1.6.4 - - clash-prelude ==1.6.4 + - citeproc ==0.8.0.2 - classy-prelude ==1.5.0.2 - classy-prelude-conduit ==1.5.0 - classy-prelude-yesod ==1.5.0 - - clay ==0.14.0 - cleff ==0.3.3.0 - cleff-plugin ==0.1.0.0 - clientsession ==0.9.1.2 - - climb ==0.3.3 + - climb ==0.4.1 - Clipboard ==2.3.2.0 - clock ==0.8.3 - closed ==0.2.0.2 @@ -358,10 +370,8 @@ default-package-overrides: - codec-beam ==0.2.0 - code-conjure ==0.5.2 - code-page ==0.2.1 - - coercible-utils ==0.1.0 - cointracking-imports ==0.1.0.2 - collect-errors ==0.1.5.0 - - colonnade ==1.2.0.2 - Color ==0.3.3 - colorful-monoids ==0.2.1.3 - colorize-haskell ==1.0.1 @@ -378,21 +388,25 @@ default-package-overrides: - commutative ==0.0.2 - comonad ==5.0.8 - comonad-extras ==4.0.1 - - compact ==0.2.0.0 - compactmap ==0.1.4.2.1 - compensated ==0.8.3 - compiler-warnings ==0.1.0 - componentm ==0.0.0.2 - componentm-devel ==0.0.0.2 - composable-associations ==0.1.0.0 + - composite-base ==0.8.2.0 + - composite-binary ==0.8.2.0 + - composite-ekg ==0.8.2.0 + - composite-tuple ==0.1.2.0 + - composite-xstep ==0.1.0.0 - composition ==1.0.2.2 - composition-extra ==2.0.0 + - composition-prelude ==3.0.0.2 - concise ==0.1.0.1 - concurrency ==1.11.0.2 - concurrent-extra ==0.7.0.12 - concurrent-output ==1.10.16 - concurrent-split ==0.0.1.1 - - concurrent-supply ==0.1.8 - cond ==0.4.1.1 - conduino ==0.2.2.0 - conduit ==1.3.4.3 @@ -400,18 +414,17 @@ default-package-overrides: - conduit-algorithms ==0.0.13.0 - conduit-combinators ==1.3.0 - conduit-concurrent-map ==0.1.3 - - conduit-connection ==0.1.0.5 - conduit-extra ==1.3.6 - conduit-parse ==0.2.1.1 - conduit-zstd ==0.0.2.0 - conferer ==1.1.0.0 - conferer-aeson ==1.1.0.2 - - conferer-warp ==1.1.0.0 - ConfigFile ==1.1.4 - config-ini ==0.2.5.0 - configuration-tools ==0.6.1 - configurator ==0.3.0.0 - configurator-export ==0.1.0.1 + - configurator-pg ==0.2.7 - connection ==0.3.1 - connection-pool ==0.2.2 - console-style ==0.0.2.1 @@ -419,7 +432,11 @@ default-package-overrides: - constraints-extras ==0.3.2.1 - constraint-tuples ==0.1.2 - construct ==0.3.1.1 - - containers-unicode-symbols ==0.3.1.3 + - context ==0.2.0.1 + - context-http-client ==0.2.0.1 + - context-resource ==0.2.0.1 + - context-wai-middleware ==0.2.0.1 + - contiguous ==0.6.3.0 - contravariant ==1.5.5 - contravariant-extras ==0.3.5.3 - control-bool ==0.2.1 @@ -430,16 +447,19 @@ default-package-overrides: - cookie ==0.4.5 - copr-api ==0.1.0 - core-data ==0.3.8.0 - - core-program ==0.4.6.4 + - core-program ==0.6.1.1 + - core-telemetry ==0.2.7.0 - core-text ==0.3.8.0 - - countable ==1.0 - - covariance ==0.1.0.6 + - countable ==1.2 + - country ==0.2.3 + - covariance ==0.2.0.1 - cpphs ==1.20.9.1 - cprng-aes ==0.6.1 - cpu ==0.1.2 - cpuinfo ==0.1.0.2 + - cql ==4.0.4 + - cql-io ==1.1.1 - crackNum ==3.2 - - crc32c ==0.0.0 - credential-store ==0.1.2 - criterion ==1.5.13.0 - criterion-measurement ==0.1.4.0 @@ -456,7 +476,7 @@ default-package-overrides: - cryptohash-sha1 ==0.11.101.0 - cryptohash-sha256 ==0.11.102.1 - cryptohash-sha512 ==0.11.101.0 - - cryptonite ==0.29 + - cryptonite ==0.30 - cryptonite-conduit ==0.2.2 - cryptonite-openssl ==0.7 - crypto-pubkey-types ==0.4.3 @@ -477,30 +497,29 @@ default-package-overrides: - curl-runnings ==0.17.0 - currencies ==0.2.0.0 - currency ==0.2.0.0 + - currycarbon ==0.2.1.1 - cursor ==0.3.2.0 - cursor-brick ==0.1.0.1 - cursor-fuzzy-time ==0.0.0.0 - cursor-gen ==0.4.0.0 - - cutter ==0.0 - cyclotomic ==1.1.1 - czipwith ==1.0.1.4 - d10 ==1.0.1.0 - data-accessor ==0.2.3 - data-accessor-mtl ==0.2.0.4 - data-accessor-transformers ==0.2.1.7 + - data-array-byte ==0.1.0.1 - data-binary-ieee754 ==0.4.4 - data-bword ==0.1.0.2 - data-checked ==0.3 - data-clist ==0.2 - data-default ==0.7.1.1 - data-default-class ==0.1.2.0 - - data-default-extra ==0.1.0 - data-default-instances-base ==0.1.0.1 - data-default-instances-bytestring ==0.0.1 - data-default-instances-case-insensitive ==0.0.1 - data-default-instances-containers ==0.0.1 - data-default-instances-dlist ==0.0.1 - - data-default-instances-new-base ==0.0.2 - data-default-instances-old-locale ==0.0.1 - data-default-instances-text ==0.0.1 - data-default-instances-unordered-containers ==0.0.1 @@ -511,6 +530,7 @@ default-package-overrides: - data-endian ==0.1.1 - data-fix ==0.3.2 - data-forest ==0.1.0.9 + - data-functor-logistic ==0.0 - data-has ==0.4.0.0 - data-hash ==0.2.0.1 - data-interval ==2.1.1 @@ -534,7 +554,7 @@ default-package-overrides: - dawg-ord ==0.5.1.2 - dbcleaner ==0.1.3 - DBFunctor ==0.1.2.1 - - dbus ==1.2.22 + - dbus ==1.2.27 - dbus-hslogger ==0.1.0.1 - debian ==4.0.4 - debian-build ==0.10.2.1 @@ -554,19 +574,22 @@ default-package-overrides: - deriveJsonNoPrefix ==0.1.0.1 - derive-topdown ==0.0.3.0 - deriving-aeson ==0.2.8 - - deriving-compat ==0.6.1 - - derulo ==2.0.0.3 + - deriving-compat ==0.6.2 - detour-via-sci ==1.0.0 - df1 ==0.4 - - dhall ==1.40.2 - - dhall-bash ==1.0.39 - - dhall-json ==1.7.9 - - dhall-yaml ==1.2.10 + - dhall ==1.41.2 + - dhall-bash ==1.0.40 + - dhall-json ==1.7.11 + - dhall-yaml ==1.2.11 - di ==1.3 - diagrams ==1.4.0.1 - - diagrams-contrib ==1.4.4 + - diagrams-builder ==0.8.0.5 + - diagrams-cairo ==1.4.2 + - diagrams-canvas ==1.4.1.1 + - diagrams-contrib ==1.4.5 - diagrams-core ==1.5.0.1 - - diagrams-lib ==1.4.5.1 + - diagrams-lib ==1.4.5.2 + - diagrams-postscript ==1.5.1 - diagrams-rasterific ==1.4.2.2 - diagrams-solve ==0.1.3 - diagrams-svg ==1.4.3.1 @@ -577,42 +600,44 @@ default-package-overrides: - digest ==0.0.1.3 - digits ==0.3.1 - di-handle ==1.0.1 - - dimensional ==1.4 + - dimensional ==1.5 - di-monad ==1.3.1 - directory-tree ==0.12.1 - direct-sqlite ==2.3.27 - dirichlet ==0.1.0.7 - discount ==0.1.1 - discover-instances ==0.1.0.0 - - discrimination ==0.4.1 + - discrimination ==0.5 - disk-free-space ==0.1.0.1 - - distributed-static ==0.3.9 - distribution-opensuse ==1.1.3 - distributive ==0.6.2.1 + - diversity ==0.8.1.0 - djinn-lib ==0.0.1.4 + - dl-fedora ==0.9.3 - dlist ==1.0 - dlist-instances ==0.1.1.1 - dlist-nonempty ==0.1.1 - - dns ==4.0.1 + - dns ==4.1.0 + - docker ==0.7.0.1 - dockerfile ==0.2.0 - - doclayout ==0.3.1.1 - - docopt ==0.7.0.7 - - doctemplates ==0.10.0.1 - - doctest ==0.18.2 + - doclayout ==0.4 + - doctemplates ==0.10.0.2 + - doctest ==0.20.1 - doctest-discover ==0.2.0.0 - doctest-driver-gen ==0.3.0.5 - doctest-exitcode-stdio ==0.0 - - doctest-extract ==0.1 - doctest-lib ==0.1 - doctest-parallel ==0.2.5 - doldol ==0.4.1.2 - do-list ==1.0.1 - - domain ==0.1.1.3 - - domain-core ==0.1.0.2 + - domain ==0.1.1.4 + - domain-aeson ==0.1 + - domain-cereal ==0.1 + - domain-core ==0.1.0.3 - domain-optics ==0.1.0.3 - do-notation ==0.1.0.2 - dot ==0.3 - - dotenv ==0.9.0.2 + - dotenv ==0.9.0.3 - dotgen ==0.4.3 - dotnet-timespan ==0.0.1.0 - double-conversion ==2.0.4.1 @@ -626,7 +651,7 @@ default-package-overrides: - dual ==0.1.1.1 - dual-tree ==0.2.3.1 - dublincore-xml-conduit ==0.1.0.2 - - dunai ==0.8.3 + - dunai ==0.9.1 - duration ==0.2.0.0 - dvorak ==0.1.0.0 - dynamic-state ==0.3.1 @@ -639,27 +664,33 @@ default-package-overrides: - echo ==0.1.4 - ecstasy ==0.2.1.0 - ed25519 ==0.0.5.0 + - ede ==0.3.3.0 - edit-distance ==0.2.2.1 - edit-distance-vector ==1.0.0.4 - editor-open ==0.6.0.0 + - effectful ==2.2.1.0 + - effectful-core ==2.2.1.0 + - effectful-plugin ==1.0.0.0 + - effectful-th ==1.0.0.0 - either ==5.0.2 - either-both ==0.1.1.1 - either-unwrap ==1.1 - ekg-core ==0.1.1.7 - elerea ==2.9.0 - elf ==0.31 - - eliminators ==0.8 + - eliminators ==0.9 + - elm2nix ==0.3.0 - elm-bridge ==0.8.1 - elm-core-sources ==1.0.0 - elm-export ==0.6.0.1 - - elynx ==0.6.1.1 - - elynx-markov ==0.6.1.1 - - elynx-nexus ==0.6.1.1 - - elynx-seq ==0.6.1.1 - - elynx-tools ==0.6.1.1 - - elynx-tree ==0.6.1.1 - - email-validate ==2.3.2.16 - - emd ==0.2.0.0 + - elynx ==0.7.0.1 + - elynx-markov ==0.7.0.1 + - elynx-nexus ==0.7.0.1 + - elynx-seq ==0.7.0.1 + - elynx-tools ==0.7.0.1 + - elynx-tree ==0.7.0.1 + - emacs-module ==0.1.1.1 + - email-validate ==2.3.2.18 - emojis ==0.1.2 - enclosed-exceptions ==1.0.3 - ENIG ==0.0.1.0 @@ -668,17 +699,16 @@ default-package-overrides: - enumset ==0.1 - enum-text ==0.5.3.0 - envelope ==0.2.2.0 - - envparse ==0.4.1 + - envparse ==0.5.0 - envy ==2.1.1.0 - eq ==4.3 - - equal-files ==0.0.5.3 - equational-reasoning ==0.7.0.1 - equivalence ==0.4.1 - erf ==2.0.0.0 - errata ==0.4.0.0 - - error ==0.3.0.0 + - error ==1.0.0.0 - errorcall-eq-instance ==0.3.0 - - error-or ==0.2.0.0 + - error-or ==0.3.0 - error-or-utils ==0.2.0 - errors ==2.3.0 - errors-ext ==0.4.2 @@ -689,19 +719,15 @@ default-package-overrides: - essence-of-live-coding-pulse ==0.2.6 - essence-of-live-coding-quickcheck ==0.2.6 - essence-of-live-coding-warp ==0.2.6 - - eventful-core ==0.2.0 - - eventful-memory ==0.2.0 - - eventful-test-helpers ==0.2.0 - event-list ==0.1.2 - eventstore ==1.4.2 - every ==0.0.1 - evm-opcodes ==0.1.2 - exact-combinatorics ==0.2.0.11 - exact-pi ==0.5.0.2 - - exception-hierarchy ==0.1.0.6 + - exception-hierarchy ==0.1.0.7 - exception-mtl ==0.4.0.1 - exception-transformers ==0.4.0.11 - - exception-via ==0.1.0.0 - executable-hash ==0.2.0.4 - executable-path ==0.0.3.1 - exit-codes ==1.0.0 @@ -713,6 +739,7 @@ default-package-overrides: - exp-pairs ==0.2.1.0 - express ==1.0.10 - extended-reals ==0.2.4.0 + - extensible ==0.9 - extensible-effects ==5.0.0.1 - extensible-exceptions ==0.1.1.4 - extra ==1.7.12 @@ -726,13 +753,14 @@ default-package-overrides: - fakefs ==0.3.0.2 - fakepull ==0.3.0.2 - faktory ==1.1.2.4 - - fast-builder ==0.1.3.0 + - fasta ==0.10.4.2 - fast-logger ==3.1.1 - fast-math ==1.0.2 - - fastmemo ==0.1.1 + - fb ==2.1.1.1 - fclabels ==2.0.5.1 + - fdo-notify ==0.3.1 - feature-flags ==0.1.0.1 - - fedora-dists ==2.0.0 + - fedora-dists ==2.1.1 - fedora-haskell-tools ==1.0 - feed ==1.3.2.1 - FenwickTree ==0.1.2.1 @@ -740,12 +768,13 @@ default-package-overrides: - fftw-ffi ==0.1 - fgl ==5.7.0.3 - fields-json ==0.4.0.0 + - filecache ==0.4.1 - file-embed ==0.0.15.0 - file-embed-lzma ==0.0.1 - filelock ==0.1.1.5 - filemanip ==0.3.6.3 - file-modules ==0.1.2.4 - - filepath-bytestring ==1.4.2.1.9 + - filepath-bytestring ==1.4.2.1.12 - file-path-th ==0.1.0.0 - filepattern ==0.1.3 - fileplow ==0.1.0.0 @@ -766,8 +795,8 @@ default-package-overrides: - flac ==0.2.0 - flac-picture ==0.1.2 - flags-applicative ==0.1.0.3 - - flat ==0.4.4 - flat-mcmc ==1.5.2 + - flatparse ==0.3.5.1 - flay ==0.4 - flexible-defaults ==0.0.3 - FloatingHex ==0.5 @@ -779,9 +808,7 @@ default-package-overrides: - fn ==0.3.0.2 - focus ==1.0.3 - focuslist ==0.1.1.0 - - fold-debounce ==0.2.0.9 - - fold-debounce-conduit ==0.2.0.6 - - foldl ==1.4.12 + - foldl ==1.4.13 - folds ==0.7.8 - follow-file ==0.0.3 - FontyFruity ==0.5.3.5 @@ -790,13 +817,14 @@ default-package-overrides: - ForestStructures ==0.0.1.0 - forkable-monad ==0.2.0.3 - forma ==1.2.0 + - formatn ==0.2.1 - format-numbers ==0.1.0.1 - formatting ==7.1.3 - - fortran-src ==0.9.0 + - fortran-src ==0.12.0 - foundation ==0.0.29 - - fourmolu ==0.4.0.0 - - Frames ==0.7.3 - - free ==5.1.9 + - fourmolu ==0.9.0.0 + - freckle-app ==1.3.0.0 + - free ==5.1.10 - free-categories ==0.2.0.2 - freenect ==1.2.1 - freer-simple ==1.2.1.2 @@ -812,7 +840,6 @@ default-package-overrides: - funcmp ==1.9 - function-builder ==0.3.0.1 - functor-classes-compat ==2.0.0.2 - - functor-combinators ==0.4.1.0 - fused-effects ==1.1.2.1 - fusion-plugin ==0.2.5 - fusion-plugin-types ==0.1.0 @@ -824,14 +851,15 @@ default-package-overrides: - gauge ==0.2.5 - gd ==3000.7.3 - gdp ==0.0.3.0 + - gemini-exports ==0.1.0.0 - general-games ==1.1.1 - generic-aeson ==0.2.0.14 - - generic-arbitrary ==0.2.2 + - generic-arbitrary ==1.0.1 - generic-constraints ==1.1.1.1 - - generic-data ==0.9.2.1 + - generic-data ==1.0.0.0 - generic-data-surgery ==0.3.0.0 - generic-deriving ==1.14.2 - - generic-functor ==0.2.0.0 + - generic-functor ==1.1.0.0 - generic-lens ==2.2.1.0 - generic-lens-core ==2.2.1.0 - generic-monoid ==0.1.0.1 @@ -841,11 +869,13 @@ default-package-overrides: - generics-eot ==0.4.0.1 - generics-sop ==0.5.1.2 - generics-sop-lens ==0.2.0.1 - - geniplate-mirror ==0.7.8 - - genvalidity ==1.0.0.1 - - genvalidity-bytestring ==1.0.0.0 - - genvalidity-containers ==1.0.0.0 - - genvalidity-criterion ==1.0.0.0 + - genvalidity ==1.1.0.0 + - genvalidity-aeson ==1.0.0.1 + - genvalidity-appendful ==0.1.0.0 + - genvalidity-bytestring ==1.0.0.1 + - genvalidity-case-insensitive ==0.0.0.1 + - genvalidity-containers ==1.0.0.1 + - genvalidity-criterion ==1.1.0.0 - genvalidity-hspec ==1.0.0.2 - genvalidity-hspec-aeson ==1.0.0.0 - genvalidity-hspec-binary ==1.0.0.0 @@ -853,15 +883,22 @@ default-package-overrides: - genvalidity-hspec-hashable ==1.0.0.0 - genvalidity-hspec-optics ==1.0.0.0 - genvalidity-hspec-persistent ==1.0.0.0 + - genvalidity-mergeful ==0.3.0.0 - genvalidity-mergeless ==0.3.0.0 - - genvalidity-path ==1.0.0.0 + - genvalidity-path ==1.0.0.1 - genvalidity-persistent ==1.0.0.1 - genvalidity-property ==1.0.0.0 - genvalidity-scientific ==1.0.0.0 + - genvalidity-sydtest ==1.0.0.0 + - genvalidity-sydtest-aeson ==1.0.0.0 + - genvalidity-sydtest-hashable ==1.0.0.0 + - genvalidity-sydtest-lens ==1.0.0.0 + - genvalidity-sydtest-persistent ==1.0.0.0 - genvalidity-text ==1.0.0.1 - - genvalidity-time ==1.0.0.0 + - genvalidity-time ==1.0.0.1 + - genvalidity-typed-uuid ==0.1.0.1 - genvalidity-unordered-containers ==1.0.0.0 - - genvalidity-uuid ==1.0.0.0 + - genvalidity-uuid ==1.0.0.1 - genvalidity-vector ==1.0.0.0 - geodetics ==0.1.2 - geojson ==4.1.0 @@ -871,20 +908,20 @@ default-package-overrides: - ghc-check ==0.5.0.8 - ghc-compact ==0.1.0.0 - ghc-core ==0.5.6 - - ghc-events ==0.17.0.3 - - ghc-exactprint ==0.6.4 + - ghc-events ==0.18.0 + - ghc-exactprint ==1.5.0 - ghcid ==0.8.7 - ghci-hexcalc ==0.1.1.0 - ghcjs-codemirror ==0.0.0.2 - ghcjs-perch ==0.3.3.3 - - ghc-lib ==9.0.2.20211226 - - ghc-lib-parser ==9.0.2.20211226 - - ghc-lib-parser-ex ==9.0.0.6 + - ghc-lib ==9.2.5.20221107 + - ghc-lib-parser ==9.2.5.20221107 + - ghc-lib-parser-ex ==9.2.0.4 - ghc-parser ==0.2.4.0 - ghc-paths ==0.1.0.12 - - ghc-prof ==1.4.1.11 + - ghc-prof ==1.4.1.12 - ghc-source-gen ==0.4.3.0 - - ghc-syntax-highlighter ==0.0.7.0 + - ghc-syntax-highlighter ==0.0.8.0 - ghc-tcplugins-extra ==0.4.3 - ghc-trace-events ==0.1.2.6 - ghc-typelits-extra ==0.4.4 @@ -912,27 +949,31 @@ default-package-overrides: - gi-gtksource ==3.0.26 - gi-harfbuzz ==0.0.7 - gi-javascriptcore ==4.0.25 - - ginger ==0.10.4.0 + - gio ==0.13.8.2 - gi-pango ==1.0.27 - githash ==0.1.6.3 - - github ==0.27 + - github ==0.28.0.1 - github-release ==2.0.0.2 - github-rest ==1.1.2 - github-types ==0.2.1 - - github-webhooks ==0.15.0 + - github-webhooks ==0.16.0 + - gitlab-haskell ==1.0.0.1 + - git-lfs ==1.2.0 + - gitlib ==3.1.3 - gitrev ==1.3.1 - gi-vte ==2.91.30 - gi-xlib ==2.0.12 - gl ==0.9 - - glabrous ==2.0.6 - glasso ==0.1.0 - GLFW-b ==3.3.0.0 + - glib ==0.13.8.2 - Glob ==0.10.2 - glob-posix ==0.2.0.1 - - gloss ==1.13.2.1 + - gloss ==1.13.2.2 - gloss-algorithms ==1.13.0.3 + - gloss-examples ==1.13.0.4 - gloss-raster ==1.13.1.2 - - gloss-rendering ==1.13.1.1 + - gloss-rendering ==1.13.1.2 - GLURaw ==2.0.0.5 - GLUT ==2.7.0.16 - gmail-simple ==0.1.0.4 @@ -940,79 +981,79 @@ default-package-overrides: - goldplate ==0.2.0 - google-isbn ==1.0.3 - gopher-proxy ==0.1.1.3 - - gothic ==0.1.8 - gotyno-hs ==1.1.0 - gpolyline ==0.1.0.1 - graph-core ==0.3.0.0 - graphite ==0.10.0.1 + - graphql-client ==1.2.1 - graphs ==0.7.2 - graphula ==2.0.2.2 - graphviz ==2999.20.1.0 - graph-wrapper ==0.2.6.0 - gravatar ==0.8.1 - - greskell ==2.0.0.0 - - greskell-core ==1.0.0.0 - - greskell-websocket ==1.0.0.0 + - gridtables ==0.0.3.0 - groom ==0.1.2.1 - - groundhog ==0.12.0 - - groundhog-postgresql ==0.12 - - groundhog-sqlite ==0.12.0 - - group-by-date ==0.1.0.4 - grouped-list ==0.2.3.0 - groups ==0.5.3 + - gtk ==0.15.7 - gtk2hs-buildtools ==0.13.8.3 + - gtk3 ==0.15.7 - gtk-sni-tray ==0.1.8.1 - gtk-strut ==0.1.3.2 - guarded-allocation ==0.0.1 - hackage-cli ==0.0.3.6 - hackage-db ==2.1.2 - - hackage-security ==0.6.2.2 + - hackage-security ==0.6.2.3 - haddock-library ==1.10.0 - - hadoop-streaming ==0.2.0.3 - hakyll ==4.15.1.1 - hakyll-convert ==0.3.0.4 - - hal ==0.4.10.1 + - hal ==1.0.0.1 - half ==0.3.1 - hall-symbols ==0.1.0.6 - - hamilton ==0.1.0.3 + - hamlet ==1.2.0 - hamtsolo ==1.0.4 - HandsomeSoup ==0.4.2 - handwriting ==0.1.0.3 + - happstack-hsp ==7.3.7.6 + - happstack-jmacro ==7.0.12.4 - happstack-server ==7.7.2 - happstack-server-tls ==7.2.1.3 - happy ==1.20.0 - happy-meta ==0.2.0.11 - - HasBigDecimal ==0.1.1 + - harp ==0.4.3.5 + - HasBigDecimal ==0.2.0.0 - hasbolt ==0.1.6.2 - - hashable ==1.3.5.0 - - hashable-time ==0.3 + - hashable ==1.4.1.0 - hashids ==1.0.2.7 - - hashing ==0.1.0.1 - hashmap ==1.3.3 - - hashtables ==1.2.4.2 + - hashtables ==1.3.1 - haskeline ==0.8.2 - - haskell-awk ==1.2.0.1 - haskell-gi ==0.26.2 - haskell-gi-base ==0.26.3 - haskell-gi-overloading ==1.0 - haskell-lexer ==1.1 - - haskell-lsp-types ==0.24.0.0 + - HaskellNet ==0.6.0.1 + - HaskellNet-SSL ==0.3.4.4 - haskell-src ==1.0.4 - haskell-src-exts ==1.23.1 + - haskell-src-exts-simple ==1.23.0.0 - haskell-src-exts-util ==0.2.5 - haskell-src-meta ==0.8.11 - haskey-btree ==0.3.0.1 - haskintex ==0.8.0.1 - haskoin-core ==0.21.2 + - haskoin-store-data ==0.65.5 - hasktags ==0.72.0 - - hasql ==1.5.1 + - hasql ==1.6.3 + - hasql-dynamic-statements ==0.3.1.2 + - hasql-implicits ==0.1.0.5 - hasql-migration ==0.3.0 - hasql-notifications ==0.2.0.3 - - hasql-optparse-applicative ==0.3.0.9 - - hasql-pool ==0.5.2.2 + - hasql-optparse-applicative ==0.5 + - hasql-pool ==0.8.0.6 - hasql-queue ==1.2.0.2 - - hasql-th ==0.4.0.17 - - hasql-transaction ==1.0.1.1 + - hasql-th ==0.4.0.18 + - hasql-transaction ==1.0.1.2 - has-transformers ==0.1.0.4 - hasty-hamiltonian ==1.3.4 - HaTeX ==3.22.3.1 @@ -1027,7 +1068,7 @@ default-package-overrides: - heaps ==0.4 - heatshrink ==0.1.0.0 - hebrew-time ==0.1.2 - - hedgehog ==1.0.5 + - hedgehog ==1.1.2 - hedgehog-classes ==0.2.5.3 - hedgehog-corpus ==0.2.0 - hedgehog-fakedata ==0.0.1.5 @@ -1040,47 +1081,46 @@ default-package-overrides: - heterocephalus ==1.0.5.7 - hex ==0.2.0 - hexml ==0.3.4 + - hexml-lens ==0.2.2 - hexpat ==0.20.13 - - hex-text ==0.1.0.6 + - hex-text ==0.1.0.7 - hformat ==0.3.3.1 - hfsevents ==0.1.6 - hgeometry ==0.14 - hgeometry-combinatorial ==0.14 - - hid ==0.2.2 - hidapi ==0.1.8 + - hierarchical-clustering ==0.4.7 - hi-file-parser ==0.1.3.0 - - higher-leveldb ==0.6.0.0 - highlighting-kate ==0.6.4 - hindent ==5.3.4 - hinfo ==0.0.3.0 - hinotify ==0.4.1 - hint ==0.9.0.6 + - hip ==1.5.6.0 - histogram-fill ==0.9.1.0 - hjsmin ==0.2.0.4 - hkd-default ==1.1.0.0 - - hkgr ==0.3 - - hledger ==1.25 - - hledger-iadd ==1.3.17 - - hledger-interest ==1.6.3 - - hledger-lib ==1.25 - - hledger-stockquotes ==0.1.2.0 - - hledger-ui ==1.25 - - hledger-web ==1.25 + - hkgr ==0.4.2 + - hledger ==1.27.1 + - hledger-interest ==1.6.4 + - hledger-lib ==1.27.1 + - hledger-stockquotes ==0.1.2.1 + - hledger-ui ==1.27.1 + - hledger-web ==1.27.1 - hlibcpuid ==0.2.0 - hlibgit2 ==0.18.0.16 - hlibsass ==0.1.10.1 - - hlint ==3.3.6 + - hlint ==3.4.1 - hmatrix ==0.20.2 - hmatrix-gsl ==0.19.0.1 - hmatrix-gsl-stats ==0.4.1.8 - hmatrix-morpheus ==0.1.1.2 - hmatrix-repa ==0.1.2.2 + - hmatrix-special ==0.19.0.0 - hmatrix-vector-sized ==0.1.3.0 - - hmm-lapack ==0.5 - HMock ==0.5.1.0 - hnock ==0.4.0 - - hoauth2 ==2.3.0 - - hocilib ==0.2.0 + - hoauth2 ==2.6.0 - hoogle ==5.0.18.3 - hopenssl ==2.2.4 - hopfli ==0.2.2.1 @@ -1091,13 +1131,13 @@ default-package-overrides: - hourglass ==0.2.12 - hourglass-orphans ==0.1.0.0 - hp2pretty ==0.10 - - hpack ==0.34.7 - - hpack-dhall ==0.5.4 + - hpack ==0.35.0 + - hpack-dhall ==0.5.7 - hpc-codecov ==0.3.0.0 + - hpc-lcov ==1.1.0 - HPDF ==1.6.0 - hpp ==0.6.5 - hpqtypes ==1.9.4.0 - - hprotoc ==2.4.17 - hreader ==1.1.0 - hreader-lens ==0.1.3.0 - hruby ==0.5.0.0 @@ -1106,38 +1146,38 @@ default-package-overrides: - hsc2hs ==0.68.8 - hscolour ==1.24.4 - hsdns ==1.8 + - hse-cpp ==0.2 - hsemail ==2.2.1 - hset ==2.2.0 - - hsexif ==0.6.1.9 - hs-GeoIP ==0.3 - hsignal ==0.2.7.5 - hsini ==0.5.1.2 - hsinstall ==2.7 - HSlippyMap ==3.0.1 - hslogger ==1.3.1.0 - - hslua ==2.1.0 - - hslua-aeson ==2.1.0 - - hslua-classes ==2.1.0 - - hslua-core ==2.1.0 - - hslua-marshalling ==2.1.0 + - hslua ==2.2.1 + - hslua-aeson ==2.2.1 + - hslua-classes ==2.2.0 + - hslua-core ==2.2.1 + - hslua-marshalling ==2.2.1 - hslua-module-doclayout ==1.0.4 - hslua-module-path ==1.0.3 - hslua-module-system ==1.0.2 - hslua-module-text ==1.0.2 - hslua-module-version ==1.0.3 - - hslua-objectorientation ==2.1.0 - - hslua-packaging ==2.1.0 + - hslua-objectorientation ==2.2.1 + - hslua-packaging ==2.2.1 - hsndfile ==0.8.0 - hsndfile-vector ==0.5.2 - HsOpenSSL ==0.11.7.2 - HsOpenSSL-x509-system ==0.1.0.4 - hsp ==0.10.0 - - hspec ==2.8.5 + - hspec ==2.9.7 - hspec-attoparsec ==0.1.0.2 - hspec-checkers ==0.1.0.2 - - hspec-contrib ==0.5.1 - - hspec-core ==2.8.5 - - hspec-discover ==2.8.5 + - hspec-contrib ==0.5.1.1 + - hspec-core ==2.9.7 + - hspec-discover ==2.9.7 - hspec-expectations ==0.8.2 - hspec-expectations-json ==1.0.0.7 - hspec-expectations-lifted ==0.10.0 @@ -1145,25 +1185,26 @@ default-package-overrides: - hspec-golden ==0.2.0.0 - hspec-golden-aeson ==0.9.0.0 - hspec-hedgehog ==0.0.1.2 - - hspec-junit-formatter ==1.0.3.0 + - hspec-junit-formatter ==1.1.0.2 - hspec-leancheck ==0.0.6 - hspec-megaparsec ==2.2.0 - - hspec-meta ==2.7.8 + - hspec-meta ==2.9.3 - hspec-need-env ==0.1.0.10 - hspec-parsec ==0 - hspec-smallcheck ==0.5.2 - hspec-tmp-proc ==0.5.1.2 - hspec-wai ==0.11.1 + - hspec-wai-json ==0.11.0 - hs-php-session ==0.0.9.3 - hsshellscript ==3.5.0 - - hs-tags ==0.1.5.3 - hstatistics ==0.3.1 - HStringTemplate ==0.8.8 - HSvm ==0.1.1.3.25 + - hsx2hs ==0.14.1.10 + - hsx-jmacro ==7.3.8.2 - HsYAML ==0.2.1.1 - HsYAML-aeson ==0.2.0.1 - hsyslog ==5.0.2 - - hsyslog-udp ==0.2.5 - htaglib ==1.2.0 - HTF ==0.15.0.0 - html ==1.0.1.2 @@ -1171,13 +1212,16 @@ default-package-overrides: - html-email-validate ==0.2.0.0 - html-entities ==1.1.4.6 - html-entity-map ==0.1.0.0 + - htoml-megaparsec ==2.1.0.4 + - htoml-parse ==0.1.0.1 - http2 ==3.0.3 - - HTTP ==4000.3.16 + - HTTP ==4000.4.1 - http-api-data ==0.4.3 - http-api-data-qq ==0.1.0.0 - http-client ==0.7.13.1 - http-client-openssl ==0.3.3 - http-client-overrides ==0.1.1.0 + - http-client-restricted ==0.0.5 - http-client-tls ==0.3.6.1 - http-common ==0.8.3.4 - http-conduit ==2.3.8 @@ -1198,7 +1242,7 @@ default-package-overrides: - hunit-dejafu ==2.0.0.6 - hvect ==0.4.0.1 - hvega ==0.12.0.3 - - hw-balancedparens ==0.4.1.2 + - hw-balancedparens ==0.4.1.3 - hw-bits ==0.7.2.2 - hw-conduit ==0.2.1.1 - hw-conduit-merges ==0.2.1.0 @@ -1210,8 +1254,10 @@ default-package-overrides: - hw-fingertree ==0.1.2.1 - hw-fingertree-strict ==0.1.2.1 - hw-hedgehog ==0.1.1.1 + - hw-hspec-hedgehog ==0.1.1.1 - hw-int ==0.0.2.0 - hw-ip ==2.4.2.1 + - hw-json ==1.3.2.3 - hw-json-simd ==0.1.1.1 - hw-json-simple-cursor ==0.1.1.1 - hw-json-standard-cursor ==0.2.3.2 @@ -1239,14 +1285,12 @@ default-package-overrides: - hxt-tagsoup ==9.1.4 - hxt-unicode ==9.0.2.4 - hybrid-vectors ==0.2.3 - - hyper ==0.2.1.1 - hyperloglog ==0.4.6 - hyphenation ==0.8.2 - - iconv ==0.4.1.3 - identicon ==0.2.2 - ieee754 ==0.8.0 - if ==0.1.0.0 - - iff ==0.0.6 + - IfElse ==0.85 - ihaskell ==0.10.3.0 - ihaskell-hvega ==0.5.0.3 - ihs ==0.1.0.3 @@ -1257,6 +1301,7 @@ default-package-overrides: - immortal-queue ==0.1.0.1 - inbox ==0.2.0 - include-file ==0.1.0.4 + - incremental ==0.3.1 - incremental-parser ==0.5.0.4 - indents ==0.5.0.1 - indexed ==0.1.3 @@ -1277,7 +1322,6 @@ default-package-overrides: - insert-ordered-containers ==0.2.5.1 - inspection-testing ==0.4.6.1 - instance-control ==0.1.2.0 - - int-cast ==0.2.0.0 - integer-logarithms ==1.0.3.1 - integer-roots ==1.0.2.0 - integration ==0.2.1 @@ -1285,13 +1329,12 @@ default-package-overrides: - interpolate ==0.2.1 - interpolatedstring-perl6 ==1.0.2 - interpolation ==0.1.1.2 + - Interpolation ==0.3.0 - IntervalMap ==0.6.1.2 - intervals ==0.9.2 - - intro ==0.9.0.0 - intset-imperative ==0.1.0.0 - - invariant ==0.5.6 + - invariant ==0.6 - invert ==1.0.0.2 - - invertible ==0.2.0.7 - invertible-grammar ==0.1.3.3 - io-machine ==0.2.0.0 - io-manager ==0.1.0.3 @@ -1299,14 +1342,14 @@ default-package-overrides: - io-region ==0.1.1 - io-storage ==0.3 - io-streams ==1.5.2.2 + - io-streams-haproxy ==1.0.1.0 + - ip ==1.7.6 - ip6addr ==1.0.3 - iproute ==1.7.12 - IPv6Addr ==2.0.5 - ipynb ==0.2 - ipython-kernel ==0.10.3.0 - irc ==0.6.1.0 - - irc-client ==1.1.2.2 - - irc-conduit ==0.3.0.5 - irc-ctcp ==0.1.3.1 - isbn ==1.1.0.4 - islink ==0.1.0.0 @@ -1314,24 +1357,32 @@ default-package-overrides: - iso639 ==0.1.0.3 - iso8601-time ==0.1.5 - isocline ==1.0.9 + - isomorphism-class ==0.1.0.7 - iterable ==3.0 + - ixset ==1.1.1.2 + - ixset-typed ==0.5.1.0 + - ixset-typed-binary-instance ==0.1.0.2 + - ixset-typed-conversions ==0.1.2.0 + - ixset-typed-hashable-instance ==0.1.0.2 - ix-shapable ==0.1.0 - - jack ==0.7.2 - jalaali ==1.0.0.0 - java-adt ==0.2018.11.4 - jira-wiki-markup ==1.4.0 + - jl ==0.1.0 + - jmacro ==0.6.17.1 - jose ==0.9 + - jose-jwt ==0.9.4 - js-chart ==2.9.4.1 - js-dgtable ==0.5.2 - js-flot ==0.8.3 - js-jquery ==3.3.1 - json ==0.10 - json-feed ==2.0.0.4 - - jsonifier ==0.2.1.1 - - jsonpath ==0.2.1.0 + - jsonifier ==0.2.1.2 + - jsonpath ==0.3.0.0 + - json-rpc ==1.0.4 - json-stream ==0.4.4.2 - JuicyPixels ==3.3.7 - - JuicyPixels-blurhash ==0.1.0.3 - JuicyPixels-extra ==0.5.2 - JuicyPixels-scale-dct ==0.1.2 - junit-xml ==0.1.0.2 @@ -1339,30 +1390,34 @@ default-package-overrides: - jwt ==0.11.0 - kan-extensions ==5.2.5 - kanji ==3.5.0 + - kansas-comet ==0.4.1 - katip ==0.8.7.2 - katip-logstash ==0.1.0.2 - - katip-wai ==0.1.2.0 + - katip-wai ==0.1.2.1 - kazura-queue ==0.1.0.4 + - kdt ==0.2.5 - keep-alive ==0.2.1.0 - keycode ==0.2.2 - keys ==3.12.3 - - ki ==0.2.0.1 + - ki ==1.0.0.1 - kind-apply ==0.3.2.1 - kind-generics ==0.4.1.4 - kind-generics-th ==0.2.2.3 + - ki-unlifted ==1.0.0.1 - kleene ==0.1 - kmeans ==0.1.3 + - knob ==0.2.1 - koji ==0.0.2 - - krank ==0.2.3 - l10n ==0.1.0.1 - labels ==0.3.3 - lackey ==2.0.0.3 - LambdaHack ==0.11.0.0 - lame ==0.2.0 + - language-avro ==0.1.4.0 - language-bash ==0.9.2 - language-c ==0.9.1 - language-c-quote ==0.13 - - language-docker ==10.4.3 + - language-docker ==12.0.0 - language-dot ==0.1.1 - language-glsl ==0.3.0 - language-java ==0.2.9 @@ -1370,12 +1425,10 @@ default-package-overrides: - language-protobuf ==1.0.1 - language-python ==0.5.8 - language-thrift ==0.12.0.1 - - lapack ==0.5 - lapack-carray ==0.0.3 - lapack-comfort-array ==0.0.1 - lapack-ffi ==0.0.3 - lapack-ffi-tools ==0.1.3 - - lapack-hmatrix ==0.0.0.1 - largeword ==1.2.5 - latex ==0.1.0.4 - lattices ==2.0.3 @@ -1387,75 +1440,75 @@ default-package-overrides: - leancheck ==0.9.12 - leancheck-instances ==0.0.5 - leapseconds-announced ==2017.1.0.1 - - learn-physics ==0.6.5 - - lens ==5.0.1 + - leb128-cereal ==1.2 + - lens ==5.1.1 - lens-action ==0.2.6 - - lens-aeson ==1.1.3 + - lens-aeson ==1.2.2 - lens-csv ==0.1.1.0 - lens-family ==2.1.2 - lens-family-core ==2.1.2 - lens-family-th ==0.5.2.1 - lens-misc ==0.0.2.0 - - lens-process ==0.4.0.0 - lens-properties ==4.11.1 - lens-regex ==0.1.3 - lens-regex-pcre ==1.1.0.0 - - lentil ==1.5.4.0 + - lentil ==1.5.4.2 - LetsBeRational ==1.0.0.0 - leveldb-haskell ==0.6.5 - lexer-applicative ==2.1.0.2 - libBF ==0.6.5.1 - - libffi ==0.1 + - libffi ==0.2.1 - libgit ==0.3.1 - libgraph ==1.14 - libmpd ==0.10.0.0 - liboath-hs ==0.0.1.2 - libyaml ==0.1.2 - - LibZip ==1.0.1 - lifted-async ==0.10.2.3 - lifted-base ==0.2.3.12 - lift-generics ==0.2.1 - - lift-type ==0.1.0.1 + - lift-type ==0.1.1.1 - line ==4.0.1 - linear ==1.21.10 - - linear-base ==0.1.0 - - linear-circuit ==0.1.0.4 - - linebreak ==1.1.0.1 + - linear-base ==0.3.0 + - linear-generics ==0.2 + - linebreak ==1.1.0.2 - linenoise ==0.3.2 - linux-capabilities ==0.1.1.0 - linux-file-extents ==0.2.0.0 - linux-namespaces ==0.1.3.0 - List ==0.6.2 - - ListLike ==4.7.7 + - ListLike ==4.7.8 - list-predicate ==0.1.0.1 - listsafe ==0.1.0.1 - - list-singleton ==2.0.0.2 - list-t ==1.0.5.3 - list-transformer ==1.0.9 - ListTree ==0.2.3 - ListZipper ==1.2.0.2 - literatex ==0.2.0.2 - - little-rio ==0.2.2 - - llvm-hs-pure ==9.0.0 + - little-logger ==1.0.1 + - little-rio ==1.0.1 - lmdb ==0.2.5 - load-env ==0.2.1.0 - - loc ==0.1.3.16 + - loc ==0.1.4.0 - locators ==0.3.0.3 - loch-th ==0.2.2 - lockfree-queue ==0.2.4 - log-domain ==0.13.2 - logfloat ==0.13.4 + - logger-thread ==0.1.0.2 - logging ==3.0.5 + - logging-effect ==1.3.13 - logging-facade ==0.3.1 - logging-facade-syslog ==1 - - logict ==0.7.1.0 + - logict ==0.8.0.0 - logstash ==0.1.0.3 - loop ==0.3.0 - lpeg ==1.0.3 - lrucache ==1.2.0.1 - lrucaching ==0.3.3 - - lua ==2.1.0 + - lua ==2.2.1 - lua-arbitrary ==1.0.1 + - lucid2 ==0.0.20221012 - lucid ==2.11.1 - lucid-cdn ==0.2.2.0 - lucid-extras ==0.2.2 @@ -1468,14 +1521,16 @@ default-package-overrides: - lzma-conduit ==1.2.3 - machines ==0.7.3 - magic ==1.1 - - magico ==0.0.2.3 - mainland-pretty ==0.7.1 - main-tester ==0.2.0.1 - managed ==1.0.9 - mandrill ==0.5.6.0 + - map-syntax ==0.3 - markdown ==0.1.17.5 - markdown-unlit ==0.5.1 - markov-chain ==0.0.3.4 + - markov-chain-usage-model ==0.0.0 + - mason ==0.2.5 - massiv ==1.0.2.0 - massiv-io ==1.0.0.1 - massiv-persist ==1.0.0.3 @@ -1491,20 +1546,23 @@ default-package-overrides: - matrix-market-attoparsec ==0.1.1.3 - matrix-static ==0.3 - maximal-cliques ==0.1.1 - - mbox ==0.3.4 - - mbox-utility ==0.0.3.1 - - mbtiles ==0.6.0.0 - - mcmc ==0.6.2.2 + - mcmc ==0.8.0.1 - mcmc-types ==1.0.3 - median-stream ==0.7.0.0 - med-module ==0.1.2.2 - megaparsec ==9.2.2 - megaparsec-tests ==9.2.2 - mega-sdist ==0.4.2.1 - - memory ==0.16.0 + - membership ==0.0.1 + - memcache ==0.3.0.1 + - memfd ==1.0.1.0 + - memory ==0.17.0 - MemoTrie ==0.6.10 - - mercury-api ==0.1.0.2 - - mergeless ==0.3.0.0 + - mergeful ==0.3.0.0 + - mergeful-persistent ==0.1.0.0 + - mergeless ==0.4.0.0 + - mergeless-persistent ==0.1.0.0 + - merkle-tree ==0.1.1 - mersenne-random ==1.0.0.1 - mersenne-random-pure64 ==0.2.2.0 - messagepack ==0.5.5 @@ -1512,7 +1570,7 @@ default-package-overrides: - mfsolve ==0.3.2.1 - microaeson ==0.1.0.1 - microlens ==0.4.12.0 - - microlens-aeson ==2.4.1 + - microlens-aeson ==2.5.0 - microlens-contra ==0.1.0.2 - microlens-ghc ==0.4.13.2 - microlens-mtl ==0.2.0.2 @@ -1523,17 +1581,19 @@ default-package-overrides: - microstache ==1.0.2.2 - midair ==0.2.0.1 - midi ==0.2.2.3 - - midi-alsa ==0.2.1 + - midi-music-box ==0.0.1.2 - mighty-metropolis ==2.0.0 - mime-mail ==0.5.1 - mime-mail-ses ==0.4.3 - - mime-types ==0.1.1.0 + - mime-types ==0.1.0.9 - minimal-configuration ==0.1.4 - minimorph ==0.3.0.1 - minio-hs ==1.6.0 + - minisat-solver ==0.1 - miniutter ==0.5.1.2 - min-max-pqueue ==0.1.0.2 - mintty ==0.1.4 + - misfortune ==0.1.2.1 - missing-foreign ==0.1.1 - MissingH ==1.5.0.1 - mixed-types-num ==0.5.11 @@ -1541,7 +1601,7 @@ default-package-overrides: - mmark ==0.0.7.6 - mmark-cli ==0.0.5.1 - mmark-ext ==0.2.1.5 - - mmorph ==1.1.5 + - mmorph ==1.2.0 - mnist-idx ==0.1.3.1 - mnist-idx-conduit ==0.4.0.0 - mockery ==0.3.5 @@ -1552,21 +1612,24 @@ default-package-overrides: - modular ==0.1.0.8 - monad-chronicle ==1.0.1 - monad-control ==1.0.3.1 - - monad-control-aligned ==0.0.1.1 - monad-coroutine ==0.9.2 - monad-extras ==0.6.0 - monadic-arrays ==0.2.2 - monad-journal ==0.8.1 - monadlist ==0.0.2 + - monadloc ==0.7.1 - monad-logger ==0.3.37 + - monad-logger-aeson ==0.4.0.2 - monad-logger-json ==0.1.0.0 - monad-logger-logstash ==0.2.0.2 - monad-logger-prefix ==0.1.12 - monad-loops ==0.4.3 - monad-memo ==0.5.4 + - monad-metrics ==0.2.2.0 - monadoid ==0.0.3 + - monadology ==0.1 - monad-par ==0.3.5 - - monad-parallel ==0.7.2.5 + - monad-parallel ==0.8 - monad-par-extras ==0.3.3 - monad-peel ==0.2.1.2 - monad-primitive ==0.1 @@ -1574,6 +1637,7 @@ default-package-overrides: - MonadPrompt ==1.0.0.5 - MonadRandom ==0.5.3 - monad-resumption ==0.1.4.0 + - monad-schedule ==0.1.2.0 - monad-skeleton ==0.2 - monad-st ==0.2.4.1 - monads-tf ==0.1.0.3 @@ -1583,28 +1647,37 @@ default-package-overrides: - monoid-extras ==0.6.1 - monoid-subclasses ==1.1.3 - monoid-transformer ==0.0.4 - - monomer ==1.3.0.0 + - monomer ==1.5.0.0 - mono-traversable ==1.0.15.3 - mono-traversable-instances ==0.1.1.0 - mono-traversable-keys ==0.2.0 - more-containers ==0.2.2.2 - - morpheus-graphql-tests ==0.18.0 + - morpheus-graphql ==0.27.0 + - morpheus-graphql-app ==0.27.0 + - morpheus-graphql-client ==0.27.0 + - morpheus-graphql-code-gen ==0.27.0 + - morpheus-graphql-code-gen-utils ==0.27.0 + - morpheus-graphql-core ==0.27.0 + - morpheus-graphql-server ==0.27.0 + - morpheus-graphql-subscriptions ==0.27.0 + - morpheus-graphql-tests ==0.27.0 - moss ==0.2.0.1 - mountpoints ==1.0.2 - mpi-hs ==0.7.2.0 - mpi-hs-binary ==0.1.1.0 - mpi-hs-cereal ==0.1.0.0 + - mstate ==0.2.8 - mtl-compat ==0.2.2 - mtl-prelude ==2.0.3.1 - multiarg ==0.30.0.10 - multi-containers ==0.2 - multimap ==1.2.1 - - multipart ==0.2.1 - multiset ==0.3.4.3 - multistate ==0.8.0.4 - murmur3 ==1.0.5 - murmur-hash ==0.1.0.10 - MusicBrainz ==0.4.1 + - mustache ==2.4.1 - mutable-containers ==0.3.4.1 - mwc-probability ==2.3.1 - mwc-random ==0.15.0.2 @@ -1632,9 +1705,10 @@ default-package-overrides: - netlib-carray ==0.1 - netlib-comfort-array ==0.0.0.2 - netlib-ffi ==0.1.1 + - net-mqtt ==0.8.2.4 + - net-mqtt-lens ==0.1.1.0 - netpbm ==1.0.4 - netrc ==0.2.0.0 - - nettle ==0.3.0 - netwire ==5.0.3 - netwire-input ==0.0.7 - netwire-input-glfw ==0.0.11 @@ -1646,15 +1720,14 @@ default-package-overrides: - network-ip ==0.3.0.3 - network-messagepack-rpc ==0.1.2.0 - network-messagepack-rpc-websocket ==0.1.1.1 + - network-multicast ==0.3.2 + - Network-NineP ==0.4.7.2 - network-run ==0.2.4 - network-simple ==0.4.5 - network-simple-tls ==0.4 - - network-transport ==0.5.4 - - network-transport-composed ==0.2.1 - - network-transport-tcp ==0.8.1 - - network-transport-tests ==0.3.1 + - network-transport ==0.5.6 - network-uri ==2.6.4.1 - - network-wait ==0.1.2.0 + - network-wait ==0.2.0.0 - newtype ==0.2.2.0 - newtype-generics ==0.6.2 - nfc ==0.1.1 @@ -1664,7 +1737,7 @@ default-package-overrides: - nix-paths ==1.0.1 - NoHoed ==0.1.1 - nonce ==1.0.7 - - nondeterminism ==1.4 + - nondeterminism ==1.5 - non-empty ==0.3.3 - nonempty-containers ==0.3.4.4 - nonemptymap ==0.0.6.0 @@ -1672,8 +1745,8 @@ default-package-overrides: - nonempty-vector ==0.2.1.0 - nonempty-zipper ==1.0.0.4 - non-negative ==0.1.2 + - normaldistribution ==1.1.0.3 - normalization-insensitive ==2.0.2 - - not-gloss ==0.7.7.0 - no-value ==1.0.0.0 - nowdoc ==0.1.1.0 - nqe ==0.6.4 @@ -1689,21 +1762,24 @@ default-package-overrides: - NumInstances ==1.4 - numtype-dk ==0.5.0.3 - nuxeo ==0.3.2 - - nvim-hs ==2.2.0.3 + - nvim-hs ==2.3.1.0 + - nvim-hs-contrib ==2.0.0.1 + - nvim-hs-ghcid ==2.0.0.0 + - oauthenticated ==0.3.0.0 - ObjectName ==1.1.0.2 + - oblivious-transfer ==0.1.0 - ochintin-daicho ==0.3.4.2 - - o-clock ==1.2.1.1 - - oeis ==0.3.10 + - o-clock ==1.3.0 - ofx ==0.4.4.0 - old-locale ==1.0.0.7 - old-time ==1.1.0.3 - once ==0.4 - - one-liner ==2.0 + - one-liner ==2.1 - one-liner-instances ==0.1.3.0 - OneTuple ==0.3.1 - Only ==0.1 - oo-prototypes ==0.1.0.0 - - opaleye ==0.9.3.2 + - opaleye ==0.9.6.1 - OpenAL ==1.7.0.5 - openapi3 ==3.2.2 - open-browser ==0.2.1.0 @@ -1713,10 +1789,11 @@ default-package-overrides: - openpgp-asciiarmor ==0.1.2 - opensource ==0.1.1.0 - openssl-streams ==1.2.3.0 - - opentelemetry ==0.7.0 - - opentelemetry-extra ==0.7.0 - - opentelemetry-lightstep ==0.7.0 - - opentelemetry-wai ==0.7.0 + - opentelemetry ==0.8.0 + - opentelemetry-extra ==0.8.0 + - opentelemetry-lightstep ==0.8.0 + - opentelemetry-wai ==0.8.0 + - open-witness ==0.6 - operational ==0.2.4.1 - operational-class ==0.3.0.0 - opml-conduit ==0.9.0.0 @@ -1728,14 +1805,14 @@ default-package-overrides: - optima ==0.4.0.3 - optional-args ==1.0.2 - options ==1.2.1.1 - - optparse-applicative ==0.16.1.0 + - optparse-applicative ==0.17.0.0 - optparse-enum ==1.0.0.0 - optparse-generic ==1.4.8 - optparse-simple ==0.1.1.4 - optparse-text ==0.1.1.0 - OrderedBits ==0.0.2.0 - ordered-containers ==0.2.3 - - ormolu ==0.3.1.0 + - ormolu ==0.5.0.1 - overhang ==1.0.0 - packcheck ==0.6.0 - pager ==0.1.1.0 @@ -1743,13 +1820,14 @@ default-package-overrides: - pagure ==0.1.1 - pagure-cli ==0.2.1 - palette ==0.3.0.2 - - pandoc ==2.17.1.1 + - pandoc ==2.19.2 - pandoc-csv2table ==1.0.9 - pandoc-dhall-decoder ==0.1.0.1 - pandoc-lua-marshal ==0.1.7 - - pandoc-plot ==1.4.1 + - pandoc-plot ==1.5.5 - pandoc-throw ==0.1.0.0 - pandoc-types ==1.22.2.1 + - pango ==0.13.8.2 - pantry ==0.5.7 - parallel ==3.2.2.0 - parallel-io ==0.3.5 @@ -1765,7 +1843,7 @@ default-package-overrides: - partial-handler ==1.0.3 - partial-isomorphisms ==0.2.3.0 - partial-order ==0.2.0.0 - - partial-semigroup ==0.5.1.14 + - partial-semigroup ==0.6.0.0 - password ==3.0.2.0 - password-instances ==3.0.0.0 - password-types ==1.0.0.0 @@ -1779,33 +1857,34 @@ default-package-overrides: - path-io ==1.7.0 - path-like ==0.2.0.2 - path-pieces ==0.2.1 + - path-text-utf8 ==0.0.1.10 - pathtype ==0.8.1.1 - path-utils ==0.1.1.0 - pathwalk ==0.3.1.2 - pattern-arrows ==0.0.2 - pava ==0.1.1.4 + - pcf-font ==0.2.2.1 - pcg-random ==0.1.3.7 - pcre2 ==2.1.1.1 - pcre-heavy ==1.0.0.3 - pcre-light ==0.4.1.0 - pcre-utils ==0.1.8.2 - pdc ==0.1.1 - - pdfinfo ==1.5.4 - pdf-toolbox-content ==0.1.1 - pdf-toolbox-core ==0.1.1 - pdf-toolbox-document ==0.1.2 - peano ==0.1.0.1 + - pedersen-commitment ==0.2.0 - pem ==0.2.4 - percent-format ==0.0.2 - peregrin ==0.3.3 - - perf ==0.9.0 - - perfect-hash-generator ==0.2.0.6 + - perfect-hash-generator ==1.0.0 - persist ==0.1.1.5 - persistent ==2.13.3.5 - persistent-discover ==0.1.0.6 - persistent-documentation ==0.1.0.4 + - persistent-iproute ==0.2.5 - persistent-mongoDB ==2.13.0.1 - - persistent-mtl ==0.4.0.0 - persistent-mysql ==2.13.1.3 - persistent-pagination ==0.1.1.2 - persistent-postgresql ==2.13.5.0 @@ -1815,13 +1894,14 @@ default-package-overrides: - persistent-sqlite ==2.13.1.0 - persistent-template ==2.12.0.0 - persistent-test ==2.13.1.2 + - persistent-typed-db ==0.1.0.7 - pg-harness-client ==0.6.0 - pgp-wordlist ==0.1.0.3 - pg-transact ==0.3.2.0 - phantom-state ==0.2.1.2 - phatsort ==0.5.0.1 - picosat ==0.1.6 - - pid1 ==0.1.3.0 + - pid1 ==0.1.3.1 - pinch ==0.4.2.0 - pipes ==4.3.16 - pipes-attoparsec ==0.5.1.5 @@ -1832,18 +1912,20 @@ default-package-overrides: - pipes-fastx ==0.3.0.0 - pipes-fluid ==0.6.0.1 - pipes-group ==1.0.12 - - pipes-http ==1.0.6 - pipes-mongodb ==0.1.0.0 - pipes-ordered-zip ==1.2.1 - pipes-parse ==3.0.9 - pipes-random ==1.0.0.5 - pipes-safe ==2.3.4 + - pipes-text ==1.0.1 - pipes-wai ==3.2.0 - - pkgtreediff ==0.5.0 + - pkgtreediff ==0.6.0 - place-cursor-at ==1.0.1 - placeholders ==0.1 - plaid ==0.1.0.4 - - plotlyhs ==0.2.1 + - plot ==0.2.3.11 + - plotlyhs ==0.2.3 + - Plural ==0.0.2 - pointed ==5.0.4 - pointedlist ==0.6.1 - pointless-fun ==1.1.0.8 @@ -1852,36 +1934,33 @@ default-package-overrides: - poly-arity ==0.1.0 - polynomials-bernstein ==1.1.2 - polyparse ==1.13 - - polysemy ==1.6.0.0 + - polysemy ==1.7.1.0 - polysemy-extra ==0.2.1.0 - polysemy-fs ==0.1.0.0 - - polysemy-fskvstore ==0.1.1.0 - polysemy-kvstore ==0.1.3.0 - polysemy-methodology ==0.2.2.0 - - polysemy-path ==0.2.1.0 - - polysemy-plugin ==0.4.1.1 + - polysemy-plugin ==0.4.3.1 - polysemy-several ==0.1.1.0 - - polysemy-socket ==0.0.2.0 - - polysemy-uncontrolled ==0.1.1.1 - - polysemy-video ==0.2.0.1 - - polysemy-vinyl ==0.1.5.0 - polysemy-webserver ==0.2.1.1 + - polysemy-zoo ==0.8.1.0 + - pontarius-xmpp ==0.5.6.5 - pooled-io ==0.0.2.2 + - portable-lines ==0.1 - port-utils ==0.2.1.0 - posix-paths ==0.3.0.0 + - posix-pty ==0.2.2 - possibly ==1.0.0.0 - postgres-options ==0.2.0.0 - - postgresql-binary ==0.12.5 + - postgresql-binary ==0.13.1 - postgresql-libpq ==0.9.4.3 - postgresql-libpq-notify ==0.2.0.0 - postgresql-migration ==0.2.1.6 - - postgresql-orm ==0.5.1 - - postgresql-query ==3.9.0 + - postgresql-query ==3.10.0 - postgresql-schema ==0.1.14 - - postgresql-simple ==0.6.5 + - postgresql-simple ==0.6.4 - postgresql-simple-url ==0.2.1.0 - postgresql-syntax ==0.4.1 - - postgresql-typed ==0.6.2.1 + - postgresql-typed ==0.6.2.2 - post-mess-age ==0.2.1.0 - pptable ==0.3.0.0 - pqueue ==1.4.3.0 @@ -1894,20 +1973,20 @@ default-package-overrides: - pretty-hex ==1.1 - prettyprinter ==1.7.1 - prettyprinter-ansi-terminal ==1.1.3 + - prettyprinter-combinators ==0.1.1 - prettyprinter-compat-annotated-wl-pprint ==1.1 - prettyprinter-compat-ansi-wl-pprint ==1.0.2 - prettyprinter-compat-wl-pprint ==1.0.1 - prettyprinter-convert-ansi-wl-pprint ==1.1.2 - pretty-relative-time ==0.3.0.0 - pretty-show ==1.10 - - pretty-simple ==4.0.0.0 + - pretty-simple ==4.1.2.0 - pretty-sop ==0.2.0.3 - pretty-terminal ==0.1.0.0 - pretty-types ==0.4.0.0 - primes ==0.2.1.0 - primitive ==0.7.3.0 - primitive-addr ==0.1.0.2 - - PrimitiveArray ==0.10.1.1 - primitive-extras ==0.10.1.5 - primitive-offset ==0.2.0.0 - primitive-unaligned ==0.1.1.2 @@ -1918,6 +1997,7 @@ default-package-overrides: - process-extras ==0.7.4 - product-profunctors ==0.11.0.3 - profiterole ==0.1 + - profiteur ==0.4.6.1 - profunctors ==5.6.2 - projectroot ==0.2.0.1 - project-template ==0.2.1.0 @@ -1930,8 +2010,6 @@ default-package-overrides: - prospect ==0.1.0.0 - protobuf ==0.2.1.3 - protobuf-simple ==0.1.1.1 - - protocol-buffers ==2.4.17 - - protocol-buffers-descriptor ==2.4.17 - protocol-radius ==0.0.1.1 - protocol-radius-test ==0.1.0.1 - proto-lens ==0.7.1.2 @@ -1946,21 +2024,21 @@ default-package-overrides: - psql-helpers ==0.1.0.0 - psqueues ==0.2.7.3 - pthread ==0.2.1 + - ptr ==0.16.8.4 - ptr-poker ==0.1.2.8 - pulse-simple ==0.1.14 - pureMD5 ==2.1.4 - purescript-bridge ==0.14.0.0 - pusher-http-haskell ==2.1.0.12 - pvar ==1.0.0.0 - - PyF ==0.10.2.0 + - pwstore-fast ==2.4.4 + - PyF ==0.11.1.0 - qchas ==1.1.0.1 - qm-interpolated-string ==0.3.1.0 - qrcode-core ==0.9.5 - qrcode-juicypixels ==0.8.3 - quadratic-irrational ==0.1.1 - QuasiText ==0.1.2.6 - - queue-sheet ==0.7.0.2 - - quickbench ==1.0.1 - QuickCheck ==2.14.2 - quickcheck-arbitrary-adt ==0.3.1.0 - quickcheck-assertions ==0.3.0 @@ -1971,6 +2049,7 @@ default-package-overrides: - quickcheck-io ==0.2.0 - quickcheck-simple ==0.1.1.1 - quickcheck-special ==0.1.0.6 + - quickcheck-state-machine ==0.7.1 - quickcheck-text ==0.1.2.1 - quickcheck-transformer ==0.3.1.1 - quickcheck-unicode ==1.0.1.0 @@ -1988,20 +2067,21 @@ default-package-overrides: - random-bytestring ==0.1.4 - random-fu ==0.3.0.0 - random-shuffle ==0.0.4 - - random-source ==0.3.0.11 - random-tree ==0.6.0.5 - range ==0.3.0.2 + - ranged-list ==0.1.2.0 - Ranged-sets ==0.4.0 + - ranges ==0.2.4 - range-set-list ==0.1.3.1 - rank1dynamic ==0.4.1 - - rank2classes ==1.4.4 + - rank2classes ==1.4.6 - Rasterific ==0.7.5.4 - rasterific-svg ==0.3.3.2 - ratel ==2.0.0.4 - - rate-limit ==1.4.2 - ratel-wai ==2.0.0.1 + - ratio-int ==0.1.2 - rattle ==0.2 - - rattletrap ==11.2.4 + - rattletrap ==11.2.14 - Rattus ==0.5.0.1 - rawfilepath ==1.0.1 - rawstring-qm ==0.2.3.0 @@ -2009,30 +2089,30 @@ default-package-overrides: - rcu ==0.2.6 - rdtsc ==1.3.0.1 - re2 ==0.3 - - readable ==0.3.1 + - reactive-banana ==1.3.1.0 - read-editor ==0.1.0.2 - read-env-var ==1.0.0.0 - reanimate-svg ==0.13.0.1 - - rebase ==1.15.0.3 + - rebase ==1.16.1 + - rec-def ==0.2 - record-dot-preprocessor ==0.2.15 - record-hasfield ==1.0 - - records-sop ==0.1.1.0 - - record-wrangler ==0.1.1.0 - rec-smallarray ==0.1.0.0 - recursion-schemes ==5.2.2.2 + - recv ==0.0.0 - redact ==0.4.0.0 - reddit-scrape ==0.0.1 - - redis-io ==1.1.0 - redis-resp ==1.0.0 - reducers ==3.12.4 - refact ==0.3.0.2 - ref-fd ==0.5 - - refined ==0.6.3 + - refined ==0.8 - reflection ==2.1.6 - reform ==0.2.7.5 - reform-blaze ==0.2.4.4 - reform-hamlet ==0.0.5.3 - reform-happstack ==0.2.5.5 + - reform-hsp ==0.2.7.2 - RefSerialize ==0.4.0 - ref-tf ==0.5.0.1 - regex ==1.1.0.2 @@ -2046,30 +2126,35 @@ default-package-overrides: - regex-posix-clib ==2.7 - regex-tdfa ==1.3.2 - regex-with-pcre ==1.1.0.2 + - registry ==0.3.3.4 + - registry-aeson ==0.2.3.3 + - registry-hedgehog ==0.7.2.0 + - registry-hedgehog-aeson ==0.2.0.0 + - registry-options ==0.1.0.0 - reinterpret-cast ==0.1.0 - - rel8 ==1.3.1.0 + - rel8 ==1.4.0.0 + - relapse ==1.0.0.1 - reliable-io ==0.0.2 - - relude ==1.0.0.1 + - relude ==1.1.0.0 - renderable ==0.2.0.1 - reorder-expression ==0.1.0.0 - repa ==3.4.1.5 + - repa-algorithms ==3.4.1.5 - repa-io ==3.4.1.2 - replace-attoparsec ==1.4.5.0 - replace-megaparsec ==1.4.5.0 - repline ==0.4.2.0 - - req ==3.10.0 + - req ==3.13.0 - req-conduit ==1.0.1 - - require ==0.4.11 - - rerebase ==1.15.0.3 - - reroute ==0.6.0.0 - - rescue ==0.4.2.1 - - resistor-cube ==0.0.1.4 + - rerebase ==1.16.1 + - reroute ==0.7.0.0 - resolv ==0.1.2.0 - resource-pool ==0.2.3.2 - resourcet ==1.2.6 - result ==0.2.6.0 - retry ==0.9.3.0 - rev-state ==0.1.2 + - rex ==0.6.2 - rfc1751 ==0.1.3 - rfc5051 ==0.2 - rg ==1.4.0.0 @@ -2077,7 +2162,7 @@ default-package-overrides: - riak-protobuf ==0.25.0.0 - rio ==0.1.22.0 - rio-orphans ==0.1.2.0 - - rio-prettyprint ==0.1.2.0 + - rio-prettyprint ==0.1.3.0 - rng-utils ==0.3.1 - roc-id ==0.1.0.0 - rocksdb-haskell ==1.0.1 @@ -2085,20 +2170,26 @@ default-package-overrides: - rocksdb-query ==0.4.2 - roles ==0.2.1.0 - rollbar ==1.1.3 - - rope-utf16-splay ==0.3.2.0 - rosezipper ==0.2 - rot13 ==0.2.0.1 - rpmbuild-order ==0.4.10 - rpm-nvr ==0.1.2 - rp-tree ==0.7.1 + - rrb-vector ==0.1.1.0 - RSA ==2.4.1 + - rss ==3000.2.0.7 - rss-conduit ==0.6.0.1 + - run-haskell-module ==0.0.2 - runmemo ==1.0.0.1 + - run-st ==0.1.1.0 - rvar ==0.3.0.1 - s3-signer ==0.5.0.0 - safe ==0.3.19 - - safe-coloured-text ==0.1.0.0 - - safe-coloured-text-terminfo ==0.0.0.0 + - safe-coloured-text ==0.2.0.1 + - safe-coloured-text-gen ==0.0.0.1 + - safe-coloured-text-layout ==0.0.0.0 + - safe-coloured-text-layout-gen ==0.0.0.0 + - safe-coloured-text-terminfo ==0.1.0.0 - safecopy ==0.10.4.2 - safe-decimal ==0.2.1.0 - safe-exceptions ==0.1.7.3 @@ -2108,19 +2199,19 @@ default-package-overrides: - safe-json ==1.1.3.1 - safe-money ==0.9.1 - SafeSemaphore ==0.10.1 - - salak ==0.3.6 - - salak-yaml ==0.3.5.3 - - saltine ==0.1.1.1 - salve ==2.0.0.1 - sample-frame ==0.0.3 - sample-frame-np ==0.0.4.1 - sampling ==0.3.5 - - sandwich ==0.1.1.2 + - sandi ==0.5 + - sandwich ==0.1.2.0 + - sandwich-hedgehog ==0.1.1.0 - sandwich-quickcheck ==0.1.0.6 - sandwich-slack ==0.1.1.0 + - sandwich-webdriver ==0.1.2.0 - say ==0.1.0.1 - - sbp ==4.1.6 - - sbv ==8.17 + - sbp ==4.9.0 + - sbv ==9.0 - scalpel ==0.6.2.1 - scalpel-core ==0.6.2.1 - scanf ==0.1.0.0 @@ -2128,14 +2219,19 @@ default-package-overrides: - scheduler ==2.0.0.1 - SciBaseTypes ==0.1.1.0 - scientific ==0.3.7.0 - - scotty ==0.12 + - scientist ==0.0.0.0 + - scotty ==0.12.1 - scrypt ==0.5.0 - - sdl2 ==2.5.3.0 + - sdl2 ==2.5.4.0 + - sdl2-gfx ==0.3.0.0 + - sdl2-image ==2.1.0.0 + - sdl2-mixer ==1.2.0.0 - sdl2-ttf ==2.1.3 - search-algorithms ==0.3.2 - secp256k1-haskell ==0.6.1 - securemem ==0.1.10 - selda ==0.5.2.0 + - selda-json ==0.1.1.1 - selda-sqlite ==0.1.7.2 - selections ==0.3.0.0 - selective ==0.5 @@ -2144,11 +2240,12 @@ default-package-overrides: - semialign-optics ==1.2 - semigroupoid-extras ==5 - semigroupoids ==5.3.7 - - semigroups ==0.19.2 + - semigroups ==0.20 - semirings ==0.6 - semiring-simple ==1.0.0.1 - semver ==0.4.0.1 - sendfile ==0.7.11.4 + - sendgrid-v3 ==1.0.0.0 - seqalign ==0.2.0.4 - seqid ==0.6.2 - seqid-streams ==0.7.2 @@ -2164,6 +2261,7 @@ default-package-overrides: - servant-auth-swagger ==0.2.10.1 - servant-auth-wordpress ==1.0.0.2 - servant-blaze ==0.9.1 + - servant-cassava ==0.10.2 - servant-checked-exceptions ==2.2.0.1 - servant-checked-exceptions-core ==2.2.0.1 - servant-client ==0.19 @@ -2174,6 +2272,7 @@ default-package-overrides: - servant-exceptions ==0.2.1 - servant-exceptions-server ==0.2.1 - servant-foreign ==0.15.4 + - servant-http-streams ==0.18.4 - servant-JuicyPixels ==0.3.1.0 - servant-lucid ==0.9.0.5 - servant-machines ==0.15.1 @@ -2182,6 +2281,7 @@ default-package-overrides: - servant-multipart-client ==0.12.1 - servant-openapi3 ==2.0.1.5 - servant-pipes ==0.15.3 + - servant-rate-limit ==0.2.0.0 - servant-rawm ==1.0.0.0 - servant-ruby ==0.9.0.0 - servant-server ==0.19.2 @@ -2194,7 +2294,10 @@ default-package-overrides: - servant-websockets ==2.0.0 - servant-xml ==1.0.1.4 - serversession ==1.0.3 + - serversession-backend-persistent ==2.0.1 + - serversession-backend-redis ==1.0.5 - serversession-frontend-wai ==1.0.1 + - serversession-frontend-yesod ==1.0.1 - servius ==1.2.3.0 - ses-html ==0.4.0.0 - set-cover ==0.1.1 @@ -2208,7 +2311,9 @@ default-package-overrides: - shake ==0.19.7 - shake-language-c ==0.12.0 - shake-plus ==0.3.4.0 + - shake-plus-extended ==0.4.1.0 - shakespeare ==2.0.30 + - shakespeare-text ==1.1.0 - shared-memory ==0.2.0.0 - ShellCheck ==0.8.0 - shell-conduit ==5.0.0 @@ -2216,6 +2321,7 @@ default-package-overrides: - shellmet ==0.0.4.1 - shelltestrunner ==1.9 - shell-utility ==0.1 + - shellwords ==0.1.3.1 - shelly ==1.10.0 - shikensu ==0.4.1 - should-not-typecheck ==2.1.0 @@ -2224,10 +2330,9 @@ default-package-overrides: - signal ==0.1.0.4 - silently ==1.2.5.3 - simple-affine-space ==0.1.1 - - simple-cabal ==0.1.3 + - simple-cabal ==0.1.3.1 - simple-cmd ==0.2.7 - simple-cmd-args ==0.1.8 - - simple-log ==0.9.12 - simple-media-timestamp ==0.2.1.0 - simple-media-timestamp-attoparsec ==0.1.0.0 - simple-media-timestamp-formatting ==0.1.1.0 @@ -2237,34 +2342,28 @@ default-package-overrides: - since ==0.0.0 - singleton-bool ==0.1.6 - singleton-nats ==0.4.6 - - singletons ==3.0.2 - - singletons-base ==3.0 + - singletons ==3.0.1 + - singletons-base ==3.1 - singletons-presburger ==0.6.1.0 - - singletons-th ==3.0 - - siphash ==1.0.3 + - singletons-th ==3.1 - Sit ==0.2022.3.18 - sitemap-gen ==0.1.0.0 - - sized ==1.0.0.1 + - size-based ==0.1.3.1 + - sized ==1.0.0.2 - skein ==1.0.9.4 - skews ==0.1.0.3 - skip-var ==0.1.1.0 - - skylighting ==0.12.3.1 - - skylighting-core ==0.12.3.1 + - skylighting ==0.13.1.2 + - skylighting-core ==0.13.1.2 + - skylighting-format-ansi ==0.1 + - skylighting-format-blaze-html ==0.1.1 + - skylighting-format-latex ==0.1 - slack-progressbar ==0.1.0.1 - - slave-thread ==1.1.0.1 - - slist ==0.2.1.0 - - slynx ==0.6.1.1 + - slave-thread ==1.1.0.2 + - slynx ==0.7.0.1 - smallcheck ==1.2.1 - - smash ==0.1.3 - - smash-microlens ==0.1.0.2 - smtp-mail ==0.3.0.0 - - snap-blaze ==0.2.1.5 - - snap-core ==1.0.5.0 - - snappy ==0.2.0.2 - snowflake ==0.1.1.1 - - soap ==0.2.3.6 - - soap-openssl ==0.1.0.2 - - soap-tls ==0.1.1.4 - socket ==0.8.3.0 - socks ==0.6.1 - solana-staking-csvs ==0.1.2.0 @@ -2273,24 +2372,25 @@ default-package-overrides: - sop-core ==0.5.0.2 - sort ==1.0.0.0 - sorted-list ==0.2.1.0 - - sound-collage ==0.2.1 - sourcemap ==0.1.7 - sox ==0.2.3.1 - - soxlib ==0.0.3.1 - spacecookie ==1.0.0.2 - sparse-linear-algebra ==0.3.1 - - spatial-math ==0.5.0.1 + - spdx ==1.0.0.3 - special-values ==0.1.0.0 - speculate ==0.4.14 - speedy-slice ==0.3.2 - Spintax ==0.3.6 - splice ==0.6.1.1 - - splint ==1.0.2.1 - split ==0.2.3.5 - splitmix ==0.1.0.4 - - splitmix-distributions ==0.9.0.0 - - split-record ==0.1.1.4 + - splitmix-distributions ==1.0.0 + - Spock ==0.14.0.0 - Spock-api ==0.14.0.0 + - Spock-api-server ==0.14.0.0 + - Spock-core ==0.14.0.1 + - Spock-lucid ==0.4.0.1 + - Spock-worker ==0.3.1.0 - spoon ==0.3.1 - spreadsheet ==0.1.3.8 - sqlcli ==0.2.2.0 @@ -2301,19 +2401,19 @@ default-package-overrides: - srcloc ==0.6.0.1 - srt ==0.1.2.0 - srt-attoparsec ==0.1.0.0 - - srt-dhall ==0.1.0.0 - srt-formatting ==0.1.0.0 - stache ==2.3.3 + - stack ==2.9.1 - stack-all ==0.4.0.1 - stack-clean-old ==0.4.6 - - stackcollapse-ghc ==0.0.1.4 - stack-templatizer ==0.1.0.2 - state-codes ==0.1.3 - stateref ==0.3 + - statestack ==0.3.1 - StateVar ==1.2.2 - stateWriter ==0.3.0 - static-text ==0.2.0.7 - - statistics ==0.16.1.0 + - statistics ==0.16.1.2 - status-notifier-item ==0.3.1.0 - stb-image-redux ==0.2.1.2 - step-function ==0.2 @@ -2327,7 +2427,6 @@ default-package-overrides: - stm-lifted ==2.5.0.0 - STMonadTrans ==0.4.6 - stm-split ==0.0.2.1 - - stm-supply ==0.2.0.0 - stopwatch ==0.1.0.6 - storable-complex ==0.2.3.0 - storable-endian ==0.2.6.1 @@ -2337,28 +2436,32 @@ default-package-overrides: - store ==0.7.16 - store-core ==0.4.4.4 - store-streaming ==0.2.0.3 + - stratosphere ==0.60.0 - Stream ==0.4.7.2 - streaming ==0.2.3.1 - streaming-attoparsec ==1.0.0.1 - streaming-bytestring ==0.2.4 - streaming-cassava ==0.2.0.0 - streaming-commons ==0.2.2.5 + - streaming-wai ==0.1.1 - streamly ==0.8.1.1 - - streamly-bytestring ==0.1.4 - - streams ==3.3 + - streams ==3.3.1 - streamt ==0.5.0.1 - strict ==0.4.0.1 + - strict-base-types ==0.7 - strict-concurrency ==0.2.4.3 + - strict-lens ==0.4.0.2 - strict-list ==0.1.7 - strict-tuple ==0.1.5.2 - - strict-tuple-lens ==0.2 - strict-wrapper ==0.0.0.0 + - stringable ==0.1.3 - stringbuilder ==0.5.1 - string-class ==0.1.7.0 - string-combinators ==0.6.0.5 - string-conv ==0.2.0 - string-conversions ==0.4.0.1 - string-interpolate ==0.3.1.2 + - stringprep ==1.0.0 - string-qq ==0.0.4 - string-random ==0.1.4.3 - stringsearch ==0.3.6.6 @@ -2368,12 +2471,12 @@ default-package-overrides: - stripe-signature ==1.0.0.14 - stripe-wreq ==1.0.1.14 - strive ==6.0.0.4 - - strong-path ==1.1.4.0 + - strongweak ==0.3.2 - structs ==0.1.6 - structured ==0.1.1 - structured-cli ==2.7.0.1 + - stylish-haskell ==0.14.3.0 - subcategories ==0.2.0.0 - - sum-type-boilerplate ==0.1.1 - sundown ==0.6 - superbuffer ==0.3.1.2 - svg-builder ==0.1.1 @@ -2382,14 +2485,29 @@ default-package-overrides: - swagger2 ==2.8.6 - swish ==0.10.2.0 - syb ==0.7.2.2 + - syb-with-class ==0.6.1.14 + - sydtest ==0.13.0.0 + - sydtest-aeson ==0.1.0.0 + - sydtest-amqp ==0.1.0.0 + - sydtest-autodocodec ==0.0.0.0 - sydtest-discover ==0.0.0.2 + - sydtest-hedgehog ==0.3.0.1 + - sydtest-hedis ==0.0.0.0 + - sydtest-hspec ==0.3.0.2 + - sydtest-mongo ==0.0.0.0 + - sydtest-persistent ==0.0.0.1 + - sydtest-persistent-postgresql ==0.2.0.2 + - sydtest-persistent-sqlite ==0.2.0.2 + - sydtest-process ==0.0.0.0 + - sydtest-rabbitmq ==0.1.0.0 + - sydtest-servant ==0.2.0.2 + - sydtest-typed-process ==0.0.0.0 + - sydtest-wai ==0.2.0.0 + - sydtest-yesod ==0.3.0.1 - symbol ==0.2.4 - symengine ==0.1.2.0 - symmetry-operations-symbols ==0.0.2.1 - - synthesizer-alsa ==0.5.0.6 - synthesizer-core ==0.8.2.1 - - synthesizer-dimensional ==0.8.1 - - synthesizer-midi ==0.6.1.1 - sysinfo ==0.1.1 - system-argv0 ==0.1.1 - systemd ==2.3.0 @@ -2397,7 +2515,6 @@ default-package-overrides: - system-filepath ==0.4.14 - system-info ==0.5.2 - tabular ==0.2.2.8 - - tagchup ==0.4.1.1 - tagged ==0.8.6.1 - tagged-binary ==0.2.0.1 - tagged-identity ==0.1.3 @@ -2412,14 +2529,15 @@ default-package-overrides: - tardis ==0.4.4.0 - tasty ==1.4.2.3 - tasty-ant-xml ==1.1.8 + - tasty-autocollect ==0.3.2.0 - tasty-bench ==0.3.2 - - tasty-dejafu ==2.0.0.9 - - tasty-discover ==4.2.4 + - tasty-dejafu ==2.1.0.0 + - tasty-discover ==4.2.2 - tasty-expected-failure ==0.12.3 - tasty-fail-fast ==0.0.3 - tasty-focus ==1.0.1 - tasty-golden ==2.3.5 - - tasty-hedgehog ==1.1.0.0 + - tasty-hedgehog ==1.3.1.0 - tasty-hslua ==1.0.2 - tasty-hspec ==1.2.0.1 - tasty-html ==0.4.1.4 @@ -2438,36 +2556,41 @@ default-package-overrides: - tasty-test-reporter ==0.1.1.4 - tasty-th ==0.1.7 - tasty-wai ==0.1.2.0 - - TCache ==0.12.1 - tce-conf ==1.3 - tcp-streams ==1.0.1.1 - tdigest ==0.2.1.1 - teardown ==0.5.0.1 - - telegram-bot-simple ==0.4.5 + - telegram-bot-simple ==0.6 + - template ==0.2.0.10 - template-haskell-compat-v0208 ==0.1.9.1 - temporary ==1.3 - temporary-rc ==1.2.0.3 - temporary-resourcet ==0.1.0.1 - tensorflow-test ==0.1.0.0 - tensors ==0.1.5 - - termbox ==0.3.0 + - termbox ==1.1.0.1 + - termbox-banana ==1.0.0 + - termbox-bindings-c ==0.1.0 + - termbox-bindings-hs ==0.1.0 + - termbox-tea ==0.1.0 - terminal-progress-bar ==0.4.1 - terminal-size ==0.3.3 - - termonad ==4.2.0.1 + - termonad ==4.4.0.0 - test-framework ==0.8.2.0 - test-framework-hunit ==0.3.0.2 - test-framework-leancheck ==0.0.4 - test-framework-quickcheck2 ==0.3.0.5 - test-framework-smallcheck ==0.2 - test-fun ==0.1.0.0 + - testing-feat ==1.1.1.1 - testing-type-modifiers ==0.1.0.1 - - texmath ==0.12.4 - - text-ansi ==0.1.1 + - texmath ==0.12.5.4 + - text-ansi ==0.2.1 - text-binary ==0.2.1.1 - - text-builder ==0.6.6.5 - - text-builder-dev ==0.2.1 + - text-builder ==0.6.7 + - text-builder-dev ==0.3.3 - text-conversions ==0.3.1.1 - - text-icu ==0.7.1.0 + - text-icu ==0.8.0.2 - text-latin1 ==0.3.1 - text-ldap ==0.1.1.14 - textlocal ==0.1.0.5 @@ -2475,19 +2598,20 @@ default-package-overrides: - text-metrics ==0.3.2 - text-postgresql ==0.0.3.1 - text-printer ==0.5.0.2 - - text-regex-replace ==0.1.1.4 - - text-rope ==0.1 + - text-regex-replace ==0.1.1.5 + - text-rope ==0.2 - text-short ==0.1.5 - - text-show ==3.9.7 - - text-show-instances ==3.8.6 - - text-zipper ==0.11 + - text-show ==3.10 + - text-show-instances ==3.9.2 + - text-zipper ==0.12 - tfp ==1.0.2 - tf-random ==0.5 - th-abstraction ==0.4.5.0 - th-bang-compat ==0.0.1.0 - th-compat ==0.1.4 - th-constraint-compat ==0.0.1.0 - - th-desugar ==1.12 + - th-data-compat ==0.1.1.0 + - th-desugar ==1.13.1 - th-env ==0.1.1 - these ==1.1.1.1 - these-lens ==1.0.1.2 @@ -2495,7 +2619,7 @@ default-package-overrides: - these-skinny ==0.7.5 - th-expand-syns ==0.4.10.0 - th-extras ==0.0.0.6 - - th-lego ==0.3.0.1 + - th-lego ==0.3.0.2 - th-lift ==0.8.2 - th-lift-instances ==0.1.20 - th-nowq ==0.1.0.5 @@ -2504,16 +2628,19 @@ default-package-overrides: - thread-hierarchy ==0.3.0.2 - thread-local-storage ==0.2 - threads ==0.5.1.7 + - threads-extras ==0.1.0.3 - thread-supervisor ==0.2.0.0 - th-reify-compat ==0.0.1.5 - th-reify-many ==0.1.10 - through-text ==0.1.0.0 - th-strict-compat ==0.1.0.1 - - th-test-utils ==1.1.1 + - th-test-utils ==1.2.1 - th-utilities ==0.2.5.0 - - tidal ==1.7.10 + - tidal ==1.9.2 + - tidal-link ==1.0.1 - tile ==0.3.0.0 - time-compat ==1.9.6.1 + - time-domain ==0.1.0.1 - timeit ==2.0 - timelens ==0.2.0.2 - time-lens ==0.4.0.2 @@ -2521,35 +2648,39 @@ default-package-overrides: - time-locale-vietnamese ==1.0.0.0 - time-manager ==0.0.0 - time-parsers ==0.1.2.1 - - timerep ==2.0.1.0 - - timers-tick ==0.5.0.1 - - timer-wheel ==0.3.0 + - timerep ==2.1.0.0 + - timers-tick ==0.5.0.2 + - timer-wheel ==0.4.0.1 - timespan ==0.4.0.0 - time-units ==1.0.0 + - time-units-types ==0.2.0.1 - timezone-olson ==0.2.1 - timezone-olson-th ==0.1.0.11 - timezone-series ==0.1.13 - - tinylog ==0.15.0 - titlecase ==1.0.1 - tldr ==0.9.2 - tls ==1.5.8 - tls-debug ==0.4.8 - tls-session-manager ==0.0.4 - - tlynx ==0.6.1.1 + - tlynx ==0.7.0.1 - tmapchan ==0.0.3 - tmapmvar ==0.0.4 - tmp-postgres ==1.34.1.0 - - tmp-proc ==0.5.1.2 + - tmp-proc ==0.5.1.3 + - tmp-proc-postgres ==0.5.2.2 + - tmp-proc-rabbitmq ==0.5.1.2 + - tmp-proc-redis ==0.5.1.2 + - toml-reader ==0.2.0.0 - tophat ==1.0.5.1 - topograph ==1.0.0.2 + - torrent ==10000.1.1 - torsor ==0.1 - tostring ==0.2.1.1 - tracing ==0.0.7.3 - tracing-control ==0.0.7.3 - transaction ==0.1.1.3 - transformers-base ==0.4.6 - - transformers-bifunctors ==0.1 - - transformers-compat ==0.6.6 + - transformers-compat ==0.7.2 - transformers-either ==0.1.2 - transformers-fix ==1.0 - transient ==0.7.0.0 @@ -2562,8 +2693,7 @@ default-package-overrides: - triplesec ==0.2.2.1 - trivial-constraint ==0.7.0.0 - tsv2csv ==0.1.0.2 - - ttc ==1.1.1.1 - - ttl-hashtables ==1.4.1.0 + - ttc ==1.2.0.0 - ttrie ==0.1.2.2 - tuple ==0.3.0.2 - tuples ==0.1.0.0 @@ -2574,30 +2704,32 @@ default-package-overrides: - twitter-conduit ==0.6.1 - twitter-types ==0.11.0 - twitter-types-lens ==0.11.0 - - TypeCompose ==0.9.14 + - typecheck-plugin-nat-simple ==0.1.0.7 - typed-process ==0.2.10.1 + - typed-uuid ==0.2.0.0 - type-equality ==1 - - type-errors ==0.2.0.0 - - type-errors-pretty ==0.0.1.2 + - type-errors ==0.2.0.1 - type-fun ==0.1.3 - type-hint ==0.1 - type-level-integers ==0.0.1 - - type-level-kv-list ==1.1.0 + - type-level-kv-list ==2.0.0 - type-level-natural-number ==2.0 - type-level-numbers ==0.1.1.2 - - typelits-witnesses ==0.4.0.0 - type-map ==0.1.7.0 - type-natural ==1.1.0.1 - typenums ==0.1.4 - type-of-html ==1.6.2.0 - type-of-html-static ==0.1.0.2 - type-operators ==0.2.0.0 + - type-rig ==0.1 - type-spec ==0.4.0.0 - typography-geometry ==1.0.1.0 - tz ==0.1.3.6 - - tzdata ==0.2.20221028.0 + - tzdata ==0.2.20221129.0 + - tztime ==0.1.0.0 - ua-parser ==0.7.7.0 - uglymemo ==0.1.0.1 + - ulid ==0.3.2.0 - unagi-chan ==0.4.1.4 - unbounded-delays ==0.1.1.1 - unbound-generics ==0.4.2 @@ -2607,6 +2739,7 @@ default-package-overrides: - unconstrained ==0.1.0.2 - unexceptionalio ==0.5.1 - unexceptionalio-trans ==0.5.1 + - unfork ==1.0.0.0 - unicode ==0.0.1.1 - unicode-collation ==0.1.3.3 - unicode-data ==0.3.1 @@ -2630,27 +2763,28 @@ default-package-overrides: - universe-instances-extended ==1.1.3 - universe-reverse-instances ==1.1.1 - universe-some ==1.2.1 - - universum ==1.7.3 + - universum ==1.8.1 - unix-bytestring ==0.3.7.8 - unix-compat ==0.5.4 - unix-time ==0.4.8 + - unjson ==0.15.4 - unliftio ==0.2.23.0 - unliftio-core ==0.2.0.1 - unliftio-path ==0.0.2.0 - unliftio-pool ==0.2.2.0 - unliftio-streams ==0.1.1.1 - unlit ==0.4.0.0 - - unordered-containers ==0.2.17.0 + - unordered-containers ==0.2.19.1 - unsafe ==0.0 - urbit-hob ==0.3.3 - uri-bytestring ==0.3.3.1 - uri-bytestring-aeson ==0.1.0.8 - uri-encode ==1.5.0.7 - url ==2.1.3 + - userid ==0.1.3.7 - users ==0.5.0.0 - users-postgresql-simple ==0.5.0.2 - users-test ==0.5.0.1 - - utf8-light ==0.4.2 - utf8-string ==1.0.2 - utility-ht ==0.0.16 - uuid ==1.3.15 @@ -2659,8 +2793,11 @@ default-package-overrides: - valida-base ==0.2.0 - validate-input ==0.5.0.0 - validation ==1.1.2 + - validationt ==0.3.0 - validity ==0.12.0.1 + - validity-aeson ==0.2.0.5 - validity-bytestring ==0.4.1.1 + - validity-case-insensitive ==0.0.0.0 - validity-containers ==0.5.0.4 - validity-path ==0.4.0.1 - validity-persistent ==0.0.0.0 @@ -2686,26 +2823,27 @@ default-package-overrides: - vector-builder ==0.3.8.4 - vector-bytes-instances ==0.1.1 - vector-circular ==0.1.4 + - vector-extras ==0.2.7.1 - vector-instances ==3.4 - vector-mmap ==0.0.3 - vector-rotcev ==0.1.0.1 - vector-sized ==1.5.0 - vector-space ==0.16 - vector-split ==1.0.0.2 + - vector-stream ==0.1.0.0 - vector-th-unbox ==0.2.2 - - vectortiles ==1.5.1 - verbosity ==0.4.0.0 - versions ==5.0.4 - vformat ==0.14.1.0 - vformat-time ==0.1.0.0 - ViennaRNAParser ==1.3.3 - - vinyl ==0.13.3 + - vinyl ==0.14.3 - vinyl-loeb ==0.0.1.0 - vivid ==0.5.2.0 - vivid-osc ==0.5.0.0 - vivid-supercollider ==0.4.1.2 - void ==0.7.3 - - vty ==5.33 + - vty ==5.37 - wai ==3.2.3 - wai-app-static ==3.1.7.4 - wai-cli ==0.2.3 @@ -2713,32 +2851,35 @@ default-package-overrides: - wai-cors ==0.2.7 - wai-enforce-https ==1.0.0.0 - wai-eventsource ==3.0.0 - - wai-extra ==3.1.12.1 + - wai-extra ==3.1.13.0 - wai-feature-flags ==0.1.0.4 - wai-handler-launch ==3.0.3.1 - wai-logger ==2.4.0 + - wai-middleware-bearer ==1.0.3 - wai-middleware-caching ==0.1.0.2 - wai-middleware-caching-lru ==0.1.0.0 - wai-middleware-caching-redis ==0.2.0.0 - wai-middleware-clacks ==0.1.0.1 - wai-middleware-delegate ==0.1.3.1 + - wai-middleware-metrics ==0.2.4 - wai-middleware-prometheus ==1.0.0.1 - wai-middleware-static ==0.9.2 - - wai-rate-limit ==0.2.0.0 + - wai-rate-limit ==0.3.0.0 - wai-rate-limit-redis ==0.2.0.1 - - wai-saml2 ==0.2.1.3 + - wai-saml2 ==0.3.0.1 - wai-session ==0.3.3 - wai-session-postgresql ==0.2.1.3 - wai-session-redis ==0.1.0.5 - wai-slack-middleware ==0.2.0 - - wai-transformers ==0.1.0 - wai-websockets ==3.0.1.2 - wakame ==0.1.0.0 - - warp ==3.3.21 - - warp-tls ==3.3.2 + - warp ==3.3.23 + - warp-tls ==3.3.4 - warp-tls-uid ==0.2.0.6 - wave ==0.2.0 - wcwidth ==0.0.2 + - webby ==1.1.0 + - webdriver ==0.10.0.0 - webex-teams-api ==0.2.0.1 - webex-teams-conduit ==0.2.0.1 - webgear-core ==1.0.4 @@ -2750,33 +2891,29 @@ default-package-overrides: - web-routes-boomerang ==0.28.4.3 - web-routes-happstack ==0.23.12.2 - web-routes-hsp ==0.24.6.2 + - web-routes-th ==0.22.7 - web-routes-wai ==0.24.3.2 - webrtc-vad ==0.1.0.3 - websockets ==0.12.7.3 - - websockets-simple ==0.2.0 - weigh ==0.0.16 - - wide-word ==0.1.1.2 - - wikicfp-scraper ==0.1.0.12 - - wild-bind ==0.1.2.8 - - wild-bind-x11 ==0.2.0.14 + - wide-word ==0.1.3.0 - Win32 ==2.12.0.1 - Win32-notify ==0.3.0.3 - windns ==0.1.0.1 - - wire-streams ==0.1.1.0 - - witch ==1.0.2.0 -with-compiler: ghc-9.0.2 + - witch ==1.1.5.0 +with-compiler: ghc-9.2.5 - withdependencies ==0.3.0 - witherable ==0.4.2 - within ==0.2.0.1 - with-location ==0.1.0 - with-utf8 ==1.0.2.3 - - witness ==0.5 + - witness ==0.6.1 - wizards ==1.0.3 - wl-pprint ==1.2.1 - wl-pprint-annotated ==0.1.0.1 - - wl-pprint-console ==0.1.0.2 - wl-pprint-text ==1.2.0.2 - word8 ==0.1.3 + - word-compat ==0.0.6 - wordpress-auth ==1.0.0.1 - word-trie ==0.3.0 - word-wrap ==0.5 @@ -2788,7 +2925,7 @@ with-compiler: ghc-9.0.2 - writer-cps-mtl ==0.1.1.6 - writer-cps-transformers ==0.5.6.1 - wss-client ==0.3.0.0 - - wuss ==1.1.19 + - wuss ==2.0.0.2 - X11 ==1.10.3 - X11-xft ==0.3.4 - x11-xim ==0.0.9.0 @@ -2800,23 +2937,24 @@ with-compiler: ghc-9.0.2 - xdg-basedir ==0.2.2 - xdg-desktop-entry ==0.1.1.1 - xdg-userdirs ==0.1.0.2 - - xeno ==0.5 - - xlsx ==0.8.4 + - xeno ==0.6 + - xlsx ==1.0.0.1 - xlsx-tabular ==0.2.2.1 - xml ==1.3.14 - xml-basic ==0.1.3.1 - - xmlbf ==0.6.1 - - xmlbf-xeno ==0.2 + - xmlbf ==0.6.2 + - xmlbf-xeno ==0.2.1 - xmlbf-xmlhtml ==0.2 - xml-conduit ==1.9.1.1 - xml-conduit-writer ==0.1.1.2 - xmlgen ==0.6.2.2 - xml-hamlet ==0.5.0.2 - xml-helpers ==1.0.0 - - xmlhtml ==0.2.5.2 + - xmlhtml ==0.2.5.3 - xml-html-qq ==0.1.0.1 - xml-indexed-cursor ==0.1.1.0 - - xml-parser ==0.1.1 + - xml-lens ==0.3.1 + - xml-parser ==0.1.1.1 - xml-picklers ==0.3.6 - xml-to-json-fast ==2.0.0 - xml-types ==0.3.8 @@ -2824,11 +2962,11 @@ with-compiler: ghc-9.0.2 - xmonad-contrib ==0.17.1 - xmonad-extras ==0.17.0 - xor ==0.0.1.1 - - xss-sanitize ==0.3.7 + - xss-sanitize ==0.3.7.1 - xxhash-ffi ==0.2.0.0 - yaml ==0.11.8.0 - - yamlparse-applicative ==0.2.0.1 - - yaml-unscrambler ==0.1.0.9 + - yaml-unscrambler ==0.1.0.12 + - Yampa ==0.13.7 - yarn-lock ==0.6.5 - yeshql-core ==4.2.0.0 - yesod ==1.6.2.1 @@ -2840,6 +2978,7 @@ with-compiler: ghc-9.0.2 - yesod-bin ==1.6.2.2 - yesod-core ==1.6.24.0 - yesod-eventsource ==1.6.0.1 + - yesod-fb ==0.6.1 - yesod-form ==1.7.3 - yesod-form-bootstrap4 ==3.0.1 - yesod-gitrepo ==0.3.0 @@ -2860,22 +2999,20 @@ with-compiler: ghc-9.0.2 - yjsvg ==0.2.0.1 - yjtools ==0.9.18 - yoga ==0.0.0.5 - - youtube ==0.2.1.1 - - zenacy-html ==2.0.4 - - zenacy-unicode ==1.0.1 - - zero ==0.1.5 + - zenacy-html ==2.0.7 + - zenacy-unicode ==1.0.2 - zeromq4-haskell ==0.8.0 - zeromq4-patterns ==0.3.1.0 + - zigzag ==0.0.1.0 - zim-parser ==0.2.1.0 - zio ==0.1.0.2 - zip ==1.7.2 - zip-archive ==0.4.2.2 - zipper-extra ==0.1.3.2 - zippers ==0.3.2 - - zip-stream ==0.2.1.0 + - zip-stream ==0.2.2.0 - zlib ==0.6.3.0 - zlib-bindings ==0.1.1.5 - - zlib-lens ==0.1.2.1 - zot ==0.0.3 - zstd ==0.1.3.0 - ztail ==1.2.0.3 diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml index 64bfa3ad87..90f7301870 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml @@ -6,6 +6,7 @@ dont-distribute-packages: - 4Blocks - AC-Vector-Fancy + - ADPfusion - ADPfusionForest - ADPfusionSet - AERN-Net @@ -33,15 +34,21 @@ dont-distribute-packages: - BerlekampAlgorithm - BioHMM - Biobase + - BiobaseBlast - BiobaseDotP + - BiobaseENA - BiobaseEnsembl - BiobaseFR3D + - BiobaseFasta - BiobaseHTTP - BiobaseHTTPTools - BiobaseInfernal - BiobaseMAF - BiobaseTrainingData + - BiobaseTurner + - BiobaseTypes - BiobaseVienna + - BiobaseXNA - BirdPP - Bitly - BlastHTTP @@ -52,6 +59,7 @@ dont-distribute-packages: - CC-delcont-alt - CMCompare - CPBrainfuck + - CSPM-FiringRules - CSPM-Interpreter - CSPM-ToProlog - CSPM-cspm @@ -69,10 +77,13 @@ dont-distribute-packages: - DMuCheck - DOM - DP + - DRBG + - DSA - DSH - DSTM - Dangerous - DarcsHelpers + - DeepArrow - DefendTheKing - DifferenceLogic - DisTract @@ -85,7 +96,6 @@ dont-distribute-packages: - Dust-tools-pcap - DysFRP-Cairo - DysFRP-Craftwerk - - EdisonCore - EditTimeReport - EntrezHTTP - EsounD @@ -94,6 +104,7 @@ dont-distribute-packages: - Eternal10Seconds - Etherbunny - EventSocket + - Extra - FComp - FM-SBLEX - FTPLine @@ -101,7 +112,6 @@ dont-distribute-packages: - FailureT - FermatsLastMargin - FieldTrip - - FilePather - Fin - Finance-Treasury - FiniteMap @@ -123,8 +133,8 @@ dont-distribute-packages: - GPipe-Collada - GPipe-Examples - GPipe-GLFW + - GPipe-GLFW4 - GPipe-TextureLoad - - Gamgine - GeBoP - GenI - GenSmsPdu @@ -142,9 +152,9 @@ dont-distribute-packages: - GrowlNotify - Gtk2hsGenerics - GtkGLTV + - GtkTV - GuiHaskell - GuiTV - - H - HAppS-Data - HAppS-IxSet - HAppS-Server @@ -176,6 +186,7 @@ dont-distribute-packages: - HPhone - HPlot - HPong + - HQu - HROOT - HROOT-graf - HROOT-hist @@ -189,7 +200,6 @@ dont-distribute-packages: - HStringTemplateHelpers - HTab - HXMPP - - HaMinitel - HaRe - HaTeX-meta - HaTeX-qq @@ -222,6 +232,7 @@ dont-distribute-packages: - IORefCAS - IndexedList - InfixApplicative + - InternedData - JSON-Combinator - JSON-Combinator-Examples - Javasf @@ -239,7 +250,6 @@ dont-distribute-packages: - LambdaINet - LambdaPrettyQuote - LambdaShell - - Lambdaya - Lattices - LinearSplit - LinkChecker @@ -255,18 +265,16 @@ dont-distribute-packages: - MFlow - MIP-glpk - MSQueue + - MagicHaskeller - MailchimpSimple - Map - - MaybeT-transformers - MetaObject - Metrics - Mhailist - Michelangelo - MicrosoftTranslator - MissingPy - - MonadCatchIO-mtl - MonadCatchIO-mtl-foreign - - MonadCatchIO-transformers-foreign - MonadLab - Monaris - Monatron-IO @@ -276,8 +284,9 @@ dont-distribute-packages: - MuCheck-QuickCheck - MuCheck-SmallCheck - MutationOrder - - NXT + - NGLess - NaperianNetCDF + - NaturalLanguageAlphabets - NearContextAlgebra - Ninjas - NoSlow @@ -288,7 +297,6 @@ dont-distribute-packages: - Nomyx-Web - NonEmptyList - Nussinov78 - - OSM - OnRmt - OpenAFP-Utils - OpenGLCheck @@ -298,7 +306,10 @@ dont-distribute-packages: - PageIO - Paillier - Paraiso + - Parallel-Arrows-BaseSpec - Parallel-Arrows-Eden + - Parallel-Arrows-Multicore + - Parallel-Arrows-ParMonad - PermuteEffects - Plot-ho-matic - PlslTools @@ -309,10 +320,12 @@ dont-distribute-packages: - Pup-Events-Demo - Quelea - RESTng + - RJson - RMP - RNAFold - RNAFoldProgs - RNAdesign + - RNAdraw - RNAlien - RNAwolf - Ranka @@ -337,13 +350,17 @@ dont-distribute-packages: - Shellac-haskeline - Shellac-readline - ShortestPathProblems + - Shpadoinkle - Shpadoinkle-backend-pardiff + - Shpadoinkle-backend-snabbdom - Shpadoinkle-backend-static - Shpadoinkle-developer-tools - Shpadoinkle-disembodied - Shpadoinkle-examples - Shpadoinkle-html + - Shpadoinkle-lens - Shpadoinkle-router + - Shpadoinkle-streaming - Shpadoinkle-template - Shpadoinkle-widgets - SimpleGL @@ -351,6 +368,7 @@ dont-distribute-packages: - SimpleServer - Smooth - Snusmumrik + - SoOSiM - SoccerFun - SoccerFunGL - SourceGraph @@ -358,7 +376,9 @@ dont-distribute-packages: - SpinCounter - StockholmAlignment - Strafunski-Sdf2Haskell + - SybWidget - SyntaxMacros + - TV - Taxonomy - TaxonomyTools - TeX-my-math @@ -370,9 +390,9 @@ dont-distribute-packages: - TypeIlluminator - UMM - URLT + - UTFTConverter - UrlDisp - - Villefort - - WAVE + - ViennaRNA-extras - WEditorBrick - WEditorHyphen - WL500gPControl @@ -385,17 +405,18 @@ dont-distribute-packages: - WebCont - Wired - WordAlignment + - Workflow - WxGeneric - XML - XMPP - XSaiga - - YACPong - Yablog - Yogurt-Standalone - Z-Botan - Z-IO - Z-MessagePack - Z-YAML + - ZipFold - a50 - abcBridge - abstract-par-accelerate @@ -420,17 +441,16 @@ dont-distribute-packages: - access-token-provider - acme-php - acme-safe - - acousticbrainz-client - activehs - actor - acts - adhoc-network - adict - - adjunction - adp-multi-monadiccp - aeson-native - affine - afv + - ag-pictgen - agda-server - agda-snippets-hakyll - agentx @@ -442,11 +462,8 @@ dont-distribute-packages: - algebra-sql - algebraic - algolia - - algorithmic-composition-additional - - algorithmic-composition-basic - - algorithmic-composition-complex - algorithmic-composition-frequency-shift - - algorithmic-composition-overtones + - align-audio - alms - alpha - alsa-gui @@ -597,7 +614,6 @@ dont-distribute-packages: - amby - ampersand - amqp-streamly - - analyze-client - anatomy - animate-example - animate-frames @@ -658,7 +674,7 @@ dont-distribute-packages: - ascii-cows - ascii-table - asic - - asif + - asil - assert4hs-hspec - assert4hs-tasty - assimp @@ -666,16 +682,16 @@ dont-distribute-packages: - astview - aterm-utils - atlassian-connect-core - - atlassian-connect-descriptor - atmos-dimensional-tf + - atom-msp430 - atomic-primops-foreign - atp - ats-format - - ats-pkg - attoparsec-enumerator - attoparsec-iteratee - attoparsec-text-enumerator - atuin + - audacity - audiovisual - aura - authoring @@ -728,7 +744,6 @@ dont-distribute-packages: - bamstats - barley - base32-bytestring - - base64-bytes - baserock-schema - basic - batchd @@ -738,11 +753,10 @@ dont-distribute-packages: - batching - battlenet-yesod - battleplace-api + - battleship-combinatorics - battleships - bayes-stack - bbi - - bcp47 - - bcp47-orphans - bdcs - bdcs-api - beam-automigrate @@ -752,9 +766,8 @@ dont-distribute-packages: - beeminder-api - bein - belka - - berp - bff - - bglib + - bidirectionalization-combined - bifunctor - billboard-parser - billeksah-forms @@ -770,7 +783,6 @@ dont-distribute-packages: - bindings-ppdev - bindynamic - binembed-example - - binrep - bioace - bioalign - biofasta @@ -790,7 +802,6 @@ dont-distribute-packages: - bitcoin-api-extra - bitcoin-block - bitcoin-compact-filters - - bitcoin-scripting - bitcoin-tx - bitcoin-types - bitcoind-regtest @@ -800,10 +811,12 @@ dont-distribute-packages: - bittorrent - bla - blakesum-demo + - blas-comfort-array - blastxml - blatex - blaze-builder-enumerator - blaze-colonnade + - blaze-html-contrib - ble - blink1 - blip @@ -813,20 +826,23 @@ dont-distribute-packages: - blubber - bluetile - blunt - - bnb-staking-csvs - bno055-haskell + - board-games - bogre-banana - boilerplate - bond - bond-haskell - bond-haskell-compiler - bookhound-format + - bookkeeper - bookkeeper-permissions - boomslang - - boopadoop + - boots-app - boots-cloud - boots-web - borel + - both + - bowntz - box-csv - box-socket - breakout @@ -835,19 +851,26 @@ dont-distribute-packages: - bricks-parsec - bricks-rendering - bricks-syntax + - brittany + - brittany_0_13_1_2 + - broadcast-chan-conduit + - broadcast-chan-pipes - bronyradiogermany-streaming - btc-lsp - btree + - btree-concurrent - buchhaltung - buildbox-tools - buildwrapper - bulletproofs - bulmex - burnt-explorer - - bus-pirate - buster-gtk - buster-network + - butcher - butterflies + - bv-sized + - bv-sized-lens - bytable - bytelog - bytepatch @@ -863,6 +886,7 @@ dont-distribute-packages: - cabal2json - cabalmdvrpm - cabalrpmdeps + - caffegraph - cake - cakyrespa - cal3d-examples @@ -871,6 +895,7 @@ dont-distribute-packages: - calculator - caldims - call + - camfort - campfire - canteven-http - cao @@ -878,6 +903,7 @@ dont-distribute-packages: - capnp - captcha-2captcha - captcha-capmonster + - captcha-core - car-pool - carboncopy - cartel @@ -896,7 +922,6 @@ dont-distribute-packages: - casr-logbook-reports-html - casr-logbook-reports-meta - casr-logbook-reports-meta-html - - cassandra-cql - cassandra-thrift - cassy - casui @@ -915,6 +940,8 @@ dont-distribute-packages: - cfipu - cflp - cfopu + - cgi-undecidable + - cgi-utils - chainweb-mining-client - chalkboard-viewer - chapelure @@ -925,21 +952,20 @@ dont-distribute-packages: - cheapskate-terminal - check-pvp - chevalier-common + - chiasma - chiasma-test - chitauri - choose-exe - chorale-geo - chp-mtl - chp-plus + - chp-spec - chp-transformers - - chr-core - chr-lang - chromatin - - chronograph - chu2 - chuchu - chunks - - ciphersaber2 - citation-resolve - citeproc-hs-pandoc-filter - clac @@ -947,31 +973,32 @@ dont-distribute-packages: - claferIG - claferwiki - clash + - clash-ghc + - clash-lib + - clash-lib-hedgehog + - clash-multisignal + - clash-prelude-hedgehog + - clash-prelude-quickcheck + - clash-shake + - clash-systemverilog + - clash-verilog + - clash-vhdl + - clashilator - classify-frog - classy-miso - - clckwrks - - clckwrks-cli - clckwrks-dot-com - - clckwrks-plugin-bugs - clckwrks-plugin-ircbot - - clckwrks-plugin-mailinglist - - clckwrks-plugin-media - - clckwrks-plugin-page - - clckwrks-plugin-redirect - - clckwrks-theme-bootstrap - - clckwrks-theme-clckwrks - - clckwrks-theme-geo-bootstrap - cless - cleveland - click-clack + - clickhouse-haskell - clifford - clippings - - clocked - cloud-haskell - cloud-seeder - cloudyfs + - clr-bindings - clua - - clustering - clustertools - clutterhs - cmathml3 @@ -981,13 +1008,13 @@ dont-distribute-packages: - co-feldspar - cobot-io - codec + - codec-libevent - codec-rpm - codemonitor - coformat - cognimeta-utils - coinbase-exchange - colada - - colchis - collapse-duplication - collection-json - collections-base-instances @@ -999,17 +1026,20 @@ dont-distribute-packages: - columbia - columnar - comark - - comic - - commodities + - comfort-array + - comfort-array-shape + - comfort-fftw + - commsec - commsec-keyexchange - comonad-random - compaREST - compact-mutable + - compact-mutable-vector + - compact-socket - compactable - compdata-automata - compdata-dags - compdata-param - - compdoc-dhall-decoder - complexity - comprehensions-ghc - compstrat @@ -1034,7 +1064,9 @@ dont-distribute-packages: - config-select - configifier - configurator-ng + - conic-graphs - constrained-category + - constrained-platform-instances - constraint - constraint-manip - constraint-reflection @@ -1047,12 +1079,8 @@ dont-distribute-packages: - continuum-client - control - control-monad-attempt - - control-monad-exception-monadsfd - - contstuff-monads-tf - - contstuff-transformers - conversions - convert - - convert-annotation - convertible-ascii - convertible-text - coordinate @@ -1061,9 +1089,8 @@ dont-distribute-packages: - copilot-frp-sketch - copilot-language - copilot-libraries + - copilot-sbv - copilot-theorem - - core-webserver-servant - - core-webserver-warp - coroutine-enumerator - coroutine-iteratee - couch-simple @@ -1077,6 +1104,7 @@ dont-distribute-packages: - cqrs-sqlite3 - cqrs-test - cqrs-testkit + - crackNum - craft - craftwerk-cairo - craftwerk-gtk @@ -1087,26 +1115,32 @@ dont-distribute-packages: - crf-chain1-constrained - crf-chain2-generic - crf-chain2-tiers + - criterion-compare - criu-rpc - crockford - cron-compat - crypto-classical - crypto-conduit - crypto-pubkey + - crypto-sodium - cryptocipher - cryptoids - cryptoids-class - cryptol - crystalfontz + - csound-catalog + - csound-controllers + - csound-expression + - csound-expression-opcodes + - csound-expression-typed + - csound-sampler - cspmchecker - csv-enumerator - ctpl - cube - cuckoo - - cursedcsv - cv-combinators - cypher - - dahdit - dapi - darcs-benchmark - darcs-beta @@ -1116,20 +1150,17 @@ dont-distribute-packages: - darkplaces-demo - darkplaces-rcon-util - dash-haskell - - data-accessor-monads-fd - data-basic - data-cycle + - data-default-extra - data-diverse-lens - - data-elf - data-layer - - data-lens-fd - - data-lens-ixset - - data-lens-template - data-object-json - data-object-yaml - data-result - data-rtuple - data-structure-inferrer + - database-id-groundhog - datadog-tracing - datafix - dataflow @@ -1142,6 +1173,7 @@ dont-distribute-packages: - dbus-client - ddate - ddc-build + - ddc-core - ddc-core-babel - ddc-core-eval - ddc-core-flow @@ -1174,9 +1206,6 @@ dont-distribute-packages: - delimiter-separated - delta - delta-h - - dep-t-advice - - dep-t-dynamic - - dep-t-value - dependent-literals-plugin - dependent-state - depends @@ -1191,6 +1220,7 @@ dont-distribute-packages: - dewdrop - dfinity-radix-tree - dhall-recursive-adt + - dhall-secret - dia-functions - diagrams-haddock - diagrams-html5 @@ -1201,11 +1231,13 @@ dont-distribute-packages: - dialog - diff - difference-monoid - - differential - digestive-functors-hsp + - dimensional-tf + - dimensions - dingo-core - dingo-example - dingo-widgets + - diohsc - diplomacy-server - direct-rocksdb - directory-contents @@ -1213,7 +1245,6 @@ dont-distribute-packages: - discogs-haskell - discord-gateway - discord-hs - - discord-register - discord-rest - disposable - distributed-fork @@ -1244,8 +1275,7 @@ dont-distribute-packages: - dmenu-pkill - dmenu-pmount - dmenu-search - - dnscache - - dobutokO-effects + - dnf-repo - dobutokO-poetry - dobutokO-poetry-general - dobutokO-poetry-general-languages @@ -1253,12 +1283,7 @@ dont-distribute-packages: - dobutokO3 - dobutokO4 - doc-review - - domain - - domain-aeson - - domain-cereal - - domain-optics - dormouse-client - - dotparse - dovetail - dovetail-aeson - dow @@ -1270,21 +1295,21 @@ dont-distribute-packages: - dph-prim-interface - dph-prim-par - dph-prim-seq - - drama - dropbox-sdk - dropsolve - dsh-sql - dsmc-tools - dtd - - dtw - - dumb-cas - dvda - dynamic-cabal - dynamic-plot - dynamic-pp - dynamodb-simple - dynobud + - easytensor + - easytensor-vulkan - ec2-unikernel + - eccrypto-ed25519-bindings - ecdsa - edenskel - edentv @@ -1292,8 +1317,8 @@ dont-distribute-packages: - edges - editable - edits + - effect-monad - effective-aspects-mzv - - eflint - egison - egison-pattern-src-haskell-mode - egison-pattern-src-th-mode @@ -1303,6 +1328,7 @@ dont-distribute-packages: - ekg-carbon - ekg-cloudwatch - ekg-wai + - elasticsearch-interchange - electrs-client - elerea-examples - elliptic-curve @@ -1311,6 +1337,7 @@ dont-distribute-packages: - email - emailparse - embroidery + - emd - engine-io-growler - engine-io-snap - engine-io-wai @@ -1324,12 +1351,25 @@ dont-distribute-packages: - enumerator-tf - enumfun - ephemeral + - erf-native - eros-client - eros-http - error-message - errors-ext - ersatz-toysat - esotericbot + - essence-of-live-coding-PortMidi + - essence-of-live-coding-gloss + - essence-of-live-coding-gloss-example + - essence-of-live-coding-gloss_0_2_7 + - essence-of-live-coding-pulse + - essence-of-live-coding-pulse-example + - essence-of-live-coding-pulse_0_2_7 + - essence-of-live-coding-quickcheck + - essence-of-live-coding-quickcheck_0_2_7 + - essence-of-live-coding-vivid + - essence-of-live-coding-warp + - essence-of-live-coding-warp_0_2_7 - estimators - estreps - eternity @@ -1340,20 +1380,25 @@ dont-distribute-packages: - ethereum-analyzer-webui - ethereum-client-haskell - ethereum-merkle-patricia-db + - eths-rlp - euphoria - - eve-cli - event-monad + - eventful-core - eventful-dynamodb + - eventful-memory - eventful-postgresql + - eventful-sql-common - eventful-sqlite + - eventful-test-helpers - eventloop - eventsource-geteventstore-store - eventsource-store-specs - eventsource-stub-store + - eventuo11y - eventuo11y-batteries - eventuo11y-json - every-bit-counts - - exception-monads-fd + - ewe - exference - exinst-aeson - exinst-bytes @@ -1363,6 +1408,7 @@ dont-distribute-packages: - exinst-serialise - exist - exist-instances + - exon - expand - expat-enumerator - expiring-containers @@ -1373,8 +1419,6 @@ dont-distribute-packages: - expressions-z3 - extemp - extended-containers-lens - - extensible-data - - external-sort - extract-dependencies - factual-api - fadno @@ -1383,11 +1427,9 @@ dont-distribute-packages: - family-tree - fast-bech32 - fastcdc + - fastcgi - fastirc - - fastly - - fastparser - fault-tree - - fay - fay-base - fay-builder - fay-dom @@ -1401,6 +1443,7 @@ dont-distribute-packages: - fay-websockets - fbrnch - fcd + - fckeditor - feature-flipper-postgres - fedora-composes - fedora-img-dl @@ -1416,17 +1459,16 @@ dont-distribute-packages: - fei-modelzoo - fei-nn - feldspar-compiler - - feldspar-language - festung - ffmpeg-tutorials - ficketed - - fields - filepath-crypto - filepath-io-access - filesystem-abstractions - filesystem-enumerator - find-clumpiness - findhttp + - finitary - finitary-derive - finitary-optics - finite-table @@ -1435,14 +1477,12 @@ dont-distribute-packages: - fix-parser-simple - fixed-point-vector - fixed-point-vector-space - - fixed-precision - fixhs - flashblast - flatbuffers - flexiwrap - flexiwrap-smallcheck - flite - - flowdock-api - flower - flowsim - fltkhs-demos @@ -1455,11 +1495,10 @@ dont-distribute-packages: - fmt-for-rio - foldable1 - follower + - fontconfig-pure - foo - - formal - format - format-status - - forml - formlets - formlets-hsp - forsyde-deep @@ -1472,6 +1511,8 @@ dont-distribute-packages: - fpnla-examples - frame-markdown - freckle-app + - freckle-app_1_8_1_0 + - free-functors - free-game - free-theorems-counterexamples - free-theorems-seq @@ -1480,7 +1521,7 @@ dont-distribute-packages: - freekick2 - freelude - freer-converse - - freetype-simple + - fresnel-fused-effects - front - frpnow-gloss - frpnow-gtk @@ -1500,12 +1541,13 @@ dont-distribute-packages: - functor-combo - funflow - funflow-nix + - fungll-combinators - funion - funnyprint - funsat + - fused-effects-squeal - fwgl-glfw - fwgl-javascript - - fxpak - g2 - g2q - gact @@ -1523,7 +1565,9 @@ dont-distribute-packages: - gelatin-gl - gelatin-sdl2 - gelatin-shaders + - gemini-router - gemini-textboard + - generic-accessors - generic-override-aeson - generics-mrsop-gdiff - genesis @@ -1539,22 +1583,23 @@ dont-distribute-packages: - genvalidity-sydtest-hashable - genvalidity-sydtest-lens - genvalidity-sydtest-persistent + - geo-uk - geodetic - geolite-csv - getemx + - gf - ghc-debug-brick - - ghc-debug-client - - ghc-debug-common - - ghc-debug-stub - ghc-imported-from - ghc-instances - ghc-mod - ghc-session - ghc-tags-plugin - ghci-pretty + - ghcjs-dom-hello - ghcjs-dom-webkit - ghcjs-fetch - ghcjs-hplay + - ghcup - ght - gi-cairo-again - gi-clutter @@ -1562,12 +1607,11 @@ dont-distribute-packages: - gi-ges - gi-gsk - gi-gstpbutils + - gi-gtk-declarative-app-simple - gi-gtk_4_0_6 - - gipeda - git-config - git-fmt - git-gpush - - git-monitor - git-object - git-remote-ipfs - git-sanity @@ -1575,6 +1619,7 @@ dont-distribute-packages: - github-webhook-handler-snap - gitlib-cross - gitlib-s3 + - gitson - givegif - gladexml-accessor - glazier @@ -1785,6 +1830,7 @@ dont-distribute-packages: - gogol-youtube-reporting - google-drive - google-mail-filters + - google-maps-geocoding - googleplus - gore-and-ash-actor - gore-and-ash-async @@ -1800,6 +1846,7 @@ dont-distribute-packages: - graflog - grammar-combinators - grapefruit-examples + - grapefruit-frp - grapefruit-records - grapefruit-ui - grapefruit-ui-gtk @@ -1817,12 +1864,17 @@ dont-distribute-packages: - graphql-client - graphtype - greencard-lib + - grenade - gridbounds - gridland - groot - gross - groundhog-converters - groundhog-inspector + - groundhog-mysql + - groundhog-postgresql + - groundhog-sqlite + - groundhog-th - grpc-etcd-client - grpc-haskell - grpc-haskell-core @@ -1833,6 +1885,7 @@ dont-distribute-packages: - gsmenu - gstorable - gtfs + - gtfs-realtime - gtk-serialized-event - gtk2hs-cast-glade - gtk2hs-cast-gnomevfs @@ -1842,7 +1895,6 @@ dont-distribute-packages: - gtkimageview - gtkrsync - guarded-rewriting - - hArduino - hOff-display - hPDB - hPDB-examples @@ -1851,18 +1903,21 @@ dont-distribute-packages: - hablog - hack-contrib - hack-contrib-press + - hack-frontend-monadcgi - hack-handler-epoll - hack-handler-evhttp - hack-handler-fastcgi + - hack-handler-happstack - hack-handler-hyena + - hack-handler-kibro - hack-handler-simpleserver - hack-middleware-cleanpath - hack-middleware-clientsession - hack-middleware-jsonp + - hack2-contrib-extra - hack2-handler-happstack-server - hack2-handler-mongrel2-http - hack2-handler-snap-server - - hackage-mirror - hackage2twitter - hackmanager - haddock @@ -1880,7 +1935,7 @@ dont-distribute-packages: - hall-symbols - halma-gui - halma-telegram-bot - - ham + - hamilton - hamusic - hans-pcap - happlets-lib-gtk @@ -1888,20 +1943,18 @@ dont-distribute-packages: - happs-hsp-template - happs-tutorial - happstack-auth - - happstack-authenticate - happstack-contrib - happstack-data - happstack-dlg - happstack-facebook + - happstack-fastcgi - happstack-fay - happstack-fay-ajax - happstack-helpers - happstack-ixset - - happstack-jmacro - happstack-plugins - happstack-state - happstack-static-routing - - happstack-yui - happybara-webkit - haquil - harg @@ -1909,6 +1962,7 @@ dont-distribute-packages: - harmony - haroonga-httpd - has-th + - hasbolt-extras - hascat - hascat-lib - hascat-setup @@ -1919,11 +1973,15 @@ dont-distribute-packages: - hask-home - haskdeep - haskeem + - haskell-admin + - haskell-admin-health + - haskell-admin-managed-functions - haskell-aliyun - haskell-bitmex-client - haskell-docs - haskell-eigen-util - haskell-ftp + - haskell-lsp - haskell-lsp-client - haskell-pdf-presenter - haskell-platform-test @@ -1945,6 +2003,7 @@ dont-distribute-packages: - haskell-tools-refactor - haskell-tools-rewrite - haskell-tor + - haskell-xmpp - haskelldb-connect-hdbc - haskelldb-connect-hdbc-catchio-mtl - haskelldb-connect-hdbc-catchio-tf @@ -1969,12 +2028,9 @@ dont-distribute-packages: - hasklepias - haskoin-bitcoind - haskoin-crypto - - haskoin-node - haskoin-protocol - haskoin-script - haskoin-store - - haskoin-store-data - - haskoin-wallet - haskoon - haskoon-httpspec - haskoon-salvia @@ -1986,16 +2042,18 @@ dont-distribute-packages: - hasktorch-indef - hasktorch-signatures - hasktorch-zoo + - haskus-binary + - haskus-system-build + - haskus-utils - haskus-utils-compat - haskus-web - haslo - hasloGUI - - hasparql-client - hasql-cursor-query - hasql-postgres - hasql-postgres-options - hasql-streams-conduit - - hasql-streams-core + - hasql-streams-example - hasql-streams-pipes - hasql-streams-streaming - hasql-streams-streamly @@ -2010,6 +2068,7 @@ dont-distribute-packages: - hatexmpp3 - hawitter - haxl-amazonka + - haxl-facebook - haxy - hback - hbayes @@ -2028,7 +2087,9 @@ dont-distribute-packages: - hdbi-postgresql - hdbi-sqlite - hdbi-tests + - hdf - hdiff + - hdigest - hdirect - hdocs - hdph @@ -2042,11 +2103,11 @@ dont-distribute-packages: - hedgehog-checkers-lens - hedgehog-gen-json - hedis-pile - - heist-aeson - helic - helics - helics-wai - helium + - hell - hellage - hellnet - hemokit @@ -2067,6 +2128,7 @@ dont-distribute-packages: - hexpat-iteratee - hfd - hfiar + - hfoil - hfractal - hgalib - hgen @@ -2082,7 +2144,6 @@ dont-distribute-packages: - hinduce-classifier - hinduce-classifier-decisiontree - hinduce-examples - - hint-server - hinvaders - hinze-streams - hipbot @@ -2100,18 +2161,20 @@ dont-distribute-packages: - hjsonschema - hjugement-cli - hlcm - - hlrdb + - hledger-api - hls - - hly + - hls-exactprint-utils - hmark - hmatrix-backprop + - hmatrix-sundials - hmeap - hmeap-utils - hmep - - hmt + - hmm-lapack - hmt-diagrams - hnormalise - ho-rewriting + - hoauth2-demo - hoauth2-providers-tutorial - hob - hogre @@ -2130,63 +2193,76 @@ dont-distribute-packages: - hoodle-render - hoovie - hoppy-docs + - hoppy-runtime + - hoppy-std + - horizon-gen-nix + - horizon-spec - hotswap - - hout - hp2any-graph - hp2any-manager - hpaco - hpaco-lib - hpage - hpaste + - hpath-directory + - hpath-io - hpc-tracer - hplayground - hpqtypes-effectful - hpqtypes-extras + - hprotoc - hprotoc-fork - hps - hps-cairo - hpython + - hq + - hquantlib - hranker - hreq-client - hreq-conduit + - hriemann - hs - hs-blake2 - hs-ffmpeg - hs-gen-iface - - hs-ix - hs-pkpass - - hs-profunctors - hs-sdl-term-emulator - hs2dot + - hsaml2 - hsautogui - hsbackup - hsbencher-codespeed - hsbencher-fusion - hsc3-auditor + - hsc3-cairo - hsc3-data + - hsc3-db + - hsc3-dot - hsc3-forth - hsc3-graphs + - hsc3-lang - hsc3-lisp - hsc3-plot + - hsc3-process + - hsc3-rec - hsc3-server - hsc3-sf-hsndfile + - hsc3-unsafe - hsc3-utils - hscassandra - - hschema-aeson - - hschema-prettyprinter - - hschema-quickcheck - hscope - hsdev + - hsexif - hsfacter - hsinspect-lsp - hslogstash - hslua-module-zip - - hsnsq + - hsndfile-storablevector - hspec-expectations-pretty - hspec-pg-transact - hspec-setup - hspec-shouldbe - - hspec-webdriver + - hspecVariant - hsprocess - hsql-mysql - hsql-odbc @@ -2200,19 +2276,18 @@ dont-distribute-packages: - hstzaar - hsubconvert - hswip - - hsx-jmacro - hsx-xhtml + - hsyslog-tcp + - htar - html-kure - - html-parse-util - htoml-parse - - hts - htsn-import - http-client-auth - http-client-rustls + - http-encodings - http-enumerator - - http-pony - - http2-client-exe - http2-client-grpc + - http2-grpc-proto-lens - http2-grpc-proto3-wire - https-everywhere-rules - https-everywhere-rules-raw @@ -2221,7 +2296,6 @@ dont-distribute-packages: - hugs2yc - hulk - hunit-gui - - hunp - hunt-searchengine - hunt-server - hurdle @@ -2229,7 +2303,6 @@ dont-distribute-packages: - huzzy - hw-all - hw-aws-sqs-conduit - - hw-kafka-avro - hw-uri - hworker-ses - hwormhole @@ -2254,15 +2327,18 @@ dont-distribute-packages: - hyena - hylotab - hyloutils + - hyper-extra + - hyper-haskell-server - hyperpublic - iException + - ice40-prim + - iconv-typed - ide-backend - ide-backend-server - ideas-math - ideas-math-types - ideas-statistics - ige-mac-integration - - ihaskell-inline-r - ihaskell-rlangqq - ihttp - imap @@ -2284,11 +2360,14 @@ dont-distribute-packages: - indentation-parsec - indentation-trifecta - indexation + - indieweb-algorithms - indigo + - inferno-core + - inferno-lsp + - inferno-vc - infernu - infinity - inline-java - - inspection-proxy - inspector-wrecker - instant-aeson - instant-bytes @@ -2296,10 +2375,13 @@ dont-distribute-packages: - instant-hashable - instant-zipper - integreat + - intel-aes - interpolatedstring-qq - interpolatedstring-qq-mwotton + - intro-prelude - introduction-test - intset + - invertible-hlist - invertible-hxt - ion - ipatch @@ -2311,6 +2393,7 @@ dont-distribute-packages: - irc-fun-client - irc-fun-color - irc-fun-messages + - iridium - ironforge - isevaluated - ismtp @@ -2322,6 +2405,8 @@ dont-distribute-packages: - iteratee-parsec - iteratee-stm - iterio-server + - iterm-show-JuicyPixels + - iterm-show-diagrams - ival - ivor - ivory-avr-atmega328p-registers @@ -2338,8 +2423,7 @@ dont-distribute-packages: - ix - iyql - j2hs - - jacinda - - jail + - java-bridge - java-bridge-extras - java-character - java-reflect @@ -2347,12 +2431,11 @@ dont-distribute-packages: - javascript-extras - javasf - jespresso - - jmacro - - jmacro-rpc - jmacro-rpc-happstack - jmacro-rpc-snap - - jmonkey - join + - jot + - jsaddle-hello - jsc - jsmw - json-ast-json-encoder @@ -2368,12 +2451,12 @@ dont-distribute-packages: - json-tokens - json2-hdbc - json2sg - - jsonlogic-aeson - jsons-to-schema - jspath - jvm - jvm-batching - jvm-streaming + - kafka-client - kafka-device - kafka-device-glut - kafka-device-joystick @@ -2387,8 +2470,6 @@ dont-distribute-packages: - kansas-lava-shake - karakuri - katip-rollbar - - keenser - - keera-hails-i18n - keera-hails-mvc-environment-gtk - keera-hails-mvc-model-lightmodel - keera-hails-mvc-model-protectedmodel @@ -2405,8 +2486,12 @@ dont-distribute-packages: - keera-hails-reactivelenses - keera-posture - keid-resource-gltf + - kerry - kevin - key-vault + - keyed-vals-hspec-tests + - keyed-vals-mem + - keyed-vals-redis - keyring - keysafe - keyvaluehash @@ -2426,7 +2511,6 @@ dont-distribute-packages: - kubernetes-client - kure-your-boilerplate - kurita - - kvitable - laborantin-hs - labsat - labyrinth @@ -2446,14 +2530,12 @@ dont-distribute-packages: - lambdacube-examples - lambdacube-gl - lambdacube-samples - - lambdatwit - lambdaya-bus - lambdiff + - landlock - lang - language-Modula2 - - language-avro - language-boogie - - language-ecmascript-analysis - language-eiffel - language-kort - language-ninja @@ -2462,6 +2544,9 @@ dont-distribute-packages: - language-python-colour - language-qux - language-spelling + - lapack + - lapack-comfort-array + - lapack-hmatrix - lat - latex-formulae-hakyll - latex-formulae-pandoc @@ -2472,10 +2557,14 @@ dont-distribute-packages: - layouting - lazy-hash - lazy-hash-cache + - lda - ldap-scim-bridge - ldapply - leaky - lean + - learn-physics + - learn-physics-examples + - learning-hmm - legion - legion-discovery - legion-discovery-client @@ -2485,9 +2574,6 @@ dont-distribute-packages: - lens-accelerate - lens-toml-parser - lens-utils - - lenz - - lenz-mtl - - lenz-template - levmar-chart - lex-applicative - lgtk @@ -2500,6 +2586,7 @@ dont-distribute-packages: - liblawless - liblinear-enumerator - libmolude + - libpafe - libraft - librato - libxml-enumerator @@ -2509,14 +2596,19 @@ dont-distribute-packages: - lighttpd-conf - lighttpd-conf-qq - linear-accelerate + - linear-circuit - linear-code + - linearEqSolver - linearmap-category - linearscan-hoopl - linkchk - linkcore + - linnet-aeson + - linnet-conduit - linux-ptrace - lio-eci11 - lio-simple + - lion - liquid-base - liquid-bytestring - liquid-containers @@ -2550,20 +2642,22 @@ dont-distribute-packages: - llvm-tools - lmonad-yesod - lnd-client - - lnurl - lnurl-authenticator - local-search - localize - locked-poll - log + - log-effect-syslog + - log-effectful + - log-elasticsearch - log-postgres - log-utils - log4hs - logging-effect-extra - - logging-facade-journald - logic-classes - lojban - lojysamban + - lol - lol-apps - lol-benches - lol-cpp @@ -2571,19 +2665,17 @@ dont-distribute-packages: - lol-tests - lol-typing - loli + - longshot - loop-effin - looper - lorentz - lostcities - loup - - lp-diagrams-svg - lrucaching-haxl - ls-usb - lsystem - - ltext - luachunk - lucid-colonnade - - lucid2-htmx - lucienne - luhn - lui @@ -2600,6 +2692,7 @@ dont-distribute-packages: - macosx-make-standalone - magic-wormhole - magicbane + - magico - mahoro - maid - mailgun @@ -2630,10 +2723,10 @@ dont-distribute-packages: - markdown-pap - markdown2svg - markov-processes + - markup - marmalade-upload - marquise - marvin - - marxup - masakazu-bot - matchers - math-programming-glpk @@ -2641,10 +2734,12 @@ dont-distribute-packages: - mathblog - mathlink - matsuri + - matterhorn - maxent - maxent-learner-hw-gui - maxsharing - mcmc-samplers + - medea - mediabus-fdk-aac - mediabus-rtp - mellon-gpio @@ -2660,11 +2755,11 @@ dont-distribute-packages: - metronome - micro-gateway - microformats2-types + - midi-alsa - midimory + - midisurface - mighttpd - - migrant-hdbc - - migrant-postgresql-simple - - migrant-sqlite-simple + - mime-string - minecraft-data - minesweeper - mini-egison @@ -2672,24 +2767,19 @@ dont-distribute-packages: - minimung - minioperational - minirotate - - mirror-tweet - miss - miss-porcelain - missing-py2 - mixed-strategies - mkbndl - mlist - - mmsyn4 - mmsyn6ukr - - mmsyn6ukr-array - mmsyn7h - - mmsyn7l - mmsyn7s - mmsyn7ukr - - mmsyn7ukr-array - - mmsyn7ukr-common - mmtl-base - moan + - mockazo - modify-fasta - modsplit - modular-prelude-classy @@ -2697,36 +2787,26 @@ dont-distribute-packages: - modulo - mole - monad-exception + - monad-http - monad-metrics-extensible - monad-state - monad-stlike-stm - - monad-unlift-ref - monadiccp-gecode - - monadology - monarch - monetdb-mapi - mongrel2-handler - monky - monte-carlo - moo - - moo-nad - moonshine - morley - morley-client - morley-prelude - morley-upgradeable - - morpheus-graphql - - morpheus-graphql-app - - morpheus-graphql-cli - - morpheus-graphql-client - - morpheus-graphql-code-gen - - morpheus-graphql-code-gen-utils - - morpheus-graphql-server - - morpheus-graphql-subscriptions + - morloc - morphisms-functors-inventory - - mortred + - mosaico-lib - motor-diagrams - - motor-reflection - mp - mp3decoder - mpdmate @@ -2738,9 +2818,14 @@ dont-distribute-packages: - mptcp-pm - mptcpanalyzer - msgpack-aeson + - msgpack-arbitrary + - msgpack-binary - msgpack-idl + - msgpack-persist - msgpack-rpc - msgpack-rpc-conduit + - msgpack-testsuite + - msi-kb-backlit - mu-avro - mu-graphql - mu-grpc-client @@ -2761,11 +2846,14 @@ dont-distribute-packages: - multihash-serialise - multilinear-io - multiplicity + - multipool-persistent + - multipool-persistent-postgresql + - multipool-postgresql-simple - multirec-alt-deriver - multirec-binary - multisetrewrite + - multivariant - murder - - murmur - murmurhash3 - mushu - music-graphics @@ -2786,19 +2874,19 @@ dont-distribute-packages: - mxnet-examples - mxnet-nn - myTestlll + - mybitcoin-sci - mysnapsession-example - mysql-haskell - mysql-haskell-nem - mysql-haskell-openssl - mysql-simple-typed - - mywork + - mywatch - n2o-web - nakadi-client - named-servant-client - named-servant-server - nats-queue - natural-number - - neko-obfs - nemesis-titan - nerf - nero-wai @@ -2808,10 +2896,13 @@ dont-distribute-packages: - net-spider-pangraph - net-spider-rpl - net-spider-rpl-cli + - netcore + - netlib-comfort-array - netlines - netstring-enumerator - nettle-frp - nettle-netkit + - nettle-openflow - network-anonymous-i2p - network-anonymous-tor - network-connection @@ -2827,22 +2918,24 @@ dont-distribute-packages: - network-uri-json - network-websocket - neural + - neuron - newsletter-mailgun - newsynth - - ngrams-loader - ngx-export-tools-extra - nikepub - nirum - nix-thunk - nkjp - nlp-scores-scripts + - nom - nomyx-api - nomyx-core - nomyx-language - nomyx-library - nomyx-server - nonlinear-optimization-backprop - - notmuch-haskell + - not-gloss + - not-gloss-examples - notmuch-web - now-haskell - nri-env-parser @@ -2852,6 +2945,8 @@ dont-distribute-packages: - nri-postgresql - nri-redis - nri-test-encoding + - numerals-base + - numeric-ode - numerical - numhask-hedgehog - numhask-range @@ -2860,9 +2955,8 @@ dont-distribute-packages: - nyan-interpolation - nyan-interpolation-simple - nymphaea - - oanda-rest-api - oath - - obd + - oauth2-jwt-bearer - obdd - oberon0 - obj @@ -2874,22 +2968,29 @@ dont-distribute-packages: - oculus - odd-jobs - off-simple - - ohloh-hs + - ogma-cli + - ogma-core + - ogma-language-fret-cs + - ogma-language-fret-reqs - ois-input-manager - olwrapper + - om-fork + - om-http - om-kubernetes - om-legion + - om-logging + - om-socket - online - online-csv - opc-xml-da-client - open-adt-tutorial - - open-witness - - openai-hs - - openapi3-code-generator - opencv-extra + - openpgp - openpgp-Crypto - openpgp-crypto-api - openssh-github-keys + - opentelemetry-lightstep + - opentok - oplang - optima-for-hasql - optimal-blocks @@ -2898,11 +2999,10 @@ dont-distribute-packages: - orchid - orchid-demo - order-maintenance - - orgmode-parse - orgstat - osm-download - otp-authenticator - - overload + - outsort - package-o-tron - padKONTROL - pairing @@ -2918,6 +3018,7 @@ dont-distribute-packages: - papa-lens - papa-semigroupoids - paprika + - parallel-tree-search - parameterized - parco-attoparsec - parco-parsec @@ -2926,9 +3027,8 @@ dont-distribute-packages: - parse-help - parsestar - parsley + - parsley-core - parsley-garnish - - partial-lens - - partial-semigroup-test - passman-cli - patch-image - patterns @@ -2936,12 +3036,15 @@ dont-distribute-packages: - pcapng - pcf - pdf-slave + - pdfname + - pdfsplit - peakachu - pec - pell - penny - penny-bin - penny-lib + - penrose - peparser - perdure - perf-analysis @@ -2956,36 +3059,34 @@ dont-distribute-packages: - persistent-audit - persistent-hssqlppp - persistent-map - - persistent-mtl_0_5_0_0 + - persistent-mtl - persistent-mysql-haskell + - persistent-protobuf - persistent-relational-record - persona-idp - peyotls - peyotls-codec - pg-entity - - pgsql-simple - phonetic-languages-common - phonetic-languages-constraints - phonetic-languages-examples - phonetic-languages-general - phonetic-languages-permutations - - phonetic-languages-phonetics-basics - phonetic-languages-properties - phonetic-languages-simplified-common - - phonetic-languages-simplified-generalized-examples-array - - phonetic-languages-simplified-generalized-examples-common - - phonetic-languages-simplified-generalized-properties-array - phonetic-languages-simplified-lists-examples - phonetic-languages-simplified-properties-lists - phonetic-languages-simplified-properties-lists-double - phonetic-languages-ukrainian - phooey + - photoname - pianola - pier - ping - pinpon - pipe-enumerator - pipes-attoparsec-streaming + - pipes-bzip - pipes-cacophony - pipes-cereal-plus - pipes-conduit @@ -2996,16 +3097,15 @@ dont-distribute-packages: - pipes-illumina - pipes-key-value-csv - pipes-misc - - pipes-network-tls - pipes-p2p - pipes-p2p-examples - pisigma - pitchtrack - pkgtreediff - - pkgtreediff_0_6_0 - planet-mitchell - playlists-http - plocketed + - plow-log-async - plugins-auto - png-file - pngload @@ -3013,10 +3113,14 @@ dont-distribute-packages: - point-octree - pointless-lenses - pointless-rewrite - - poke + - poker - polh-lexicon - polydata + - polysemy-RandomFu - polysemy-http + - polysemy-log-co + - polysemy-methodology-composite + - polysemy-scoped-fs - polyseq - polytypeable-utils - pomodoro @@ -3025,16 +3129,16 @@ dont-distribute-packages: - porcupine-core - porcupine-http - porcupine-s3 - - portray-diff-hunit - - portray-diff-quickcheck - ports - poseidon - poseidon-postgis + - postgresql-common-persistent - postgresql-pure - postgresql-simple-ltree - postgresql-simple-queue - postgresql-simple-typed - postgresql-tx-query + - postgresql-tx-squeal - postgresql-tx-squeal-compat-simple - postmark - potoki @@ -3053,26 +3157,23 @@ dont-distribute-packages: - presto-hdbc - preview - primal-memory + - primitive-containers - primula-board - primula-bot - proc - process-iterio - process-progress - process-qq - - process-sequential - process-streaming - procrastinating-structure - producer - product - prof2dot - progressbar - - project-forge - - project-m36 - prolog-graph - prolog-graph-lib - prologue - prolude - - prometheus-effect - propane - proplang - prosidyc @@ -3080,12 +3181,14 @@ dont-distribute-packages: - proto3-suite - proto3-wire - protobuf-native + - protocol-buffers-descriptor - protocol-buffers-descriptor-fork - proton - psql - ptera - ptera-core - ptera-th + - pubsub - puffytools - pugs-compat - pugs-hsregex @@ -3096,7 +3199,6 @@ dont-distribute-packages: - purescript-iso - pursuit-client - push-notify - - push-notify-apn - push-notify-ccs - push-notify-general - puzzle-draw-cmdline @@ -3104,25 +3206,27 @@ dont-distribute-packages: - qd-vec - qhs - qhull + - qnap-decrypt - qr-repa + - qtah-cpp-qt5 - qtah-examples + - qtah-generator - qtah-qt5 + - quantfin - quantum-random + - qudb - queryparser - queryparser-demo - queryparser-hive - queryparser-presto - queryparser-vertica - - queue-sheet - queuelike - - quickbooks - - quickcheck-combinators + - quickbench - quickcheck-poly - quickcheck-regex - quickcheck-relaxng - quickcheck-state-machine - quickcheck-state-machine-distributed - - quickcheck-webdriver - quicktest - quipper - quipper-algorithms @@ -3150,12 +3254,13 @@ dont-distribute-packages: - rainbow-tests - raketka - rallod + - randfile - random-access-file - random-class - random-effin + - random-extras - random-hypergeometric - range-space - - ranged-list - rasa - rasa-example-config - rasa-ext-bufs @@ -3194,14 +3299,18 @@ dont-distribute-packages: - record-preprocessor - record-syntax - records-th + - recursion-schemes-ix - redHandlers - reddit + - redis-io + - rediscaching-haxl - reduce-equations - refh - reflex-animation - reflex-backend-wai - reflex-dom-colonnade - reflex-dynamic-containers + - reflex-gadt-api - reflex-ghci - reflex-gloss-scene - reflex-localize @@ -3209,7 +3318,6 @@ dont-distribute-packages: - reflex-monad-auth - reflex-process - refractor - - refurb - reg-alloc-graph-color - regex-deriv - regex-genex @@ -3223,10 +3331,14 @@ dont-distribute-packages: - regions-monadstf - regions-mtl - registry-aeson + - registry-aeson_0_3_0_0 - registry-hedgehog - registry-hedgehog-aeson + - registry-hedgehog-aeson_0_3_0_0 + - registry-hedgehog_0_8_0_0 - registry-messagepack - registry-options + - registry-options_0_2_0_0 - regular-extras - regular-web - regular-xmlpickler @@ -3252,8 +3364,9 @@ dont-distribute-packages: - replicant - repr - representable-tries + - reserve - resin - - resource-pool-catchio + - resistor-cube - resource-simple - rest-client - rest-core @@ -3267,6 +3380,9 @@ dont-distribute-packages: - restful-snap - restricted-workers - rethinkdb-model + - rethinkdb-wereHamster + - retroclash-lib + - retroclash-sim - rewrite - rewriting - rezoom @@ -3275,7 +3391,10 @@ dont-distribute-packages: - rfc-psql - rfc-redis - rfc-servant + - rhine-gloss + - rhine-terminal - rhythm-game-tutorial + - rib - ribosome - ribosome-app - ribosome-host @@ -3283,7 +3402,6 @@ dont-distribute-packages: - ribosome-root - ribosome-test - ridley-extras - - rio-process-pool - riot - ripple - ripple-federation @@ -3321,7 +3439,6 @@ dont-distribute-packages: - ruler - ruler-core - runtime-arbitrary - - runtime-instances - rv - s-expression - safe-coloured-text-gen @@ -3334,6 +3451,8 @@ dont-distribute-packages: - safer-file-handles-text - sai-shape-syb - sak + - salak-toml + - salak-yaml - saltine-quickcheck - salvia - salvia-demo @@ -3344,7 +3463,6 @@ dont-distribute-packages: - samtools-conduit - samtools-enumerator - samtools-iteratee - - sandwich-webdriver - sarsi - sasl - sat-micro-hs @@ -3352,6 +3470,7 @@ dont-distribute-packages: - satchmo-funsat - satchmo-toysat - sauron + - sbvPlugin - sc2-lowlevel - sc2-support - sc2hs @@ -3361,7 +3480,7 @@ dont-distribute-packages: - scalpel-search - scan-metadata - scan-vector-machine - - schedevr + - scgi - scheduling - schematic - scholdoc @@ -3373,16 +3492,25 @@ dont-distribute-packages: - scope-cairo - scotty-fay - scotty-hastache + - scotty-haxl - scp-streams - scrabble-bot - scrapbook - scroll + - sdp-binary + - sdp-deepseq + - sdp-hashable + - sdp-io + - sdp-quickcheck + - sdp4bytestring + - sdp4text + - sdp4unordered + - sdp4vector - seakale-postgresql - seakale-tests - secrm - sednaDBXML - seitz-symbol - - selda-postgresql - selenium-server - self-extract - semantic-source @@ -3391,7 +3519,6 @@ dont-distribute-packages: - semiring-num - sensenet - sentence-jp - - seonbi - seqaid - seqloc - seqloc-datafiles @@ -3411,11 +3538,8 @@ dont-distribute-packages: - servant-db-postgresql - servant-ede - servant-ekg - - servant-event-stream - servant-examples - - servant-http2-client - - servant-jquery - - servant-js + - servant-haxl-client - servant-matrix-param - servant-oauth2 - servant-oauth2-examples @@ -3428,9 +3552,9 @@ dont-distribute-packages: - servant-streaming-client - servant-streaming-docs - servant-streaming-server + - servant-streamly - servant-swagger-tags - servant-to-elm - - servant-util-beam-pg - servant-waargonaut - servant-zeppelin-client - servant-zeppelin-server @@ -3440,15 +3564,15 @@ dont-distribute-packages: - sgf - sgrep - sha1 + - shady-gen - shady-graphics - - shake-ats - shake-bindist - shake-minify-css + - shake-pack - shakebook - shaker - shapefile - shapely-data - - shapes-demo - sheets - shelduck - shellmate-extras @@ -3462,13 +3586,13 @@ dont-distribute-packages: - sigma-ij - signals - signature + - signify-hs - silvi - simgi - simple - simple-c-value - simple-firewire - simple-log-syslog - - simple-logging - simple-nix - simple-pascal - simple-postgresql-orm @@ -3483,30 +3607,32 @@ dont-distribute-packages: - skeletons - sketch-frp-copilot - skylark-client - - skylighting_0_13_1_1 - slate - - slidemews - slip32 - smallcheck-laws - smallcheck-lens - smallstring - smartword + - smash-aeson + - smash-lens + - smash-microlens + - smash-optics - smcdel - smith-cli - smith-client - smt + - smtlib-backends-process + - smtlib-backends-tests + - smtlib-backends-z3 - smtlib2-debug - smtlib2-pipe - smtlib2-quickcheck - smtlib2-timing - smtp2mta - - snap-auth-cli + - snap-blaze-clay - snap-elm - snap-extras - - snap-utils - snaplet-actionlog - - snaplet-auth-acid - - snaplet-coffee - snaplet-customauth - snaplet-fay - snaplet-hasql @@ -3514,19 +3640,19 @@ dont-distribute-packages: - snaplet-hdbc - snaplet-lss - snaplet-mongoDB - - snaplet-mysql-simple - snaplet-oauth - snaplet-postmark - - snaplet-recaptcha - snaplet-redson - snaplet-rest - snaplet-riak - snaplet-sedna - - snaplet-sqlite-simple-jwt-auth - snaplet-stripe - snaplet-tasks - snaplet-wordpress + - snappy-conduit + - snappy-framing - snappy-iteratee + - snappy-lazy - sndfile-enumerators - sneakyterm - sneathlane-haste @@ -3535,22 +3661,27 @@ dont-distribute-packages: - snow-white - snowflake-core - snowflake-server + - soap + - soap-openssl + - soap-tls - sock2stream - socket-io - sockets - - solana-staking-csvs + - socketson - solga-swagger - solr + - sonic-visualiser - souffle-dsl - - sounddelay - - soundgen + - sound-collage - source-code-server - - spade + - soxlib - sparkle - sparrow - sparsebit - sparser + - spartacon - spata + - spatial-math - specialize-th - spectral-clustering - speculation-transformers @@ -3560,19 +3691,28 @@ dont-distribute-packages: - sphinx-cli - spice - spike + - splines + - split-record - sprinkles + - sproxy + - sproxy-web + - sproxy2 - sql-simple-mysql - sql-simple-pool - sql-simple-postgresql - sql-simple-sqlite - - sqlite-easy - sqlite-simple-typed - sqsd-local + - squeal-postgresql + - squeal-postgresql-ltree + - squeal-postgresql-uuid-ossp + - sr-extra - sscgi - sshd-lint - sssp - sstable - stable-tree + - stack-hpc-coveralls - stack-network - stack-run-auto - stackage @@ -3592,20 +3732,26 @@ dont-distribute-packages: - statsd-client - statsdi - stern-brocot + - stm-supply - stmcontrol + - storablevector-carray - storablevector-streamfusion - stratum-tool - stratux - stratux-demo - stratux-http - stratux-websockets + - streamed - streaming-fft - streaming-process + - streamly-posix - strelka + - strelka-wai + - strict-containers-lens + - strict-containers-serialise - strict-data - string-typelits - stripe-haskell - - stripe-hs - stripe-http-client - stripe-http-streams - stripe-tests @@ -3622,14 +3768,12 @@ dont-distribute-packages: - sugar-json - sugar-scheme - summoner-tui - - sump - sunroof-examples - sunroof-server - supercollider-ht - supercollider-midi - superconstraints - supernova - - supply-chain - sv - sv-cassava - sv-svfactor @@ -3638,7 +3782,6 @@ dont-distribute-packages: - swapper - sweet-egison - switch - - sydtest - sydtest-aeson - sydtest-amqp - sydtest-autodocodec @@ -3674,15 +3817,23 @@ dont-distribute-packages: - syntax-pretty - syntax-printer - syntaxnet-haskell + - synthesizer + - synthesizer-alsa + - synthesizer-core + - synthesizer-dimensional + - synthesizer-filter - synthesizer-llvm + - synthesizer-midi - sys-process - systemstats - t3-client - ta + - tableaux - tag-stream - tagged-list - tagged-th - tagsoup-navigate + - tagstew - tak-ai - tal - talash @@ -3694,33 +3845,35 @@ dont-distribute-packages: - task - task-distribution - tasty-bdd + - tasty-checklist - tasty-groundhog-converters - tasty-integrate - tasty-jenkins-xml - tasty-laws - tasty-lens - - tasty-sugar - tateti-tateti - tbox + - tcache-AWS - tccli - - tdd-util - tdlib - tdlib-gen - tdlib-types - - telega + - techlab - telegram-bot - telegram-raw-api + - temporal-csound - ten-lens - ten-unordered-containers - tensorflow-core-ops - tensorflow-logging - tensorflow-ops + - tensorflow-records + - tensorflow-records-conduit - terminal-text - terrahs - test-sandbox-compose - test-simple - testbench - - text-builder-dev_0_3_3 - text-json-qq - text-locale-encoding - text-plus @@ -3730,13 +3883,14 @@ dont-distribute-packages: - th-context - th-instances - th-typegraph - - theatre - theoremquest-client - thimk + - threaded + - threepenny-gui-flexbox - thumbnail-polish - tic-tac-toe - tickle - - tidal-serial + - tiger - tighttp - timberc - time-exts @@ -3747,7 +3901,7 @@ dont-distribute-packages: - timeseries - timezone-unix - tinkoff-invest-sdk - - tinyMesh + - tintin - tip-haskell-frontend - tip-lib - titan @@ -3773,7 +3927,6 @@ dont-distribute-packages: - too-many-cells - top - topaz - - topkata - total-map - toxcore - toxcore-c @@ -3803,15 +3956,15 @@ dont-distribute-packages: - trek-app - trek-db - triangulation - - tries - trimpolya - - truelevel - trurl - tsession-happstack - tsweb - tuntap-simple - tup-functor + - tuple-append-instances - tuple-ops + - turingMachine - tweet-hs - twentefp-eventloop-graphics - twentefp-eventloop-trees @@ -3819,13 +3972,10 @@ dont-distribute-packages: - twentefp-rosetree - twentefp-trees - twentyseven - - twhs - twidge - twilight-stm - twill - - twitter-conduit - twitter-enumerator - - twitter-types-lens - txt - type-assertions - type-cache @@ -3840,9 +3990,10 @@ dont-distribute-packages: - type-sub-th - typed-admin - typed-encoding-encoding + - typed-spreadsheet - typed-streams + - typedflow - typelevel - - typelevel-rewrite-rules - typescript-docs - typson-beam - typson-esqueleto @@ -3856,9 +4007,7 @@ dont-distribute-packages: - uhc-util - ukrainian-phonetics-basic - unagi-bloomfilter - - unbeliever - unbound - - unfoldable-restricted - uni-events - uni-graphs - uni-htk @@ -3888,6 +4037,7 @@ dont-distribute-packages: - urembed - uri-enumerator - uri-enumerator-file + - urlpath - usb - usb-enumerator - usb-hid @@ -3903,6 +4053,7 @@ dont-distribute-packages: - uu-cco-hut-parsing - uu-cco-uu-parsinglib - uu-options + - uuagc - uuid-crypto - uvector-algorithms - v4l2 @@ -3916,20 +4067,27 @@ dont-distribute-packages: - variable-precision - vault-tool-server - vault-trans + - vaultaire-common - vcache-trie - vcard - vcsgui - vect-floating-accelerate - vector-instances-collections - vector-text + - vectortiles - venzone - verdict-json - verifiable-expressions + - verismith + - versioning-servant - vessel - vflow-types + - vformat-aeson + - vformat-time - vfr-waypoints - vigilance - vimeta + - vinyl-generics - vinyl-operational - vision - visual-graphrewrite @@ -3938,25 +4096,34 @@ dont-distribute-packages: - vocoder-conduit - vocoder-dunai - voicebase + - vorbiscomment - vpq - vty-ui-extras - waargonaut - wahsp - wai-devel - wai-dispatch + - wai-frontend-monadcgi - wai-handler-snap - wai-hastache + - wai-log - wai-middleware-brotli - wai-middleware-cache - wai-middleware-cache-redis - wai-middleware-consul + - wai-middleware-content-type - wai-middleware-rollbar - wai-middleware-route - wai-middleware-throttle + - wai-middleware-verbs + - wai-route - wai-routing + - wai-session-alt - wai-session-tokyocabinet - wai-thrift + - wai-transformers - waldo + - warp-grpc - warped - wavesurfer - wavy @@ -3964,6 +4131,7 @@ dont-distribute-packages: - web-inv-route - web-mongrel2 - web-page + - web-rep - web-routes-regular - web-routing - web3 @@ -3973,10 +4141,14 @@ dont-distribute-packages: - web3-polkadot - web3-provider - web3-solidity + - webcloud - webcrank-wai - - webdriver-angular - webdriver-w3c + - webify - webserver + - websockets-rpc + - websockets-simple + - websockets-simple-extra - weighted - werewolf-slack - wgpu-hs @@ -3985,8 +4157,10 @@ dont-distribute-packages: - wheb-redis - wheb-strapped - whitespace + - wholepixels - wikipedia4epub - winio + - wire-streams - wl-pprint-ansiterm - wl-pprint-terminfo - wlc-hs @@ -4001,8 +4175,10 @@ dont-distribute-packages: - wrecker-ui - wright - writer-cps-full + - wsjtx-udp - wtk-gtk - wu-wei + - wuerfelschlange - wumpus-basic - wumpus-drawing - wumpus-microprint @@ -4039,6 +4215,8 @@ dont-distribute-packages: - xournal-convert - xournal-parser - xournal-render + - xournal-types + - xrefcheck - xtc - yajl-enumerator - yam @@ -4054,13 +4232,13 @@ dont-distribute-packages: - yaml-rpc-scotty - yaml-rpc-snap - yarr-image-io + - yasi - yavie - ycextra - yeamer - yeshql - yesod-articles - yesod-auth-ldap - - yesod-auth-lti13 - yesod-colonnade - yesod-continuations - yesod-examples @@ -4077,7 +4255,9 @@ dont-distribute-packages: - yesod-worker - yi - yi-contrib + - yi-core - yi-dynamic-configuration + - yi-emacs-colours - yi-frontend-pango - yi-frontend-vty - yi-fuzzy-open @@ -4101,8 +4281,8 @@ dont-distribute-packages: - yuuko - zasni-gerna - zephyr-copilot + - zerobin - zeromq3-conduit - - zeromq3-haskell - zeroth - zifter-cabal - zifter-git @@ -4114,6 +4294,7 @@ dont-distribute-packages: - zippo - ziptastic-client - zlib-enum + - zm - zmcat - zoom-cache - zoom-cache-pcm diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-nix.nix b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-nix.nix index d37fd3f7e6..ff1d115f64 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-nix.nix +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/configuration-nix.nix @@ -91,10 +91,6 @@ self: super: builtins.intersectAttrs super { ''; }) super.jni; - # The package doesn't know about the AL include hierarchy. - # https://github.com/phaazon/al/issues/1 - al = appendConfigureFlag "--extra-include-dirs=${pkgs.openal}/include/AL" super.al; - # Won't find it's header files without help. sfml-audio = appendConfigureFlag "--extra-include-dirs=${pkgs.openal}/include/AL" super.sfml-audio; @@ -119,29 +115,13 @@ self: super: builtins.intersectAttrs super { ]; }) super.arbtt; - hzk = overrideCabal (drv: { - preConfigure = "sed -i -e /include-dirs/d hzk.cabal"; - configureFlags = [ "--extra-include-dirs=${pkgs.zookeeper_mt}/include/zookeeper" ]; - }) super.hzk; - - haskakafka = overrideCabal (drv: { - preConfigure = "sed -i -e /extra-lib-dirs/d -e /include-dirs/d haskakafka.cabal"; - configureFlags = [ "--extra-include-dirs=${pkgs.rdkafka}/include/librdkafka" ]; - }) super.haskakafka; - - # library has hard coded directories that need to be removed. Reported upstream here https://github.com/haskell-works/hw-kafka-client/issues/32 - hw-kafka-client = dontCheck (overrideCabal (drv: { - preConfigure = "sed -i -e /extra-lib-dirs/d -e /include-dirs/d -e /librdkafka/d hw-kafka-client.cabal"; - configureFlags = [ "--extra-include-dirs=${pkgs.rdkafka}/include/librdkafka" ]; - }) super.hw-kafka-client); + hzk = appendConfigureFlag "--extra-include-dirs=${pkgs.zookeeper_mt}/include/zookeeper" super.hzk; # Foreign dependency name clashes with another Haskell package. libarchive-conduit = super.libarchive-conduit.override { archive = pkgs.libarchive; }; # Heist's test suite requires system pandoc - heist = overrideCabal (drv: { - testToolDepends = [pkgs.pandoc]; - }) super.heist; + heist = addTestToolDepend pkgs.pandoc super.heist; # https://github.com/NixOS/cabal2nix/issues/136 and https://github.com/NixOS/cabal2nix/issues/216 gio = disableHardening ["fortify"] (addPkgconfigDepend pkgs.glib (addBuildTool self.buildHaskellPackages.gtk2hs-buildtools super.gio)); @@ -326,30 +306,16 @@ self: super: builtins.intersectAttrs super { greenclip = addExtraLibrary pkgs.xorg.libXdmcp super.greenclip; # The cabal files for these libraries do not list the required system dependencies. - libjwt-typed = overrideCabal (drv: { - librarySystemDepends = [ pkgs.libjwt ]; - }) super.libjwt-typed; - miniball = overrideCabal (drv: { - librarySystemDepends = [ pkgs.miniball ]; - }) super.miniball; - SDL-image = overrideCabal (drv: { - librarySystemDepends = [ pkgs.SDL pkgs.SDL_image ] ++ drv.librarySystemDepends or []; - }) super.SDL-image; - SDL-ttf = overrideCabal (drv: { - librarySystemDepends = [ pkgs.SDL pkgs.SDL_ttf ]; - }) super.SDL-ttf; - SDL-mixer = overrideCabal (drv: { - librarySystemDepends = [ pkgs.SDL pkgs.SDL_mixer ]; - }) super.SDL-mixer; - SDL-gfx = overrideCabal (drv: { - librarySystemDepends = [ pkgs.SDL pkgs.SDL_gfx ]; - }) super.SDL-gfx; - SDL-mpeg = overrideCabal (drv: { - configureFlags = (drv.configureFlags or []) ++ [ - "--extra-lib-dirs=${pkgs.smpeg}/lib" - "--extra-include-dirs=${pkgs.smpeg}/include/smpeg" - ]; - }) super.SDL-mpeg; + libjwt-typed = addExtraLibrary pkgs.libjwt super.libjwt-typed; + miniball = addExtraLibrary pkgs.miniball super.miniball; + SDL-image = addExtraLibrary pkgs.SDL super.SDL-image; + SDL-ttf = addExtraLibrary pkgs.SDL super.SDL-ttf; + SDL-mixer = addExtraLibrary pkgs.SDL super.SDL-mixer; + SDL-gfx = addExtraLibrary pkgs.SDL super.SDL-gfx; + SDL-mpeg = appendConfigureFlags [ + "--extra-lib-dirs=${pkgs.smpeg}/lib" + "--extra-include-dirs=${pkgs.smpeg.dev}/include/smpeg" + ] super.SDL-mpeg; # https://github.com/ivanperez-keera/hcwiid/pull/4 hcwiid = overrideCabal (drv: { @@ -383,9 +349,7 @@ self: super: builtins.intersectAttrs super { }) super.fltkhs; # https://github.com/skogsbaer/hscurses/pull/26 - hscurses = overrideCabal (drv: { - librarySystemDepends = (drv.librarySystemDepends or []) ++ [ pkgs.ncurses ]; - }) super.hscurses; + hscurses = addExtraLibrary pkgs.ncurses super.hscurses; # Looks like Avahi provides the missing library dnssd = super.dnssd.override { dns_sd = pkgs.avahi.override { withLibdnssdCompat = true; }; }; @@ -395,6 +359,13 @@ self: super: builtins.intersectAttrs super { preCheck = ''export PATH="$PWD/dist/build/ghcide:$PATH"''; }) super.ghcide; + tasty-discover = overrideCabal (drv: { + # Depends on itself for testing + preBuild = '' + export PATH="$PWD/dist/build/tasty-discover:$PATH" + '' + (drv.preBuild or ""); + }) super.tasty-discover; + # GLUT uses `dlopen` to link to freeglut, so we need to set the RUNPATH correctly for # it to find `libglut.so` from the nix store. We do this by patching GLUT.cabal to pkg-config # depend on freeglut, which provides GHC to necessary information to generate a correct RPATH. @@ -407,9 +378,7 @@ self: super: builtins.intersectAttrs super { # so disable this on Darwin only ${if pkgs.stdenv.isDarwin then null else "GLUT"} = addPkgconfigDepend pkgs.freeglut (appendPatch ./patches/GLUT.patch super.GLUT); - libsystemd-journal = overrideCabal (old: { - librarySystemDepends = old.librarySystemDepends or [] ++ [ pkgs.systemd ]; - }) super.libsystemd-journal; + libsystemd-journal = doJailbreak (addExtraLibrary pkgs.systemd super.libsystemd-journal); # does not specify tests in cabal file, instead has custom runTest cabal hook, # so cabal2nix will not detect test dependencies. @@ -529,11 +498,11 @@ self: super: builtins.intersectAttrs super { sed -i -e 's|"bitwuzla"|"${pkgs.bitwuzla}/bin/bitwuzla"|' Data/SBV/Provers/Bitwuzla.hs sed -i -e 's|"boolector"|"${pkgs.boolector}/bin/boolector"|' Data/SBV/Provers/Boolector.hs sed -i -e 's|"cvc4"|"${pkgs.cvc4}/bin/cvc4"|' Data/SBV/Provers/CVC4.hs + sed -i -e 's|"cvc5"|"${pkgs.cvc5}/bin/cvc5"|' Data/SBV/Provers/CVC5.hs sed -i -e 's|"yices-smt2"|"${pkgs.yices}/bin/yices-smt2"|' Data/SBV/Provers/Yices.hs sed -i -e 's|"z3"|"${pkgs.z3}/bin/z3"|' Data/SBV/Provers/Z3.hs # Solvers we don't provide are removed from tests - sed -i -e 's|, cvc5||' SBVTestSuite/SBVConnectionTest.hs sed -i -e 's|, mathSAT||' SBVTestSuite/SBVConnectionTest.hs sed -i -e 's|, dReal||' SBVTestSuite/SBVConnectionTest.hs ''; @@ -668,7 +637,9 @@ self: super: builtins.intersectAttrs super { # Tests require network access. spagoWithoutChecks = dontCheck spagoOldAeson; in - spagoWithoutChecks; + # spago doesn't currently build with ghc92. Top-level spago is pulled from + # ghc90 and explicitly marked unbroken. + markBroken spagoWithoutChecks; # checks SQL statements at compile time, and so requires a running PostgreSQL # database to run it's test suite @@ -703,21 +674,6 @@ self: super: builtins.intersectAttrs super { aeson-gadt-th = disableCabalFlag "build-readme" (doJailbreak super.aeson-gadt-th); - neuron = overrideCabal (drv: { - # neuron expects the neuron-search script to be in PATH at built-time. - buildTools = [ pkgs.buildPackages.makeWrapper ]; - preConfigure = '' - mkdir -p $out/bin - cp src-bash/neuron-search $out/bin/neuron-search - chmod +x $out/bin/neuron-search - wrapProgram $out/bin/neuron-search --prefix 'PATH' ':' ${ - with pkgs; - lib.makeBinPath [ fzf ripgrep gawk bat findutils envsubst ] - } - PATH=$PATH:$out/bin - ''; - }) super.neuron; - # Fix compilation of Setup.hs by removing the module declaration. # See: https://github.com/tippenein/guid/issues/1 guid = overrideCabal (drv: { @@ -734,13 +690,9 @@ self: super: builtins.intersectAttrs super { postgresql-libpq-notify = dontCheck super.postgresql-libpq-notify; postgresql-pure = dontCheck super.postgresql-pure; - retrie = overrideCabal (drv: { - testToolDepends = [ pkgs.git pkgs.mercurial ] ++ drv.testToolDepends or []; - }) super.retrie; - - retrie_1_2_0_0 = overrideCabal (drv: { - testToolDepends = [ pkgs.git pkgs.mercurial ] ++ drv.testToolDepends or []; - }) super.retrie_1_2_0_0; + retrie = addTestToolDepends [pkgs.git pkgs.mercurial] super.retrie; + retrie_1_2_0_0 = addTestToolDepends [pkgs.git pkgs.mercurial] super.retrie_1_2_0_0; + retrie_1_2_1_1 = addTestToolDepends [pkgs.git pkgs.mercurial] super.retrie_1_2_1_1; haskell-language-server = let # This wrapper will be included in the sdist in the next release, then we can remove this custom fetch. @@ -907,7 +859,7 @@ self: super: builtins.intersectAttrs super { (overrideCabal { doCheck = pkgs.postgresql.doCheck; }) ]; - cachix = self.generateOptparseApplicativeCompletions [ "cachix" ] (super.cachix.override { nix = pkgs.nixVersions.nix_2_9; }); + cachix = super.cachix.override { nix = pkgs.nixVersions.nix_2_9; }; hercules-ci-agent = super.hercules-ci-agent.override { nix = pkgs.nixVersions.nix_2_9; }; hercules-ci-cnix-expr = @@ -989,11 +941,11 @@ self: super: builtins.intersectAttrs super { }) super.procex; # Test suite wants to run main executable - fourmolu_0_9_0_0 = overrideCabal (drv: { + fourmolu = overrideCabal (drv: { preCheck = drv.preCheck or "" + '' export PATH="$PWD/dist/build/fourmolu:$PATH" ''; - }) super.fourmolu_0_9_0_0; + }) super.fourmolu; # Test suite needs to execute 'disco' binary disco = overrideCabal (drv: { @@ -1059,12 +1011,11 @@ self: super: builtins.intersectAttrs super { # Tests assume dist-newstyle build directory is present cabal-hoogle = dontCheck super.cabal-hoogle; - nfc = overrideCabal (drv: { - isExecutable = true; - executableHaskellDepends = with self; drv.executableHaskellDepends or [] ++ [ base base16-bytestring bytestring ]; - configureFlags = drv.configureFlags or [] ++ [ "-fbuild-examples" ]; - enableSeparateBinOutput = true; - }) super.nfc; + nfc = lib.pipe super.nfc [ + enableSeparateBinOutput + (addBuildDepend self.base16-bytestring) + (appendConfigureFlag "-fbuild-examples") + ]; # Wants to execute cabal-install to (re-)build itself hint = dontCheck super.hint; @@ -1136,7 +1087,6 @@ self: super: builtins.intersectAttrs super { hls-floskell-plugin hls-fourmolu-plugin hls-module-name-plugin - hls-pragmas-plugin hls-splice-plugin hls-refactor-plugin hls-code-range-plugin @@ -1147,6 +1097,7 @@ self: super: builtins.intersectAttrs super { # Flaky tests hls-hlint-plugin = dontCheck super.hls-hlint-plugin; + hls-pragmas-plugin = dontCheck super.hls-pragmas-plugin; hls-class-plugin = dontCheck super.hls-class-plugin; hls-rename-plugin = dontCheck super.hls-rename-plugin; hls-alternate-number-format-plugin = dontCheck super.hls-alternate-number-format-plugin; diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/hackage-packages.nix b/third_party/nixpkgs/pkgs/development/haskell-modules/hackage-packages.nix index b32900944a..a8a151385c 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/hackage-packages.nix +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/hackage-packages.nix @@ -1,4 +1,4 @@ -/* hackage-packages.nix is an auto-generated file -- DO NOT EDIT! */ +/* hackage-packages.nix is auto-generated by hackage2nix -- DO NOT EDIT MANUALLY! */ { pkgs, lib, callPackage }: @@ -312,7 +312,6 @@ self: { description = "Efficient, high-level dynamic programming"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ADPfusionForest" = callPackage @@ -1334,6 +1333,34 @@ self: { mainProgram = "bnfc"; }) {}; + "BNFC_2_9_4_1" = callPackage + ({ mkDerivation, alex, array, base, containers, deepseq, directory + , filepath, happy, hspec, hspec-discover, HUnit, mtl, pretty + , process, QuickCheck, string-qq, temporary, time, transformers + }: + mkDerivation { + pname = "BNFC"; + version = "2.9.4.1"; + sha256 = "0l3jw86b14jfrd4phjkhpl9qq8im3lnbbhhadmivdr1k2sf614sy"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + array base containers deepseq directory filepath mtl pretty process + string-qq time transformers + ]; + libraryToolDepends = [ alex happy ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ + array base containers deepseq directory filepath hspec HUnit mtl + pretty process QuickCheck string-qq temporary time + ]; + testToolDepends = [ alex happy hspec-discover ]; + description = "A compiler front-end generator"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "bnfc"; + }) {}; + "BNFC-meta" = callPackage ({ mkDerivation, alex-meta, array, base, fail, happy-meta , haskell-src-meta, syb, template-haskell @@ -1644,7 +1671,6 @@ self: { description = "BLAST-related tools"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "BiobaseDotP" = callPackage @@ -1679,6 +1705,7 @@ self: { ]; description = "European Nucleotide Archive data"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "BiobaseEnsembl" = callPackage @@ -1743,6 +1770,7 @@ self: { ]; description = "streaming FASTA parser"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "fastaextract"; }) {}; @@ -1904,7 +1932,6 @@ self: { description = "Import Turner RNA parameters"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "BiobaseTypes" = callPackage @@ -1938,6 +1965,7 @@ self: { ]; description = "Collection of types for bioinformatics"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "BiobaseVienna" = callPackage @@ -1995,6 +2023,7 @@ self: { ]; description = "Efficient RNA/DNA/Protein Primary/Secondary Structure"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "SubOptDistance"; }) {}; @@ -2069,8 +2098,8 @@ self: { }: mkDerivation { pname = "Blammo"; - version = "1.1.1.0"; - sha256 = "1hqrdzj30lwwb7zis2hkfz887jh107k33mbqkj2hxvd56sc4din5"; + version = "1.1.1.1"; + sha256 = "1qms459jmikx2dxsl6znn8scb6293s4zprz419da5s71lkiql7cp"; libraryHaskellDepends = [ aeson base bytestring case-insensitive clock containers dlist envparse exceptions fast-logger http-types lens monad-logger-aeson @@ -2083,8 +2112,6 @@ self: { testToolDepends = [ markdown-unlit ]; description = "Batteries-included Structured Logging library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "BlastHTTP" = callPackage @@ -2150,7 +2177,9 @@ self: { executableHaskellDepends = [ base cmdargs ]; description = "A tool for posting Haskelly articles to blogs"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "BlogLiterately"; + broken = true; }) {}; "BlogLiterately-diagrams" = callPackage @@ -2629,7 +2658,6 @@ self: { description = "Firing rules semantic of CSPM"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "CSPM-Frontend" = callPackage @@ -3130,6 +3158,8 @@ self: { libraryHaskellDepends = [ base free mmorph mtl transformers-base ]; description = "Generalized stream processors"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "Chart" = callPackage @@ -4326,6 +4356,7 @@ self: { ]; description = "Deterministic random bit generator (aka RNG, PRNG) based HMACs, Hashes, and Ciphers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "DSA" = callPackage @@ -4350,7 +4381,6 @@ self: { description = "Implementation of DSA, based on the description of FIPS 186-4"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "DSH" = callPackage @@ -4557,14 +4587,12 @@ self: { }: mkDerivation { pname = "DataVersion"; - version = "0.1.0.0"; - sha256 = "13cw7rzp510spn5ncxdqyzz66d9dnyq7s650zmpmjx2cg456zw9x"; + version = "0.1.0.1"; + sha256 = "051fmlydjqhp67b1ivb7rhaz1vwya6g6r6akwwms1lkhl6d95yda"; libraryHaskellDepends = [ base generic-lens microlens ]; testHaskellDepends = [ base hspec QuickCheck ]; description = "Type safe data migrations"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "Deadpan-DDP" = callPackage @@ -4648,6 +4676,7 @@ self: { libraryHaskellDepends = [ base haskell-src mtl TypeCompose ]; description = "Arrows for \"deep application\""; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "DeepDarkFantasy" = callPackage @@ -5351,8 +5380,6 @@ self: { libraryHaskellDepends = [ base mtl ]; description = "A library of efficient, purely-functional data structures (API)"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "EdisonCore" = callPackage @@ -5368,7 +5395,6 @@ self: { ]; description = "A library of efficient, purely-functional data structures (Core Implementations)"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "EditTimeReport" = callPackage @@ -5810,7 +5836,6 @@ self: { description = "A grab bag of modules"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "FAI" = callPackage @@ -6175,7 +6200,6 @@ self: { ]; description = "Functions on System.FilePath"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "FileSystem" = callPackage @@ -7083,6 +7107,8 @@ self: { benchmarkHaskellDepends = [ base criterion lens ]; description = "Typesafe functional GPU graphics programming"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "GPipe-Examples" = callPackage @@ -7145,7 +7171,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "playground"; - broken = true; }) {}; "GPipe-TextureLoad" = callPackage @@ -7200,6 +7225,7 @@ self: { description = "Some kind of game library or set of utilities"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "Ganymede" = callPackage @@ -7956,6 +7982,7 @@ self: { ]; description = "Gtk-based GUIs for Tangible Values"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "GuiHaskell" = callPackage @@ -8006,7 +8033,6 @@ self: { ]; description = "The Haskell/R mixed programming environment"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "H"; }) {}; @@ -9319,7 +9345,6 @@ self: { license = lib.licenses.mit; platforms = lib.platforms.x86; hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) gsl;}; "HROOT" = callPackage @@ -9571,8 +9596,6 @@ self: { testHaskellDepends = [ aeson attoparsec base HTF text ]; description = "Small template engine"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "HSoM" = callPackage @@ -9695,28 +9718,6 @@ self: { }) {}; "HTTP" = callPackage - ({ mkDerivation, array, base, bytestring, deepseq, httpd-shed - , HUnit, mtl, network, network-uri, parsec, pureMD5, split - , test-framework, test-framework-hunit, time - }: - mkDerivation { - pname = "HTTP"; - version = "4000.3.16"; - sha256 = "0bgyj3ahqlyg0jw6qsm2sncp8mklc4h0dj91s043vb3ig01iq2fn"; - revision = "1"; - editedCabalFile = "0wagwgzfy2mqkha88fjl37ah0l7h4biz34v65993xd502ly68hk0"; - libraryHaskellDepends = [ - array base bytestring mtl network network-uri parsec time - ]; - testHaskellDepends = [ - base bytestring deepseq httpd-shed HUnit mtl network network-uri - pureMD5 split test-framework test-framework-hunit - ]; - description = "A library for client-side HTTP"; - license = lib.licenses.bsd3; - }) {}; - - "HTTP_4000_4_1" = callPackage ({ mkDerivation, array, base, bytestring, deepseq, httpd-shed , HUnit, mtl, network, network-uri, parsec, pureMD5, split , test-framework, test-framework-hunit, time, transformers @@ -9737,7 +9738,6 @@ self: { ]; description = "A library for client-side HTTP"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "HTTP-Simple" = callPackage @@ -9926,6 +9926,7 @@ self: { description = "An Haskell library to drive the french Minitel through a serial port"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "HaPy" = callPackage @@ -10198,7 +10199,9 @@ self: { ]; description = "Yet another Hangman game"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hangman-ascii"; + broken = true; }) {}; "HappyTree" = callPackage @@ -10269,18 +10272,6 @@ self: { }) {}; "HasBigDecimal" = callPackage - ({ mkDerivation, base, hspec, QuickCheck }: - mkDerivation { - pname = "HasBigDecimal"; - version = "0.1.1"; - sha256 = "0ddyngd1mrx9s11nm7sh0nh76zi1zi7yjzmqk7xbpv6ijqka050a"; - libraryHaskellDepends = [ base ]; - testHaskellDepends = [ base hspec QuickCheck ]; - description = "A library for arbitrary precision decimal numbers"; - license = lib.licenses.asl20; - }) {}; - - "HasBigDecimal_0_2_0_0" = callPackage ({ mkDerivation, base, criterion, hspec, hspec-discover, QuickCheck }: mkDerivation { @@ -10295,7 +10286,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "A library for arbitrary precision decimal numbers"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "HasCacBDD" = callPackage @@ -11150,6 +11140,21 @@ self: { license = lib.licenses.publicDomain; }) {inherit (pkgs) openssl;}; + "HsOpenSSL_0_11_7_4" = callPackage + ({ mkDerivation, base, bytestring, Cabal, network, openssl, time }: + mkDerivation { + pname = "HsOpenSSL"; + version = "0.11.7.4"; + sha256 = "0zxcfa8b0ng97v53vb8fvg2gss89b28xiz83rx38a0h4lsxpn2xf"; + setupHaskellDepends = [ base Cabal ]; + libraryHaskellDepends = [ base bytestring network time ]; + librarySystemDepends = [ openssl ]; + testHaskellDepends = [ base bytestring ]; + description = "Partial OpenSSL binding for Haskell"; + license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; + }) {inherit (pkgs) openssl;}; + "HsOpenSSL-x509-system" = callPackage ({ mkDerivation, base, bytestring, HsOpenSSL, unix }: mkDerivation { @@ -11554,8 +11559,8 @@ self: { }: mkDerivation { pname = "IPv6DB"; - version = "0.3.2"; - sha256 = "1nhgbrfwabnxgbjwjyksaazb08awlhf7m8w7dx3xhm32m1dkkm6f"; + version = "0.3.3"; + sha256 = "1zgkn998cm2h1fxkydvzb8lxsshlgimz9xa91w7vdpq67gf7rx90"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -11710,6 +11715,7 @@ self: { ]; description = "Data interning (with compact regions where possible)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "Interpolation" = callPackage @@ -12146,7 +12152,9 @@ self: { testToolDepends = [ tasty-discover ]; description = "Blurhash is a very compact represenation of a placeholder for an image"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "JuicyPixels-blurhash-exe"; + broken = true; }) {}; "JuicyPixels-canvas" = callPackage @@ -12906,6 +12914,7 @@ self: { description = "Library for RedPitaya"; license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "LargeCardinalHierarchy" = callPackage @@ -13185,10 +13194,8 @@ self: { }: mkDerivation { pname = "ListLike"; - version = "4.7.7"; - sha256 = "0h4yfzrf3ljvzf3x75nx791bpxlmdi7f42ff0xyfk8d498iws08a"; - revision = "1"; - editedCabalFile = "155y1r051ar9k8vhb54q5ga7a5rzlm4jx1c42pbw7cfy3c8af6hc"; + version = "4.7.8"; + sha256 = "1l9pfjy7gh7xqnzflixp37d6lsppmlffzmmq75xn9r8ij3r2jycs"; libraryHaskellDepends = [ array base bytestring containers deepseq dlist fmlist text utf8-string vector @@ -13670,7 +13677,6 @@ self: { description = "Automatic inductive functional programmer by systematic search"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "MailchimpSimple" = callPackage @@ -13775,6 +13781,7 @@ self: { description = "MaybeT monad transformer using transformers instead of mtl"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "MazesOfMonad" = callPackage @@ -13992,8 +13999,8 @@ self: { pname = "MissingH"; version = "1.5.0.1"; sha256 = "0c92fdv32nq51kfdizi3lpxmnvscsgk6marfzaycd7k05aka8byb"; - revision = "1"; - editedCabalFile = "18jigc9mis823dhlx14yd0r59618jwqw93hsdyzmdrgfaigd6qpn"; + revision = "2"; + editedCabalFile = "11d922r06p00gcgzhb29hhjkq8ajy1xbqdiwdpbmhp2ar7fw7g9l"; libraryHaskellDepends = [ array base containers directory filepath hslogger mtl network network-bsd old-locale old-time parsec process regex-compat time @@ -14130,6 +14137,7 @@ self: { description = "Monad-transformer version of the Control.Exception module"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "MonadCatchIO-mtl-foreign" = callPackage @@ -14157,8 +14165,6 @@ self: { ]; description = "Monad-transformer compatible version of the Control.Exception module"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "MonadCatchIO-transformers-foreign" = callPackage @@ -14175,6 +14181,7 @@ self: { description = "Polymorphic combinators for working with foreign functions"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "MonadCompose" = callPackage @@ -14244,6 +14251,8 @@ self: { pname = "MonadRandom"; version = "0.6"; sha256 = "0i6h9s2iqj71q06i9al3s2akmdjjx16h015qb81nhgjwi4q8cf69"; + revision = "1"; + editedCabalFile = "1swvjlsazh6wj1k8yj7ijarmw1sfmk9fv53h1hbfqcxva4gbhnkp"; libraryHaskellDepends = [ base mtl primitive random transformers transformers-compat ]; @@ -14261,6 +14270,8 @@ self: { libraryHaskellDepends = [ base MonadRandom mtl random ]; description = "Lazy monad for psuedo random-number generation"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "MonadStack" = callPackage @@ -14652,6 +14663,7 @@ self: { ]; description = "NGLess implements ngless, a DSL for processing sequencing data"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "ngless"; }) {}; @@ -14723,6 +14735,7 @@ self: { description = "A Haskell interface to Lego Mindstorms NXT"; license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {bluetooth = null;}; "NXTDSL" = callPackage @@ -14765,6 +14778,8 @@ self: { testToolDepends = [ tasty-discover ]; description = "Easy-and-safe-to-use high-level Haskell bindings to NaCl"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "NameGenerator" = callPackage @@ -14877,7 +14892,6 @@ self: { description = "Simple scoring schemes for word alignments"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "NaturalSort" = callPackage @@ -15365,9 +15379,7 @@ self: { executableHaskellDepends = [ base filepath ]; description = "ONC RPC (aka Sun RPC) and XDR library"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; mainProgram = "hsrpcgen"; - broken = true; }) {}; "OSM" = callPackage @@ -15384,6 +15396,7 @@ self: { description = "Parse OpenStreetMap files"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "OTP" = callPackage @@ -15556,18 +15569,14 @@ self: { }) {}; "OneTuple" = callPackage - ({ mkDerivation, base, base-orphans, ghc-prim, hashable - , template-haskell - }: + ({ mkDerivation, base, ghc-prim, hashable, template-haskell }: mkDerivation { pname = "OneTuple"; version = "0.3.1"; sha256 = "1vry21z449ph9k61l5zm7mfmdwkwszxqdlawlhvwrd1gsn13d1cq"; revision = "3"; editedCabalFile = "0g4siv8s6dlrdsivap2qy6ig08y5bjbs93jk192zmgkp8iscncpw"; - libraryHaskellDepends = [ - base base-orphans ghc-prim template-haskell - ]; + libraryHaskellDepends = [ base ghc-prim template-haskell ]; testHaskellDepends = [ base hashable template-haskell ]; description = "Singleton Tuple"; license = lib.licenses.bsd3; @@ -15871,6 +15880,7 @@ self: { benchmarkHaskellDepends = [ base criterion ]; description = "Efficient ordered (by popcount) enumeration of bits"; license = lib.licenses.bsd3; + platforms = lib.platforms.x86; }) {}; "Ordinals" = callPackage @@ -16171,6 +16181,7 @@ self: { ]; description = "BaseSpecs used for @Parallel-Arrows-Definition@ and Co"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "Parallel-Arrows-Definition" = callPackage @@ -16182,6 +16193,8 @@ self: { libraryHaskellDepends = [ base deepseq split ]; description = "Multithreaded evaluation using Arrows"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "Parallel-Arrows-Eden" = callPackage @@ -16222,6 +16235,7 @@ self: { ]; description = "GpH based backend for @Parallel-Arrows-Definition@ in a multicore variant"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "Parallel-Arrows-ParMonad" = callPackage @@ -16241,6 +16255,7 @@ self: { ]; description = "Par Monad (@monad-par@) based backend for @Parallel-Arrows-Definition@"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "Parry" = callPackage @@ -16694,6 +16709,8 @@ self: { ]; description = "Efficient multidimensional arrays"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "PrimitiveArray-Pretty" = callPackage @@ -16956,28 +16973,6 @@ self: { }) {}; "PyF" = callPackage - ({ mkDerivation, base, bytestring, deepseq, filepath, ghc, ghc-boot - , hspec, HUnit, mtl, parsec, process, template-haskell, temporary - , text, time - }: - mkDerivation { - pname = "PyF"; - version = "0.10.2.0"; - sha256 = "0a1bq7c3vx6yp7745xr2vlxjsqgqa0s1f7yzqnfsybqwff03zbcw"; - revision = "1"; - editedCabalFile = "0hinbn56d8bw45zxazpmgv1b6lcmlcys9jfdkv2lyr5j44pzpvvj"; - libraryHaskellDepends = [ - base bytestring ghc ghc-boot mtl parsec template-haskell text time - ]; - testHaskellDepends = [ - base bytestring deepseq filepath hspec HUnit process - template-haskell temporary text time - ]; - description = "Quasiquotations for a python like interpolated string formatter"; - license = lib.licenses.bsd3; - }) {}; - - "PyF_0_11_1_0" = callPackage ({ mkDerivation, base, bytestring, deepseq, filepath, ghc, ghc-boot , hspec, HUnit, mtl, parsec, process, template-haskell, temporary , text, time @@ -16995,7 +16990,6 @@ self: { ]; description = "Quasiquotations for a python like interpolated string formatter"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "QIO" = callPackage @@ -17156,6 +17150,8 @@ self: { benchmarkHaskellDepends = [ base hspec QuickCheck ]; description = "Valid and Invalid generator"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "QuickPlot" = callPackage @@ -17293,7 +17289,6 @@ self: { description = "A reflective JSON serializer/parser"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "RLP" = callPackage @@ -17420,7 +17415,6 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "RNAdotplot"; - broken = true; }) {}; "RNAlien" = callPackage @@ -17521,8 +17515,8 @@ self: { pname = "RabbitMQ"; version = "0.1.0.0"; sha256 = "14rxwsxxqhj91alcnvvp6949ig0ifnls9x2mgnd1jmknqz7pwvrs"; - revision = "1"; - editedCabalFile = "17ypl1n9f1nyc1axdmmfgb188d0ml7i3sqgmbka1k4l0p2ik9qpp"; + revision = "2"; + editedCabalFile = "1m6pgha36ag2r0vnr242bndgbpq14v4ng6pab96pxzlj1yjlij6l"; libraryHaskellDepends = [ array base binary bytestring clock containers HsOpenSSL io-streams monad-control network network-uri openssl-streams split stm text @@ -18130,8 +18124,6 @@ self: { librarySystemDepends = [ smpeg ]; description = "Binding to the SMPEG library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) smpeg;}; "SDL-ttf" = callPackage @@ -18533,8 +18525,6 @@ self: { ]; description = "A parser for SWMM 5 binary .OUT files"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "SableCC2Hs" = callPackage @@ -18744,6 +18734,8 @@ self: { libraryHaskellDepends = [ base bytestring ]; description = "simple static linked SHA3 using private symbols and the ref impl"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "SegmentTree" = callPackage @@ -18865,37 +18857,6 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "ShellCheck_0_7_2" = callPackage - ({ mkDerivation, aeson, array, base, bytestring, containers - , deepseq, Diff, directory, filepath, mtl, parsec, process - , QuickCheck, regex-tdfa - }: - mkDerivation { - pname = "ShellCheck"; - version = "0.7.2"; - sha256 = "0wl43njaq95l35y5mvipwp1db9vr551nz9wl0xy83j1x1kc38xgz"; - revision = "1"; - editedCabalFile = "1w65zcr97mghraif6bgcdabzy2dp72gasaad57a9b5yp9i27p2rl"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson array base bytestring containers deepseq Diff directory - filepath mtl parsec process QuickCheck regex-tdfa - ]; - executableHaskellDepends = [ - aeson array base bytestring containers deepseq Diff directory - filepath mtl parsec QuickCheck regex-tdfa - ]; - testHaskellDepends = [ - aeson array base bytestring containers deepseq Diff directory - filepath mtl parsec QuickCheck regex-tdfa - ]; - description = "Shell script analysis tool"; - license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; - mainProgram = "shellcheck"; - }) {}; - "ShellCheck" = callPackage ({ mkDerivation, aeson, array, base, bytestring, containers , deepseq, Diff, directory, filepath, mtl, parsec, process @@ -18926,6 +18887,35 @@ self: { mainProgram = "shellcheck"; }) {}; + "ShellCheck_0_9_0" = callPackage + ({ mkDerivation, aeson, array, base, bytestring, containers + , deepseq, Diff, directory, fgl, filepath, mtl, parsec, process + , QuickCheck, regex-tdfa, transformers + }: + mkDerivation { + pname = "ShellCheck"; + version = "0.9.0"; + sha256 = "071k2gc8rzpg9lwq9g10c9xx0zm1wcgsf8v4n1csj9fm56vy7gmb"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson array base bytestring containers deepseq Diff directory fgl + filepath mtl parsec process QuickCheck regex-tdfa transformers + ]; + executableHaskellDepends = [ + aeson array base bytestring containers deepseq Diff directory fgl + filepath mtl parsec QuickCheck regex-tdfa transformers + ]; + testHaskellDepends = [ + aeson array base bytestring containers deepseq Diff directory fgl + filepath mtl parsec QuickCheck regex-tdfa transformers + ]; + description = "Shell script analysis tool"; + license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + mainProgram = "shellcheck"; + }) {}; + "Shellac" = callPackage ({ mkDerivation, base, directory, mtl, unix }: mkDerivation { @@ -19042,6 +19032,7 @@ self: { ]; description = "A programming model for declarative, high performance user interface"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "Shpadoinkle-backend-pardiff" = callPackage @@ -19079,7 +19070,6 @@ self: { description = "Use the high-performance Snabbdom virtual dom library written in JavaScript"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "Shpadoinkle-backend-static" = callPackage @@ -19116,6 +19106,8 @@ self: { libraryHaskellDepends = [ aeson base jsaddle lens text unliftio ]; description = "Debugging tools for Shpadoinkle applications"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "Shpadoinkle-developer-tools" = callPackage @@ -19249,6 +19241,7 @@ self: { libraryHaskellDepends = [ base lens Shpadoinkle text ]; description = "Lens combinators for Shpadoinkle applications"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "Shpadoinkle-router" = callPackage @@ -19284,6 +19277,7 @@ self: { libraryHaskellDepends = [ base lens Shpadoinkle streaming text ]; description = "Integration of the streaming library with Shpadoinkle continuations"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "Shpadoinkle-template" = callPackage @@ -19598,7 +19592,6 @@ self: { description = "Abstract full system simulator"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "SoccerFun" = callPackage @@ -20232,7 +20225,6 @@ self: { description = "Library which aids constructing generic (SYB3-based) widgets"; license = "LGPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "SyntaxMacros" = callPackage @@ -20329,6 +20321,8 @@ self: { ]; description = "A Transactional cache with user-defined persistence"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "THEff" = callPackage @@ -20412,6 +20406,7 @@ self: { libraryHaskellDepends = [ base DeepArrow TypeCompose ]; description = "Tangible Values -- composable interfaces"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "TYB" = callPackage @@ -20806,6 +20801,8 @@ self: { libraryHaskellDepends = [ base binary bytestring dataenc ]; description = "TigerHash with C implementation"; license = lib.licenses.gpl2Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "TimePiece" = callPackage @@ -21126,6 +21123,8 @@ self: { libraryHaskellDepends = [ base base-orphans ]; description = "Type composition classes & instances"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "TypeIlluminator" = callPackage @@ -21256,7 +21255,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "UTFTConverter"; - broken = true; }) {}; "Unique" = callPackage @@ -21268,6 +21266,8 @@ self: { pname = "Unique"; version = "0.4.7.9"; sha256 = "14f1qnmhdmbam8qis725dhwq1mk9h86fsnzhkwhsx73ny9z29s1l"; + revision = "1"; + editedCabalFile = "10s0npnfkh7naj49afmyrvnilikp6426fbhi49f97pxrgcmy4dvw"; libraryHaskellDepends = [ base containers extra hashable unordered-containers ]; @@ -21491,8 +21491,6 @@ self: { doHaddock = false; description = "This package is obsolete"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "VecN" = callPackage @@ -21564,7 +21562,6 @@ self: { description = "ViennaRNA v2 extensions"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ViennaRNAParser" = callPackage @@ -21613,6 +21610,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "Villefort"; + broken = true; }) {}; "Vulkan" = callPackage @@ -21657,7 +21655,6 @@ self: { ]; description = "WAVE audio file IO library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "sinewave"; }) {}; @@ -21831,6 +21828,8 @@ self: { testHaskellDepends = [ base ]; description = "Simple set types. Useful to create sets of arbitrary types and nested sets."; license = lib.licenses.lgpl3Plus; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "Weather" = callPackage @@ -22286,7 +22285,6 @@ self: { description = "Workflow patterns over a monad for thread state logging & recovery"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "WxGeneric" = callPackage @@ -22613,6 +22611,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "YACPong"; + broken = true; }) {}; "YFrob" = callPackage @@ -22698,8 +22697,8 @@ self: { ({ mkDerivation, base, deepseq, random, simple-affine-space }: mkDerivation { pname = "Yampa"; - version = "0.13.7"; - sha256 = "0fz4v7q0q1npqxgjcc5ig9ynz1jya54a3vdl5p2mzymg91hwapf8"; + version = "0.14"; + sha256 = "14fhg7pkvm3rjcw6v5c0jxnq2l7v3rhw1bkb3a6g1s27alar9ynl"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -22818,26 +22817,24 @@ self: { "Z-Data" = callPackage ({ mkDerivation, base, bytestring, Cabal, case-insensitive - , containers, deepseq, ghc-prim, hashable, hspec, hspec-discover - , HUnit, integer-gmp, primitive, QuickCheck, quickcheck-instances - , random, scientific, tagged, template-haskell, time - , unicode-collation, unordered-containers, uuid-types + , containers, deepseq, hashable, hspec, hspec-discover, HUnit + , primitive, QuickCheck, quickcheck-instances, random, scientific + , tagged, template-haskell, time, unicode-collation + , unordered-containers, uuid-types }: mkDerivation { pname = "Z-Data"; - version = "1.2.0.0"; - sha256 = "1kf20s8y2jgr4gsx72mj9ax6mxrwxz7ss034qsajzd8l3j1h5bir"; + version = "2.0.0.1"; + sha256 = "0w78yrphmb7w2vay75r1a5rlcar1345rvbsq8cx8zh3jcx2r802g"; setupHaskellDepends = [ base Cabal ]; libraryHaskellDepends = [ - base bytestring case-insensitive containers deepseq ghc-prim - hashable integer-gmp primitive QuickCheck random scientific tagged - template-haskell time unicode-collation unordered-containers - uuid-types + base bytestring case-insensitive containers deepseq hashable + primitive QuickCheck random scientific tagged template-haskell time + unicode-collation unordered-containers uuid-types ]; testHaskellDepends = [ - base containers hashable hspec HUnit integer-gmp primitive - QuickCheck quickcheck-instances scientific time - unordered-containers + base containers hashable hspec HUnit primitive QuickCheck + quickcheck-instances scientific time unordered-containers ]; testToolDepends = [ hspec-discover ]; description = "Array, vector and text"; @@ -22854,8 +22851,8 @@ self: { }: mkDerivation { pname = "Z-IO"; - version = "1.0.1.0"; - sha256 = "0w82pfbs7f8yiw7jv95m5gh8yd23v5gwdxjh7z8cwf173r5j6g0k"; + version = "2.0.0.0"; + sha256 = "1n621brs608v6kpnjxb3hgh3h0garw8k1hr1ym5l8l0v7h2gv085"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -22974,6 +22971,7 @@ self: { libraryHaskellDepends = [ base TypeCompose ]; description = "Zipping folds"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "ZipperAG" = callPackage @@ -24712,6 +24710,7 @@ self: { description = "AcousticBrainz API client"; license = lib.licenses.cc0; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "acquire" = callPackage @@ -24746,6 +24745,8 @@ self: { pname = "active"; version = "0.2.0.16"; sha256 = "1fz2rsyk41p9f9avlmn9lrdmii5alv88lkw677mw8q6mzyxpw67i"; + revision = "1"; + editedCabalFile = "0cyfwrr5c14f5rgrf8dv7i8qsrnmnzigw0xp6l88kfxd61zhk4n8"; libraryHaskellDepends = [ base lens linear semigroupoids semigroups vector ]; @@ -24847,10 +24848,8 @@ self: { }: mkDerivation { pname = "acts"; - version = "0.3.1.0"; - sha256 = "06bpayfa8vwj8dqlqp71nw2s9iwbffdknkk4hpazd4r1wvhnrg37"; - revision = "4"; - editedCabalFile = "081arnkkll6xkni350ywsnwzagnki2ly5in42cx5zcpfp1xbssmk"; + version = "0.3.1.1"; + sha256 = "1szr7afyk6hwx7hipwwsvhv7y57if4fydsblphvf8fmwg299ya4l"; libraryHaskellDepends = [ base deepseq finitary finite-typelits groups ]; @@ -24991,6 +24990,41 @@ self: { broken = true; }) {}; + "adhoc-fixtures" = callPackage + ({ mkDerivation, base, hspec, hspec-core, hspec-discover + , safe-exceptions, yarl + }: + mkDerivation { + pname = "adhoc-fixtures"; + version = "0.1.0.0"; + sha256 = "16m8a2b2z8n3zxr8dash6k1fq16ks7vi3dza751sd12ay7m0gn2w"; + libraryHaskellDepends = [ base safe-exceptions yarl ]; + testHaskellDepends = [ + base hspec hspec-core hspec-discover safe-exceptions yarl + ]; + testToolDepends = [ hspec-discover ]; + description = "Manage fine grained fixtures"; + license = lib.licenses.isc; + }) {}; + + "adhoc-fixtures-hspec" = callPackage + ({ mkDerivation, adhoc-fixtures, base, hspec, hspec-core + , hspec-discover, safe-exceptions, yarl + }: + mkDerivation { + pname = "adhoc-fixtures-hspec"; + version = "0.1.0.0"; + sha256 = "0xzgq11lwm66wi3sdlxxpqjgv9wfrysjvn28zyrjrq791vmlg0p9"; + libraryHaskellDepends = [ adhoc-fixtures base hspec yarl ]; + testHaskellDepends = [ + adhoc-fixtures base hspec hspec-core hspec-discover safe-exceptions + yarl + ]; + testToolDepends = [ hspec-discover ]; + description = "Manage fine grained fixtures"; + license = lib.licenses.isc; + }) {}; + "adhoc-network" = callPackage ({ mkDerivation, base, bytestring, containers, Crypto, dataenc , HaXml, hsgnutls, network, old-locale, parsec, pkcs1, random, time @@ -25045,6 +25079,7 @@ self: { description = "See README for more info"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "adjunctions" = callPackage @@ -25167,8 +25202,8 @@ self: { }: mkDerivation { pname = "advent-of-code-api"; - version = "0.2.8.1"; - sha256 = "17s80883jq75i129b1976qbvr56ml0bsadhfnx2qybbh7b55gxfh"; + version = "0.2.8.2"; + sha256 = "1z4y8bssmaappc7hamdzynjxd1mamn7vzyc0nymldxb8ly7fvpwy"; libraryHaskellDepends = [ aeson base bytestring containers deepseq directory filepath finite-typelits http-api-data http-client http-client-tls @@ -25180,38 +25215,59 @@ self: { license = lib.licenses.bsd3; }) {}; + "advent-of-code-api_0_2_8_4" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, deepseq + , directory, filepath, finite-typelits, http-api-data, http-client + , http-client-tls, http-media, HUnit, megaparsec, mtl, profunctors + , servant, servant-client, servant-client-core, stm, tagsoup, text + , time, time-compat + }: + mkDerivation { + pname = "advent-of-code-api"; + version = "0.2.8.4"; + sha256 = "1l7bl0aqn5d6ph730jpwb5h0lwhvrkcw4vla0l73sxrm52j9ma58"; + libraryHaskellDepends = [ + aeson base bytestring containers deepseq directory filepath + finite-typelits http-api-data http-client http-client-tls + http-media megaparsec mtl profunctors servant servant-client + servant-client-core stm tagsoup text time time-compat + ]; + testHaskellDepends = [ base directory filepath HUnit text ]; + description = "Advent of Code REST API bindings and servant API"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "advent-of-code-ocr" = callPackage ({ mkDerivation, base, containers, criterion, data-default-class - , heredoc, hspec, optparse-applicative, template-haskell, th-lift - , th-lift-instances + , heredoc, hspec, optparse-applicative, template-haskell, th-compat + , th-lift, th-lift-instances }: mkDerivation { pname = "advent-of-code-ocr"; - version = "0.1.2.0"; - sha256 = "0ppa386cbcdwx2k12ya19fsjlrgqgljdryv4mb3a0lrk44804k5c"; + version = "0.1.2.1"; + sha256 = "0dm8kv1k3h83fsblm64d8fqm760da8fl99rnxv2kvkp4nw8nfjm8"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base containers data-default-class heredoc template-haskell th-lift - th-lift-instances + base containers data-default-class heredoc template-haskell + th-compat th-lift th-lift-instances ]; executableHaskellDepends = [ base containers data-default-class heredoc optparse-applicative - template-haskell th-lift th-lift-instances + template-haskell th-compat th-lift th-lift-instances ]; testHaskellDepends = [ base containers data-default-class heredoc hspec template-haskell - th-lift th-lift-instances + th-compat th-lift th-lift-instances ]; benchmarkHaskellDepends = [ base containers criterion data-default-class heredoc - template-haskell th-lift th-lift-instances + template-haskell th-compat th-lift th-lift-instances ]; description = "Parse Advent of Code ASCII art letters"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "advent-of-code-ocr"; - broken = true; }) {}; "aern2-fun" = callPackage @@ -25514,18 +25570,6 @@ self: { }) {}; "aeson-commit" = callPackage - ({ mkDerivation, aeson, aeson-qq, base, hspec, mtl, text }: - mkDerivation { - pname = "aeson-commit"; - version = "1.4"; - sha256 = "1xbck5hcbfqm2kc3yzrl1dzdmjl9zf84vc33ird3c50ny884amwa"; - libraryHaskellDepends = [ aeson base mtl text ]; - testHaskellDepends = [ aeson aeson-qq base hspec text ]; - description = "Parse Aeson data with commitment"; - license = lib.licenses.bsd3; - }) {}; - - "aeson-commit_1_6_0" = callPackage ({ mkDerivation, aeson, aeson-qq, base, hspec, text, transformers }: mkDerivation { @@ -25536,7 +25580,6 @@ self: { testHaskellDepends = [ aeson aeson-qq base hspec text ]; description = "Parse Aeson data with commitment"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "aeson-compat" = callPackage @@ -25620,8 +25663,6 @@ self: { testToolDepends = [ tasty-discover ]; description = "JSON encoding/decoding for dependent-sum"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "aeson-deriving" = callPackage @@ -25820,7 +25861,9 @@ self: { ]; description = "Derivation of Aeson instances for GADTs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "readme"; + broken = true; }) {}; "aeson-generic-compat" = callPackage @@ -25972,25 +26015,6 @@ self: { }) {}; "aeson-optics" = callPackage - ({ mkDerivation, aeson, attoparsec, base, base-compat, bytestring - , optics-core, optics-extra, scientific, text, unordered-containers - , vector - }: - mkDerivation { - pname = "aeson-optics"; - version = "1.1.1"; - sha256 = "1na5nsbp4sds8q289knzj4rgiwabbinxm0ihh66jfz0sjiia4wp7"; - revision = "1"; - editedCabalFile = "0wyn0l2qhlrlrf5xy1grk9mshlxsfy566ayabg9f92w7m89n0kff"; - libraryHaskellDepends = [ - aeson attoparsec base base-compat bytestring optics-core - optics-extra scientific text unordered-containers vector - ]; - description = "Law-abiding optics for aeson"; - license = lib.licenses.mit; - }) {}; - - "aeson-optics_1_2_0_1" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, optics-core , optics-extra, scientific, text, text-short, vector }: @@ -26004,7 +26028,6 @@ self: { ]; description = "Law-abiding optics for aeson"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "aeson-options" = callPackage @@ -26049,8 +26072,6 @@ self: { testHaskellDepends = [ base hspec text ]; description = "Tiny library to get fields from JSON format"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "aeson-prefix" = callPackage @@ -26188,61 +26209,27 @@ self: { "aeson-schemas" = callPackage ({ mkDerivation, aeson, aeson-qq, base, criterion, deepseq - , first-class-families, hashable, hint, interpolate, megaparsec - , QuickCheck, raw-strings-qq, tasty, tasty-golden, tasty-hunit - , tasty-quickcheck, template-haskell, text, th-orphans - , th-test-utils, unordered-containers - }: - mkDerivation { - pname = "aeson-schemas"; - version = "1.3.5.1"; - sha256 = "1cp6q92z0zkz9kdkaialcx2v9plvmkcghrg54jv841iqxjwcbj3r"; - revision = "1"; - editedCabalFile = "1yllgsypwpk627x29bjcv49y4m4g8q2xgkj34z6nyib6w1bbjmna"; - libraryHaskellDepends = [ - aeson base first-class-families hashable megaparsec - template-haskell text unordered-containers - ]; - testHaskellDepends = [ - aeson aeson-qq base deepseq first-class-families hashable hint - interpolate megaparsec QuickCheck raw-strings-qq tasty tasty-golden - tasty-hunit tasty-quickcheck template-haskell text th-orphans - th-test-utils unordered-containers - ]; - benchmarkHaskellDepends = [ - aeson base criterion deepseq first-class-families hashable - megaparsec template-haskell text th-test-utils unordered-containers - ]; - description = "Easily consume JSON data on-demand with type-safety"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {}; - - "aeson-schemas_1_4_0_0" = callPackage - ({ mkDerivation, aeson, aeson-qq, base, criterion, deepseq - , filepath, first-class-families, hashable, hint, interpolate + , directory, filepath, first-class-families, hashable, interpolate , megaparsec, process, QuickCheck, raw-strings-qq, tasty , tasty-golden, tasty-hunit, tasty-quickcheck, template-haskell , temporary, text, th-orphans, th-test-utils, unordered-containers }: mkDerivation { pname = "aeson-schemas"; - version = "1.4.0.0"; - sha256 = "0nch4andx0w0l7dlw64ajz503f05zancx42178dsd5fskvd75ks2"; + version = "1.4.0.1"; + sha256 = "1yv4d4i8gmbv0mmlalhlafn9a6kv51wdwnpbksiajm6m47bajqym"; libraryHaskellDepends = [ aeson base first-class-families hashable megaparsec template-haskell text unordered-containers ]; testHaskellDepends = [ - aeson aeson-qq base deepseq filepath first-class-families hashable - hint interpolate megaparsec process QuickCheck raw-strings-qq tasty - tasty-golden tasty-hunit tasty-quickcheck template-haskell - temporary text th-orphans th-test-utils unordered-containers + aeson aeson-qq base deepseq directory filepath interpolate process + QuickCheck raw-strings-qq tasty tasty-golden tasty-hunit + tasty-quickcheck template-haskell temporary text th-orphans + th-test-utils ]; benchmarkHaskellDepends = [ - aeson base criterion deepseq first-class-families hashable - megaparsec template-haskell text th-test-utils unordered-containers + aeson base criterion deepseq template-haskell th-test-utils ]; description = "Easily consume JSON data on-demand with type-safety"; license = lib.licenses.bsd3; @@ -26336,8 +26323,8 @@ self: { }: mkDerivation { pname = "aeson-tiled"; - version = "0.0.2.1"; - sha256 = "0fm2dkp0gi5h8xv6b3ax5v5ni7gkdvj8m2v1nrmf7hcyan0lp2aa"; + version = "0.0.2.2"; + sha256 = "1p2w19gmlrcdsni7dj2bs3ajzn8a5460gwas97yl930gwiwivyif"; libraryHaskellDepends = [ aeson base bytestring containers text vector ]; @@ -26360,29 +26347,6 @@ self: { }) {}; "aeson-typescript" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, directory - , filepath, hspec, mtl, process, string-interpolate - , template-haskell, temporary, text, th-abstraction - , unordered-containers - }: - mkDerivation { - pname = "aeson-typescript"; - version = "0.3.0.1"; - sha256 = "0xbj6m1lxpv4qclz5msrdplpy3mdxq5icjl3fq4bwbqy5rs6vczv"; - libraryHaskellDepends = [ - aeson base containers mtl string-interpolate template-haskell text - th-abstraction unordered-containers - ]; - testHaskellDepends = [ - aeson base bytestring containers directory filepath hspec mtl - process string-interpolate template-haskell temporary text - th-abstraction unordered-containers - ]; - description = "Generate TypeScript definition files from your ADTs"; - license = lib.licenses.bsd3; - }) {}; - - "aeson-typescript_0_4_2_0" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, directory , filepath, hspec, mtl, process, string-interpolate , template-haskell, temporary, text, th-abstraction, transformers @@ -26403,7 +26367,6 @@ self: { ]; description = "Generate TypeScript definition files from your ADTs"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "aeson-utils" = callPackage @@ -26448,8 +26411,8 @@ self: { }: mkDerivation { pname = "aeson-via"; - version = "0.2.0"; - sha256 = "0v2k9ilm60hnjzsjw1x1b0qcyc6b6db64k6rkci9mbnfqv8bj2wj"; + version = "0.2.1"; + sha256 = "0g8sf1sv1fmqkqmfwsb8sxbgy63zg503gi9sxhhc9apfrp5z9kig"; libraryHaskellDepends = [ aeson aeson-casing base newtype-generics text ]; @@ -26632,7 +26595,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "ag-pictgen"; - broken = true; }) {}; "agda-language-server" = callPackage @@ -26734,8 +26696,8 @@ self: { }: mkDerivation { pname = "agda-unused"; - version = "0.2.0"; - sha256 = "0fxrmcc0kn3jyjbij2fv72pw0r1l2rvg8wglj1i8d438jqpffigw"; + version = "0.3.0"; + sha256 = "0yljqv24xws32vnkaqxngqmy6p0ad55razgcr1igyrc10dq4pm24"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -26889,6 +26851,8 @@ self: { ]; description = "air-extra"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "air-spec" = callPackage @@ -27115,6 +27079,8 @@ self: { ]; description = "GPSS-like DSL for Aivika"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "aivika-lattice" = callPackage @@ -27458,8 +27424,8 @@ self: { }: mkDerivation { pname = "algebra-checkers"; - version = "0.1.0.0"; - sha256 = "0phrm0lncqbjqsyxhk3ifmzfb2q42v6g81qklh49n1y73naykg9v"; + version = "0.1.0.1"; + sha256 = "1b1sj3niy3zwv2v412n6fnjapsz0xsl1zav8s326lx9gy9dxfdqs"; libraryHaskellDepends = [ ansi-terminal base checkers containers groups mtl pretty QuickCheck syb template-haskell th-instance-reification transformers @@ -27721,6 +27687,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "acb"; + broken = true; }) {}; "algorithmic-composition-basic" = callPackage @@ -27739,7 +27706,6 @@ self: { ]; description = "Helps to create experimental music from a file (or its part) and a Ukrainian text"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "algorithmic-composition-complex" = callPackage @@ -27761,6 +27727,7 @@ self: { description = "Helps to create more complex experimental music from a file (especially timbre)"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "algorithmic-composition-frequency-shift" = callPackage @@ -27789,7 +27756,6 @@ self: { libraryHaskellDepends = [ algorithmic-composition-basic base ]; description = "Some variants of the overtones functions to generate a timbre"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "align" = callPackage @@ -27834,6 +27800,7 @@ self: { ]; description = "Find relative time displacement of two recordings of the same music"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "align-audio"; }) {}; @@ -27993,6 +27960,8 @@ self: { testHaskellDepends = [ base containers random tasty tasty-hunit ]; description = "Rollback/replay NetCode for realtime, deterministic, multiplayer games"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "alpha" = callPackage @@ -28203,6 +28172,8 @@ self: { description = "Binding to the ALSA Library API (MIDI sequencer)"; license = lib.licenses.bsd3; platforms = lib.platforms.linux; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) alsa-lib;}; "alsa-seq-tests" = callPackage @@ -31278,6 +31249,7 @@ self: { description = "Client for analyze service"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "anansi" = callPackage @@ -31488,6 +31460,8 @@ self: { libraryHaskellDepends = [ base bytestring text ]; description = "Convert camelCase to snake_case and vice versa"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "animascii" = callPackage @@ -31794,8 +31768,8 @@ self: { ({ mkDerivation, base, colour }: mkDerivation { pname = "ansi-terminal"; - version = "0.11.3"; - sha256 = "0swy5alj4xvfsnjrfiwxdlgzdnggjy6lgbfwph2d7c8zyzn67mgl"; + version = "0.11.4"; + sha256 = "098f8bdxqmgxaz8y87s6b6bshsq950zq0b75rmbihp2k1a7y963q"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base colour ]; @@ -31805,13 +31779,14 @@ self: { "ansi-terminal-game" = callPackage ({ mkDerivation, ansi-terminal, array, base, bytestring, cereal - , clock, containers, exceptions, hspec, linebreak, mintty, mtl - , QuickCheck, random, split, terminal-size, timers-tick, unidecode + , clock, containers, exceptions, hspec, hspec-discover, linebreak + , mintty, mtl, QuickCheck, random, split, terminal-size + , timers-tick, unidecode }: mkDerivation { pname = "ansi-terminal-game"; - version = "1.8.0.0"; - sha256 = "09wd7gh8zm90wq080fsah0qjbr9x3vrh89am7yf0d84a0akqw65m"; + version = "1.8.0.1"; + sha256 = "1fic8wjkbpfd076shfrq8pxlnpsrm59yilbhiinynlgr4vhjncz5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -31824,10 +31799,39 @@ self: { exceptions hspec linebreak mintty mtl QuickCheck random split terminal-size timers-tick unidecode ]; + testToolDepends = [ hspec-discover ]; description = "sdl-like functions for terminal applications, based on ansi-terminal"; license = lib.licenses.gpl3Only; }) {}; + "ansi-terminal-game_1_8_1_0" = callPackage + ({ mkDerivation, ansi-terminal, array, base, bytestring, cereal + , clock, colour, containers, exceptions, hspec, hspec-discover + , linebreak, mintty, mtl, QuickCheck, random, split, terminal-size + , timers-tick, unidecode + }: + mkDerivation { + pname = "ansi-terminal-game"; + version = "1.8.1.0"; + sha256 = "0wyx6g9fydbnz9xwjniymwfgn3fgn6vql9spmzl3c1hlpbv5ikfq"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + ansi-terminal array base bytestring cereal clock colour containers + exceptions linebreak mintty mtl QuickCheck random split + terminal-size timers-tick unidecode + ]; + testHaskellDepends = [ + ansi-terminal array base bytestring cereal clock colour containers + exceptions hspec linebreak mintty mtl QuickCheck random split + terminal-size timers-tick unidecode + ]; + testToolDepends = [ hspec-discover ]; + description = "sdl-like functions for terminal applications, based on ansi-terminal"; + license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + }) {}; + "ansi-wl-pprint" = callPackage ({ mkDerivation, ansi-terminal, base }: mkDerivation { @@ -32371,6 +32375,8 @@ self: { testHaskellDepends = [ base ghc-prim ]; description = "prelude for Algebra of Programming"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "aos-signature" = callPackage @@ -32462,6 +32468,8 @@ self: { benchmarkSystemDepends = [ openssl ]; description = "Apache specific MD5 digest algorighm"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) openssl;}; "apart" = callPackage @@ -32787,6 +32795,8 @@ self: { pname = "api-tools"; version = "0.10.0.0"; sha256 = "0hz4pa0n4wf9kd8r98xd0c39p790fn9iaqzjj2m653641acjbm0w"; + revision = "1"; + editedCabalFile = "13c5qg7f1a0hh1x2dmw6hnpi2vkmcasg38wl3lzf2plfcibqb01m"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -33419,7 +33429,7 @@ self: { broken = true; }) {}; - "apply-refact" = callPackage + "apply-refact_0_9_3_0" = callPackage ({ mkDerivation, base, containers, directory, extra, filemanip , filepath, ghc, ghc-boot-th, ghc-exactprint, optparse-applicative , process, refact, silently, syb, tasty, tasty-expected-failure @@ -33450,10 +33460,11 @@ self: { ]; description = "Perform refactorings specified by the refact library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "refactor"; }) {}; - "apply-refact_0_10_0_0" = callPackage + "apply-refact" = callPackage ({ mkDerivation, base, containers, directory, extra, filemanip , filepath, ghc, ghc-boot-th, ghc-exactprint, ghc-paths , optparse-applicative, process, refact, silently, syb, tasty @@ -33484,6 +33495,40 @@ self: { ]; description = "Perform refactorings specified by the refact library"; license = lib.licenses.bsd3; + mainProgram = "refactor"; + }) {}; + + "apply-refact_0_11_0_0" = callPackage + ({ mkDerivation, base, containers, directory, extra, filemanip + , filepath, ghc, ghc-boot-th, ghc-exactprint, ghc-paths + , optparse-applicative, process, refact, silently, syb, tasty + , tasty-expected-failure, tasty-golden, transformers, uniplate + , unix-compat + }: + mkDerivation { + pname = "apply-refact"; + version = "0.11.0.0"; + sha256 = "1bmm9s8h5grqp1c8m1x9icbhznfc565za8w3sqfpiylid7c7fz72"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers directory extra filemanip ghc ghc-boot-th + ghc-exactprint ghc-paths process refact syb transformers uniplate + unix-compat + ]; + executableHaskellDepends = [ + base containers directory extra filemanip filepath ghc ghc-boot-th + ghc-exactprint ghc-paths optparse-applicative process refact syb + transformers uniplate unix-compat + ]; + testHaskellDepends = [ + base containers directory extra filemanip filepath ghc ghc-boot-th + ghc-exactprint ghc-paths optparse-applicative process refact + silently syb tasty tasty-expected-failure tasty-golden transformers + uniplate unix-compat + ]; + description = "Perform refactorings specified by the refact library"; + license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "refactor"; }) {}; @@ -33969,6 +34014,8 @@ self: { ]; description = "Distribute hackage packages to archlinux"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "arch-web" = callPackage @@ -34173,8 +34220,8 @@ self: { }: mkDerivation { pname = "arduino-copilot"; - version = "1.7.3"; - sha256 = "02jk4vx6wdbci4rw5gb878y28g2x4krs6v1478cgp8z181kj38xy"; + version = "1.7.4"; + sha256 = "1yin826p57pmabv763l9igz6lk6c43f0y6cg2f5lqi6q1662x03w"; libraryHaskellDepends = [ base containers copilot copilot-c99 copilot-language directory filepath mtl optparse-applicative sketch-frp-copilot temporary @@ -34420,10 +34467,8 @@ self: { }: mkDerivation { pname = "arion-compose"; - version = "0.1.3.0"; - sha256 = "1pw0vqx1y3zgq303gdgd3vkz95mqrv8hl0pfkw6kyc49hj7l864y"; - revision = "1"; - editedCabalFile = "03pp8dhxdcjkxw2mxgy667p266chbsqn13vc900cccy3qibqqk6m"; + version = "0.2.0.0"; + sha256 = "051lbklcdj7rz9l5mnbijwjy62g0xnvx7s3yjfrb4x9qm3jpscci"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -35079,10 +35124,10 @@ self: { }: mkDerivation { pname = "ascii"; - version = "1.1.3.0"; - sha256 = "0pzyamd64mj8sx5a43gi7yjdy5dx6k9648ihbgsri8k8srlhm0c8"; - revision = "1"; - editedCabalFile = "0lxjb940qm86i1b2i9dgyj8874y49spwmkm5ninxd5hs7g9manll"; + version = "1.2.3.0"; + sha256 = "0s6w1wv6hjx1abz038cw7fyl8ilbs3cxmcs989c3hh9659l82p2j"; + revision = "2"; + editedCabalFile = "16b1dmjl0p2zdn05h2iwm1ymhrvgr19c1gzankrn0i7jj89nf979"; libraryHaskellDepends = [ ascii-case ascii-char ascii-group ascii-numbers ascii-predicates ascii-superset ascii-th base bytestring text @@ -35092,17 +35137,15 @@ self: { license = lib.licenses.asl20; }) {}; - "ascii_1_2_3_0" = callPackage + "ascii_1_2_4_0" = callPackage ({ mkDerivation, ascii-case, ascii-char, ascii-group, ascii-numbers , ascii-predicates, ascii-superset, ascii-th, base, bytestring , hedgehog, text }: mkDerivation { pname = "ascii"; - version = "1.2.3.0"; - sha256 = "0s6w1wv6hjx1abz038cw7fyl8ilbs3cxmcs989c3hh9659l82p2j"; - revision = "2"; - editedCabalFile = "16b1dmjl0p2zdn05h2iwm1ymhrvgr19c1gzankrn0i7jj89nf979"; + version = "1.2.4.0"; + sha256 = "1rsv9ah0jvf66w3k4smh67wpbm03xl4pdyj8svmdy49hbpihimwi"; libraryHaskellDepends = [ ascii-case ascii-char ascii-group ascii-numbers ascii-predicates ascii-superset ascii-th base bytestring text @@ -35143,6 +35186,19 @@ self: { license = lib.licenses.asl20; }) {}; + "ascii-case_1_0_1_0" = callPackage + ({ mkDerivation, ascii-char, base, hashable }: + mkDerivation { + pname = "ascii-case"; + version = "1.0.1.0"; + sha256 = "0hqpvhg4zvwjzya01y7sqly6dgfrg1zdvvpy6f1r5slzbnnfqswh"; + libraryHaskellDepends = [ ascii-char base hashable ]; + testHaskellDepends = [ ascii-char base ]; + description = "ASCII letter case"; + license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + }) {}; + "ascii-char" = callPackage ({ mkDerivation, base, hashable }: mkDerivation { @@ -35217,26 +35273,6 @@ self: { }) {}; "ascii-numbers" = callPackage - ({ mkDerivation, ascii-case, ascii-char, ascii-superset, base - , bytestring, d10, hashable, hedgehog, invert, text - }: - mkDerivation { - pname = "ascii-numbers"; - version = "1.0.0.0"; - sha256 = "1zmid1p3gqdmbriq6d87fyz69pksh1ha2x7w4m4pw7nch85440f5"; - libraryHaskellDepends = [ - ascii-case ascii-char ascii-superset base bytestring d10 hashable - text - ]; - testHaskellDepends = [ - ascii-case ascii-char ascii-superset base bytestring d10 hashable - hedgehog invert text - ]; - description = "ASCII representations of numbers"; - license = lib.licenses.asl20; - }) {}; - - "ascii-numbers_1_1_0_0" = callPackage ({ mkDerivation, ascii-case, ascii-char, ascii-superset, base , bytestring, hashable, hedgehog, invert, text }: @@ -35255,22 +35291,9 @@ self: { ]; description = "ASCII representations of numbers"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "ascii-predicates" = callPackage - ({ mkDerivation, ascii-char, base, hedgehog }: - mkDerivation { - pname = "ascii-predicates"; - version = "1.0.0.10"; - sha256 = "1964w50mvfwq4x6ss6vhz7q7fg8b9bfhczv95ll9cxs61qn2rir0"; - libraryHaskellDepends = [ ascii-char base ]; - testHaskellDepends = [ ascii-char base hedgehog ]; - description = "Various categorizations of ASCII characters"; - license = lib.licenses.asl20; - }) {}; - - "ascii-predicates_1_0_1_0" = callPackage ({ mkDerivation, ascii-char, base, hedgehog }: mkDerivation { pname = "ascii-predicates"; @@ -35282,7 +35305,6 @@ self: { testHaskellDepends = [ ascii-char base hedgehog ]; description = "Various categorizations of ASCII characters"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "ascii-progress" = callPackage @@ -35520,6 +35542,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "asif"; + broken = true; }) {}; "asil" = callPackage @@ -35539,7 +35562,6 @@ self: { description = "Action Script Instrumentation Library"; license = "LGPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "asn" = callPackage @@ -36389,6 +36411,7 @@ self: { description = "Code that helps you create a valid Atlassian Connect Descriptor"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "atmos" = callPackage @@ -36467,6 +36490,8 @@ self: { libraryHaskellDepends = [ base bimap containers mtl process syb ]; description = "An EDSL for embedded hard realtime applications"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "atom-basic" = callPackage @@ -36521,7 +36546,6 @@ self: { description = "Convenience functions for using Atom with the MSP430 microcontroller family"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "atomic-file-ops" = callPackage @@ -36766,6 +36790,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "atspkg"; + broken = true; }) {}; "ats-setup" = callPackage @@ -36826,8 +36851,8 @@ self: { pname = "attenuation"; version = "0.2.0"; sha256 = "0qp203qchmllxsrcfz04lxnssrij203i5q8byy159vc8cspd03nq"; - revision = "3"; - editedCabalFile = "1kg8pqm1ry2nm6182ncj17dfgfxvhw7px460b0kx6j6gy3p0r6l9"; + revision = "4"; + editedCabalFile = "1cp14r4i8zv3c93y78d61fxbwn8y2p7fqfp20192xy8zbnn3hdhy"; libraryHaskellDepends = [ base constraints ]; description = "Subtyping relations and variance roles"; license = lib.licenses.asl20; @@ -36839,8 +36864,8 @@ self: { pname = "attenuation-profunctors"; version = "0.1.0"; sha256 = "11zhh9iwb7r2jfp9bn8bqx1wzl4mln9v80gb2jijp0rryag25ili"; - revision = "1"; - editedCabalFile = "1y3if7w1r6lcr7287svb55pnmhhxrgl7yc906nnwr5qijbabsyvs"; + revision = "2"; + editedCabalFile = "1vwavg3c478r36qv1sz800b689cmpmldn3lyr9jl0ag1vmrff6y6"; libraryHaskellDepends = [ attenuation base constraints profunctors ]; @@ -37046,8 +37071,8 @@ self: { }: mkDerivation { pname = "attoparsec-data"; - version = "1.0.5.2"; - sha256 = "05x7xij5jyfzcl0hyjjw4lxlzgkmi55q48s5vbgvba48a2crv0qj"; + version = "1.0.5.3"; + sha256 = "00clpsv9ggkz34csdwx17fhz6sirvy71g897fwi33qzdv7sb2fx0"; libraryHaskellDepends = [ attoparsec attoparsec-time base bytestring scientific text time uuid @@ -37318,6 +37343,7 @@ self: { ]; description = "Interchange with the Audacity sound signal editor"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "audiovisual" = callPackage @@ -37708,8 +37734,6 @@ self: { ]; description = "Autodocodec interpreters for yaml"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "autoexporter" = callPackage @@ -38165,8 +38189,6 @@ self: { ]; description = "Avro serialization support for Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "avro-piper" = callPackage @@ -38329,6 +38351,8 @@ self: { pname = "aws-arn"; version = "0.3.0.0"; sha256 = "042lzvm1wpdqfrmgl1ygqgkdisvjyf9jfg9aqnibwhk2pw354dj3"; + revision = "1"; + editedCabalFile = "15l89gbz5lzc5v9v872cqdjkvpkiamx4qa6zpl6l4j8b24wkrcay"; libraryHaskellDepends = [ base deriving-compat hashable profunctors tagged text ]; @@ -38341,32 +38365,6 @@ self: { }) {}; "aws-cloudfront-signed-cookies" = callPackage - ({ mkDerivation, aeson, aeson-pretty, asn1-encoding, asn1-types - , base, base64-bytestring, bytestring, cookie, cryptonite, hedgehog - , lens, lens-aeson, neat-interpolation, optparse-applicative, pem - , text, time, vector - }: - mkDerivation { - pname = "aws-cloudfront-signed-cookies"; - version = "0.2.0.10"; - sha256 = "1mzsg6wfzgiippl8kw54m16i1m7zxwfqfwx3wbb3m372pg4h9sza"; - revision = "5"; - editedCabalFile = "1d9zsm2y08mzgr25wk3bf1laz918vbjvrfh7kc56r1naiqqprj74"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson aeson-pretty asn1-encoding asn1-types base base64-bytestring - bytestring cookie cryptonite lens lens-aeson optparse-applicative - pem text time vector - ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ base hedgehog neat-interpolation ]; - description = "Generate signed cookies for AWS CloudFront"; - license = lib.licenses.mit; - mainProgram = "aws-cloudfront-signed-cookies"; - }) {}; - - "aws-cloudfront-signed-cookies_0_2_0_11" = callPackage ({ mkDerivation, aeson, aeson-pretty, asn1-encoding, asn1-types , base, base64-bytestring, bytestring, cookie, cryptonite, hedgehog , lens, lens-aeson, neat-interpolation, optparse-applicative, pem @@ -38389,7 +38387,6 @@ self: { testHaskellDepends = [ base hedgehog neat-interpolation ]; description = "Generate signed cookies for AWS CloudFront"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "aws-cloudfront-signed-cookies"; }) {}; @@ -39968,6 +39965,23 @@ self: { license = lib.licenses.bsd3; }) {}; + "barbies_2_0_4_0" = callPackage + ({ mkDerivation, base, distributive, QuickCheck, tasty, tasty-hunit + , tasty-quickcheck, transformers + }: + mkDerivation { + pname = "barbies"; + version = "2.0.4.0"; + sha256 = "0v8bckxi58fkqgf1i1xd3100wp792pzd319xlfvmmw8z0ii1g872"; + libraryHaskellDepends = [ base distributive transformers ]; + testHaskellDepends = [ + base distributive QuickCheck tasty tasty-hunit tasty-quickcheck + ]; + description = "Classes for working with types that can change clothes"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "barbies-layered" = callPackage ({ mkDerivation, barbies, base, doctest, doctest-discover, hspec , hspec-discover, transformers @@ -40147,19 +40161,6 @@ self: { }) {}; "base-compat" = callPackage - ({ mkDerivation, base, unix }: - mkDerivation { - pname = "base-compat"; - version = "0.11.2"; - sha256 = "1nyvkaij4m01jndw72xl8931czz1xp6jpnynpajabys2ahabb9jk"; - revision = "1"; - editedCabalFile = "0h6vr19vr5bhm69w8rvswbvd4xgazggkcq8vz934x69www2cpgri"; - libraryHaskellDepends = [ base unix ]; - description = "A compatibility layer for base"; - license = lib.licenses.mit; - }) {}; - - "base-compat_0_12_2" = callPackage ({ mkDerivation, base, ghc-prim, unix }: mkDerivation { pname = "base-compat"; @@ -40168,25 +40169,9 @@ self: { libraryHaskellDepends = [ base ghc-prim unix ]; description = "A compatibility layer for base"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "base-compat-batteries" = callPackage - ({ mkDerivation, base, base-compat, hspec, hspec-discover - , QuickCheck - }: - mkDerivation { - pname = "base-compat-batteries"; - version = "0.11.2"; - sha256 = "08rh9nlm9ir28fm42xim06ga8qwdqdcvkbb5ckz99bwnmajndq1i"; - libraryHaskellDepends = [ base base-compat ]; - testHaskellDepends = [ base hspec QuickCheck ]; - testToolDepends = [ hspec-discover ]; - description = "base-compat with extra batteries"; - license = lib.licenses.mit; - }) {}; - - "base-compat-batteries_0_12_2" = callPackage ({ mkDerivation, base, base-compat, ghc-prim, hspec, hspec-discover , QuickCheck }: @@ -40199,7 +40184,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "base-compat with extra batteries"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "base-compat-migrate" = callPackage @@ -40331,10 +40315,8 @@ self: { }: mkDerivation { pname = "base16"; - version = "0.3.2.0"; - sha256 = "149kpmx63b8bmlwjpldkxxb4ldf28qz4h4i3ars6dwlyhzxg6qav"; - revision = "1"; - editedCabalFile = "0jlynzbrd9bl7gdnh4hwnf5b4s90yy0jjfr5zg5pw720lb4601y3"; + version = "0.3.2.1"; + sha256 = "0ybmcik5nlly7s9bfwlaqqk8jpgwxp5ac4bhdiq4lckbfynvm0qf"; libraryHaskellDepends = [ base bytestring deepseq primitive text text-short ]; @@ -40396,6 +40378,8 @@ self: { ]; description = "Optics for the Base16 library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "base32" = callPackage @@ -40449,6 +40433,8 @@ self: { ]; description = "Optics for the Base32 library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "base32-z-bytestring" = callPackage @@ -40541,14 +40527,15 @@ self: { "base62" = callPackage ({ mkDerivation, base, bytebuild, byteslice, doctest , natural-arithmetic, primitive, tasty, tasty-hunit - , tasty-quickcheck, wide-word + , tasty-quickcheck, wide-word, word-compat }: mkDerivation { pname = "base62"; - version = "0.1.0.1"; - sha256 = "0jfxbg9il8wiaaxdxjkp5kk6jph2b12qi9aiilb1y23h67lxmh2h"; + version = "0.1.0.2"; + sha256 = "14jjh2c5fhdjq7bwy3i3yff1mihmixjfs36fa8l9w0qvgpdl01qp"; libraryHaskellDepends = [ base bytebuild byteslice natural-arithmetic primitive wide-word + word-compat ]; testHaskellDepends = [ base byteslice doctest primitive tasty tasty-hunit tasty-quickcheck @@ -40589,18 +40576,18 @@ self: { "base64-bytes" = callPackage ({ mkDerivation, base, base64, base64-bytestring, byte-order , bytebuild, byteslice, bytestring, gauge, natural-arithmetic - , primitive, random, run-st, small-bytearray-builder + , primitive, random, run-st, word-compat }: mkDerivation { pname = "base64-bytes"; - version = "0.1.0.0"; - sha256 = "1h6hy4vqhramad2qbz91qirvc9vs2n67ni8qwagmimx0n4ds4w07"; + version = "0.1.1.0"; + sha256 = "0f0a0lj6k4k5b2mk9fbdl28x09h3mah5j44sj04k4ckdifkx3qw3"; libraryHaskellDepends = [ base byte-order bytebuild byteslice natural-arithmetic primitive - run-st + run-st word-compat ]; testHaskellDepends = [ - base byteslice natural-arithmetic primitive small-bytearray-builder + base bytebuild byteslice natural-arithmetic primitive ]; benchmarkHaskellDepends = [ base base64 base64-bytestring byteslice bytestring gauge primitive @@ -40608,7 +40595,6 @@ self: { ]; description = "Base64 encoding of byte sequences"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "base64-bytestring" = callPackage @@ -40688,6 +40674,8 @@ self: { ]; description = "Optics for the Base64 library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "base64-string" = callPackage @@ -41176,6 +41164,7 @@ self: { testHaskellDepends = [ base QuickCheck ]; description = "Compute number of possible arrangements in the battleship game"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "battleship-combinatorics"; }) {}; @@ -41317,7 +41306,6 @@ self: { ]; description = "Language tags as specified by BCP 47"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "bcp47-orphans" = callPackage @@ -41337,7 +41325,6 @@ self: { ]; description = "BCP47 orphan instances"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "bcrypt" = callPackage @@ -41513,26 +41500,28 @@ self: { ({ mkDerivation, aeson, base, beam-core, beam-postgres, bytestring , containers, criterion, deepseq, dlist , gargoyle-postgresql-connect, microlens, mtl, postgresql-simple - , pretty-simple, QuickCheck, quickcheck-instances, resource-pool - , scientific, splitmix, string-conv, tasty, tasty-quickcheck, text - , time, transformers, uuid, vector + , postgresql-syntax, pretty-simple, QuickCheck + , quickcheck-instances, resource-pool, scientific, splitmix + , string-conv, syb, tasty, tasty-quickcheck, text, time + , transformers, uuid, vector }: mkDerivation { pname = "beam-automigrate"; - version = "0.1.2.0"; - sha256 = "1y7i553zwm46k39k72l400rh2g8k6k2crjj2wdmkn9nndv1x7545"; + version = "0.1.3.0"; + sha256 = "04ihkc2zdflvsz4b94q6kf806hdaxin5gl1h4avp4lbjwzcjqvif"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson base beam-core beam-postgres bytestring containers deepseq - dlist microlens mtl postgresql-simple pretty-simple QuickCheck - quickcheck-instances scientific splitmix string-conv text time - transformers uuid vector + dlist gargoyle-postgresql-connect microlens mtl postgresql-simple + pretty-simple QuickCheck quickcheck-instances resource-pool + scientific splitmix string-conv tasty text time transformers uuid + vector ]; executableHaskellDepends = [ aeson base beam-core beam-postgres bytestring containers - gargoyle-postgresql-connect postgresql-simple resource-pool text - time + postgresql-simple postgresql-syntax pretty-simple QuickCheck syb + tasty tasty-quickcheck text time ]; testHaskellDepends = [ base containers pretty-simple QuickCheck tasty tasty-quickcheck @@ -41542,6 +41531,7 @@ self: { base beam-postgres bytestring containers criterion deepseq postgresql-simple QuickCheck splitmix ]; + doHaddock = false; description = "DB migration library for beam, targeting Postgres"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; @@ -41729,8 +41719,8 @@ self: { }: mkDerivation { pname = "bearriver"; - version = "0.13.7"; - sha256 = "1synznzas89cyp05lhiwxfsbmz5zv2pyjn08548dr21ih1x4560j"; + version = "0.14"; + sha256 = "0iyymq8iagdaymivvfg1vvks76bzaiyysw5mj4ifqn2zc9pyb3wd"; libraryHaskellDepends = [ base deepseq dunai MonadRandom mtl simple-affine-space transformers ]; @@ -42077,6 +42067,18 @@ self: { license = lib.licenses.bsd3; }) {}; + "benri-hspec_0_1_0_1" = callPackage + ({ mkDerivation, base, hspec }: + mkDerivation { + pname = "benri-hspec"; + version = "0.1.0.1"; + sha256 = "11x7dsp6hmz1an1nm8076lgdvgd8r67hl54p81jprpi8m0lh6mqa"; + libraryHaskellDepends = [ base hspec ]; + description = "Simplify tests where Either or Maybe types are returned from monadic code"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "bento" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -42127,6 +42129,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "berp"; + broken = true; }) {}; "bert" = callPackage @@ -42213,22 +42216,22 @@ self: { }) {}; "betris" = callPackage - ({ mkDerivation, ansi-terminal, base, containers, lens, linear - , optparse-applicative, random, stm, time-units, vty + ({ mkDerivation, ansi-terminal, base, containers, linear, microlens + , microlens-th, optparse-applicative, random, stm, time-units, vty }: mkDerivation { pname = "betris"; - version = "0.2.2.0"; - sha256 = "0ch0gm2fpzga0mqc8n8hdhs5qjfrcm5jxcyqgskwgq1y5jf60ifl"; + version = "0.2.3.0"; + sha256 = "0nqwz88hfhfrcfdd3224cc54yzdqz8hgq358pxyvp5im006didcx"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - ansi-terminal base containers lens linear optparse-applicative - random stm time-units vty + ansi-terminal base containers linear microlens microlens-th + optparse-applicative random stm time-units vty ]; executableHaskellDepends = [ - ansi-terminal base containers lens linear optparse-applicative - random stm time-units vty + ansi-terminal base containers linear microlens microlens-th + optparse-applicative random stm time-units vty ]; description = "A horizontal version of tetris for braille users"; license = lib.licenses.bsd3; @@ -42305,7 +42308,6 @@ self: { ]; description = "Implementation of the BGAPI serial protocol"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "bglibtest"; }) {}; @@ -42356,9 +42358,7 @@ self: { ]; description = "Simple terminal GUI for local hoogle"; license = "(BSD-3-Clause OR Apache-2.0)"; - hydraPlatforms = lib.platforms.none; mainProgram = "bhoogle"; - broken = true; }) {}; "bibdb" = callPackage @@ -42471,7 +42471,6 @@ self: { description = "Prototype Implementation of Combining Syntactic and Semantic Bidirectionalization (ICFP'10)"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "bidispec" = callPackage @@ -42521,8 +42520,8 @@ self: { }: mkDerivation { pname = "bifunctors"; - version = "5.5.13"; - sha256 = "1myvlzxk9xrm6vf9863wnv8py3ccgfxqxyc0sqxz0v3rwfnjgk16"; + version = "5.5.14"; + sha256 = "0r4jd4s66xvnx0bk75rz0cwnf6cr0lgx3dxrqdv3ppkwqk81c0ak"; libraryHaskellDepends = [ base base-orphans comonad containers tagged template-haskell th-abstraction transformers @@ -42669,24 +42668,6 @@ self: { }) {}; "bimap" = callPackage - ({ mkDerivation, base, containers, deepseq, exceptions, QuickCheck - , template-haskell - }: - mkDerivation { - pname = "bimap"; - version = "0.4.0"; - sha256 = "1794iykd7rhj29y0w4vyjyn6wnw28hi8sxzvm1j5ivdzmf39d8yi"; - revision = "1"; - editedCabalFile = "111wyqh17a6pkjhyaz8n1891m69hwr2gybqcpacw4xdmarxmi7f5"; - libraryHaskellDepends = [ base containers deepseq exceptions ]; - testHaskellDepends = [ - base containers deepseq exceptions QuickCheck template-haskell - ]; - description = "Bidirectional mapping between two key types"; - license = lib.licenses.bsd3; - }) {}; - - "bimap_0_5_0" = callPackage ({ mkDerivation, base, containers, deepseq, exceptions, QuickCheck , template-haskell }: @@ -42700,7 +42681,6 @@ self: { ]; description = "Bidirectional mapping between two key types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "bimap-server" = callPackage @@ -43034,8 +43014,6 @@ self: { ]; description = "Read and write values of types that implement Binary"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "binary-list" = callPackage @@ -43076,7 +43054,7 @@ self: { pname = "binary-orphans"; version = "1.0.3"; sha256 = "0b302hhjaybwbnpzrd8qmdp24g2xj2svib34zfxqqxg67j159rg2"; - libraryHaskellDepends = [ base binary OneTuple transformers ]; + libraryHaskellDepends = [ base binary transformers ]; testHaskellDepends = [ base binary OneTuple QuickCheck quickcheck-instances tagged tasty tasty-quickcheck @@ -43130,6 +43108,8 @@ self: { ]; description = "Extends binary with parsec/attoparsec style parsing combinators"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "binary-protocol" = callPackage @@ -43260,6 +43240,8 @@ self: { testHaskellDepends = [ base bytestring ]; description = "Binary deserialisation using strict ByteStrings"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "binary-tagged" = callPackage @@ -44309,6 +44291,7 @@ self: { description = "Encode precise binary representations directly in types"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "bins" = callPackage @@ -44327,8 +44310,6 @@ self: { ]; description = "Aggregate continuous values into discrete bins"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "binsm" = callPackage @@ -44346,7 +44327,9 @@ self: { ]; description = "binary files splitter and merger"; license = "unknown"; + hydraPlatforms = lib.platforms.none; mainProgram = "binsm"; + broken = true; }) {}; "bio" = callPackage @@ -44597,6 +44580,8 @@ self: { pname = "bip32"; version = "0.2"; sha256 = "1ji71m6mdnhqscadrmxs4pwb18cc5j91dhlnqs3d76gk32fyy32q"; + revision = "1"; + editedCabalFile = "0069h82abfgy824zpkdfljwm2y6g7hm5q7yjxrrc08abdn72dkg2"; libraryHaskellDepends = [ base base58-bytestring binary bitcoin-hash bitcoin-keys bytestring ]; @@ -44677,6 +44662,8 @@ self: { testHaskellDepends = [ base ]; description = "Birds of Paradise"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "bisc" = callPackage @@ -44701,25 +44688,24 @@ self: { }) {}; "biscuit-haskell" = callPackage - ({ mkDerivation, aeson, async, attoparsec, base, base16-bytestring - , base64, bytestring, cereal, containers, criterion, cryptonite - , lens, lens-aeson, memory, mtl, parser-combinators, protobuf - , random, regex-tdfa, tasty, tasty-hunit, template-haskell, text + ({ mkDerivation, aeson, async, base, base16, base64, bytestring + , cereal, containers, criterion, cryptonite, lens, lens-aeson + , megaparsec, memory, mtl, parser-combinators, protobuf, random + , regex-tdfa, tasty, tasty-hunit, template-haskell, text , th-lift-instances, time, validation-selective }: mkDerivation { pname = "biscuit-haskell"; - version = "0.2.1.0"; - sha256 = "12c5cl3gc0518b7vrzc0v56ch8rlsc5xvdmhj8lxr085xm16dqng"; + version = "0.3.0.0"; + sha256 = "07n5s6rlalxq12ha8fk8j2ghq015p56n23pdp4y5ba3ax58lgg9b"; libraryHaskellDepends = [ - async attoparsec base base16-bytestring base64 bytestring cereal - containers cryptonite memory mtl parser-combinators protobuf random - regex-tdfa template-haskell text th-lift-instances time - validation-selective + async base base16 base64 bytestring cereal containers cryptonite + megaparsec memory mtl parser-combinators protobuf random regex-tdfa + template-haskell text th-lift-instances time validation-selective ]; testHaskellDepends = [ - aeson async attoparsec base base16-bytestring base64 bytestring - cereal containers cryptonite lens lens-aeson mtl parser-combinators + aeson async base base16 base64 bytestring cereal containers + cryptonite lens lens-aeson megaparsec mtl parser-combinators protobuf random tasty tasty-hunit template-haskell text th-lift-instances time validation-selective ]; @@ -44737,13 +44723,13 @@ self: { }: mkDerivation { pname = "biscuit-servant"; - version = "0.2.1.0"; - sha256 = "1sw496bfvh5kfyb1f0sczjayb5b2vq14x2vdmww99knjjvn0ibxp"; + version = "0.3.0.0"; + sha256 = "1dky9skcfd25pf0plfd5x7framqsvw98ab96xxmnsy6825h6qazd"; libraryHaskellDepends = [ base biscuit-haskell bytestring mtl servant-server text wai ]; testHaskellDepends = [ - base biscuit-haskell bytestring hspec http-client servant + base biscuit-haskell bytestring hspec http-client mtl servant servant-client servant-client-core servant-server text time warp ]; description = "Servant support for the Biscuit security token"; @@ -45165,7 +45151,6 @@ self: { ]; description = "Resources for working with miniscript, and script descriptors"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "bitcoin-tx" = callPackage @@ -45520,6 +45505,8 @@ self: { ]; description = "Fast, packed, strict and lazy bit streams with stream fusion"; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "bitstring" = callPackage @@ -45616,8 +45603,8 @@ self: { pname = "bitwise"; version = "1.0.0.1"; sha256 = "03xyzdkyb99gvm9g5chl07rqbnm7qrxba7wgmrfmal0rkwm0ibkn"; - revision = "5"; - editedCabalFile = "0qfg5kwpavyikgyazwz8mwaykw5j6f3b1i5m0khdja4jbb3f1h04"; + revision = "6"; + editedCabalFile = "0m4swiml8zggzvwzip2yw77y6crhf10a7imy6fj5yq0b9vd2mqkf"; libraryHaskellDepends = [ array base bytestring ]; testHaskellDepends = [ base QuickCheck ]; benchmarkHaskellDepends = [ array base bytestring criterion ]; @@ -45984,6 +45971,7 @@ self: { ]; description = "Auto-generated interface to Fortran BLAS via comfort-array"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "blas-ffi" = callPackage @@ -46191,7 +46179,6 @@ self: { description = "Some contributions to add handy things to blaze html"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "blaze-html-hexpat" = callPackage @@ -47053,7 +47040,6 @@ self: { ]; description = "Generate CSV Exports of Your BNB Staking Rewards"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "bnb-staking-csvs"; }) {}; @@ -47102,6 +47088,7 @@ self: { ]; description = "Three games for inclusion in a web server"; license = "GPL"; + hydraPlatforms = lib.platforms.none; mainProgram = "board-games"; }) {}; @@ -47413,7 +47400,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "readme"; - broken = true; }) {}; "bookkeeper-permissions" = callPackage @@ -47495,6 +47481,8 @@ self: { ]; description = "Logical combinatory operations dealing with datatypes representing booleans by their constructors"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "boolean-list" = callPackage @@ -47634,6 +47622,22 @@ self: { license = lib.licenses.bsd3; }) {}; + "boomerang_1_4_8_1" = callPackage + ({ mkDerivation, base, mtl, semigroups, template-haskell, text + , th-abstraction + }: + mkDerivation { + pname = "boomerang"; + version = "1.4.8.1"; + sha256 = "1hal4z1c1skqjq7vvjql0gm2rhfgrrlj29rgchjwlr2hm22zgnjp"; + libraryHaskellDepends = [ + base mtl semigroups template-haskell text th-abstraction + ]; + description = "Library for invertible parsing and printing"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "boomslang" = callPackage ({ mkDerivation, base, containers, data-accessor , data-accessor-template, font-opengl-basic4x6, GLFW-b, MonadRandom @@ -47688,7 +47692,6 @@ self: { ]; description = "Mathematically sound sound synthesis"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "perfprof"; }) {}; @@ -47728,7 +47731,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "demo-app"; - broken = true; }) {}; "boots-cloud" = callPackage @@ -47871,22 +47873,22 @@ self: { }) {}; "borsh" = callPackage - ({ mkDerivation, base, bytestring, containers, generics-sop, memory + ({ mkDerivation, base, bytestring, containers, generics-sop , optics-core, profunctors, QuickCheck, quickcheck-instances , sop-core, tasty, tasty-quickcheck, text, vector, wide-word }: mkDerivation { pname = "borsh"; - version = "0.1.0"; - sha256 = "0nyv91sn2v8m1zlp789v85dm9n21k9gb532rkzhdds5fpvqa6w3z"; + version = "0.2.0"; + sha256 = "0jvyjv7wg8a9f4wncxh3ddrqhnk7wdj45fyz29arnfj4hwdqijj3"; libraryHaskellDepends = [ - base bytestring containers generics-sop memory sop-core text vector + base bytestring containers generics-sop sop-core text vector wide-word ]; testHaskellDepends = [ base bytestring containers generics-sop optics-core profunctors QuickCheck quickcheck-instances sop-core tasty tasty-quickcheck - text + text wide-word ]; description = "Implementation of BORSH serialisation"; license = lib.licenses.bsd3; @@ -47916,6 +47918,7 @@ self: { libraryHaskellDepends = [ base semigroups zero ]; description = "Like Maybe, but with a different Monoid instance"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "botpp" = callPackage @@ -48075,8 +48078,6 @@ self: { libraryHaskellDepends = [ base lens ]; description = "A generic boundingbox for an arbitrary vector"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "bower-json_1_0_0_1" = callPackage @@ -48135,7 +48136,6 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "bowntz"; - broken = true; }) {}; "box" = callPackage @@ -48415,8 +48415,8 @@ self: { }: mkDerivation { pname = "breakpoint"; - version = "0.1.1.1"; - sha256 = "1hyfsn4wgiz2zzlihncq9lj18k7nzd4wq2z53xbnp1palspjqjp2"; + version = "0.1.2.0"; + sha256 = "1hk9mjijxvqjzcfqllzi53rmxiyggbxash05jbb742wrq832h2xw"; libraryHaskellDepends = [ ansi-terminal base containers ghc haskeline mtl pretty-simple template-haskell text transformers @@ -48466,32 +48466,6 @@ self: { broken = true; }) {}; - "brick" = callPackage - ({ mkDerivation, base, bytestring, config-ini, containers - , contravariant, data-clist, deepseq, directory, dlist, exceptions - , filepath, microlens, microlens-mtl, microlens-th, QuickCheck, stm - , template-haskell, text, text-zipper, transformers, unix, vector - , vty, word-wrap - }: - mkDerivation { - pname = "brick"; - version = "0.68.1"; - sha256 = "17pzp9p4rmd82smxwz2kh1jjd5ssy5b86jnv7a4ac1g1zgnnki0r"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base bytestring config-ini containers contravariant data-clist - deepseq directory dlist exceptions filepath microlens microlens-mtl - microlens-th stm template-haskell text text-zipper transformers - unix vector vty word-wrap - ]; - testHaskellDepends = [ - base containers microlens QuickCheck vector - ]; - description = "A declarative terminal user interface library"; - license = lib.licenses.bsd3; - }) {}; - "brick_0_70_1" = callPackage ({ mkDerivation, base, bytestring, config-ini, containers , contravariant, data-clist, deepseq, directory, dlist, exceptions @@ -48546,7 +48520,7 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "brick_1_4" = callPackage + "brick" = callPackage ({ mkDerivation, base, bimap, bytestring, config-ini, containers , contravariant, data-clist, deepseq, directory, exceptions , filepath, microlens, microlens-mtl, microlens-th, mtl, QuickCheck @@ -48570,6 +48544,32 @@ self: { ]; description = "A declarative terminal user interface library"; license = lib.licenses.bsd3; + }) {}; + + "brick_1_5" = callPackage + ({ mkDerivation, base, bimap, bytestring, config-ini, containers + , contravariant, data-clist, deepseq, directory, exceptions + , filepath, microlens, microlens-mtl, microlens-th, mtl, QuickCheck + , stm, template-haskell, text, text-zipper, unix, vector, vty + , word-wrap + }: + mkDerivation { + pname = "brick"; + version = "1.5"; + sha256 = "0kszp6yrpqc9v87m38rladhmn8xcdbrrh05xr6fi936n34bhi432"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bimap bytestring config-ini containers contravariant + data-clist deepseq directory exceptions filepath microlens + microlens-mtl microlens-th mtl stm template-haskell text + text-zipper unix vector vty word-wrap + ]; + testHaskellDepends = [ + base containers microlens QuickCheck vector vty + ]; + description = "A declarative terminal user interface library"; + license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; }) {}; @@ -48610,6 +48610,8 @@ self: { free vector vty ]; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "brick-panes" = callPackage @@ -48618,8 +48620,8 @@ self: { }: mkDerivation { pname = "brick-panes"; - version = "1.0.0.2"; - sha256 = "1g6q9pnc0a0fnp2qaxqxp8qdriifi6w362ky36csxl633nl6gsw0"; + version = "1.0.0.3"; + sha256 = "0qqm896gyabdscngafgmf4avajs5szds1l6fs0bw2p11xiirhc14"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base brick containers microlens vty ]; @@ -48630,9 +48632,7 @@ self: { testHaskellDepends = [ base ]; description = "Panes library for Brick providing composition and isolation for TUI apps"; license = lib.licenses.isc; - hydraPlatforms = lib.platforms.none; mainProgram = "mywork-example"; - broken = true; }) {}; "brick-skylighting" = callPackage @@ -48650,6 +48650,8 @@ self: { ]; description = "Show syntax-highlighted text in your Brick UI"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "brick-skylighting_1_0" = callPackage @@ -48668,6 +48670,7 @@ self: { description = "Show syntax-highlighted text in your Brick UI"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "bricks" = callPackage @@ -48883,6 +48886,7 @@ self: { ]; description = "Haskell source code formatter"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "brittany"; }) {}; @@ -48920,6 +48924,7 @@ self: { ]; description = "Conduit-based parallel streaming code for broadcast-chan"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "broadcast-chan-pipes" = callPackage @@ -48938,6 +48943,7 @@ self: { ]; description = "Pipes-based parallel streaming code for broadcast-chan"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "broadcast-chan-tests" = callPackage @@ -48962,6 +48968,8 @@ self: { ]; description = "Helpers for generating tests for broadcast-chan"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "broccoli" = callPackage @@ -49374,7 +49382,6 @@ self: { description = "A backend agnostic, concurrent BTree"; license = "LGPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "btrfs" = callPackage @@ -49728,10 +49735,10 @@ self: { }: mkDerivation { pname = "bugzilla-redhat"; - version = "1.0.0"; - sha256 = "1g95j03y2sg1fwdf48a05nijqllkd0m7scn1wbfyzvb57q716hlx"; - revision = "5"; - editedCabalFile = "13fmsnvjgg2hh5hqr5mvyykafpf770lrwiq7g67i75w6594nippn"; + version = "1.0.1"; + sha256 = "19dir39yxqd5psf3gj4f3vhcbdad1np7374nkxfk0gg4xxvywcvi"; + revision = "1"; + editedCabalFile = "1yai855w6s9xjyswpx206hnryi1y6kda1310vcfff0ghl4gdxpxw"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -50052,6 +50059,7 @@ self: { description = "Haskell interface to the Bus Pirate binary interface"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "buster" = callPackage @@ -50162,6 +50170,7 @@ self: { ]; description = "Chops a command or program invocation into digestable pieces"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "butter" = callPackage @@ -50315,6 +50324,7 @@ self: { ]; description = "a bitvector datatype that is parameterized by the vector width"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "bv-sized-lens" = callPackage @@ -50326,6 +50336,7 @@ self: { libraryHaskellDepends = [ base bv-sized lens parameterized-utils ]; description = "Well-typed lenses for bv-sized bitvectors"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "by-other-names" = callPackage @@ -50334,8 +50345,8 @@ self: { }: mkDerivation { pname = "by-other-names"; - version = "1.2.1.0"; - sha256 = "1l6b47qxr8hidknl2r7gwp9civlz450z4nxyv98nfkh86bhsdnfm"; + version = "1.2.3.0"; + sha256 = "1hr3r18i0vi86pdcwdlj6116m58bkpyd1x2r4rhf4yv2lsak7sb7"; libraryHaskellDepends = [ aeson base indexed-traversable template-haskell text ]; @@ -50447,8 +50458,8 @@ self: { }: mkDerivation { pname = "bytebuild"; - version = "0.3.11.0"; - sha256 = "0yxss8r5msgbp812xb0k1xsmil02zmh7n8nh7jdfkm8byf3l4saf"; + version = "0.3.12.0"; + sha256 = "0n87jhn46yafnd3kjy07nxs2f36s99xk89x6cwkhiwhvz5hw6c2v"; libraryHaskellDepends = [ base byteslice bytestring haskell-src-meta integer-logarithms natural-arithmetic primitive primitive-offset primitive-unlifted @@ -50628,6 +50639,30 @@ self: { license = lib.licenses.bsd3; }) {}; + "byteslice_0_2_9_0" = callPackage + ({ mkDerivation, base, bytestring, gauge, primitive, primitive-addr + , primitive-unlifted, quickcheck-classes, run-st, tasty + , tasty-hunit, tasty-quickcheck, text, text-short, transformers + , tuples, vector + }: + mkDerivation { + pname = "byteslice"; + version = "0.2.9.0"; + sha256 = "0rqlpqcnyfwl2m4jy8k7n062drdwpvd3j622f4z4fxyhd84dxv5y"; + libraryHaskellDepends = [ + base bytestring primitive primitive-addr primitive-unlifted run-st + text text-short tuples vector + ]; + testHaskellDepends = [ + base bytestring primitive quickcheck-classes tasty tasty-hunit + tasty-quickcheck text transformers + ]; + benchmarkHaskellDepends = [ base gauge primitive ]; + description = "Slicing managed and unmanaged memory"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "bytesmith" = callPackage ({ mkDerivation, base, byte-order, byteslice, bytestring , contiguous, gauge, primitive, run-st, tasty, tasty-hunit @@ -51239,6 +51274,8 @@ self: { librarySystemDepends = [ bzip2 ]; description = "Compression and decompression in the bzip2 format"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) bzip2;}; "bzlib-conduit" = callPackage @@ -51719,19 +51756,17 @@ self: { "cabal-cache" = callPackage ({ mkDerivation, aeson, amazonka, amazonka-core, amazonka-s3 , antiope-core, antiope-optparse-applicative, antiope-s3, base - , bytestring, containers, cryptonite, deepseq, directory - , exceptions, filepath, generic-lens, hedgehog, hspec - , hspec-discover, http-client, http-client-tls, http-types + , bytestring, cabal-install-parsers, containers, cryptonite + , deepseq, directory, exceptions, filepath, generic-lens, hedgehog + , hspec, hspec-discover, http-client, http-client-tls, http-types , hw-hspec-hedgehog, lens, mtl, network-uri, optparse-applicative , process, raw-strings-qq, relation, resourcet, stm, stringsearch , temporary, text, topograph, transformers, unliftio }: mkDerivation { pname = "cabal-cache"; - version = "1.0.4.0"; - sha256 = "1qh2cy0mwslqfdw747jkvvfbdma0c3mmjd5kpv2s5slz0m7m8l9j"; - revision = "1"; - editedCabalFile = "049x7hz1173650bsqp8ff2yv7gn6v1akl3iz24xx5q8ql1p0silc"; + version = "1.0.5.4"; + sha256 = "15jg140ly7rska7v8ihvd383q9lj4i5c18rzjad4yi8f78jjciqb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -51743,9 +51778,10 @@ self: { ]; executableHaskellDepends = [ aeson amazonka amazonka-core antiope-core - antiope-optparse-applicative base bytestring containers directory - exceptions generic-lens http-types lens mtl optparse-applicative - resourcet stm stringsearch temporary text unliftio + antiope-optparse-applicative base bytestring cabal-install-parsers + containers directory exceptions filepath generic-lens http-types + lens mtl optparse-applicative resourcet stm stringsearch temporary + text unliftio ]; testHaskellDepends = [ aeson antiope-core base bytestring filepath hedgehog hspec @@ -51783,25 +51819,6 @@ self: { }) {}; "cabal-clean" = callPackage - ({ mkDerivation, base, containers, directory, filepath, mtl - , optparse-applicative, pretty-terminal, process, split, string-qq - }: - mkDerivation { - pname = "cabal-clean"; - version = "0.1.20220814"; - sha256 = "10kw1d6gxksgawpklqmjhbdc507zcxsghnf6vjwiv2wikrmz8b0d"; - isLibrary = false; - isExecutable = true; - executableHaskellDepends = [ - base containers directory filepath mtl optparse-applicative - pretty-terminal process split string-qq - ]; - description = "Remove outdated cabal build artefacts from `dist-newstyle`"; - license = lib.licenses.bsd3; - mainProgram = "cabal-clean"; - }) {}; - - "cabal-clean_0_2_20220819" = callPackage ({ mkDerivation, base, containers, directory, filemanip, filepath , mtl, optparse-applicative, pretty-terminal, process, silently , split, string-qq @@ -51819,7 +51836,6 @@ self: { ]; description = "Remove outdated cabal build artefacts from `dist-newstyle`"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "cabal-clean"; }) {}; @@ -51872,8 +51888,8 @@ self: { }: mkDerivation { pname = "cabal-debian"; - version = "5.2"; - sha256 = "0vin5nj673l5gyg2q3jjz8vxh6ajja5mh6k81j1ppihwscwmmz4p"; + version = "5.2.1"; + sha256 = "1fz71v2yx3rykvzswvqza5v9jwdhy2ahxj003gkkhfwfc2qjip3p"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -51915,8 +51931,6 @@ self: { libraryHaskellDepends = [ base Cabal QuickCheck ]; description = "QuickCheck for Cabal tests"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "cabal-dev" = callPackage @@ -52274,7 +52288,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "cabal"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.sternenseemann ]; broken = true; }) {Cabal-QuickCheck = null; Cabal-described = null; Cabal-tree-diff = null;}; @@ -52547,36 +52561,6 @@ self: { }) {}; "cabal-plan" = callPackage - ({ mkDerivation, aeson, ansi-terminal, async, base, base-compat - , base16-bytestring, bytestring, containers, directory, filepath - , mtl, optics-core, optparse-applicative, parsec, process - , semialign, singleton-bool, text, these, topograph, transformers - , vector - }: - mkDerivation { - pname = "cabal-plan"; - version = "0.7.2.1"; - sha256 = "0n45bakzf1r1nyvs76fmrj0cf74knqnpyb2i82baxia0falbp48r"; - revision = "1"; - editedCabalFile = "1pb8r65f279m9ps67mkkcbcpbprbj7pd12b9m2s64l8fgn9in422"; - configureFlags = [ "-fexe" ]; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base base16-bytestring bytestring containers directory - filepath text - ]; - executableHaskellDepends = [ - ansi-terminal async base base-compat bytestring containers - directory mtl optics-core optparse-applicative parsec process - semialign singleton-bool text these topograph transformers vector - ]; - description = "Library and utility for processing cabal's plan.json file"; - license = lib.licenses.gpl2Plus; - mainProgram = "cabal-plan"; - }) {}; - - "cabal-plan_0_7_2_3" = callPackage ({ mkDerivation, aeson, ansi-terminal, async, base, base-compat , base16-bytestring, bytestring, containers, directory, filepath , mtl, optics-core, optparse-applicative, parsec, process @@ -52601,7 +52585,6 @@ self: { ]; description = "Library and utility for processing cabal's plan.json file"; license = lib.licenses.gpl2Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "cabal-plan"; }) {}; @@ -52648,6 +52631,8 @@ self: { pname = "cabal-rpm"; version = "2.0.11.1"; sha256 = "07a2jnzldyva1smbxxdknimzydj2rhr7whhgh5q4nwkifkiliadv"; + revision = "1"; + editedCabalFile = "1dq6c9f0nm7a8nknc2haq79zkpkh1dgrkn2bixzsd16kmjjsl83m"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -52945,6 +52930,8 @@ self: { pname = "cabal2json"; version = "0.0.0.0"; sha256 = "19dy7x643243ryqcc4wimz0pm1f1m0bqb0w7as5jhpvnk7rz06zq"; + revision = "1"; + editedCabalFile = "1lxmdh6h2fxqxc275x5a64mwk8kk4kg67gwlsxsjq5ng0rkvpix2"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -52997,33 +52984,10 @@ self: { ''; description = "Convert Cabal files into Nix build instructions"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.sternenseemann ]; }) {}; "cabal2spec" = callPackage - ({ mkDerivation, base, Cabal, filepath, optparse-applicative, tasty - , tasty-golden, time - }: - mkDerivation { - pname = "cabal2spec"; - version = "2.6.2"; - sha256 = "0x1r01fk5mch76zindalvmlkfaca4y1x89zw2dm0d46fncsfgdrv"; - revision = "1"; - editedCabalFile = "196j1fga9cqlc0nbxbgl0c3g0ic8sf618whps95zzp58lac9dqak"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base Cabal filepath time ]; - executableHaskellDepends = [ - base Cabal filepath optparse-applicative - ]; - testHaskellDepends = [ base Cabal filepath tasty tasty-golden ]; - description = "Convert Cabal files into rpm spec files"; - license = lib.licenses.gpl3Only; - mainProgram = "cabal2spec"; - maintainers = [ lib.maintainers.peti ]; - }) {}; - - "cabal2spec_2_6_3" = callPackage ({ mkDerivation, base, Cabal, filepath, optparse-applicative, tasty , tasty-golden, time }: @@ -53042,7 +53006,6 @@ self: { testHaskellDepends = [ base Cabal filepath tasty tasty-golden ]; description = "Convert Cabal files into rpm spec files"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; mainProgram = "cabal2spec"; maintainers = [ lib.maintainers.peti ]; }) {}; @@ -53348,37 +53311,37 @@ self: { "cachix" = callPackage ({ mkDerivation, aeson, async, base, base64-bytestring, bytestring - , cachix-api, concurrent-extra, conduit, conduit-extra, containers - , cookie, cryptonite, dhall, directory, ed25519, either, extra - , filepath, fsnotify, hercules-ci-cnix-store, here, hspec - , hspec-discover, http-client, http-client-tls, http-conduit - , http-types, inline-c-cpp, katip, lukko, lzma-conduit, megaparsec - , memory, mmorph, netrc, nix, optparse-applicative, pretty-terminal - , prettyprinter, process, protolude, resourcet, retry - , safe-exceptions, servant, servant-auth, servant-auth-client - , servant-client, servant-client-core, servant-conduit, stm - , stm-chans, stm-conduit, systemd, temporary, text, time, unix - , unordered-containers, uri-bytestring, uuid, vector, versions - , websockets, wuss + , cachix-api, concurrent-extra, conduit, conduit-extra + , conduit-zstd, containers, cookie, cryptonite, dhall, directory + , ed25519, either, extra, filepath, fsnotify + , hercules-ci-cnix-store, here, hspec, hspec-discover, http-client + , http-client-tls, http-conduit, http-types, inline-c-cpp, katip + , lukko, lzma-conduit, megaparsec, memory, mmorph, netrc, nix + , optparse-applicative, pretty-terminal, prettyprinter, process + , protolude, resourcet, retry, safe-exceptions, servant + , servant-auth, servant-auth-client, servant-client + , servant-client-core, servant-conduit, stm, stm-chans, stm-conduit + , systemd, temporary, text, time, unix, unordered-containers + , uri-bytestring, uuid, vector, versions, websockets, wuss }: mkDerivation { pname = "cachix"; - version = "1.0.1"; - sha256 = "0jgs43h6pmyyq3r1sc7d27zsdxr5fbimgdvl8r8l1fdw1nlb322q"; + version = "1.1"; + sha256 = "1pqh02jqkd90zxjfyjknavr8zly5yp046ac727klxq2x8gw9hq5r"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson async base base64-bytestring bytestring cachix-api - concurrent-extra conduit conduit-extra containers cookie cryptonite - dhall directory ed25519 either extra filepath fsnotify - hercules-ci-cnix-store here http-client http-client-tls + concurrent-extra conduit conduit-extra conduit-zstd containers + cookie cryptonite dhall directory ed25519 either extra filepath + fsnotify hercules-ci-cnix-store here http-client http-client-tls http-conduit http-types inline-c-cpp katip lukko lzma-conduit megaparsec memory mmorph netrc optparse-applicative pretty-terminal prettyprinter process protolude resourcet retry safe-exceptions servant servant-auth servant-auth-client servant-client - servant-client-core servant-conduit stm stm-conduit systemd - temporary text time unix unordered-containers uri-bytestring uuid - vector versions websockets wuss + servant-client-core servant-conduit stm stm-chans stm-conduit + systemd temporary text time unix unordered-containers + uri-bytestring uuid vector versions websockets wuss ]; libraryPkgconfigDepends = [ nix ]; executableHaskellDepends = [ @@ -53387,8 +53350,8 @@ self: { ]; executableToolDepends = [ hspec-discover ]; testHaskellDepends = [ - base cachix-api directory here hspec protolude servant-auth-client - temporary + aeson base bytestring cachix-api dhall directory extra here hspec + protolude servant-auth-client servant-client-core temporary ]; description = "Command line client for Nix binary cache hosting https://cachix.org"; license = lib.licenses.asl20; @@ -53399,22 +53362,23 @@ self: { ({ mkDerivation, aeson, async, base, base16-bytestring, bytestring , conduit, cookie, cryptonite, deepseq, deriving-aeson, exceptions , hspec, hspec-discover, http-api-data, http-media, jose, lens - , memory, nix-narinfo, protolude, resourcet, servant, servant-auth - , servant-auth-swagger, servant-client, servant-swagger - , servant-swagger-ui-core, string-conv, swagger2, text, time - , transformers, unordered-containers, uuid, websockets + , memory, nix-narinfo, protolude, resourcet, safe-exceptions + , servant, servant-auth, servant-auth-swagger, servant-client + , servant-swagger, servant-swagger-ui-core, stm-chans, string-conv + , swagger2, text, time, transformers, unordered-containers, uuid + , websockets }: mkDerivation { pname = "cachix-api"; - version = "1.0.1"; - sha256 = "1bv4pbzqzkfll8zm9qdrwbpj80jgdk5n0jby52j8szkvbj4rd357"; + version = "1.1"; + sha256 = "19zh0znah72mqkb4ns4288wq0y02r4ah0pbfvn68lrc02yjf9bhs"; libraryHaskellDepends = [ aeson async base base16-bytestring bytestring conduit cookie cryptonite deepseq deriving-aeson exceptions http-api-data - http-media jose lens memory nix-narinfo protolude resourcet servant - servant-auth servant-auth-swagger servant-client string-conv - swagger2 text time transformers unordered-containers uuid - websockets + http-media jose lens memory nix-narinfo protolude resourcet + safe-exceptions servant servant-auth servant-auth-swagger + servant-client stm-chans string-conv swagger2 text time + transformers unordered-containers uuid websockets ]; testHaskellDepends = [ aeson base base16-bytestring bytestring conduit cookie cryptonite @@ -53515,7 +53479,6 @@ self: { ]; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "cairo" = callPackage @@ -53731,8 +53694,8 @@ self: { }: mkDerivation { pname = "calamity"; - version = "0.7.0.1"; - sha256 = "16hk4c8yry3yrw2isjd2lamdadvfqm210cnpiyllp9lfgn24zdph"; + version = "0.7.1.0"; + sha256 = "17jzv3di73d9pdxcp9fmprkyff1jjkmxywpf1g5a9iq0yc6l3q7f"; libraryHaskellDepends = [ aeson aeson-optics async base bytestring calamity-commands colour concurrent-extra connection containers data-default-class @@ -53745,8 +53708,6 @@ self: { ]; description = "A library for writing discord bots in haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "calamity-commands" = callPackage @@ -53906,29 +53867,6 @@ self: { }) {}; "call-alloy" = callPackage - ({ mkDerivation, base, bytestring, containers, directory, extra - , file-embed, filepath, hashable, hspec, mtl, process, split - , trifecta, unix - }: - mkDerivation { - pname = "call-alloy"; - version = "0.3.0.3"; - sha256 = "1clzw0sk13gzwk2ikxlz7p0f70pb2246pnd01ggjm0nrfykri18p"; - libraryHaskellDepends = [ - base bytestring containers directory extra file-embed filepath - hashable mtl process split trifecta unix - ]; - testHaskellDepends = [ - base bytestring containers directory extra file-embed filepath - hashable hspec mtl process split trifecta unix - ]; - description = "A simple library to call Alloy given a specification"; - license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {}; - - "call-alloy_0_4_0_1" = callPackage ({ mkDerivation, async, base, bytestring, containers, directory , extra, filepath, hspec, mtl, process, split, transformers , trifecta, unix @@ -54066,7 +54004,6 @@ self: { badPlatforms = [ "aarch64-linux" ]; hydraPlatforms = lib.platforms.none; mainProgram = "camfort"; - broken = true; }) {inherit (pkgs) flint;}; "camh" = callPackage @@ -54126,8 +54063,8 @@ self: { }: mkDerivation { pname = "candid"; - version = "0.3.2"; - sha256 = "0p4fxkm3yhlx52g15hcbjlhqmx7nwkdw0rzlr0m11v85y5khz7yd"; + version = "0.4"; + sha256 = "17l3qyprkn4ffnpxxh1359f61f4qpbmbxwaclxiqr8aahjsk2d2z"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -54196,8 +54133,6 @@ self: { benchmarkHaskellDepends = [ base bytestring containers criterion ]; description = "Canonical JSON for signing and hashing JSON values"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "canteven-config" = callPackage @@ -54421,6 +54356,8 @@ self: { ]; description = "OTP-like supervision trees in Haskell"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "capnp" = callPackage @@ -54591,7 +54528,6 @@ self: { description = "A package for integrating a variety of captcha solving services"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "car-pool" = callPackage @@ -54913,6 +54849,8 @@ self: { ]; description = "CASA Abbreviations and Acronyms"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "casa-client" = callPackage @@ -55163,15 +55101,13 @@ self: { }: mkDerivation { pname = "cases"; - version = "0.1.4.1"; - sha256 = "16bl4qzjfwkbzacrj33myakqcmg2j9fgzdnykwpnnqc2vikdpn0z"; + version = "0.1.4.2"; + sha256 = "0sla22xr1b8b1655l2rzhy31lxirahypgri0bphd9l6jy874mr40"; libraryHaskellDepends = [ attoparsec base text ]; testHaskellDepends = [ HTF HUnit QuickCheck rerebase ]; benchmarkHaskellDepends = [ gauge mwc-random rerebase ]; description = "A converter for spinal, snake and camel cases"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "cash" = callPackage @@ -55398,6 +55334,7 @@ self: { description = "Haskell client for Cassandra's CQL protocol"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "cassandra-thrift" = callPackage @@ -55799,6 +55736,8 @@ self: { libraryHaskellDepends = [ base bytestring comonad text ]; description = "Highbrow approach to type-safe printf format specifications"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "category-traced" = callPackage @@ -55924,27 +55863,6 @@ self: { }) {}; "cayley-client" = callPackage - ({ mkDerivation, aeson, attoparsec, base, binary, bytestring - , exceptions, hspec, http-client, http-conduit, lens, lens-aeson - , mtl, text, transformers, unordered-containers, vector - }: - mkDerivation { - pname = "cayley-client"; - version = "0.4.17"; - sha256 = "1mc4r45vlwbrcjz33akqs5kh27wc97b8dg1byanvyjyvsvabg5bb"; - libraryHaskellDepends = [ - aeson attoparsec base binary bytestring exceptions http-client - http-conduit lens lens-aeson mtl text transformers - unordered-containers vector - ]; - testHaskellDepends = [ aeson base hspec unordered-containers ]; - description = "A Haskell client for the Cayley graph database"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {}; - - "cayley-client_0_4_19_2" = callPackage ({ mkDerivation, aeson, attoparsec, base, binary, bytestring , exceptions, hspec, http-client, http-conduit, lens, lens-aeson , mtl, text, transformers, unordered-containers, vector @@ -56183,6 +56101,41 @@ self: { mainProgram = "cdeps"; }) {}; + "cdp" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, blaze-html + , blaze-markup, bytestring, containers, data-default, directory + , extra, filepath, hspec, http-conduit, monad-loops, mtl + , network-uri, process, random, text, utf8-string, vector + , websockets + }: + mkDerivation { + pname = "cdp"; + version = "0.0.2.0"; + sha256 = "1pi163mysavwhk9s2a78ldbnw0480b9vmvgyr4m426asc17g1kc9"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base bytestring containers data-default directory extra + filepath http-conduit monad-loops mtl network-uri process random + text vector websockets + ]; + executableHaskellDepends = [ + aeson base base64-bytestring blaze-html blaze-markup bytestring + containers data-default directory extra filepath http-conduit + monad-loops mtl network-uri process random text utf8-string vector + websockets + ]; + testHaskellDepends = [ + aeson base bytestring containers data-default directory extra + filepath hspec http-conduit monad-loops mtl network-uri process + random text vector websockets + ]; + description = "A library for the Chrome Devtools Protocol"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "cedict" = callPackage ({ mkDerivation, base, bytestring, containers, mtl, parsec , utf8-string @@ -56756,6 +56709,8 @@ self: { ]; description = "A library for writing CGI programs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "cgi-undecidable" = callPackage @@ -56767,6 +56722,7 @@ self: { libraryHaskellDepends = [ base cgi mtl ]; description = "Undecidable instances for the cgi package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "cgi-utils" = callPackage @@ -56781,7 +56737,6 @@ self: { description = "Simple modular utilities for CGI/FastCGI (sessions, etc.)"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "cgrep" = callPackage @@ -56841,26 +56796,33 @@ self: { }) {}; "chainweb-mining-client" = callPackage - ({ mkDerivation, aeson, async, base, bytes, bytestring, Cabal - , configuration-tools, connection, containers, cryptonite - , exceptions, hashable, hostaddress, http-client, http-client-tls - , http-types, lens, loglevel, memory, mwc-random, process, retry - , stm, streaming, streaming-events, text, time + ({ mkDerivation, aeson, async, attoparsec, base, base16-bytestring + , bytes, bytestring, Cabal, clock, configuration-tools, connection + , cryptonite, exceptions, hashable, hostaddress, http-client + , http-client-tls, http-types, lens, loglevel, memory, mwc-random + , process, QuickCheck, quickcheck-instances, retry, stm, streaming + , streaming-commons, streaming-events, sydtest, text, time , unordered-containers, wai-extra }: mkDerivation { pname = "chainweb-mining-client"; - version = "0.2"; - sha256 = "1zbqbc3icgz1fb0fgpfi1cf1i7pz2lf3wd82671ks1yixf893ypm"; + version = "0.5"; + sha256 = "1z14rkla1w01pzv894wba8kp1v5zwmzgjnadjkwczvfc9fk6i90h"; isLibrary = false; isExecutable = true; setupHaskellDepends = [ base Cabal configuration-tools ]; executableHaskellDepends = [ - aeson async base bytes bytestring configuration-tools connection - containers cryptonite exceptions hashable hostaddress http-client - http-client-tls http-types lens loglevel memory mwc-random process - retry stm streaming streaming-events text time unordered-containers - wai-extra + aeson async attoparsec base base16-bytestring bytes bytestring + clock configuration-tools connection cryptonite exceptions hashable + hostaddress http-client http-client-tls http-types lens loglevel + memory mwc-random process retry stm streaming streaming-commons + streaming-events text time unordered-containers wai-extra + ]; + testHaskellDepends = [ + aeson base base16-bytestring bytes bytestring clock + configuration-tools cryptonite exceptions hashable hostaddress + memory QuickCheck quickcheck-instances stm streaming-commons + sydtest text time ]; description = "Mining Client for Kadena Chainweb"; license = lib.licenses.bsd3; @@ -56906,7 +56868,9 @@ self: { ]; description = "A REST Web Api server template for building (micro)services"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "chakra-exe"; + broken = true; }) {}; "chalk" = callPackage @@ -57219,8 +57183,6 @@ self: { ]; description = "Charting library targetting SVGs"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "chart-svg-various" = callPackage @@ -57797,8 +57759,8 @@ self: { }: mkDerivation { pname = "chez-grater"; - version = "0.1.1"; - sha256 = "0yxc054mvq0016a8jr6mv9j4l971llmm2cp1gya6by20icav1z54"; + version = "0.1.2"; + sha256 = "0i84fsgh7dsay1p2rw86fxrqasz7w8czfz5jri4ry4ac47ag0mf7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -57807,8 +57769,8 @@ self: { scalpel text unordered-containers ]; executableHaskellDepends = [ - aeson aeson-pretty base bytestring network-uri optparse-applicative - text + aeson aeson-pretty base bytestring case-insensitive network-uri + optparse-applicative text ]; testHaskellDepends = [ attoparsec base bytestring case-insensitive containers file-embed @@ -57843,7 +57805,6 @@ self: { description = "A tmux client for Polysemy"; license = "BSD-2-Clause-Patent"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "chiasma-test" = callPackage @@ -57909,6 +57870,8 @@ self: { libraryToolDepends = [ c2hs ]; description = "Haskell bindings for Chipmunk2D physics engine"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "chitauri" = callPackage @@ -58071,7 +58034,6 @@ self: { description = "A mirror implementation of chp that generates a specification of the program"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "chp-transformers" = callPackage @@ -58100,7 +58062,6 @@ self: { ]; description = "Constraint Handling Rules"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "chr-data" = callPackage @@ -58119,8 +58080,6 @@ self: { ]; description = "Datatypes required for chr library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "chr-lang" = callPackage @@ -58221,6 +58180,7 @@ self: { description = "measure timings of data evaluation"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "chronologique" = callPackage @@ -58449,8 +58409,6 @@ self: { ]; description = "Church encoded pair"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "churros" = callPackage @@ -58469,8 +58427,6 @@ self: { ]; description = "Channel/Arrow based streaming computation library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "cicero-api" = callPackage @@ -58495,9 +58451,7 @@ self: { ]; description = "API bindings to IOHK's Cicero job scheduler"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; mainProgram = "cicero-cli"; - broken = true; }) {}; "cielo" = callPackage @@ -58635,6 +58589,8 @@ self: { ]; description = "AES and common modes using AES-NI when available"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "cipher-blowfish" = callPackage @@ -58712,6 +58668,8 @@ self: { ]; description = "DES and 3DES primitives"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "cipher-rc4" = callPackage @@ -58762,7 +58720,6 @@ self: { executableHaskellDepends = [ array base bytestring parseargs ]; description = "Implementation of CipherSaber2 RC4 cryptography"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "cs2"; }) {}; @@ -58777,6 +58734,32 @@ self: { license = lib.licenses.bsd3; }) {}; + "circle" = callPackage + ({ mkDerivation, aeson, autodocodec, base, bytestring + , case-insensitive, containers, country, hspec, hspec-expectations + , http-client, http-client-tls, http-types, pcre-heavy, random + , refined, safe, template-haskell, text, time, unordered-containers + , uuid, vector + }: + mkDerivation { + pname = "circle"; + version = "0.1.0.0"; + sha256 = "074v9xdrc6gr8galy61pzpnja7fhsldvinma0nq248j3sbywv66c"; + libraryHaskellDepends = [ + aeson autodocodec base bytestring case-insensitive containers + country http-client http-client-tls http-types pcre-heavy refined + template-haskell text time unordered-containers uuid vector + ]; + testHaskellDepends = [ + base hspec hspec-expectations http-client http-client-tls random + safe text time uuid + ]; + description = "Circle API client for Haskell"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "circle-packing" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -58936,35 +58919,6 @@ self: { }) {}; "citeproc" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring - , case-insensitive, containers, data-default, Diff, directory - , file-embed, filepath, mtl, pandoc-types, pretty, safe, scientific - , text, timeit, transformers, unicode-collation, uniplate, vector - , xml-conduit - }: - mkDerivation { - pname = "citeproc"; - version = "0.6.0.1"; - sha256 = "015ansq3a710s0hzs2157fx12bc4f1hy45l4dbi6j477sy800bqc"; - revision = "1"; - editedCabalFile = "1mzhq6s0jcncm71s825bvc289lq7i45rxmmi33x2j5i0v93zci4b"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson attoparsec base bytestring case-insensitive containers - data-default file-embed filepath pandoc-types safe scientific text - transformers unicode-collation uniplate vector xml-conduit - ]; - testHaskellDepends = [ - aeson base bytestring containers Diff directory filepath mtl pretty - text timeit transformers - ]; - description = "Generates citations and bibliography from CSL styles"; - license = lib.licenses.bsd2; - maintainers = [ lib.maintainers.sternenseemann ]; - }) {}; - - "citeproc_0_8_0_2" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring , case-insensitive, containers, data-default, Diff, directory , file-embed, filepath, mtl, pandoc-types, pretty, safe, scientific @@ -58988,7 +58942,6 @@ self: { ]; description = "Generates citations and bibliography from CSL styles"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.sternenseemann ]; }) {}; @@ -59371,6 +59324,7 @@ self: { executableHaskellDepends = [ base ]; description = "Clash: a functional hardware description language - GHC frontend"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; }) {}; "clash-lib" = callPackage @@ -59417,6 +59371,7 @@ self: { ]; description = "Clash: a functional hardware description language - As a library"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; mainProgram = "v16-upgrade-primitives"; }) {}; @@ -59438,6 +59393,7 @@ self: { ]; description = "Hedgehog Generators for clash-lib"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; }) {}; "clash-multisignal" = callPackage @@ -59453,7 +59409,6 @@ self: { ]; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "clash-prelude" = callPackage @@ -59492,6 +59447,8 @@ self: { ]; description = "Clash: a functional hardware description language - Prelude library"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clash-prelude-hedgehog" = callPackage @@ -59508,6 +59465,7 @@ self: { ]; description = "Hedgehog Generators for clash-prelude"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; }) {}; "clash-prelude-quickcheck" = callPackage @@ -59521,7 +59479,6 @@ self: { description = "QuickCheck instances for various types in the CλaSH Prelude"; license = "unknown"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "clash-shake" = callPackage @@ -59531,14 +59488,15 @@ self: { }: mkDerivation { pname = "clash-shake"; - version = "0.3.1.2"; - sha256 = "1nj9vhzfybm43jcns8nr3ka4gjc1xyn0ccv6xiqdyjipzldx4a1n"; + version = "0.3.2"; + sha256 = "0bgnl1q1xm1yhwspqlfr02p37iy8vka727r4awr2lihg12x83bjx"; libraryHaskellDepends = [ aeson base bytestring clash-ghc clash-lib clash-prelude directory shake split stache text unordered-containers ]; description = "Shake rules for building Clash programs"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "clash-systemverilog" = callPackage @@ -59557,7 +59515,6 @@ self: { description = "CAES Language for Synchronous Hardware - SystemVerilog backend"; license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "clash-verilog" = callPackage @@ -59576,7 +59533,6 @@ self: { description = "CAES Language for Synchronous Hardware - Verilog backend"; license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "clash-vhdl" = callPackage @@ -59595,7 +59551,6 @@ self: { description = "CAES Language for Synchronous Hardware - VHDL backend"; license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "clashilator" = callPackage @@ -59621,7 +59576,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "clashilator"; - broken = true; }) {}; "classify" = callPackage @@ -59804,20 +59758,6 @@ self: { broken = true; }) {}; - "clay_0_13_3" = callPackage - ({ mkDerivation, base, hspec, hspec-discover, mtl, text }: - mkDerivation { - pname = "clay"; - version = "0.13.3"; - sha256 = "192lsbyj6azjs2ygpx4i47fyr8zfmvwcas8mia07ndqglk2c9csx"; - libraryHaskellDepends = [ base mtl text ]; - testHaskellDepends = [ base hspec hspec-discover mtl text ]; - testToolDepends = [ hspec-discover ]; - description = "CSS preprocessor as embedded Haskell"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - }) {}; - "clay" = callPackage ({ mkDerivation, base, hspec, hspec-discover, mtl, text }: mkDerivation { @@ -59829,6 +59769,8 @@ self: { testToolDepends = [ hspec-discover ]; description = "CSS preprocessor as embedded Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clckwrks" = callPackage @@ -59863,7 +59805,6 @@ self: { libraryToolDepends = [ hsx2hs ]; description = "A secure, reliable content management system (CMS) and blogging platform"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) openssl;}; "clckwrks-cli" = callPackage @@ -59886,7 +59827,6 @@ self: { ]; description = "a command-line interface for adminstrating some aspects of clckwrks"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "clckwrks-cli"; }) {}; @@ -59937,6 +59877,7 @@ self: { description = "bug tracking plugin for clckwrks"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clckwrks-plugin-ircbot" = callPackage @@ -59986,6 +59927,7 @@ self: { description = "mailing list plugin for clckwrks"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clckwrks-plugin-media" = callPackage @@ -60008,7 +59950,6 @@ self: { ]; description = "media plugin for clckwrks"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "clckwrks-plugin-page" = callPackage @@ -60034,7 +59975,6 @@ self: { libraryToolDepends = [ hsx2hs ]; description = "support for CMS/Blogging in clckwrks"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "clckwrks-plugin-redirect" = callPackage @@ -60059,7 +59999,6 @@ self: { ]; description = "support redirects for CMS/Blogging in clckwrks"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "clckwrks-theme-bootstrap" = callPackage @@ -60077,7 +60016,6 @@ self: { ]; description = "simple bootstrap based template for clckwrks"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "clckwrks-theme-clckwrks" = callPackage @@ -60096,6 +60034,7 @@ self: { description = "simple bootstrap based template for clckwrks"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clckwrks-theme-geo-bootstrap" = callPackage @@ -60109,6 +60048,7 @@ self: { description = "geo bootstrap based template for clckwrks"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "cld2" = callPackage @@ -60218,34 +60158,33 @@ self: { }) {}; "cleveland" = callPackage - ({ mkDerivation, aeson, base-noprelude, bytestring, constraints - , containers, criterion, cryptonite, data-default, directory + ({ mkDerivation, aeson, base-noprelude, constraints, containers + , criterion, cryptonite, data-default, dependent-map, directory , either, exceptions, file-embed, filepath, fmt, hedgehog, hex-text , hspec-expectations, HUnit, lens, lorentz, MonadRandom, morley - , morley-client, morley-prelude, mtl, named, o-clock - , optparse-applicative, safe-exceptions, servant-client - , servant-client-core, singletons, singletons-base, statistics - , tagged, tasty, tasty-ant-xml, tasty-discover, tasty-hedgehog - , tasty-hunit-compat, template-haskell, temporary, text, time - , with-utf8 + , morley-client, morley-prelude, mtl, o-clock, optparse-applicative + , servant-client, servant-client-core, singletons, singletons-base + , some, statistics, tagged, tasty, tasty-ant-xml, tasty-discover + , tasty-hedgehog, tasty-hunit-compat, template-haskell, temporary + , text, time, with-utf8 }: mkDerivation { pname = "cleveland"; - version = "0.2.1"; - sha256 = "1qqk1mld2wfckpgvsj48w8rh9pdkbqq1p36wkvrphf35hl0hr882"; + version = "0.3.0"; + sha256 = "1ahdijygria9rlmfr61vl8s924b29yq31594z1y0dc79asw6vhi1"; libraryHaskellDepends = [ - aeson base-noprelude bytestring constraints containers criterion - cryptonite data-default directory either exceptions file-embed fmt - hedgehog hex-text HUnit lens lorentz MonadRandom morley - morley-client morley-prelude mtl named o-clock optparse-applicative - safe-exceptions servant-client-core singletons singletons-base - statistics tagged tasty tasty-ant-xml tasty-hedgehog - tasty-hunit-compat template-haskell temporary text time with-utf8 + aeson base-noprelude constraints containers criterion cryptonite + data-default dependent-map directory either exceptions file-embed + fmt hedgehog hex-text HUnit lens lorentz MonadRandom morley + morley-client morley-prelude mtl o-clock optparse-applicative + servant-client-core singletons singletons-base some statistics + tagged tasty tasty-ant-xml tasty-hedgehog tasty-hunit-compat + template-haskell temporary text time with-utf8 ]; testHaskellDepends = [ base-noprelude either filepath fmt hedgehog hspec-expectations lens - lorentz morley morley-client morley-prelude named o-clock - servant-client tasty tasty-hedgehog tasty-hunit-compat text time + lorentz morley morley-client morley-prelude o-clock servant-client + tasty tasty-hedgehog tasty-hunit-compat text time ]; testToolDepends = [ tasty-discover ]; description = "Testing framework for Morley"; @@ -60461,7 +60400,6 @@ self: { description = "A Haskell library as database client for Clickhouse"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "clientsession" = callPackage @@ -60571,8 +60509,8 @@ self: { }: mkDerivation { pname = "climb"; - version = "0.3.3"; - sha256 = "0d6jscwbjlm21jcdl29c3ix6vd5ly9mjr0ljchzkr6yk7gqk4z24"; + version = "0.4.1"; + sha256 = "1h3a3ghynd1k08jd8fb02rsbf9a1y8j9gz822mrc23p11zh4qcp3"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -60588,30 +60526,6 @@ self: { mainProgram = "climb-demo"; }) {}; - "climb_0_4_0" = callPackage - ({ mkDerivation, base, bytestring, containers, exceptions - , linenoise, mtl, text, unliftio-core - }: - mkDerivation { - pname = "climb"; - version = "0.4.0"; - sha256 = "0b27hlr70vcm2mklbnrsxk306d684cgbig8qgczgfx7r432wghg1"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base bytestring containers exceptions linenoise mtl text - unliftio-core - ]; - executableHaskellDepends = [ - base bytestring containers exceptions linenoise mtl text - unliftio-core - ]; - description = "Building blocks for a GHCi-like REPL with colon-commands"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - mainProgram = "climb-demo"; - }) {}; - "clingo" = callPackage ({ mkDerivation, base, bifunctors, clingo, deepseq, exceptions , hashable, mtl, StateVar, text, transformers, wl-pprint-text @@ -60796,6 +60710,7 @@ self: { description = "timer functionality to clock IO commands"; license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {QtCore = null;}; "clogparse" = callPackage @@ -61019,6 +60934,7 @@ self: { testHaskellDepends = [ base ]; description = "Glue between clr-host and clr-typed"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "clr-host" = callPackage @@ -61093,6 +61009,8 @@ self: { testHaskellDepends = [ base clr-marshal hspec text ]; description = "A strongly typed Haskell interface to the CLR type system"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clr-win-linker" = callPackage @@ -61192,6 +61110,7 @@ self: { description = "High performance clustering algorithms"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "clustertools" = callPackage @@ -61799,9 +61718,7 @@ self: { ]; description = "A Polysemy logging effect for high quality (unstructured) logs"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "example"; - broken = true; }) {}; "co-log-sys" = callPackage @@ -62025,7 +61942,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "codec-libevent-generate"; - broken = true; }) {}; "codec-mbox" = callPackage @@ -62179,8 +62095,6 @@ self: { ]; description = "Graphics library for CodeWorld"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "codex" = callPackage @@ -62277,6 +62191,8 @@ self: { benchmarkHaskellDepends = [ base gauge ]; description = "Utility functions for Coercible types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "coercion-extras" = callPackage @@ -62447,8 +62363,8 @@ self: { }: mkDerivation { pname = "coinbase-pro"; - version = "0.9.3.0"; - sha256 = "0974snfkil4xmrkw38d81d85n5w78ld3jd0kbsn3s22jd36dzjlm"; + version = "0.9.3.2"; + sha256 = "06gzynckmdsdzzvlmf3kmkbc883pqjbgd4hxkrm47xykv2m64x6s"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -62519,8 +62435,6 @@ self: { ]; description = "Generate CSV & XLSX files for importing into CoinTracking"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "colada" = callPackage @@ -62564,6 +62478,7 @@ self: { description = "Rudimentary JSON-RPC 2.0 client over raw TCP."; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "cold-widow" = callPackage @@ -62671,6 +62586,8 @@ self: { ]; description = "An Applicative Functor for extracting parts of a stream of values"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "collect-errors" = callPackage @@ -62773,8 +62690,8 @@ self: { pname = "colonnade"; version = "1.2.0.2"; sha256 = "1asjx71gp26a15v7g3p8bfddb5nnzky6672c35xx35hq73mhykr4"; - revision = "3"; - editedCabalFile = "078j65fw9cf8sscnvd0c3dkg24pcw4krav1x0zsg493ynxslv95z"; + revision = "4"; + editedCabalFile = "0425ag47i8llirh6jdy11mqilr6bdq0nzcx4yfha2n57qpx1gkjs"; libraryHaskellDepends = [ base bytestring contravariant profunctors semigroups text vector ]; @@ -62906,8 +62823,6 @@ self: { libraryHaskellDepends = [ base lens linear profunctors ]; description = "A type for colors"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "colour" = callPackage @@ -63294,6 +63209,7 @@ self: { ]; description = "Arrays where the index type is a function of the shape type"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "comfort-array-shape" = callPackage @@ -63315,6 +63231,7 @@ self: { doHaddock = false; description = "Additional shape types for the comfort-array package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "comfort-fftw" = callPackage @@ -63335,6 +63252,7 @@ self: { ]; description = "High-level interface to FFTW (Fast Fourier Transform) based on comfort-array"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "comfort-graph" = callPackage @@ -63373,6 +63291,7 @@ self: { description = "A format for describing comics"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "comma" = callPackage @@ -63451,7 +63370,9 @@ self: { testHaskellDepends = [ base commandert text unordered-containers ]; description = "A command line argument/option parser library"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "task-manager"; + broken = true; }) {}; "commandert" = callPackage @@ -63488,6 +63409,7 @@ self: { description = "Library for working with commoditized amounts and price histories"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "commonmark" = callPackage @@ -63533,6 +63455,28 @@ self: { mainProgram = "commonmark"; }) {}; + "commonmark-extensions_0_2_3_2" = callPackage + ({ mkDerivation, base, commonmark, containers, emojis, filepath + , network-uri, parsec, tasty, tasty-bench, tasty-hunit, text + , transformers + }: + mkDerivation { + pname = "commonmark-extensions"; + version = "0.2.3.2"; + sha256 = "1k5rlh2grg6g1waszhp565m360n1iynjvbkjz8xmap8y234g1bjj"; + libraryHaskellDepends = [ + base commonmark containers emojis filepath network-uri parsec text + transformers + ]; + testHaskellDepends = [ + base commonmark parsec tasty tasty-hunit text + ]; + benchmarkHaskellDepends = [ base commonmark tasty-bench text ]; + description = "Pure Haskell commonmark parser"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "commonmark-extensions" = callPackage ({ mkDerivation, base, commonmark, containers, emojis, filepath , network-uri, parsec, tasty, tasty-bench, tasty-hunit, text @@ -63618,7 +63562,6 @@ self: { description = "Provide communications security using symmetric ephemeral keys"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "commsec-keyexchange" = callPackage @@ -63790,6 +63733,8 @@ self: { testHaskellDepends = [ base directory ]; description = "Non-GC'd, contiguous storage for immutable data structures"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "compact-list" = callPackage @@ -63853,7 +63798,6 @@ self: { description = "Mutable vector with different GC characteristics"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "compact-sequences" = callPackage @@ -63887,7 +63831,6 @@ self: { description = "Socket functions for compact normal form"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "compact-string" = callPackage @@ -64126,8 +64069,6 @@ self: { ]; description = "Parse a Pandoc to a composite value"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "compdoc-dhall-decoder" = callPackage @@ -64146,7 +64087,6 @@ self: { ]; description = "Allows you to write FromDhall instances for Compdoc"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "compendium-client" = callPackage @@ -64372,8 +64312,8 @@ self: { }: mkDerivation { pname = "composite-aeson"; - version = "0.8.1.0"; - sha256 = "1xpb2m929si22igssijbmacmc2s36h7mq59k0hqwb7i9bnwzzpg5"; + version = "0.8.2.1"; + sha256 = "0glzqkd0vxrbajx76gfwqvrdg2q6648x64x5fm876899dr9cbss7"; libraryHaskellDepends = [ aeson aeson-better-errors base composite-base containers contravariant generic-deriving hashable lens mmorph mtl profunctors @@ -64409,8 +64349,8 @@ self: { ({ mkDerivation, base, composite-aeson, path }: mkDerivation { pname = "composite-aeson-path"; - version = "0.8.1.0"; - sha256 = "11f9xr2zfqj2bskr7yypxrd5qa64lzsbgdr6h3yy7ysr6cwpaqw7"; + version = "0.8.2.1"; + sha256 = "096k8wg3r4rfn4yyqpn8higglllk4mq3iwy57x33mnqgxqbdc1lm"; libraryHaskellDepends = [ base composite-aeson path ]; description = "Formatting data for the path library"; license = lib.licenses.bsd3; @@ -64424,13 +64364,15 @@ self: { }: mkDerivation { pname = "composite-aeson-refined"; - version = "0.8.1.0"; - sha256 = "1w6dp10xxd391dhj1ghqnld27b36c86zjrry0r0xz1yn6bbxw97s"; + version = "0.8.2.1"; + sha256 = "1k1hvhczrpx13z0zryih56dhnajmsrspaslrrbir7kbr9c3mc1jq"; libraryHaskellDepends = [ aeson-better-errors base composite-aeson mtl refined ]; description = "composite-aeson support for Refined from the refined package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "composite-aeson-throw" = callPackage @@ -64469,8 +64411,8 @@ self: { }: mkDerivation { pname = "composite-base"; - version = "0.8.1.0"; - sha256 = "18sq4alpkwidgh6pd9yxnxrq8p11pfwxg84fsjzzxlxqcl50bpm8"; + version = "0.8.2.0"; + sha256 = "0niw6rc9sscq73vja8pzds4r87yvckh0h5138i86wv18m34ksniw"; libraryHaskellDepends = [ base deepseq exceptions lens monad-control mtl profunctors template-haskell text transformers transformers-base unliftio-core @@ -64485,17 +64427,53 @@ self: { license = lib.licenses.bsd3; }) {}; + "composite-base_0_8_2_1" = callPackage + ({ mkDerivation, base, deepseq, exceptions, hspec, lens + , monad-control, mtl, profunctors, QuickCheck, template-haskell + , text, transformers, transformers-base, unliftio-core, vinyl + }: + mkDerivation { + pname = "composite-base"; + version = "0.8.2.1"; + sha256 = "0i2mamh5gz7ay1cm5nkmdbh2lnaph42pfi2aa9jb2baxi0jgxdri"; + libraryHaskellDepends = [ + base deepseq exceptions lens monad-control mtl profunctors + template-haskell text transformers transformers-base unliftio-core + vinyl + ]; + testHaskellDepends = [ + base deepseq exceptions hspec lens monad-control mtl profunctors + QuickCheck template-haskell text transformers transformers-base + unliftio-core vinyl + ]; + description = "Shared utilities for composite-* packages"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "composite-binary" = callPackage ({ mkDerivation, base, binary, composite-base }: mkDerivation { pname = "composite-binary"; - version = "0.8.1.0"; - sha256 = "1vhcv7jmh4ckf9837dpkzpjrh65alndgngxj15igxrwbsycl2wp9"; + version = "0.8.2.0"; + sha256 = "1ijlrwyji9179hc5wcmdzzf3g79xkz6k1kjxq0l7iqyvfjh2zrkh"; libraryHaskellDepends = [ base binary composite-base ]; description = "Orphan binary instances"; license = lib.licenses.bsd3; }) {}; + "composite-binary_0_8_2_1" = callPackage + ({ mkDerivation, base, binary, composite-base }: + mkDerivation { + pname = "composite-binary"; + version = "0.8.2.1"; + sha256 = "0bxnzxvw5mjhz3kh6x265l70hp1z3z1y9fbdwhrgv6bhhinxb3hq"; + libraryHaskellDepends = [ base binary composite-base ]; + description = "Orphan binary instances"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "composite-cassava" = callPackage ({ mkDerivation, base, bytestring, cassava, composite-base, tasty , tasty-hunit, text, unordered-containers, vector @@ -64531,8 +64509,6 @@ self: { ]; description = "Dhall instances for composite records"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "composite-ekg" = callPackage @@ -64540,8 +64516,8 @@ self: { }: mkDerivation { pname = "composite-ekg"; - version = "0.8.1.0"; - sha256 = "17i8mi9i8x3d9idfy60picz5qjqhl2wszjdbm8cj5szjw94lmka5"; + version = "0.8.2.0"; + sha256 = "0kcyscjs8qsydhj7labm8v62xcm9vc39rcw13xlvwmxz3lwi5jl3"; libraryHaskellDepends = [ base composite-base ekg-core lens text vinyl ]; @@ -64549,12 +64525,27 @@ self: { license = lib.licenses.bsd3; }) {}; + "composite-ekg_0_8_2_1" = callPackage + ({ mkDerivation, base, composite-base, ekg-core, lens, text, vinyl + }: + mkDerivation { + pname = "composite-ekg"; + version = "0.8.2.1"; + sha256 = "0c0rxa30r19wcvqrw20xk96652mxknbs1lqpnzdj9kz77al3k1kl"; + libraryHaskellDepends = [ + base composite-base ekg-core lens text vinyl + ]; + description = "EKG Metrics for Vinyl records"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "composite-hashable" = callPackage ({ mkDerivation, base, composite-base, hashable }: mkDerivation { pname = "composite-hashable"; - version = "0.8.1.0"; - sha256 = "0gz5bqyhwm863d6hxd67s6xbvk8shh2x7ggz1iyf48s16mr9i1w7"; + version = "0.8.2.1"; + sha256 = "1ynsmb9rw93n4dyrrfipb9glg5argh0xsbrb59jhgqi8ajfr7gwv"; libraryHaskellDepends = [ base composite-base hashable ]; description = "Orphan hashable instances"; license = lib.licenses.bsd3; @@ -64587,8 +64578,6 @@ self: { libraryHaskellDepends = [ base composite-base lens vinyl ]; description = "Extra lens functions for composite"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "composite-opaleye" = callPackage @@ -64598,8 +64587,8 @@ self: { }: mkDerivation { pname = "composite-opaleye"; - version = "0.8.1.0"; - sha256 = "1i0algplj79vafqai57hywcar4j1gi3w9lnq4hv8dv37z0isc6f4"; + version = "0.8.2.1"; + sha256 = "0w62s1cd6izkvc9ycb6rz6cbc7pa8mic9rbbmwjbn9xxfcbk2xph"; libraryHaskellDepends = [ base bytestring composite-base lens opaleye postgresql-simple product-profunctors profunctors split template-haskell text vinyl @@ -64620,8 +64609,8 @@ self: { }: mkDerivation { pname = "composite-swagger"; - version = "0.8.1.0"; - sha256 = "1229c3wpkmnwmkzgcxs7pc01dmszvipvlq7dc1h1lvgi2jj24pg8"; + version = "0.8.2.1"; + sha256 = "0sbjb60ghd86q3hxgmq4anc81ww4v4ny1ans0r9a5chp3bqvbi6a"; libraryHaskellDepends = [ base composite-base insert-ordered-containers lens swagger2 template-haskell text vinyl @@ -65185,8 +65174,6 @@ self: { ]; description = "A client side web UI framework for Haskell. Core framework."; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "concurrency" = callPackage @@ -65225,7 +65212,9 @@ self: { ]; description = "Benchmarks to compare concurrency APIs"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "makecharts"; + broken = true; }) {}; "concurrent-barrier" = callPackage @@ -65461,6 +65450,8 @@ self: { testHaskellDepends = [ base containers ]; description = "A fast concurrent unique identifier supply with a pure API"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "concurrent-utilities" = callPackage @@ -65513,7 +65504,9 @@ self: { testHaskellDepends = [ base cmdargs hourglass hspec QuickCheck ]; description = "Parser and interpreter of OpenStreetMap conditional restriction values"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "conditional-restriction-parser-exe"; + broken = true; }) {}; "condor" = callPackage @@ -65823,6 +65816,8 @@ self: { ]; description = "Conduit source and sink for Network.Connection."; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "conduit-extra" = callPackage @@ -66177,8 +66172,8 @@ self: { pname = "conferer"; version = "1.1.0.0"; sha256 = "1hkdrqxrac1mbzvd29f6ds4cbihdv0j0daai7yc282myv0varh09"; - revision = "2"; - editedCabalFile = "0j7q975kg4dchl7pn8cl26sf8945bmhw5mvy73s18ylxqx4qqkwb"; + revision = "3"; + editedCabalFile = "15gs9cv1i9j4qx6vnp32yhcjb5rjaf9g3jsfdzmi5v7i3b1gziwc"; libraryHaskellDepends = [ base bytestring containers directory filepath text ]; @@ -66198,8 +66193,8 @@ self: { pname = "conferer-aeson"; version = "1.1.0.2"; sha256 = "07rdal3smq1s14zmsn7g26vc6sqj21rsa2a1vcbrwrfgh9x36jkn"; - revision = "1"; - editedCabalFile = "19v6xla4vvhmhqh3z82inp1b6jzvprbvcmd9nbg1l65nsvqgq25a"; + revision = "2"; + editedCabalFile = "000fs57llk3f1x0rgdkxzbqzwzh5fx3mirpx0scmnj936byapp4c"; libraryHaskellDepends = [ aeson base bytestring conferer directory text unordered-containers vector @@ -66232,6 +66227,8 @@ self: { ]; description = "Configuration for reading dhall files"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "conferer-hedis" = callPackage @@ -66410,14 +66407,16 @@ self: { }: mkDerivation { pname = "conferer-warp"; - version = "1.1.0.0"; - sha256 = "0zbgxq229jr7xwzw6q20rwnslbci07b1vk324izm8hxcp3kb76mj"; + version = "1.1.0.1"; + sha256 = "1dbqm1vb00d1dnm3fixw4p7xv1bwpmv0xfkdig0xlgc5b70xbjsh"; libraryHaskellDepends = [ base conferer http-types text wai warp ]; testHaskellDepends = [ base conferer hspec http-types text wai warp ]; description = "conferer's FromConfig instances for warp settings"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "conferer-yaml" = callPackage @@ -66815,6 +66814,7 @@ self: { ]; description = "Vinyl-style extensible graphs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "conjugateGradient" = callPackage @@ -67079,6 +67079,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Generalization of standard Functor, Foldable, and Traversable classes"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "constrained-categories" = callPackage @@ -67181,6 +67183,7 @@ self: { ]; description = "Instances of standard platform types for 'constrained' package"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; }) {}; "constraint" = callPackage @@ -67279,6 +67282,8 @@ self: { ]; description = "Manipulating constraints and deriving class instances programmatically"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "constraints-emerge" = callPackage @@ -67316,6 +67321,22 @@ self: { mainProgram = "readme"; }) {}; + "constraints-extras_0_4_0_0" = callPackage + ({ mkDerivation, aeson, base, constraints, template-haskell }: + mkDerivation { + pname = "constraints-extras"; + version = "0.4.0.0"; + sha256 = "1irf4kd7a5h1glczbc73c3590m58azn4s68nfrjfg1h96i7mjfgn"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base constraints template-haskell ]; + executableHaskellDepends = [ aeson base constraints ]; + description = "Utility package for constraints"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "readme"; + }) {}; + "constrictor" = callPackage ({ mkDerivation, base, ghc-prim, transformers }: mkDerivation { @@ -67554,6 +67575,8 @@ self: { libraryHaskellDepends = [ base base-unicode-symbols containers ]; description = "Unicode alternatives for common functions and operators"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "containers-verified" = callPackage @@ -67730,8 +67753,8 @@ self: { }: mkDerivation { pname = "contiguous"; - version = "0.6.2.0"; - sha256 = "0ykd3nrc2ywf3svrkqsvvhycjf6hf5jm5dhhd3zpl57877r5cz72"; + version = "0.6.3.0"; + sha256 = "1vqzv5xr6dkvw0789rz3z39b7ldm9xrk2sv8c9k2fk14yxl7qibx"; libraryHaskellDepends = [ base deepseq primitive primitive-unlifted run-st ]; @@ -67889,6 +67912,8 @@ self: { ]; description = "Validation types/typeclass based on the contravariance"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "contravariant" = callPackage @@ -68046,7 +68071,6 @@ self: { ]; description = "Monads-fd instances for the EMT exceptions monad transformer"; license = lib.licenses.publicDomain; - hydraPlatforms = lib.platforms.none; }) {}; "control-monad-exception-monadstf" = callPackage @@ -68166,8 +68190,6 @@ self: { libraryHaskellDepends = [ base transformers ]; description = "Fast, easy to use CPS-based monad transformers"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "contstuff-monads-tf" = callPackage @@ -68180,6 +68202,7 @@ self: { description = "ContStuff instances for monads-tf transformers (deprecated)"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "contstuff-transformers" = callPackage @@ -68192,6 +68215,7 @@ self: { description = "Deprecated interface between contstuff 0.7.0 and the transformers package"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "converge" = callPackage @@ -68318,6 +68342,7 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "convert-annotation"; + broken = true; }) {}; "convertible" = callPackage @@ -68598,7 +68623,6 @@ self: { description = "A compiler for CoPilot targeting SBV"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "copilot-theorem" = callPackage @@ -68717,7 +68741,9 @@ self: { executableToolDepends = [ alex happy ]; description = "compile your own mini functional language with Core"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "core-compiler-exe"; + broken = true; }) {}; "core-data" = callPackage @@ -68756,27 +68782,6 @@ self: { }) {}; "core-program" = callPackage - ({ mkDerivation, async, base, bytestring, chronologique, core-data - , core-text, directory, exceptions, filepath, fsnotify, hashable - , hourglass, mtl, prettyprinter, safe-exceptions, stm - , template-haskell, terminal-size, text, text-short, transformers - , typed-process, unix - }: - mkDerivation { - pname = "core-program"; - version = "0.4.6.4"; - sha256 = "0bkjb9lpcnkj1lkpw309q3chd9aw5s5gvdprr335121xpjbgl33m"; - libraryHaskellDepends = [ - async base bytestring chronologique core-data core-text directory - exceptions filepath fsnotify hashable hourglass mtl prettyprinter - safe-exceptions stm template-haskell terminal-size text text-short - transformers typed-process unix - ]; - description = "Opinionated Haskell Interoperability"; - license = lib.licenses.mit; - }) {}; - - "core-program_0_6_1_1" = callPackage ({ mkDerivation, base, bytestring, core-data, core-text, directory , exceptions, filepath, fsnotify, hashable, hourglass, mtl , prettyprinter, safe-exceptions, stm, template-haskell @@ -68795,7 +68800,6 @@ self: { ]; description = "Opinionated Haskell Interoperability"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "core-telemetry" = callPackage @@ -68815,8 +68819,6 @@ self: { ]; description = "Advanced telemetry"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "core-text" = callPackage @@ -68849,6 +68851,8 @@ self: { testHaskellDepends = [ base ]; description = "\"Provide warnings for unexpected Core generation\""; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "core-webserver-servant" = callPackage @@ -68866,7 +68870,6 @@ self: { ]; description = "Interoperability with Servant"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "core-webserver-warp" = callPackage @@ -68885,7 +68888,6 @@ self: { ]; description = "Interoperability with Wai/Warp"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "corebot-bliki" = callPackage @@ -69134,22 +69136,6 @@ self: { }) {}; "countable" = callPackage - ({ mkDerivation, base, bytestring, silently, tasty, tasty-golden - , tasty-hunit - }: - mkDerivation { - pname = "countable"; - version = "1.0"; - sha256 = "0v0fdapdnzdqbkjhgkicx1njs3ybshk83h79fbgln13sd5pyp87r"; - libraryHaskellDepends = [ base ]; - testHaskellDepends = [ - base bytestring silently tasty tasty-golden tasty-hunit - ]; - description = "Countable, Searchable, Finite, Empty classes"; - license = lib.licenses.bsd3; - }) {}; - - "countable_1_2" = callPackage ({ mkDerivation, base, bytestring, silently, tasty, tasty-golden , tasty-hunit }: @@ -69163,7 +69149,6 @@ self: { ]; description = "Countable, Searchable, Finite, Empty classes"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "countable-inflections" = callPackage @@ -69196,6 +69181,33 @@ self: { }) {}; "country" = callPackage + ({ mkDerivation, aeson, attoparsec, base, bytebuild, bytehash + , byteslice, bytestring, compact, contiguous, deepseq, entropy + , gauge, hashable, primitive, primitive-unlifted, QuickCheck + , quickcheck-classes, scientific, tasty, tasty-quickcheck, text + , text-short, unordered-containers + }: + mkDerivation { + pname = "country"; + version = "0.2.3"; + sha256 = "12d1nymfj13jgh5jhznrg8sgxvxyb2y3lvbl6p4mpa3qqhggyr3g"; + libraryHaskellDepends = [ + aeson attoparsec base bytebuild bytehash byteslice bytestring + contiguous deepseq entropy hashable primitive primitive-unlifted + scientific text text-short unordered-containers + ]; + testHaskellDepends = [ + base byteslice primitive QuickCheck quickcheck-classes tasty + tasty-quickcheck text text-short + ]; + benchmarkHaskellDepends = [ + base bytehash byteslice bytestring compact gauge primitive text + ]; + description = "Country data type and functions"; + license = lib.licenses.bsd3; + }) {}; + + "country_0_2_3_1" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytebuild, bytehash , byteslice, bytestring, compact, contiguous, deepseq, entropy , gauge, hashable, primitive, primitive-unlifted, QuickCheck @@ -69221,7 +69233,6 @@ self: { description = "Country data type and functions"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "country-codes" = callPackage @@ -69288,21 +69299,6 @@ self: { }) {}; "covariance" = callPackage - ({ mkDerivation, base, glasso, hmatrix, statistics, tasty - , tasty-hunit, vector - }: - mkDerivation { - pname = "covariance"; - version = "0.1.0.6"; - sha256 = "0aqml07q4rxihv3mrflprx2gm1c56np2m4n8kbipcdiflndn1017"; - libraryHaskellDepends = [ base glasso hmatrix statistics vector ]; - testHaskellDepends = [ base hmatrix tasty tasty-hunit ]; - description = "Well-conditioned estimation of large-dimensional covariance matrices"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "covariance_0_2_0_1" = callPackage ({ mkDerivation, base, glasso, hmatrix, statistics, tasty , tasty-hunit, vector }: @@ -69314,7 +69310,6 @@ self: { testHaskellDepends = [ base hmatrix tasty tasty-hunit ]; description = "Well-conditioned estimation of large-dimensional covariance matrices"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; @@ -69535,8 +69530,8 @@ self: { ({ mkDerivation, base, containers, directory, parallel }: mkDerivation { pname = "cpsa"; - version = "3.6.11"; - sha256 = "1kqsr0vb9sxg2c5y14k66d381gx6779bns6ybjymgabw98asmm3k"; + version = "4.4.1"; + sha256 = "14g31626g72qljbrds08cpx670v2zgis05z3nkd5b7lim99ibhfh"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -69911,6 +69906,7 @@ self: { ]; description = "Crack various integer and floating-point data formats"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "crackNum"; }) {}; @@ -70104,6 +70100,8 @@ self: { description = "Haskell bindings for crc32c"; license = lib.licenses.bsd3; platforms = lib.platforms.x86; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "crdt" = callPackage @@ -70471,7 +70469,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "criterion-compare"; - broken = true; }) {}; "criterion-measurement" = callPackage @@ -71165,6 +71162,7 @@ self: { testToolDepends = [ tasty-discover ]; description = "Easy-and-safe-to-use high-level cryptography based on Sodium"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; }) {}; "crypto-token" = callPackage @@ -71484,30 +71482,6 @@ self: { }) {}; "cryptonite" = callPackage - ({ mkDerivation, base, basement, bytestring, deepseq, gauge - , ghc-prim, integer-gmp, memory, random, tasty, tasty-hunit - , tasty-kat, tasty-quickcheck - }: - mkDerivation { - pname = "cryptonite"; - version = "0.29"; - sha256 = "13xhp3hshb8x06bw37kp16c9jpjmgfn06nkj9drz745fv8f04fnq"; - revision = "1"; - editedCabalFile = "1gaabsh8ihxcb6f3pplvpkplw7xbdxvflmc1wwnssx7s070n4323"; - libraryHaskellDepends = [ - base basement bytestring deepseq ghc-prim integer-gmp memory - ]; - testHaskellDepends = [ - base bytestring memory tasty tasty-hunit tasty-kat tasty-quickcheck - ]; - benchmarkHaskellDepends = [ - base bytestring deepseq gauge memory random - ]; - description = "Cryptography Primitives sink"; - license = lib.licenses.bsd3; - }) {}; - - "cryptonite_0_30" = callPackage ({ mkDerivation, base, basement, bytestring, deepseq, gauge , ghc-prim, integer-gmp, memory, random, tasty, tasty-hunit , tasty-kat, tasty-quickcheck @@ -71527,7 +71501,6 @@ self: { ]; description = "Cryptography Primitives sink"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "cryptonite-cd" = callPackage @@ -71732,6 +71705,7 @@ self: { ]; description = "a gallery of Csound instruments"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "csound-controllers" = callPackage @@ -71743,6 +71717,7 @@ self: { libraryHaskellDepends = [ base csound-expression ]; testHaskellDepends = [ base csound-expression ]; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "csound-expression" = callPackage @@ -71762,6 +71737,7 @@ self: { ]; description = "library to make electronic music"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "csound-expression-dynamic" = callPackage @@ -71779,6 +71755,8 @@ self: { ]; description = "dynamic core for csound-expression library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "csound-expression-opcodes" = callPackage @@ -71794,6 +71772,7 @@ self: { ]; description = "opcodes for the library csound-expression"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "csound-expression-typed" = callPackage @@ -71814,6 +71793,7 @@ self: { ]; description = "typed core for the library csound-expression"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "csound-sampler" = callPackage @@ -71825,6 +71805,7 @@ self: { libraryHaskellDepends = [ base csound-expression transformers ]; description = "A musical sampler based on Csound"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "csp" = callPackage @@ -72068,6 +72049,8 @@ self: { ]; description = "extracts data from a CSV file"; license = lib.licenses.gpl3Plus; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "csv-table" = callPackage @@ -72502,6 +72485,8 @@ self: { testHaskellDepends = [ base parsec text ]; description = "Curly braces (brackets) expanding"; license = lib.licenses.lgpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "currencies" = callPackage @@ -72700,8 +72685,6 @@ self: { ]; description = "Fast, Haskell RPC"; license = lib.licenses.publicDomain; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "curryrs" = callPackage @@ -72736,7 +72719,6 @@ self: { ]; description = "Terminal tool for viewing tabular data"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "cursedcsv"; }) {}; @@ -72971,7 +72953,9 @@ self: { ]; description = "Cut files according to a position list"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "cutter"; + broken = true; }) {}; "cv-combinators" = callPackage @@ -73247,6 +73231,7 @@ self: { description = "Binary parsing and serialization with integrated size"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "damnpacket" = callPackage @@ -73800,6 +73785,7 @@ self: { description = "Use Accessor to access state in monads-fd State monad class"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "data-accessor-monads-tf" = callPackage @@ -73899,6 +73885,8 @@ self: { ]; description = "Type-safe, bytestring-based ASCII values"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "data-aviary" = callPackage @@ -74179,6 +74167,7 @@ self: { ]; description = "A class for types with a default value"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "data-default-generics" = callPackage @@ -74270,6 +74259,8 @@ self: { libraryHaskellDepends = [ base data-default-class ]; description = "Default instances for types in newer versions of base package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "data-default-instances-old-locale" = callPackage @@ -74429,8 +74420,6 @@ self: { testHaskellDepends = [ base hspec ]; description = "Coerce between unlifted boxed and lifted types"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "data-elf" = callPackage @@ -74444,7 +74433,6 @@ self: { ]; description = "Executable and Linkable Format (ELF) data structures"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "data-embed" = callPackage @@ -74877,8 +74865,6 @@ self: { ]; description = "Used to be Haskell 98 Lenses"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "data-lens-fd" = callPackage @@ -74893,6 +74879,7 @@ self: { description = "Lenses"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "data-lens-ixset" = callPackage @@ -74906,6 +74893,7 @@ self: { description = "A Lens for IxSet"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "data-lens-light" = callPackage @@ -74930,6 +74918,7 @@ self: { description = "Utilities for Data.Lens"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "data-list-sequences" = callPackage @@ -75518,8 +75507,6 @@ self: { testHaskellDepends = [ base tasty tasty-quickcheck ]; description = "Shorter binary words"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "data-tensor" = callPackage @@ -75701,7 +75688,6 @@ self: { description = "HasId/Groundhog interop"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "database-migrate" = callPackage @@ -76345,33 +76331,6 @@ self: { }) {}; "dbus" = callPackage - ({ mkDerivation, base, bytestring, cereal, conduit, containers - , criterion, deepseq, directory, exceptions, extra, filepath, lens - , network, parsec, process, QuickCheck, random, resourcet, split - , tasty, tasty-hunit, tasty-quickcheck, template-haskell, text - , th-lift, transformers, unix, vector, xml-conduit, xml-types - }: - mkDerivation { - pname = "dbus"; - version = "1.2.22"; - sha256 = "03bpvdgjq4l7s5mihdhazd0aamcjvg9wxlgpsnm10r7jdk7lbbia"; - libraryHaskellDepends = [ - base bytestring cereal conduit containers deepseq exceptions - filepath lens network parsec random split template-haskell text - th-lift transformers unix vector xml-conduit xml-types - ]; - testHaskellDepends = [ - base bytestring cereal containers directory extra filepath network - parsec process QuickCheck random resourcet tasty tasty-hunit - tasty-quickcheck text transformers unix vector - ]; - benchmarkHaskellDepends = [ base criterion ]; - doCheck = false; - description = "A client library for the D-Bus IPC system"; - license = lib.licenses.asl20; - }) {}; - - "dbus_1_2_27" = callPackage ({ mkDerivation, base, bytestring, cereal, conduit, containers , criterion, deepseq, directory, exceptions, extra, filepath, lens , network, parsec, process, QuickCheck, random, resourcet, split @@ -76396,7 +76355,6 @@ self: { doCheck = false; description = "A client library for the D-Bus IPC system"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "dbus-client" = callPackage @@ -76642,7 +76600,6 @@ self: { description = "Disciplined Disciple Compiler core language and type checker"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ddc-core-babel" = callPackage @@ -76949,8 +76906,8 @@ self: { }: mkDerivation { pname = "dear-imgui"; - version = "2.1.1"; - sha256 = "0br6wx9jzbvk5wnzcnyrlvrq3rslx6akzsfbyb2yqw1m8nl1nkfq"; + version = "2.1.3"; + sha256 = "1czb3g51wh761r0s7d9v47fyx926r1prp3agi5cxpa34vwmghr9x"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -77104,7 +77061,9 @@ self: { ]; description = "secure remote debugging"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "debug-me"; + broken = true; }) {}; "debug-pp" = callPackage @@ -77258,8 +77217,6 @@ self: { testHaskellDepends = [ base tasty tasty-hunit ]; description = "Preprocessing decimal literals more or less as they are (instead of via fractions)"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "decision-diagrams" = callPackage @@ -77286,6 +77243,8 @@ self: { ]; description = "Binary Decision Diagrams (BDD) and Zero-suppressed Binary Decision Diagrams (ZDD)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "declarative" = callPackage @@ -77434,7 +77393,9 @@ self: { ]; description = "Call DeepL to translate you files"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "deepl"; + broken = true; }) {}; "deeplearning-hs" = callPackage @@ -77466,12 +77427,12 @@ self: { mainProgram = "deeplearning_demonstration"; }) {}; - "deepseq_1_4_8_0" = callPackage + "deepseq_1_4_8_1" = callPackage ({ mkDerivation, array, base, ghc-prim }: mkDerivation { pname = "deepseq"; - version = "1.4.8.0"; - sha256 = "0nk5hly70xb91q5pnq87yrwh0365kqj7iyhq5mbj8yhgwxr1661d"; + version = "1.4.8.1"; + sha256 = "0p8nmji6r9171mrmnnsm1x396pz6q0vks0afy475vny73i1rx1a7"; libraryHaskellDepends = [ array base ghc-prim ]; testHaskellDepends = [ array base ghc-prim ]; description = "Deep evaluation of data structures"; @@ -78059,8 +78020,6 @@ self: { ]; description = "Dependency injection for records-of-functions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "dep-t-advice" = callPackage @@ -78086,7 +78045,6 @@ self: { ]; description = "Giving good advice to functions in records-of-functions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "dep-t-dynamic" = callPackage @@ -78111,7 +78069,6 @@ self: { ]; description = "A dynamic environment for dependency injection"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "dep-t-value" = callPackage @@ -78134,6 +78091,7 @@ self: { description = "Pair resources files with types within your program"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dependency" = callPackage @@ -78233,6 +78191,8 @@ self: { pname = "dependent-map"; version = "0.4.0.0"; sha256 = "0b0zhyl3wkl4kkrxvq7vwjz3gn0ndxjjgyw9cky8a6xyv190pkjk"; + revision = "1"; + editedCabalFile = "160p9crvlx1sn60inkwxa6mv1h2d4fgqnpsb2km67zrkpdfyd2s2"; libraryHaskellDepends = [ base constraints-extras containers dependent-sum ]; @@ -78246,18 +78206,14 @@ self: { }: mkDerivation { pname = "dependent-monoidal-map"; - version = "0.1.1.2"; - sha256 = "11qcrxji3lvq4blzh1qk9wkhhzjkvz3maxfv63zgby98dpmkxa2x"; - revision = "1"; - editedCabalFile = "0149hmhqlj69pjg325p3da1z96czbjc18vp4i4acrvzbjh060nd4"; + version = "0.1.1.3"; + sha256 = "12kd8xr32zb21pvns3frabz5p8wlg6s3dcfgmam36hhv0d418r8l"; libraryHaskellDepends = [ aeson base constraints constraints-extras dependent-map dependent-sum dependent-sum-aeson-orphans ]; description = "Dependent map that uses semigroup mappend"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "dependent-state" = callPackage @@ -78297,14 +78253,26 @@ self: { license = lib.licenses.publicDomain; }) {}; + "dependent-sum_0_7_2_0" = callPackage + ({ mkDerivation, base, constraints-extras, some }: + mkDerivation { + pname = "dependent-sum"; + version = "0.7.2.0"; + sha256 = "1frw5965v8i6xqdgs95gg8asgdqcqnmfahz0pmbwiaw5ybn62rc2"; + libraryHaskellDepends = [ base constraints-extras some ]; + description = "Dependent sum type"; + license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; + }) {}; + "dependent-sum-aeson-orphans" = callPackage ({ mkDerivation, aeson, base, constraints, constraints-extras , dependent-map, dependent-sum, some }: mkDerivation { pname = "dependent-sum-aeson-orphans"; - version = "0.3.1.0"; - sha256 = "1psjd7va8k53vq9kh4pclsf27798mc1ggk1csjk39c8d97vm41qz"; + version = "0.3.1.1"; + sha256 = "0d2255gxsamp19hl23m076ds2j08ny95swrk9r3njjfjrwkd4zbq"; libraryHaskellDepends = [ aeson base constraints constraints-extras dependent-map dependent-sum some @@ -78532,8 +78500,8 @@ self: { ({ mkDerivation, base, data-default }: mkDerivation { pname = "derive-enumerable"; - version = "0.1.1.0"; - sha256 = "08zhyn9xcmhrrnh7y2a1r7v4nmgm2af0d41ns0wjqais67rzsxsp"; + version = "0.2.0"; + sha256 = "0hb1hnzh9xb522fj797ix5y85hmh0cy32gqsgpfvgq3zkp2r4k5m"; libraryHaskellDepends = [ base data-default ]; description = "Generic instances for enumerating complex data types"; license = lib.licenses.gpl3Only; @@ -78575,6 +78543,8 @@ self: { ]; description = "Derive class instances though various kinds of lifting"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "derive-monoid" = callPackage @@ -78695,10 +78665,8 @@ self: { }: mkDerivation { pname = "deriving-compat"; - version = "0.6.1"; - sha256 = "09lxms6220saycra4kpxihwa7zh253zmv1zpa41dbnhgffxs3zbb"; - revision = "1"; - editedCabalFile = "0m3ywfvj96yqrdyv6mgnmdhlsvjjn89wl0n1n7v2m60zaan14cgh"; + version = "0.6.2"; + sha256 = "18kpai3jrazcnxcfqqjxkv2ghrz8xyg73rn5x0ipim3z09grj6ki"; libraryHaskellDepends = [ base containers ghc-boot-th ghc-prim template-haskell th-abstraction transformers transformers-compat @@ -78712,6 +78680,22 @@ self: { license = lib.licenses.bsd3; }) {}; + "deriving-openapi3" = callPackage + ({ mkDerivation, aeson, base, deriving-aeson, lens, openapi3, text + }: + mkDerivation { + pname = "deriving-openapi3"; + version = "0.1.0.0"; + sha256 = "16jl42hpk21pwzlnpwny57l1xv9ibransw65zk4z4scdi4ygg9xi"; + libraryHaskellDepends = [ + aeson base deriving-aeson lens openapi3 text + ]; + description = "DerivingVia for OpenAPI 3"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "deriving-show-simple" = callPackage ({ mkDerivation, base, HUnit }: mkDerivation { @@ -78878,6 +78862,8 @@ self: { ]; description = "Self-describing consumers/parsers; forms, cmd-line args, JSON, etc"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "desert" = callPackage @@ -79101,6 +79087,8 @@ self: { ]; description = "Render and parse df1 logs as HTML"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dfinity-radix-tree" = callPackage @@ -79314,64 +79302,6 @@ self: { }) {}; "dhall" = callPackage - ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, atomic-write - , base, base16-bytestring, bytestring, case-insensitive, cborg - , cborg-json, containers, contravariant, cryptohash-sha256 - , data-fix, deepseq, Diff, directory, doctest, dotgen, either - , exceptions, filepath, foldl, gauge, generic-random, half - , hashable, haskeline, http-client, http-client-tls, http-types - , lens-family-core, megaparsec, mmorph, mockery, mtl, network-uri - , optparse-applicative, parser-combinators, parsers, pretty-simple - , prettyprinter, prettyprinter-ansi-terminal, profunctors - , QuickCheck, quickcheck-instances, repline, scientific, serialise - , special-values, spoon, system-filepath, tasty - , tasty-expected-failure, tasty-hunit, tasty-quickcheck - , tasty-silver, template-haskell, temporary, text, text-manipulate - , th-lift-instances, time, transformers, turtle - , unordered-containers, uri-encode, vector - }: - mkDerivation { - pname = "dhall"; - version = "1.40.2"; - sha256 = "14wh497fipvz01zc9s31gv144spg1iqfwp6x5mlk1hjk0v9qs5by"; - revision = "2"; - editedCabalFile = "0mxq3knz1wpvs6jcdw6p0mnwpyy7aqriy2qdyxqzmhcbw2yn3hc1"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson aeson-pretty ansi-terminal atomic-write base - base16-bytestring bytestring case-insensitive cborg cborg-json - containers contravariant cryptohash-sha256 data-fix deepseq Diff - directory dotgen either exceptions filepath half hashable haskeline - http-client http-client-tls http-types lens-family-core megaparsec - mmorph mtl network-uri optparse-applicative parser-combinators - parsers pretty-simple prettyprinter prettyprinter-ansi-terminal - profunctors repline scientific serialise template-haskell text - text-manipulate th-lift-instances time transformers - unordered-containers uri-encode vector - ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ - base bytestring cborg containers data-fix deepseq directory doctest - either filepath foldl generic-random http-client http-client-tls - lens-family-core megaparsec mockery prettyprinter QuickCheck - quickcheck-instances scientific serialise special-values spoon - system-filepath tasty tasty-expected-failure tasty-hunit - tasty-quickcheck tasty-silver template-haskell temporary text time - transformers turtle unordered-containers vector - ]; - benchmarkHaskellDepends = [ - base bytestring containers directory gauge text - ]; - doCheck = false; - description = "A configuration language guaranteed to terminate"; - license = lib.licenses.bsd3; - mainProgram = "dhall"; - maintainers = [ lib.maintainers.Gabriel439 ]; - }) {}; - - "dhall_1_41_2" = callPackage ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, atomic-write , base, base16-bytestring, bytestring, case-insensitive, cborg , cborg-json, containers, contravariant, cryptohash-sha256 @@ -79393,8 +79323,8 @@ self: { pname = "dhall"; version = "1.41.2"; sha256 = "14m5rrvkid76qnvg0l14xw1mnqclhip3gjrz20g1lp4fd5p056ka"; - revision = "3"; - editedCabalFile = "1j8hhg6jxzvg1lh5lad9wp54fi0znq5syfxa7rpr6sw0v6257fi1"; + revision = "4"; + editedCabalFile = "0innb3cn98ynb8bd83jdyrm64ij7wcvajg5qcwzdwbyzpr62anfx"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -79453,37 +79383,11 @@ self: { doCheck = false; description = "A configuration language guaranteed to terminate"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "dhall"; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; "dhall-bash" = callPackage - ({ mkDerivation, base, bytestring, containers, dhall - , neat-interpolation, optparse-generic, shell-escape, text - }: - mkDerivation { - pname = "dhall-bash"; - version = "1.0.39"; - sha256 = "0by0w5dqsi0yrs9qnkpls7n5m0qwslxkcycb4s97vk8xl6nj5kk8"; - revision = "1"; - editedCabalFile = "1c01623qx7wxas9g8b4hliybvff0g994jbwrcx14hhb77xr6j14v"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base bytestring containers dhall neat-interpolation shell-escape - text - ]; - executableHaskellDepends = [ - base bytestring dhall optparse-generic text - ]; - description = "Compile Dhall to Bash"; - license = lib.licenses.bsd3; - mainProgram = "dhall-to-bash"; - maintainers = [ lib.maintainers.Gabriel439 ]; - }) {}; - - "dhall-bash_1_0_40" = callPackage ({ mkDerivation, base, bytestring, containers, dhall , neat-interpolation, optparse-generic, shell-escape, text }: @@ -79504,7 +79408,6 @@ self: { ]; description = "Compile Dhall to Bash"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "dhall-to-bash"; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; @@ -79633,38 +79536,6 @@ self: { }) {}; "dhall-json" = callPackage - ({ mkDerivation, aeson, aeson-pretty, aeson-yaml, ansi-terminal - , base, bytestring, containers, dhall, exceptions, filepath - , lens-family-core, optparse-applicative, prettyprinter - , prettyprinter-ansi-terminal, scientific, tasty, tasty-hunit - , tasty-silver, text, unordered-containers, vector - }: - mkDerivation { - pname = "dhall-json"; - version = "1.7.9"; - sha256 = "11rl46vn6lzcm9kznpfc43c3a2cbq2si2zba3k2x4j360kvg9fgn"; - revision = "2"; - editedCabalFile = "0f1jb37f5k214dzxbbhw2hij7j7srydkdp0hpkapgs5k73vjvqm4"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson aeson-pretty aeson-yaml base bytestring containers dhall - exceptions filepath lens-family-core optparse-applicative - prettyprinter scientific text unordered-containers vector - ]; - executableHaskellDepends = [ - aeson aeson-pretty ansi-terminal base bytestring dhall exceptions - optparse-applicative prettyprinter prettyprinter-ansi-terminal text - ]; - testHaskellDepends = [ - aeson base bytestring dhall tasty tasty-hunit tasty-silver text - ]; - description = "Convert between Dhall and JSON or YAML"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; - }) {}; - - "dhall-json_1_7_11" = callPackage ({ mkDerivation, aeson, aeson-pretty, aeson-yaml, ansi-terminal , base, bytestring, containers, dhall, exceptions, filepath , lens-family-core, optparse-applicative, prettyprinter @@ -79693,7 +79564,6 @@ self: { ]; description = "Convert between Dhall and JSON or YAML"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; @@ -79750,31 +79620,6 @@ self: { }) {}; "dhall-nix" = callPackage - ({ mkDerivation, base, containers, data-fix, dhall, hnix - , lens-family-core, neat-interpolation, optparse-generic, text - }: - mkDerivation { - pname = "dhall-nix"; - version = "1.1.23"; - sha256 = "17ajfkhxg4kjn6w7v3ymr6nsbqplvywkcwmfzybxqvmphh4zmfjb"; - revision = "1"; - editedCabalFile = "1grr0r30nbhi1d52vhmhp0rx2pas0wbg7m5npsqczfgd1d9p43dz"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base containers data-fix dhall hnix lens-family-core - neat-interpolation text - ]; - executableHaskellDepends = [ - base dhall hnix optparse-generic text - ]; - description = "Dhall to Nix compiler"; - license = lib.licenses.bsd3; - mainProgram = "dhall-to-nix"; - maintainers = [ lib.maintainers.Gabriel439 ]; - }) {}; - - "dhall-nix_1_1_25" = callPackage ({ mkDerivation, base, containers, data-fix, dhall, hnix , lens-family-core, neat-interpolation, optparse-generic, text }: @@ -79795,7 +79640,6 @@ self: { ]; description = "Dhall to Nix compiler"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "dhall-to-nix"; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; @@ -79874,6 +79718,36 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "dhall-secret" = callPackage + ({ mkDerivation, amazonka, amazonka-kms, base, base64, bech32 + , bytestring, cryptonite, dhall, HUnit, lens, memory + , optparse-applicative, pem, text, unordered-containers + }: + mkDerivation { + pname = "dhall-secret"; + version = "0.5.52"; + sha256 = "1dxnn77kjab3vwf6p1pk000aila9m5jgalnba0g54prcj9rgca6q"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + amazonka amazonka-kms base base64 bech32 bytestring cryptonite + dhall lens memory pem text unordered-containers + ]; + executableHaskellDepends = [ + amazonka amazonka-kms base base64 bech32 bytestring cryptonite + dhall lens memory optparse-applicative pem text + unordered-containers + ]; + testHaskellDepends = [ + amazonka amazonka-kms base base64 bech32 bytestring cryptonite + dhall HUnit lens memory pem text unordered-containers + ]; + description = "Encrypt Decrypt Dhall expressions"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "dhall-secret"; + }) {}; + "dhall-text" = callPackage ({ mkDerivation, base, dhall, optparse-applicative, text }: mkDerivation { @@ -79973,37 +79847,6 @@ self: { }) {}; "dhall-yaml" = callPackage - ({ mkDerivation, aeson, ansi-terminal, base, bytestring, dhall - , dhall-json, exceptions, HsYAML, HsYAML-aeson - , optparse-applicative, prettyprinter, prettyprinter-ansi-terminal - , tasty, tasty-expected-failure, tasty-hunit, text, vector - }: - mkDerivation { - pname = "dhall-yaml"; - version = "1.2.10"; - sha256 = "1a3g84799lbq7v9bzdq9bcwzyzci07rd1x42325ck4x51hrqs8nn"; - revision = "1"; - editedCabalFile = "1jfzpwbcg17mqk9c2f1lhqjwadxm1k04rd91j4h4gd5wnsvb85i4"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base bytestring dhall dhall-json HsYAML HsYAML-aeson - optparse-applicative text vector - ]; - executableHaskellDepends = [ - aeson ansi-terminal base bytestring dhall dhall-json exceptions - optparse-applicative prettyprinter prettyprinter-ansi-terminal text - ]; - testHaskellDepends = [ - base bytestring dhall dhall-json tasty tasty-expected-failure - tasty-hunit text - ]; - description = "Convert between Dhall and YAML"; - license = lib.licenses.gpl3Only; - maintainers = [ lib.maintainers.Gabriel439 ]; - }) {}; - - "dhall-yaml_1_2_11" = callPackage ({ mkDerivation, aeson, ansi-terminal, base, bytestring, dhall , dhall-json, exceptions, HsYAML, HsYAML-aeson , optparse-applicative, prettyprinter, prettyprinter-ansi-terminal @@ -80031,7 +79874,6 @@ self: { ]; description = "Convert between Dhall and YAML"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; @@ -80379,10 +80221,10 @@ self: { }: mkDerivation { pname = "diagrams-contrib"; - version = "1.4.4"; - sha256 = "043jpr7lqg708lzmv6cqys7312lfdwnf8ijcnpl4jkbvcwl87c1m"; - revision = "7"; - editedCabalFile = "0jwj06c2bqawpr57y2x8hbnjlsl1nv9k7wjxhk56w240qyspmj3p"; + version = "1.4.5"; + sha256 = "0v18a8hyrmpxqi9r30292956afqd4smxnn5v01s66sx382fay2wh"; + revision = "1"; + editedCabalFile = "0i5s9mr88kc68v2wc07jpdy2hzqh2gc1dsawvb2sracnqmv9q658"; libraryHaskellDepends = [ base circle-packing colour containers cubicbezier data-default data-default-class diagrams-core diagrams-lib diagrams-solve @@ -80406,6 +80248,8 @@ self: { pname = "diagrams-core"; version = "1.5.0.1"; sha256 = "1gv1p5hrxi3hks0nb4l38gdgfq9bh9d86b6dxcyzqxrwxbxk1khn"; + revision = "1"; + editedCabalFile = "1gahbyv00xyr4pcmpq4g95jyh7844fp8z0g9l2ybifv4s73vdrym"; libraryHaskellDepends = [ adjunctions base containers distributive dual-tree lens linear monoid-extras mtl profunctors semigroups unordered-containers @@ -80414,6 +80258,27 @@ self: { license = lib.licenses.bsd3; }) {}; + "diagrams-gi-cairo" = callPackage + ({ mkDerivation, array, base, bytestring, colour, containers + , diagrams-core, diagrams-lib, filepath, gi-cairo + , gi-cairo-connector, gi-cairo-render, gi-pango, gi-pangocairo + , hashable, JuicyPixels, mtl, optparse-applicative, split + , statestack, text, unix, vector + }: + mkDerivation { + pname = "diagrams-gi-cairo"; + version = "1.4.2"; + sha256 = "0k6fw1vvqa4pra4czd90n7i7h1vf6hn08a4jip1xbqkf57d89bn6"; + libraryHaskellDepends = [ + array base bytestring colour containers diagrams-core diagrams-lib + filepath gi-cairo gi-cairo-connector gi-cairo-render gi-pango + gi-pangocairo hashable JuicyPixels mtl optparse-applicative split + statestack text unix vector + ]; + description = "Cairo backend for diagrams drawing EDSL"; + license = lib.licenses.bsd3; + }) {}; + "diagrams-graphviz" = callPackage ({ mkDerivation, base, containers, diagrams-lib, fgl, graphviz , split @@ -80444,6 +80309,8 @@ self: { ]; description = "Backend for rendering diagrams directly to GTK windows"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "diagrams-haddock" = callPackage @@ -80552,10 +80419,10 @@ self: { }: mkDerivation { pname = "diagrams-lib"; - version = "1.4.5.1"; - sha256 = "1hkxp549i99s45qk8zmhjvz1xyyv3i0ffl8155bifkic6fd8y2gz"; - revision = "3"; - editedCabalFile = "1s8iyx86hd7p1h08nlmx8dj03fdzbwi417yw1qxc5ivd77ciqj61"; + version = "1.4.5.2"; + sha256 = "1vx51g9znb4a9bf20pjd9zr98wmh39avk2i06217p0iidcw8whz6"; + revision = "1"; + editedCabalFile = "14lxvlxdzkrhdgblgglr5k0rwak0yl4gzawqkfla04mkg6hkh5bb"; libraryHaskellDepends = [ active adjunctions array base bytestring cereal colour containers data-default-class diagrams-core diagrams-solve directory @@ -80587,8 +80454,8 @@ self: { pname = "diagrams-lib"; version = "1.4.5.3"; sha256 = "0h762gc9l4gsbx3r035mkfrwqblwshjaxk943bq277rw9d5vi7ic"; - revision = "1"; - editedCabalFile = "04ss5jkrddlh77gq331w9na3v3gyallqs84vvhj9pfmjcgkbsm1j"; + revision = "3"; + editedCabalFile = "10m1nh6swfh4jvky2mx692g0jp1xk1cym9gvzljmmni3pf41mzsf"; libraryHaskellDepends = [ active adjunctions array base bytestring cereal colour containers data-default-class diagrams-core diagrams-solve directory @@ -80891,7 +80758,9 @@ self: { executableHaskellDepends = [ base ]; description = "I/O in Haskell Report 1.2"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "examples"; + broken = true; }) {}; "dib" = callPackage @@ -81094,6 +80963,17 @@ self: { broken = true; }) {}; + "diff-loc" = callPackage + ({ mkDerivation, base, fingertree, show-combinators }: + mkDerivation { + pname = "diff-loc"; + version = "0.1.0.0"; + sha256 = "08sbxkf804bq3lwr9s1k1vigq7yrdjgicrj114zi14cdi4168k3x"; + libraryHaskellDepends = [ base fingertree show-combinators ]; + description = "Map file locations across diffs"; + license = lib.licenses.mit; + }) {}; + "diff-parse" = callPackage ({ mkDerivation, attoparsec, base, hspec, text }: mkDerivation { @@ -81218,6 +81098,7 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "differential"; + broken = true; }) {}; "diffmap" = callPackage @@ -81285,6 +81166,19 @@ self: { license = lib.licenses.bsd3; }) {inherit (pkgs) zlib;}; + "digest_0_0_1_4" = callPackage + ({ mkDerivation, base, bytestring, zlib }: + mkDerivation { + pname = "digest"; + version = "0.0.1.4"; + sha256 = "05pc5l4bwddszc6vy1hazwi1dnrxg323521gdkis9cvh7zs2a4gr"; + libraryHaskellDepends = [ base bytestring ]; + libraryPkgconfigDepends = [ zlib ]; + description = "Various hashes for bytestrings; CRC32 and Adler32 for now"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {inherit (pkgs) zlib;}; + "digest-pure" = callPackage ({ mkDerivation, array, base, bytestring, digest, QuickCheck }: mkDerivation { @@ -81497,6 +81391,8 @@ self: { ]; description = "Snap backend for the digestive-functors library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "digit" = callPackage @@ -81569,6 +81465,8 @@ self: { testHaskellDepends = [ base fgl hashable massiv QuickCheck ]; description = "Directed Graphs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dihaa" = callPackage @@ -81604,27 +81502,6 @@ self: { }) {}; "dimensional" = callPackage - ({ mkDerivation, base, criterion, deepseq, doctest, exact-pi, Glob - , hspec, hspec-discover, ieee754, numtype-dk, QuickCheck - , semigroups, template-haskell, vector - }: - mkDerivation { - pname = "dimensional"; - version = "1.4"; - sha256 = "19w6plp97ylwqgwzhfy54cvjvh0dd1gj843y59cmryckh80jap8s"; - libraryHaskellDepends = [ - base deepseq exact-pi ieee754 numtype-dk semigroups vector - ]; - testHaskellDepends = [ - base doctest Glob hspec QuickCheck template-haskell - ]; - testToolDepends = [ hspec-discover ]; - benchmarkHaskellDepends = [ base criterion deepseq ]; - description = "Statically checked physical dimensions"; - license = lib.licenses.bsd3; - }) {}; - - "dimensional_1_5" = callPackage ({ mkDerivation, base, criterion, deepseq, doctest, exact-pi, Glob , hspec, hspec-discover, ieee754, numtype-dk, QuickCheck , template-haskell, vector @@ -81643,7 +81520,6 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq ]; description = "Statically checked physical dimensions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "dimensional-codata" = callPackage @@ -81667,7 +81543,6 @@ self: { description = "Statically checked physical dimensions, implemented using type families"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "dimensions" = callPackage @@ -81683,6 +81558,7 @@ self: { ]; description = "Safe type-level dimensionality for multidimensional data"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "dingo-core" = callPackage @@ -81793,6 +81669,7 @@ self: { ]; description = "Gemini client"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "diohsc"; }) {}; @@ -82180,8 +82057,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "A small library for working with directories"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "disassembler" = callPackage @@ -82308,8 +82183,6 @@ self: { executableHaskellDepends = [ base bytestring text unliftio ]; description = "Write bots for Discord in Haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "discord-haskell-voice" = callPackage @@ -82388,6 +82261,7 @@ self: { license = lib.licenses.mpl20; hydraPlatforms = lib.platforms.none; mainProgram = "discord-register-exe"; + broken = true; }) {}; "discord-rest" = callPackage @@ -82512,36 +82386,6 @@ self: { }) {}; "discrimination" = callPackage - ({ mkDerivation, array, base, containers, contravariant, criterion - , deepseq, ghc-bignum, ghc-prim, hashable, primitive, promises - , QuickCheck, quickcheck-instances, splitmix, tasty - , tasty-quickcheck, transformers, unordered-containers, vector - , vector-algorithms - }: - mkDerivation { - pname = "discrimination"; - version = "0.4.1"; - sha256 = "0p0hryrp15bc8cjfr2hypkg35fy1m30hr19s9p6rj91cxxgjbfq2"; - revision = "1"; - editedCabalFile = "1iz2vfizkid17m1k9j1a1rdzr44ir2fgw0nnhg1drjlyirc09p9f"; - libraryHaskellDepends = [ - array base containers contravariant deepseq ghc-bignum ghc-prim - hashable primitive promises transformers - ]; - testHaskellDepends = [ - base containers criterion deepseq hashable QuickCheck - quickcheck-instances splitmix tasty tasty-quickcheck - unordered-containers vector vector-algorithms - ]; - benchmarkHaskellDepends = [ - base containers criterion deepseq ghc-prim hashable primitive - splitmix unordered-containers vector vector-algorithms - ]; - description = "Fast generic linear-time sorting, joins and container construction"; - license = lib.licenses.bsd3; - }) {}; - - "discrimination_0_5" = callPackage ({ mkDerivation, array, base, containers, contravariant, criterion , deepseq, ghc-bignum, ghc-prim, hashable, primitive, promises , QuickCheck, quickcheck-instances, splitmix, tasty @@ -82569,7 +82413,6 @@ self: { ]; description = "Fast generic linear-time sorting, joins and container construction"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "disjoint-containers" = callPackage @@ -82649,8 +82492,6 @@ self: { benchmarkHaskellDepends = [ base bytestring text ]; description = "On-disk storage, but referentially transparent"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "disk-free-space" = callPackage @@ -82682,6 +82523,8 @@ self: { ]; description = "Disk-based hash table"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "display" = callPackage @@ -83395,7 +83238,7 @@ self: { ]; description = "Types and functions to manipulate the Nixpkgs distribution"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.sternenseemann ]; }) {}; "distribution-opensuse" = callPackage @@ -83804,52 +83647,27 @@ self: { "dnf-repo" = callPackage ({ mkDerivation, base, directory, extra, filepath, Glob - , http-directory, simple-cmd, simple-cmd-args + , http-directory, simple-cmd, simple-cmd-args, unix }: mkDerivation { pname = "dnf-repo"; - version = "0.5.1"; - sha256 = "158gfmdwf77yd623782pjv4702xjnqfr5dxwl4chrbanvsdfg7si"; + version = "0.5.2"; + sha256 = "0h3ik35jr1x142lsdififxkh6zz8c0frw3vvfn4nzg7cx5dxa1ng"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; executableHaskellDepends = [ base directory extra filepath Glob http-directory simple-cmd - simple-cmd-args + simple-cmd-args unix ]; testHaskellDepends = [ base simple-cmd ]; description = "DNF wrapper tool to control repos"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "dnf-repo"; - broken = true; }) {}; "dns" = callPackage - ({ mkDerivation, array, async, attoparsec, auto-update, base - , base16-bytestring, base64-bytestring, bytestring, containers - , cryptonite, doctest, hourglass, hspec, iproute, mtl, network - , psqueues, QuickCheck, word8 - }: - mkDerivation { - pname = "dns"; - version = "4.0.1"; - sha256 = "1jv89bdhvwb51d9h9157k2r1cg7x0gzari91lddwvghrkx8v9k90"; - libraryHaskellDepends = [ - array async attoparsec auto-update base base16-bytestring - base64-bytestring bytestring containers cryptonite hourglass - iproute mtl network psqueues - ]; - testHaskellDepends = [ - base bytestring doctest hspec iproute network QuickCheck word8 - ]; - doHaddock = false; - testTarget = "spec"; - description = "DNS library in Haskell"; - license = lib.licenses.bsd3; - }) {}; - - "dns_4_1_0" = callPackage ({ mkDerivation, array, async, attoparsec, auto-update, base , base16-bytestring, base64-bytestring, bytestring, containers , cryptonite, doctest, hourglass, hspec, hspec-discover, iproute @@ -83872,7 +83690,6 @@ self: { testTarget = "spec"; description = "DNS library in Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "dns-patterns" = callPackage @@ -83892,8 +83709,6 @@ self: { ]; description = "DNS name parsing and pattern matching utilities"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "dnscache" = callPackage @@ -83914,6 +83729,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "massdns"; + broken = true; }) {}; "dnsrbl" = callPackage @@ -83967,8 +83783,6 @@ self: { testHaskellDepends = [ base indexed ]; description = "Generalize do-notation to work on monads and indexed monads simultaneously"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "do-notation-dsl" = callPackage @@ -84054,7 +83868,6 @@ self: { libraryHaskellDepends = [ base dobutokO-frequency ]; description = "A library to deal with SoX effects and possibilities"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "dobutokO-frequency" = callPackage @@ -84066,8 +83879,6 @@ self: { libraryHaskellDepends = [ base ]; description = "Helps to create experimental music. Working with frequencies and types."; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "dobutokO-poetry" = callPackage @@ -84381,25 +84192,6 @@ self: { }) {}; "doclayout" = callPackage - ({ mkDerivation, base, containers, criterion, emojis, mtl, safe - , tasty, tasty-golden, tasty-hunit, tasty-quickcheck, text - }: - mkDerivation { - pname = "doclayout"; - version = "0.3.1.1"; - sha256 = "1p9kgjlf7y4p1symvkwndgs4lvyw2c45bsgld09y9r4aiqbhdrxp"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ base containers emojis mtl safe text ]; - testHaskellDepends = [ - base emojis mtl tasty tasty-golden tasty-hunit tasty-quickcheck - text - ]; - benchmarkHaskellDepends = [ base criterion mtl text ]; - description = "A prettyprinting library for laying out text documents"; - license = lib.licenses.bsd3; - }) {}; - - "doclayout_0_4" = callPackage ({ mkDerivation, base, containers, criterion, deepseq, emojis, mtl , safe, tasty, tasty-golden, tasty-hunit, tasty-quickcheck, text }: @@ -84420,7 +84212,6 @@ self: { ]; description = "A prettyprinting library for laying out text documents"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "docopt" = callPackage @@ -84441,6 +84232,8 @@ self: { ]; description = "A command-line interface parser that will make you smile"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "docrecords" = callPackage @@ -84481,32 +84274,6 @@ self: { }) {}; "doctemplates" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, criterion - , doclayout, filepath, Glob, HsYAML, mtl, parsec, safe, scientific - , tasty, tasty-golden, tasty-hunit, temporary, text - , text-conversions, vector - }: - mkDerivation { - pname = "doctemplates"; - version = "0.10.0.1"; - sha256 = "08l8lgmvn83xwbdlh4m2jljj5gcyxiq1vjd1ggysv36d81swsg1x"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson base containers doclayout filepath HsYAML mtl parsec safe - scientific text text-conversions vector - ]; - testHaskellDepends = [ - aeson base bytestring containers doclayout filepath Glob tasty - tasty-golden tasty-hunit temporary text - ]; - benchmarkHaskellDepends = [ - aeson base containers criterion doclayout filepath mtl text - ]; - description = "Pandoc-style document templates"; - license = lib.licenses.bsd3; - }) {}; - - "doctemplates_0_10_0_2" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, criterion , doclayout, filepath, Glob, HsYAML, mtl, parsec, safe, scientific , tasty, tasty-golden, tasty-hunit, temporary, text @@ -84532,10 +84299,36 @@ self: { ]; description = "Pandoc-style document templates"; license = lib.licenses.bsd3; + }) {}; + + "doctemplates_0_11" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, criterion + , doclayout, filepath, Glob, mtl, parsec, safe, scientific, tasty + , tasty-golden, tasty-hunit, temporary, text, text-conversions + , vector + }: + mkDerivation { + pname = "doctemplates"; + version = "0.11"; + sha256 = "0ssld40km4nf0r8fxgj9w0z8yfy8yiyyfcgxarhwx60f0dzhq270"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + aeson base containers doclayout filepath mtl parsec safe scientific + text text-conversions vector + ]; + testHaskellDepends = [ + aeson base bytestring containers doclayout filepath Glob tasty + tasty-golden tasty-hunit temporary text + ]; + benchmarkHaskellDepends = [ + aeson base containers criterion doclayout filepath mtl text + ]; + description = "Pandoc-style document templates"; + license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; }) {}; - "doctest" = callPackage + "doctest_0_18_2" = callPackage ({ mkDerivation, base, base-compat, code-page, deepseq, directory , exceptions, filepath, ghc, ghc-paths, hspec, hspec-core, HUnit , mockery, process, QuickCheck, setenv, silently, stringbuilder @@ -84562,10 +84355,11 @@ self: { ]; description = "Test interactive Haskell examples"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "doctest"; }) {}; - "doctest_0_20_1" = callPackage + "doctest" = callPackage ({ mkDerivation, base, base-compat, code-page, deepseq, directory , exceptions, filepath, ghc, ghc-paths, hspec, hspec-core , hspec-discover, HUnit, mockery, process, QuickCheck, setenv @@ -84593,7 +84387,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Test interactive Haskell examples"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "doctest"; }) {}; @@ -84663,6 +84456,23 @@ self: { mainProgram = "doctest-driver-gen"; }) {}; + "doctest-driver-gen_0_3_0_6" = callPackage + ({ mkDerivation, base, doctest }: + mkDerivation { + pname = "doctest-driver-gen"; + version = "0.3.0.6"; + sha256 = "0a4jdg4mzhdgfal7jp60yrlv63iv7d8f7nxc9aqvrl93mairny8l"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base doctest ]; + description = "Generate driver file for doctest's cabal integration"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "doctest-driver-gen"; + }) {}; + "doctest-exitcode-stdio" = callPackage ({ mkDerivation, base, doctest-lib, QuickCheck, semigroups , transformers @@ -84698,7 +84508,9 @@ self: { ]; description = "Alternative doctest implementation that extracts comments to modules"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "doctest-extract-0.1"; + broken = true; }) {}; "doctest-lib" = callPackage @@ -84723,6 +84535,8 @@ self: { pname = "doctest-parallel"; version = "0.2.5"; sha256 = "075y4yllpgfq0dlfd6y9nqhsdkxzb9s3jgb0v194l216kg5zsqzc"; + revision = "1"; + editedCabalFile = "1q81qjz9af9a57xyxz6kci28shl4r9y3lrl3rckknhqwcy1ahqz4"; libraryHaskellDepends = [ base base-compat Cabal code-page containers deepseq directory exceptions extra filepath ghc ghc-paths Glob pretty process random @@ -84740,6 +84554,35 @@ self: { license = lib.licenses.mit; }) {}; + "doctest-parallel_0_2_6" = callPackage + ({ mkDerivation, base, base-compat, Cabal, code-page, containers + , deepseq, directory, exceptions, extra, filepath, ghc, ghc-paths + , Glob, hspec, hspec-core, hspec-discover, HUnit, mockery, pretty + , process, QuickCheck, random, setenv, silently, stringbuilder, syb + , template-haskell, transformers, unordered-containers + }: + mkDerivation { + pname = "doctest-parallel"; + version = "0.2.6"; + sha256 = "13hjwhdjw8jrj07zxkrrfbzr0mrk8gwyis1rbdi4ld4jbq3rr1z7"; + libraryHaskellDepends = [ + base base-compat Cabal code-page containers deepseq directory + exceptions extra filepath ghc ghc-paths Glob pretty process random + syb template-haskell transformers unordered-containers + ]; + testHaskellDepends = [ + base base-compat code-page containers deepseq directory exceptions + filepath ghc ghc-paths hspec hspec-core hspec-discover HUnit + mockery process QuickCheck setenv silently stringbuilder syb + transformers + ]; + testToolDepends = [ hspec-discover ]; + doHaddock = false; + description = "Test interactive Haskell examples"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "doctest-prop" = callPackage ({ mkDerivation, base, doctest, HUnit, QuickCheck }: mkDerivation { @@ -84997,8 +84840,8 @@ self: { }: mkDerivation { pname = "domain"; - version = "0.1.1.3"; - sha256 = "0szq40sxd3cpq5mbgq9293643a5j45mr1p03lkxwny8xxhz6hs5a"; + version = "0.1.1.4"; + sha256 = "0fdpbcn2cyfpkp8qln87b27fqrsy95n7sb2x3bpwhbr5dzz55ih2"; libraryHaskellDepends = [ attoparsec base bytestring domain-core foldl hashable parser-combinators template-haskell template-haskell-compat-v0208 @@ -85011,7 +84854,6 @@ self: { ]; description = "Codegen helping you define domain models"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "domain-aeson" = callPackage @@ -85031,7 +84873,6 @@ self: { testHaskellDepends = [ domain rerebase ]; description = "Integration of domain with aeson"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "domain-auth" = callPackage @@ -85068,7 +84909,6 @@ self: { testHaskellDepends = [ cereal cereal-text domain rerebase ]; description = "Integration of domain with cereal"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "domain-core" = callPackage @@ -85077,8 +84917,8 @@ self: { }: mkDerivation { pname = "domain-core"; - version = "0.1.0.2"; - sha256 = "1x21f9nsikcbvf977sm4ckfc2cqfvkkk315kdax66sbd8f2ipgm2"; + version = "0.1.0.3"; + sha256 = "0wpi5qks29ij8m1s6x3kc66dw706xn28l6vlwfrccqw77603g85a"; libraryHaskellDepends = [ base template-haskell template-haskell-compat-v0208 text th-lego th-lift-instances @@ -85104,6 +84944,7 @@ self: { description = "Integration of domain with optics"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dominion" = callPackage @@ -85255,25 +85096,25 @@ self: { "dotenv" = callPackage ({ mkDerivation, base, base-compat, containers, directory , exceptions, hspec, hspec-discover, hspec-megaparsec, megaparsec - , optparse-applicative, process, text + , optparse-applicative, process, shellwords, text }: mkDerivation { pname = "dotenv"; - version = "0.9.0.2"; - sha256 = "0f0kzkkfvk7bmlxzq2z7b1rr374aa4qlh8pklbjaqg0drfhyyk6a"; + version = "0.9.0.3"; + sha256 = "163w2japbcdjzmhr7afq2rss7sp7gz2j8mylcc716x63gm3ws20h"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ base base-compat containers directory exceptions megaparsec process - text + shellwords text ]; executableHaskellDepends = [ base base-compat megaparsec optparse-applicative process text ]; testHaskellDepends = [ base base-compat containers directory exceptions hspec - hspec-megaparsec megaparsec process text + hspec-megaparsec megaparsec process shellwords text ]; testToolDepends = [ hspec-discover ]; description = "Loads environment variables from dotenv files"; @@ -85281,15 +85122,15 @@ self: { mainProgram = "dotenv"; }) {}; - "dotenv_0_9_0_3" = callPackage + "dotenv_0_10_0_0" = callPackage ({ mkDerivation, base, base-compat, containers, directory , exceptions, hspec, hspec-discover, hspec-megaparsec, megaparsec , optparse-applicative, process, shellwords, text }: mkDerivation { pname = "dotenv"; - version = "0.9.0.3"; - sha256 = "163w2japbcdjzmhr7afq2rss7sp7gz2j8mylcc716x63gm3ws20h"; + version = "0.10.0.0"; + sha256 = "04brkjk9a17xv2qv2xbsdxbil6ncrrzxcfji9q0civmxhj4vbcfq"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -85386,6 +85227,7 @@ self: { description = "dot language parsing and printing"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "double-conversion" = callPackage @@ -85396,6 +85238,8 @@ self: { pname = "double-conversion"; version = "2.0.4.1"; sha256 = "1hrpqh8lbw0kkryqsya95mfnnnj0pj7zswxrn6kvfy4rf7z8v2d4"; + revision = "2"; + editedCabalFile = "0qya075j3kz4jq1kx4951qvi9blh6hcqfd7vpcx8l8ql143ajvqs"; libraryHaskellDepends = [ base bytestring ghc-prim text ]; testHaskellDepends = [ base bytestring HUnit test-framework test-framework-hunit @@ -85405,6 +85249,26 @@ self: { license = lib.licenses.bsd3; }) {}; + "double-conversion_2_0_4_2" = callPackage + ({ mkDerivation, base, bytestring, ghc-prim, HUnit, test-framework + , test-framework-hunit, test-framework-quickcheck2, text + }: + mkDerivation { + pname = "double-conversion"; + version = "2.0.4.2"; + sha256 = "0r7c1801gzdm5x1flmpx8ajxygbc9dl7sgdj0xn3bpm71wgvrf4s"; + revision = "2"; + editedCabalFile = "1mpnx4m2pg5crfz9k8wamh5mgsha0np3ynnllrmglmwh54gvfjj3"; + libraryHaskellDepends = [ base bytestring ghc-prim text ]; + testHaskellDepends = [ + base bytestring HUnit test-framework test-framework-hunit + test-framework-quickcheck2 text + ]; + description = "Fast conversion between single and double precision floating point and text"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "double-extra" = callPackage ({ mkDerivation, aeson, base, bytestring, cassava, deepseq , double-conversion, rawstring-qm, text @@ -85577,8 +85441,6 @@ self: { ]; description = "Reverse mode automatic differentiation"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "download" = callPackage @@ -85894,16 +85756,17 @@ self: { "dr-cabal" = callPackage ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, async, base , bytestring, colourista, optparse-applicative, relude + , terminal-size }: mkDerivation { pname = "dr-cabal"; - version = "0.1.0.0"; - sha256 = "046fm8pdbz2kib4n2nravy15skqwl031j4f0m58d0x0ksjq5yq4i"; + version = "0.2.0.0"; + sha256 = "066016xcg3nhjs8b746kyi05r7gcsglqv7rkz2py54pvi1p7sj35"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson aeson-pretty ansi-terminal async base bytestring colourista - optparse-applicative relude + optparse-applicative relude terminal-size ]; executableHaskellDepends = [ base relude ]; description = "See README for more info"; @@ -85964,7 +85827,6 @@ self: { executableHaskellDepends = [ base ]; description = "Actor library for Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "draw-poker" = callPackage @@ -86091,8 +85953,6 @@ self: { libraryHaskellDepends = [ base exceptions mtl transformers ]; description = "Boozy streaming library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "driving-classes-plugin" = callPackage @@ -86228,6 +86088,8 @@ self: { libraryHaskellDepends = [ array base bytestring pureMD5 ]; description = "An implementation of the Drunken Bishop visual fingerprinting algorithm"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ds-kanren" = callPackage @@ -86509,6 +86371,7 @@ self: { description = "(Fast) Dynamic Time Warping"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dual" = callPackage @@ -86685,6 +86548,7 @@ self: { description = "A computer “algebra” system that knows nothing about algebra, at the core"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dump" = callPackage @@ -86732,8 +86596,8 @@ self: { }: mkDerivation { pname = "dunai"; - version = "0.8.3"; - sha256 = "1xkc7a337g6xg2wgj1sphpmvj22y2fkifs36s7iws7cr7fqx1a1p"; + version = "0.9.1"; + sha256 = "0krgbs9xqar78815xrgqbj63678jm0mjbsvnqdayh0c2awf9i8bj"; libraryHaskellDepends = [ base MonadRandom simple-affine-space transformers transformers-base ]; @@ -86743,14 +86607,14 @@ self: { maintainers = [ lib.maintainers.turion ]; }) {}; - "dunai_0_9_1" = callPackage + "dunai_0_9_2" = callPackage ({ mkDerivation, base, MonadRandom, simple-affine-space, tasty , tasty-hunit, transformers, transformers-base }: mkDerivation { pname = "dunai"; - version = "0.9.1"; - sha256 = "0krgbs9xqar78815xrgqbj63678jm0mjbsvnqdayh0c2awf9i8bj"; + version = "0.9.2"; + sha256 = "08skmwkfwiyy83s764fcpa9i8zny10bdbpv9wha6fjqr1b80i80f"; libraryHaskellDepends = [ base MonadRandom simple-affine-space transformers transformers-base ]; @@ -86781,8 +86645,8 @@ self: { ({ mkDerivation, base, dunai, normaldistribution, QuickCheck }: mkDerivation { pname = "dunai-test"; - version = "0.9.1"; - sha256 = "0p78yvn98vp3qjd6dx23nwwzq6v6sks2gp9cycmcnjk3yn8470j9"; + version = "0.9.2"; + sha256 = "0ghc1sg1s31qg1z1sg1mzm9qad39ggrkr064mwbwsl2b5xlsnlr4"; libraryHaskellDepends = [ base dunai normaldistribution QuickCheck ]; @@ -86858,6 +86722,8 @@ self: { ]; description = "A tiny compile-time time utility library inspired by zeit/ms"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dustme" = callPackage @@ -87141,6 +87007,8 @@ self: { testHaskellDepends = [ base ]; description = "FRP for brick Terminal user interface library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "dyna-gloss" = callPackage @@ -87827,6 +87695,7 @@ self: { ]; description = "Pure, type-indexed haskell vector, matrix, and tensor library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "easytensor-vulkan" = callPackage @@ -87838,6 +87707,7 @@ self: { libraryHaskellDepends = [ base dimensions easytensor vulkan-api ]; description = "Use easytensor with vulkan-api"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "easytest" = callPackage @@ -87951,6 +87821,8 @@ self: { benchmarkHaskellDepends = [ base bytestring criterion random ]; description = "Elliptic Curve Cryptography for Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "eccrypto-ed25519-bindings" = callPackage @@ -87963,7 +87835,6 @@ self: { description = "provides \"ed25519\" API using \"eccrypto\""; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ecdsa" = callPackage @@ -88530,7 +88401,6 @@ self: { description = "Embeds effect systems and program logics into Haskell using graded monads and parameterised monads"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "effect-stack" = callPackage @@ -88760,6 +88630,7 @@ self: { description = "Simulation interpreter for FLINT policy descriptions"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "egison" = callPackage @@ -88943,8 +88814,6 @@ self: { ]; description = "Minimalistic SMTP client for Haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ehs" = callPackage @@ -89023,7 +88892,9 @@ self: { executableToolDepends = [ markdown-unlit ]; description = "IO with Exceptions tracked on the type-level"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; mainProgram = "readme"; + broken = true; }) {}; "either" = callPackage @@ -89409,6 +89280,29 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "elasticsearch-interchange" = callPackage + ({ mkDerivation, base, bytebuild, byteslice, bytestring, json-query + , json-syntax, pretty-show, primitive, tasty, tasty-golden + , text-short, unpacked-maybe-text + }: + mkDerivation { + pname = "elasticsearch-interchange"; + version = "0.1.0.0"; + sha256 = "0js90hcq3m1b928fywcvm8yyc1d35ya630zxdxpbylmqv4h0yz6y"; + libraryHaskellDepends = [ + base bytebuild json-query json-syntax primitive text-short + unpacked-maybe-text + ]; + testHaskellDepends = [ + base bytebuild byteslice bytestring json-query json-syntax + pretty-show primitive tasty tasty-golden text-short + unpacked-maybe-text + ]; + description = "Serialization of Elasticsearch requests and responses"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "elbow" = callPackage ({ mkDerivation, base, hmatrix, safe }: mkDerivation { @@ -89535,8 +89429,8 @@ self: { }: mkDerivation { pname = "eliminators"; - version = "0.8"; - sha256 = "00prqf3qnhsswigcx87nq9dfaq9vjvzgcgbpnxrpgw9k36p9mdh2"; + version = "0.9"; + sha256 = "118bd51hfbh29yhs9ai3srk431avwsmccm1500mp21fbwxq8phsj"; libraryHaskellDepends = [ base extra singleton-nats singletons-base template-haskell th-abstraction th-desugar @@ -89545,6 +89439,8 @@ self: { testToolDepends = [ hspec-discover ]; description = "Dependently typed elimination functions using singletons"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "eliminators_0_9_1" = callPackage @@ -89565,6 +89461,7 @@ self: { description = "Dependently typed elimination functions using singletons"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "elision" = callPackage @@ -90041,8 +89938,8 @@ self: { }: mkDerivation { pname = "elminator"; - version = "0.2.4.1"; - sha256 = "0b8xn26k2pmb7m5v6yn1l2kv4fv94qjl7k8563zq2aqkrfwdm068"; + version = "0.2.4.2"; + sha256 = "1icmj116hlmgjbss1fnbzav327dl5ga8l092791rc5bf6m0m644z"; libraryHaskellDepends = [ aeson base containers mtl template-haskell text ]; @@ -90051,8 +89948,6 @@ self: { ]; description = "Generate ELM types/encoders/decoders from Haskell types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "elo" = callPackage @@ -90116,25 +90011,6 @@ self: { }) {}; "elynx" = callPackage - ({ mkDerivation, aeson, base, bytestring, elynx-tools - , optparse-applicative, slynx, tlynx - }: - mkDerivation { - pname = "elynx"; - version = "0.6.1.1"; - sha256 = "16kqf4v9ikrd6w19zg3lrpy69xsdhr0p1hni72wi2i8glrzmq4qw"; - isLibrary = false; - isExecutable = true; - executableHaskellDepends = [ - aeson base bytestring elynx-tools optparse-applicative slynx tlynx - ]; - description = "Validate and (optionally) redo ELynx analyses"; - license = lib.licenses.gpl3Plus; - mainProgram = "elynx"; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "elynx_0_7_0_1" = callPackage ({ mkDerivation, aeson, base, bytestring, elynx-tools , optparse-applicative, slynx, tlynx }: @@ -90149,34 +90025,11 @@ self: { ]; description = "Validate and (optionally) redo ELynx analyses"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "elynx"; maintainers = [ lib.maintainers.dschrempf ]; }) {}; "elynx-markov" = callPackage - ({ mkDerivation, async, attoparsec, base, bytestring, containers - , elynx-seq, elynx-tools, hmatrix, hspec, integration - , math-functions, mwc-random, primitive, statistics, vector - }: - mkDerivation { - pname = "elynx-markov"; - version = "0.6.1.1"; - sha256 = "1xwvnfyil8kp2qxcv8h4k623qn8kajp8mj4a6jbjjp8qk70rlbrf"; - libraryHaskellDepends = [ - async attoparsec base bytestring containers elynx-seq hmatrix - integration math-functions mwc-random primitive statistics vector - ]; - testHaskellDepends = [ - base containers elynx-tools hmatrix hspec mwc-random vector - ]; - benchmarkHaskellDepends = [ base ]; - description = "Simulate molecular sequences along trees"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "elynx-markov_0_7_0_1" = callPackage ({ mkDerivation, async, attoparsec, base, bytestring, containers , elynx-seq, elynx-tools, hmatrix, hspec, integration , math-functions, mwc-random, random, statistics, vector @@ -90195,24 +90048,10 @@ self: { benchmarkHaskellDepends = [ base ]; description = "Simulate molecular sequences along trees"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; "elynx-nexus" = callPackage - ({ mkDerivation, attoparsec, base, bytestring, hspec }: - mkDerivation { - pname = "elynx-nexus"; - version = "0.6.1.1"; - sha256 = "0qx28djaj3k56wp0qqcdy7zn90alr24q05l9a93qp0wqahlwmgy3"; - libraryHaskellDepends = [ attoparsec base bytestring ]; - testHaskellDepends = [ base hspec ]; - description = "Import and export Nexus files"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "elynx-nexus_0_7_0_1" = callPackage ({ mkDerivation, attoparsec, base, bytestring, hspec }: mkDerivation { pname = "elynx-nexus"; @@ -90222,32 +90061,10 @@ self: { testHaskellDepends = [ base hspec ]; description = "Import and export Nexus files"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; "elynx-seq" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring, containers - , elynx-tools, hspec, matrices, mwc-random, parallel, primitive - , vector, vector-th-unbox, word8 - }: - mkDerivation { - pname = "elynx-seq"; - version = "0.6.1.1"; - sha256 = "1mcdg4nv9hdmw0lcr2vhy748d3ykcrlplc8hz14ywkxaxlrqb1sm"; - libraryHaskellDepends = [ - aeson attoparsec base bytestring containers matrices mwc-random - parallel primitive vector vector-th-unbox word8 - ]; - testHaskellDepends = [ - base bytestring elynx-tools hspec matrices vector - ]; - description = "Handle molecular sequences"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "elynx-seq_0_7_0_1" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, containers , elynx-tools, hspec, matrices, parallel, primitive, random, vector , vector-th-unbox, word8 @@ -90265,31 +90082,10 @@ self: { ]; description = "Handle molecular sequences"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; "elynx-tools" = callPackage - ({ mkDerivation, aeson, attoparsec, base, base16-bytestring - , bytestring, cryptohash-sha256, directory, hmatrix, mwc-random - , optparse-applicative, template-haskell, time, transformers - , vector, zlib - }: - mkDerivation { - pname = "elynx-tools"; - version = "0.6.1.1"; - sha256 = "089dgc8c2y4wxhi0xgvql5yfgfbpwnj8sg88hl7nvgnw5sh4jvs2"; - libraryHaskellDepends = [ - aeson attoparsec base base16-bytestring bytestring - cryptohash-sha256 directory hmatrix mwc-random optparse-applicative - template-haskell time transformers vector zlib - ]; - description = "Tools for ELynx"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "elynx-tools_0_7_0_1" = callPackage ({ mkDerivation, aeson, attoparsec, base, base16-bytestring , bytestring, cryptohash-sha256, directory, hmatrix , optparse-applicative, random, template-haskell, time @@ -90306,39 +90102,10 @@ self: { ]; description = "Tools for ELynx"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; "elynx-tree" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring, comonad - , containers, criterion, data-default, data-default-class, deepseq - , double-conversion, elynx-nexus, elynx-tools, hspec - , math-functions, microlens, mwc-random, parallel, primitive - , QuickCheck, quickcheck-classes, statistics - }: - mkDerivation { - pname = "elynx-tree"; - version = "0.6.1.1"; - sha256 = "0jhr5czybmp98cxzipa01wjkxz9jbryqlj02lcmbxlal7sqifsy4"; - libraryHaskellDepends = [ - aeson attoparsec base bytestring comonad containers - data-default-class deepseq double-conversion elynx-nexus - math-functions mwc-random parallel primitive statistics - ]; - testHaskellDepends = [ - attoparsec base bytestring containers data-default elynx-tools - hspec QuickCheck quickcheck-classes - ]; - benchmarkHaskellDepends = [ - base criterion elynx-tools microlens mwc-random parallel - ]; - description = "Handle phylogenetic trees"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "elynx-tree_0_7_0_1" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, comonad , containers, criterion, data-default, data-default-class, deepseq , double-conversion, elynx-nexus, elynx-tools, hspec @@ -90363,44 +90130,74 @@ self: { ]; description = "Handle phylogenetic trees"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; "ema" = callPackage - ({ mkDerivation, aeson, async, base, blaze-html, blaze-markup - , constraints-extras, containers, data-default, dependent-sum - , dependent-sum-template, directory, file-embed, filepath - , filepattern, fsnotify, generic-optics, generics-sop, http-types - , lvar, monad-logger, monad-logger-extras, mtl, neat-interpolation - , optics-core, optparse-applicative, pandoc, pandoc-types - , raw-strings-qq, relude, sop-core, template-haskell, text, time - , unionmount, unliftio, url-slug, wai, wai-middleware-static - , wai-websockets, warp, websockets + ({ mkDerivation, aeson, async, base, constraints-extras + , data-default, dependent-sum, dependent-sum-template, directory + , file-embed, filepath, filepattern, http-types, lvar, monad-logger + , monad-logger-extras, mtl, neat-interpolation, optics-core + , optparse-applicative, relude, sop-core, text, unliftio, url-slug + , wai, wai-middleware-static, wai-websockets, warp, websockets }: mkDerivation { pname = "ema"; - version = "0.8.2.0"; - sha256 = "158n1qizqncl4q4szk9jwjdnj1y0jsbpzyi4hjslk4zkvkkscwqa"; + version = "0.10.0.0"; + sha256 = "0ayr42l8jwnapr6hkawjv7x9xx2b6dm4bhj2f4qy70jg2w1j6cv9"; enableSeparateDataOutput = true; libraryHaskellDepends = [ - aeson async base blaze-html blaze-markup constraints-extras - containers data-default dependent-sum dependent-sum-template - directory file-embed filepath filepattern fsnotify generic-optics - generics-sop http-types lvar monad-logger monad-logger-extras mtl - neat-interpolation optics-core optparse-applicative pandoc - pandoc-types relude sop-core template-haskell text time unionmount - unliftio url-slug wai wai-middleware-static wai-websockets warp - websockets - ]; - testHaskellDepends = [ - base generics-sop raw-strings-qq template-haskell text url-slug + aeson async base constraints-extras data-default dependent-sum + dependent-sum-template directory file-embed filepath filepattern + http-types lvar monad-logger monad-logger-extras mtl + neat-interpolation optics-core optparse-applicative relude sop-core + text unliftio url-slug wai wai-middleware-static wai-websockets + warp websockets ]; description = "Static site generator library with hot reload"; license = lib.licenses.agpl3Only; maintainers = [ lib.maintainers.maralorn ]; }) {}; + "ema-extra" = callPackage + ({ mkDerivation, base, containers, data-default, dependent-sum, ema + , ema-generics, filepath, generics-sop, monad-logger, optics-core + , pandoc, relude, sop-core, text, time, unionmount, unliftio + , url-slug + }: + mkDerivation { + pname = "ema-extra"; + version = "0.10.0.0"; + sha256 = "0knp37kxhkk6chbbxdrlj39s3wq081j2jjaln73cwvvkrsr09bpv"; + libraryHaskellDepends = [ + base containers data-default dependent-sum ema ema-generics + filepath generics-sop monad-logger optics-core pandoc relude + sop-core text time unionmount unliftio url-slug + ]; + description = "Useful route types for Ema"; + license = lib.licenses.agpl3Only; + }) {}; + + "ema-generics" = callPackage + ({ mkDerivation, base, ema, generic-optics, generics-sop + , optics-core, raw-strings-qq, relude, sop-core, template-haskell + , text, url-slug + }: + mkDerivation { + pname = "ema-generics"; + version = "0.10.0.0"; + sha256 = "03a2ayxiaa12x0y9388rh10ixprbivjrv7w7rgy1mxk0649f024a"; + libraryHaskellDepends = [ + base ema generic-optics generics-sop optics-core relude sop-core + template-haskell + ]; + testHaskellDepends = [ + base ema generics-sop raw-strings-qq template-haskell text url-slug + ]; + description = "Generic deriving for Ema routes"; + license = lib.licenses.agpl3Only; + }) {}; + "emacs-keys" = callPackage ({ mkDerivation, base, doctest, split, tasty, tasty-hspec , tasty-quickcheck, template-haskell, th-lift, xkbcommon @@ -90502,8 +90299,8 @@ self: { }: mkDerivation { pname = "email-validate"; - version = "2.3.2.16"; - sha256 = "1cr3y23d1a8kkbfjwmqr6lvd330k3lh8p1c8pqjswy5sq5az3rdq"; + version = "2.3.2.18"; + sha256 = "11bi5y5qmri62nl34nl5pv4zs59bjpjknw560yw5ds62gsi2sjcp"; libraryHaskellDepends = [ attoparsec base bytestring template-haskell ]; @@ -90595,30 +90392,31 @@ self: { "emanote" = callPackage ({ mkDerivation, aeson, aeson-extra, aeson-optics, async, base , blaze-html, bytestring, commonmark, commonmark-extensions - , commonmark-pandoc, commonmark-simple, containers, data-default - , dependent-sum, directory, ema, filepath, filepattern, fsnotify - , hedgehog, heist-emanote, heist-extra, hspec, hspec-hedgehog - , ixset-typed, lvar, map-syntax, megaparsec, monad-logger - , monad-logger-extras, mtl, neat-interpolation, optics-core - , optics-th, optparse-applicative, pandoc, pandoc-link-context - , pandoc-types, parsec, path-tree, process-extras, profunctors - , relude, shower, some, stm, tagged, tagtree, tailwind, text, time - , tomland, unionmount, unliftio, unordered-containers, uri-encode - , url-slug, uuid, which, with-utf8, xmlhtml, yaml + , commonmark-pandoc, commonmark-simple, commonmark-wikilink + , containers, data-default, dependent-sum, directory, ema, filepath + , filepattern, fsnotify, hedgehog, heist, heist-extra, hspec + , hspec-hedgehog, ixset-typed, lvar, map-syntax, megaparsec + , monad-logger, monad-logger-extras, mtl, neat-interpolation + , optics-core, optics-th, optparse-applicative, pandoc + , pandoc-link-context, pandoc-types, parsec, path-tree + , process-extras, profunctors, relude, shower, some, stm, tagged + , tagtree, tailwind, text, time, tomland, unionmount, unliftio + , unordered-containers, uri-encode, url-slug, uuid, which + , with-utf8, xmlhtml, yaml }: mkDerivation { pname = "emanote"; - version = "0.8.0.0"; - sha256 = "0w26417vx76lzi6b84c48s462bmsy28ayn8gxi9cpgqifrmydz78"; + version = "1.0.0.0"; + sha256 = "0yysrrcdgp06d0s50am86xzjp4d67d1in5ibwdpvbv9knxnk8w5v"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson aeson-extra aeson-optics async base blaze-html bytestring commonmark commonmark-extensions commonmark-pandoc - commonmark-simple containers data-default dependent-sum directory - ema filepath filepattern fsnotify hedgehog heist-emanote - heist-extra hspec hspec-hedgehog ixset-typed lvar map-syntax + commonmark-simple commonmark-wikilink containers data-default + dependent-sum directory ema filepath filepattern fsnotify hedgehog + heist heist-extra hspec hspec-hedgehog ixset-typed lvar map-syntax megaparsec monad-logger monad-logger-extras mtl neat-interpolation optics-core optics-th optparse-applicative pandoc pandoc-link-context pandoc-types parsec path-tree process-extras @@ -90629,9 +90427,22 @@ self: { executableHaskellDepends = [ aeson aeson-extra aeson-optics async base blaze-html bytestring commonmark commonmark-extensions commonmark-pandoc - commonmark-simple containers data-default dependent-sum directory - ema filepath filepattern fsnotify hedgehog heist-emanote - heist-extra hspec hspec-hedgehog ixset-typed lvar map-syntax + commonmark-simple commonmark-wikilink containers data-default + dependent-sum directory ema filepath filepattern fsnotify hedgehog + heist heist-extra hspec hspec-hedgehog ixset-typed lvar map-syntax + megaparsec monad-logger monad-logger-extras mtl neat-interpolation + optics-core optics-th optparse-applicative pandoc + pandoc-link-context pandoc-types parsec path-tree process-extras + profunctors relude shower some stm tagged tagtree tailwind text + time tomland unionmount unliftio unordered-containers uri-encode + url-slug uuid which with-utf8 xmlhtml yaml + ]; + testHaskellDepends = [ + aeson aeson-extra aeson-optics async base blaze-html bytestring + commonmark commonmark-extensions commonmark-pandoc + commonmark-simple commonmark-wikilink containers data-default + dependent-sum directory ema filepath filepattern fsnotify hedgehog + heist heist-extra hspec hspec-hedgehog ixset-typed lvar map-syntax megaparsec monad-logger monad-logger-extras mtl neat-interpolation optics-core optics-th optparse-applicative pandoc pandoc-link-context pandoc-types parsec path-tree process-extras @@ -90753,6 +90564,7 @@ self: { ]; description = "Empirical Mode Decomposition and Hilbert-Huang Transform"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "emgm" = callPackage @@ -90876,6 +90688,8 @@ self: { ]; description = "Safe string conversion and encoding"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "encoding" = callPackage @@ -90956,6 +90770,8 @@ self: { ]; description = "Endomorphism utilities"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "eng-stemmer" = callPackage @@ -91544,18 +91360,6 @@ self: { }) {}; "envparse" = callPackage - ({ mkDerivation, base, containers, hspec, text }: - mkDerivation { - pname = "envparse"; - version = "0.4.1"; - sha256 = "00133c2wcxw8hj93srg39l539zvsahiz6jl4pi6wf6lc1zqdm0d1"; - libraryHaskellDepends = [ base containers ]; - testHaskellDepends = [ base containers hspec text ]; - description = "Parse environment variables"; - license = lib.licenses.bsd3; - }) {}; - - "envparse_0_5_0" = callPackage ({ mkDerivation, base, containers, hspec, text }: mkDerivation { pname = "envparse"; @@ -91565,7 +91369,6 @@ self: { testHaskellDepends = [ base containers hspec text ]; description = "Parse environment variables"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "envstatus" = callPackage @@ -91743,8 +91546,6 @@ self: { libraryHaskellDepends = [ base exceptions mtl ]; description = "Basic Erlang-like process support for Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "epub" = callPackage @@ -91856,7 +91657,9 @@ self: { ]; description = "Shell command for finding equal files"; license = "GPL"; + hydraPlatforms = lib.platforms.none; mainProgram = "equal-files"; + broken = true; }) {}; "equational-reasoning" = callPackage @@ -91867,8 +91670,8 @@ self: { pname = "equational-reasoning"; version = "0.7.0.1"; sha256 = "1xp5vmz19idc29xidr7q65hsnhfnl3ca80hxxfllsqpyyh32qlhn"; - revision = "1"; - editedCabalFile = "0bi5xmaq5cbs1jqz6naw4706wv5yjgx1g4vibp872iqzcjc86yka"; + revision = "2"; + editedCabalFile = "0gi4whsdzlkpmqjpvlzv29jhxmia8xx1ni17ay9nw41lw4q5zg8v"; libraryHaskellDepends = [ base containers template-haskell th-desugar void ]; @@ -91979,6 +91782,7 @@ self: { libraryHaskellDepends = [ base polynomial ]; description = "Native Haskell implementation of the interface from the erf package"; license = "GPL"; + hydraPlatforms = lib.platforms.none; }) {}; "erlang" = callPackage @@ -92105,18 +91909,6 @@ self: { }) {}; "error" = callPackage - ({ mkDerivation, base, doctest, text }: - mkDerivation { - pname = "error"; - version = "0.3.0.0"; - sha256 = "1vbmfjcx82b5ngzqda74j4xwqhzwhgl9ikh65ipzk2x26fzkww84"; - libraryHaskellDepends = [ base text ]; - testHaskellDepends = [ base doctest ]; - description = "The canonical error type"; - license = lib.licenses.mit; - }) {}; - - "error_1_0_0_0" = callPackage ({ mkDerivation, base, doctest, text }: mkDerivation { pname = "error"; @@ -92126,7 +91918,6 @@ self: { testHaskellDepends = [ base doctest ]; description = "The canonical error type"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "error-analyze" = callPackage @@ -92244,19 +92035,6 @@ self: { }) {}; "error-or" = callPackage - ({ mkDerivation, base, containers, mtl, text }: - mkDerivation { - pname = "error-or"; - version = "0.2.0.0"; - sha256 = "0wpw8ms1rxc8zhdcr078bang10jl2wkd0ji944knzcvspfnx9hib"; - revision = "1"; - editedCabalFile = "16zplgyfdqcqfnrf4w67fl993akn7dpysgsjl8n3w6cw7ki6a2a8"; - libraryHaskellDepends = [ base containers mtl text ]; - description = "Composable, hierarchical errors"; - license = lib.licenses.bsd3; - }) {}; - - "error-or_0_3_0" = callPackage ({ mkDerivation, base, containers, mtl, text }: mkDerivation { pname = "error-or"; @@ -92265,7 +92043,6 @@ self: { libraryHaskellDepends = [ base containers mtl text ]; description = "Composable, hierarchical errors"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "error-or-utils" = callPackage @@ -92599,6 +92376,8 @@ self: { ]; description = "Espial is an open-source, web-based bookmarking server"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "esqueleto" = callPackage @@ -92699,7 +92478,36 @@ self: { ]; description = "General purpose live coding framework"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.turion ]; + broken = true; + }) {}; + + "essence-of-live-coding_0_2_7" = callPackage + ({ mkDerivation, base, containers, foreign-store, HUnit, mmorph + , mtl, QuickCheck, syb, test-framework, test-framework-hunit + , test-framework-quickcheck2, time, transformers, vector-sized + }: + mkDerivation { + pname = "essence-of-live-coding"; + version = "0.2.7"; + sha256 = "1vg10x8radvr8ysqfzf1cngp2hnqy8g139x07pwqwycj9zwwnbl4"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers foreign-store mmorph syb time transformers + vector-sized + ]; + executableHaskellDepends = [ base transformers ]; + testHaskellDepends = [ + base containers HUnit mtl QuickCheck syb test-framework + test-framework-hunit test-framework-quickcheck2 transformers + ]; + description = "General purpose live coding framework"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + maintainers = [ lib.maintainers.turion ]; + broken = true; }) {}; "essence-of-live-coding-PortMidi" = callPackage @@ -92708,14 +92516,15 @@ self: { }: mkDerivation { pname = "essence-of-live-coding-PortMidi"; - version = "0.2.6"; - sha256 = "0n5bivhffrxp8kwhf42r3yf485y3mnxl4r3pzwp2l89h7l380q8z"; + version = "0.2.7"; + sha256 = "1qqswld88yvqa1z8h9rdxqqvjikhkdb67xp2sph6xb231k9710qy"; libraryHaskellDepends = [ base essence-of-live-coding PortMidi transformers ]; description = "General purpose live coding framework - PortMidi backend"; license = lib.licenses.bsd3; badPlatforms = lib.platforms.darwin; + hydraPlatforms = lib.platforms.none; }) {}; "essence-of-live-coding-gloss" = callPackage @@ -92731,6 +92540,24 @@ self: { ]; description = "General purpose live coding framework - Gloss backend"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + maintainers = [ lib.maintainers.turion ]; + }) {}; + + "essence-of-live-coding-gloss_0_2_7" = callPackage + ({ mkDerivation, base, essence-of-live-coding, foreign-store, gloss + , syb, transformers + }: + mkDerivation { + pname = "essence-of-live-coding-gloss"; + version = "0.2.7"; + sha256 = "0iv5wgzfxy1k80dh6c6hrzh4jcjy3ak4l3l004jm3wpfm7fm0lmx"; + libraryHaskellDepends = [ + base essence-of-live-coding foreign-store gloss syb transformers + ]; + description = "General purpose live coding framework - Gloss backend"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.turion ]; }) {}; @@ -92752,7 +92579,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "essence-of-live-coding-gloss-example"; - broken = true; }) {}; "essence-of-live-coding-pulse" = callPackage @@ -92768,6 +92594,24 @@ self: { ]; description = "General purpose live coding framework - pulse backend"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + maintainers = [ lib.maintainers.turion ]; + }) {}; + + "essence-of-live-coding-pulse_0_2_7" = callPackage + ({ mkDerivation, base, essence-of-live-coding, foreign-store + , pulse-simple, transformers + }: + mkDerivation { + pname = "essence-of-live-coding-pulse"; + version = "0.2.7"; + sha256 = "0bmnc7901zgak223kfm29md0w5fd9lfv4dxc8c27cdcrdqnqfc2p"; + libraryHaskellDepends = [ + base essence-of-live-coding foreign-store pulse-simple transformers + ]; + description = "General purpose live coding framework - pulse backend"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.turion ]; }) {}; @@ -92789,7 +92633,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "essence-of-live-coding-pulse-example"; - broken = true; }) {}; "essence-of-live-coding-quickcheck" = callPackage @@ -92806,6 +92649,25 @@ self: { ]; description = "General purpose live coding framework - QuickCheck integration"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + maintainers = [ lib.maintainers.turion ]; + }) {}; + + "essence-of-live-coding-quickcheck_0_2_7" = callPackage + ({ mkDerivation, base, boltzmann-samplers, essence-of-live-coding + , QuickCheck, syb, transformers + }: + mkDerivation { + pname = "essence-of-live-coding-quickcheck"; + version = "0.2.7"; + sha256 = "0jn5bz7xq8jmlkhrrbn5mj3ywh8288gpx43n8fkjzmzdk233kbvp"; + libraryHaskellDepends = [ + base boltzmann-samplers essence-of-live-coding QuickCheck syb + transformers + ]; + description = "General purpose live coding framework - QuickCheck integration"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.turion ]; }) {}; @@ -92813,11 +92675,12 @@ self: { ({ mkDerivation, base, essence-of-live-coding, vivid }: mkDerivation { pname = "essence-of-live-coding-vivid"; - version = "0.2.6"; - sha256 = "1vw4bjxnqd58h5lrw7wqd1w3026skcnz9vrnwmfxcsbyc09bnyvw"; + version = "0.2.7"; + sha256 = "03j5kmp824s8b2x1n8dp86lh7ac8ccxh54dg0sx7v98j9lflbcqq"; libraryHaskellDepends = [ base essence-of-live-coding vivid ]; description = "General purpose live coding framework - vivid backend"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "essence-of-live-coding-warp" = callPackage @@ -92836,6 +92699,28 @@ self: { ]; description = "General purpose live coding framework"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + maintainers = [ lib.maintainers.turion ]; + }) {}; + + "essence-of-live-coding-warp_0_2_7" = callPackage + ({ mkDerivation, base, bytestring, essence-of-live-coding + , http-client, http-types, wai, warp + }: + mkDerivation { + pname = "essence-of-live-coding-warp"; + version = "0.2.7"; + sha256 = "1zykg5qik61xr4ri6d9r04w5rj7wm0wqmnzm6nipwpixal3gdxqa"; + libraryHaskellDepends = [ + base essence-of-live-coding http-types wai warp + ]; + testHaskellDepends = [ + base bytestring essence-of-live-coding http-client + ]; + description = "General purpose live coding framework"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + maintainers = [ lib.maintainers.turion ]; }) {}; "estimator" = callPackage @@ -93196,6 +93081,7 @@ self: { ]; description = "Ethereum Recursive Length Prefix Encoding"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "ety" = callPackage @@ -93359,8 +93245,6 @@ self: { ]; description = "An extensible event framework"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "eve-cli" = callPackage @@ -93379,6 +93263,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "eve-cli-exe"; + broken = true; }) {}; "eved" = callPackage @@ -93522,6 +93407,7 @@ self: { ]; description = "Core module for eventful"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "eventful-dynamodb" = callPackage @@ -93565,6 +93451,7 @@ self: { ]; description = "In-memory implementations for eventful"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "eventful-postgresql" = callPackage @@ -93607,7 +93494,6 @@ self: { description = "Common library for SQL event stores"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "eventful-sqlite" = callPackage @@ -93646,20 +93532,20 @@ self: { ]; description = "Common module used for eventful tests"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "eventlog2html" = callPackage ({ mkDerivation, aeson, array, attoparsec, base, blaze-html , bytestring, containers, file-embed, filepath, ghc-events - , ghc-heap, hashable, hashtables, hvega, mtl, optparse-applicative - , semigroups, statistics-linreg, text, time, trie-simple, vector + , ghc-heap, githash, hashable, hashtables, hvega, mtl + , optparse-applicative, semigroups, statistics-linreg, text, time + , trie-simple, vector }: mkDerivation { pname = "eventlog2html"; - version = "0.9.2"; - sha256 = "0mr916gppp8pgyqdx89zhmcil7hkm7462h6vsq1y4n1qf5hx30jv"; - revision = "3"; - editedCabalFile = "12vbcl7l08a8a8xnjibpsb7va270l5m0avmwdw7ms4qnly7c5z29"; + version = "0.9.3"; + sha256 = "1wgpqrqkk0cvyxmmgkmq04k3d1v91qdqb737xx7k51d3lb909n7l"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -93668,7 +93554,7 @@ self: { mtl optparse-applicative semigroups statistics-linreg text time trie-simple vector ]; - executableHaskellDepends = [ aeson base filepath text ]; + executableHaskellDepends = [ aeson base filepath githash text ]; description = "Visualise an eventlog"; license = lib.licenses.bsd3; mainProgram = "eventlog2html"; @@ -93797,7 +93683,9 @@ self: { ]; description = "Server-Sent Events the UNIX way"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "eventsourced"; + broken = true; }) {}; "eventsourcing" = callPackage @@ -93875,39 +93763,40 @@ self: { }) {}; "eventuo11y" = callPackage - ({ mkDerivation, base, exceptions, primitive, resourcet - , safe-exceptions, transformers, unliftio-core + ({ mkDerivation, base, exceptions, general-allocate, monad-control + , mtl, primitive, transformers, transformers-base, unliftio-core }: mkDerivation { pname = "eventuo11y"; - version = "0.5.0.0"; - sha256 = "19rsw7xs8hy1yl145fgsfd3rddvpxjgxv05kd557hgv35ipkklmz"; + version = "0.6.0.0"; + sha256 = "1zk49cfg2cab5h5xy2bghk643aq6p0zi937linnxgl53c21br1li"; libraryHaskellDepends = [ - base exceptions primitive resourcet safe-exceptions transformers - unliftio-core + base exceptions general-allocate monad-control mtl primitive + transformers transformers-base unliftio-core ]; description = "An event-oriented observability library"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "eventuo11y-batteries" = callPackage ({ mkDerivation, aeson, base, binary, bytestring, case-insensitive - , containers, eventuo11y, eventuo11y-json, http-media, http-types - , monad-control, mtl, network, safe-exceptions, semigroupoids - , servant-client, servant-client-core, text, transformers-base, wai + , containers, eventuo11y, eventuo11y-json, general-allocate + , http-media, http-types, monad-control, mtl, network + , safe-exceptions, semigroupoids, servant-client + , servant-client-core, text, transformers-base, unliftio-core, wai , warp }: mkDerivation { pname = "eventuo11y-batteries"; - version = "0.2.1.1"; - sha256 = "1s3mwr9cnfsn1kh63dq6djwvvj4sx256w47r9s6wsii9ibgqig8v"; + version = "0.3.0.0"; + sha256 = "12agwfk89jxsa2hdy5ghvkjddp2xs58973r4zi5zsf3zzx7nlx56"; libraryHaskellDepends = [ aeson base binary bytestring case-insensitive containers eventuo11y - eventuo11y-json http-media http-types monad-control mtl network - safe-exceptions semigroupoids servant-client servant-client-core - text transformers-base wai warp + eventuo11y-json general-allocate http-media http-types + monad-control mtl network safe-exceptions semigroupoids + servant-client servant-client-core text transformers-base + unliftio-core wai warp ]; description = "Grab bag of eventuo11y-enriched functionality"; license = lib.licenses.asl20; @@ -93915,29 +93804,27 @@ self: { }) {}; "eventuo11y-dsl" = callPackage - ({ mkDerivation, base, template-haskell, th-compat }: + ({ mkDerivation, base, template-haskell }: mkDerivation { pname = "eventuo11y-dsl"; - version = "0.1.0.0"; - sha256 = "0nm0q8p5qbnx56gvpsbzz5vwkx08sn8wcdyb6hli4ihq407ml8qz"; - libraryHaskellDepends = [ base template-haskell th-compat ]; + version = "0.2.0.0"; + sha256 = "0qa5csjkm25278h1vf59aws9am59gyha7zi1yjq7wag1ivhdfa9w"; + libraryHaskellDepends = [ base template-haskell ]; description = "DSL for defining eventuo11y fields and selectors"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "eventuo11y-json" = callPackage ({ mkDerivation, aeson, base, bytestring, eventuo11y - , eventuo11y-dsl, template-haskell, text, th-compat, time, uuid + , eventuo11y-dsl, template-haskell, text, time, uuid }: mkDerivation { pname = "eventuo11y-json"; - version = "0.1.0.0"; - sha256 = "1bl4lqxq38nvwnm6s9w27ja4x571y6lvjvx7amc2i498i3mr5jzq"; + version = "0.2.0.0"; + sha256 = "132dkvsp1p5lj103amsfkn9grc4rx7qgs2nh5506mybykhhhzzg5"; libraryHaskellDepends = [ aeson base bytestring eventuo11y eventuo11y-dsl template-haskell - text th-compat time uuid + text time uuid ]; description = "aeson-based rendering for eventuo11y"; license = lib.licenses.asl20; @@ -94006,8 +93893,6 @@ self: { ]; description = "A GHC plugin to derive instances"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ewe" = callPackage @@ -94029,7 +93914,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "ewe"; - broken = true; }) {}; "ex-pool" = callPackage @@ -94158,19 +94042,19 @@ self: { ({ mkDerivation, base, template-haskell }: mkDerivation { pname = "exception-hierarchy"; - version = "0.1.0.6"; - sha256 = "0dnkfznv21sqb8law2smvrlyz76b49dccd83m6fici972f2v1v4k"; + version = "0.1.0.7"; + sha256 = "14kk0rync05rq2adx5lk59y56h97s0yv7mqfn2grhhwqb10maqj0"; libraryHaskellDepends = [ base template-haskell ]; description = "Exception type hierarchy with TemplateHaskell"; license = lib.licenses.bsd3; }) {}; - "exception-hierarchy_0_1_0_7" = callPackage + "exception-hierarchy_0_1_0_8" = callPackage ({ mkDerivation, base, template-haskell }: mkDerivation { pname = "exception-hierarchy"; - version = "0.1.0.7"; - sha256 = "14kk0rync05rq2adx5lk59y56h97s0yv7mqfn2grhhwqb10maqj0"; + version = "0.1.0.8"; + sha256 = "17wx40kic0gw5lbz1nr094ps612i0j0pbf0wfj4kgzsl6cj80hih"; libraryHaskellDepends = [ base template-haskell ]; description = "Exception type hierarchy with TemplateHaskell"; license = lib.licenses.bsd3; @@ -94202,6 +94086,7 @@ self: { description = "Exception monad transformer instances for monads-fd classes"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "exception-monads-tf" = callPackage @@ -94260,6 +94145,8 @@ self: { libraryHaskellDepends = [ base template-haskell ]; description = "DerivingVia for your hierarchical exceptions"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "exceptional" = callPackage @@ -94292,17 +94179,15 @@ self: { broken = true; }) {}; - "exceptions_0_10_5" = callPackage + "exceptions_0_10_7" = callPackage ({ mkDerivation, base, mtl, QuickCheck, stm, template-haskell , test-framework, test-framework-hunit, test-framework-quickcheck2 , transformers }: mkDerivation { pname = "exceptions"; - version = "0.10.5"; - sha256 = "12xz2x16pv1a6csz64bpl22v40vykjwvdaiz39i8f8nkwasc1qv6"; - revision = "1"; - editedCabalFile = "0ix0ihq1wm9k24r7pisdpvnh5fysy03d0rxfyc6qx9m2bflk9imj"; + version = "0.10.7"; + sha256 = "0jb0ah5k2mb4clhb34c59f615vzl54lhx3hf6njqsgdmr3jashls"; libraryHaskellDepends = [ base mtl stm template-haskell transformers ]; @@ -94315,6 +94200,25 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "exceptiot" = callPackage + ({ mkDerivation, base, exceptions, hspec, hspec-discover, mtl + , unliftio, unliftio-core + }: + mkDerivation { + pname = "exceptiot"; + version = "0.0.1.0"; + sha256 = "1ss78y1has7yy3ypm29s3k345h8nmxgaqw63r4ahbn0icmi52lys"; + libraryHaskellDepends = [ + base exceptions mtl unliftio unliftio-core + ]; + testHaskellDepends = [ + base exceptions hspec mtl unliftio unliftio-core + ]; + testToolDepends = [ hspec-discover ]; + description = "ExceptT, but uses IO instead of Either"; + license = lib.licenses.bsd3; + }) {}; + "exchangerates" = callPackage ({ mkDerivation, aeson, base, containers, directory, genvalidity , genvalidity-containers, genvalidity-hspec @@ -94534,8 +94438,8 @@ self: { }: mkDerivation { pname = "exiftool"; - version = "0.2.0.1"; - sha256 = "1s59pbwih18izh1iy9y0i56ysh2246dkdv98nan72zp2br5wz7g3"; + version = "0.2.0.2"; + sha256 = "0l9484l07v6hqv675nwwxnm9pck3cz6q3f684vcy7152gyp3z3sq"; libraryHaskellDepends = [ aeson base base64 bytestring hashable process scientific temporary text unordered-containers vector witch @@ -94829,7 +94733,6 @@ self: { description = "Customizable Quasiquote Interpolation"; license = "BSD-2-Clause-Patent"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "exotic-list-monads" = callPackage @@ -94883,6 +94786,8 @@ self: { libraryHaskellDepends = [ base ]; description = "floating point with extended exponent range"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "exp-pairs" = callPackage @@ -95179,16 +95084,14 @@ self: { }: mkDerivation { pname = "exploring-interpreters"; - version = "1.3.0.0"; - sha256 = "12a2z2z5c8kaqn7mks28ppazmkfvxn9lah6argmjqsd5ahwsxazs"; + version = "1.4.0.0"; + sha256 = "15dadwf6lpcppc1zcv5mwrfsgffjjwbsprasf0fw9prnyx1srw3v"; libraryHaskellDepends = [ aeson attoparsec base bytestring containers exceptions fgl haskeline http-types mtl network scientific text transformers ]; description = "A generic exploring interpreter for exploratory programming"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "exposed-containers" = callPackage @@ -95459,6 +95362,7 @@ self: { description = "Sums/products/lists/trees which can be extended in other modules"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "extensible-effects" = callPackage @@ -95622,6 +95526,7 @@ self: { description = "Sort large arrays on your hard drive. Kind of like the unix util sort."; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "extra" = callPackage @@ -96421,6 +96326,8 @@ self: { ]; description = "Solve classical planning problems (STRIPS/SAS+) using Haskell & Fast Downward"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fast-logger" = callPackage @@ -96529,6 +96436,8 @@ self: { libraryHaskellDepends = [ base bytestring tagsoup text ]; description = "Fast parser for tagsoup package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fasta" = callPackage @@ -96591,6 +96500,7 @@ self: { librarySystemDepends = [ fcgi ]; description = "A Haskell library for writing FastCGI programs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) fcgi;}; "fastedit" = callPackage @@ -96672,6 +96582,7 @@ self: { description = "A highly experimental Fastly API client"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fastmemo" = callPackage @@ -96710,7 +96621,6 @@ self: { benchmarkHaskellDepends = [ base bytestring criterion ]; description = "A fast, but bare bones, bytestring parser combinators library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "fastpbkdf2" = callPackage @@ -96812,6 +96722,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "fay"; + broken = true; }) {}; "fay-base" = callPackage @@ -97040,24 +96951,23 @@ self: { ({ mkDerivation, aeson, async, base, bodhi, bugzilla-redhat , bytestring, config-ini, copr-api, directory, email-validate , extra, fedora-dists, filepath, http-conduit, http-directory - , http-query, koji, network-uri, optparse-applicative, pagure - , pretty-terminal, process, rpm-nvr, rpmbuild-order, simple-cmd - , simple-cmd-args, text, time, typed-process, unix - , unordered-containers, utf8-string, xdg-basedir + , http-query, koji, network-uri, pagure, pretty-terminal, process + , rpm-nvr, rpmbuild-order, simple-cmd, simple-cmd-args, text, time + , typed-process, unix, utf8-string, xdg-basedir }: mkDerivation { pname = "fbrnch"; - version = "1.1.2"; - sha256 = "1ybd98gbck5k433hzli7c5qcgxr5rbmy1ydi6hd7wrkhcrr6mndf"; + version = "1.2.1"; + sha256 = "1kf3sc5lcg9w62q18fzf3pgm0rhiyr290wad6l6932yjijxamaj2"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ aeson async base bodhi bugzilla-redhat bytestring config-ini copr-api directory email-validate extra fedora-dists filepath - http-conduit http-directory http-query koji network-uri - optparse-applicative pagure pretty-terminal process rpm-nvr - rpmbuild-order simple-cmd simple-cmd-args text time typed-process - unix unordered-containers utf8-string xdg-basedir + http-conduit http-directory http-query koji network-uri pagure + pretty-terminal process rpm-nvr rpmbuild-order simple-cmd + simple-cmd-args text time typed-process unix utf8-string + xdg-basedir ]; description = "Fedora packager tool to build package branches"; license = lib.licenses.gpl2Only; @@ -97179,6 +97089,8 @@ self: { ]; description = "Type-level version of algebraic-graphs"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fcf-vinyl" = callPackage @@ -97219,7 +97131,6 @@ self: { description = "Server-Side Integration for FCKeditor"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "fclabels" = callPackage @@ -97333,6 +97244,8 @@ self: { libraryHaskellDepends = [ base containers microlens-platform mtl ]; testHaskellDepends = [ base containers microlens-platform mtl ]; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "feature-flags" = callPackage @@ -97421,21 +97334,6 @@ self: { }) {}; "fedora-dists" = callPackage - ({ mkDerivation, aeson, base, bytestring, cached-json-file, pdc - , text, time - }: - mkDerivation { - pname = "fedora-dists"; - version = "2.0.0"; - sha256 = "1igw3rl99g48c46qzclj15896c97qd8g02pdscjwm0zid83pbimk"; - libraryHaskellDepends = [ - aeson base bytestring cached-json-file pdc text time - ]; - description = "Library for Fedora distribution versions"; - license = lib.licenses.gpl3Only; - }) {}; - - "fedora-dists_2_1_1" = callPackage ({ mkDerivation, aeson, base, cached-json-file, pdc, text }: mkDerivation { pname = "fedora-dists"; @@ -97444,7 +97342,6 @@ self: { libraryHaskellDepends = [ aeson base cached-json-file pdc text ]; description = "Library for Fedora distribution versions"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; }) {}; "fedora-haskell-tools" = callPackage @@ -97714,23 +97611,24 @@ self: { }) {}; "feedback" = callPackage - ({ mkDerivation, autodocodec, autodocodec-yaml, base, conduit - , containers, envparse, fsnotify, optparse-applicative, path - , path-io, pretty-show, safe-coloured-text + ({ mkDerivation, autodocodec, autodocodec-yaml, base, bytestring + , conduit, containers, envparse, fsnotify, optparse-applicative + , path, path-io, pretty-show, safe-coloured-text , safe-coloured-text-layout, safe-coloured-text-terminfo, text - , time, typed-process, unliftio, yaml + , time, typed-process, unix, unliftio, yaml }: mkDerivation { pname = "feedback"; - version = "0.0.0.0"; - sha256 = "1y4p38cd0cqg4r43y2p0n2i99q83vnhm7gswx0j34p58isrbad4x"; + version = "0.1.0.1"; + sha256 = "18934n0fwz3q7mgfzc0phwxfng3qakf5hw14iyhal57ks7gm7j2y"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - autodocodec autodocodec-yaml base conduit containers envparse - fsnotify optparse-applicative path path-io pretty-show + autodocodec autodocodec-yaml base bytestring conduit containers + envparse fsnotify optparse-applicative path path-io pretty-show safe-coloured-text safe-coloured-text-layout - safe-coloured-text-terminfo text time typed-process unliftio yaml + safe-coloured-text-terminfo text time typed-process unix unliftio + yaml ]; executableHaskellDepends = [ base ]; description = "Declarative feedback loop manager"; @@ -97966,6 +97864,7 @@ self: { description = "A functional embedded language for DSP and parallelism"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "feldspar-signal" = callPackage @@ -98133,37 +98032,37 @@ self: { }) {}; "fficxx" = callPackage - ({ mkDerivation, aeson, aeson-pretty, base, bytestring, Cabal - , containers, data-default, directory, either, errors + ({ mkDerivation, aeson, aeson-pretty, array, base, bytestring + , Cabal, containers, data-default, directory, dotgen, errors , fficxx-runtime, filepath, hashable, haskell-src-exts, lens, mtl , process, pureMD5, split, template, template-haskell, text , transformers, unordered-containers }: mkDerivation { pname = "fficxx"; - version = "0.6"; - sha256 = "0ky5zgdmw03wxngnpyai29ydm28n3bndznqxnmq45vadzhkz2ncz"; + version = "0.7.0.0"; + sha256 = "11ppih6vxvw9a5wmb7cni1jyprzbas1xy6i2zzqqxas3ik9i9sin"; libraryHaskellDepends = [ - aeson aeson-pretty base bytestring Cabal containers data-default - directory either errors fficxx-runtime filepath hashable - haskell-src-exts lens mtl process pureMD5 split template + aeson aeson-pretty array base bytestring Cabal containers + data-default directory dotgen errors fficxx-runtime filepath + hashable haskell-src-exts lens mtl process pureMD5 split template template-haskell text transformers unordered-containers ]; description = "Automatic C++ binding generation"; - license = lib.licenses.bsd3; + license = lib.licenses.bsd2; }) {}; "fficxx-runtime" = callPackage ({ mkDerivation, base, bytestring, hashable, template-haskell }: mkDerivation { pname = "fficxx-runtime"; - version = "0.6"; - sha256 = "12imwghgia5bp4j6gcbww6ikk43q4ysf6fymk54m645bl4agwqrb"; + version = "0.7.0.0"; + sha256 = "1igchjkbmdl3skqnf5aqa4zv1bz5kk1wvgrxwvhq2xdshyflvzkk"; libraryHaskellDepends = [ base bytestring hashable template-haskell ]; description = "Runtime for fficxx-generated library"; - license = lib.licenses.bsd3; + license = lib.licenses.bsd2; }) {}; "ffmpeg-light" = callPackage @@ -98426,6 +98325,7 @@ self: { description = "First-class record field combinators with infix record field syntax"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fields-json" = callPackage @@ -98559,10 +98459,8 @@ self: { ({ mkDerivation, base, bytestring, filepath, unix }: mkDerivation { pname = "file-io"; - version = "0.1.0.0"; - sha256 = "04h83zz3pgkd7q4p51rndc2wr3a2rk18y9mxahzsvd6hq8jp77gs"; - revision = "1"; - editedCabalFile = "0ahdk69vvydsjlmk9363jkcs9zy589m0sxpn1bqxysvm29lac9gs"; + version = "0.1.0.1"; + sha256 = "1kxr2cdv3zmml7v3gmk2zrd2kwvph46fzv3r2ia5brq5qvm2s544"; libraryHaskellDepends = [ base bytestring filepath unix ]; description = "Basic file IO operations via 'OsPath'"; license = lib.licenses.bsd3; @@ -98755,21 +98653,6 @@ self: { }) {}; "filepath-bytestring" = callPackage - ({ mkDerivation, base, bytestring, criterion, filepath, QuickCheck - , unix - }: - mkDerivation { - pname = "filepath-bytestring"; - version = "1.4.2.1.9"; - sha256 = "1djbx4mxkzmbi6l44r4ag482r71hwd5s22fj2myz6c128lfrvlk7"; - libraryHaskellDepends = [ base bytestring unix ]; - testHaskellDepends = [ base bytestring filepath QuickCheck ]; - benchmarkHaskellDepends = [ base criterion filepath ]; - description = "Library for manipulating RawFilePaths in a cross platform way"; - license = lib.licenses.bsd3; - }) {}; - - "filepath-bytestring_1_4_2_1_12" = callPackage ({ mkDerivation, base, bytestring, criterion, filepath, QuickCheck , unix }: @@ -98782,7 +98665,6 @@ self: { benchmarkHaskellDepends = [ base criterion filepath ]; description = "Library for manipulating RawFilePaths in a cross platform way"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "filepath-crypto" = callPackage @@ -99235,8 +99117,8 @@ self: { }: mkDerivation { pname = "finitary"; - version = "2.1.1.0"; - sha256 = "1ip1l809d7wnhiyz522g34kzsvv2r9hz1l065jqlrwf1pnhgsv0c"; + version = "2.1.1.1"; + sha256 = "006zyb0lna9w4n1yqm2c7k2lpk6aidj4cmf5kx8pcl4r9vkwafgk"; libraryHaskellDepends = [ base bitvec finite-typelits ghc-typelits-knownnat ghc-typelits-natnormalise primitive template-haskell @@ -99250,7 +99132,6 @@ self: { description = "A better, more type-safe Enum"; license = lib.licenses.gpl3Plus; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "finitary-derive" = callPackage @@ -99750,6 +99631,25 @@ self: { mainProgram = "fix-whitespace"; }) {}; + "fix-whitespace_0_0_11" = callPackage + ({ mkDerivation, base, directory, extra, filepath, filepattern + , text, yaml + }: + mkDerivation { + pname = "fix-whitespace"; + version = "0.0.11"; + sha256 = "0q36vr3pfk1x14hl86g4g557299ih0510j7cf37h8n5nv8bs8gq2"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base directory extra filepath filepattern text yaml + ]; + description = "Fixes whitespace issues"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + mainProgram = "fix-whitespace"; + }) {}; + "fixed" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -99838,6 +99738,7 @@ self: { description = "Fixed Precision Arithmetic"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fixed-storable-array" = callPackage @@ -100325,35 +100226,6 @@ self: { }) {}; "flat" = callPackage - ({ mkDerivation, array, base, bytestring, containers, deepseq - , dlist, filepath, ghc-prim, hashable, mono-traversable, pretty - , primitive, QuickCheck, quickcheck-instances, quickcheck-text - , semigroups, tasty, tasty-hunit, tasty-quickcheck, text - , unordered-containers, vector - }: - mkDerivation { - pname = "flat"; - version = "0.4.4"; - sha256 = "02i4nzzkmm11sp312k2d3d3g0gm2gzhh3ibczxxscl986svam7p3"; - revision = "1"; - editedCabalFile = "1f9vlfnkr20nh5nayj18wvwh061w0byrd88j01k9gnrmb7qykpf6"; - libraryHaskellDepends = [ - array base bytestring containers deepseq dlist ghc-prim hashable - mono-traversable pretty primitive semigroups text - unordered-containers vector - ]; - testHaskellDepends = [ - array base bytestring containers deepseq dlist filepath ghc-prim - mono-traversable pretty QuickCheck quickcheck-instances - quickcheck-text tasty tasty-hunit tasty-quickcheck text - unordered-containers vector - ]; - description = "Principled and efficient bit-oriented binary serialization"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.sternenseemann ]; - }) {}; - - "flat_0_6" = callPackage ({ mkDerivation, array, base, bytestring, containers, deepseq , dlist, filepath, ghc-prim, hashable, list-t, mono-traversable , pretty, primitive, QuickCheck, quickcheck-text, tasty @@ -100377,7 +100249,6 @@ self: { ]; description = "Principled and efficient bit-oriented binary serialization"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.sternenseemann ]; }) {}; @@ -100767,11 +100638,11 @@ self: { pname = "float128"; version = "0.1"; sha256 = "0f4nrj5qy6j6d9ll22zjkbgvw2rx0x2w7nllhl929zdbmhxrjk73"; + revision = "1"; + editedCabalFile = "0s13mg9gagmvvqdisdm9r8nps6bavw4va18bsq93q080znwg2dw3"; libraryHaskellDepends = [ base integer-gmp ]; description = "FFI bindings for C _Float128"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "floating-bits" = callPackage @@ -100815,6 +100686,8 @@ self: { ]; description = "Wrapper for flock(2)"; license = "unknown"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "floskell" = callPackage @@ -100826,8 +100699,8 @@ self: { }: mkDerivation { pname = "floskell"; - version = "0.10.6"; - sha256 = "0r7djm85lc7qmcfc6fi8kdshg22zc6xhwqg09ipimdbwhlwlpv7f"; + version = "0.10.7"; + sha256 = "0v52x4h52ack88f98n9yrnybmlmp2fqpsvsn9lbjq2krl2p1n2az"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -100955,6 +100828,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "flowdock"; + broken = true; }) {}; "flowdock-rest" = callPackage @@ -101531,17 +101405,18 @@ self: { }) {}; "fold-debounce" = callPackage - ({ mkDerivation, base, data-default-class, hspec, stm, stm-delay - , time + ({ mkDerivation, base, data-default-class, hspec, hspec-discover + , stm, stm-delay, time }: mkDerivation { pname = "fold-debounce"; - version = "0.2.0.9"; - sha256 = "032vk4bpmsd7ix00kpfb2vnabivg9vkkfy3nbazdgm8x01jix4wq"; + version = "0.2.0.10"; + sha256 = "0ql0vi0l19l8559ppb9j0i5w90cgk2l7ipf8laj30xx6xz3yrrji"; libraryHaskellDepends = [ base data-default-class stm stm-delay time ]; testHaskellDepends = [ base hspec stm time ]; + testToolDepends = [ hspec-discover ]; description = "Fold multiple events that happen in a given period of time"; license = lib.licenses.bsd3; }) {}; @@ -101552,8 +101427,8 @@ self: { }: mkDerivation { pname = "fold-debounce-conduit"; - version = "0.2.0.6"; - sha256 = "0xy6vr2hbw41fcs3rlk7wyxqrkqd3nfw5rcr1aiij86zaaifpry5"; + version = "0.2.0.7"; + sha256 = "02a3kxk4b3725h4dbnfvc1va4h7l4mxg3aaf3jacq9vmn1zwl4n5"; libraryHaskellDepends = [ base conduit fold-debounce resourcet stm transformers transformers-base @@ -101597,10 +101472,8 @@ self: { }: mkDerivation { pname = "foldl"; - version = "1.4.12"; - sha256 = "0zf4yljh3s2ddxa7dhzdglmylj14kfldhkclc44g37zvjq6kcnag"; - revision = "5"; - editedCabalFile = "1b97k85zryid7x2ygi92ilv480ahfjn5yf1f4blllwyxn7zgvjv4"; + version = "1.4.13"; + sha256 = "14vlhgf40qmwkznwza37z4www3q1v5acsx4nw5vmg25wdnc8ibfw"; libraryHaskellDepends = [ base bytestring comonad containers contravariant hashable primitive profunctors random semigroupoids text transformers @@ -101894,6 +101767,30 @@ self: { broken = true; }) {}; + "fontconfig-pure" = callPackage + ({ mkDerivation, base, containers, css-syntax, fontconfig + , freetype2, hashable, hspec, linear, QuickCheck, scientific + , stylist-traits, text + }: + mkDerivation { + pname = "fontconfig-pure"; + version = "0.1.0.0"; + sha256 = "0rnx9s5kj5lr70gp4454qy3h4lfndf9f976h331jp0f4y47c2d42"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers css-syntax freetype2 hashable linear scientific + stylist-traits text + ]; + libraryPkgconfigDepends = [ fontconfig ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base hspec QuickCheck ]; + description = "Pure-functional language bindings to FontConfig"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "fontconfig-pure"; + }) {inherit (pkgs) fontconfig;}; + "foo" = callPackage ({ mkDerivation, base, containers, GLUT, haskell98, OpenGL }: mkDerivation { @@ -101974,8 +101871,8 @@ self: { pname = "force-layout"; version = "0.4.0.6"; sha256 = "17956k3mab2xhrmfy7fj5gh08h43yjlsryi5acjhnkmin5arhwpp"; - revision = "9"; - editedCabalFile = "0271sh8py8lm6amwxyr4dic20cji5hq1iixmikq0kmijg1095wkp"; + revision = "10"; + editedCabalFile = "1mcs51d1a3klzy938wq0gcbx7ln49g940zhajmflxq6imy5h5kwa"; libraryHaskellDepends = [ base containers data-default-class lens linear ]; @@ -102018,8 +101915,8 @@ self: { }: mkDerivation { pname = "foreign"; - version = "0.1.2.0"; - sha256 = "0pmwf96miai50q7vbwjdm5rz2cljpmp115hp3blv2l596mdjrvc0"; + version = "0.2.0.1"; + sha256 = "0jdp0firbgjsgfzwsxw2yr9lj08bibhngcfwamj0sh3asrb6ryws"; libraryHaskellDepends = [ base bytestring ghc-prim primitive primitive-unlifted ]; @@ -102205,6 +102102,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "formal"; + broken = true; }) {}; "format" = callPackage @@ -102307,6 +102205,25 @@ self: { license = lib.licenses.bsd3; }) {}; + "formatting_7_2_0" = callPackage + ({ mkDerivation, base, clock, criterion, double-conversion, hspec + , old-locale, QuickCheck, scientific, text, time, transformers + }: + mkDerivation { + pname = "formatting"; + version = "7.2.0"; + sha256 = "0vbaf1p2grz8irh92d4v44f1np5kywjdjvrfygjyf57ng8bihyy0"; + libraryHaskellDepends = [ + base clock double-conversion old-locale scientific text time + transformers + ]; + testHaskellDepends = [ base hspec scientific text time ]; + benchmarkHaskellDepends = [ base criterion QuickCheck text ]; + description = "Combinator-based type-safe formatting (like printf() or FORMAT)"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "forml" = callPackage ({ mkDerivation, ansi-terminal, base, bytestring, cereal , containers, directory, file-embed, ghc-prim, GraphSCC, hslogger @@ -102331,6 +102248,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "forml"; + broken = true; }) {}; "formlets" = callPackage @@ -102447,38 +102365,6 @@ self: { }) {}; "fortran-src" = callPackage - ({ mkDerivation, alex, array, base, binary, bytestring, containers - , deepseq, directory, either, fgl, filepath, GenericPretty, happy - , hspec, hspec-discover, mtl, pretty, QuickCheck, temporary, text - , uniplate - }: - mkDerivation { - pname = "fortran-src"; - version = "0.9.0"; - sha256 = "0x2dkzqvc1al4zshdjc2iypi5bl2vkrvrvidmw7099jjspp6iw1c"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - array base binary bytestring containers deepseq directory either - fgl filepath GenericPretty mtl pretty temporary text uniplate - ]; - libraryToolDepends = [ alex happy ]; - executableHaskellDepends = [ - array base binary bytestring containers deepseq directory either - fgl filepath GenericPretty mtl pretty temporary text uniplate - ]; - testHaskellDepends = [ - array base binary bytestring containers deepseq directory either - fgl filepath GenericPretty hspec mtl pretty QuickCheck temporary - text uniplate - ]; - testToolDepends = [ hspec-discover ]; - description = "Parsers and analyses for Fortran standards 66, 77, 90, 95 and 2003 (partial)"; - license = lib.licenses.asl20; - mainProgram = "fortran-src"; - }) {}; - - "fortran-src_0_12_0" = callPackage ({ mkDerivation, alex, array, base, binary, bytestring, containers , deepseq, directory, either, fgl, filepath, GenericPretty, happy , hspec, hspec-discover, mtl, pretty, QuickCheck, singletons @@ -102510,7 +102396,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Parsers and analyses for Fortran standards 66, 77, 90, 95 and 2003 (partial)"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; mainProgram = "fortran-src"; }) {}; @@ -102751,40 +102636,6 @@ self: { }) {}; "fourmolu" = callPackage - ({ mkDerivation, aeson, ansi-terminal, base, bytestring, Cabal - , containers, Diff, directory, dlist, exceptions, filepath - , ghc-lib-parser, gitrev, hspec, hspec-discover, HsYAML - , HsYAML-aeson, mtl, optparse-applicative, path, path-io, syb - , temporary, text - }: - mkDerivation { - pname = "fourmolu"; - version = "0.4.0.0"; - sha256 = "1mq0h6nsl7ssfwh6zqhyja7w212vn8msmlm5iwwimca279hzwywb"; - revision = "1"; - editedCabalFile = "03bwhqj547brmgk191gy3k9xayi6fqqk2f5sbz3ail1bk7b73xnq"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson ansi-terminal base bytestring Cabal containers Diff directory - dlist exceptions filepath ghc-lib-parser HsYAML HsYAML-aeson mtl - syb text - ]; - executableHaskellDepends = [ - base directory filepath ghc-lib-parser gitrev optparse-applicative - text - ]; - testHaskellDepends = [ - base containers directory filepath hspec path path-io temporary - text - ]; - testToolDepends = [ hspec-discover ]; - description = "A formatter for Haskell source code"; - license = lib.licenses.bsd3; - mainProgram = "fourmolu"; - }) {}; - - "fourmolu_0_9_0_0" = callPackage ({ mkDerivation, aeson, ansi-terminal, array, base, bytestring , Cabal, containers, Diff, directory, dlist, exceptions, filepath , ghc-lib-parser, gitrev, hspec, hspec-discover, hspec-megaparsec @@ -102796,6 +102647,8 @@ self: { pname = "fourmolu"; version = "0.9.0.0"; sha256 = "0zq9fv5yszm7icirgwj8g4lhg21lg87fhz56sssjnfikzmkwyh1l"; + revision = "1"; + editedCabalFile = "0hbjn9qzbr7a9571isi4i651gdi60qqa40idpfg87qlg2sd61485"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -102815,6 +102668,40 @@ self: { testToolDepends = [ hspec-discover ]; description = "A formatter for Haskell source code"; license = lib.licenses.bsd3; + mainProgram = "fourmolu"; + }) {}; + + "fourmolu_0_10_1_0" = callPackage + ({ mkDerivation, aeson, ansi-terminal, array, base, bytestring + , Cabal-syntax, containers, Diff, directory, dlist, exceptions + , filepath, ghc-lib-parser, gitrev, hspec, hspec-discover + , hspec-megaparsec, megaparsec, MemoTrie, mtl, optparse-applicative + , path, path-io, pretty, process, QuickCheck, syb, template-haskell + , temporary, text, th-lift-instances, yaml + }: + mkDerivation { + pname = "fourmolu"; + version = "0.10.1.0"; + sha256 = "0gkzd2wf8hji5j0pxjv7l43m405zwsvppj7hax69j86346mb8hp4"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson ansi-terminal array base bytestring Cabal-syntax containers + Diff directory dlist exceptions filepath ghc-lib-parser megaparsec + MemoTrie mtl syb template-haskell text th-lift-instances yaml + ]; + executableHaskellDepends = [ + base containers directory filepath ghc-lib-parser gitrev + optparse-applicative text yaml + ]; + testHaskellDepends = [ + base containers Diff directory filepath ghc-lib-parser hspec + hspec-megaparsec megaparsec path path-io pretty process QuickCheck + temporary text + ]; + testToolDepends = [ hspec-discover ]; + description = "A formatter for Haskell source code"; + license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "fourmolu"; }) {}; @@ -102890,6 +102777,8 @@ self: { ]; description = "Format-preserving encryption"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fpipe" = callPackage @@ -103180,41 +103069,86 @@ self: { }) {}; "freckle-app" = callPackage - ({ mkDerivation, aeson, aws-xray-client-persistent - , aws-xray-client-wai, base, Blammo, bugsnag, bytestring - , case-insensitive, conduit, containers, datadog, doctest, dotenv - , ekg-core, envparse, errors, exceptions, extra, filepath, Glob + ({ mkDerivation, aeson, base, Blammo, bugsnag, bytestring + , case-insensitive, conduit, containers, datadog, directory, dlist + , doctest, ekg-core, envparse, errors, exceptions, filepath, Glob , hashable, hspec, hspec-core, hspec-expectations-lifted , hspec-junit-formatter, http-client, http-conduit , http-link-header, http-types, immortal, lens, lens-aeson - , memcache, monad-control, MonadRandom, mtl, network-uri - , path-pieces, persistent, persistent-postgresql, postgresql-simple - , primitive, QuickCheck, resource-pool, retry, safe, scientist - , semigroupoids, template-haskell, text, time, transformers - , transformers-base, typed-process, unliftio, unliftio-core - , unordered-containers, vector, wai, wai-extra, yaml, yesod-core + , load-env, memcache, monad-control, monad-logger, MonadRandom, mtl + , network-uri, persistent, persistent-postgresql, postgresql-simple + , primitive, process, resource-pool, retry, safe, scientist + , semigroupoids, template-haskell, temporary, text, time + , transformers, transformers-base, typed-process, unliftio + , unliftio-core, unordered-containers, vector, wai, wai-extra, yaml + , yesod-core }: mkDerivation { pname = "freckle-app"; - version = "1.7.0.0"; - sha256 = "1dndz28fnlwkyskxh2b3afi2imf0ax5sxvqgbd6jl4f06lmk7i5p"; + version = "1.3.0.0"; + sha256 = "1h2ckdjq4h7qv7r5dm28gbs5ja125wi2inzjg3436css9qn1s7v9"; + libraryHaskellDepends = [ + aeson base Blammo bugsnag bytestring case-insensitive conduit + containers datadog dlist doctest ekg-core envparse errors + exceptions filepath Glob hashable hspec hspec-core + hspec-expectations-lifted hspec-junit-formatter http-client + http-conduit http-link-header http-types immortal lens load-env + memcache monad-control monad-logger MonadRandom mtl network-uri + persistent persistent-postgresql postgresql-simple primitive + resource-pool retry safe scientist semigroupoids template-haskell + text time transformers transformers-base typed-process unliftio + unliftio-core unordered-containers vector wai wai-extra yaml + yesod-core + ]; + testHaskellDepends = [ + aeson base bytestring directory errors hspec http-types lens + lens-aeson memcache mtl postgresql-simple process temporary text + time wai wai-extra + ]; + description = "Haskell application toolkit used at Freckle"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + + "freckle-app_1_8_1_0" = callPackage + ({ mkDerivation, aeson, aws-xray-client-persistent + , aws-xray-client-wai, base, Blammo, bugsnag, bytestring + , case-insensitive, cassava, conduit, conduit-extra, containers + , datadog, doctest, dotenv, ekg-core, envparse, errors, exceptions + , extra, filepath, Glob, hashable, hspec, hspec-core + , hspec-expectations-lifted, hspec-junit-formatter, http-client + , http-conduit, http-link-header, http-types, immortal, lens + , lens-aeson, memcache, monad-control, monad-validate, MonadRandom + , mtl, network-uri, nonempty-containers, path-pieces, persistent + , persistent-postgresql, postgresql-simple, primitive, QuickCheck + , resource-pool, retry, safe, scientist, semigroupoids + , template-haskell, text, time, transformers, transformers-base + , typed-process, unliftio, unliftio-core, unordered-containers + , vector, wai, wai-extra, yaml, yesod-core + }: + mkDerivation { + pname = "freckle-app"; + version = "1.8.1.0"; + sha256 = "14v8km2dd74alanz877yly1p6dnai941g793jxgdgfs9hhhflw2m"; libraryHaskellDepends = [ aeson aws-xray-client-persistent aws-xray-client-wai base Blammo - bugsnag bytestring case-insensitive conduit containers datadog - doctest dotenv ekg-core envparse errors exceptions extra filepath - Glob hashable hspec hspec-core hspec-expectations-lifted - hspec-junit-formatter http-client http-conduit http-link-header - http-types immortal lens memcache monad-control MonadRandom mtl - network-uri path-pieces persistent persistent-postgresql + bugsnag bytestring case-insensitive cassava conduit conduit-extra + containers datadog doctest dotenv ekg-core envparse errors + exceptions extra filepath Glob hashable hspec hspec-core + hspec-expectations-lifted hspec-junit-formatter http-client + http-conduit http-link-header http-types immortal lens memcache + monad-control monad-validate MonadRandom mtl network-uri + nonempty-containers path-pieces persistent persistent-postgresql postgresql-simple primitive resource-pool retry safe scientist semigroupoids template-haskell text time transformers transformers-base typed-process unliftio unliftio-core unordered-containers vector wai wai-extra yaml yesod-core ]; testHaskellDepends = [ - aeson base Blammo bugsnag bytestring errors hspec http-types lens - lens-aeson memcache postgresql-simple QuickCheck unliftio wai - wai-extra + aeson base Blammo bugsnag bytestring cassava conduit errors hspec + http-types lens lens-aeson memcache monad-validate + nonempty-containers postgresql-simple QuickCheck unliftio vector + wai wai-extra ]; description = "Haskell application toolkit used at Freckle"; license = lib.licenses.mit; @@ -103249,10 +103183,8 @@ self: { }: mkDerivation { pname = "free"; - version = "5.1.9"; - sha256 = "1vlzis9sqxh7xrmh3habbgiw3skkhkn710bhqb6fnl45804i6x9f"; - revision = "1"; - editedCabalFile = "133nycxnzy7sgp2vib8hpp2jgzm8pxp31ljf7b4v91jn1gqg3kpl"; + version = "5.1.10"; + sha256 = "0whff0r0nvii5l9z9crw7v0rj0wwblwbnfp99515siyxjkzs9phj"; libraryHaskellDepends = [ base comonad containers distributive exceptions indexed-traversable mtl profunctors semigroupoids template-haskell th-abstraction @@ -103353,6 +103285,7 @@ self: { ]; description = "Free functors, adjoint to functors that forget class constraints"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "free-game" = callPackage @@ -103415,15 +103348,13 @@ self: { }) {}; "free-theorems" = callPackage - ({ mkDerivation, base, containers, haskell-src, haskell-src-exts - , mtl, pretty, syb - }: + ({ mkDerivation, base, containers, haskell-src, mtl, pretty, syb }: mkDerivation { pname = "free-theorems"; - version = "0.3.2.0"; - sha256 = "1r0qz8h8fjb9akkhd3impr30gd0s5ky51dj667x0pf155b4lvx2w"; + version = "0.3.2.1"; + sha256 = "0skifd09ccbr950wjm9z9l0adzl9yqrqs73xlhcx24xsy16gn2h8"; libraryHaskellDepends = [ - base containers haskell-src haskell-src-exts mtl pretty syb + base containers haskell-src mtl pretty syb ]; description = "Automatic generation of free theorems"; license = lib.licenses.publicDomain; @@ -103869,6 +103800,7 @@ self: { description = "Single line text rendering for OpenGL ES"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "freetype2" = callPackage @@ -103963,6 +103895,8 @@ self: { ]; description = "high-powered optics in a small package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fresnel-fused-effects" = callPackage @@ -103974,6 +103908,7 @@ self: { libraryHaskellDepends = [ base fresnel fused-effects ]; description = "fresnel/fused-effects integration"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "friday" = callPackage @@ -104707,10 +104642,8 @@ self: { }: mkDerivation { pname = "full-text-search"; - version = "0.2.1.4"; - sha256 = "1qbfklpyxdf5d4d5s1ka9s5a43y892387b0lyjsx9fq3g6d2vck7"; - revision = "1"; - editedCabalFile = "0dma678xflfplrld48aca1p9kjnnwlsqdrqmkgwh9dp54wrxzxl1"; + version = "0.2.2.0"; + sha256 = "12lwjmp31wp3yhbcrpndc89xcs65xyz910d0gzax0n403r24brhx"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ array base containers text vector ]; @@ -105249,6 +105182,7 @@ self: { ]; description = "GLL parser with simple combinator interface"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "funion" = callPackage @@ -105479,7 +105413,6 @@ self: { description = "A fused-effects adapter for squeal-postgresql"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "fused-effects-th" = callPackage @@ -105559,8 +105492,8 @@ self: { }: mkDerivation { pname = "futhark"; - version = "0.22.3"; - sha256 = "1si1hlax2vzaqcdprvgg8bcmk1xkwny5rb30fc3n8h0i0fpdmbic"; + version = "0.22.6"; + sha256 = "1zza3jqxi9x29qcjq90b5p4zxizh2bgm5k36d7f1gbmn5fl6smz0"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -105975,6 +105908,7 @@ self: { description = "Interface to the FXPak/FXPak Pro USB interface"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "g-npm" = callPackage @@ -106970,9 +106904,7 @@ self: { ]; description = "Generate CSV Exports of Your Gemini Trades, Transfers, & Earn Transactions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "gemini-exports"; - broken = true; }) {}; "gemini-router" = callPackage @@ -106990,6 +106922,7 @@ self: { ]; description = "A simple Happstack-style Gemini router"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "gemini-server" = callPackage @@ -107006,6 +106939,8 @@ self: { ]; description = "A lightweight server for the Gemini protocol"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "gemini-textboard" = callPackage @@ -107156,6 +107091,24 @@ self: { license = lib.licenses.bsd3; }) {}; + "general-allocate" = callPackage + ({ mkDerivation, base, containers, mtl, primitive, resourcet + , safe-exceptions, transformers + }: + mkDerivation { + pname = "general-allocate"; + version = "0.2.0.0"; + sha256 = "1i388gvnk4brc49pp44xaayddcpg78ii1yv0n4r09nl4iicggsyc"; + libraryHaskellDepends = [ + base containers mtl primitive resourcet safe-exceptions + transformers + ]; + description = "Exception-safe resource management in more monads"; + license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "general-games" = callPackage ({ mkDerivation, base, hspec, HUnit, monad-loops, MonadRandom , random, random-shuffle @@ -107232,7 +107185,6 @@ self: { description = "stringly-named getters for generic data"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "generic-aeson" = callPackage @@ -107252,17 +107204,6 @@ self: { }) {}; "generic-arbitrary" = callPackage - ({ mkDerivation, base, QuickCheck }: - mkDerivation { - pname = "generic-arbitrary"; - version = "0.2.2"; - sha256 = "12yj55lrddyxr3wfcki0pvcfa181p3q65chziw8qrmszn219yjsx"; - libraryHaskellDepends = [ base QuickCheck ]; - description = "Generic implementation for QuickCheck's Arbitrary"; - license = lib.licenses.mit; - }) {}; - - "generic-arbitrary_1_0_1" = callPackage ({ mkDerivation, base, deepseq, QuickCheck, tasty, tasty-discover , tasty-hunit, tasty-quickcheck }: @@ -107278,7 +107219,6 @@ self: { testToolDepends = [ tasty-discover ]; description = "Generic implementation for QuickCheck's Arbitrary"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "generic-binary" = callPackage @@ -107324,31 +107264,6 @@ self: { }) {}; "generic-data" = callPackage - ({ mkDerivation, ap-normalize, base, base-orphans, contravariant - , criterion, deepseq, generic-lens, ghc-boot-th, inspection-testing - , one-liner, show-combinators, tasty, tasty-hunit, template-haskell - , unordered-containers - }: - mkDerivation { - pname = "generic-data"; - version = "0.9.2.1"; - sha256 = "0hs5ahl1nx61kw5j0pnwgjrph7jgqq0djma956ksz6aivzldjf7q"; - revision = "1"; - editedCabalFile = "01ly8r9s34pj8i7ppjclclx3fmnv24lhic1n7cjz5cdk3cxa8klc"; - libraryHaskellDepends = [ - ap-normalize base base-orphans contravariant ghc-boot-th - show-combinators - ]; - testHaskellDepends = [ - base generic-lens inspection-testing one-liner show-combinators - tasty tasty-hunit template-haskell unordered-containers - ]; - benchmarkHaskellDepends = [ base criterion deepseq ]; - description = "Deriving instances with GHC.Generics and related utilities"; - license = lib.licenses.mit; - }) {}; - - "generic-data_1_0_0_0" = callPackage ({ mkDerivation, ap-normalize, base, base-orphans, contravariant , criterion, deepseq, generic-lens, ghc-boot-th, one-liner , show-combinators, tasty, tasty-hunit @@ -107367,7 +107282,6 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq ]; description = "Deriving instances with GHC.Generics and related utilities"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "generic-data-surgery" = callPackage @@ -107455,20 +107369,6 @@ self: { }) {}; "generic-functor" = callPackage - ({ mkDerivation, ap-normalize, base, transformers }: - mkDerivation { - pname = "generic-functor"; - version = "0.2.0.0"; - sha256 = "0zrjsn78ip9kigqgw5cxzm9d7pqf1svdzrc3rm041889ca0szwjv"; - revision = "3"; - editedCabalFile = "1b14y3qhwzp2gkby5zflwad1v8v26wnclb7wnjagy67pvhnnn93d"; - libraryHaskellDepends = [ ap-normalize base ]; - testHaskellDepends = [ base transformers ]; - description = "Deriving generalized functors with GHC.Generics"; - license = lib.licenses.mit; - }) {}; - - "generic-functor_1_1_0_0" = callPackage ({ mkDerivation, ap-normalize, base, transformers }: mkDerivation { pname = "generic-functor"; @@ -107478,7 +107378,6 @@ self: { testHaskellDepends = [ base transformers ]; description = "Deriving generalized functors with GHC.Generics"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "generic-labels" = callPackage @@ -107592,6 +107491,8 @@ self: { libraryHaskellDepends = [ base generics-sop ]; description = "First class pattern matching"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "generic-maybe" = callPackage @@ -107734,6 +107635,8 @@ self: { ]; description = "GenericPretty canonical instances"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "generic-random" = callPackage @@ -107757,6 +107660,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Magic record operations using generics"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "generic-server" = callPackage @@ -107811,9 +107716,7 @@ self: { executableHaskellDepends = [ base ]; description = "A map, where the keys may be complex structured data"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "bogus"; - broken = true; }) {}; "generic-xml" = callPackage @@ -108128,6 +108031,8 @@ self: { libraryHaskellDepends = [ base mtl template-haskell ]; description = "Use Template Haskell to generate Uniplate-like functions"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "geniserver" = callPackage @@ -108181,20 +108086,6 @@ self: { }) {}; "genvalidity" = callPackage - ({ mkDerivation, base, hspec, hspec-core, QuickCheck, random - , validity - }: - mkDerivation { - pname = "genvalidity"; - version = "1.0.0.1"; - sha256 = "1rkrw46mhb4cvvg69avmbvsmssg5aii9g2kb4xqa9488jf8wz3m0"; - libraryHaskellDepends = [ base QuickCheck random validity ]; - testHaskellDepends = [ base hspec hspec-core QuickCheck ]; - description = "Testing utilities for the validity library"; - license = lib.licenses.mit; - }) {}; - - "genvalidity_1_1_0_0" = callPackage ({ mkDerivation, base, hspec, hspec-core, QuickCheck, random , validity }: @@ -108206,7 +108097,6 @@ self: { testHaskellDepends = [ base hspec hspec-core QuickCheck ]; description = "Testing utilities for the validity library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-aeson" = callPackage @@ -108264,31 +108154,6 @@ self: { }) {}; "genvalidity-bytestring" = callPackage - ({ mkDerivation, base, bytestring, criterion, deepseq, genvalidity - , genvalidity-criterion, genvalidity-hspec, hspec, QuickCheck - , random, validity, validity-bytestring - }: - mkDerivation { - pname = "genvalidity-bytestring"; - version = "1.0.0.0"; - sha256 = "0bsi0y05pivyx14cvl7w46fgp1y5b53w2bk07q3vgzk079vfrcrg"; - libraryHaskellDepends = [ - base bytestring genvalidity QuickCheck random validity - validity-bytestring - ]; - testHaskellDepends = [ - base bytestring deepseq genvalidity genvalidity-hspec hspec - QuickCheck validity - ]; - benchmarkHaskellDepends = [ - base bytestring criterion genvalidity genvalidity-criterion - QuickCheck - ]; - description = "GenValidity support for ByteString"; - license = lib.licenses.mit; - }) {}; - - "genvalidity-bytestring_1_0_0_1" = callPackage ({ mkDerivation, base, bytestring, criterion, deepseq, genvalidity , genvalidity-criterion, genvalidity-hspec, hspec, QuickCheck , random, validity, validity-bytestring @@ -108311,7 +108176,6 @@ self: { ]; description = "GenValidity support for ByteString"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-case-insensitive" = callPackage @@ -108338,30 +108202,6 @@ self: { }) {}; "genvalidity-containers" = callPackage - ({ mkDerivation, base, containers, criterion, genvalidity - , genvalidity-criterion, genvalidity-hspec, genvalidity-property - , hspec, QuickCheck, validity, validity-containers - }: - mkDerivation { - pname = "genvalidity-containers"; - version = "1.0.0.0"; - sha256 = "146nnn1k82js6vkgx3ys5nl251jbryqg1lvb56fd3849az68px3k"; - libraryHaskellDepends = [ - base containers genvalidity QuickCheck validity validity-containers - ]; - testHaskellDepends = [ - base containers genvalidity genvalidity-hspec genvalidity-property - hspec QuickCheck validity validity-containers - ]; - benchmarkHaskellDepends = [ - base containers criterion genvalidity genvalidity-criterion - QuickCheck - ]; - description = "GenValidity support for containers"; - license = lib.licenses.mit; - }) {}; - - "genvalidity-containers_1_0_0_1" = callPackage ({ mkDerivation, base, containers, criterion, genvalidity , genvalidity-criterion, genvalidity-hspec, genvalidity-property , hspec, QuickCheck, validity, validity-containers @@ -108383,27 +108223,9 @@ self: { ]; description = "GenValidity support for containers"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-criterion" = callPackage - ({ mkDerivation, base, criterion, deepseq, genvalidity, QuickCheck - }: - mkDerivation { - pname = "genvalidity-criterion"; - version = "1.0.0.0"; - sha256 = "050i515v8wggamlnywmx93nlb8gqhnlf5qafsrn0gl5w8d82blc9"; - libraryHaskellDepends = [ - base criterion deepseq genvalidity QuickCheck - ]; - benchmarkHaskellDepends = [ - base criterion genvalidity QuickCheck - ]; - description = "Criterion benchmarks for generators"; - license = lib.licenses.mit; - }) {}; - - "genvalidity-criterion_1_1_0_0" = callPackage ({ mkDerivation, base, criterion, deepseq, genvalidity, QuickCheck , vector }: @@ -108419,7 +108241,6 @@ self: { ]; description = "Criterion benchmarks for generators"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-hspec" = callPackage @@ -108642,26 +108463,6 @@ self: { }) {}; "genvalidity-path" = callPackage - ({ mkDerivation, base, criterion, genvalidity - , genvalidity-criterion, genvalidity-hspec, hspec, path, QuickCheck - , validity-path - }: - mkDerivation { - pname = "genvalidity-path"; - version = "1.0.0.0"; - sha256 = "172gss10xl274s95l3ywgra32ldnl2a4gicc1xgi5q7v5zmj5gaa"; - libraryHaskellDepends = [ - base genvalidity path QuickCheck validity-path - ]; - testHaskellDepends = [ base genvalidity-hspec hspec path ]; - benchmarkHaskellDepends = [ - base criterion genvalidity genvalidity-criterion path QuickCheck - ]; - description = "GenValidity support for Path"; - license = lib.licenses.mit; - }) {}; - - "genvalidity-path_1_0_0_1" = callPackage ({ mkDerivation, base, criterion, genvalidity , genvalidity-criterion, genvalidity-hspec, hspec, path, QuickCheck , validity-path @@ -108679,7 +108480,6 @@ self: { ]; description = "GenValidity support for Path"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-persistent" = callPackage @@ -108872,26 +108672,6 @@ self: { }) {}; "genvalidity-time" = callPackage - ({ mkDerivation, base, criterion, genvalidity - , genvalidity-criterion, genvalidity-hspec, hspec, QuickCheck, time - , validity-time - }: - mkDerivation { - pname = "genvalidity-time"; - version = "1.0.0.0"; - sha256 = "15xj7x915524h0hi9b6c7y6imwkv3g7b10cr7wx8yaysh5d1cx7r"; - libraryHaskellDepends = [ - base genvalidity QuickCheck time validity-time - ]; - testHaskellDepends = [ base genvalidity-hspec hspec time ]; - benchmarkHaskellDepends = [ - base criterion genvalidity-criterion time - ]; - description = "GenValidity support for time"; - license = lib.licenses.mit; - }) {}; - - "genvalidity-time_1_0_0_1" = callPackage ({ mkDerivation, base, criterion, genvalidity , genvalidity-criterion, genvalidity-hspec, hspec, QuickCheck, time , validity-time @@ -108909,7 +108689,6 @@ self: { ]; description = "GenValidity support for time"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-typed-uuid" = callPackage @@ -108958,28 +108737,6 @@ self: { }) {}; "genvalidity-uuid" = callPackage - ({ mkDerivation, base, criterion, genvalidity - , genvalidity-criterion, genvalidity-hspec, hspec, QuickCheck, uuid - , validity, validity-uuid - }: - mkDerivation { - pname = "genvalidity-uuid"; - version = "1.0.0.0"; - sha256 = "1w53ziz3zbm4dv64gr60md5riis28bi3lrznzsrjyvd6nngxx460"; - libraryHaskellDepends = [ - base genvalidity QuickCheck uuid validity validity-uuid - ]; - testHaskellDepends = [ - base genvalidity genvalidity-hspec hspec QuickCheck uuid - ]; - benchmarkHaskellDepends = [ - base criterion genvalidity genvalidity-criterion QuickCheck uuid - ]; - description = "GenValidity support for UUID"; - license = lib.licenses.mit; - }) {}; - - "genvalidity-uuid_1_0_0_1" = callPackage ({ mkDerivation, base, criterion, genvalidity , genvalidity-criterion, genvalidity-hspec, hspec, QuickCheck, uuid , validity, validity-uuid @@ -108999,7 +108756,6 @@ self: { ]; description = "GenValidity support for UUID"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "genvalidity-vector" = callPackage @@ -109058,6 +108814,7 @@ self: { ]; description = "High precision conversion between GPS and UK Grid"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "geocalc" = callPackage @@ -109237,8 +108994,8 @@ self: { }: mkDerivation { pname = "geomancy"; - version = "0.2.4.0"; - sha256 = "1wc9fza03afha1ni7jh9gpm39k20d6n5kmjgkpd06aqpf6yaqfcl"; + version = "0.2.4.1"; + sha256 = "0rnp4ma5gxxd2lf9n36ifbw2jr0nl6jfxqzvvp86mlvs3a7jpsxd"; libraryHaskellDepends = [ base containers deepseq mono-traversable simple-affine-space ]; @@ -109408,7 +109165,6 @@ self: { license = "unknown"; hydraPlatforms = lib.platforms.none; mainProgram = "gf"; - broken = true; }) {}; "ggtsTC" = callPackage @@ -109504,6 +109260,7 @@ self: { description = "GHC-API compatibility helpers"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ghc-api-compat_8_10_7" = callPackage @@ -109517,6 +109274,7 @@ self: { description = "GHC-API compatibility helpers"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ghc-api-compat" = callPackage @@ -109528,6 +109286,8 @@ self: { libraryHaskellDepends = [ base containers ghc ]; description = "GHC-API compatibility helpers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ghc-bignum_1_3" = callPackage @@ -109610,15 +109370,15 @@ self: { "ghc-check" = callPackage ({ mkDerivation, base, containers, directory, filepath, ghc - , ghc-paths, process, safe-exceptions, template-haskell, th-compat - , transformers + , ghc-boot, ghc-paths, process, safe-exceptions, template-haskell + , th-compat, transformers }: mkDerivation { pname = "ghc-check"; version = "0.5.0.8"; sha256 = "1m3w1l8gkc7g9p7d07h3f71687rgs9lb5ildgfr1ihxp7wssh98h"; libraryHaskellDepends = [ - base containers directory filepath ghc ghc-paths process + base containers directory filepath ghc ghc-boot ghc-paths process safe-exceptions template-haskell th-compat transformers ]; description = "detect mismatches between compile-time and run-time versions of the ghc api"; @@ -109741,8 +109501,8 @@ self: { }: mkDerivation { pname = "ghc-debug-brick"; - version = "0.3.0.0"; - sha256 = "1ss8gi5x26p7lpcrdq961abz5q0lmnhyyv6x0l1dqsnqxfy71iv4"; + version = "0.4.0.0"; + sha256 = "1xdk23pzfa7q74rrxw26n47ki7iawysnf9liq6r9m92vll7nmq6y"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -109765,8 +109525,8 @@ self: { }: mkDerivation { pname = "ghc-debug-client"; - version = "0.3.0.0"; - sha256 = "0lr9yjgipfaqg22imxrka3srjm6bcb1illxg018pgl6l7hbpp4k7"; + version = "0.4.0.0"; + sha256 = "0r007lp3vpphcfzlv8p6k2w8r4f65if0kdh990d3pfj4m84xg81i"; libraryHaskellDepends = [ async base binary bitwise bytestring containers contra-tracer directory dom-lt eventlog2html filepath ghc-debug-common @@ -109777,6 +109537,7 @@ self: { description = "Useful functions for writing heap analysis tools which use ghc-debug"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ghc-debug-common" = callPackage @@ -109786,8 +109547,8 @@ self: { }: mkDerivation { pname = "ghc-debug-common"; - version = "0.3.0.0"; - sha256 = "1nb1m8lks5d0svzdl2y1pww0afdc4ywc30myih170w3mf0cs2rld"; + version = "0.4.0.0"; + sha256 = "1h3a1j97xnfpki25nsc80kql751xz59i3cvcf12qh97ii2vziwk5"; libraryHaskellDepends = [ array base binary bytestring containers cpu deepseq directory dom-lt filepath ghc-debug-convention ghc-heap hashable transformers @@ -109795,20 +109556,17 @@ self: { ]; description = "Connect to a socket created by ghc-debug-stub and analyse the heap of the debuggee program"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ghc-debug-convention" = callPackage ({ mkDerivation, base, directory, filepath }: mkDerivation { pname = "ghc-debug-convention"; - version = "0.3.0.0"; - sha256 = "0y7z7xqx5vn6bvx90rvhhajk0jxmp1i1qyhmq7hwhvlyb4p87282"; + version = "0.4.0.0"; + sha256 = "0mmghsf4g4hwls1cldmqzjq9sfnwwp0d94ahxryxd0dla7x423s6"; libraryHaskellDepends = [ base directory filepath ]; description = "Definitions needed by ghc-debug-stub and ghc-debug-common"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ghc-debug-stub" = callPackage @@ -109817,14 +109575,13 @@ self: { }: mkDerivation { pname = "ghc-debug-stub"; - version = "0.3.0.0"; - sha256 = "0m7zngjlcijddz5xrns8531aim3am8y1rki4qj04gvbh7pdq5q3c"; + version = "0.4.0.0"; + sha256 = "0qnshkk3cw26l6x8c415l4s99qkpq5hgl1p7n85w8kbi1xzlgm0w"; libraryHaskellDepends = [ base directory filepath ghc-debug-convention ghc-prim ]; description = "Functions for instrumenting your application so the heap can be analysed with ghc-debug-common"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ghc-definitions-th" = callPackage @@ -109924,28 +109681,28 @@ self: { }: mkDerivation { pname = "ghc-events"; - version = "0.17.0.3"; - sha256 = "0m50x2ycv43d7yzwksbs1zc11wlyiszjz662fj47v9r7hacx335v"; + version = "0.18.0"; + sha256 = "0kwml9dgbj0px4bc3d9kqmw2ijc3y7irs4n02nzm7ilgcvy7hv6h"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ array base binary bytestring containers text vector ]; - executableHaskellDepends = [ base containers ]; + executableHaskellDepends = [ base bytestring containers ]; testHaskellDepends = [ base ]; description = "Library and tool for parsing .eventlog files from GHC"; license = lib.licenses.bsd3; mainProgram = "ghc-events"; }) {}; - "ghc-events_0_18_0" = callPackage + "ghc-events_0_19_0" = callPackage ({ mkDerivation, array, base, binary, bytestring, containers, text , vector }: mkDerivation { pname = "ghc-events"; - version = "0.18.0"; - sha256 = "0kwml9dgbj0px4bc3d9kqmw2ijc3y7irs4n02nzm7ilgcvy7hv6h"; + version = "0.19.0"; + sha256 = "034wy6rb51xi0avkcn1gy4sj6yf479hwd8y0zxrhqp4y7wb7bjx5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -110011,7 +109768,7 @@ self: { broken = true; }) {}; - "ghc-exactprint" = callPackage + "ghc-exactprint_0_6_4" = callPackage ({ mkDerivation, base, bytestring, containers, Diff, directory , filemanip, filepath, free, ghc, ghc-boot, ghc-paths, HUnit, mtl , silently, syb @@ -110034,10 +109791,14 @@ self: { ]; description = "ExactPrint for GHC"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; - "ghc-exactprint_1_5_0" = callPackage - ({ mkDerivation }: + "ghc-exactprint" = callPackage + ({ mkDerivation, base, bytestring, containers, data-default, Diff + , directory, fail, filemanip, filepath, free, ghc, ghc-boot + , ghc-paths, HUnit, mtl, ordered-containers, silently, syb + }: mkDerivation { pname = "ghc-exactprint"; version = "1.5.0"; @@ -110046,9 +109807,17 @@ self: { editedCabalFile = "1v6my8bnhjhw7k3v2q9iwjpz9lj5g6ilvlzdq6svcabxahmzbr2c"; isLibrary = true; isExecutable = true; + libraryHaskellDepends = [ + base bytestring containers data-default directory fail filepath + free ghc ghc-boot ghc-paths mtl ordered-containers syb + ]; + testHaskellDepends = [ + base bytestring containers data-default Diff directory fail + filemanip filepath ghc ghc-boot ghc-paths HUnit mtl + ordered-containers silently syb + ]; description = "ExactPrint for GHC"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ghc-exactprint_1_6_1" = callPackage @@ -110261,27 +110030,6 @@ self: { }) {}; "ghc-lib" = callPackage - ({ mkDerivation, alex, array, base, binary, bytestring, containers - , deepseq, directory, exceptions, filepath, ghc-lib-parser - , ghc-prim, happy, hpc, parsec, pretty, process, rts, time - , transformers, unix - }: - mkDerivation { - pname = "ghc-lib"; - version = "9.0.2.20211226"; - sha256 = "0988500fwl24nh1i2pv22332sx8hgi6b2229ff3drd9jgpp886x1"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - array base binary bytestring containers deepseq directory - exceptions filepath ghc-lib-parser ghc-prim hpc parsec pretty - process rts time transformers unix - ]; - libraryToolDepends = [ alex happy ]; - description = "The GHC API, decoupled from GHC versions"; - license = lib.licenses.bsd3; - }) {}; - - "ghc-lib_9_2_5_20221107" = callPackage ({ mkDerivation, alex, array, base, binary, bytestring, containers , deepseq, directory, exceptions, filepath, ghc-lib-parser , ghc-prim, happy, hpc, parsec, pretty, process, rts, time @@ -110300,7 +110048,6 @@ self: { libraryToolDepends = [ alex happy ]; description = "The GHC API, decoupled from GHC versions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ghc-lib_9_4_3_20221104" = callPackage @@ -110346,26 +110093,6 @@ self: { }) {}; "ghc-lib-parser" = callPackage - ({ mkDerivation, alex, array, base, binary, bytestring, containers - , deepseq, directory, exceptions, filepath, ghc-prim, happy, parsec - , pretty, process, time, transformers, unix - }: - mkDerivation { - pname = "ghc-lib-parser"; - version = "9.0.2.20211226"; - sha256 = "0krf99pfnyfly22y5pgfsgpxfvbax9jivzjkhgg67hl0synladvz"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - array base binary bytestring containers deepseq directory - exceptions filepath ghc-prim parsec pretty process time - transformers unix - ]; - libraryToolDepends = [ alex happy ]; - description = "The GHC API, decoupled from GHC versions"; - license = lib.licenses.bsd3; - }) {}; - - "ghc-lib-parser_9_2_5_20221107" = callPackage ({ mkDerivation, alex, array, base, binary, bytestring, containers , deepseq, directory, exceptions, filepath, ghc-prim, happy, parsec , pretty, process, time, transformers, unix @@ -110383,7 +110110,6 @@ self: { libraryToolDepends = [ alex happy ]; description = "The GHC API, decoupled from GHC versions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ghc-lib-parser_9_4_3_20221104" = callPackage @@ -110434,8 +110160,8 @@ self: { }: mkDerivation { pname = "ghc-lib-parser-ex"; - version = "9.0.0.6"; - sha256 = "1lqhddx4sw2d407q12ny1ims4khjxgajlk07wvrw0wcgmx91dmc7"; + version = "9.2.0.4"; + sha256 = "138wkpy7qpdkp07028flab3lwq4b3mns0qcrkfrhclixlz8pi74v"; libraryHaskellDepends = [ base bytestring containers ghc ghc-boot ghc-boot-th uniplate ]; @@ -110447,26 +110173,6 @@ self: { license = lib.licenses.bsd3; }) {}; - "ghc-lib-parser-ex_9_2_0_4" = callPackage - ({ mkDerivation, base, bytestring, containers, directory, extra - , filepath, ghc-lib-parser, tasty, tasty-hunit, uniplate - }: - mkDerivation { - pname = "ghc-lib-parser-ex"; - version = "9.2.0.4"; - sha256 = "138wkpy7qpdkp07028flab3lwq4b3mns0qcrkfrhclixlz8pi74v"; - libraryHaskellDepends = [ - base bytestring containers ghc-lib-parser uniplate - ]; - testHaskellDepends = [ - base directory extra filepath ghc-lib-parser tasty tasty-hunit - uniplate - ]; - description = "Algorithms on GHC parse trees"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - }) {}; - "ghc-lib-parser-ex_9_2_1_1" = callPackage ({ mkDerivation, base, bytestring, containers, directory, extra , filepath, ghc-lib-parser, tasty, tasty-hunit, uniplate @@ -110768,8 +110474,8 @@ self: { }: mkDerivation { pname = "ghc-prof"; - version = "1.4.1.11"; - sha256 = "1i6a3dx9ml8r4q8rvap7rw3qhvksgaws1hzna34ldpkwh6b7kfxy"; + version = "1.4.1.12"; + sha256 = "15gshlj8jp85m9y05z1wmssq5rkqyix9890hy1rkmy7nmkhij6mj"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -110983,13 +110689,13 @@ self: { }: mkDerivation { pname = "ghc-syntax-highlighter"; - version = "0.0.7.0"; - sha256 = "123kvcdlzx18n14122xbpp587byfd8w0z886grlxkzinb53bmzg6"; + version = "0.0.8.0"; + sha256 = "1s6bq90s75qfiv54qsskawv3ihwjhdml4fxq56ww01p54mnrwr27"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base ghc-lib-parser text ]; testHaskellDepends = [ base hspec text ]; testToolDepends = [ hspec-discover ]; - description = "Syntax highlighter for Haskell using lexer of GHC itself"; + description = "Syntax highlighter for Haskell using the lexer of GHC"; license = lib.licenses.bsd3; }) {}; @@ -111011,9 +110717,9 @@ self: { "ghc-tags" = callPackage ({ mkDerivation, aeson, async, attoparsec, base, bytestring - , containers, deepseq, directory, filepath, ghc-lib, ghc-paths - , optparse-applicative, process, stm, temporary, text, time, vector - , yaml + , containers, deepseq, directory, filepath, ghc, ghc-boot + , ghc-paths, optparse-applicative, process, stm, temporary, text + , time, vector, yaml }: mkDerivation { pname = "ghc-tags"; @@ -111023,14 +110729,12 @@ self: { isExecutable = true; executableHaskellDepends = [ aeson async attoparsec base bytestring containers deepseq directory - filepath ghc-lib ghc-paths optparse-applicative process stm + filepath ghc ghc-boot ghc-paths optparse-applicative process stm temporary text time vector yaml ]; description = "Utility for generating ctags and etags with GHC API"; license = lib.licenses.mpl20; - hydraPlatforms = lib.platforms.none; mainProgram = "ghc-tags"; - broken = true; }) {}; "ghc-tags-core" = callPackage @@ -111235,6 +110939,32 @@ self: { license = lib.licenses.bsd3; }) {}; + "ghc-typelits-presburger_0_7_1_0" = callPackage + ({ mkDerivation, base, containers, equational-reasoning, ghc + , ghc-tcplugins-extra, mtl, pretty, reflection, syb, tasty + , tasty-discover, tasty-expected-failure, tasty-hunit, text + , transformers + }: + mkDerivation { + pname = "ghc-typelits-presburger"; + version = "0.7.1.0"; + sha256 = "03lgzfn0vhcnfyyhb2d2shjwhinzk293k0yjlv6wac2yxxfrvnaj"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers ghc ghc-tcplugins-extra mtl pretty reflection syb + transformers + ]; + testHaskellDepends = [ + base equational-reasoning tasty tasty-discover + tasty-expected-failure tasty-hunit text + ]; + testToolDepends = [ tasty-discover ]; + description = "Presburger Arithmetic Solver for GHC Type-level natural numbers"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "ghc-usage" = callPackage ({ mkDerivation, base, containers, ghc, ghc-paths, unix }: mkDerivation { @@ -111311,8 +111041,8 @@ self: { }: mkDerivation { pname = "ghci-dap"; - version = "0.0.19.0"; - sha256 = "07f0q83pcma3c0v7sdkkb1nzx40f55v47v44gaa2pg6clkl7p1gx"; + version = "0.0.20.0"; + sha256 = "11jzlvv48fvp87p2rkz3rab0707fb3yq0lz1146zh44adpkgf5vb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -111526,8 +111256,7 @@ self: { , hslogger, implicit-hie, implicit-hie-cradle, lens, list-t, lsp , lsp-test, lsp-types, monoid-subclasses, mtl, network-uri , opentelemetry, optparse-applicative, parallel, prettyprinter - , prettyprinter-ansi-terminal, QuickCheck, random - , record-dot-preprocessor, record-hasfield, regex-tdfa + , prettyprinter-ansi-terminal, QuickCheck, random, regex-tdfa , safe-exceptions, shake, sorted-list, sqlite-simple, stm , stm-containers, syb, tasty, tasty-expected-failure, tasty-hunit , tasty-quickcheck, tasty-rerun, text, text-rope, time @@ -111565,10 +111294,9 @@ self: { aeson async base containers data-default directory extra filepath fuzzy ghc ghc-typelits-knownnat hls-plugin-api lens list-t lsp lsp-test lsp-types monoid-subclasses network-uri QuickCheck random - record-dot-preprocessor record-hasfield regex-tdfa shake - sqlite-simple stm stm-containers tasty tasty-expected-failure - tasty-hunit tasty-quickcheck tasty-rerun text text-rope - unordered-containers + regex-tdfa shake sqlite-simple stm stm-containers tasty + tasty-expected-failure tasty-hunit tasty-quickcheck tasty-rerun + text text-rope unordered-containers ]; testToolDepends = [ implicit-hie ]; description = "The core of an IDE"; @@ -111715,6 +111443,7 @@ self: { description = "GHCJS DOM Hello World, an example package"; license = lib.licenses.mit; badPlatforms = lib.platforms.darwin; + hydraPlatforms = lib.platforms.none; }) {}; "ghcjs-dom-jsaddle" = callPackage @@ -111964,7 +111693,6 @@ self: { license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "ghcup"; - broken = true; }) {}; "ghczdecode" = callPackage @@ -112787,6 +112515,8 @@ self: { ]; description = "Declarative GTK+ programming in Haskell"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "gi-gtk-declarative-app-simple" = callPackage @@ -112808,6 +112538,7 @@ self: { ]; description = "Declarative GTK+ programming in Haskell in the style of Pux"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; }) {}; "gi-gtk-hs" = callPackage @@ -113123,8 +112854,6 @@ self: { ''; description = "PangoCairo bindings"; license = lib.licenses.lgpl21Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) cairo; inherit (pkgs) pango;}; "gi-poppler" = callPackage @@ -113358,8 +113087,8 @@ self: { "gi-xlib" = callPackage ({ mkDerivation, base, bytestring, Cabal, containers, haskell-gi - , haskell-gi-base, haskell-gi-overloading, text, transformers - , xlibsWrapper + , haskell-gi-base, haskell-gi-overloading, libX11, text + , transformers }: mkDerivation { pname = "gi-xlib"; @@ -113370,10 +113099,10 @@ self: { base bytestring containers haskell-gi haskell-gi-base haskell-gi-overloading text transformers ]; - libraryPkgconfigDepends = [ xlibsWrapper ]; + libraryPkgconfigDepends = [ libX11 ]; description = "xlib bindings"; license = lib.licenses.lgpl21Only; - }) {inherit (pkgs) xlibsWrapper;}; + }) {inherit (pkgs.xorg) libX11;}; "giak" = callPackage ({ mkDerivation, async, base, bytestring, Cabal, containers @@ -113452,9 +113181,7 @@ self: { ]; description = "An implementation of the Jinja2 template language in Haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "ginger"; - broken = true; }) {}; "gingersnap" = callPackage @@ -113546,6 +113273,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "gipeda"; + broken = true; }) {}; "giphy-api" = callPackage @@ -113666,8 +113394,8 @@ self: { }: mkDerivation { pname = "git-annex"; - version = "10.20221103"; - sha256 = "0fwg74ldw2paq9dr052hqjz2x219zkkramvm8jskpnnnch9c6jgm"; + version = "10.20221212"; + sha256 = "0afnl2w29w4j0229rsla93dzkmhcjlp8dv76sr861n186ywv8rzg"; configureFlags = [ "-fassistant" "-f-benchmark" "-fdbus" "-f-debuglocks" "-fmagicmime" "-fnetworkbsd" "-fpairing" "-fproduction" "-fs3" "-ftorrentparser" @@ -113737,7 +113465,9 @@ self: { ]; description = "git checkout command-line tool"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "git-brunch"; + broken = true; }) {}; "git-checklist" = callPackage @@ -113983,7 +113713,6 @@ self: { ]; description = "Passively snapshots working tree changes efficiently"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "git-monitor"; }) {}; @@ -114200,38 +113929,6 @@ self: { }) {}; "github" = callPackage - ({ mkDerivation, aeson, base, base-compat, base16-bytestring - , binary, binary-instances, bytestring, containers, cryptohash-sha1 - , deepseq, deepseq-generics, exceptions, file-embed, hashable - , hspec, hspec-discover, http-client, http-client-tls - , http-link-header, http-types, iso8601-time, mtl, network-uri - , tagged, text, time-compat, tls, transformers, transformers-compat - , unordered-containers, vector, vector-instances - }: - mkDerivation { - pname = "github"; - version = "0.27"; - sha256 = "0vlqsdhhjnfw9wk5vn1i8cmwa45vgczhz4nn46mwgs600xfn94am"; - revision = "1"; - editedCabalFile = "02424a74kjzmwl0nwc4gl7xg0cgdsbspwj3mzzzgx5xxlh3vi212"; - libraryHaskellDepends = [ - aeson base base-compat base16-bytestring binary binary-instances - bytestring containers cryptohash-sha1 deepseq deepseq-generics - exceptions hashable http-client http-client-tls http-link-header - http-types iso8601-time mtl network-uri tagged text time-compat tls - transformers transformers-compat unordered-containers vector - vector-instances - ]; - testHaskellDepends = [ - aeson base base-compat bytestring file-embed hspec tagged text - unordered-containers vector - ]; - testToolDepends = [ hspec-discover ]; - description = "Access to the GitHub API, v3"; - license = lib.licenses.bsd3; - }) {}; - - "github_0_28_0_1" = callPackage ({ mkDerivation, aeson, base, base-compat, base16-bytestring , binary, binary-instances, bytestring, containers, cryptohash-sha1 , deepseq, deepseq-generics, exceptions, file-embed, hashable @@ -114258,7 +113955,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Access to the GitHub API, v3"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "github-backup" = callPackage @@ -114369,8 +114065,8 @@ self: { pname = "github-rest"; version = "1.1.2"; sha256 = "139ysq1m1ndy6z1znfd1np25ynxankkfm6xmwabhdr7yiqzi2v1b"; - revision = "1"; - editedCabalFile = "09vinl6l5jy8bz504bhw3g2baj9fc0fym2vnh8q76xzmz2s0b686"; + revision = "2"; + editedCabalFile = "0390zxa270d8x8a0imd71z72l6hxnn1ip6jjgrrvrs3zj20c7adp"; libraryHaskellDepends = [ aeson base bytestring http-client http-client-tls http-types jwt mtl scientific text time transformers unliftio unliftio-core @@ -114482,8 +114178,8 @@ self: { }: mkDerivation { pname = "github-webhooks"; - version = "0.15.0"; - sha256 = "0cmavbh7c59pimspjj42mwlac5jmlgagjsw4239hcsrna5yi4wdz"; + version = "0.16.0"; + sha256 = "1h0l4p0wyy4d6k43gxjfjx2fv0a59xd900dr14ydxdjn75yhc7g0"; libraryHaskellDepends = [ aeson base base16-bytestring bytestring cryptonite deepseq deepseq-generics memory text time vector @@ -114493,15 +114189,15 @@ self: { license = lib.licenses.mit; }) {}; - "github-webhooks_0_16_0" = callPackage + "github-webhooks_0_17_0" = callPackage ({ mkDerivation, aeson, base, base16-bytestring, bytestring , cryptonite, deepseq, deepseq-generics, hspec, memory, text, time , vector }: mkDerivation { pname = "github-webhooks"; - version = "0.16.0"; - sha256 = "1h0l4p0wyy4d6k43gxjfjx2fv0a59xd900dr14ydxdjn75yhc7g0"; + version = "0.17.0"; + sha256 = "06dh28yqhjmh4gks0r20x6cn1974a0cx1yr3n55l3slr1w9j46bv"; libraryHaskellDepends = [ aeson base base16-bytestring bytestring cryptonite deepseq deepseq-generics memory text time vector @@ -114731,8 +114427,6 @@ self: { ]; description = "Libgit2 backend for gitlib"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "gitlib-s3" = callPackage @@ -114857,7 +114551,6 @@ self: { description = "A document store library for Git + JSON"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "gitter" = callPackage @@ -115317,15 +115010,14 @@ self: { "gll" = callPackage ({ mkDerivation, array, base, containers, pretty, regex-applicative - , text, time, TypeCompose + , text, time }: mkDerivation { pname = "gll"; - version = "0.4.0.13"; - sha256 = "1kw1wmc59fz87z8xwdbg9988ghvhdyfj594cxnd28gw0z04gsz4m"; + version = "0.4.1.0"; + sha256 = "00gdgyglm4vif41sbi5wx8r69bnvp8ap5wfi4ahxz51ykhmwl2ka"; libraryHaskellDepends = [ array base containers pretty regex-applicative text time - TypeCompose ]; description = "GLL parser with simple combinator interface"; license = lib.licenses.bsd3; @@ -115440,21 +115132,6 @@ self: { }) {}; "gloss" = callPackage - ({ mkDerivation, base, bmp, bytestring, containers, ghc-prim - , gloss-rendering, GLUT, OpenGL - }: - mkDerivation { - pname = "gloss"; - version = "1.13.2.1"; - sha256 = "0ladpnk2zw27bz895b9gphhrmawb0gwvzrmnisk56msjdxwqq5pn"; - libraryHaskellDepends = [ - base bmp bytestring containers ghc-prim gloss-rendering GLUT OpenGL - ]; - description = "Painless 2D vector graphics, animations and simulations"; - license = lib.licenses.mit; - }) {}; - - "gloss_1_13_2_2" = callPackage ({ mkDerivation, base, bmp, bytestring, containers, ghc-prim , gloss-rendering, GLUT, OpenGL }: @@ -115467,7 +115144,6 @@ self: { ]; description = "Painless 2D vector graphics, animations and simulations"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "gloss-accelerate" = callPackage @@ -115632,21 +115308,6 @@ self: { }) {}; "gloss-rendering" = callPackage - ({ mkDerivation, base, bmp, bytestring, containers, GLUT, OpenGL }: - mkDerivation { - pname = "gloss-rendering"; - version = "1.13.1.1"; - sha256 = "1pkzm7zzfdya8cz3h66akx8785h3vxbnyb815liw4nilvwg01d9x"; - revision = "1"; - editedCabalFile = "10x83cpxp6yrmamjg4kjm3pzlhh6zj2rdw686py0vcx0jrjy3qg7"; - libraryHaskellDepends = [ - base bmp bytestring containers GLUT OpenGL - ]; - description = "Gloss picture data types and rendering functions"; - license = lib.licenses.mit; - }) {}; - - "gloss-rendering_1_13_1_2" = callPackage ({ mkDerivation, base, bmp, bytestring, containers, GLUT, OpenGL }: mkDerivation { pname = "gloss-rendering"; @@ -115657,7 +115318,6 @@ self: { ]; description = "Gloss picture data types and rendering functions"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "gloss-sodium" = callPackage @@ -115765,20 +115425,22 @@ self: { }: mkDerivation { pname = "gltf-loader"; - version = "0.2.0.1"; - sha256 = "0dx4v2sffg6ffzf5asvc18a2k258qyh68sxmcdf4ycfr5wfskl15"; + version = "0.3.0.0"; + sha256 = "0xzcnv9alp78y61s52n8palqnp9jdyz0d9ggx2cqlh2xyf8020xl"; + revision = "1"; + editedCabalFile = "1xxnzvj8lksk10kzaf89xm26vafbfkixhji8zankz9cg63fwmsz1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base binary bytestring gltf-codec linear microlens rio - unordered-containers + base binary bytestring gltf-codec linear microlens + microlens-platform rio unordered-containers ]; executableHaskellDepends = [ base linear microlens microlens-platform optparse-simple rio ]; testHaskellDepends = [ - base base64 binary bytestring gltf-codec hspec linear microlens rio - unordered-containers + base base64 binary bytestring gltf-codec hspec linear microlens + microlens-platform rio unordered-containers ]; description = "High level GlTF loader"; license = lib.licenses.mit; @@ -115922,8 +115584,6 @@ self: { ]; description = "turtle like LOGO with glut"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "gmail-simple" = callPackage @@ -116383,9 +116043,7 @@ self: { executableHaskellDepends = [ base criterion megaparsec text ]; description = "Megaparsec parser for Godot `tscn` and `gdextension` files"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "bench"; - broken = true; }) {}; "gofer-prelude" = callPackage @@ -118821,6 +118479,7 @@ self: { ]; description = "Bindings to the Google Geocoding API (formerly Maps Geocoding API)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "google-oauth2" = callPackage @@ -118955,6 +118614,8 @@ self: { ]; description = "Bindings to the Google Maps Static API (formerly Static Maps API)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "google-translate" = callPackage @@ -119308,6 +118969,8 @@ self: { ]; description = "A Haskell Vault KVv2 secret engine client"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "gotta-go-fast" = callPackage @@ -119326,7 +118989,9 @@ self: { ]; description = "A command line utility for practicing typing"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "gotta-go-fast"; + broken = true; }) {}; "gotyno-hs" = callPackage @@ -119419,8 +119084,8 @@ self: { }: mkDerivation { pname = "gpmf"; - version = "0.1.1.1"; - sha256 = "1yl84ghhif3h485gg618ig006kph7ifri0jmi0bwii7da4i1ahsi"; + version = "0.1.2.0"; + sha256 = "0z0l1jl7am48lc8c92jb6l12r5khgil9d5n2rrp53n7ncsljbh1n"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -119728,7 +119393,6 @@ self: { description = "Functional Reactive Programming core"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "grapefruit-records" = callPackage @@ -120276,17 +119940,20 @@ self: { }: mkDerivation { pname = "graphmod"; - version = "1.4.4"; - sha256 = "12q9kkxyyma23dgzpdnlsrklk20isr4jf2yslkzyb6ny5xmfxsac"; - isLibrary = false; + version = "1.4.5.1"; + sha256 = "1k1nji14wfn36jym0fqc3yfiwd6gimyk109njrp7b1ds8zfp0ayp"; + isLibrary = true; isExecutable = true; - executableHaskellDepends = [ + libraryHaskellDepends = [ base Cabal containers directory dotgen filepath haskell-lexer pretty ]; + executableHaskellDepends = [ base ]; description = "Present the module dependencies of a program as a \"dot\" graph"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "graphmod"; + broken = true; }) {}; "graphmod-plugin" = callPackage @@ -120373,8 +120040,8 @@ self: { }: mkDerivation { pname = "graphql-client"; - version = "1.2.0"; - sha256 = "1570gsfz3f2dlqpmmb00kr2hcjsfz9p4knfnwvjcm2lij7avcvnp"; + version = "1.2.1"; + sha256 = "02wrwb5vgj4px6m178wmfzzy1d2h6018wj106n0j4lzbxyh107iy"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -120382,13 +120049,11 @@ self: { template-haskell text transformers unliftio-core ]; executableHaskellDepends = [ - aeson aeson-schemas base bytestring file-embed http-client - http-client-tls http-types mtl optparse-applicative path path-io - template-haskell text transformers typed-process unliftio-core + base bytestring file-embed optparse-applicative path path-io + template-haskell typed-process ]; testHaskellDepends = [ - aeson aeson-schemas base http-client http-client-tls http-types mtl - tasty tasty-hunit template-haskell text transformers unliftio-core + aeson aeson-schemas base mtl tasty tasty-hunit ]; description = "A client for Haskell programs to query a GraphQL API"; license = lib.licenses.bsd3; @@ -120414,8 +120079,6 @@ self: { ]; description = "GraphQL with batteries"; license = lib.licenses.mpl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "graphql-utils" = callPackage @@ -120725,9 +120388,8 @@ self: { "greenclip" = callPackage ({ mkDerivation, base, binary, bytestring, directory, exceptions - , hashable, libXau, libXScrnSaver, microlens, microlens-mtl + , hashable, libX11, libXau, libXScrnSaver, microlens, microlens-mtl , protolude, text, tomland, unix, vector, wordexp, X11, xcb, xdmcp - , xlibsWrapper }: mkDerivation { pname = "greenclip"; @@ -120740,13 +120402,13 @@ self: { microlens-mtl protolude text tomland unix vector wordexp X11 ]; executablePkgconfigDepends = [ - libXau libXScrnSaver xcb xdmcp xlibsWrapper + libX11 libXau libXScrnSaver xcb xdmcp ]; description = "Simple clipboard manager to be integrated with rofi"; license = lib.licenses.bsd3; mainProgram = "greenclip"; - }) {inherit (pkgs.xorg) libXScrnSaver; inherit (pkgs.xorg) libXau; - xcb = null; xdmcp = null; inherit (pkgs) xlibsWrapper;}; + }) {inherit (pkgs.xorg) libX11; inherit (pkgs.xorg) libXScrnSaver; + inherit (pkgs.xorg) libXau; xcb = null; xdmcp = null;}; "greg-client" = callPackage ({ mkDerivation, base, binary, bytestring, clock, hostname, network @@ -120813,7 +120475,6 @@ self: { description = "Practical Deep Learning in Haskell"; license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "greplicate" = callPackage @@ -120835,46 +120496,45 @@ self: { }) {}; "greskell" = callPackage - ({ mkDerivation, aeson, base, bytestring, doctest, doctest-discover - , exceptions, greskell-core, hashable, hspec, hspec-discover - , semigroups, should-not-typecheck, text, transformers - , unordered-containers, vector + ({ mkDerivation, aeson, base, bytestring, exceptions, greskell-core + , hashable, hspec, hspec-discover, semigroups, should-not-typecheck + , text, transformers, unordered-containers, vector }: mkDerivation { pname = "greskell"; - version = "2.0.0.0"; - sha256 = "0havwzskc9abganrgj991r7szcagzw4vkm8qh6b7xqykdf4479xv"; + version = "2.0.1.0"; + sha256 = "0p9sv21dj7sa9w5abz78q5mq72908iih8x61w19xf5z9rz5n5war"; libraryHaskellDepends = [ aeson base exceptions greskell-core hashable semigroups text transformers unordered-containers vector ]; testHaskellDepends = [ - aeson base bytestring doctest doctest-discover greskell-core hspec - should-not-typecheck text unordered-containers + aeson base bytestring greskell-core hspec should-not-typecheck text + unordered-containers ]; - testToolDepends = [ doctest-discover hspec-discover ]; + testToolDepends = [ hspec-discover ]; description = "Haskell binding for Gremlin graph query language"; license = lib.licenses.bsd3; }) {}; "greskell-core" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, doctest - , doctest-discover, hashable, hspec, hspec-discover, QuickCheck - , scientific, semigroups, text, unordered-containers, uuid, vector + ({ mkDerivation, aeson, base, bytestring, containers, hashable + , hspec, hspec-discover, QuickCheck, scientific, semigroups, text + , unordered-containers, uuid, vector }: mkDerivation { pname = "greskell-core"; - version = "1.0.0.0"; - sha256 = "0b86rwghrbqzqk5vb9n6qsc4a12pbnwvvy20wdiv1g51dpyi440a"; + version = "1.0.0.1"; + sha256 = "1pjsx1cjm18k2x0h2b80y7qv666c2w5w2gz49qi0vdhx1kgrnzvr"; libraryHaskellDepends = [ - aeson base containers hashable scientific semigroups text - unordered-containers uuid vector + aeson base bytestring containers hashable scientific semigroups + text unordered-containers uuid vector ]; testHaskellDepends = [ - aeson base bytestring doctest doctest-discover hspec QuickCheck - text unordered-containers vector + aeson base bytestring hspec QuickCheck text unordered-containers + vector ]; - testToolDepends = [ doctest-discover hspec-discover ]; + testToolDepends = [ hspec-discover ]; description = "Haskell binding for Gremlin graph query language - core data types and tools"; license = lib.licenses.bsd3; }) {}; @@ -120886,8 +120546,8 @@ self: { }: mkDerivation { pname = "greskell-websocket"; - version = "1.0.0.0"; - sha256 = "1nw8jz843080w6jq4j8bmqv9pz66va1yp36a0d1vkybhdhlxs5vy"; + version = "1.0.0.1"; + sha256 = "1r9bs5aswh4kxsmwylpizp2b9xiwljic5h18k6qr9i2hgmpshqcn"; libraryHaskellDepends = [ aeson async base base64-bytestring bytestring greskell-core hashtables safe-exceptions stm text unordered-containers uuid @@ -121026,6 +120686,24 @@ self: { }) {}; "gridtables" = callPackage + ({ mkDerivation, array, base, containers, doclayout, parsec, tasty + , tasty-hunit, text + }: + mkDerivation { + pname = "gridtables"; + version = "0.0.3.0"; + sha256 = "1akix9flnax6dx3s9c7yyzb19nw13y8rmh0kz7y3hpjlkaz659xy"; + revision = "1"; + editedCabalFile = "0m2651z81n8s6hb8id7y6k2kprsgwnj7pcd6p8lmdpkzzz3wwd0c"; + libraryHaskellDepends = [ + array base containers doclayout parsec text + ]; + testHaskellDepends = [ array base parsec tasty tasty-hunit text ]; + description = "Parser for reStructuredText-style grid tables"; + license = lib.licenses.mit; + }) {}; + + "gridtables_0_1_0_0" = callPackage ({ mkDerivation, array, base, containers, doclayout, parsec, tasty , tasty-hunit, text }: @@ -121039,6 +120717,7 @@ self: { testHaskellDepends = [ array base parsec tasty tasty-hunit text ]; description = "Parser for reStructuredText-style grid tables"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "grm" = callPackage @@ -121164,6 +120843,8 @@ self: { ]; description = "Type-safe datatype-database mapping library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "groundhog-converters" = callPackage @@ -121226,7 +120907,6 @@ self: { description = "MySQL backend for the groundhog library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "groundhog-postgresql" = callPackage @@ -121245,6 +120925,7 @@ self: { ]; description = "PostgreSQL backend for the groundhog library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "groundhog-sqlite" = callPackage @@ -121262,6 +120943,7 @@ self: { ]; description = "Sqlite3 backend for the groundhog library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "groundhog-th" = callPackage @@ -121281,7 +120963,6 @@ self: { description = "Type-safe datatype-database mapping library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "group-by-date" = callPackage @@ -121300,7 +120981,9 @@ self: { ]; description = "Shell command for grouping files by dates into folders"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "group-by-date"; + broken = true; }) {}; "group-theory" = callPackage @@ -121404,11 +121087,13 @@ self: { ({ mkDerivation, base, generic-data, groups }: mkDerivation { pname = "groups-generic"; - version = "0.2.0.0"; - sha256 = "0a13x4dc114qz5r97cpg2bbdch1kn6gfmndf9glqx2nbhx6qg654"; + version = "0.3.1.0"; + sha256 = "1v9mw478x6kfv38m13kypfmz9w8vn3xkvff3gy9g7x29aq5bvjfy"; libraryHaskellDepends = [ base generic-data groups ]; description = "Generically derive Group instances"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "grow-vector" = callPackage @@ -121428,6 +121113,8 @@ self: { testToolDepends = [ tasty-discover ]; description = "Mutable vector with efficient appends"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "growler" = callPackage @@ -121616,8 +121303,8 @@ self: { }: mkDerivation { pname = "gscholar-rss"; - version = "0.3.0.0"; - sha256 = "1hvmnzfh4qqbx41kih1py9hn9kxkribk8vfj0wx9i8v0sac5g87s"; + version = "0.3.0.2"; + sha256 = "0nxkn5irbijfrlmm7z9jyw6mahdwgmr42kmlzd7wzdfnz58dbqrr"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -121791,7 +121478,6 @@ self: { description = "GTFS RealTime protobafs library (autogenerated from .proto file)"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "gtk" = callPackage @@ -121974,16 +121660,16 @@ self: { }) {}; "gtk-traymanager" = callPackage - ({ mkDerivation, base, glib, gtk3, xlibsWrapper }: + ({ mkDerivation, base, glib, gtk3, libX11 }: mkDerivation { pname = "gtk-traymanager"; version = "1.0.1"; sha256 = "0vc1gwhg5l7l5iqb1i3zwd1bsy8fxsiwkwzza7j15zi07f97k7di"; libraryHaskellDepends = [ base glib gtk3 ]; - libraryPkgconfigDepends = [ xlibsWrapper ]; + libraryPkgconfigDepends = [ libX11 ]; description = "A wrapper around the eggtraymanager library for Linux system trays"; license = lib.licenses.lgpl21Only; - }) {inherit (pkgs) xlibsWrapper;}; + }) {inherit (pkgs.xorg) libX11;}; "gtk2hs-buildtools" = callPackage ({ mkDerivation, alex, array, base, Cabal, containers, directory @@ -122373,6 +122059,21 @@ self: { license = lib.licenses.gpl3Only; }) {}; + "gvti" = callPackage + ({ mkDerivation, base, directory, mmsyn3, process }: + mkDerivation { + pname = "gvti"; + version = "0.2.0.1"; + sha256 = "1bbkzp795h06xgsdfl5sssxi851l7h0ck8jfc5wdbqx9dpcv46x6"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base directory mmsyn3 process ]; + executableHaskellDepends = [ base directory mmsyn3 process ]; + description = "GraphViz Tabular Interface"; + license = lib.licenses.mit; + mainProgram = "gvti"; + }) {}; + "gw" = callPackage ({ mkDerivation, base, unix }: mkDerivation { @@ -122481,23 +122182,22 @@ self: { }) {}; "h-raylib" = callPackage - ({ mkDerivation, base, c, libGL, libX11, libXcursor, libXext, libXi + ({ mkDerivation, base, c, libGL, libX11, libXcursor, libXi , libXinerama, libXrandr }: mkDerivation { pname = "h-raylib"; - version = "4.5.0.3"; - sha256 = "05k7z23fkjdwlq379vcd9ahqch52hkwlpmy774xafrbh2wrfli3d"; + version = "4.5.0.9"; + sha256 = "0mlpdfvg8vqylkl64czzc4w397zi3fmm81jvax0l3chjg3bx5i02"; libraryHaskellDepends = [ base ]; librarySystemDepends = [ - c libGL libX11 libXcursor libXext libXi libXinerama libXrandr + c libGL libX11 libXcursor libXi libXinerama libXrandr ]; description = "Raylib bindings for Haskell"; license = lib.licenses.asl20; }) {c = null; inherit (pkgs) libGL; inherit (pkgs.xorg) libX11; - inherit (pkgs.xorg) libXcursor; inherit (pkgs.xorg) libXext; - inherit (pkgs.xorg) libXi; inherit (pkgs.xorg) libXinerama; - inherit (pkgs.xorg) libXrandr;}; + inherit (pkgs.xorg) libXcursor; inherit (pkgs.xorg) libXi; + inherit (pkgs.xorg) libXinerama; inherit (pkgs.xorg) libXrandr;}; "h-reversi" = callPackage ({ mkDerivation, base, blank-canvas, containers, hspec, QuickCheck @@ -122572,14 +122272,15 @@ self: { }: mkDerivation { pname = "hArduino"; - version = "1.1"; - sha256 = "1xpv4z6lgphq5cy1kz9navyrkx4p83bbvjc5dhlp948cd0fsn17b"; + version = "1.2"; + sha256 = "160k6p5spr6z06qrrgb6fyh8fjdjsywzs0jpnwf4yqfn7kaggqwh"; + revision = "1"; + editedCabalFile = "06jxrr2chksq9j5xd2ns5sbvmb5ispxpajlc1b5nkf39hi8brqxm"; libraryHaskellDepends = [ base bytestring containers mtl serialport time ]; description = "Control your Arduino board from Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hBDD" = callPackage @@ -122910,6 +122611,8 @@ self: { libraryHaskellDepends = [ attoparsec base bytestring ]; description = "haskell implementation of RESP (REdis Serialization Protocol)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hS3" = callPackage @@ -123225,6 +122928,7 @@ self: { libraryHaskellDepends = [ base bytestring cgi containers hack ]; description = "Allows programs written against MonadCGI to run with any hack handler. (deprecated)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hack-handler-cgi" = callPackage @@ -123307,7 +123011,6 @@ self: { description = "Hack Happstack server handler"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hack-handler-hyena" = callPackage @@ -123340,7 +123043,6 @@ self: { description = "Hack Kibro handler"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hack-handler-simpleserver" = callPackage @@ -123441,6 +123143,8 @@ self: { ]; description = "Hack2 contrib"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hack2-contrib-extra" = callPackage @@ -123459,6 +123163,7 @@ self: { ]; description = "Hack2 contrib extra"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hack2-handler-happstack-server" = callPackage @@ -123625,7 +123330,7 @@ self: { ]; description = "Access cabal-install's Hackage database via Data.Map"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.sternenseemann ]; }) {}; "hackage-diff" = callPackage @@ -123679,6 +123384,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "hackage-mirror"; + broken = true; }) {}; "hackage-plot" = callPackage @@ -123762,9 +123468,7 @@ self: { ]; description = "Manage secure file-based package repositories"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hackage-repo-tool"; - broken = true; }) {}; "hackage-security" = callPackage @@ -123777,10 +123481,8 @@ self: { }: mkDerivation { pname = "hackage-security"; - version = "0.6.2.2"; - sha256 = "0xmjw3frssdv3glhdg3yivdy38h5icz6xywngrahc19220ba6cx8"; - revision = "1"; - editedCabalFile = "01fhp3kzc1wfvixzgnz4y52bzm4sickk1cj7pksrwmbi90dghv0s"; + version = "0.6.2.3"; + sha256 = "0rm0avcc1k247qbrajhzi3vz92cgcc4nr3kbhhfmfm8rjxv0bvjj"; libraryHaskellDepends = [ base base16-bytestring base64-bytestring bytestring Cabal Cabal-syntax containers cryptohash-sha256 directory ed25519 @@ -124013,7 +123715,7 @@ self: { "hackport" = callPackage ({ mkDerivation, array, async, base, base16-bytestring - , base64-bytestring, binary, bytestring, containers + , base64-bytestring, binary, bytestring, cabal-install, containers , cryptohash-sha256, deepseq, directory, doctest, echo, ed25519 , edit-distance, extensible-exceptions, filepath, ghc-prim , hashable, hspec, hspec-discover, HTTP, lifted-base, monad-control @@ -124024,8 +123726,8 @@ self: { }: mkDerivation { pname = "hackport"; - version = "0.7.3.0"; - sha256 = "0166ybpnb0ajp2afgi70lwwmkwbbgavj8mfpcksyaysbpa6zpl4m"; + version = "0.7.3.1"; + sha256 = "1wfsl5ybbmxvj29hr39xp35fqyairm3mkb1q7xad8i2xmn76rvmp"; isLibrary = false; isExecutable = true; libraryHaskellDepends = [ @@ -124046,7 +123748,7 @@ self: { extensible-exceptions filepath hspec network-uri parallel parsec pretty process QuickCheck split text time xml ]; - testToolDepends = [ doctest hspec-discover ]; + testToolDepends = [ cabal-install doctest hspec-discover ]; doHaddock = false; description = "Hackage and Portage integration tool"; license = lib.licenses.gpl3Plus; @@ -124408,6 +124110,8 @@ self: { testToolDepends = [ hspec-discover ]; description = "A simple Hadoop streaming library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hadoop-tools" = callPackage @@ -125331,33 +125035,6 @@ self: { }) {}; "hal" = callPackage - ({ mkDerivation, aeson, base, base64-bytestring, bytestring - , case-insensitive, conduit, conduit-extra, containers, envy - , exceptions, hashable, hedgehog, hspec, hspec-hedgehog - , http-client, http-types, mtl, raw-strings-qq, scientific, text - , time, transformers, unordered-containers, vector - }: - mkDerivation { - pname = "hal"; - version = "0.4.10.1"; - sha256 = "1mxlyx0zxvklrybasx8p6di72aw431mbbyj06pb91570j9c46fp0"; - revision = "2"; - editedCabalFile = "143z15p6skr333f1vazhy5hn7rirpkn8zdfh3fzhz311ws7m7lg8"; - libraryHaskellDepends = [ - aeson base base64-bytestring bytestring case-insensitive conduit - conduit-extra containers envy exceptions hashable http-client - http-types mtl scientific text time unordered-containers - ]; - testHaskellDepends = [ - aeson base base64-bytestring bytestring case-insensitive containers - hedgehog hspec hspec-hedgehog http-client http-types raw-strings-qq - scientific text time transformers unordered-containers vector - ]; - description = "A runtime environment for Haskell applications running on AWS Lambda"; - license = lib.licenses.bsd3; - }) {}; - - "hal_1_0_0_1" = callPackage ({ mkDerivation, aeson, base, base64-bytestring, bytestring , case-insensitive, conduit, conduit-extra, containers, exceptions , hashable, hedgehog, hspec, hspec-hedgehog, http-client @@ -125380,7 +125057,6 @@ self: { ]; description = "A runtime environment for Haskell applications running on AWS Lambda"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "halberd" = callPackage @@ -125630,6 +125306,8 @@ self: { testHaskellDepends = [ base hedgehog lens ]; description = "Split or combine data structures to and from halves, quarters, eighths"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "halvm-web" = callPackage @@ -125679,6 +125357,7 @@ self: { license = "GPL"; hydraPlatforms = lib.platforms.none; mainProgram = "hamlog"; + broken = true; }) {}; "hamid" = callPackage @@ -125715,6 +125394,7 @@ self: { ]; description = "Physics on generalized coordinate systems using Hamiltonian Mechanics and AD"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hamilton-examples"; }) {}; @@ -126386,7 +126066,6 @@ self: { ]; description = "Happstack Authentication Library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "happstack-clientsession" = callPackage @@ -126506,6 +126185,7 @@ self: { ]; description = "Happstack extension for use with FastCGI"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "happstack-fay" = callPackage @@ -126679,7 +126359,6 @@ self: { ]; description = "Support for using JMacro with Happstack"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "happstack-lite" = callPackage @@ -126903,6 +126582,7 @@ self: { description = "Utilities for using YUI3 with Happstack"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "happy_1_19_12" = callPackage @@ -126969,6 +126649,8 @@ self: { libraryHaskellDepends = [ base Chart Chart-diagrams ]; description = "Generate simple okay-looking bar plots without much effort"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "happy-meta" = callPackage @@ -127148,6 +126830,8 @@ self: { ]; description = "Deep embedding of hardware descriptions with code generation"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "harfbuzz-pure" = callPackage @@ -127366,6 +127050,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "This library 'Has' transformers"; license = lib.licenses.mit; + maintainers = [ lib.maintainers.turion ]; }) {}; "hasbolt" = callPackage @@ -127391,6 +127076,8 @@ self: { ]; description = "Haskell driver for Neo4j 3+ (BOLT protocol)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hasbolt-extras" = callPackage @@ -127416,6 +127103,7 @@ self: { testHaskellDepends = [ base doctest ]; description = "Extras for hasbolt library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "example"; }) {}; @@ -127497,7 +127185,9 @@ self: { ]; description = "A TUI for reviewing notes using 'flashcards' written with markdown-like syntax"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hascard"; + broken = true; }) {}; "hascas" = callPackage @@ -127662,10 +127352,8 @@ self: { }: mkDerivation { pname = "hashable"; - version = "1.3.5.0"; - sha256 = "11lqw6xbjzc1gpn4qlrqzq9kjgaw5pr7dgmx2rq1j6r7shndiams"; - revision = "1"; - editedCabalFile = "1mwilvbc5f4myxz4vj95kx6cqqn7nfjy99v8cmqdxy90napywars"; + version = "1.4.1.0"; + sha256 = "11sycr73821amdz8g0k8c97igi4z7f9xdvgaxlkxhsp6h310bcz1"; libraryHaskellDepends = [ base bytestring containers deepseq ghc-bignum ghc-prim text ]; @@ -127677,29 +127365,6 @@ self: { license = lib.licenses.bsd3; }) {}; - "hashable_1_4_1_0" = callPackage - ({ mkDerivation, base, base-orphans, bytestring, containers - , deepseq, ghc-bignum, ghc-prim, HUnit, QuickCheck, random - , test-framework, test-framework-hunit, test-framework-quickcheck2 - , text, unix - }: - mkDerivation { - pname = "hashable"; - version = "1.4.1.0"; - sha256 = "11sycr73821amdz8g0k8c97igi4z7f9xdvgaxlkxhsp6h310bcz1"; - libraryHaskellDepends = [ - base base-orphans bytestring containers deepseq ghc-bignum ghc-prim - text - ]; - testHaskellDepends = [ - base bytestring ghc-prim HUnit QuickCheck random test-framework - test-framework-hunit test-framework-quickcheck2 text unix - ]; - description = "A class for types that can be converted to a hash value"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - }) {}; - "hashable-accelerate" = callPackage ({ mkDerivation, accelerate, base, template-haskell }: mkDerivation { @@ -127762,8 +127427,6 @@ self: { libraryHaskellDepends = [ base hashable sorted-list time-compat ]; description = "Provides instances missing from Hashable"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hashable-time" = callPackage @@ -127824,8 +127487,8 @@ self: { }: mkDerivation { pname = "hashes"; - version = "0.2.2.1"; - sha256 = "0ni9z93k89nsswzs4xmb78l7cq7142mg841b70lxgbf69i1wd8z8"; + version = "0.2.3"; + sha256 = "12j5wf6q6fzpc5wnln0b9jf5banamdj2hlsrkiid7i0b85z9vcvg"; libraryHaskellDepends = [ base bytestring ]; librarySystemDepends = [ openssl ]; testHaskellDepends = [ @@ -127871,10 +127534,8 @@ self: { }: mkDerivation { pname = "hashing"; - version = "0.1.0.1"; - sha256 = "044lyj8kyhrm8xs1v3z60g9zh8wdc1nvf79qvans1w6ndjfa3975"; - revision = "2"; - editedCabalFile = "1rwl68jiivw7f2f5cg73sr3dawlbmklnwyiwivrcsihrg4b1z1lq"; + version = "0.1.1.0"; + sha256 = "1a3ws6dlmm9gfpcipq2kx7mzbr0kn3faq2cfnavqdxy18ipvxnbi"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ array base bytestring ]; @@ -127977,27 +127638,6 @@ self: { }) {}; "hashtables" = callPackage - ({ mkDerivation, base, ghc-prim, hashable, HUnit, mwc-random - , primitive, QuickCheck, test-framework, test-framework-hunit - , test-framework-quickcheck2, vector - }: - mkDerivation { - pname = "hashtables"; - version = "1.2.4.2"; - sha256 = "1z3h2h0wbiwzj9zs17bggynzgqa77gxcj8h4x28dq3sha81j5rx8"; - libraryHaskellDepends = [ - base ghc-prim hashable primitive vector - ]; - testHaskellDepends = [ - base ghc-prim hashable HUnit mwc-random primitive QuickCheck - test-framework test-framework-hunit test-framework-quickcheck2 - vector - ]; - description = "Mutable hash tables in the ST monad"; - license = lib.licenses.bsd3; - }) {}; - - "hashtables_1_3_1" = callPackage ({ mkDerivation, base, ghc-prim, hashable, HUnit, mwc-random , primitive, QuickCheck, test-framework, test-framework-hunit , test-framework-quickcheck2, vector @@ -128016,7 +127656,6 @@ self: { ]; description = "Mutable hash tables in the ST monad"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hashtables-plus" = callPackage @@ -128275,8 +127914,8 @@ self: { pname = "haskeline"; version = "0.8.2"; sha256 = "1pr7zik1138cj0463867i1qqb2bgsq716mryap18jx7zb9f1b7gc"; - revision = "2"; - editedCabalFile = "0ylww688l5nfgjw4z5clvr3pmm65axbsq06fg8rpbd2iqzsaz01s"; + revision = "3"; + editedCabalFile = "101qavk0fmc4c6qa307kswz3345psskxqyxhk6hmykynjm05jjrv"; configureFlags = [ "-fterminfo" ]; isLibrary = true; isExecutable = true; @@ -128374,6 +128013,7 @@ self: { ]; description = "Remote Management Platform for Haskell Applications"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "haskell-admin-core" = callPackage @@ -128395,6 +128035,8 @@ self: { ]; description = "Core Modules of Haskell Admin"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haskell-admin-health" = callPackage @@ -128414,6 +128056,7 @@ self: { ]; description = "Application Health Component for Haskell Admin"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "haskell-admin-managed-functions" = callPackage @@ -128435,6 +128078,7 @@ self: { ]; description = "Managed Functions integration for Haskell Admin"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "haskell-aliyun" = callPackage @@ -128506,6 +128150,8 @@ self: { testHaskellDepends = [ base bytestring QuickCheck random ]; description = "A bcrypt implementation for haskell"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haskell-bitmex-client" = callPackage @@ -128655,8 +128301,6 @@ self: { libraryHaskellDepends = [ base process ]; description = "Simple CoffeeScript API"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "haskell-compression" = callPackage @@ -128715,8 +128359,8 @@ self: { ({ mkDerivation, base, containers }: mkDerivation { pname = "haskell-dap"; - version = "0.0.15.0"; - sha256 = "1wk6813pwwnph7w1waci9q6r0glsjpayk27kr43zddwd2v0abcld"; + version = "0.0.16.0"; + sha256 = "091jy2dcci8a5sasgrnw26gbbii26p8gg62i1w2ih71rirkdi2r6"; libraryHaskellDepends = [ base containers ]; description = "Haskell implementation of the DAP interface data"; license = lib.licenses.bsd3; @@ -128731,8 +128375,8 @@ self: { }: mkDerivation { pname = "haskell-debug-adapter"; - version = "0.0.37.0"; - sha256 = "1srinycpz3zb86r6b1kyn0ikc8hd62vzgig9ki0lddrxjxc637gg"; + version = "0.0.38.0"; + sha256 = "14qqxyrj31j5jm3q467msl76srx0nvhpid9zjqy6qqq8bf7klhrm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -128800,6 +128444,45 @@ self: { mainProgram = "haskell-docs"; }) {}; + "haskell-docs-cli" = callPackage + ({ mkDerivation, aeson, ansi-wl-pprint, async, base, bytestring + , containers, directory, exceptions, extra, filepath, hashable + , haskeline, hoogle, html-conduit, http-client, http-client-tls + , http-types, mtl, network-uri, optparse-applicative, process + , temporary, terminal-size, text, time, transformers, xml-conduit + }: + mkDerivation { + pname = "haskell-docs-cli"; + version = "1.0.0.0"; + sha256 = "0rz2lgkwddq6q74iscj1268agfrkx6cslpx4w9hs9dcrsifrg7f1"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson ansi-wl-pprint async base bytestring containers directory + exceptions extra filepath hashable haskeline hoogle html-conduit + http-client http-client-tls http-types mtl network-uri + optparse-applicative process temporary terminal-size text time + transformers xml-conduit + ]; + executableHaskellDepends = [ + aeson ansi-wl-pprint async base bytestring containers directory + exceptions extra filepath hashable haskeline hoogle html-conduit + http-client http-client-tls http-types mtl network-uri + optparse-applicative process temporary terminal-size text time + transformers xml-conduit + ]; + testHaskellDepends = [ + aeson ansi-wl-pprint async base bytestring containers directory + exceptions extra filepath hashable haskeline hoogle html-conduit + http-client http-client-tls http-types mtl network-uri + optparse-applicative process temporary terminal-size text time + transformers xml-conduit + ]; + description = "Search Hoogle and navigate Hackage from the command line"; + license = lib.licenses.bsd3; + mainProgram = "hdc"; + }) {}; + "haskell-eigen-util" = callPackage ({ mkDerivation, base, eigen, vector }: mkDerivation { @@ -129121,12 +128804,11 @@ self: { , hls-code-range-plugin, hls-eval-plugin , hls-explicit-fixity-plugin, hls-explicit-imports-plugin , hls-floskell-plugin, hls-fourmolu-plugin, hls-gadt-plugin - , hls-graph, hls-haddock-comments-plugin, hls-hlint-plugin - , hls-module-name-plugin, hls-ormolu-plugin, hls-plugin-api - , hls-pragmas-plugin, hls-qualify-imported-names-plugin - , hls-refactor-plugin, hls-refine-imports-plugin, hls-rename-plugin - , hls-retrie-plugin, hls-splice-plugin, hls-stylish-haskell-plugin - , hls-tactics-plugin, hls-test-utils, hp2pretty, hslogger + , hls-graph, hls-hlint-plugin, hls-module-name-plugin + , hls-ormolu-plugin, hls-plugin-api, hls-pragmas-plugin + , hls-qualify-imported-names-plugin, hls-refactor-plugin + , hls-refine-imports-plugin, hls-rename-plugin, hls-retrie-plugin + , hls-stylish-haskell-plugin, hls-test-utils, hp2pretty, hslogger , hspec-expectations, implicit-hie, lens, lens-aeson, lsp, lsp-test , lsp-types, mtl, optparse-applicative, optparse-simple , prettyprinter, process, regex-tdfa, safe-exceptions, shake @@ -129147,11 +128829,10 @@ self: { hls-class-plugin hls-code-range-plugin hls-eval-plugin hls-explicit-fixity-plugin hls-explicit-imports-plugin hls-floskell-plugin hls-fourmolu-plugin hls-gadt-plugin hls-graph - hls-haddock-comments-plugin hls-hlint-plugin hls-module-name-plugin - hls-ormolu-plugin hls-plugin-api hls-pragmas-plugin - hls-qualify-imported-names-plugin hls-refactor-plugin - hls-refine-imports-plugin hls-rename-plugin hls-retrie-plugin - hls-splice-plugin hls-stylish-haskell-plugin hls-tactics-plugin lsp + hls-hlint-plugin hls-module-name-plugin hls-ormolu-plugin + hls-plugin-api hls-pragmas-plugin hls-qualify-imported-names-plugin + hls-refactor-plugin hls-refine-imports-plugin hls-rename-plugin + hls-retrie-plugin hls-stylish-haskell-plugin lsp optparse-applicative optparse-simple prettyprinter process safe-exceptions sqlite-simple text unordered-containers ]; @@ -129223,7 +128904,6 @@ self: { description = "Haskell library for the Microsoft Language Server Protocol"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "haskell-lsp-client" = callPackage @@ -129265,6 +128945,8 @@ self: { ]; description = "Haskell library for the Microsoft Language Server Protocol, data types"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haskell-menu" = callPackage @@ -130455,6 +130137,7 @@ self: { executableToolDepends = [ hspec-discover ]; description = "Haskell XMPP (eXtensible Message Passing Protocol, a.k.a. Jabber) library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "haskell-xmpp-io-test"; }) {}; @@ -131295,8 +130978,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Bitcoin & Bitcoin Cash library for Haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "haskoin-crypto" = callPackage @@ -131351,7 +131032,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "P2P library for Bitcoin and Bitcoin Cash"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "haskoin-protocol" = callPackage @@ -131482,7 +131162,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Data for Haskoin Store"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "haskoin-util" = callPackage @@ -131550,6 +131229,7 @@ self: { description = "Implementation of a Bitcoin SPV Wallet with BIP32 and multisig support"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haskoon" = callPackage @@ -132056,7 +131736,6 @@ self: { description = "Haskus binary format manipulation"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "haskus-system-build" = callPackage @@ -132076,6 +131755,7 @@ self: { ]; description = "Haskus system build tool"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "haskus-system-build"; }) {}; @@ -132099,6 +131779,7 @@ self: { ]; description = "Haskus utility modules"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "haskus-utils-compat" = callPackage @@ -132167,6 +131848,8 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq QuickCheck ]; description = "Variant and EADT"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haskus-web" = callPackage @@ -132289,21 +131972,20 @@ self: { }) {}; "haspara" = callPackage - ({ mkDerivation, aeson, base, containers, doctest, exceptions - , hashable, megaparsec, mtl, refined, safe-decimal, scientific - , template-haskell, text, time + ({ mkDerivation, aeson, base, containers, data-default, doctest + , exceptions, hashable, hspec, megaparsec, mtl, refined + , safe-decimal, scientific, template-haskell, text, time }: mkDerivation { pname = "haspara"; - version = "0.0.0.5"; - sha256 = "1y1zgsr2ba8m8rjwias1xqx61p1g081pxxwaas14blq5ijcp9ivz"; + version = "0.0.0.8"; + sha256 = "1yvzzkv0hbki5a5rp6md2kllrslafb26lkz4i9hfydllxqgrm0is"; libraryHaskellDepends = [ - aeson base containers exceptions hashable megaparsec mtl refined - safe-decimal scientific template-haskell text time + aeson base containers data-default exceptions hashable megaparsec + mtl refined safe-decimal scientific template-haskell text time ]; testHaskellDepends = [ - aeson base containers doctest exceptions hashable megaparsec mtl - refined safe-decimal scientific template-haskell text time + base containers data-default doctest hspec time ]; description = "A library providing definitions to work with monetary values"; license = lib.licenses.mit; @@ -132321,6 +132003,7 @@ self: { description = "This package enables to write SPARQL queries to remote endpoints"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haspell" = callPackage @@ -132336,32 +132019,6 @@ self: { }) {inherit (pkgs) aspell;}; "hasql" = callPackage - ({ mkDerivation, attoparsec, base, bytestring - , bytestring-strict-builder, contravariant, contravariant-extras - , dlist, gauge, hashable, hashtables, mtl, postgresql-binary - , postgresql-libpq, profunctors, QuickCheck, quickcheck-instances - , rerebase, tasty, tasty-hunit, tasty-quickcheck, text - , text-builder, transformers, vector - }: - mkDerivation { - pname = "hasql"; - version = "1.5.1"; - sha256 = "1g9hbn9saf17a9jxjkm4bak7xbjgq0nf8khv5djfkyz1yxmw4l6p"; - libraryHaskellDepends = [ - attoparsec base bytestring bytestring-strict-builder contravariant - dlist hashable hashtables mtl postgresql-binary postgresql-libpq - profunctors text text-builder transformers vector - ]; - testHaskellDepends = [ - contravariant-extras QuickCheck quickcheck-instances rerebase tasty - tasty-hunit tasty-quickcheck - ]; - benchmarkHaskellDepends = [ gauge rerebase ]; - description = "An efficient PostgreSQL driver with a flexible mapping API"; - license = lib.licenses.mit; - }) {}; - - "hasql_1_6_2" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring , bytestring-strict-builder, contravariant, contravariant-extras , dlist, gauge, hashable, hashtables, mtl, network-ip @@ -132372,8 +132029,8 @@ self: { }: mkDerivation { pname = "hasql"; - version = "1.6.2"; - sha256 = "1ph1di36lhhi2y542cc5mm0pprq1j6yb2i69bwms59173amh8gcx"; + version = "1.6.3"; + sha256 = "04d4pa248pffqsj032m69wkv11cn0mdfc21qfygk3dcb1yfh0nnj"; libraryHaskellDepends = [ aeson attoparsec base bytestring bytestring-strict-builder contravariant dlist hashable hashtables mtl network-ip @@ -132387,7 +132044,6 @@ self: { benchmarkHaskellDepends = [ gauge rerebase ]; description = "An efficient PostgreSQL driver with a flexible mapping API"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hasql-backend" = callPackage @@ -132475,26 +132131,6 @@ self: { }) {}; "hasql-dynamic-statements" = callPackage - ({ mkDerivation, base, bytestring, containers, hasql - , hasql-implicits, ptr, QuickCheck, quickcheck-instances, rerebase - , tasty, tasty-hunit, tasty-quickcheck - }: - mkDerivation { - pname = "hasql-dynamic-statements"; - version = "0.3.1.1"; - sha256 = "1bc7l6l6ss9grgphnb0sks08v0wx0aalja4rkjzp49p5m6g82rc6"; - libraryHaskellDepends = [ - base bytestring containers hasql hasql-implicits ptr - ]; - testHaskellDepends = [ - hasql QuickCheck quickcheck-instances rerebase tasty tasty-hunit - tasty-quickcheck - ]; - description = "Toolkit for constructing Hasql statements dynamically"; - license = lib.licenses.mit; - }) {}; - - "hasql-dynamic-statements_0_3_1_2" = callPackage ({ mkDerivation, base, bytestring, containers, hasql , hasql-implicits, ptr, QuickCheck, quickcheck-instances, rerebase , tasty, tasty-hunit, tasty-quickcheck @@ -132512,7 +132148,6 @@ self: { ]; description = "Toolkit for constructing Hasql statements dynamically"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hasql-explain-tests" = callPackage @@ -132589,6 +132224,8 @@ self: { ]; description = "QuasiQuoter that supports expression interpolation for hasql"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hasql-migration" = callPackage @@ -132632,21 +132269,6 @@ self: { }) {}; "hasql-optparse-applicative" = callPackage - ({ mkDerivation, base-prelude, hasql, hasql-pool - , optparse-applicative - }: - mkDerivation { - pname = "hasql-optparse-applicative"; - version = "0.3.0.9"; - sha256 = "1m4z82l3ip50ly160ccjl46npxp1170knaf5acjdwhirsc6c3qpd"; - libraryHaskellDepends = [ - base-prelude hasql hasql-pool optparse-applicative - ]; - description = "\"optparse-applicative\" parsers for \"hasql\""; - license = lib.licenses.mit; - }) {}; - - "hasql-optparse-applicative_0_5" = callPackage ({ mkDerivation, base-prelude, hasql, hasql-pool , optparse-applicative }: @@ -132659,7 +132281,6 @@ self: { ]; description = "\"optparse-applicative\" parsers for \"hasql\""; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hasql-pipes" = callPackage @@ -132678,18 +132299,6 @@ self: { }) {}; "hasql-pool" = callPackage - ({ mkDerivation, base-prelude, hasql, hspec, resource-pool, time }: - mkDerivation { - pname = "hasql-pool"; - version = "0.5.2.2"; - sha256 = "0sr8ifvkyd5g7ajaqd7bbqgfpnpkazv7fbq5ix07h94kdf1idqq5"; - libraryHaskellDepends = [ base-prelude hasql resource-pool time ]; - testHaskellDepends = [ base-prelude hasql hspec ]; - description = "A pool of connections for Hasql"; - license = lib.licenses.mit; - }) {}; - - "hasql-pool_0_8_0_6" = callPackage ({ mkDerivation, async, base, hasql, hspec, rerebase, stm , transformers }: @@ -132701,7 +132310,6 @@ self: { testHaskellDepends = [ async hasql hspec rerebase stm ]; description = "Pool of connections for Hasql"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hasql-postgres" = callPackage @@ -132852,6 +132460,7 @@ self: { description = "Stream Hasql queries"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hasql-streams-example" = callPackage @@ -132878,7 +132487,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "hasql-streaming"; - broken = true; }) {}; "hasql-streams-pipes" = callPackage @@ -132939,8 +132547,8 @@ self: { }: mkDerivation { pname = "hasql-th"; - version = "0.4.0.17"; - sha256 = "1s4ra8i4az6kik4ahfg3h0rzyz54fifn0dkabfpfxalg1ap5y7ic"; + version = "0.4.0.18"; + sha256 = "0z88skdk0i6rnwdqpy06yrhandaldll468kbkd4ilcf7fbwwk06v"; libraryHaskellDepends = [ base bytestring containers contravariant foldl hasql postgresql-syntax template-haskell template-haskell-compat-v0208 @@ -132951,24 +132559,6 @@ self: { }) {}; "hasql-transaction" = callPackage - ({ mkDerivation, async, base, bytestring, bytestring-tree-builder - , contravariant, contravariant-extras, hasql, mtl, rerebase - , transformers - }: - mkDerivation { - pname = "hasql-transaction"; - version = "1.0.1.1"; - sha256 = "0ajk7g9sk83sig2bkfajxpwasqrswxr0f82mxzwfy9j08z3ks235"; - libraryHaskellDepends = [ - base bytestring bytestring-tree-builder contravariant - contravariant-extras hasql mtl transformers - ]; - testHaskellDepends = [ async contravariant-extras hasql rerebase ]; - description = "Composable abstraction over retryable transactions for Hasql"; - license = lib.licenses.mit; - }) {}; - - "hasql-transaction_1_0_1_2" = callPackage ({ mkDerivation, async, base, bytestring, bytestring-tree-builder , contravariant, contravariant-extras, hasql, mtl, rerebase , transformers @@ -132984,7 +132574,6 @@ self: { testHaskellDepends = [ async contravariant-extras hasql rerebase ]; description = "Composable abstraction over retryable transactions for Hasql"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hasql-transaction-io" = callPackage @@ -133001,8 +132590,6 @@ self: { ]; description = "Perform IO actions during transactions for Hasql"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hasql-url" = callPackage @@ -133019,6 +132606,8 @@ self: { testHaskellDepends = [ base hasql tasty tasty-quickcheck ]; description = "Parse PostgreSQL connection URI into Hasql.Connection Settings"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hasqlator-mysql" = callPackage @@ -133582,6 +133171,8 @@ self: { ]; description = "A Haskell library for efficient, concurrent, and concise data access"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "haxl-amazonka" = callPackage @@ -133622,7 +133213,6 @@ self: { description = "An example Haxl data source for accessing the Facebook Graph API"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "haxparse" = callPackage @@ -133760,7 +133350,9 @@ self: { description = "A command line tool to compute BLAKE3 hashes"; license = lib.licenses.agpl3Only; badPlatforms = [ "aarch64-linux" ]; + hydraPlatforms = lib.platforms.none; mainProgram = "hb3sum"; + broken = true; }) {}; "hback" = callPackage @@ -134083,8 +133675,8 @@ self: { ({ mkDerivation, base, containers, indexed-traversable }: mkDerivation { pname = "hcdt"; - version = "0.1.0.3"; - sha256 = "0km3qh4h0iy1x09qvi112y8jj2vqln6yraqyqd1yls3xn0q1ga25"; + version = "0.1.0.5"; + sha256 = "18hd8x7g615cgafgni27x914kqvashdicd1alaj02mha4jl0380a"; libraryHaskellDepends = [ base containers indexed-traversable ]; description = "2d Delaunay triangulation"; license = lib.licenses.bsd3; @@ -134253,6 +133845,8 @@ self: { ]; description = "An implementation of the Consistent Overhead Byte Stuffing algorithm"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hcom" = callPackage @@ -134590,7 +134184,6 @@ self: { description = "HDF: Uniform Rate Audio Signal Processing in Haskell"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hdf5" = callPackage @@ -134683,7 +134276,6 @@ self: { description = "Server-side HTTP Digest (RFC2617) in the CGI monad"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hdirect" = callPackage @@ -134936,7 +134528,9 @@ self: { testToolDepends = [ hspec-discover ]; description = "License Header Manager"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "headroom"; + broken = true; }) {}; "heap" = callPackage @@ -135306,7 +134900,7 @@ self: { }) {}; "hedgehog" = callPackage - ({ mkDerivation, ansi-terminal, async, base, bytestring + ({ mkDerivation, ansi-terminal, async, barbies, base, bytestring , concurrent-output, containers, deepseq, directory, erf , exceptions, lifted-async, mmorph, monad-control, mtl, pretty-show , primitive, random, resourcet, stm, template-haskell, text, time @@ -135314,15 +134908,14 @@ self: { }: mkDerivation { pname = "hedgehog"; - version = "1.0.5"; - sha256 = "1qsqs8lmxa3wmw228cwi98vvvh9hqbc9d43i1sy2c9igw9xlhfi6"; - revision = "2"; - editedCabalFile = "1p6vixwflgz2y1fc94kqxiv8s5jvq63xhp56cqwpw2s7d7g5chx1"; + version = "1.1.2"; + sha256 = "0dbk75hk6hqpzkjdlpw3s63qhm42kqigij33p321by6xndb59jg1"; libraryHaskellDepends = [ - ansi-terminal async base bytestring concurrent-output containers - deepseq directory erf exceptions lifted-async mmorph monad-control - mtl pretty-show primitive random resourcet stm template-haskell - text time transformers transformers-base wl-pprint-annotated + ansi-terminal async barbies base bytestring concurrent-output + containers deepseq directory erf exceptions lifted-async mmorph + monad-control mtl pretty-show primitive random resourcet stm + template-haskell text time transformers transformers-base + wl-pprint-annotated ]; testHaskellDepends = [ base containers mmorph mtl pretty-show text transformers @@ -135410,6 +135003,27 @@ self: { license = lib.licenses.bsd3; }) {}; + "hedgehog-classes_0_2_5_4" = callPackage + ({ mkDerivation, aeson, base, binary, comonad, containers, hedgehog + , pretty-show, primitive, semirings, silently, transformers, vector + , wl-pprint-annotated + }: + mkDerivation { + pname = "hedgehog-classes"; + version = "0.2.5.4"; + sha256 = "0z9ik5asddc2pnz430jsi1pyahkh6jy36ng0vwm7ywcq7cvhcvlz"; + libraryHaskellDepends = [ + aeson base binary comonad containers hedgehog pretty-show primitive + semirings silently transformers vector wl-pprint-annotated + ]; + testHaskellDepends = [ + aeson base binary comonad containers hedgehog vector + ]; + description = "Hedgehog will eat your typeclass bugs"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "hedgehog-corpus" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -135463,6 +135077,8 @@ self: { ]; description = "Customizable Gen for ADT using Generics"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hedgehog-gen-json" = callPackage @@ -135531,8 +135147,6 @@ self: { libraryHaskellDepends = [ base hedgehog lens ]; description = "Hedgehog properties for lens laws"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hedgehog-optics" = callPackage @@ -135790,8 +135404,8 @@ self: { }: mkDerivation { pname = "hegg"; - version = "0.2.0.0"; - sha256 = "124rdj3lmssn57gy3nffinyg1p03wd3w672v7l2aa8gzrpan20cg"; + version = "0.3.0.0"; + sha256 = "08hprlz70vxv759fr15hb95p7fj6qmnahjxvalj3db9rw5xqs4ia"; libraryHaskellDepends = [ base containers transformers ]; testHaskellDepends = [ base containers deriving-compat tasty tasty-hunit tasty-quickcheck @@ -135856,39 +135470,38 @@ self: { ({ mkDerivation, aeson, attoparsec, base, bifunctors, blaze-builder , blaze-html, bytestring, containers, criterion , criterion-measurement, directory, directory-tree, dlist, filepath - , hashable, HUnit, lens, lifted-base, map-syntax, monad-control - , mtl, process, QuickCheck, random, statistics, test-framework - , test-framework-hunit, test-framework-quickcheck2, text, time - , transformers, transformers-base, unordered-containers, vector - , xmlhtml + , hashable, HUnit, indexed-traversable, lens, lifted-base + , map-syntax, monad-control, mtl, process, QuickCheck, random + , statistics, test-framework, test-framework-hunit + , test-framework-quickcheck2, text, time, transformers + , transformers-base, unordered-containers, vector, xmlhtml }: mkDerivation { pname = "heist"; - version = "1.1.0.1"; - sha256 = "1j4h9fwny4hl2m5lgsd257lvm9057fb0hmnaqjw8a9k4hyx7hmqq"; - revision = "4"; - editedCabalFile = "1jwdn5l0iwcrbramfs6h60w0i6hgp2ixii89db8b0xvcbyb8h4hj"; + version = "1.1.1.0"; + sha256 = "17ba0jmzs4wk4303ydcr1p2k2kcjfs11mrhlglaz40z61z3vm1yl"; libraryHaskellDepends = [ aeson attoparsec base blaze-builder blaze-html bytestring containers directory directory-tree dlist filepath hashable - lifted-base map-syntax monad-control mtl process random text time - transformers transformers-base unordered-containers vector xmlhtml + indexed-traversable lifted-base map-syntax monad-control mtl + process random text time transformers transformers-base + unordered-containers vector xmlhtml ]; testHaskellDepends = [ aeson attoparsec base bifunctors blaze-builder blaze-html bytestring containers directory directory-tree dlist filepath - hashable HUnit lens lifted-base map-syntax monad-control mtl - process QuickCheck random test-framework test-framework-hunit - test-framework-quickcheck2 text time transformers transformers-base - unordered-containers vector xmlhtml + hashable HUnit indexed-traversable lens lifted-base map-syntax + monad-control mtl process QuickCheck random test-framework + test-framework-hunit test-framework-quickcheck2 text time + transformers transformers-base unordered-containers vector xmlhtml ]; benchmarkHaskellDepends = [ aeson attoparsec base blaze-builder blaze-html bytestring containers criterion criterion-measurement directory directory-tree - dlist filepath hashable HUnit lifted-base map-syntax monad-control - mtl process random statistics test-framework test-framework-hunit - text time transformers transformers-base unordered-containers - vector xmlhtml + dlist filepath hashable HUnit indexed-traversable lifted-base + map-syntax monad-control mtl process random statistics + test-framework test-framework-hunit text time transformers + transformers-base unordered-containers vector xmlhtml ]; description = "An Haskell template system supporting both HTML5 and XML"; license = lib.licenses.bsd3; @@ -135909,6 +135522,7 @@ self: { description = "Use JSON directly from Heist templates"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "heist-async" = callPackage @@ -135965,19 +135579,21 @@ self: { ]; description = "An Haskell template system supporting both HTML5 and XML"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "heist-extra" = callPackage - ({ mkDerivation, base, data-default, filepath, heist-emanote - , map-syntax, mtl, pandoc-types, relude, xmlhtml + ({ mkDerivation, base, data-default, filepath, heist, map-syntax + , mtl, pandoc-types, relude, xmlhtml }: mkDerivation { pname = "heist-extra"; - version = "0.1.0.0"; - sha256 = "175bch1045r69xqzaxh3fhlii2yn5wcwpifk0m5qw9520pbrg4rs"; + version = "0.2.0.0"; + sha256 = "0rjlnj6ja7wfck1cpkfl9hh17kn0ghal8g4j8dh2dfzm6bnprqmk"; libraryHaskellDepends = [ - base data-default filepath heist-emanote map-syntax mtl - pandoc-types relude xmlhtml + base data-default filepath heist map-syntax mtl pandoc-types relude + xmlhtml ]; description = "Extra heist functionality"; license = lib.licenses.mit; @@ -136191,7 +135807,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "hell"; - broken = true; }) {}; "hellage" = callPackage @@ -136468,8 +136083,8 @@ self: { }: mkDerivation { pname = "hercules-ci-agent"; - version = "0.9.7"; - sha256 = "1pgzgmjc025n9if2hq84i4d9syrz7fskzvyy5ilz4h49vqnjngcq"; + version = "0.9.9"; + sha256 = "1havsghzsbicixb8cya0v1694l7r9n2frnmy297ar3chblfj8hgl"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -136555,8 +136170,8 @@ self: { }: mkDerivation { pname = "hercules-ci-api-agent"; - version = "0.4.5.0"; - sha256 = "1y6j7qbs1r78kd020j1w31xpl1alkwrgp6isigam86dzyngfw2wv"; + version = "0.4.6.0"; + sha256 = "0bdmz7c4ln2bbss5wa4q8k9wha47knnp9d9n3w9kj8p7wzhc2kly"; libraryHaskellDepends = [ aeson base base64-bytestring-type bytestring containers cookie deepseq exceptions hashable hercules-ci-api-core http-api-data @@ -136564,10 +136179,10 @@ self: { swagger2 text time unordered-containers uuid vector ]; testHaskellDepends = [ - aeson base bytestring containers cookie exceptions hashable hspec - http-api-data http-media lens memory network-uri profunctors - QuickCheck quickcheck-classes servant servant-auth string-conv - swagger2 text time uuid vector + aeson base bytestring containers cookie exceptions hashable + hercules-ci-api-core hspec http-api-data http-media lens memory + network-uri profunctors QuickCheck quickcheck-classes servant + servant-auth string-conv swagger2 text time uuid vector ]; description = "API definition for Hercules CI Agent to talk to hercules-ci.com or Hercules CI Enterprise"; license = lib.licenses.asl20; @@ -136583,8 +136198,8 @@ self: { }: mkDerivation { pname = "hercules-ci-api-core"; - version = "0.1.4.0"; - sha256 = "05bchaq46928d8mlp9r3h4l4lb21758dkpws8c494vbbgkss6mg1"; + version = "0.1.5.0"; + sha256 = "1f5fxivyy5fkchr5b8na2fxrmp4p7av61a28grsp7n0ndik1lfgd"; libraryHaskellDepends = [ aeson base bytestring containers cookie deepseq exceptions hashable http-api-data http-media katip lens lifted-base memory @@ -136613,8 +136228,8 @@ self: { }: mkDerivation { pname = "hercules-ci-cli"; - version = "0.3.2"; - sha256 = "1lr7ai19zq55y1ib7133llajpx4n041xv6gv797d1ibk03qj69gc"; + version = "0.3.4"; + sha256 = "1n79ka1bn99vqa8i14f94zs4b78vl2pidx0h8nrdvg1xclqa5fka"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -136653,8 +136268,8 @@ self: { }: mkDerivation { pname = "hercules-ci-cnix-expr"; - version = "0.3.3.0"; - sha256 = "03c579y14cnynnrgfj2p41q65aplhr5ayc8i38yzvm96i5d6w6yq"; + version = "0.3.4.0"; + sha256 = "1mszhnd2z0qy58x13w5nbw3ymqvd8vf0d4kh3bprrjlbll0rxmgn"; enableSeparateDataOutput = true; setupHaskellDepends = [ base Cabal cabal-pkg-config-version-hook ]; libraryHaskellDepends = [ @@ -136683,8 +136298,8 @@ self: { }: mkDerivation { pname = "hercules-ci-cnix-store"; - version = "0.3.3.1"; - sha256 = "12dar9i4kbils7f03almhlarhjysgh2zqsq24xqrsz6fwdcdn5v6"; + version = "0.3.3.2"; + sha256 = "11z6k9r8z2bvf0wly6b0fr0s3svbrf1rgz0v2in33jq6739lci92"; setupHaskellDepends = [ base Cabal cabal-pkg-config-version-hook ]; libraryHaskellDepends = [ base bytestring conduit containers inline-c inline-c-cpp protolude @@ -137115,52 +136730,61 @@ self: { }) {}; "hevm" = callPackage - ({ mkDerivation, abstract-par, aeson, ansi-wl-pprint, async, base - , base16-bytestring, binary, brick, bytestring, cereal, containers - , cryptonite, data-dword, Decimal, deepseq, directory, fgl - , filepath, free, haskeline, here, HUnit, lens, lens-aeson, libff - , megaparsec, memory, monad-par, mtl, multiset, operational - , optparse-generic, process, QuickCheck, quickcheck-text - , regex-tdfa, restless-git, rosezipper, s-cargot, sbv, scientific - , secp256k1, semver-range, tasty, tasty-hunit, tasty-quickcheck - , temporary, text, text-format, time, transformers, tree-view - , unordered-containers, vector, vty, witherable, wreq + ({ mkDerivation, abstract-par, aeson, ansi-wl-pprint, array, async + , base, base16-bytestring, binary, brick, bytestring, cereal + , containers, cryptonite, data-dword, Decimal, deepseq, directory + , fgl, filepath, free, haskeline, here, HUnit, lens, lens-aeson + , libff, megaparsec, memory, monad-par, mtl, multiset, operational + , optparse-generic, parsec, process, QuickCheck + , quickcheck-instances, quickcheck-text, regex, regex-tdfa + , restless-git, rosezipper, s-cargot, scientific, secp256k1 + , semver-range, smt2-parser, spool, tasty, tasty-expected-failure + , tasty-hunit, tasty-quickcheck, temporary, text, time + , transformers, tree-view, tuple, unordered-containers, vector, vty + , witherable, word-wrap, wreq }: mkDerivation { pname = "hevm"; - version = "0.49.0"; - sha256 = "1plkfzx0r5k77ymlkrg694vgx58jil5wx2m43ggs9ixnph0q3ysx"; + version = "0.50.0"; + sha256 = "0wdp7vl1aq79k8sw7n4mf6wv184as0pmprdffzklzkcskvs9yjmb"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ - abstract-par aeson ansi-wl-pprint base base16-bytestring binary - brick bytestring cereal containers cryptonite data-dword Decimal - deepseq directory fgl filepath free haskeline here lens lens-aeson - megaparsec memory monad-par mtl multiset operational - optparse-generic process QuickCheck quickcheck-text regex-tdfa - restless-git rosezipper s-cargot sbv scientific semver-range - temporary text text-format time transformers tree-view - unordered-containers vector vty witherable wreq + abstract-par aeson ansi-wl-pprint array async base + base16-bytestring binary brick bytestring cereal containers + cryptonite data-dword Decimal deepseq directory fgl filepath free + haskeline here HUnit lens lens-aeson megaparsec memory monad-par + mtl multiset operational optparse-generic parsec process QuickCheck + quickcheck-instances quickcheck-text regex regex-tdfa restless-git + rosezipper s-cargot scientific semver-range smt2-parser spool tasty + tasty-expected-failure tasty-hunit tasty-quickcheck temporary text + time transformers tree-view tuple unordered-containers vector vty + witherable word-wrap wreq ]; librarySystemDepends = [ libff secp256k1 ]; executableHaskellDepends = [ aeson ansi-wl-pprint async base base16-bytestring binary brick bytestring containers cryptonite data-dword deepseq directory filepath free lens lens-aeson memory mtl operational - optparse-generic process QuickCheck quickcheck-text regex-tdfa sbv - temporary text text-format unordered-containers vector vty + optparse-generic process QuickCheck quickcheck-text regex-tdfa + temporary text unordered-containers vector vty ]; testHaskellDepends = [ - base base16-bytestring binary bytestring containers free here HUnit - lens mtl QuickCheck sbv tasty tasty-hunit tasty-quickcheck text - vector + array base base16-bytestring binary bytestring containers + data-dword directory here HUnit lens mtl process QuickCheck + quickcheck-instances regex regex-tdfa smt2-parser tasty + tasty-expected-failure tasty-hunit tasty-quickcheck temporary text + time vector ]; testSystemDepends = [ secp256k1 ]; + doHaddock = false; description = "Ethereum virtual machine evaluator"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "hevm"; maintainers = [ lib.maintainers.arturcygan ]; + broken = true; }) {inherit (pkgs) libff; inherit (pkgs) secp256k1;}; "hevolisa" = callPackage @@ -137213,20 +136837,6 @@ self: { }) {}; "hex-text" = callPackage - ({ mkDerivation, base, base16-bytestring, bytestring, text }: - mkDerivation { - pname = "hex-text"; - version = "0.1.0.6"; - sha256 = "1a5ccvbj7asbx92f4309qfwwih8ffnfi5kkahdn6dp444xa374r7"; - revision = "2"; - editedCabalFile = "00bwakiri9vbn05zi7alwhl5rdg13ls3pydcrgc0q4v8banrp868"; - libraryHaskellDepends = [ base base16-bytestring bytestring text ]; - testHaskellDepends = [ base base16-bytestring bytestring text ]; - description = "ByteString-Text hexidecimal conversions"; - license = lib.licenses.mit; - }) {}; - - "hex-text_0_1_0_7" = callPackage ({ mkDerivation, base, base16-bytestring, bytestring, text }: mkDerivation { pname = "hex-text"; @@ -137236,7 +136846,6 @@ self: { testHaskellDepends = [ base base16-bytestring bytestring text ]; description = "ByteString-Text hexidecimal conversions"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hexchat" = callPackage @@ -137635,8 +137244,6 @@ self: { libraryToolDepends = [ c2hs ]; description = "Haskell bindings for the Keystone assembler framework"; license = lib.licenses.gpl2Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) keystone;}; "heyting-algebras" = callPackage @@ -137658,6 +137265,8 @@ self: { ]; description = "Heyting and Boolean algebras"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hfann" = callPackage @@ -137781,7 +137390,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "hfoil"; - broken = true; }) {}; "hformat" = callPackage @@ -138138,9 +137746,7 @@ self: { ]; description = "Bindings to libintl.h (gettext, bindtextdomain)"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hgettext"; - broken = true; }) {}; "hgis" = callPackage @@ -138523,6 +138129,8 @@ self: { libraryToolDepends = [ c2hs ]; description = "Interface to hidapi library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) hidapi;}; "hid-examples" = callPackage @@ -138606,6 +138214,8 @@ self: { pname = "hie-bios"; version = "0.11.0"; sha256 = "1vqfbyi1jlgzrvl9njgdhvj1hp0b7rl4xpchyldpf179151vy24p"; + revision = "3"; + editedCabalFile = "0axmy522cfk92c5hwrqhkqswlxlm26m821b64rnh32666sxfdhy1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -138946,6 +138556,8 @@ self: { ]; description = "A rich monadic API for working with leveldb databases"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "higherorder" = callPackage @@ -139147,7 +138759,9 @@ self: { ]; description = "Generate STL models from SRTM elevation data"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hills"; + broken = true; }) {}; "himerge" = callPackage @@ -139490,8 +139104,6 @@ self: { ]; description = "inotify conduit sources"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hinquire" = callPackage @@ -139568,6 +139180,7 @@ self: { description = "A server process that runs hint"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hinter" = callPackage @@ -140442,26 +140055,6 @@ self: { }) {}; "hkgr" = callPackage - ({ mkDerivation, base, bytestring, directory, extra, filepath - , simple-cabal, simple-cmd-args, typed-process, xdg-basedir - }: - mkDerivation { - pname = "hkgr"; - version = "0.3"; - sha256 = "1w8ww2dkskdfs0lh6wbn5byhnrf6mwih7n5yp81fr6awdc0k1qrm"; - isLibrary = false; - isExecutable = true; - enableSeparateDataOutput = true; - executableHaskellDepends = [ - base bytestring directory extra filepath simple-cabal - simple-cmd-args typed-process xdg-basedir - ]; - description = "Simple Hackage release workflow for package maintainers"; - license = lib.licenses.gpl3Only; - mainProgram = "hkgr"; - }) {}; - - "hkgr_0_4_2" = callPackage ({ mkDerivation, base, bytestring, directory, extra, filepath , simple-cabal, simple-cmd-args, typed-process, xdg-basedir }: @@ -140478,7 +140071,6 @@ self: { ]; description = "Simple Hackage release workflow for package maintainers"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; mainProgram = "hkgr"; }) {}; @@ -140586,49 +140178,6 @@ self: { }) {}; "hledger" = callPackage - ({ mkDerivation, aeson, ansi-terminal, base, bytestring, cmdargs - , containers, data-default, Decimal, Diff, directory, extra - , filepath, githash, hashable, haskeline, hledger-lib, lucid - , math-functions, megaparsec, microlens, mtl, process, regex-tdfa - , safe, shakespeare, split, tabular, tasty, temporary, terminfo - , text, time, timeit, transformers, unordered-containers - , utf8-string, utility-ht, wizards - }: - mkDerivation { - pname = "hledger"; - version = "1.25"; - sha256 = "0dmzmvkg8gk8rwbhvc4v4ch12i1pqvd91jx3z5c0plmx49f8q65k"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson ansi-terminal base bytestring cmdargs containers data-default - Decimal Diff directory extra filepath githash hashable haskeline - hledger-lib lucid math-functions megaparsec microlens mtl process - regex-tdfa safe shakespeare split tabular tasty temporary terminfo - text time timeit transformers unordered-containers utf8-string - utility-ht wizards - ]; - executableHaskellDepends = [ - aeson ansi-terminal base bytestring cmdargs containers data-default - Decimal directory extra filepath githash haskeline hledger-lib - math-functions megaparsec microlens mtl process regex-tdfa safe - shakespeare split tabular tasty temporary terminfo text time timeit - transformers unordered-containers utf8-string utility-ht wizards - ]; - testHaskellDepends = [ - aeson ansi-terminal base bytestring cmdargs containers data-default - Decimal directory extra filepath githash haskeline hledger-lib - math-functions megaparsec microlens mtl process regex-tdfa safe - shakespeare split tabular tasty temporary terminfo text time timeit - transformers unordered-containers utf8-string utility-ht wizards - ]; - description = "Command-line interface for the hledger accounting system"; - license = lib.licenses.gpl3Only; - mainProgram = "hledger"; - maintainers = [ lib.maintainers.peti ]; - }) {}; - - "hledger_1_27_1" = callPackage ({ mkDerivation, aeson, ansi-terminal, base, breakpoint, bytestring , cmdargs, containers, data-default, Decimal, Diff, directory , extra, filepath, githash, hashable, haskeline, hledger-lib, lucid @@ -140669,9 +140218,56 @@ self: { ]; description = "Command-line interface for the hledger accounting system"; license = lib.licenses.gpl3Only; + mainProgram = "hledger"; + maintainers = [ + lib.maintainers.maralorn lib.maintainers.sternenseemann + ]; + }) {}; + + "hledger_1_28" = callPackage + ({ mkDerivation, aeson, ansi-terminal, base, bytestring, cmdargs + , containers, data-default, Decimal, Diff, directory, extra + , filepath, githash, hashable, haskeline, hledger-lib, lucid + , math-functions, megaparsec, microlens, mtl, process, regex-tdfa + , safe, shakespeare, split, tabular, tasty, temporary, terminfo + , text, time, timeit, transformers, unordered-containers + , utf8-string, utility-ht, wizards + }: + mkDerivation { + pname = "hledger"; + version = "1.28"; + sha256 = "0lagm7wk0k8jyk6kqggw7qka0jigqzjyqrrl4pr6cm0wd7x34cd8"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson ansi-terminal base bytestring cmdargs containers data-default + Decimal Diff directory extra filepath githash hashable haskeline + hledger-lib lucid math-functions megaparsec microlens mtl process + regex-tdfa safe shakespeare split tabular tasty temporary terminfo + text time timeit transformers unordered-containers utf8-string + utility-ht wizards + ]; + executableHaskellDepends = [ + aeson ansi-terminal base bytestring cmdargs containers data-default + Decimal directory extra filepath githash haskeline hledger-lib + math-functions megaparsec microlens mtl process regex-tdfa safe + shakespeare split tabular tasty temporary terminfo text time timeit + transformers unordered-containers utf8-string utility-ht wizards + ]; + testHaskellDepends = [ + aeson ansi-terminal base bytestring cmdargs containers data-default + Decimal directory extra filepath githash haskeline hledger-lib + math-functions megaparsec microlens mtl process regex-tdfa safe + shakespeare split tabular tasty temporary terminfo text time timeit + transformers unordered-containers utf8-string utility-ht wizards + ]; + description = "Command-line interface for the hledger accounting system"; + license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "hledger"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ + lib.maintainers.maralorn lib.maintainers.sternenseemann + ]; }) {}; "hledger-api" = callPackage @@ -140698,7 +140294,6 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "hledger-api"; - broken = true; }) {}; "hledger-chart" = callPackage @@ -140775,8 +140370,8 @@ self: { pname = "hledger-iadd"; version = "1.3.17"; sha256 = "1b3qz5vm8db6gsdakg8nf3qc6rp7mlh3zpkzvhi80pqm3jzdbjph"; - revision = "2"; - editedCabalFile = "1npd15zy812mx83xbgwgxv7sdvv5cmznbw75y8inafmxk2jj1wn8"; + revision = "3"; + editedCabalFile = "0xb476i2xn0ncfqx65qy4vs0g2dchw5p0naxgz4zfmffrmyfsc92"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -140796,30 +140391,12 @@ self: { testToolDepends = [ hspec-discover ]; description = "A terminal UI as drop-in replacement for hledger add"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hledger-iadd"; + broken = true; }) {}; "hledger-interest" = callPackage - ({ mkDerivation, base, Cabal, Decimal, hledger-lib, mtl, text, time - }: - mkDerivation { - pname = "hledger-interest"; - version = "1.6.3"; - sha256 = "1r8iydl66k2j7xv1b465alf3h8mqwjfz13ffwsd50h0kscxjmxhg"; - revision = "2"; - editedCabalFile = "1hsd1r4j0737lkllxa3ivrbdcp3da2vr5fiakfhrw5fqsbi3p8rc"; - isLibrary = false; - isExecutable = true; - executableHaskellDepends = [ - base Cabal Decimal hledger-lib mtl text time - ]; - description = "computes interest for a given account"; - license = lib.licenses.bsd3; - mainProgram = "hledger-interest"; - maintainers = [ lib.maintainers.peti ]; - }) {}; - - "hledger-interest_1_6_4" = callPackage ({ mkDerivation, base, Cabal, Decimal, hledger-lib, mtl, text, time }: mkDerivation { @@ -140835,7 +140412,6 @@ self: { ]; description = "computes interest for a given account"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hledger-interest"; maintainers = [ lib.maintainers.peti ]; }) {}; @@ -140862,48 +140438,12 @@ self: { }) {}; "hledger-lib" = callPackage - ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, array, base - , blaze-markup, bytestring, call-stack, cassava, cassava-megaparsec - , cmdargs, containers, data-default, Decimal, directory, doclayout - , extra, file-embed, filepath, Glob, hashtables, megaparsec - , microlens, microlens-th, mtl, parser-combinators, pretty-simple - , regex-tdfa, safe, tabular, tasty, tasty-hunit, template-haskell - , text, time, timeit, transformers, uglymemo, unordered-containers - , utf8-string - }: - mkDerivation { - pname = "hledger-lib"; - version = "1.25"; - sha256 = "06b9nkpkwbr14jgbc04635qd7b3s068jvdfkfiza2zb4yzhdzh1n"; - libraryHaskellDepends = [ - aeson aeson-pretty ansi-terminal array base blaze-markup bytestring - call-stack cassava cassava-megaparsec cmdargs containers - data-default Decimal directory doclayout extra file-embed filepath - Glob hashtables megaparsec microlens microlens-th mtl - parser-combinators pretty-simple regex-tdfa safe tabular tasty - tasty-hunit template-haskell text time timeit transformers uglymemo - unordered-containers utf8-string - ]; - testHaskellDepends = [ - aeson aeson-pretty ansi-terminal array base blaze-markup bytestring - call-stack cassava cassava-megaparsec cmdargs containers - data-default Decimal directory doclayout extra file-embed filepath - Glob hashtables megaparsec microlens microlens-th mtl - parser-combinators pretty-simple regex-tdfa safe tabular tasty - tasty-hunit template-haskell text time timeit transformers uglymemo - unordered-containers utf8-string - ]; - description = "A reusable library providing the core functionality of hledger"; - license = lib.licenses.gpl3Only; - }) {}; - - "hledger-lib_1_27_1" = callPackage ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, array, base , blaze-markup, breakpoint, bytestring, call-stack, cassava , cassava-megaparsec, cmdargs, containers, data-default, Decimal - , deepseq, directory, doclayout, extra, file-embed, filepath, Glob - , hashtables, megaparsec, microlens, microlens-th, mtl - , parser-combinators, pretty-simple, regex-tdfa, safe, tabular + , deepseq, directory, doclayout, doctest, extra, file-embed + , filepath, Glob, hashtables, megaparsec, microlens, microlens-th + , mtl, parser-combinators, pretty-simple, regex-tdfa, safe, tabular , tasty, tasty-hunit, template-haskell, text, time, timeit , transformers, uglymemo, unordered-containers, utf8-string }: @@ -140923,12 +140463,48 @@ self: { testHaskellDepends = [ aeson aeson-pretty ansi-terminal array base blaze-markup breakpoint bytestring call-stack cassava cassava-megaparsec cmdargs containers + data-default Decimal deepseq directory doclayout doctest extra + file-embed filepath Glob hashtables megaparsec microlens + microlens-th mtl parser-combinators pretty-simple regex-tdfa safe + tabular tasty tasty-hunit template-haskell text time timeit + transformers uglymemo unordered-containers utf8-string + ]; + description = "A reusable library providing the core functionality of hledger"; + license = lib.licenses.gpl3Only; + }) {}; + + "hledger-lib_1_28" = callPackage + ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, array, base + , blaze-markup, bytestring, call-stack, cassava, cassava-megaparsec + , cmdargs, containers, data-default, Decimal, deepseq, directory + , doclayout, doctest, extra, file-embed, filepath, Glob, hashtables + , megaparsec, microlens, microlens-th, mtl, parser-combinators + , pretty-simple, regex-tdfa, safe, tabular, tasty, tasty-hunit + , template-haskell, text, time, timeit, transformers, uglymemo + , unordered-containers, utf8-string + }: + mkDerivation { + pname = "hledger-lib"; + version = "1.28"; + sha256 = "098c36vx16xnjs27sn9h2794hyf7py5bhn1kaw8ira6akljgzh4k"; + libraryHaskellDepends = [ + aeson aeson-pretty ansi-terminal array base blaze-markup bytestring + call-stack cassava cassava-megaparsec cmdargs containers data-default Decimal deepseq directory doclayout extra file-embed filepath Glob hashtables megaparsec microlens microlens-th mtl parser-combinators pretty-simple regex-tdfa safe tabular tasty tasty-hunit template-haskell text time timeit transformers uglymemo unordered-containers utf8-string ]; + testHaskellDepends = [ + aeson aeson-pretty ansi-terminal array base blaze-markup bytestring + call-stack cassava cassava-megaparsec cmdargs containers + data-default Decimal deepseq directory doclayout doctest extra + file-embed filepath Glob hashtables megaparsec microlens + microlens-th mtl parser-combinators pretty-simple regex-tdfa safe + tabular tasty tasty-hunit template-haskell text time timeit + transformers uglymemo unordered-containers utf8-string + ]; description = "A reusable library providing the core functionality of hledger"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; @@ -140957,36 +140533,6 @@ self: { }) {}; "hledger-stockquotes" = callPackage - ({ mkDerivation, aeson, base, bytestring, cmdargs, containers - , directory, hedgehog, hledger-lib, raw-strings-qq, req, safe - , safe-exceptions, scientific, split, tasty, tasty-hedgehog - , tasty-hunit, text, time, unordered-containers, xdg-basedir, yaml - }: - mkDerivation { - pname = "hledger-stockquotes"; - version = "0.1.2.0"; - sha256 = "064q6qz6rrahk9ri5hr1y6n17nmd4l124xb3l8q5rvm81x3hzp3x"; - revision = "1"; - editedCabalFile = "1dbcvypi8kcrcy38wbvhaadhs2fwjw1kh3xzzq07ss30a7gg3k8y"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base bytestring containers hledger-lib req safe scientific - split text time unordered-containers - ]; - executableHaskellDepends = [ - aeson base bytestring cmdargs directory raw-strings-qq - safe-exceptions text time xdg-basedir yaml - ]; - testHaskellDepends = [ - base hedgehog tasty tasty-hedgehog tasty-hunit - ]; - description = "Generate HLedger Price Directives From Daily Stock Quotes"; - license = lib.licenses.bsd3; - mainProgram = "hledger-stockquotes"; - }) {}; - - "hledger-stockquotes_0_1_2_1" = callPackage ({ mkDerivation, aeson, base, bytestring, cmdargs, containers , directory, hedgehog, hledger-lib, raw-strings-qq, req, safe , safe-exceptions, scientific, split, tasty, tasty-hedgehog @@ -141013,36 +140559,10 @@ self: { ]; description = "Generate HLedger Price Directives From Daily Stock Quotes"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hledger-stockquotes"; }) {}; "hledger-ui" = callPackage - ({ mkDerivation, ansi-terminal, async, base, brick, cmdargs - , containers, data-default, directory, doclayout, extra, filepath - , fsnotify, hledger, hledger-lib, megaparsec, microlens - , microlens-platform, process, safe, split, text, text-zipper, time - , transformers, unix, vector, vty - }: - mkDerivation { - pname = "hledger-ui"; - version = "1.25"; - sha256 = "1sagm19anvs9b609s4rzlhjdjwd74ywbxf211j35ia5wslj8031x"; - isLibrary = false; - isExecutable = true; - executableHaskellDepends = [ - ansi-terminal async base brick cmdargs containers data-default - directory doclayout extra filepath fsnotify hledger hledger-lib - megaparsec microlens microlens-platform process safe split text - text-zipper time transformers unix vector vty - ]; - description = "Curses-style terminal interface for the hledger accounting system"; - license = lib.licenses.gpl3Only; - mainProgram = "hledger-ui"; - maintainers = [ lib.maintainers.peti ]; - }) {}; - - "hledger-ui_1_27_1" = callPackage ({ mkDerivation, ansi-terminal, async, base, breakpoint, brick , cmdargs, containers, data-default, directory, doclayout, extra , filepath, fsnotify, hledger, hledger-lib, megaparsec, microlens @@ -141063,9 +140583,34 @@ self: { ]; description = "Curses-style terminal interface for the hledger accounting system"; license = lib.licenses.gpl3Only; + mainProgram = "hledger-ui"; + maintainers = [ lib.maintainers.maralorn ]; + }) {}; + + "hledger-ui_1_28" = callPackage + ({ mkDerivation, ansi-terminal, async, base, brick, cmdargs + , containers, data-default, directory, doclayout, extra, filepath + , fsnotify, hledger, hledger-lib, megaparsec, microlens + , microlens-platform, mtl, process, safe, split, text, text-zipper + , time, transformers, unix, vector, vty + }: + mkDerivation { + pname = "hledger-ui"; + version = "1.28"; + sha256 = "04jq73ra4gv5q5lj0ivhrabkxkvp278c0sqyv6sa9sks0iwlgm3p"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + ansi-terminal async base brick cmdargs containers data-default + directory doclayout extra filepath fsnotify hledger hledger-lib + megaparsec microlens microlens-platform mtl process safe split text + text-zipper time transformers unix vector vty + ]; + description = "Curses-style terminal interface for the hledger accounting system"; + license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "hledger-ui"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.maralorn ]; }) {}; "hledger-vty" = callPackage @@ -141089,43 +140634,6 @@ self: { }) {}; "hledger-web" = callPackage - ({ mkDerivation, aeson, base, base64, blaze-html, blaze-markup - , bytestring, case-insensitive, clientsession, cmdargs, conduit - , conduit-extra, containers, data-default, Decimal, directory - , extra, filepath, hjsmin, hledger, hledger-lib, hspec, http-client - , http-conduit, http-types, megaparsec, mtl, network, shakespeare - , template-haskell, text, time, transformers, unix-compat - , unordered-containers, utf8-string, wai, wai-cors, wai-extra - , wai-handler-launch, warp, yaml, yesod, yesod-core, yesod-form - , yesod-static, yesod-test - }: - mkDerivation { - pname = "hledger-web"; - version = "1.25"; - sha256 = "0bgy2whld4b5f3ahs0zbmrgh56i0drw5hv43wnb57qixcirhlf8g"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base base64 blaze-html blaze-markup bytestring - case-insensitive clientsession cmdargs conduit conduit-extra - containers data-default Decimal directory extra filepath hjsmin - hledger hledger-lib hspec http-client http-conduit http-types - megaparsec mtl network shakespeare template-haskell text time - transformers unix-compat unordered-containers utf8-string wai - wai-cors wai-extra wai-handler-launch warp yaml yesod yesod-core - yesod-form yesod-static yesod-test - ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ - base hledger hledger-lib hspec text yesod yesod-test - ]; - description = "Web-based user interface for the hledger accounting system"; - license = lib.licenses.gpl3Only; - mainProgram = "hledger-web"; - maintainers = [ lib.maintainers.peti ]; - }) {}; - - "hledger-web_1_27_1" = callPackage ({ mkDerivation, aeson, base, base64, blaze-html, blaze-markup , breakpoint, bytestring, case-insensitive, clientsession, cmdargs , conduit, conduit-extra, containers, data-default, Decimal @@ -141158,9 +140666,46 @@ self: { ]; description = "Web-based user interface for the hledger accounting system"; license = lib.licenses.gpl3Only; + mainProgram = "hledger-web"; + maintainers = [ lib.maintainers.maralorn ]; + }) {}; + + "hledger-web_1_28" = callPackage + ({ mkDerivation, aeson, base, base64, blaze-html, blaze-markup + , bytestring, case-insensitive, clientsession, cmdargs, conduit + , conduit-extra, containers, data-default, Decimal, directory + , extra, filepath, hjsmin, hledger, hledger-lib, hspec, http-client + , http-conduit, http-types, megaparsec, mtl, network, shakespeare + , template-haskell, text, time, transformers, unix-compat + , unordered-containers, utf8-string, wai, wai-cors, wai-extra + , wai-handler-launch, warp, yaml, yesod, yesod-core, yesod-form + , yesod-static, yesod-test + }: + mkDerivation { + pname = "hledger-web"; + version = "1.28"; + sha256 = "143340249wbcq4nsykk2d32xv9r89znzl8fr9yhaab68zlppfyh1"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base base64 blaze-html blaze-markup bytestring + case-insensitive clientsession cmdargs conduit conduit-extra + containers data-default Decimal directory extra filepath hjsmin + hledger hledger-lib hspec http-client http-conduit http-types + megaparsec mtl network shakespeare template-haskell text time + transformers unix-compat unordered-containers utf8-string wai + wai-cors wai-extra wai-handler-launch warp yaml yesod yesod-core + yesod-form yesod-static yesod-test + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ + base hledger hledger-lib hspec text yesod yesod-test + ]; + description = "Web-based user interface for the hledger accounting system"; + license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "hledger-web"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.maralorn ]; }) {}; "hlibBladeRF" = callPackage @@ -141281,36 +140826,9 @@ self: { }) {}; "hlint" = callPackage - ({ mkDerivation, aeson, ansi-terminal, base, bytestring, cmdargs - , containers, cpphs, data-default, directory, extra, file-embed - , filepath, filepattern, ghc, ghc-boot, ghc-boot-th - , ghc-lib-parser-ex, hscolour, process, refact, text, transformers - , uniplate, unordered-containers, utf8-string, vector, yaml - }: - mkDerivation { - pname = "hlint"; - version = "3.3.6"; - sha256 = "0g4fnx0xlwny41dw01vxmfq9ibfwvpgf1cailj870k2wrbs2c9df"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson ansi-terminal base bytestring cmdargs containers cpphs - data-default directory extra file-embed filepath filepattern ghc - ghc-boot ghc-boot-th ghc-lib-parser-ex hscolour process refact text - transformers uniplate unordered-containers utf8-string vector yaml - ]; - executableHaskellDepends = [ base ]; - description = "Source code suggestions"; - license = lib.licenses.bsd3; - mainProgram = "hlint"; - maintainers = [ lib.maintainers.maralorn ]; - }) {}; - - "hlint_3_4_1" = callPackage ({ mkDerivation, aeson, ansi-terminal, base, bytestring, cmdargs , containers, cpphs, data-default, deriving-aeson, directory, extra - , file-embed, filepath, filepattern, ghc-lib-parser + , file-embed, filepath, filepattern, ghc, ghc-boot, ghc-boot-th , ghc-lib-parser-ex, hscolour, process, refact, text, transformers , uniplate, unordered-containers, utf8-string, vector, yaml }: @@ -141318,20 +140836,21 @@ self: { pname = "hlint"; version = "3.4.1"; sha256 = "0bkk03c9hacvfd73dk89g4r81b50g7pjgw5pavldali4qwss34cz"; + revision = "1"; + editedCabalFile = "1rdaffg5n179yfcn5zjwjb0bki09qy13gz2ijky455y9pbaz8yz9"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson ansi-terminal base bytestring cmdargs containers cpphs data-default deriving-aeson directory extra file-embed filepath - filepattern ghc-lib-parser ghc-lib-parser-ex hscolour process - refact text transformers uniplate unordered-containers utf8-string - vector yaml + filepattern ghc ghc-boot ghc-boot-th ghc-lib-parser-ex hscolour + process refact text transformers uniplate unordered-containers + utf8-string vector yaml ]; executableHaskellDepends = [ base ]; description = "Source code suggestions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hlint"; maintainers = [ lib.maintainers.maralorn ]; }) {}; @@ -141455,13 +140974,14 @@ self: { pname = "hlrdb"; version = "0.4.0.0"; sha256 = "0cj2ff40n3v171xhvdips3als1f2x91ksxcqm7i570mwkdgbh1jr"; + revision = "1"; + editedCabalFile = "0ymp486cfw71vv2ydn9dgaixmq5dgcpy5x1jzibrld5cd14fs3gg"; libraryHaskellDepends = [ base base64 bytestring cryptonite hashable hedis hlrdb-core memory random store time unordered-containers zstd ]; description = "High-level Redis Database"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hlrdb-core" = callPackage @@ -141472,16 +140992,14 @@ self: { pname = "hlrdb-core"; version = "0.2.0.0"; sha256 = "0hkjll4v4kxc133b19kk9k4dkrbag6qdw24gwrhikrxlk666jsbl"; - revision = "1"; - editedCabalFile = "15pcz7f2alsyccz5id162ka4win9j6l98ygpgaycl6n57vcd3nsv"; + revision = "2"; + editedCabalFile = "1ql8dg9axrwrlz8wnxx7zkw8i5761qqlhkiy5frc3p5nqvxmf18b"; libraryHaskellDepends = [ base bytestring hashable hedis lens mtl profunctors random time unordered-containers ]; description = "High-level Redis Database Core API"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hls" = callPackage @@ -141521,21 +141039,15 @@ self: { }) {}; "hls-brittany-plugin" = callPackage - ({ mkDerivation, base, brittany, czipwith, extra, filepath - , ghc-boot-th, ghc-exactprint, ghcide, hls-plugin-api - , hls-test-utils, lens, lsp-types, text, transformers - }: + ({ mkDerivation }: mkDerivation { pname = "hls-brittany-plugin"; version = "1.0.2.2"; sha256 = "0spr7qmqjkg0aqr16cp9pi5dqc10lskhqa6mpx49z0rifhk84hay"; - libraryHaskellDepends = [ - base brittany czipwith extra filepath ghc-boot-th ghc-exactprint - ghcide hls-plugin-api lens lsp-types text transformers - ]; - testHaskellDepends = [ base filepath hls-test-utils ]; description = "Integration with the Brittany code formatter"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hls-call-hierarchy-plugin" = callPackage @@ -141666,7 +141178,6 @@ self: { description = "Common utilities to interaction between ghc-exactprint and HLS plugins"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hls-explicit-fixity-plugin" = callPackage @@ -141793,21 +141304,15 @@ self: { }) {}; "hls-haddock-comments-plugin" = callPackage - ({ mkDerivation, base, containers, filepath, ghc, ghc-exactprint - , ghcide, hls-plugin-api, hls-refactor-plugin, hls-test-utils - , lsp-types, text, unordered-containers - }: + ({ mkDerivation }: mkDerivation { pname = "hls-haddock-comments-plugin"; version = "1.1.0.0"; sha256 = "0g0vwn5mcl4g1gxzg501mchxyyqwz83hjhqzai33qsmklcmnk5rc"; - libraryHaskellDepends = [ - base containers ghc ghc-exactprint ghcide hls-plugin-api - hls-refactor-plugin lsp-types text unordered-containers - ]; - testHaskellDepends = [ base filepath hls-test-utils text ]; description = "Haddock comments plugin for Haskell Language Server"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hls-hlint-plugin" = callPackage @@ -142070,6 +141575,8 @@ self: { testHaskellDepends = [ base filepath hls-test-utils text ]; description = "HLS Plugin to expand TemplateHaskell Splices and QuasiQuotes"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hls-stan-plugin" = callPackage @@ -142093,6 +141600,8 @@ self: { pname = "hls-stylish-haskell-plugin"; version = "1.0.1.1"; sha256 = "1k9bv31226zgy5aqxzzj7npph2ff0r5bx692q5n26lpil2ivq6sn"; + revision = "1"; + editedCabalFile = "1bpyfjnp6ahy3c56zg8llw74dq9qmmsqxc4l0867v99pdj827l55"; libraryHaskellDepends = [ base directory filepath ghc ghc-boot-th ghcide hls-plugin-api lsp-types stylish-haskell text @@ -142131,6 +141640,8 @@ self: { testToolDepends = [ hspec-discover ]; description = "Wingman plugin for Haskell Language Server"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hls-test-utils" = callPackage @@ -142184,6 +141695,7 @@ self: { description = "Haskell LilyPond"; license = "GPL"; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hmark" = callPackage @@ -142486,7 +141998,6 @@ self: { description = "hmatrix interface to sundials"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {sundials_arkode = null; sundials_cvode = null;}; "hmatrix-svdlibc" = callPackage @@ -142740,6 +142251,7 @@ self: { doHaddock = false; description = "Hidden Markov Models using LAPACK primitives"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hmp3" = callPackage @@ -142787,39 +142299,55 @@ self: { }) {inherit (pkgs) ncurses;}; "hmpfr" = callPackage - ({ mkDerivation, base, integer-gmp, mpfr }: + ({ mkDerivation, base, mpfr }: mkDerivation { pname = "hmpfr"; - version = "0.4.4"; - sha256 = "1x8n5245rm0brjl7vhcabazh1k69dcjdas70pnrnlkx26bqfpb9b"; + version = "0.4.5"; + sha256 = "1m2yfaacc4c6ak3dm9k9623kgz8mgqr922apzz79dx9yccpgn2ml"; enableSeparateDataOutput = true; - libraryHaskellDepends = [ base integer-gmp ]; + libraryHaskellDepends = [ base ]; librarySystemDepends = [ mpfr ]; description = "Haskell binding to the MPFR library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) mpfr;}; "hmt" = callPackage - ({ mkDerivation, aeson, array, base, bytestring, colour, containers - , data-ordlist, directory, fgl, filepath, hsc3, lazy-csv, logict - , multiset-comb, parsec, permutation, primes, process, random, safe - , split, text, time + ({ mkDerivation, array, base, bytestring, colour, containers + , data-memocombinators, data-ordlist, directory, fgl, filepath + , hmt-base, lazy-csv, logict, multiset-comb, parsec, primes + , process, random, safe, split, strict, text, time }: mkDerivation { pname = "hmt"; - version = "0.18"; - sha256 = "14c54z5zcg84nvq80yv3j3n6l7nha1l772vg3nsfsgy6fg430xdb"; + version = "0.20"; + sha256 = "0nz1k7xyyv51yjxlndwbqlg2vwrgxc7mj362nfclqfmly0ml0ynf"; enableSeparateDataOutput = true; libraryHaskellDepends = [ - aeson array base bytestring colour containers data-ordlist - directory fgl filepath hsc3 lazy-csv logict multiset-comb parsec - permutation primes process random safe split text time + array base bytestring colour containers data-memocombinators + data-ordlist directory fgl filepath hmt-base lazy-csv logict + multiset-comb parsec primes process random safe split strict text + time ]; description = "Haskell Music Theory"; - license = "GPL"; - hydraPlatforms = lib.platforms.none; + license = lib.licenses.gpl3Only; + }) {}; + + "hmt-base" = callPackage + ({ mkDerivation, array, base, bytestring, containers, data-ordlist + , directory, filepath, lazy-csv, monad-loops, process, random, safe + , split, text, time + }: + mkDerivation { + pname = "hmt-base"; + version = "0.20"; + sha256 = "1g28if5b4azpbj28s4p6n76i2bami5przmh9f2axaj3awpk1ly2r"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + array base bytestring containers data-ordlist directory filepath + lazy-csv monad-loops process random safe split text time + ]; + description = "Haskell Music Theory Base"; + license = lib.licenses.gpl3Only; }) {}; "hmt-diagrams" = callPackage @@ -142893,63 +142421,6 @@ self: { }) {inherit (pkgs) netcdf;}; "hnix" = callPackage - ({ mkDerivation, aeson, array, base, base16-bytestring, binary - , bytestring, comonad, containers, criterion, cryptonite, data-fix - , deepseq, deriving-compat, Diff, directory, exceptions, filepath - , free, gitrev, Glob, hashable, hashing, haskeline, hedgehog - , hnix-store-core, hnix-store-remote, http-client, http-client-tls - , http-types, lens-family, lens-family-core, lens-family-th, logict - , megaparsec, monad-control, monadlist, mtl, neat-interpolation - , optparse-applicative, parser-combinators, pretty-show - , prettyprinter, process, ref-tf, regex-tdfa, relude, repline - , scientific, semialign, serialise, some, split, syb, tasty - , tasty-hedgehog, tasty-hunit, tasty-th, template-haskell, text - , th-lift-instances, these, time, transformers, transformers-base - , unix, unordered-containers, vector, xml - }: - mkDerivation { - pname = "hnix"; - version = "0.14.0.8"; - sha256 = "101zbbrqs3fv1kxp428r97pq59fa6g0qkj1bqnsfchv4mxizg8jc"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson array base base16-bytestring binary bytestring comonad - containers cryptonite data-fix deepseq deriving-compat directory - exceptions filepath free gitrev hashable hashing hnix-store-core - hnix-store-remote http-client http-client-tls http-types - lens-family lens-family-core lens-family-th logict megaparsec - monad-control monadlist mtl neat-interpolation optparse-applicative - parser-combinators pretty-show prettyprinter process ref-tf - regex-tdfa relude scientific semialign serialise some split syb - template-haskell text th-lift-instances these time transformers - transformers-base unix unordered-containers vector xml - ]; - executableHaskellDepends = [ - aeson base comonad containers data-fix deepseq exceptions filepath - free haskeline optparse-applicative pretty-show prettyprinter - ref-tf relude repline serialise template-haskell time - ]; - testHaskellDepends = [ - base containers data-fix Diff directory exceptions filepath Glob - hedgehog megaparsec neat-interpolation optparse-applicative - pretty-show prettyprinter process relude serialise split tasty - tasty-hedgehog tasty-hunit tasty-th template-haskell time unix - ]; - benchmarkHaskellDepends = [ - base criterion data-fix exceptions filepath optparse-applicative - relude serialise template-haskell time - ]; - description = "Haskell implementation of the Nix language"; - license = lib.licenses.bsd3; - mainProgram = "hnix"; - maintainers = [ - lib.maintainers.Anton-Latukha lib.maintainers.sorki - ]; - }) {}; - - "hnix_0_16_0" = callPackage ({ mkDerivation, aeson, array, base, base16-bytestring, binary , bytestring, comonad, containers, criterion, cryptonite, data-fix , deepseq, deriving-compat, Diff, directory, exceptions, filepath @@ -143000,14 +142471,13 @@ self: { ]; description = "Haskell implementation of the Nix language"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hnix"; maintainers = [ lib.maintainers.Anton-Latukha lib.maintainers.sorki ]; }) {}; - "hnix-store-core_0_5_0_0" = callPackage + "hnix-store-core" = callPackage ({ mkDerivation, algebraic-graphs, attoparsec, base , base16-bytestring, base64-bytestring, binary, bytestring, cereal , containers, cryptonite, directory, filepath, hashable, hspec @@ -143037,13 +142507,12 @@ self: { testToolDepends = [ tasty-discover ]; description = "Core effects for interacting with the Nix store"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Anton-Latukha lib.maintainers.sorki ]; }) {}; - "hnix-store-core" = callPackage + "hnix-store-core_0_6_0_0" = callPackage ({ mkDerivation, algebraic-graphs, attoparsec, base , base16-bytestring, base64-bytestring, binary, bytestring, cereal , containers, cryptonite, directory, filepath, hashable, hspec @@ -143072,12 +142541,13 @@ self: { testToolDepends = [ tasty-discover ]; description = "Core effects for interacting with the Nix store"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Anton-Latukha lib.maintainers.sorki ]; }) {}; - "hnix-store-remote_0_5_0_0" = callPackage + "hnix-store-remote" = callPackage ({ mkDerivation, attoparsec, base, binary, bytestring, containers , cryptonite, hnix-store-core, mtl, network, nix-derivation, text , time, unordered-containers @@ -143093,13 +142563,12 @@ self: { ]; description = "Remote hnix store"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Anton-Latukha lib.maintainers.sorki ]; }) {}; - "hnix-store-remote" = callPackage + "hnix-store-remote_0_6_0_0" = callPackage ({ mkDerivation, attoparsec, base, binary, bytestring, containers , cryptonite, hnix-store-core, mtl, network, nix-derivation, relude , text, time, unordered-containers @@ -143115,6 +142584,7 @@ self: { ]; description = "Remote hnix store"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Anton-Latukha lib.maintainers.sorki ]; @@ -143249,24 +142719,6 @@ self: { }) {}; "hoauth2" = callPackage - ({ mkDerivation, aeson, base, binary, bytestring, containers - , data-default, exceptions, http-conduit, http-types, microlens - , text, transformers, uri-bytestring, uri-bytestring-aeson - }: - mkDerivation { - pname = "hoauth2"; - version = "2.3.0"; - sha256 = "10y4ik96h61msapqh0rjmb5vjv7kfky6z9iffsln046an59b759v"; - libraryHaskellDepends = [ - aeson base binary bytestring containers data-default exceptions - http-conduit http-types microlens text transformers uri-bytestring - uri-bytestring-aeson - ]; - description = "Haskell OAuth2 authentication client"; - license = lib.licenses.bsd3; - }) {}; - - "hoauth2_2_6_0" = callPackage ({ mkDerivation, aeson, base, base64, binary, bytestring , containers, cryptonite, data-default, exceptions, http-conduit , http-types, memory, microlens, text, transformers, uri-bytestring @@ -143283,22 +142735,70 @@ self: { ]; description = "Haskell OAuth2 authentication client"; license = lib.licenses.mit; + }) {}; + + "hoauth2_2_7_0" = callPackage + ({ mkDerivation, aeson, base, base64, binary, bytestring + , containers, cryptonite, data-default, exceptions, hspec + , hspec-discover, http-conduit, http-types, memory, microlens, text + , transformers, uri-bytestring, uri-bytestring-aeson + }: + mkDerivation { + pname = "hoauth2"; + version = "2.7.0"; + sha256 = "06ziq5xcxlxjr4yp175qvjq6g36r8ys98prgw3c8fsxrp3cpi0c5"; + libraryHaskellDepends = [ + aeson base base64 binary bytestring containers cryptonite + data-default exceptions http-conduit http-types memory microlens + text transformers uri-bytestring uri-bytestring-aeson + ]; + testHaskellDepends = [ aeson base hspec ]; + testToolDepends = [ hspec-discover ]; + description = "Haskell OAuth2 authentication client"; + license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; }) {}; - "hoauth2-providers" = callPackage + "hoauth2-demo" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, data-default - , directory, hoauth2, http-conduit, http-types, mtl, parsec, text - , transformers, unordered-containers, uri-bytestring + , directory, hoauth2, hoauth2-providers, http-conduit, http-types + , jose-jwt, microlens, mustache, parsec, scotty, text, transformers + , unordered-containers, uri-bytestring, wai, wai-middleware-static + , warp + }: + mkDerivation { + pname = "hoauth2-demo"; + version = "1.6.0"; + sha256 = "1ypqbx19f25r1g3msj02h74zndl0bflc1y45gh4hfj3a0rz931gq"; + isLibrary = false; + isExecutable = true; + enableSeparateDataOutput = true; + executableHaskellDepends = [ + aeson base bytestring containers data-default directory hoauth2 + hoauth2-providers http-conduit http-types jose-jwt microlens + mustache parsec scotty text transformers unordered-containers + uri-bytestring wai wai-middleware-static warp + ]; + description = "hoauth2 demo application"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "hoauth2-demo"; + }) {}; + + "hoauth2-providers" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, cryptonite + , data-default, directory, hoauth2, HsOpenSSL, http-conduit + , http-types, jose-jwt, mtl, parsec, text, time, transformers + , unordered-containers, uri-bytestring }: mkDerivation { pname = "hoauth2-providers"; - version = "0.1"; - sha256 = "1qasw49nyirajiijr7lfinacgx7kbzp76x52wdfvj9km4wc9xj77"; + version = "0.2"; + sha256 = "1d53byy7gfp02dily3xas0aav2a63s32maanl9ba3pbpzlic9lvp"; libraryHaskellDepends = [ - aeson base bytestring containers data-default directory hoauth2 - http-conduit http-types mtl parsec text transformers - unordered-containers uri-bytestring + aeson base bytestring containers cryptonite data-default directory + hoauth2 HsOpenSSL http-conduit http-types jose-jwt mtl parsec text + time transformers unordered-containers uri-bytestring ]; description = "OAuth2 Identity Providers"; license = lib.licenses.mit; @@ -143313,8 +142813,8 @@ self: { }: mkDerivation { pname = "hoauth2-providers-tutorial"; - version = "0.1"; - sha256 = "0zz99sipmgg1n61zx3mc69y3gvjijnslgwywd1dsw9hnqda10k4c"; + version = "0.2"; + sha256 = "1xb25d83qq8bmvx89nhzjcak406110j3id44y4ab6rqaccmgl5xf"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -143335,8 +142835,8 @@ self: { }: mkDerivation { pname = "hoauth2-tutorial"; - version = "0.1.2"; - sha256 = "0wkyq213vmsdiwbqv5zi6kak978ayj61sf9r7ga8ry5asy5zjx64"; + version = "0.2"; + sha256 = "18mapdfx6ws3477bm63pcg4nvs1brsh75xc7jy3h4zyn99ci8ipv"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -143715,9 +143215,7 @@ self: { ]; description = "Higher order logic"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "hol-pkg"; - broken = true; }) {}; "hold-em" = callPackage @@ -143961,8 +143459,6 @@ self: { text unliftio unordered-containers uuid vector zlib ]; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "honi" = callPackage @@ -144480,6 +143976,8 @@ self: { executableToolDepends = [ alex happy ]; description = "hOpenPGP-based command-line tools"; license = lib.licenses.agpl3Plus; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hopenssl" = callPackage @@ -144597,6 +144095,8 @@ self: { ]; description = "C++ FFI generator - Code generator"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hoppy-runtime" = callPackage @@ -144613,7 +144113,6 @@ self: { description = "C++ FFI generator - Runtime support"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hoppy-std" = callPackage @@ -144628,6 +144127,7 @@ self: { ]; description = "C++ FFI generator - Standard library bindings"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; }) {}; "hops" = callPackage @@ -144717,6 +144217,51 @@ self: { broken = true; }) {}; + "horizon-gen-nix" = callPackage + ({ mkDerivation, base, Cabal-syntax, cabal2nix, containers, dhall + , directory, distribution-nixpkgs, either, horizon-spec + , language-nix, lens, optparse-applicative, path + , path-dhall-instance, pretty, silently, sydtest, text + }: + mkDerivation { + pname = "horizon-gen-nix"; + version = "0.3.1.0"; + sha256 = "1by0813yzhnzl188b7sdcy682arprhgahnivpqxkm1pfk2im92i9"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base Cabal-syntax cabal2nix containers dhall directory + distribution-nixpkgs either horizon-spec language-nix lens + optparse-applicative path path-dhall-instance pretty silently text + ]; + executableHaskellDepends = [ base directory path sydtest ]; + description = "Generate nix expressions from horizon-spec definitions"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + + "horizon-spec" = callPackage + ({ mkDerivation, base, containers, dhall, path, path-dhall-instance + , prettyprinter, sydtest, text + }: + mkDerivation { + pname = "horizon-spec"; + version = "0.4.1"; + sha256 = "1xr9x626fzw8bhrkzgv3r00cjsawav76jb68yznj1jlv91cvmxac"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers dhall path path-dhall-instance text + ]; + executableHaskellDepends = [ + base dhall prettyprinter sydtest text + ]; + description = "Horizon Stable Package Set Type Definitions"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "horizon-spec-tests"; + }) {}; + "horizontal-rule" = callPackage ({ mkDerivation, ansi-wl-pprint, base, HMock, optparse-applicative , tasty, tasty-hunit, terminal-size, text, time @@ -144775,6 +144320,24 @@ self: { license = lib.licenses.gpl3Only; }) {}; + "hosc_0_20" = callPackage + ({ mkDerivation, base, binary, blaze-builder, bytestring + , data-binary-ieee754, network, parsec, time, transformers + }: + mkDerivation { + pname = "hosc"; + version = "0.20"; + sha256 = "17pvv6rgl74ymq7pazxqia19smsga53kkg5h1i1dgfpikrmq7fz9"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + base binary blaze-builder bytestring data-binary-ieee754 network + parsec time transformers + ]; + description = "Haskell Open Sound Control"; + license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + }) {}; + "hosc-json" = callPackage ({ mkDerivation, aeson, attoparsec, base, bifunctors, bytestring , hosc, json, text, transformers, unordered-containers, utf8-string @@ -144998,7 +144561,6 @@ self: { testHaskellDepends = [ base do-notation indexed ]; description = "Non-interactive proof assistant monad for first-order logic"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hp2any-core" = callPackage @@ -145108,8 +144670,10 @@ self: { }: mkDerivation { pname = "hpack"; - version = "0.34.7"; - sha256 = "0nzqpma4cxp3xw79i5pxgjynl5iq0dq0nrw8vczwpj373kyijd0h"; + version = "0.35.0"; + sha256 = "1cii4bdn4rm2l3yw9vsv4ygn61zmalaa282iqg9rihys90nvrgf6"; + revision = "1"; + editedCabalFile = "1x0rmra2fpfzmhhw090iila2drfdmb1y28ybypmgbi0asa1zl751"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -145137,7 +144701,7 @@ self: { mainProgram = "hpack"; }) {}; - "hpack_0_35_0" = callPackage + "hpack_0_35_1" = callPackage ({ mkDerivation, aeson, base, bifunctors, bytestring, Cabal , containers, cryptonite, deepseq, directory, filepath, Glob, hspec , hspec-discover, http-client, http-client-tls, http-types, HUnit @@ -145147,10 +144711,8 @@ self: { }: mkDerivation { pname = "hpack"; - version = "0.35.0"; - sha256 = "1cii4bdn4rm2l3yw9vsv4ygn61zmalaa282iqg9rihys90nvrgf6"; - revision = "1"; - editedCabalFile = "1x0rmra2fpfzmhhw090iila2drfdmb1y28ybypmgbi0asa1zl751"; + version = "0.35.1"; + sha256 = "1hpc6bwx94v943p73l12nnncbs656f2fn7q3hb4qs13xrxygzl4g"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -145214,36 +144776,6 @@ self: { }) {}; "hpack-dhall" = callPackage - ({ mkDerivation, aeson, aeson-pretty, base, bytestring, Cabal - , dhall, dhall-json, Diff, directory, filepath, hlint, hpack - , megaparsec, microlens, optparse-applicative, prettyprinter, tasty - , tasty-golden, text, transformers, utf8-string, yaml - }: - mkDerivation { - pname = "hpack-dhall"; - version = "0.5.4"; - sha256 = "0yhf9b1nadcz98bq84jzb80mc1w4a6sph5d6c4pnf2xj2akdxcxf"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson aeson-pretty base bytestring dhall dhall-json filepath hpack - megaparsec microlens prettyprinter text transformers yaml - ]; - executableHaskellDepends = [ - aeson aeson-pretty base bytestring dhall dhall-json filepath hpack - megaparsec microlens optparse-applicative prettyprinter text - transformers yaml - ]; - testHaskellDepends = [ - aeson aeson-pretty base bytestring Cabal dhall dhall-json Diff - directory filepath hlint hpack megaparsec microlens prettyprinter - tasty tasty-golden text transformers utf8-string yaml - ]; - description = "hpack's dhalling"; - license = lib.licenses.bsd3; - }) {}; - - "hpack-dhall_0_5_7" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, bytestring, Cabal , dhall, dhall-json, Diff, directory, filepath, hpack, megaparsec , microlens, optparse-applicative, prettyprinter, tasty @@ -145272,6 +144804,7 @@ self: { description = "hpack's dhalling"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hpaco" = callPackage @@ -145438,6 +144971,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Alternative to 'directory' package with ByteString based filepaths"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hpath-filepath" = callPackage @@ -145466,6 +145000,7 @@ self: { ]; description = "High-level IO operations on files/directories"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hpath-posix" = callPackage @@ -145553,6 +145088,8 @@ self: { pname = "hpc-lcov"; version = "1.1.0"; sha256 = "009z1i0ddjx7sazybirrpw99675p1fyl84ykg4dyypa7rz81vv3z"; + revision = "1"; + editedCabalFile = "0s1zx98fsa11kl4m34vrcs421pbp5f8za29xl59zp794632jng88"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base containers hpc ]; @@ -145903,7 +145440,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "hprotoc"; - broken = true; }) {}; "hprotoc-fork" = callPackage @@ -146122,7 +145658,6 @@ self: { description = "Quantitative Library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) gsl;}; "hquantlib" = callPackage @@ -146154,7 +145689,6 @@ self: { license = "LGPL"; hydraPlatforms = lib.platforms.none; mainProgram = "mctest"; - broken = true; }) {}; "hquantlib-time" = callPackage @@ -146166,6 +145700,8 @@ self: { libraryHaskellDepends = [ base time ]; description = "HQuantLib Time is a business calendar functions extracted from HQuantLib"; license = "LGPL"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hquery" = callPackage @@ -146364,6 +145900,7 @@ self: { ]; description = "A Riemann Client for Haskell"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "hriemann-exe"; }) {}; @@ -146542,20 +146079,18 @@ self: { }) {}; "hs-cdb" = callPackage - ({ mkDerivation, array, base, bytestring, bytestring-mmap - , directory, filepath, mtl + ({ mkDerivation, array, base, bytestring, directory, filepath, mmap + , mtl }: mkDerivation { pname = "hs-cdb"; - version = "0.1.1"; - sha256 = "07pkz35mmk7qaa9ahfxmj4dddja23ksn7dm1fp8g9v8z8d9r9zl0"; + version = "0.1.2"; + sha256 = "16mrj95f72f9n20szn1jk59y0hslqp22i9hm82swjymg7lykd9xf"; libraryHaskellDepends = [ - array base bytestring bytestring-mmap directory filepath mtl + array base bytestring directory filepath mmap mtl ]; description = "A library for reading CDB (Constant Database) files"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hs-conllu" = callPackage @@ -146704,8 +146239,6 @@ self: { libraryHaskellDepends = [ base dual tagged transformers ]; description = "Functors from products of Haskell and its dual to Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hs-gchart" = callPackage @@ -146778,7 +146311,6 @@ self: { libraryHaskellDepends = [ base hs-functors ]; description = "Indexed applicative functors and monads"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hs-java" = callPackage @@ -147039,8 +146571,6 @@ self: { unliftio vault ]; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hs-opentelemetry-instrumentation-http-client" = callPackage @@ -147343,7 +146873,6 @@ self: { libraryHaskellDepends = [ base hs-functors ]; description = "Profunctors from Haskell to Haskell"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hs-re" = callPackage @@ -147877,7 +147406,6 @@ self: { description = "OASIS Security Assertion Markup Language (SAML) V2.0"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) libxml2;}; "hsass" = callPackage @@ -148091,8 +147619,8 @@ self: { }: mkDerivation { pname = "hsc3"; - version = "0.19.1"; - sha256 = "0yz8h83hrnw28bwqqaa792w89y2pz1lkv3zwmwj9p2z8xv0hf14n"; + version = "0.20"; + sha256 = "1pi2zzcz6xrj5w0ql5g7z6qf2vbchixc871if2yqna8wndakhcc8"; enableSeparateDataOutput = true; libraryHaskellDepends = [ array base binary bytestring containers data-binary-ieee754 @@ -148101,6 +147629,8 @@ self: { ]; description = "Haskell SuperCollider"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hsc3-auditor" = callPackage @@ -148130,7 +147660,6 @@ self: { description = "haskell supercollider cairo drawing"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-data" = callPackage @@ -148162,7 +147691,6 @@ self: { description = "Haskell SuperCollider Unit Generator Database"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-dot" = callPackage @@ -148176,7 +147704,6 @@ self: { description = "haskell supercollider graph drawing"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-forth" = callPackage @@ -148245,7 +147772,6 @@ self: { description = "Haskell SuperCollider Language"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-lisp" = callPackage @@ -148305,7 +147831,6 @@ self: { description = "Create and control scsynth processes"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-rec" = callPackage @@ -148319,7 +147844,6 @@ self: { description = "Haskell SuperCollider Record Variants"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-rw" = callPackage @@ -148410,7 +147934,6 @@ self: { description = "Unsafe Haskell SuperCollider"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsc3-utils" = callPackage @@ -148569,8 +148092,6 @@ self: { ]; description = "Describe schemas for your Haskell data types"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hschema-aeson" = callPackage @@ -148601,6 +148122,7 @@ self: { description = "Describe schemas for your Haskell data types"; license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hschema-prettyprinter" = callPackage @@ -148619,7 +148141,6 @@ self: { ]; description = "Describe schemas for your Haskell data types"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; }) {}; "hschema-quickcheck" = callPackage @@ -148637,7 +148158,6 @@ self: { ]; description = "Describe schemas for your Haskell data types"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; }) {}; "hscim" = callPackage @@ -149065,6 +148585,7 @@ self: { ]; description = "EXIF handling library in pure Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hsfacter" = callPackage @@ -149533,29 +149054,6 @@ self: { }) {}; "hslua" = callPackage - ({ mkDerivation, base, bytestring, containers, exceptions - , hslua-classes, hslua-core, hslua-marshalling - , hslua-objectorientation, hslua-packaging, mtl, tasty, tasty-hslua - , tasty-hunit, text - }: - mkDerivation { - pname = "hslua"; - version = "2.1.0"; - sha256 = "0adii64aaq20dmsxkrac8smgwa9vm1ld1rpzz3m33vyyp1yfsjka"; - libraryHaskellDepends = [ - base bytestring containers exceptions hslua-classes hslua-core - hslua-marshalling hslua-objectorientation hslua-packaging mtl text - ]; - testHaskellDepends = [ - base bytestring containers exceptions hslua-classes hslua-core - hslua-marshalling hslua-objectorientation hslua-packaging mtl tasty - tasty-hslua tasty-hunit text - ]; - description = "Bindings to Lua, an embeddable scripting language"; - license = lib.licenses.mit; - }) {}; - - "hslua_2_2_1" = callPackage ({ mkDerivation, base, bytestring, containers, exceptions , hslua-aeson, hslua-classes, hslua-core, hslua-marshalling , hslua-objectorientation, hslua-packaging, lua, lua-arbitrary, mtl @@ -149579,33 +149077,9 @@ self: { ]; description = "Bindings to Lua, an embeddable scripting language"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hslua-aeson" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, hashable - , hslua-core, hslua-marshalling, mtl, QuickCheck - , quickcheck-instances, scientific, tasty, tasty-quickcheck, text - , unordered-containers, vector - }: - mkDerivation { - pname = "hslua-aeson"; - version = "2.1.0"; - sha256 = "0x966djzb9blrs586407qx6lz8bh23s048jv9nbgzy99qwxm20db"; - libraryHaskellDepends = [ - aeson base bytestring containers hashable hslua-core - hslua-marshalling mtl scientific text unordered-containers vector - ]; - testHaskellDepends = [ - aeson base bytestring containers hashable hslua-core - hslua-marshalling mtl QuickCheck quickcheck-instances scientific - tasty tasty-quickcheck text unordered-containers vector - ]; - description = "Allow aeson data types to be used with Lua"; - license = lib.licenses.mit; - }) {}; - - "hslua-aeson_2_2_1" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, hashable , hslua-core, hslua-marshalling, mtl, QuickCheck , quickcheck-instances, scientific, tasty, tasty-quickcheck, text @@ -149626,33 +149100,9 @@ self: { ]; description = "Allow aeson data types to be used with Lua"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hslua-classes" = callPackage - ({ mkDerivation, base, bytestring, containers, exceptions - , hslua-core, hslua-marshalling, lua-arbitrary, QuickCheck - , quickcheck-instances, tasty, tasty-hslua, tasty-hunit - , tasty-quickcheck, text - }: - mkDerivation { - pname = "hslua-classes"; - version = "2.1.0"; - sha256 = "0gz30ppa7fjm555mxmwfjq767wn6z60jkw36sdmryrby1raspz4s"; - libraryHaskellDepends = [ - base bytestring containers exceptions hslua-core hslua-marshalling - text - ]; - testHaskellDepends = [ - base bytestring containers exceptions hslua-core hslua-marshalling - lua-arbitrary QuickCheck quickcheck-instances tasty tasty-hslua - tasty-hunit tasty-quickcheck text - ]; - description = "Type classes for HsLua"; - license = lib.licenses.mit; - }) {}; - - "hslua-classes_2_2_0" = callPackage ({ mkDerivation, base, bytestring, containers, exceptions , hslua-core, hslua-marshalling, lua-arbitrary, QuickCheck , quickcheck-instances, tasty, tasty-hslua, tasty-hunit @@ -149673,7 +149123,6 @@ self: { ]; description = "Type classes for HsLua"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hslua-cli" = callPackage @@ -149694,26 +149143,6 @@ self: { }) {}; "hslua-core" = callPackage - ({ mkDerivation, base, bytestring, exceptions, lua, lua-arbitrary - , mtl, QuickCheck, quickcheck-instances, tasty, tasty-hunit - , tasty-quickcheck, text - }: - mkDerivation { - pname = "hslua-core"; - version = "2.1.0"; - sha256 = "1iaii879b13j8a8lgv78wja85ik2y5xlkv1mzckjl4nqn91968wq"; - libraryHaskellDepends = [ - base bytestring exceptions lua mtl text - ]; - testHaskellDepends = [ - base bytestring exceptions lua lua-arbitrary mtl QuickCheck - quickcheck-instances tasty tasty-hunit tasty-quickcheck text - ]; - description = "Bindings to Lua, an embeddable scripting language"; - license = lib.licenses.mit; - }) {}; - - "hslua-core_2_2_1" = callPackage ({ mkDerivation, base, bytestring, exceptions, lua, lua-arbitrary , mtl, QuickCheck, quickcheck-instances, tasty, tasty-hunit , tasty-quickcheck, text @@ -149731,7 +149160,6 @@ self: { ]; description = "Bindings to Lua, an embeddable scripting language"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hslua-examples" = callPackage @@ -149749,6 +149177,8 @@ self: { ]; description = "Examples of how to combine Haskell and Lua"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hslua-list" = callPackage @@ -149766,27 +149196,6 @@ self: { }) {}; "hslua-marshalling" = callPackage - ({ mkDerivation, base, bytestring, containers, hslua-core - , lua-arbitrary, mtl, QuickCheck, quickcheck-instances, tasty - , tasty-hslua, tasty-hunit, tasty-quickcheck, text - }: - mkDerivation { - pname = "hslua-marshalling"; - version = "2.1.0"; - sha256 = "0rp2bbk3smmx223c8x781311s29c0dhk0c5z3p8z1vxr3m3lhz1c"; - libraryHaskellDepends = [ - base bytestring containers hslua-core mtl text - ]; - testHaskellDepends = [ - base bytestring containers hslua-core lua-arbitrary mtl QuickCheck - quickcheck-instances tasty tasty-hslua tasty-hunit tasty-quickcheck - text - ]; - description = "Marshalling of values between Haskell and Lua"; - license = lib.licenses.mit; - }) {}; - - "hslua-marshalling_2_2_1" = callPackage ({ mkDerivation, base, bytestring, containers, hslua-core , lua-arbitrary, mtl, QuickCheck, quickcheck-instances, tasty , tasty-hslua, tasty-hunit, tasty-quickcheck, text @@ -149805,7 +149214,6 @@ self: { ]; description = "Marshalling of values between Haskell and Lua"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hslua-module-doclayout" = callPackage @@ -149924,29 +149332,6 @@ self: { }) {}; "hslua-objectorientation" = callPackage - ({ mkDerivation, base, bytestring, containers, exceptions - , hslua-core, hslua-marshalling, lua-arbitrary, mtl, QuickCheck - , quickcheck-instances, tasty, tasty-hslua, tasty-hunit - , tasty-quickcheck, text - }: - mkDerivation { - pname = "hslua-objectorientation"; - version = "2.1.0"; - sha256 = "01ghqsaknl4b8l3f6src8q7b54r5crmja62mhfwhz8a35px3rzrx"; - libraryHaskellDepends = [ - base bytestring containers exceptions hslua-core hslua-marshalling - mtl text - ]; - testHaskellDepends = [ - base bytestring containers exceptions hslua-core hslua-marshalling - lua-arbitrary mtl QuickCheck quickcheck-instances tasty tasty-hslua - tasty-hunit tasty-quickcheck text - ]; - description = "Object orientation tools for HsLua"; - license = lib.licenses.mit; - }) {}; - - "hslua-objectorientation_2_2_1" = callPackage ({ mkDerivation, base, bytestring, containers, exceptions , hslua-core, hslua-marshalling, lua-arbitrary, mtl, QuickCheck , quickcheck-instances, tasty, tasty-hslua, tasty-hunit @@ -149967,31 +149352,9 @@ self: { ]; description = "Object orientation tools for HsLua"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hslua-packaging" = callPackage - ({ mkDerivation, base, bytestring, containers, hslua-core - , hslua-marshalling, hslua-objectorientation, mtl, tasty - , tasty-hslua, tasty-hunit, text - }: - mkDerivation { - pname = "hslua-packaging"; - version = "2.1.0"; - sha256 = "0n8vhfi59q6dzcvi4fgsjp8w0slbl8l2s5l6rxgypb6vqgm759l9"; - libraryHaskellDepends = [ - base containers hslua-core hslua-marshalling - hslua-objectorientation mtl text - ]; - testHaskellDepends = [ - base bytestring hslua-core hslua-marshalling - hslua-objectorientation mtl tasty tasty-hslua tasty-hunit text - ]; - description = "Utilities to build Lua modules"; - license = lib.licenses.mit; - }) {}; - - "hslua-packaging_2_2_1" = callPackage ({ mkDerivation, base, bytestring, containers, hslua-core , hslua-marshalling, hslua-objectorientation, mtl, tasty , tasty-hslua, tasty-hunit, text @@ -150010,7 +149373,6 @@ self: { ]; description = "Utilities to build Lua modules"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hsluv-haskell" = callPackage @@ -150125,6 +149487,7 @@ self: { libraryHaskellDepends = [ base hsndfile storablevector ]; description = "Haskell bindings for libsndfile (Data.StorableVector interface)"; license = lib.licenses.lgpl2Only; + hydraPlatforms = lib.platforms.none; }) {}; "hsndfile-vector" = callPackage @@ -150206,6 +149569,7 @@ self: { description = "Haskell NSQ client"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hsntp" = callPackage @@ -150390,8 +149754,8 @@ self: { }: mkDerivation { pname = "hspec"; - version = "2.8.5"; - sha256 = "0s6nc0nvf3qr2qdam12m6b8qixwzms0m2r9xwjx71dkjwg7nnga1"; + version = "2.9.7"; + sha256 = "092sfqjkargxxszp9jjqa8ldjz0xv34jwn6k21q59ys5ckvsrpc1"; libraryHaskellDepends = [ base hspec-core hspec-discover hspec-expectations QuickCheck ]; @@ -150399,14 +149763,14 @@ self: { license = lib.licenses.mit; }) {}; - "hspec_2_10_6" = callPackage + "hspec_2_10_8" = callPackage ({ mkDerivation, base, hspec-core, hspec-discover , hspec-expectations, QuickCheck }: mkDerivation { pname = "hspec"; - version = "2.10.6"; - sha256 = "129yk1ar962xf02axbdbcvx2icw09b2b6q7q1639391aikisivqz"; + version = "2.10.8"; + sha256 = "13g46fk7hcnk3058pb2wwq257pi8628qaa9md9sfw5rlw878z25r"; libraryHaskellDepends = [ base hspec-core hspec-discover hspec-expectations QuickCheck ]; @@ -150457,20 +149821,6 @@ self: { }) {}; "hspec-contrib" = callPackage - ({ mkDerivation, base, hspec, hspec-core, HUnit, QuickCheck }: - mkDerivation { - pname = "hspec-contrib"; - version = "0.5.1"; - sha256 = "0hhzxaa3fxz5mk5qcsrnfr98a7bn3szx2ydgr0x9mbqmm1jg06rc"; - revision = "2"; - editedCabalFile = "12jwqbddqx8j69b04q3kzwvnkwh6l9cv8b5fvph4n6nrqnk81mp9"; - libraryHaskellDepends = [ base hspec-core HUnit ]; - testHaskellDepends = [ base hspec hspec-core HUnit QuickCheck ]; - description = "Contributed functionality for Hspec"; - license = lib.licenses.mit; - }) {}; - - "hspec-contrib_0_5_1_1" = callPackage ({ mkDerivation, base, hspec, hspec-core, hspec-discover, HUnit , QuickCheck }: @@ -150483,7 +149833,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Contributed functionality for Hspec"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "hspec-core_2_7_10" = callPackage @@ -150518,27 +149867,25 @@ self: { "hspec-core" = callPackage ({ mkDerivation, ansi-terminal, array, base, base-orphans - , call-stack, clock, deepseq, directory, filepath + , call-stack, clock, deepseq, directory, filepath, ghc, ghc-boot-th , hspec-expectations, hspec-meta, HUnit, process, QuickCheck , quickcheck-io, random, setenv, silently, stm, temporary , tf-random, transformers }: mkDerivation { pname = "hspec-core"; - version = "2.8.5"; - sha256 = "0hy3qw7qvix5899hkq96mqda2ridif2g3mwdn8sxg2wlhbcvzfjm"; - revision = "1"; - editedCabalFile = "1nwki2mb64akmc7585cmjhiizwm090j7gqx5js1h9rmvl7z2zfbx"; + version = "2.9.7"; + sha256 = "040rzqiqwkp373jjpij8lkmv08pp2ya92zzcf95bw8px215rp08n"; libraryHaskellDepends = [ ansi-terminal array base call-stack clock deepseq directory - filepath hspec-expectations HUnit QuickCheck quickcheck-io random - setenv stm tf-random transformers + filepath ghc ghc-boot-th hspec-expectations HUnit QuickCheck + quickcheck-io random setenv stm tf-random transformers ]; testHaskellDepends = [ ansi-terminal array base base-orphans call-stack clock deepseq - directory filepath hspec-expectations hspec-meta HUnit process - QuickCheck quickcheck-io random setenv silently stm temporary - tf-random transformers + directory filepath ghc ghc-boot-th hspec-expectations hspec-meta + HUnit process QuickCheck quickcheck-io random setenv silently stm + temporary tf-random transformers ]; testToolDepends = [ hspec-meta ]; testTarget = "--test-option=--skip --test-option='Test.Hspec.Core.Runner.hspecResult runs specs in parallel'"; @@ -150546,27 +149893,27 @@ self: { license = lib.licenses.mit; }) {}; - "hspec-core_2_10_6" = callPackage + "hspec-core_2_10_8" = callPackage ({ mkDerivation, ansi-terminal, array, base, base-orphans - , call-stack, deepseq, directory, filepath, ghc, ghc-boot-th + , call-stack, deepseq, directory, filepath, haskell-lexer , hspec-expectations, hspec-meta, HUnit, process, QuickCheck , quickcheck-io, random, setenv, silently, stm, temporary , tf-random, time, transformers }: mkDerivation { pname = "hspec-core"; - version = "2.10.6"; - sha256 = "1cz02l3xkj91f41ghz3mkm5nxl6zaj5kgam63rqp8f0yxzhfrvwm"; + version = "2.10.8"; + sha256 = "0bka7r8b2qh82sxnz5mcfw2swl4k2v3q97yb0n1rhs1g444lfcqn"; libraryHaskellDepends = [ - ansi-terminal array base call-stack deepseq directory filepath ghc - ghc-boot-th hspec-expectations HUnit process QuickCheck + ansi-terminal array base call-stack deepseq directory filepath + haskell-lexer hspec-expectations HUnit process QuickCheck quickcheck-io random setenv stm tf-random time transformers ]; testHaskellDepends = [ ansi-terminal array base base-orphans call-stack deepseq directory - filepath ghc ghc-boot-th hspec-expectations hspec-meta HUnit - process QuickCheck quickcheck-io random setenv silently stm - temporary tf-random time transformers + filepath haskell-lexer hspec-expectations hspec-meta HUnit process + QuickCheck quickcheck-io random setenv silently stm temporary + tf-random time transformers ]; testToolDepends = [ hspec-meta ]; testTarget = "--test-option=--skip --test-option='Test.Hspec.Core.Runner.hspecResult runs specs in parallel'"; @@ -150621,8 +149968,8 @@ self: { }: mkDerivation { pname = "hspec-discover"; - version = "2.8.5"; - sha256 = "031nay0zmzvpiax3wa990qj74sqrh27vq1lljiamwbzr3b68vy04"; + version = "2.9.7"; + sha256 = "0536kdxjw6p8b6gcwvmr22jbmb6cgzbddi0fkd01b2m847z37sb5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base directory filepath ]; @@ -150637,14 +149984,14 @@ self: { maintainers = [ lib.maintainers.maralorn ]; }) {}; - "hspec-discover_2_10_6" = callPackage + "hspec-discover_2_10_8" = callPackage ({ mkDerivation, base, directory, filepath, hspec-meta, mockery , QuickCheck }: mkDerivation { pname = "hspec-discover"; - version = "2.10.6"; - sha256 = "0x7yx55l2cngg4vw2k4mirajbprpa7bkx8rnyvyads8c6f97s71v"; + version = "2.10.8"; + sha256 = "032s5mfr9sw2bgdi2l6fy8jdwm79nr896dw1ha16m94m8596vmph"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base directory filepath ]; @@ -150886,30 +150233,6 @@ self: { }) {}; "hspec-junit-formatter" = callPackage - ({ mkDerivation, base, conduit, containers, directory, exceptions - , filepath, hspec, hspec-core, markdown-unlit, temporary, text - , time, xml-conduit, xml-types - }: - mkDerivation { - pname = "hspec-junit-formatter"; - version = "1.0.3.0"; - sha256 = "06003bw98bp9jl379463x1bk3ds30spsmg9h4lvr367k6diyi6ax"; - libraryHaskellDepends = [ - base conduit containers directory exceptions filepath hspec-core - text time xml-conduit xml-types - ]; - testHaskellDepends = [ - base containers filepath hspec hspec-core markdown-unlit temporary - text xml-conduit - ]; - testToolDepends = [ markdown-unlit ]; - description = "A JUnit XML runner/formatter for hspec"; - license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {}; - - "hspec-junit-formatter_1_1_0_2" = callPackage ({ mkDerivation, base, conduit, containers, directory, exceptions , filepath, hspec, hspec-core, iso8601-time, markdown-unlit , temporary, text, time, xml-conduit, xml-types @@ -150974,7 +150297,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "hspec-meta" = callPackage + "hspec-meta_2_7_8" = callPackage ({ mkDerivation, ansi-terminal, array, base, call-stack, clock , deepseq, directory, filepath, QuickCheck, quickcheck-io, random , setenv, stm, time, transformers @@ -150997,6 +150320,33 @@ self: { ]; description = "A version of Hspec which is used to test Hspec itself"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "hspec-meta-discover"; + }) {}; + + "hspec-meta" = callPackage + ({ mkDerivation, ansi-terminal, array, base, call-stack, clock + , deepseq, directory, filepath, ghc, ghc-boot-th, QuickCheck + , quickcheck-io, random, setenv, stm, time, transformers + }: + mkDerivation { + pname = "hspec-meta"; + version = "2.9.3"; + sha256 = "1raxwpsmcijl3x2h5naw6aydhbiknxvhj3x7v384bi1rqi51ainm"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + ansi-terminal array base call-stack clock deepseq directory + filepath ghc ghc-boot-th QuickCheck quickcheck-io random setenv stm + time transformers + ]; + executableHaskellDepends = [ + ansi-terminal array base call-stack clock deepseq directory + filepath ghc ghc-boot-th QuickCheck quickcheck-io random setenv + time transformers + ]; + description = "A version of Hspec which is used to test Hspec itself"; + license = lib.licenses.mit; mainProgram = "hspec-meta-discover"; }) {}; @@ -151406,6 +150756,7 @@ self: { description = "Write end2end web application tests using webdriver and hspec"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hspec2" = callPackage @@ -151433,6 +150784,7 @@ self: { testHaskellDepends = [ base hspec QuickCheck QuickCheckVariant ]; description = "Spec for testing properties"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; }) {}; "hspkcs11" = callPackage @@ -151466,6 +150818,22 @@ self: { license = lib.licenses.publicDomain; }) {}; + "hspray" = callPackage + ({ mkDerivation, base, containers, hashable, numeric-prelude, tasty + , tasty-hunit, text, unordered-containers + }: + mkDerivation { + pname = "hspray"; + version = "0.1.1.0"; + sha256 = "1x8vya93aqcbipw6m0rwza8xk59im49bms4w5525s24mw82cnsjq"; + libraryHaskellDepends = [ + base containers hashable numeric-prelude text unordered-containers + ]; + testHaskellDepends = [ base tasty tasty-hunit ]; + description = "Multivariate polynomials"; + license = lib.licenses.gpl3Only; + }) {}; + "hspread" = callPackage ({ mkDerivation, base, binary, bytestring, containers , extensible-exceptions, network @@ -152251,7 +151619,6 @@ self: { ]; description = "hsp+jmacro support"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hsx-xhtml" = callPackage @@ -152332,7 +151699,6 @@ self: { description = "syslog over TCP"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hsyslog-udp" = callPackage @@ -152349,6 +151715,8 @@ self: { testHaskellDepends = [ base hspec time ]; description = "Log to syslog over a network via UDP"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hszephyr" = callPackage @@ -152444,7 +151812,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "htar"; - broken = true; }) {}; "htaut" = callPackage @@ -152573,8 +151940,8 @@ self: { }: mkDerivation { pname = "html-charset"; - version = "0.1.0"; - sha256 = "05d0syzpxbr3y8hkk35pfpsfm8gwg5zwb72l89frrl7i6cv1b24i"; + version = "0.1.1"; + sha256 = "1561m08j6davlwg4mzv6lr42536hpgmcrxkyvg265lhwrzizi4nk"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -152588,9 +151955,7 @@ self: { ]; description = "Determine character encoding of HTML documents/fragments"; license = lib.licenses.lgpl21Only; - hydraPlatforms = lib.platforms.none; mainProgram = "html-charset"; - broken = true; }) {}; "html-conduit" = callPackage @@ -152727,8 +152092,6 @@ self: { ]; description = "A high-performance HTML tokenizer"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "html-parse-util" = callPackage @@ -152740,7 +152103,6 @@ self: { libraryHaskellDepends = [ attoparsec base html-parse text ]; description = "Utility functions for working with html-parse"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "html-presentation-text" = callPackage @@ -152990,6 +152352,7 @@ self: { description = "Haskell Music Typesetting"; license = "GPL"; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "htsn" = callPackage @@ -153150,8 +152513,8 @@ self: { pname = "http-api-data-qq"; version = "0.1.0.0"; sha256 = "1lvfdbprdwq09k1wkjfvvkpi79053dc4kzkv4g1cx94qb1flbd7a"; - revision = "1"; - editedCabalFile = "1s7swrw42i5zpj99z5559480fi0zsnf1j1g0qhs536fjqs2bdfx4"; + revision = "2"; + editedCabalFile = "03gwjxnd0kcnh18bzlwkb8yivmcjrl8wb0v82y4jqvjy19d61d0n"; libraryHaskellDepends = [ base http-api-data template-haskell text ]; @@ -153358,22 +152721,6 @@ self: { }) {}; "http-client-restricted" = callPackage - ({ mkDerivation, base, connection, data-default, http-client - , http-client-tls, network, network-bsd, utf8-string - }: - mkDerivation { - pname = "http-client-restricted"; - version = "0.0.4"; - sha256 = "0jljvfjbdjxj61m6nznysbh9y7nszrzmdv0i8ndxgshnmc19q9h1"; - libraryHaskellDepends = [ - base connection data-default http-client http-client-tls network - network-bsd utf8-string - ]; - description = "restricting the servers that http-client will use"; - license = lib.licenses.mit; - }) {}; - - "http-client-restricted_0_0_5" = callPackage ({ mkDerivation, base, connection, data-default, http-client , http-client-tls, network, network-bsd, utf8-string }: @@ -153387,7 +152734,6 @@ self: { ]; description = "restricting the servers that http-client will use"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "http-client-rustls" = callPackage @@ -153678,6 +153024,7 @@ self: { ]; description = "A library for encoding and decoding bodies of HTTP messages"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "http-enumerator" = callPackage @@ -153781,6 +153128,8 @@ self: { ]; description = "A low-level HTTP library"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "http-link-header" = callPackage @@ -153902,6 +153251,7 @@ self: { description = "A type unsafe http library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "http-pony-serve-wai" = callPackage @@ -154281,8 +153631,6 @@ self: { testHaskellDepends = [ base ]; description = "A native HTTP2 client library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "http2-client-exe" = callPackage @@ -154304,6 +153652,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "http2-client-exe"; + broken = true; }) {}; "http2-client-grpc" = callPackage @@ -154341,7 +153690,6 @@ self: { description = "Encoders based on `proto-lens` for gRPC over HTTP2"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "http2-grpc-proto3-wire" = callPackage @@ -154375,6 +153723,8 @@ self: { ]; description = "Types for gRPC over HTTP2 common for client and servers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "http3" = callPackage @@ -154914,7 +154264,6 @@ self: { ]; description = "Unpacker tool with DWIM"; license = "GPL"; - hydraPlatforms = lib.platforms.none; mainProgram = "hunp"; }) {}; @@ -154932,8 +154281,6 @@ self: { benchmarkPkgconfigDepends = [ hunspell ]; description = "Hunspell thread-safe FFI bindings for spell checking"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) hunspell;}; "hunt-searchengine" = callPackage @@ -155366,10 +154713,8 @@ self: { }: mkDerivation { pname = "hw-balancedparens"; - version = "0.4.1.2"; - sha256 = "163jvw8nnhf3q3h6c16hjdkdzp6y3l2hyvk7hzynhylifg7kki95"; - revision = "2"; - editedCabalFile = "0m3q539nlcfgmxir78vzsyh3c9pf10hx2czh1d16ih1p52mhwbjd"; + version = "0.4.1.3"; + sha256 = "0cp8nzm99ap0j8qzsn15rxcvxa3k6bywqx0y5ccflpvqysd88wfc"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -155579,7 +154924,9 @@ self: { ]; description = "File Dump"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hw-dump"; + broken = true; }) {}; "hw-eliasfano" = callPackage @@ -155875,6 +155222,8 @@ self: { ]; description = "Lens for hw-json"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hw-json-simd" = callPackage @@ -155904,6 +155253,32 @@ self: { mainProgram = "hw-json-simd"; }) {}; + "hw-json-simd_0_1_1_2" = callPackage + ({ mkDerivation, base, bytestring, c2hs, doctest, doctest-discover + , hw-prim, lens, optparse-applicative, transformers, vector + }: + mkDerivation { + pname = "hw-json-simd"; + version = "0.1.1.2"; + sha256 = "03g2gwmkp6v7b0vf4x8bh4qk91ghr0av5x3c9paj3rp3igycccd6"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base bytestring hw-prim lens vector ]; + libraryToolDepends = [ c2hs ]; + executableHaskellDepends = [ + base bytestring hw-prim lens optparse-applicative vector + ]; + testHaskellDepends = [ + base bytestring doctest doctest-discover hw-prim lens transformers + vector + ]; + testToolDepends = [ doctest-discover ]; + description = "SIMD-based JSON semi-indexer"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "hw-json-simd"; + }) {}; + "hw-json-simple-cursor" = callPackage ({ mkDerivation, base, bytestring, criterion, directory, doctest , doctest-discover, generic-lens, hedgehog, hspec, hspec-discover @@ -156002,7 +155377,6 @@ self: { testHaskellDepends = [ base hedgehog hspec hw-hspec-hedgehog ]; description = "Avro support for Kafka infrastructure"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "hw-kafka-client" = callPackage @@ -156096,8 +155470,6 @@ self: { testToolDepends = [ doctest-discover hspec-discover ]; description = "Combinators for lazy IO"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hw-mquery" = callPackage @@ -156247,7 +155619,9 @@ self: { description = "Primitive support for bit manipulation"; license = lib.licenses.bsd3; platforms = lib.platforms.x86; + hydraPlatforms = lib.platforms.none; mainProgram = "hw-prim-bits-exe"; + broken = true; }) {}; "hw-rankselect" = callPackage @@ -156352,6 +155726,39 @@ self: { license = lib.licenses.bsd3; }) {}; + "hw-simd_0_1_2_2" = callPackage + ({ mkDerivation, base, bits-extra, bytestring, c2hs, cassava + , containers, criterion, deepseq, directory, doctest + , doctest-discover, hedgehog, hspec, hspec-discover, hw-bits + , hw-hedgehog, hw-hspec-hedgehog, hw-prim, hw-rankselect + , hw-rankselect-base, lens, mmap, text, transformers, vector + }: + mkDerivation { + pname = "hw-simd"; + version = "0.1.2.2"; + sha256 = "0ipcrv19xwmq6znbmwmzrjahmymmcmpbs7hpx0183hrwbx2hyhqx"; + libraryHaskellDepends = [ + base bits-extra bytestring deepseq hw-bits hw-prim hw-rankselect + hw-rankselect-base transformers vector + ]; + libraryToolDepends = [ c2hs ]; + testHaskellDepends = [ + base bits-extra bytestring deepseq directory doctest + doctest-discover hedgehog hspec hw-bits hw-hedgehog + hw-hspec-hedgehog hw-prim hw-rankselect hw-rankselect-base lens + text vector + ]; + testToolDepends = [ doctest-discover hspec-discover ]; + benchmarkHaskellDepends = [ + base bits-extra bytestring cassava containers criterion deepseq + directory hw-bits hw-prim hw-rankselect hw-rankselect-base mmap + transformers vector + ]; + description = "SIMD library"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "hw-simd-cli" = callPackage ({ mkDerivation, base, bits-extra, bytestring, containers, deepseq , directory, doctest, doctest-discover, generic-lens, hw-bits @@ -156380,7 +155787,9 @@ self: { testToolDepends = [ doctest-discover ]; description = "SIMD library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hw-simd"; + broken = true; }) {}; "hw-streams" = callPackage @@ -156468,7 +155877,9 @@ self: { testToolDepends = [ hspec-discover ]; description = "Library for creating and extracting tar archives"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "hw-tar"; + broken = true; }) {}; "hw-uri" = callPackage @@ -156904,8 +156315,6 @@ self: { ]; description = "Cache for HXT XML Documents and other binary data"; license = "unknown"; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hxt-charproperties" = callPackage @@ -157195,6 +156604,29 @@ self: { license = lib.licenses.bsd3; }) {}; + "hydra" = callPackage + ({ mkDerivation, aeson, aeson-pretty, base, bytestring, containers + , directory, filepath, hspec, hspec-discover, HsYAML, HUnit + , QuickCheck, scientific, split, text, unordered-containers, vector + }: + mkDerivation { + pname = "hydra"; + version = "0.1.1"; + sha256 = "1ljr6id1z4ym6ipmjhz1msmnqfbsj1z5klhx27dhxwmbfv5ndhyn"; + libraryHaskellDepends = [ + aeson aeson-pretty base bytestring containers directory filepath + HsYAML scientific split text unordered-containers vector + ]; + testHaskellDepends = [ + aeson aeson-pretty base bytestring containers directory filepath + hspec hspec-discover HsYAML HUnit QuickCheck scientific split text + unordered-containers vector + ]; + testToolDepends = [ hspec-discover ]; + description = "Type-aware transformations for data and programs"; + license = lib.licenses.asl20; + }) {}; + "hydra-hs" = callPackage ({ mkDerivation, base, hmatrix, sixense_x64 }: mkDerivation { @@ -157523,6 +156955,8 @@ self: { libraryHaskellDepends = [ base blaze-html deepseq text ]; description = "Display class for the HyperHaskell graphical Haskell interpreter"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hyper-extra" = callPackage @@ -157538,6 +156972,7 @@ self: { ]; description = "Display instances for the HyperHaskell graphical Haskell interpreter"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "hyper-haskell-server" = callPackage @@ -157559,7 +156994,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "hyper-haskell-server"; - broken = true; }) {}; "hyperdrive" = callPackage @@ -157606,22 +157040,20 @@ self: { }: mkDerivation { pname = "hypergeomatrix"; - version = "1.1.0.0"; - sha256 = "1463xpbm3q8ifnjsgddfplpsjnzzfksmpy8g21l2zqmcvghb64bn"; + version = "1.1.0.1"; + sha256 = "02pmjjbdnl5g1zhzs1cb32k1z5g3xkdkpz1idx8xf5gnyxcssy38"; libraryHaskellDepends = [ array base containers cyclotomic ]; testHaskellDepends = [ base tasty tasty-hunit ]; description = "Hypergeometric function of a matrix argument"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "hypergeometric" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "hypergeometric"; - version = "0.1.2.0"; - sha256 = "19vxqc9ng2vfvqxslxb950ygdqdd3cbqs4m6nqw8mbyjgld2wqd8"; + version = "0.1.4.0"; + sha256 = "153j8ml8gqgmgzd6aybwcwvrnafgz54myl42l293mj64kcc1yc9r"; libraryHaskellDepends = [ base ]; description = "Hypergeometric functions"; license = lib.licenses.agpl3Only; @@ -157756,6 +157188,8 @@ self: { ]; description = "Typed ASTs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "hyphenate" = callPackage @@ -158154,6 +157588,7 @@ self: { ]; description = "Lattice iCE40 Primitive IP"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "icepeak" = callPackage @@ -158168,8 +157603,8 @@ self: { }: mkDerivation { pname = "icepeak"; - version = "0.7.4.0"; - sha256 = "1jjcjl0i9brdzflfz4b7fba420rwgmv74b1qz7ii6m4bd7i4jkzp"; + version = "1.0.0.0"; + sha256 = "0w8s4kfm97i8pjy6nfi7b0rqd1g83fxpm0lqpwdcxqz443lcwqpa"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -158236,6 +157671,8 @@ self: { libraryHaskellDepends = [ base bytestring ]; description = "String encoding conversion"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "iconv-typed" = callPackage @@ -158253,7 +157690,6 @@ self: { description = "Type safe iconv wrapper"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ide-backend" = callPackage @@ -158647,6 +158083,8 @@ self: { ]; description = "Functional Programming Language with Dependent Types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) gmp;}; "ieee" = callPackage @@ -158775,6 +158213,8 @@ self: { libraryHaskellDepends = [ base binary bytestring ]; description = "Constructing and dissecting IFF files"; license = "GPL"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ifscs" = callPackage @@ -159095,7 +158535,6 @@ self: { ]; description = "Embed R quasiquotes and plots in IHaskell notebooks"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ihaskell-juicypixels" = callPackage @@ -159210,8 +158649,6 @@ self: { ]; description = "JSX-like but for Haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ihs" = callPackage @@ -159301,6 +158738,8 @@ self: { libraryHaskellDepends = [ base bytestring ]; description = "Determine the type of an image by reading the first bytes"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "imagefilters" = callPackage @@ -159802,19 +159241,18 @@ self: { }) {}; "implicit-hie" = callPackage - ({ mkDerivation, attoparsec, base, bytestring, Cabal-syntax - , directory, filepath, filepattern, hspec, hspec-attoparsec, text - , transformers, yaml + ({ mkDerivation, attoparsec, base, directory, filepath, filepattern + , hspec, hspec-attoparsec, text, transformers, yaml }: mkDerivation { pname = "implicit-hie"; - version = "0.1.3.0"; - sha256 = "0s2h09gp1z81fxc9j5vcxvzyvf5nvqyhkw7mwq4sg8jjpm0r4gn3"; + version = "0.1.4.0"; + sha256 = "08ggdlh5j1ya5rjhvcp1k1iyd5bvrgm865qnaxnqz7xvq7b1864k"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - attoparsec base bytestring Cabal-syntax directory filepath - filepattern text transformers yaml + attoparsec base directory filepath filepattern text transformers + yaml ]; executableHaskellDepends = [ attoparsec base directory filepath filepattern text transformers @@ -160030,6 +159468,8 @@ self: { benchmarkHaskellDepends = [ base criterion ]; description = "Mutable containers in Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "in-other-words" = callPackage @@ -160133,6 +159573,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Simple parser combinators for lexical analysis"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "incipit" = callPackage @@ -160141,16 +159583,14 @@ self: { }: mkDerivation { pname = "incipit"; - version = "0.4.0.0"; - sha256 = "0w4wipaq0iscfnv68x5insjbcqcrnfx6r75lkq6v7nxj1y124yqa"; + version = "0.5.0.0"; + sha256 = "137i92xfpchyvnrckb8876cxw514zxf53hbzqyyj6f4mipiq319j"; libraryHaskellDepends = [ base incipit-core polysemy-conc polysemy-log polysemy-resume polysemy-time ]; description = "A Prelude for Polysemy"; license = "BSD-2-Clause-Patent"; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "incipit-base" = callPackage @@ -160662,6 +160102,7 @@ self: { ]; description = "A collection of implementations of IndieWeb algorithms"; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; }) {}; "indigo" = callPackage @@ -160775,6 +160216,105 @@ self: { broken = true; }) {}; + "inferno-core" = callPackage + ({ mkDerivation, base, bimap, bytestring, containers, cryptonite + , exceptions, generic-lens, hspec, hspec-golden-aeson + , inferno-types, inferno-vc, megaparsec, memory, mtl + , parser-combinators, picosat, pretty-simple, prettyprinter + , QuickCheck, recursion-schemes, syb, template-haskell, text, time + }: + mkDerivation { + pname = "inferno-core"; + version = "0.1.0.0"; + sha256 = "06w8fbxvajqgaqvwdfrinfmgb19m3l6kkcgy3gigcg68x3p4ml1y"; + libraryHaskellDepends = [ + base bimap bytestring containers cryptonite exceptions generic-lens + inferno-types megaparsec memory mtl parser-combinators picosat + prettyprinter recursion-schemes syb template-haskell text time + ]; + testHaskellDepends = [ + base containers exceptions hspec hspec-golden-aeson inferno-types + inferno-vc megaparsec mtl pretty-simple prettyprinter QuickCheck + recursion-schemes text + ]; + description = "A statically-typed functional scripting language"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + + "inferno-lsp" = callPackage + ({ mkDerivation, base, bytestring, co-log-core, containers + , inferno-core, inferno-types, inferno-vc, lsp, lsp-types + , megaparsec, microlens, mtl, plow-log, plow-log-async + , prettyprinter, safe, special-keys, stm, text, text-rope, time + , transformers, uuid + }: + mkDerivation { + pname = "inferno-lsp"; + version = "0.1.0"; + sha256 = "12ss0zq9jwvggjlzsyzbdl1afli3h6w2fl3bs9cbg1k42zzj44s4"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring co-log-core containers inferno-core inferno-types + inferno-vc lsp lsp-types megaparsec microlens mtl plow-log + plow-log-async prettyprinter safe special-keys stm text text-rope + time transformers uuid + ]; + executableHaskellDepends = [ base ]; + description = "LSP for Inferno"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "inferno-lsp-server"; + }) {}; + + "inferno-types" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, bifunctors + , bytestring, cereal, containers, cryptonite, deepseq, hashable + , megaparsec, memory, mtl, prettyprinter, QuickCheck + , quickcheck-arbitrary-adt, quickcheck-instances, recursion-schemes + , servant, text + }: + mkDerivation { + pname = "inferno-types"; + version = "0.1.0.0"; + sha256 = "1jbp7kirh7cwgi3q1qzrb3hrrarymb1830q1gbs5xszkn0i08gyb"; + libraryHaskellDepends = [ + aeson base base64-bytestring bifunctors bytestring cereal + containers cryptonite deepseq hashable megaparsec memory mtl + prettyprinter QuickCheck quickcheck-arbitrary-adt + quickcheck-instances recursion-schemes servant text + ]; + description = "Core types for Inferno"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "inferno-vc" = callPackage + ({ mkDerivation, aeson, async, base, base64-bytestring, bytestring + , containers, cryptonite, directory, filepath, generic-lens + , http-client, http-types, inferno-types, lens, mtl, plow-log + , QuickCheck, quickcheck-arbitrary-adt, quickcheck-instances + , servant, servant-client, servant-server, servant-typed-error + , text, time, wai, wai-extra, warp, yaml, zlib + }: + mkDerivation { + pname = "inferno-vc"; + version = "0.1.0"; + sha256 = "1chq43r134hn0hl910y2lyawpllw8yzdai2kzdmbhawac3q640if"; + libraryHaskellDepends = [ + aeson async base base64-bytestring bytestring containers cryptonite + directory filepath generic-lens http-client http-types + inferno-types lens mtl plow-log QuickCheck quickcheck-arbitrary-adt + quickcheck-instances servant servant-client servant-server + servant-typed-error text time wai wai-extra warp yaml zlib + ]; + description = "Version control server for Inferno"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "infernu" = callPackage ({ mkDerivation, base, containers, digits, either, fgl , language-ecmascript, mtl, optparse-applicative, parsec @@ -160796,6 +160336,25 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "infinite-list" = callPackage + ({ mkDerivation, base, QuickCheck, tasty, tasty-bench + , tasty-expected-failure, tasty-inspection-testing + , tasty-quickcheck + }: + mkDerivation { + pname = "infinite-list"; + version = "0.1"; + sha256 = "0imayklahbpsiciflwvwj3fxjhg461lw6x4515wxr39hgpb18di1"; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ + base QuickCheck tasty tasty-expected-failure + tasty-inspection-testing tasty-quickcheck + ]; + benchmarkHaskellDepends = [ base tasty-bench ]; + description = "Infinite lists"; + license = lib.licenses.bsd3; + }) {}; + "infinite-search" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -161013,6 +160572,8 @@ self: { libraryHaskellDepends = [ base inj ]; description = "'Inj' instances for 'base'"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "inject" = callPackage @@ -161062,6 +160623,8 @@ self: { ]; description = "Canonical categorical conversions (injections and projections)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "inline-asm" = callPackage @@ -161087,8 +160650,6 @@ self: { description = "Inline some Assembly in ur Haskell!"; license = lib.licenses.bsd3; platforms = lib.platforms.x86; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "inline-c" = callPackage @@ -161212,8 +160773,6 @@ self: { ]; description = "Seamlessly call R from Haskell and vice versa. No FFI required."; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) R;}; "inliterate" = callPackage @@ -161338,7 +160897,6 @@ self: { ]; description = "A simple proxy for debugging plaintext protocols communication"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "inspection-proxy"; }) {}; @@ -161410,8 +160968,8 @@ self: { }: mkDerivation { pname = "instana-haskell-trace-sdk"; - version = "0.8.0.0"; - sha256 = "008r4164idzd9877crmmyc8yl63ssm8pszr75h7gkz8j9kyibrsp"; + version = "0.9.0.0"; + sha256 = "08w7s8pa2c2qbw3hwxlmgdlibhvnlb9a9z0jy09drfqgv0qfsk3p"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -161668,6 +161226,8 @@ self: { ]; description = "Interval map"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "int-like" = callPackage @@ -161723,8 +161283,6 @@ self: { testHaskellDepends = [ base containers doctest primitive ]; description = "Advent of Code 2019 intcode interpreter"; license = lib.licenses.isc; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "integer-gmp_1_1" = callPackage @@ -161797,6 +161355,23 @@ self: { libraryHaskellDepends = [ ghc-prim ]; description = "Simple Integer library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "integer-types" = callPackage + ({ mkDerivation, base, deepseq, exceptions, hedgehog, hspec }: + mkDerivation { + pname = "integer-types"; + version = "0.0.0.0"; + sha256 = "1hny749vzc9bp0dqhypfanxnjjp6s87nmwm17xzh75742ajcf86z"; + revision = "1"; + editedCabalFile = "0c5xfvy8cspzbakng4rnnhc45n24hjrldf14i8ipp2l94n8mvn8y"; + libraryHaskellDepends = [ base deepseq exceptions hedgehog ]; + testHaskellDepends = [ base deepseq exceptions hedgehog hspec ]; + doHaddock = false; + description = "Integer, Natural, and Positive"; + license = lib.licenses.asl20; }) {}; "integration" = callPackage @@ -161855,7 +161430,6 @@ self: { description = "Hardware accelerated AES encryption and Random Number Generation"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {intel_aes = null;}; "intensional-datatys" = callPackage @@ -161915,7 +161489,9 @@ self: { executableHaskellDepends = [ base ]; description = "Interactive quick time series plotting"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "interactive-plot-demo"; + broken = true; }) {}; "interchangeable" = callPackage @@ -162344,7 +161920,9 @@ self: { testToolDepends = [ hspec-discover ]; description = "An implementation of Allen's interval algebra for temporal logic"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "tutorial"; + broken = true; }) {}; "interval-functor" = callPackage @@ -162361,21 +161939,23 @@ self: { "interval-patterns" = callPackage ({ mkDerivation, base, containers, groups, hspec, lattices - , QuickCheck, relude, semirings, time, time-compat + , QuickCheck, semirings, time, time-compat }: mkDerivation { pname = "interval-patterns"; - version = "0.5.0.0"; - sha256 = "1ayvhjg7a8z7wp1pqsf4wcvxj5y3izsxz3b53q57dsvrlsc9i0kg"; + version = "0.6.0.0"; + sha256 = "0f0gy1442v7di34bngssihhyb6vmhdi71j8yqmii8c7xxvnpr69a"; libraryHaskellDepends = [ - base containers groups lattices relude semirings time time-compat + base containers groups lattices semirings time time-compat ]; testHaskellDepends = [ - base containers groups hspec lattices QuickCheck relude semirings - time time-compat + base containers groups hspec lattices QuickCheck semirings time + time-compat ]; description = "Intervals, and monoids thereof"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "interval-tree-clock" = callPackage @@ -162476,6 +162056,8 @@ self: { ]; description = "Safe and minimal prelude"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "intro-prelude" = callPackage @@ -162492,7 +162074,6 @@ self: { description = "Intro reexported as Prelude"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "introduction" = callPackage @@ -162569,28 +162150,6 @@ self: { }) {}; "invariant" = callPackage - ({ mkDerivation, array, base, bifunctors, comonad, containers - , contravariant, ghc-prim, hspec, hspec-discover, profunctors - , QuickCheck, StateVar, stm, tagged, template-haskell - , th-abstraction, transformers, transformers-compat - , unordered-containers - }: - mkDerivation { - pname = "invariant"; - version = "0.5.6"; - sha256 = "1l73wlnmh09187w8y61qyjjycpljds9lydy16ifa08bmmbxgkzcw"; - libraryHaskellDepends = [ - array base bifunctors comonad containers contravariant ghc-prim - profunctors StateVar stm tagged template-haskell th-abstraction - transformers transformers-compat unordered-containers - ]; - testHaskellDepends = [ base hspec QuickCheck template-haskell ]; - testToolDepends = [ hspec-discover ]; - description = "Haskell98 invariant functors"; - license = lib.licenses.bsd2; - }) {}; - - "invariant_0_6" = callPackage ({ mkDerivation, array, base, bifunctors, comonad, containers , contravariant, ghc-prim, hspec, hspec-discover, profunctors , QuickCheck, StateVar, stm, tagged, template-haskell @@ -162612,7 +162171,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Haskell98 invariant functors"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; }) {}; "inventory" = callPackage @@ -162639,7 +162197,9 @@ self: { ]; description = "Project statistics and definition analysis"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "inventory"; + broken = true; }) {}; "invert" = callPackage @@ -162717,7 +162277,6 @@ self: { description = "invertible functions and instances for HList"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "invertible-hxt" = callPackage @@ -163669,7 +163228,9 @@ self: { executableHaskellDepends = [ base ]; description = "A library for writing IRC bots"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "ircbot-demo"; + broken = true; }) {}; "ircbouncer" = callPackage @@ -163751,7 +163312,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "iridium"; - broken = true; }) {}; "iris" = callPackage @@ -164118,8 +163678,6 @@ self: { ]; description = "Isomorphism typeclass solving the conversion problem"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "isotope" = callPackage @@ -164436,7 +163994,9 @@ self: { executableHaskellDepends = [ base bytestring ]; description = "Enable graphical display of images inline on some terminals"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "it2-show"; + broken = true; }) {}; "iterm-show-JuicyPixels" = callPackage @@ -164450,6 +164010,7 @@ self: { libraryHaskellDepends = [ base iterm-show JuicyPixels ]; description = "Orphan Show instances for JuciyPixels image types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "iterm-show-diagrams" = callPackage @@ -164467,6 +164028,7 @@ self: { ]; description = "Orphan Show instances for diagrams package that render inline in some terminals"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "ival" = callPackage @@ -165034,7 +164596,6 @@ self: { doHaddock = false; description = "Functional, expression-oriented data processing language"; license = lib.licenses.agpl3Only; - hydraPlatforms = lib.platforms.none; mainProgram = "ja"; maintainers = [ lib.maintainers.sternenseemann ]; }) {}; @@ -165046,10 +164607,8 @@ self: { }: mkDerivation { pname = "jack"; - version = "0.7.2"; - sha256 = "0aa7nz8ybsw7s0nmf12kxnjm5z1afj88c97b1w17b7lvdwvfs3cx"; - revision = "1"; - editedCabalFile = "16g5xc67811jvckfn0xfvcwbxi0kcx1qh87pyhrqvrp4k8m68g2v"; + version = "0.7.2.1"; + sha256 = "03cf6yb3nbcwy0429b0r2dxj6dvk295y4w73lyc6fpjh001yp7c9"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -165090,15 +164649,18 @@ self: { }) {}; "jackpolynomials" = callPackage - ({ mkDerivation, array, base, ilist, lens, math-functions - , mpolynomials, numeric-prelude + ({ mkDerivation, array, base, hspray, hypergeomatrix, ilist, lens + , math-functions, numeric-prelude, tasty, tasty-hunit }: mkDerivation { pname = "jackpolynomials"; - version = "1.0.0.0"; - sha256 = "13marv1cl4c5xprwjn7yz3hbwln2cnmxski945saf3azs67ki824"; + version = "1.1.0.1"; + sha256 = "0wss00638zsi9zsphmr7pw19rdcvqfmd6fcc0wwhpkz6mkzm4c9s"; libraryHaskellDepends = [ - array base ilist lens math-functions mpolynomials numeric-prelude + array base hspray ilist lens math-functions numeric-prelude + ]; + testHaskellDepends = [ + base hspray hypergeomatrix tasty tasty-hunit ]; description = "Jack, zonal, and Schur polynomials"; license = lib.licenses.gpl3Only; @@ -165160,6 +164722,7 @@ self: { description = "Jailed IO monad"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "jailbreak-cabal" = callPackage @@ -165174,7 +164737,7 @@ self: { description = "Strip version restrictions from Cabal files"; license = lib.licenses.bsd3; mainProgram = "jailbreak-cabal"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.sternenseemann ]; }) {}; "jalaali" = callPackage @@ -165232,7 +164795,9 @@ self: { executableHaskellDepends = [ base boxes directory filepath ]; description = "Export sheet music and audio from Windows/Mac app Jammit"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "jammittools"; + broken = true; }) {}; "japanese-calendar" = callPackage @@ -165342,7 +164907,9 @@ self: { executableToolDepends = [ alex happy ]; description = "Create immutable algebraic data structures for Java"; license = "unknown"; + hydraPlatforms = lib.platforms.none; mainProgram = "java-adt"; + broken = true; }) {}; "java-bridge" = callPackage @@ -165367,7 +164934,6 @@ self: { description = "Bindings to the JNI and a high level interface generator"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "java-bridge-extras" = callPackage @@ -165824,7 +165390,6 @@ self: { ]; description = "QuasiQuotation library for programmatic generation of Javascript code"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "jmacro"; }) {}; @@ -165845,6 +165410,7 @@ self: { description = "JSON-RPC clients and servers using JMacro, and evented client-server Reactive Programming"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "jmacro-rpc-happstack" = callPackage @@ -165912,7 +165478,6 @@ self: { testHaskellDepends = [ base casing free jmacro ]; description = "Jmonkey is very restricted but handy EDSL for JavaScript"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "jni" = callPackage @@ -166040,8 +165605,6 @@ self: { ]; description = "Trying to compose non-composable"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "jonathanscard" = callPackage @@ -166293,6 +165856,8 @@ self: { pname = "jose-jwt"; version = "0.9.4"; sha256 = "1drdlxbhbac3b6ph2l969vvicmg1yww9yhz3pd9maq7pdajbpjcc"; + revision = "1"; + editedCabalFile = "1xhkdmfsl2wwkjk384gy6bwp2bhncdjgqvncdnzpx9b801v67f3c"; libraryHaskellDepends = [ aeson attoparsec base bytestring cereal containers cryptonite memory mtl text time transformers transformers-compat @@ -166323,6 +165888,7 @@ self: { ]; description = "Tiny markdown notebook"; license = lib.licenses.isc; + hydraPlatforms = lib.platforms.none; mainProgram = "jot"; }) {}; @@ -166339,6 +165905,8 @@ self: { testHaskellDepends = [ base hspec ]; description = "Transform Joy code using conditional rewrite rules"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "jpeg" = callPackage @@ -166484,6 +166052,8 @@ self: { ]; description = "Interface for JavaScript that works with GHCJS and GHC"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "jsaddle-dom" = callPackage @@ -166520,6 +166090,7 @@ self: { description = "JSaddle Hello World, an example package"; license = lib.licenses.mit; badPlatforms = lib.platforms.darwin; + hydraPlatforms = lib.platforms.none; }) {}; "jsaddle-warp" = callPackage @@ -166546,6 +166117,8 @@ self: { ]; description = "Interface for JavaScript that works with GHCJS and GHC"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "jsaddle-webkit2gtk" = callPackage @@ -166866,6 +166439,8 @@ self: { benchmarkHaskellDepends = [ aeson criterion rebase ]; description = "Direct-to-bytes JSON Builder"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "json-directory" = callPackage @@ -167647,8 +167222,8 @@ self: { }: mkDerivation { pname = "jsonifier"; - version = "0.2.1.1"; - sha256 = "0wih0m3g2wj06zwl2wbs9y2bfbc593vmh25imy6hki2iq7wwr3l0"; + version = "0.2.1.2"; + sha256 = "0swv5xmns2qqkmb8wc0f9gsbrs81ghfp8jvq0lr7fgam3cbzaibr"; libraryHaskellDepends = [ base bytestring ptr-poker scientific text ]; @@ -167697,8 +167272,6 @@ self: { ]; description = "JsonLogic Evaluation"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "jsonlogic-aeson" = callPackage @@ -167720,6 +167293,7 @@ self: { description = "JsonLogic Aeson Support"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "jsonnet" = callPackage @@ -167762,27 +167336,6 @@ self: { }) {}; "jsonpath" = callPackage - ({ mkDerivation, aeson, aeson-casing, attoparsec, base, bytestring - , file-embed, hspec, hspec-attoparsec, hspec-discover, text - , unordered-containers, vector - }: - mkDerivation { - pname = "jsonpath"; - version = "0.2.1.0"; - sha256 = "1d9h6j0xzrpxc56wym9b0sdanpw1v2rcx1sdm49h6iriwwmckb10"; - libraryHaskellDepends = [ - aeson attoparsec base text unordered-containers vector - ]; - testHaskellDepends = [ - aeson aeson-casing attoparsec base bytestring file-embed hspec - hspec-attoparsec text unordered-containers vector - ]; - testToolDepends = [ hspec-discover ]; - description = "Library to parse and execute JSONPath"; - license = lib.licenses.bsd3; - }) {}; - - "jsonpath_0_3_0_0" = callPackage ({ mkDerivation, aeson, aeson-casing, base, bytestring, file-embed , hspec, hspec-discover, hspec-megaparsec, megaparsec, scientific , text, unordered-containers, vector @@ -167801,7 +167354,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Library to parse and execute JSONPath"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "jsonresume" = callPackage @@ -168120,8 +167672,8 @@ self: { }: mkDerivation { pname = "juicy-gcode"; - version = "0.2.0.2"; - sha256 = "1kr59d21825mrfr9370f4z717gf45rcdp8jw7xw3d4mp7ba6r66b"; + version = "0.3.0.0"; + sha256 = "0j2q76fwx93az2yk0pnmzl82npl0305ks2ia7gbxi7k9jwdzbp0i"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -168456,7 +168008,6 @@ self: { description = "Low-level Haskell client library for Apache Kafka 0.7."; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "kafka-client-sync" = callPackage @@ -169099,8 +168650,8 @@ self: { }: mkDerivation { pname = "katip-wai"; - version = "0.1.2.0"; - sha256 = "10chkrjjh6ja6bil3s12hm7mfgi1j1idq490h5iqs1y3am44bda1"; + version = "0.1.2.1"; + sha256 = "1shzmjpz043fglvn4niydbjf3a41bmx2dhyp7ch5g256irqs4a21"; libraryHaskellDepends = [ aeson base bytestring clock http-types katip network text uuid wai ]; @@ -169431,6 +168982,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "keenser-exe"; + broken = true; }) {}; "keep-alive" = callPackage @@ -169470,7 +169022,6 @@ self: { ]; description = "Rapid Gtk Application Development - I18N"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "keera-hails-mvc-controller" = callPackage @@ -169812,8 +169363,8 @@ self: { }: mkDerivation { pname = "keid-core"; - version = "0.1.7.1"; - sha256 = "0izq63b4ii7gc36qs26y87rr19y4sh1l4cw26bqwdyvdndmmsq90"; + version = "0.1.7.2"; + sha256 = "06abgzc7h6h0xsgrv3b1n2krb2axb7svg00l0rz5k2qs3bz26kfd"; libraryHaskellDepends = [ base binary bytestring containers cryptohash-md5 derive-storable derive-storable-plugin file-embed foldl geomancy GLFW-b ktx-codec @@ -170017,7 +169568,6 @@ self: { description = "Manage and abstract your packer configurations"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "kesha" = callPackage @@ -170214,6 +169764,79 @@ self: { broken = true; }) {}; + "keyed-vals" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, http-api-data + , redis-glob, text + }: + mkDerivation { + pname = "keyed-vals"; + version = "0.2.0.0"; + sha256 = "0im4wn7m5y6kmi8cjxfn72316zldg9v92fbw6hlimc7hkndb34mf"; + libraryHaskellDepends = [ + aeson base bytestring containers http-api-data redis-glob text + ]; + description = "An abstract Handle for accessing collections in stores like Redis"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "keyed-vals-hspec-tests" = callPackage + ({ mkDerivation, aeson, base, benri-hspec, bytestring, containers + , hspec, http-api-data, keyed-vals, text + }: + mkDerivation { + pname = "keyed-vals-hspec-tests"; + version = "0.2.0.0"; + sha256 = "1pmhd9gjq92gn5z36l6av3hbxq5ynwhzy3igij7wvndx3mkj94hm"; + libraryHaskellDepends = [ + aeson base benri-hspec bytestring containers hspec http-api-data + keyed-vals text + ]; + description = "Validate a keyed-vals Handle"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + + "keyed-vals-mem" = callPackage + ({ mkDerivation, base, bytestring, containers, hspec, keyed-vals + , keyed-vals-hspec-tests, text, unliftio, unliftio-core + }: + mkDerivation { + pname = "keyed-vals-mem"; + version = "0.2.0.0"; + sha256 = "08zsrwdcqw7ic1l9ygcalyg0k985ck1gal03kw21jlsh3l77942d"; + libraryHaskellDepends = [ + base bytestring containers keyed-vals text unliftio unliftio-core + ]; + testHaskellDepends = [ base hspec keyed-vals-hspec-tests ]; + description = "Implements a keyed-vals Handle using in-process memory"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + + "keyed-vals-redis" = callPackage + ({ mkDerivation, base, bytestring, containers, hedis, hspec + , hspec-tmp-proc, keyed-vals, keyed-vals-hspec-tests, QuickCheck + , read-env-var, text, tmp-proc-redis, unliftio, unliftio-core + }: + mkDerivation { + pname = "keyed-vals-redis"; + version = "0.2.0.0"; + sha256 = "1fxb1r6c19sslhmml04w7adpqwq1glavm5mfix7iiaxly358jdy6"; + libraryHaskellDepends = [ + base bytestring containers hedis keyed-vals read-env-var text + unliftio unliftio-core + ]; + testHaskellDepends = [ + base bytestring hspec hspec-tmp-proc keyed-vals-hspec-tests + QuickCheck text tmp-proc-redis + ]; + description = "Access Redis using a keyed-vals Handle"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "keylayouts" = callPackage ({ mkDerivation, base, bytestring, containers, text, xeno }: mkDerivation { @@ -170320,8 +169943,6 @@ self: { ]; description = "Managing stores of secret things"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "keyvaluehash" = callPackage @@ -170387,20 +170008,6 @@ self: { }) {}; "ki" = callPackage - ({ mkDerivation, base, containers, stm }: - mkDerivation { - pname = "ki"; - version = "0.2.0.1"; - sha256 = "1nxmgv4kxh2whdsmj659iypf8gfjrqzyxzyzghapg1fmpffjpcyr"; - revision = "1"; - editedCabalFile = "0prk6bq1rw52dc7ydapqklcapl1z6yqz0vnx0fl4cm600pd9salm"; - libraryHaskellDepends = [ base containers stm ]; - testHaskellDepends = [ base stm ]; - description = "A lightweight, structured-concurrency library"; - license = lib.licenses.bsd3; - }) {}; - - "ki_1_0_0_1" = callPackage ({ mkDerivation, base, containers, stm, tasty, tasty-hunit }: mkDerivation { pname = "ki"; @@ -170410,7 +170017,6 @@ self: { testHaskellDepends = [ base stm tasty tasty-hunit ]; description = "A lightweight structured concurrency library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "ki-unlifted" = callPackage @@ -170422,8 +170028,6 @@ self: { libraryHaskellDepends = [ base ki unliftio-core ]; description = "A lightweight structured-concurrency library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "kibro" = callPackage @@ -170697,7 +170301,9 @@ self: { ]; description = "K_M,N quadratic programming"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "kmn-programming"; + broken = true; }) {}; "kmonad" = callPackage @@ -171129,39 +170735,6 @@ self: { }) {}; "krank" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, hspec - , hspec-expectations, http-client, http-types, lifted-async, mtl - , optparse-applicative, pcre-heavy, pretty-terminal, process, PyF - , req, safe-exceptions, text, unordered-containers - }: - mkDerivation { - pname = "krank"; - version = "0.2.3"; - sha256 = "0y78njv85s7mcza541gdax5l9651vm78k78ay42phcfvniv82hgx"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base bytestring containers http-client http-types - lifted-async mtl pcre-heavy pretty-terminal PyF req safe-exceptions - text unordered-containers - ]; - executableHaskellDepends = [ - base containers mtl optparse-applicative pcre-heavy pretty-terminal - process PyF text - ]; - testHaskellDepends = [ - aeson base bytestring containers hspec hspec-expectations - http-client http-types lifted-async mtl pcre-heavy pretty-terminal - PyF req safe-exceptions text unordered-containers - ]; - description = "Krank checks issue tracker link status in your source code"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - mainProgram = "krank"; - broken = true; - }) {}; - - "krank_0_3_0" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, hspec , hspec-expectations, http-client, http-types, lifted-async, mtl , optparse-applicative, pcre-heavy, pretty-terminal, process, PyF @@ -171189,9 +170762,7 @@ self: { ]; description = "Krank checks issue tracker link status in your source code"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "krank"; - broken = true; }) {}; "krapsh" = callPackage @@ -171489,7 +171060,6 @@ self: { ]; description = "Key/Value Indexed Table container and formatting library"; license = lib.licenses.isc; - hydraPlatforms = lib.platforms.none; }) {}; "kyotocabinet" = callPackage @@ -172012,8 +171582,10 @@ self: { }: mkDerivation { pname = "lambdabot"; - version = "5.3.0.2"; - sha256 = "0c5qwgzisvqxlyh378bbnabb9lbinknwvcf46sjpm6355krcw3g7"; + version = "5.3.1"; + sha256 = "0fznnbjrk5m6g0jd65ngmckqcgnn87hs30mxqfkncqbqp86s3zyd"; + revision = "2"; + editedCabalFile = "0q7sb9man3zxgaajm8vy59ld0xsb5vzjai8vb8rnljxdkgsy4i5j"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -172033,23 +171605,23 @@ self: { , dependent-map, dependent-sum, dependent-sum-template, directory , edit-distance, exceptions, filepath, haskeline, hslogger, HTTP , lifted-base, monad-control, mtl, network, network-bsd, parsec - , prim-uniq, random, random-fu, random-source, regex-tdfa - , SafeSemaphore, split, syb, template-haskell, time, transformers - , transformers-base, unix, utf8-string, zlib + , prim-uniq, random, random-fu, regex-tdfa, SafeSemaphore, split + , syb, template-haskell, time, transformers, transformers-base + , unix, utf8-string, zlib }: mkDerivation { pname = "lambdabot-core"; - version = "5.3.0.2"; - sha256 = "1i375kiw98j5gd4pixh59lcqk0lakwmrgxzpkr0431a48kxffq7r"; - revision = "1"; - editedCabalFile = "1kydr2sis2r7vr313n6cy5rh2bpnci7zfmrbmxd6ih67f0x8aa3q"; + version = "5.3.1"; + sha256 = "1hiq1wh60cprx49y1178rwsw8dcflzx10g2ivi77d4qxyiawljph"; + revision = "2"; + editedCabalFile = "0cp2aldnqxd74l4ggxm523shfyvh864zvp6v0d0zyry5jrx7zyfr"; libraryHaskellDepends = [ base binary bytestring containers dependent-map dependent-sum dependent-sum-template directory edit-distance exceptions filepath haskeline hslogger HTTP lifted-base monad-control mtl network - network-bsd parsec prim-uniq random random-fu random-source - regex-tdfa SafeSemaphore split syb template-haskell time - transformers transformers-base unix utf8-string zlib + network-bsd parsec prim-uniq random random-fu regex-tdfa + SafeSemaphore split syb template-haskell time transformers + transformers-base unix utf8-string zlib ]; description = "Lambdabot core functionality"; license = "GPL"; @@ -172060,21 +171632,23 @@ self: { , data-memocombinators, directory, filepath , haskell-src-exts-simple, hoogle, HTTP, IOSpec, lambdabot-core , lambdabot-reference-plugins, lambdabot-trusted, lifted-base - , logict, MonadRandom, mtl, mueval, network, numbers, oeis, parsec - , pretty, process, QuickCheck, regex-tdfa, show, split, syb - , transformers, utf8-string, vector-space + , logict, mtl, mueval, network, numbers, oeis, parsec, pretty + , process, QuickCheck, regex-tdfa, show, split, syb, transformers + , utf8-string, vector-space }: mkDerivation { pname = "lambdabot-haskell-plugins"; - version = "5.3.0.2"; - sha256 = "1h2f86dw3356n66n1nfcqi5hsnj6kvlc1px8s4nrw3zvjlkangzq"; + version = "5.3.1"; + sha256 = "05xja5xamvl61xc09fyijmv0sylfd3aaii3p410xa34msglsyssd"; + revision = "2"; + editedCabalFile = "15filg6s0xhizffmhx7ca220930d2xjqvmfaafcrl7vpn3dcrgbl"; libraryHaskellDepends = [ array arrows base bytestring containers data-memocombinators directory filepath haskell-src-exts-simple hoogle HTTP IOSpec lambdabot-core lambdabot-reference-plugins lambdabot-trusted - lifted-base logict MonadRandom mtl mueval network numbers oeis - parsec pretty process QuickCheck regex-tdfa show split syb - transformers utf8-string vector-space + lifted-base logict mtl mueval network numbers oeis parsec pretty + process QuickCheck regex-tdfa show split syb transformers + utf8-string vector-space ]; description = "Lambdabot Haskell plugins"; license = "GPL"; @@ -172087,8 +171661,10 @@ self: { }: mkDerivation { pname = "lambdabot-irc-plugins"; - version = "5.3.0.2"; - sha256 = "1pwl77dh474sqvhd4nfqcqvzicz36xww13sw49qs5wd2fkp50zqi"; + version = "5.3.1"; + sha256 = "0fcbp39vm05g6sjjmxmdxflia5n0yckai0chqqkk1g01khb4pkjy"; + revision = "2"; + editedCabalFile = "17kg3vac8jiciwygzxdws3bskiwlxfm41hbqn8wm0hcz0l9h4ss0"; libraryHaskellDepends = [ base bytestring containers directory filepath lambdabot-core lifted-base mtl network SafeSemaphore split time @@ -172100,19 +171676,21 @@ self: { "lambdabot-misc-plugins" = callPackage ({ mkDerivation, base, bytestring, containers, filepath , lambdabot-core, lifted-base, mtl, network, network-uri, parsec - , process, random, random-fu, random-source, regex-tdfa - , SafeSemaphore, split, tagsoup, template-haskell, time - , transformers, transformers-base, unix, utf8-string, zlib + , process, regex-tdfa, SafeSemaphore, split, tagsoup + , template-haskell, time, transformers, transformers-base, unix + , utf8-string, zlib }: mkDerivation { pname = "lambdabot-misc-plugins"; - version = "5.3.0.2"; - sha256 = "0m2rarvcmmas78ghzvzjf1flicj2sf4d14i7y5cxfpc5l3zcyqwq"; + version = "5.3.1"; + sha256 = "01dq0lxr7cbnh6bzlk5cndqif44q1sw2azqimz43gaplpqbnavl6"; + revision = "2"; + editedCabalFile = "188l0yj672dbdssfafnlz4jybyd1d1i7yb3j66v483b5m09m0f2x"; libraryHaskellDepends = [ base bytestring containers filepath lambdabot-core lifted-base mtl - network network-uri parsec process random random-fu random-source - regex-tdfa SafeSemaphore split tagsoup template-haskell time - transformers transformers-base unix utf8-string zlib + network network-uri parsec process regex-tdfa SafeSemaphore split + tagsoup template-haskell time transformers transformers-base unix + utf8-string zlib ]; description = "Lambdabot miscellaneous plugins"; license = "GPL"; @@ -172120,16 +171698,19 @@ self: { "lambdabot-novelty-plugins" = callPackage ({ mkDerivation, base, binary, brainfuck, bytestring, containers - , dice, directory, lambdabot-core, misfortune, process, random-fu - , regex-tdfa, unlambda + , dice, directory, lambdabot-core, misfortune, process, random + , random-fu, regex-tdfa, unlambda }: mkDerivation { pname = "lambdabot-novelty-plugins"; - version = "5.3.0.2"; - sha256 = "09rqshkh1k7536b9zw4rga370l35v47vf28xdlnrh7knwh88yr70"; + version = "5.3.1"; + sha256 = "0v851nxpxr90agfyh9nx44f1r310fs93y2gji4a7x1synb786rnw"; + revision = "2"; + editedCabalFile = "1m500jq122wml8cp398szd7m9bya4fw5yg2fcv349fdz32wr18hd"; libraryHaskellDepends = [ base binary brainfuck bytestring containers dice directory - lambdabot-core misfortune process random-fu regex-tdfa unlambda + lambdabot-core misfortune process random random-fu regex-tdfa + unlambda ]; description = "Novelty plugins for Lambdabot"; license = "GPL"; @@ -172142,8 +171723,10 @@ self: { }: mkDerivation { pname = "lambdabot-reference-plugins"; - version = "5.3.0.2"; - sha256 = "1n9r29gmllmad2nr83gnbafka7gp99qji1pj0hhcr7gb31asz2xl"; + version = "5.3.1"; + sha256 = "16zp4mpp77778i8vkcr58nr3xg2rnfdlm5ap0sdrqqfx51bs8ybq"; + revision = "2"; + editedCabalFile = "1c65bw5q7gap9n1rlxv0y988fd7srzkdzz0m2x6b70kfkj19ha7m"; libraryHaskellDepends = [ base bytestring containers HTTP lambdabot-core mtl network network-uri oeis process regex-tdfa split tagsoup utf8-string @@ -172158,8 +171741,10 @@ self: { }: mkDerivation { pname = "lambdabot-social-plugins"; - version = "5.3.0.2"; - sha256 = "10yl1z562cnnx0ml343c7psaw5zsil66zrbsgvij6cy2b2p2d3m2"; + version = "5.3.1"; + sha256 = "0d8hc34hky8br53yj15qchbkm796d7x9zhhm8bq9h4rn1a2zfmdz"; + revision = "2"; + editedCabalFile = "1gk4qmjzizxk4qzc3kvq36p515my2cf6vybhnb2zaxpnckg9v68k"; libraryHaskellDepends = [ base binary bytestring containers lambdabot-core mtl split time ]; @@ -172191,17 +171776,15 @@ self: { ]; description = "Lambdabot for Telegram"; license = lib.licenses.gpl2Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "telegram-lambdabot"; - broken = true; }) {}; "lambdabot-trusted" = callPackage ({ mkDerivation, base, oeis, QuickCheck, QuickCheck-safe }: mkDerivation { pname = "lambdabot-trusted"; - version = "5.3.0.2"; - sha256 = "1mwgamd75llraiafk7s43j6qz495j96s1dprckrisww37gv3nn8d"; + version = "5.3.1"; + sha256 = "03wmk7l7krb51zql2qxf805ww0gndbgysfw0fgm3pzd98j7bfimh"; libraryHaskellDepends = [ base oeis QuickCheck QuickCheck-safe ]; description = "Lambdabot trusted code"; license = "GPL"; @@ -172569,6 +172152,7 @@ self: { description = "Lambdabot running as a twitter bot. Similar to the @fsibot f# bot."; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lambdaya-bus" = callPackage @@ -172692,7 +172276,6 @@ self: { description = "Haskell bindings for the Linux Landlock API"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lang" = callPackage @@ -172821,7 +172404,6 @@ self: { ]; description = "Language definition and parser for AVRO files"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "language-bash" = callPackage @@ -173098,28 +172680,6 @@ self: { mainProgram = "emd"; }) {}; - "language-docker" = callPackage - ({ mkDerivation, base, bytestring, containers, data-default-class - , hspec, hspec-megaparsec, HUnit, megaparsec, prettyprinter - , QuickCheck, split, text, time - }: - mkDerivation { - pname = "language-docker"; - version = "10.4.3"; - sha256 = "0s3grrz3n0fvxh7qn4gfaw1m194zd2s4zjqhzar8kr783yw3rr1k"; - libraryHaskellDepends = [ - base bytestring containers data-default-class megaparsec - prettyprinter split text time - ]; - testHaskellDepends = [ - base bytestring containers data-default-class hspec - hspec-megaparsec HUnit megaparsec prettyprinter QuickCheck split - text time - ]; - description = "Dockerfile parser, pretty-printer and embedded DSL"; - license = lib.licenses.gpl3Only; - }) {}; - "language-docker_11_0_0" = callPackage ({ mkDerivation, base, bytestring, containers, data-default , data-default-class, hspec, hspec-megaparsec, HUnit, megaparsec @@ -173143,7 +172703,7 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "language-docker_12_0_0" = callPackage + "language-docker" = callPackage ({ mkDerivation, base, bytestring, containers, data-default , data-default-class, hspec, hspec-megaparsec, HUnit, megaparsec , prettyprinter, QuickCheck, split, text, time @@ -173163,7 +172723,6 @@ self: { ]; description = "Dockerfile parser, pretty-printer and embedded DSL"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; }) {}; "language-dockerfile" = callPackage @@ -173235,8 +172794,6 @@ self: { ]; description = "JavaScript parser and pretty-printer library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "language-ecmascript-analysis" = callPackage @@ -173252,7 +172809,6 @@ self: { ]; description = "JavaScript static analysis library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "language-eiffel" = callPackage @@ -173304,6 +172860,8 @@ self: { libraryToolDepends = [ alex happy ]; description = "Fortran lexer and parser, language support, and extensions"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "language-gcl" = callPackage @@ -173513,6 +173071,8 @@ self: { testHaskellDepends = [ base hspec parsec ]; description = "javascript parser for es6 and es7"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "language-kort" = callPackage @@ -173679,7 +173239,7 @@ self: { ]; description = "Data types and functions to represent the Nix language"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ lib.maintainers.sternenseemann ]; }) {}; "language-oberon" = callPackage @@ -174169,6 +173729,8 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq QuickCheck ]; description = "Matrix programming library"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lapack" = callPackage @@ -174199,6 +173761,7 @@ self: { ]; description = "Numerical Linear Algebra using LAPACK"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "lapack-carray" = callPackage @@ -174231,6 +173794,7 @@ self: { ]; description = "Auto-generated interface to Fortran LAPACK via comfort-array"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "lapack-ffi" = callPackage @@ -174255,6 +173819,8 @@ self: { pname = "lapack-ffi-tools"; version = "0.1.3"; sha256 = "0qk5a43w8xn8pp9bhmjmjyvriiin2dyf4nvk13w858hsxyx6xqkx"; + revision = "1"; + editedCabalFile = "15w2ml6iqwk7776dl9m7lg0jp7akw9f8s95flrsjfxr479qig48i"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -174281,6 +173847,7 @@ self: { ]; description = "Conversion of objects between 'lapack' and 'hmatrix'"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "large-anon" = callPackage @@ -174648,8 +174215,8 @@ self: { }) {}; "lattices" = callPackage - ({ mkDerivation, base, base-compat, containers, deepseq, ghc-prim - , hashable, integer-logarithms, QuickCheck, quickcheck-instances + ({ mkDerivation, base, base-compat, containers, deepseq, hashable + , integer-logarithms, QuickCheck, quickcheck-instances , semigroupoids, tagged, tasty, tasty-quickcheck, transformers , universe-base, universe-reverse-instances, unordered-containers }: @@ -174660,9 +174227,9 @@ self: { revision = "4"; editedCabalFile = "0nkcdqb3gsp1lqpj7hv4knndj7p258j0cp4cbqx7jixc93gkq044"; libraryHaskellDepends = [ - base base-compat containers deepseq ghc-prim hashable - integer-logarithms QuickCheck semigroupoids tagged transformers - universe-base universe-reverse-instances unordered-containers + base base-compat containers deepseq hashable integer-logarithms + QuickCheck semigroupoids tagged transformers universe-base + universe-reverse-instances unordered-containers ]; testHaskellDepends = [ base base-compat containers QuickCheck quickcheck-instances tasty @@ -174701,6 +174268,8 @@ self: { ]; description = "Server-side SDK for integrating with LaunchDarkly"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "launchpad-control" = callPackage @@ -174952,8 +174521,6 @@ self: { testHaskellDepends = [ base doctest exceptions tasty tasty-hunit ]; description = "A bracket with lazy resource allocation"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lazy-csv" = callPackage @@ -175215,7 +174782,6 @@ self: { description = "Online Latent Dirichlet Allocation"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ldap-client" = callPackage @@ -175539,6 +175105,7 @@ self: { ]; description = "Haskell code for learning physics"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "learn-physics-examples" = callPackage @@ -175557,7 +175124,6 @@ self: { description = "examples for learn-physics"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "learning-hmm" = callPackage @@ -175574,7 +175140,6 @@ self: { description = "Yet another library for hidden Markov models"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "leb128" = callPackage @@ -175862,10 +175427,10 @@ self: { }: mkDerivation { pname = "lens"; - version = "5.0.1"; - sha256 = "0gzwx4b758phm51hz5i4bbkbvjw1ka7qj04zd9l9sh9n6s9ksm7c"; - revision = "3"; - editedCabalFile = "17qmk274b88k4ivhnkc6600djhh9d7pr4s1xhzi3ln2cspj5gvb3"; + version = "5.1.1"; + sha256 = "08mkm2mjvhmwg9hc4kd4cd6dgmcszs1p2mzp1nmri7lqbpy9jknc"; + revision = "1"; + editedCabalFile = "19z3k7ikpfa96b86yabxghfqpnq9d0ayy4gdlvci3ycvws0s8cy6"; libraryHaskellDepends = [ array assoc base base-orphans bifunctors bytestring call-stack comonad containers contravariant distributive exceptions filepath @@ -175957,7 +175522,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "lens-aeson" = callPackage + "lens-aeson_1_1_3" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, lens , scientific, text, unordered-containers, vector }: @@ -175973,9 +175538,10 @@ self: { ]; description = "Law-abiding lenses for aeson"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; - "lens-aeson_1_2_2" = callPackage + "lens-aeson" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, lens , scientific, text, text-short, unordered-containers, vector }: @@ -175989,7 +175555,6 @@ self: { ]; description = "Law-abiding lenses for aeson"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "lens-core" = callPackage @@ -176266,6 +175831,8 @@ self: { libraryHaskellDepends = [ base lens tell ]; description = "MonadTell-based lens combinators"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lens-text-encoding" = callPackage @@ -176374,6 +175941,17 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "lens-witherable" = callPackage + ({ mkDerivation, base, witherable }: + mkDerivation { + pname = "lens-witherable"; + version = "0.1.0.2"; + sha256 = "0n00njfd9zcfgrkwajm1h1mvzgblykzn89whca2xwwqspf7f57kd"; + libraryHaskellDepends = [ base witherable ]; + description = "lens-compatible tools for working with witherable"; + license = lib.licenses.mit; + }) {}; + "lens-xml" = callPackage ({ mkDerivation, base, lens, xml }: mkDerivation { @@ -176421,16 +175999,14 @@ self: { "lentil" = callPackage ({ mkDerivation, ansi-wl-pprint, base, csv, deepseq, directory - , dlist, filemanip, filepath, hspec, megaparsec, mtl, natural-sort - , optparse-applicative, regex-tdfa, semigroups + , dlist, filemanip, filepath, hspec, hspec-discover, megaparsec + , mtl, natural-sort, optparse-applicative, regex-tdfa, semigroups , terminal-progress-bar, text }: mkDerivation { pname = "lentil"; - version = "1.5.4.0"; - sha256 = "0xfsf7g9r2w30qkp4829w77hsja562jvx4n9i880j9qngi2ms2h1"; - revision = "2"; - editedCabalFile = "1n88rdsf5ayprgz1wnbx32gaff8kpixfkdkr6q4jvc896fhrhdzp"; + version = "1.5.4.2"; + sha256 = "198ajay44aapyn8zw3416lhv7wdkb8p6y3a77w2m3p9ly9sj5hgc"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -176443,6 +176019,7 @@ self: { hspec megaparsec mtl natural-sort optparse-applicative regex-tdfa semigroups terminal-progress-bar text ]; + testToolDepends = [ hspec-discover ]; description = "frugal issue tracker"; license = lib.licenses.gpl3Only; mainProgram = "lentil"; @@ -176464,7 +176041,6 @@ self: { ]; description = "Van Laarhoven lenses"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "lenz-mtl" = callPackage @@ -176482,7 +176058,6 @@ self: { ]; description = "mtl operations with Van Laarhoven lenses"; license = "unknown"; - hydraPlatforms = lib.platforms.none; }) {}; "lenz-template" = callPackage @@ -176501,6 +176076,7 @@ self: { description = "Van Laarhoven lens templates"; license = "unknown"; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "less-arbitrary" = callPackage @@ -176992,19 +176568,6 @@ self: { }) {inherit (pkgs) expect; inherit (pkgs) tcl;}; "libffi" = callPackage - ({ mkDerivation, base, bytestring, ffi, libffi }: - mkDerivation { - pname = "libffi"; - version = "0.1"; - sha256 = "0g7jnhng3j7z5517aaqga0144aamibsbpgm3yynwyfzkq1kp0f28"; - libraryHaskellDepends = [ base bytestring ]; - librarySystemDepends = [ ffi ]; - libraryPkgconfigDepends = [ libffi ]; - description = "A binding to libffi"; - license = lib.licenses.bsd3; - }) {ffi = null; inherit (pkgs) libffi;}; - - "libffi_0_2_1" = callPackage ({ mkDerivation, base, bytestring }: mkDerivation { pname = "libffi"; @@ -177013,7 +176576,6 @@ self: { libraryHaskellDepends = [ base bytestring ]; description = "A binding to libffi"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "libffi-dynamic" = callPackage @@ -177496,7 +177058,6 @@ self: { description = "Wrapper for libpafe"; license = lib.licenses.gpl2Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {pafe = null;}; "libpq" = callPackage @@ -177601,9 +177162,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Move/rename according a set of rules"; license = lib.licenses.isc; - hydraPlatforms = lib.platforms.none; mainProgram = "librarian"; - broken = true; }) {}; "librato" = callPackage @@ -177704,8 +177263,6 @@ self: { ]; description = "Bindings for secp256k1"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) secp256k1;}; "libsodium" = callPackage @@ -177820,8 +177377,6 @@ self: { description = "Haskell bindings to libsystemd-journal"; license = lib.licenses.bsd3; badPlatforms = lib.platforms.darwin; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) systemd;}; "libtagc" = callPackage @@ -178171,8 +177726,8 @@ self: { ({ mkDerivation, base, template-haskell }: mkDerivation { pname = "lift-type"; - version = "0.1.0.1"; - sha256 = "1195iyf0s8zmibjmvd10bszyccp1a2g4wdysn7yk10d3j0q9xdxf"; + version = "0.1.1.1"; + sha256 = "039psym2ghkydk4qyycs3cxndrf85ab5hwzrqv0ajxcilqr11n0h"; libraryHaskellDepends = [ base template-haskell ]; testHaskellDepends = [ base template-haskell ]; description = "Lift a type from a Typeable constraint to a Template Haskell type"; @@ -178331,8 +177886,6 @@ self: { ]; description = "LIFX LAN API"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ligature" = callPackage @@ -178656,8 +178209,8 @@ self: { ({ mkDerivation, base, hspec, QuickCheck }: mkDerivation { pname = "line-drawing"; - version = "0.4.0.0"; - sha256 = "0f0dj3hr1b9vryrmd88ghhn0jrv3nn5yhl5kj1bwwl99z59ww7bp"; + version = "0.4.0.1"; + sha256 = "19jyfp5cm5yzsvrjxk0yd5j46j6jk56v94xi7na97ghxqbvaascl"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base hspec QuickCheck ]; description = "raster line drawing"; @@ -178722,6 +178275,33 @@ self: { license = lib.licenses.bsd3; }) {}; + "linear_1_22" = callPackage + ({ mkDerivation, adjunctions, base, base-orphans, binary, bytes + , bytestring, cereal, containers, deepseq, distributive, ghc-prim + , hashable, HUnit, indexed-traversable, lens, random, reflection + , semigroupoids, simple-reflect, tagged, template-haskell + , test-framework, test-framework-hunit, transformers + , transformers-compat, unordered-containers, vector, void + }: + mkDerivation { + pname = "linear"; + version = "1.22"; + sha256 = "1ddr0c54kbi9bw7d62i6h3jiss3q0qmrdpkvckajz6qf5lwkxr6g"; + libraryHaskellDepends = [ + adjunctions base base-orphans binary bytes cereal containers + deepseq distributive ghc-prim hashable indexed-traversable lens + random reflection semigroupoids tagged template-haskell + transformers transformers-compat unordered-containers vector void + ]; + testHaskellDepends = [ + base binary bytestring deepseq HUnit reflection simple-reflect + test-framework test-framework-hunit vector + ]; + description = "Linear Algebra"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "linear-accelerate" = callPackage ({ mkDerivation, accelerate, base, Cabal, cabal-doctest , distributive, doctest, lens, linear @@ -178764,32 +178344,6 @@ self: { }) {}; "linear-base" = callPackage - ({ mkDerivation, base, containers, deepseq, gauge, ghc-prim - , hashable, hashtables, hedgehog, mmorph, primitive, random - , random-shuffle, storable-tuple, tasty, tasty-hedgehog, text - , transformers, unordered-containers, vector - }: - mkDerivation { - pname = "linear-base"; - version = "0.1.0"; - sha256 = "00n7rmvkjg42n1pba1y1lziw9a8gyhix15rw13qsyymi8bdr8k82"; - libraryHaskellDepends = [ - base containers ghc-prim hashable primitive storable-tuple text - transformers vector - ]; - testHaskellDepends = [ - base containers hedgehog mmorph storable-tuple tasty tasty-hedgehog - text vector - ]; - benchmarkHaskellDepends = [ - base deepseq gauge hashable hashtables random random-shuffle - unordered-containers - ]; - description = "Standard library for linear types"; - license = lib.licenses.mit; - }) {}; - - "linear-base_0_3_0" = callPackage ({ mkDerivation, base, containers, deepseq, gauge, ghc-prim , hashable, hashtables, hedgehog, inspection-testing , linear-generics, mmorph, MonadRandom, primitive, random @@ -178816,7 +178370,6 @@ self: { ]; description = "Standard library for linear types"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "linear-circuit" = callPackage @@ -178838,6 +178391,7 @@ self: { ]; description = "Compute resistance of linear electrical circuits"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "linear-code" = callPackage @@ -178992,6 +178546,7 @@ self: { description = "Use SMT solvers to solve linear systems over integers and rationals"; license = lib.licenses.bsd3; badPlatforms = [ "aarch64-linux" ]; + hydraPlatforms = lib.platforms.none; }) {}; "linearmap-category" = callPackage @@ -179062,10 +178617,8 @@ self: { ({ mkDerivation, base, hspec, hyphenation }: mkDerivation { pname = "linebreak"; - version = "1.1.0.1"; - sha256 = "11vqz7zv8ihvhbyma9j6pvxainxfg4kml9fylfjy9jpfvilxq5vq"; - revision = "1"; - editedCabalFile = "0pg3r5zvb13sfyhskyadllxpd2l7xvzvjj8r8rvlq248riq78qdc"; + version = "1.1.0.2"; + sha256 = "0i2b7a9f29iyr98x7j2wcagdwxl79rljamch4893vg2syca3h4f5"; libraryHaskellDepends = [ base hyphenation ]; testHaskellDepends = [ base hspec hyphenation ]; description = "breaks strings to fit width"; @@ -179304,6 +178857,8 @@ self: { ]; description = "Lightweight library for building HTTP API"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "linnet-aeson" = callPackage @@ -179321,6 +178876,7 @@ self: { ]; description = "Aeson JSON support for Linnet"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; }) {}; "linnet-conduit" = callPackage @@ -179341,6 +178897,7 @@ self: { ]; description = "Conduit-backed support for streaming in Linnet"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; }) {}; "linode" = callPackage @@ -179438,6 +178995,8 @@ self: { description = "Bindings to Linux evdev input device interface"; license = lib.licenses.bsd3; platforms = lib.platforms.linux; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "linux-file-extents" = callPackage @@ -179566,6 +179125,8 @@ self: { libraryHaskellDepends = [ base bytestring ]; description = "Read, set and list extended attributes"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "linx-gateway" = callPackage @@ -179627,6 +179188,8 @@ self: { pname = "lio-fs"; version = "0.0.1.2"; sha256 = "1zzxsr0kg3bxm2wzhsqw2irk5myzshgqhr3fxi062hzw2rh0nqn9"; + revision = "1"; + editedCabalFile = "1vwdsizbk7h0l10fsn8bql60yc8w5vy7fr0x0z9md6rpmsyfxrr2"; libraryHaskellDepends = [ base bytestring containers directory filepath lio SHA unix xattr ]; @@ -179677,7 +179240,6 @@ self: { description = "RISC-V Core"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lipsum-gen" = callPackage @@ -180101,9 +179663,7 @@ self: { ]; description = "List all remote forwards for mail accounts stored in a SQL database"; license = lib.licenses.agpl3Only; - hydraPlatforms = lib.platforms.none; mainProgram = "list-remote-forwards"; - broken = true; }) {}; "list-singleton" = callPackage @@ -180209,6 +179769,8 @@ self: { ]; description = "A \"libcurl\"-based streaming HTTP client"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "list-t-text" = callPackage @@ -180540,22 +180102,6 @@ self: { }) {}; "little-rio" = callPackage - ({ mkDerivation, base, deepseq, exceptions, microlens - , microlens-mtl, mtl, primitive, resourcet, unliftio-core - }: - mkDerivation { - pname = "little-rio"; - version = "0.2.2"; - sha256 = "1cbadsbhhgls6p46gga4l32b0fhmvp6r9mycaj2srsfdcnwkydr9"; - libraryHaskellDepends = [ - base deepseq exceptions microlens microlens-mtl mtl primitive - resourcet unliftio-core - ]; - description = "When you need just the RIO monad"; - license = lib.licenses.bsd3; - }) {}; - - "little-rio_1_0_1" = callPackage ({ mkDerivation, base, deepseq, exceptions, little-logger , microlens, microlens-mtl, mtl, primitive, resourcet , unliftio-core @@ -180570,7 +180116,6 @@ self: { ]; description = "When you need just the RIO monad"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "live-sequencer" = callPackage @@ -181191,8 +180736,6 @@ self: { ]; description = "Higher level API for working with LMDB"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lmdb-simple" = callPackage @@ -181208,6 +180751,8 @@ self: { benchmarkHaskellDepends = [ base criterion ]; description = "Simple API for LMDB"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lmonad" = callPackage @@ -181305,6 +180850,7 @@ self: { description = "Support for developing against the LNURL protocol"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lnurl-authenticator" = callPackage @@ -181390,20 +180936,6 @@ self: { }) {}; "loc" = callPackage - ({ mkDerivation, base, containers, doctest, hedgehog }: - mkDerivation { - pname = "loc"; - version = "0.1.3.16"; - sha256 = "0bizqfczhc5higdzrrhinr5q3s971a3klfl3gpffnq9gyzd16nrq"; - revision = "2"; - editedCabalFile = "18fwdgf8l6nrnijla1x5c50ab05snaza27qdkya07sis2fa8286c"; - libraryHaskellDepends = [ base containers ]; - testHaskellDepends = [ base containers doctest hedgehog ]; - description = "Types representing line and column positions and ranges in text files"; - license = lib.licenses.asl20; - }) {}; - - "loc_0_1_4_0" = callPackage ({ mkDerivation, base, containers, hedgehog, hspec, hspec-hedgehog }: mkDerivation { @@ -181418,7 +180950,6 @@ self: { ]; description = "Types representing line and column positions and ranges in text files"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "loc-test" = callPackage @@ -181430,8 +180961,6 @@ self: { libraryHaskellDepends = [ base containers hedgehog loc ]; description = "Test-related utilities related to the /loc/ package"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "local-address" = callPackage @@ -181696,6 +181225,8 @@ self: { ]; description = "Structured logging solution (base package)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "log-domain" = callPackage @@ -181736,7 +181267,9 @@ self: { ]; description = "An extensible log effect using extensible-effects"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "log-example"; + broken = true; }) {}; "log-effect-syslog" = callPackage @@ -181753,6 +181286,7 @@ self: { ]; description = "Syslog functions for log-effect"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "log-effectful" = callPackage @@ -181766,6 +181300,7 @@ self: { testHaskellDepends = [ aeson base effectful-core log-base text ]; description = "Adaptation of the log library for the effectful ecosystem"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "log-elasticsearch" = callPackage @@ -181786,6 +181321,7 @@ self: { ]; description = "Structured logging solution (Elasticsearch back end)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "log-postgres" = callPackage @@ -182135,7 +181671,6 @@ self: { description = "Journald back-end for logging-facade"; license = lib.licenses.mit; badPlatforms = lib.platforms.darwin; - hydraPlatforms = lib.platforms.none; }) {}; "logging-facade-syslog" = callPackage @@ -182212,20 +181747,6 @@ self: { }) {}; "logict" = callPackage - ({ mkDerivation, async, base, mtl, tasty, tasty-hunit }: - mkDerivation { - pname = "logict"; - version = "0.7.1.0"; - sha256 = "1d22b7r8lnak5k8ars166cxbk1lv7gf8g0qs604irsx2s474ybi7"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base mtl ]; - testHaskellDepends = [ async base mtl tasty tasty-hunit ]; - description = "A backtracking logic-programming monad"; - license = lib.licenses.bsd3; - }) {}; - - "logict_0_8_0_0" = callPackage ({ mkDerivation, async, base, mtl, tasty, tasty-hunit }: mkDerivation { pname = "logict"; @@ -182237,18 +181758,31 @@ self: { testHaskellDepends = [ async base mtl tasty tasty-hunit ]; description = "A backtracking logic-programming monad"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "logict-sequence" = callPackage - ({ mkDerivation, base, logict, mtl, sequence, type-aligned }: + ({ mkDerivation, base, containers, gauge, hedgehog, hedgehog-fn + , hspec, hspec-hedgehog, list-t, logict, mmorph, mtl, sequence + , transformers + }: mkDerivation { pname = "logict-sequence"; - version = "0.1.0.1"; - sha256 = "15cxn5v3afm5688x972vvd6j7d7x889jwdhnlilpy1c2nzfl9w3i"; - libraryHaskellDepends = [ base logict mtl sequence type-aligned ]; + version = "0.2.0.2"; + sha256 = "0875f15rnfya99h5lfjhhx598y7hsssa927j138zk5dhpz0v3b34"; + libraryHaskellDepends = [ + base logict mmorph mtl sequence transformers + ]; + testHaskellDepends = [ + base hedgehog hedgehog-fn hspec hspec-hedgehog logict mmorph mtl + sequence transformers + ]; + benchmarkHaskellDepends = [ + base containers gauge list-t logict mtl + ]; description = "A backtracking logic-programming monad with asymptotic improvements to msplit"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "logict-state" = callPackage @@ -182260,8 +181794,6 @@ self: { libraryHaskellDepends = [ base logict mtl transformers ]; description = "Library for logic programming based on haskell package logict"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "loglevel" = callPackage @@ -182420,7 +181952,6 @@ self: { description = "A library for lattice cryptography"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lol-apps" = callPackage @@ -182646,7 +182177,6 @@ self: { badPlatforms = [ "aarch64-linux" ]; hydraPlatforms = lib.platforms.none; mainProgram = "longshot"; - broken = true; }) {}; "lookup-tables" = callPackage @@ -182865,18 +182395,18 @@ self: { , constraints, containers, cryptonite, data-default , first-class-families, fmt, lens, morley, morley-prelude, mtl , named, optparse-applicative, singletons, singletons-base - , template-haskell, text, text-manipulate, unordered-containers - , vinyl, with-utf8 + , template-haskell, text, text-manipulate, type-errors + , unordered-containers, vinyl, with-utf8 }: mkDerivation { pname = "lorentz"; - version = "0.14.1"; - sha256 = "0qvg3b0hmnjwarmvsynz7f2y362r6wszzm46168154xwmgyrkb3h"; + version = "0.15.0"; + sha256 = "10nppxymkp7b5vqcrkrm7jd5xg84hvczvvrrh2digdawqmxrakgl"; libraryHaskellDepends = [ aeson-pretty base-noprelude bimap bytestring constraints containers cryptonite data-default first-class-families fmt lens morley morley-prelude mtl named optparse-applicative singletons - singletons-base template-haskell text text-manipulate + singletons-base template-haskell text text-manipulate type-errors unordered-containers vinyl with-utf8 ]; description = "EDSL for the Michelson Language"; @@ -182950,6 +182480,8 @@ self: { ]; description = "Turning images into text using Braille font"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "loup" = callPackage @@ -183014,8 +182546,6 @@ self: { ]; description = "An EDSL for diagrams based based on linear constraints"; license = lib.licenses.agpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lp-diagrams-svg" = callPackage @@ -183036,6 +182566,7 @@ self: { description = "SVG Backend for lp-diagrams"; license = "GPL"; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lpeg" = callPackage @@ -183364,30 +182895,30 @@ self: { ]; description = "Parameterized file evaluator"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "ltext"; }) {}; "lti13" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, file-embed - , hspec, http-client, http-types, jose-jwt, oidc-client, QuickCheck - , safe-exceptions, text, th-utilities + , hspec, hspec-discover, http-client, http-types, jose-jwt + , oidc-client, QuickCheck, safe-exceptions, text, th-utilities }: mkDerivation { pname = "lti13"; - version = "0.2.0.3"; - sha256 = "1ls1hfyivmx5yi9i15m95j9j12agyrmfiwza3w9dfa23c210fcxh"; + version = "0.3.0.0"; + sha256 = "0riwrdpfjq1zpz37g0qw34gbf86amb31zz8n3x1xqsrnj69drc6w"; libraryHaskellDepends = [ aeson base bytestring containers http-client http-types jose-jwt oidc-client safe-exceptions text ]; testHaskellDepends = [ - aeson base bytestring file-embed hspec QuickCheck text th-utilities + aeson base bytestring containers file-embed hspec http-client + http-types jose-jwt oidc-client QuickCheck safe-exceptions text + th-utilities ]; - description = "Core functionality for LTI 1.3."; + testToolDepends = [ hspec-discover ]; + description = "Core functionality for LTI 1.3"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ltiv1p1" = callPackage @@ -183445,20 +182976,6 @@ self: { }) {}; "lua" = callPackage - ({ mkDerivation, base, lua5_3, tasty, tasty-hunit }: - mkDerivation { - pname = "lua"; - version = "2.1.0"; - sha256 = "00fcx1by3b2bjb3sc86azr3gmy9jd1b0gilbz48pkbb7cw4p5z1c"; - configureFlags = [ "-fsystem-lua" "-f-use-pkgconfig" ]; - libraryHaskellDepends = [ base ]; - librarySystemDepends = [ lua5_3 ]; - testHaskellDepends = [ base tasty tasty-hunit ]; - description = "Lua, an embeddable scripting language"; - license = lib.licenses.mit; - }) {inherit (pkgs) lua5_3;}; - - "lua_2_2_1" = callPackage ({ mkDerivation, base, lua5_4, tasty, tasty-hunit }: mkDerivation { pname = "lua"; @@ -183470,7 +182987,6 @@ self: { testHaskellDepends = [ base tasty tasty-hunit ]; description = "Lua, an embeddable scripting language"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) lua5_4;}; "lua-arbitrary" = callPackage @@ -183622,6 +183138,8 @@ self: { testHaskellDepends = [ base hspec HUnit lucid ]; description = "Provides ARIA attributes for Lucid templates"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lucid-cdn" = callPackage @@ -183751,8 +183269,6 @@ self: { ]; description = "Clear to write, read and edit DSL for HTML"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "lucid2-htmx" = callPackage @@ -183766,6 +183282,7 @@ self: { description = "Use htmx in your lucid templates"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "lucienne" = callPackage @@ -184856,9 +184373,7 @@ self: { ]; description = "Monadic DSL for building constraint solvers using basic propagators"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "sudoku-exe"; - broken = true; }) {}; "madlang" = callPackage @@ -185017,6 +184532,7 @@ self: { ]; description = "Compute solutions for Magico puzzle"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "magico"; }) {}; @@ -185031,6 +184547,8 @@ self: { testHaskellDepends = [ base ghc-prim ]; description = "magma is an algebraic structure"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "magmas" = callPackage @@ -185415,8 +184933,8 @@ self: { pname = "managed"; version = "1.0.9"; sha256 = "0vx8aim8bcyyvxxnmi1xkbl3kwrvskjn99z3y8h458g7nsinsisd"; - revision = "2"; - editedCabalFile = "1hnhi2d5s06bhp2klf9xw9yipymisfyfvb83b6rqfiy549z6ij27"; + revision = "3"; + editedCabalFile = "017h9533j7rlxlsf65ynxpva59yr0qwrdmvhp7if141i98ld4664"; libraryHaskellDepends = [ base transformers ]; description = "A monad for managed values"; license = lib.licenses.bsd3; @@ -186042,8 +185560,6 @@ self: { ]; description = "A set of classes and instances for working with key/value mappings"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "map-exts" = callPackage @@ -186087,6 +185603,8 @@ self: { ]; description = "foldl wrappers for map-reduce"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "map-syntax" = callPackage @@ -186097,8 +185615,8 @@ self: { pname = "map-syntax"; version = "0.3"; sha256 = "0b3ddi998saw5gi5r4bjbpid03rxlifn08zv15wf0b90ambhcc4k"; - revision = "4"; - editedCabalFile = "09sr3lzgkqs59vnwsimqgv098h3hj4srr2avza3z05gfkvxqj8yw"; + revision = "5"; + editedCabalFile = "0vfrq4gbd07jaz656lrxx7yar8lbgimkvkij52sn6d403wak20cv"; libraryHaskellDepends = [ base containers mtl ]; testHaskellDepends = [ base containers deepseq hspec HUnit mtl QuickCheck transformers @@ -186173,8 +185691,8 @@ self: { ({ mkDerivation, base, tidal }: mkDerivation { pname = "maquinitas-tidal"; - version = "0.2.11"; - sha256 = "1bg0az68jzxkb54rx7zf7bbkdkp5h0aqxyy78d8caaimc5ch2mbv"; + version = "0.2.17"; + sha256 = "1rb72b2p0d61b36d73b0rw6bw7qj125syh3w3b5lr77r8km1np84"; libraryHaskellDepends = [ base tidal ]; description = "library for MIDI control of hardware"; license = lib.licenses.mit; @@ -186419,6 +185937,7 @@ self: { ]; description = "Abstraction for HTML-embedded content"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "markup-preview" = callPackage @@ -186613,7 +186132,6 @@ self: { ]; description = "Markup language preprocessor for Haskell"; license = lib.licenses.gpl2Only; - hydraPlatforms = lib.platforms.none; mainProgram = "marxup"; }) {}; @@ -187451,6 +186969,7 @@ self: { ]; description = "Terminal client for the Mattermost chat system"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "matterhorn"; maintainers = [ lib.maintainers.kiwi ]; }) {}; @@ -187703,7 +187222,9 @@ self: { ]; description = "List contents of an mbox file containing e-mails"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "lsmbox"; + broken = true; }) {}; "mbtiles" = callPackage @@ -187832,32 +187353,6 @@ self: { }) {}; "mcmc" = callPackage - ({ mkDerivation, aeson, async, base, bytestring, circular - , containers, covariance, criterion, data-default, deepseq - , directory, dirichlet, double-conversion, hmatrix, hspec - , log-domain, math-functions, microlens, mwc-random, pretty-show - , primitive, statistics, time, transformers, vector, zlib - }: - mkDerivation { - pname = "mcmc"; - version = "0.6.2.2"; - sha256 = "1si81jv8dfwm9lfq3fvfc4mibkg7p61vkjhsgfsmban74v02ja73"; - libraryHaskellDepends = [ - aeson async base bytestring circular containers covariance - data-default deepseq directory dirichlet double-conversion hmatrix - log-domain math-functions microlens mwc-random pretty-show - primitive statistics time transformers vector zlib - ]; - testHaskellDepends = [ base hspec mwc-random statistics ]; - benchmarkHaskellDepends = [ - base criterion math-functions microlens mwc-random - ]; - description = "Sample from a posterior using Markov chain Monte Carlo"; - license = lib.licenses.gpl3Plus; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "mcmc_0_8_0_1" = callPackage ({ mkDerivation, ad, aeson, async, base, bytestring, circular , containers, covariance, criterion, directory, dirichlet , fixed-vector, hmatrix, hspec, log-domain, math-functions @@ -187880,7 +187375,6 @@ self: { ]; description = "Sample from a posterior using Markov chain Monte Carlo"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.dschrempf ]; }) {}; @@ -188166,7 +187660,6 @@ self: { description = "A schema language for JSON"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mediabus" = callPackage @@ -188440,6 +187933,27 @@ self: { license = lib.licenses.bsd2; }) {}; + "megaparsec_9_3_0" = callPackage + ({ mkDerivation, base, bytestring, case-insensitive, containers + , criterion, deepseq, mtl, parser-combinators, scientific, text + , transformers, weigh + }: + mkDerivation { + pname = "megaparsec"; + version = "9.3.0"; + sha256 = "01b05s3chlidz48lrwlyffw712vy4hlfijlh4wj9lq0fdy2b1z0r"; + libraryHaskellDepends = [ + base bytestring case-insensitive containers deepseq mtl + parser-combinators scientific text transformers + ]; + benchmarkHaskellDepends = [ + base bytestring containers criterion deepseq text weigh + ]; + description = "Monadic parser combinators"; + license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + }) {}; + "megaparsec-tests" = callPackage ({ mkDerivation, base, bytestring, case-insensitive, containers , hspec, hspec-discover, hspec-expectations, hspec-megaparsec @@ -188464,6 +187978,32 @@ self: { license = lib.licenses.bsd2; }) {}; + "megaparsec-tests_9_3_0" = callPackage + ({ mkDerivation, base, bytestring, case-insensitive, containers + , hspec, hspec-discover, hspec-expectations, hspec-megaparsec + , megaparsec, mtl, parser-combinators, QuickCheck, scientific + , temporary, text, transformers + }: + mkDerivation { + pname = "megaparsec-tests"; + version = "9.3.0"; + sha256 = "1ra1y1gdcxav0xi2djril3l3kb7kvzcjnmxxspmn2nj2921sb0yi"; + libraryHaskellDepends = [ + base bytestring containers hspec hspec-expectations + hspec-megaparsec megaparsec mtl QuickCheck text transformers + ]; + testHaskellDepends = [ + base bytestring case-insensitive containers hspec + hspec-expectations hspec-megaparsec megaparsec mtl + parser-combinators QuickCheck scientific temporary text + transformers + ]; + testToolDepends = [ hspec-discover ]; + description = "Test utilities and the test suite of Megaparsec"; + license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + }) {}; + "meldable-heap" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -188506,6 +188046,8 @@ self: { ]; description = "An Elf parser"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "mellon-core" = callPackage @@ -188905,7 +188447,9 @@ self: { benchmarkHaskellDepends = [ base bytestring criterion random ]; description = "Generate human memorable strings from binary data"; license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; mainProgram = "membits"; + broken = true; }) {}; "memory" = callPackage @@ -188914,10 +188458,10 @@ self: { }: mkDerivation { pname = "memory"; - version = "0.16.0"; - sha256 = "0zzxyr2b7gj92h3jzaq1lfqfyfkfj4l636ry35191i9bp3wa0v8l"; + version = "0.17.0"; + sha256 = "0yl3ivvn7i9wbx910b7bzj9c3g0jjjk91j05wj74qb5zx2yyf9rk"; revision = "1"; - editedCabalFile = "02ql04drvyk8sdadxs4yi1h4aic0pxgnrph3j5ndcm6r7hfnv8py"; + editedCabalFile = "1gybf726kz17jm1am0rphi0srmyqyza45y6jdqbq0b8sspm8kggb"; libraryHaskellDepends = [ base basement bytestring deepseq ghc-prim ]; @@ -189084,6 +188628,8 @@ self: { ]; description = "Haskell binding to Mercury API for ThingMagic RFID readers"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "merge" = callPackage @@ -189160,20 +188706,6 @@ self: { }) {}; "mergeless" = callPackage - ({ mkDerivation, aeson, base, containers, deepseq, mtl, validity - , validity-containers - }: - mkDerivation { - pname = "mergeless"; - version = "0.3.0.0"; - sha256 = "14kgfh672fywvrjzb9kzhrnw10lxq44216rwniavn68abkg6yx94"; - libraryHaskellDepends = [ - aeson base containers deepseq mtl validity validity-containers - ]; - license = lib.licenses.mit; - }) {}; - - "mergeless_0_4_0_0" = callPackage ({ mkDerivation, aeson, autodocodec, base, containers, deepseq, mtl , text, validity, validity-containers }: @@ -189186,7 +188718,6 @@ self: { validity-containers ]; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "mergeless-persistent" = callPackage @@ -189894,6 +189425,8 @@ self: { doHaddock = false; description = "A minimal base to work around GHC bugs"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "microbench" = callPackage @@ -189951,6 +189484,8 @@ self: { ]; description = "A Microformats 2 parser"; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "microformats2-types" = callPackage @@ -189995,12 +189530,12 @@ self: { license = lib.licenses.bsd3; }) {}; - "microlens_0_4_13_0" = callPackage + "microlens_0_4_13_1" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "microlens"; - version = "0.4.13.0"; - sha256 = "18qhnan4l8wd5g7ks93m627ymsyvjd82yahwd0ycg8rhxbqd08gw"; + version = "0.4.13.1"; + sha256 = "1z6ph89sgdhgdf8sqaw9g978mlnvlc4k8y50pssaxxplizpanm0a"; libraryHaskellDepends = [ base ]; description = "A tiny lens library with no dependencies"; license = lib.licenses.bsd3; @@ -190008,27 +189543,6 @@ self: { }) {}; "microlens-aeson" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring, deepseq - , hashable, microlens, scientific, tasty, tasty-hunit, text - , unordered-containers, vector - }: - mkDerivation { - pname = "microlens-aeson"; - version = "2.4.1"; - sha256 = "0h11h1vg467aq1w6gfb0jvzvhk6xsl1i1bl7qfw5kdsnvrd3nbg9"; - libraryHaskellDepends = [ - aeson attoparsec base bytestring deepseq hashable microlens - scientific text unordered-containers vector - ]; - testHaskellDepends = [ - aeson base bytestring deepseq hashable microlens tasty tasty-hunit - text unordered-containers vector - ]; - description = "Law-abiding lenses for Aeson, using microlens"; - license = lib.licenses.mit; - }) {}; - - "microlens-aeson_2_5_0" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, hashable , microlens, scientific, tasty, tasty-hunit, text, vector }: @@ -190046,7 +189560,6 @@ self: { ]; description = "Law-abiding lenses for Aeson, using microlens"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "microlens-contra" = callPackage @@ -190060,6 +189573,18 @@ self: { license = lib.licenses.bsd3; }) {}; + "microlens-contra_0_1_0_3" = callPackage + ({ mkDerivation, base, microlens }: + mkDerivation { + pname = "microlens-contra"; + version = "0.1.0.3"; + sha256 = "1jxm6shmvacbic6i6hask0kv89kramnk77pcxpv4gv4xydjsr88n"; + libraryHaskellDepends = [ base microlens ]; + description = "True folds and getters for microlens"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "microlens-each" = callPackage ({ mkDerivation, base, microlens }: mkDerivation { @@ -190088,14 +189613,14 @@ self: { license = lib.licenses.bsd3; }) {}; - "microlens-ghc_0_4_14_0" = callPackage + "microlens-ghc_0_4_14_1" = callPackage ({ mkDerivation, array, base, bytestring, containers, microlens , transformers }: mkDerivation { pname = "microlens-ghc"; - version = "0.4.14.0"; - sha256 = "1iwj2ngkd69il0rncjl84ackphc6jj48skiqgpi27b18l5nwi3v1"; + version = "0.4.14.1"; + sha256 = "1h6wcgv50mxqz09wkamqjgw90382a4m31mq7q57vmzmkl489nw2n"; libraryHaskellDepends = [ array base bytestring containers microlens transformers ]; @@ -190119,6 +189644,22 @@ self: { license = lib.licenses.bsd3; }) {}; + "microlens-mtl_0_2_0_3" = callPackage + ({ mkDerivation, base, microlens, mtl, transformers + , transformers-compat + }: + mkDerivation { + pname = "microlens-mtl"; + version = "0.2.0.3"; + sha256 = "1ilz0zyyk9f6h97gjsaqq65njfs23fk3wxhigvj4z0brf7rnlssd"; + libraryHaskellDepends = [ + base microlens mtl transformers transformers-compat + ]; + description = "microlens support for Reader/Writer/State from mtl"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "microlens-platform" = callPackage ({ mkDerivation, base, hashable, microlens, microlens-ghc , microlens-mtl, microlens-th, text, unordered-containers, vector @@ -190135,14 +189676,14 @@ self: { license = lib.licenses.bsd3; }) {}; - "microlens-platform_0_4_3_2" = callPackage + "microlens-platform_0_4_3_3" = callPackage ({ mkDerivation, base, hashable, microlens, microlens-ghc , microlens-mtl, microlens-th, text, unordered-containers, vector }: mkDerivation { pname = "microlens-platform"; - version = "0.4.3.2"; - sha256 = "12nkwlpj0lr50lw0gr1mf306a94w0x6zkbl97ss4m2cd28im21sj"; + version = "0.4.3.3"; + sha256 = "13s6m07whp3h05vqm2hz3qv5ai51ll6q4s3kf8nr3pif6wxqbisy"; libraryHaskellDepends = [ base hashable microlens microlens-ghc microlens-mtl microlens-th text unordered-containers vector @@ -190188,6 +189729,24 @@ self: { license = lib.licenses.bsd3; }) {}; + "microlens-th_0_4_3_11" = callPackage + ({ mkDerivation, base, containers, microlens, tagged + , template-haskell, th-abstraction, transformers + }: + mkDerivation { + pname = "microlens-th"; + version = "0.4.3.11"; + sha256 = "1vjjaclfxr0kvlpmj8zh7f6ci4n4b8vynqd67zszx42al7gal6pj"; + libraryHaskellDepends = [ + base containers microlens template-haskell th-abstraction + transformers + ]; + testHaskellDepends = [ base microlens tagged ]; + description = "Automatic generation of record lenses for microlens"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "micrologger" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, hspec, lens , text, text-format, time, transformers @@ -190348,6 +189907,7 @@ self: { description = "Convert between datatypes of the midi and the alsa packages"; license = lib.licenses.bsd3; platforms = lib.platforms.linux; + hydraPlatforms = lib.platforms.none; }) {}; "midi-music-box" = callPackage @@ -190465,7 +190025,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "midisurface"; - broken = true; }) {}; "mighttpd" = callPackage @@ -190556,8 +190115,6 @@ self: { ]; description = "Semi-automatic database schema migrations"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "migrant-hdbc" = callPackage @@ -190576,7 +190133,6 @@ self: { ]; description = "Semi-automatic database schema migrations"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "migrant-postgresql-simple" = callPackage @@ -190598,6 +190154,7 @@ self: { description = "Semi-automatic database schema migrations"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "migrant-sqlite-simple" = callPackage @@ -190615,7 +190172,6 @@ self: { ]; description = "Semi-automatic database schema migrations"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "mikmod" = callPackage @@ -190795,9 +190351,21 @@ self: { ]; description = "MIME implementation for String's"; license = "unknown"; + hydraPlatforms = lib.platforms.none; }) {}; "mime-types" = callPackage + ({ mkDerivation, base, bytestring, containers, text }: + mkDerivation { + pname = "mime-types"; + version = "0.1.0.9"; + sha256 = "1lkipa4v73z3l5lqs6sdhl898iq41kyxv2jb9agsajzgd58l6cha"; + libraryHaskellDepends = [ base bytestring containers text ]; + description = "Basic mime-type handling types and functions"; + license = lib.licenses.mit; + }) {}; + + "mime-types_0_1_1_0" = callPackage ({ mkDerivation, base, bytestring, containers, text }: mkDerivation { pname = "mime-types"; @@ -190806,6 +190374,7 @@ self: { libraryHaskellDepends = [ base bytestring containers text ]; description = "Basic mime-type handling types and functions"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "min-max-pqueue" = callPackage @@ -191357,6 +190926,7 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "mirror-tweet"; + broken = true; }) {}; "misfortune" = callPackage @@ -191961,22 +191531,6 @@ self: { }) {}; "mmorph" = callPackage - ({ mkDerivation, base, mtl, transformers, transformers-compat }: - mkDerivation { - pname = "mmorph"; - version = "1.1.5"; - sha256 = "0bq9m3hlfax1826gg5yhih79x33rvfx59wdh8yf43azd7l74bys6"; - revision = "1"; - editedCabalFile = "087v8ajcfpx4f0v4jxvv16h6jswgnkfnyfn28k406d5w3ihcx1wl"; - libraryHaskellDepends = [ - base mtl transformers transformers-compat - ]; - description = "Monad morphisms"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; - }) {}; - - "mmorph_1_2_0" = callPackage ({ mkDerivation, base, mtl, transformers, transformers-compat }: mkDerivation { pname = "mmorph"; @@ -191989,7 +191543,6 @@ self: { ]; description = "Monad morphisms"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; @@ -192048,8 +191601,6 @@ self: { libraryHaskellDepends = [ base directory ]; description = "A small library to deal with executable endings"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mmsyn4" = callPackage @@ -192064,7 +191615,6 @@ self: { executableHaskellDepends = [ base directory mmsyn3 process ]; description = "The \"glue\" between electronic tables and GraphViz"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "mmsyn4"; }) {}; @@ -192125,7 +191675,6 @@ self: { ]; description = "A musical instrument synthesizer or a tool for Ukrainian language listening"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "mmsyn6ukra"; }) {}; @@ -192171,7 +191720,6 @@ self: { ]; description = "Modifies the amplitudes of the sounds representations created by mmsyn7ukr-array and mmsyn7ukr packages"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "mmsyn7l"; }) {}; @@ -192228,7 +191776,6 @@ self: { ]; description = "A simple reduced basic interface to some SoX functionality or to produce a voice that can be used by mmsyn7h-array, dobutokO2-array and other similar packages"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "mmsyn7ukr-common" = callPackage @@ -192240,7 +191787,6 @@ self: { libraryHaskellDepends = [ base directory mmsyn3 process ]; description = "Some common for mmsyn7ukr and mmsyn7ukr-array functionality using SoX"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "mmtf" = callPackage @@ -192402,7 +191948,6 @@ self: { description = "Mock records of functions easily"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mockery" = callPackage @@ -192457,6 +192002,8 @@ self: { ]; description = "Communicate with Modbus devices over TCP"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "model" = callPackage @@ -192476,6 +192023,8 @@ self: { ]; description = "Derive a model of a data type using Generics"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "modelicaparser" = callPackage @@ -192581,13 +192130,13 @@ self: { }) {}; "modular-arithmetic" = callPackage - ({ mkDerivation, base, doctest, typelits-witnesses }: + ({ mkDerivation, base, doctest }: mkDerivation { pname = "modular-arithmetic"; version = "2.0.0.2"; sha256 = "1bbn3pwvpl9v7a8gkxx83w2s8mk2q9gin7yvkkr97f64rdf8lnrq"; - libraryHaskellDepends = [ base typelits-witnesses ]; - testHaskellDepends = [ base doctest typelits-witnesses ]; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ base doctest ]; description = "A type for integers modulo some constant"; license = lib.licenses.bsd3; }) {}; @@ -192927,9 +192476,8 @@ self: { ]; description = "A library for probabilistic programming"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "example"; - broken = true; + maintainers = [ lib.maintainers.turion ]; }) {}; "monad-bool" = callPackage @@ -193087,6 +192635,8 @@ self: { ]; description = "Just like monad-control, except less efficient, and the monadic state terms are all * -> *"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "monad-control-identity" = callPackage @@ -193243,20 +192793,17 @@ self: { description = "A class of monads which can do http requests"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "monad-interleave" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "monad-interleave"; - version = "0.1"; - sha256 = "09hpl7ah5ivsrx4xlk96d129n1j4wpx7kj6l95zwadyaz7rj9fp7"; + version = "0.2.0.1"; + sha256 = "0ajn06f3q181nf6xa4kish04bv74crqmsmk7i1ny4kw1m9ag139d"; libraryHaskellDepends = [ base ]; description = "Monads with an unsaveInterleaveIO-like operation"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "monad-introspect" = callPackage @@ -193376,8 +192923,8 @@ self: { pname = "monad-logger"; version = "0.3.37"; sha256 = "1z275a428zcj73zz0cpfha2adwiwqqqp7klx3kbd3i9rl20xa106"; - revision = "2"; - editedCabalFile = "1kkw07kk8gv7d9iarradqcqzjpdfh5shjlhfbf2v25mmcpchp6hd"; + revision = "3"; + editedCabalFile = "1dzkw08b4ijacdw0vcfxlr13rd819x2yj7b6sr9jrrwicd45zm1z"; libraryHaskellDepends = [ base bytestring conduit conduit-extra exceptions fast-logger lifted-base monad-control monad-loops mtl resourcet stm stm-chans @@ -193497,6 +193044,8 @@ self: { ]; description = "syslog output for monad-logger"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "monad-loops" = callPackage @@ -193722,20 +193271,6 @@ self: { }) {}; "monad-parallel" = callPackage - ({ mkDerivation, base, parallel, transformers, transformers-compat - }: - mkDerivation { - pname = "monad-parallel"; - version = "0.7.2.5"; - sha256 = "0yjn8acn8z8b1v5nnmwrmrcim9lqh942kgi2c03cnnklfdc1cqip"; - libraryHaskellDepends = [ - base parallel transformers transformers-compat - ]; - description = "Parallel execution of monadic computations"; - license = lib.licenses.bsd3; - }) {}; - - "monad-parallel_0_8" = callPackage ({ mkDerivation, base, parallel, transformers, transformers-compat }: mkDerivation { @@ -193747,7 +193282,6 @@ self: { ]; description = "Parallel execution of monadic computations"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "monad-parallel-progressbar" = callPackage @@ -193902,6 +193436,7 @@ self: { ]; description = "A new, simple, composable concurrency abstraction"; license = lib.licenses.mit; + maintainers = [ lib.maintainers.turion ]; }) {}; "monad-skeleton" = callPackage @@ -194109,6 +193644,8 @@ self: { libraryHaskellDepends = [ base mtl transformers ]; description = "Tree data structure for nondeterministic computations"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "monad-tx" = callPackage @@ -194152,8 +193689,6 @@ self: { ]; description = "Typeclasses for representing monad transformer unlifting"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "monad-unlift-ref" = callPackage @@ -194171,7 +193706,6 @@ self: { ]; description = "Typeclasses for representing monad transformer unlifting"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "monad-validate" = callPackage @@ -194292,6 +193826,8 @@ self: { ]; description = "A monad for using CryptoRandomGen"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "monadfibre" = callPackage @@ -194334,6 +193870,8 @@ self: { testHaskellDepends = [ base ]; description = "Recursion Schemes for Monadic version"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "monadiccp" = callPackage @@ -194475,7 +194013,6 @@ self: { ]; testHaskellDepends = [ base tasty tasty-hunit transformers ]; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; }) {}; "monadplus" = callPackage @@ -194502,8 +194039,6 @@ self: { libraryHaskellDepends = [ base mtl transformers ]; description = "Monad classes, using functional dependencies"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "monads-tf" = callPackage @@ -194611,6 +194146,8 @@ self: { pname = "mongoDB"; version = "2.7.1.2"; sha256 = "0csjhvsvy534lq7lvqx96dw6ia3737rg7q96174067k7mhkxwf9m"; + revision = "1"; + editedCabalFile = "06kdgrg2p2c9n6im1fy04y0rvlwc4xssmk9wvw33k9svhzld7afr"; libraryHaskellDepends = [ array base base16-bytestring base64-bytestring binary bson bytestring conduit conduit-extra containers cryptohash @@ -194833,14 +194370,31 @@ self: { license = lib.licenses.bsd3; }) {}; + "monoid-extras_0_6_2" = callPackage + ({ mkDerivation, base, criterion, groups, semigroupoids, semigroups + }: + mkDerivation { + pname = "monoid-extras"; + version = "0.6.2"; + sha256 = "1qaxp0cf2cvzvfpk7x9mjz1zmlpjfzxij8v2n45w89s7bq9ckvlw"; + libraryHaskellDepends = [ base groups semigroupoids ]; + benchmarkHaskellDepends = [ base criterion semigroups ]; + description = "Various extra monoid-related definitions and utilities"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "monoid-map" = callPackage - ({ mkDerivation, base, monoidal-containers, reflex, witherable }: + ({ mkDerivation, base, commutative-semigroups, monoidal-containers + , patch, reflex, witherable + }: mkDerivation { pname = "monoid-map"; - version = "0.1.1.0"; - sha256 = "0rqmgqvq19yjy3g977zm12ih7a3s3giv2dz32qw1xq8cqjxyc709"; + version = "0.2.0.0"; + sha256 = "0mmz57l0yfkdk3psaxyavs2v5hs860ja5a0wk08n2zar3br4fa2l"; libraryHaskellDepends = [ - base monoidal-containers reflex witherable + base commutative-semigroups monoidal-containers patch reflex + witherable ]; description = "A monoidal map with the right group instance"; license = lib.licenses.bsd3; @@ -194915,15 +194469,15 @@ self: { license = lib.licenses.bsd3; }) {}; - "monoid-subclasses_1_2" = callPackage + "monoid-subclasses_1_2_1" = callPackage ({ mkDerivation, base, bytestring, commutative-semigroups , containers, primes, QuickCheck, quickcheck-instances, tasty , tasty-quickcheck, text, vector }: mkDerivation { pname = "monoid-subclasses"; - version = "1.2"; - sha256 = "10ajd7pm0jgqvsyp61sjyfg4392nmrxir0fry4zc4l2rl8vw1q9s"; + version = "1.2.1"; + sha256 = "10q71zpj2q81q4dpb9mmsds0jwhcvlxqdgxk0kjiqf8i78qy54hn"; libraryHaskellDepends = [ base bytestring commutative-semigroups containers primes text vector @@ -195013,49 +194567,6 @@ self: { }) {}; "monomer" = callPackage - ({ mkDerivation, aeson, async, attoparsec, base, bytestring - , bytestring-to-vector, c2hs, containers, data-default, directory - , exceptions, extra, formatting, glew, hspec, http-client, HUnit - , JuicyPixels, lens, mtl, nanovg, OpenGL, OpenGLRaw, process - , random, safe, scientific, sdl2, silently, stm, text, text-show - , time, transformers, unordered-containers, vector, websockets - , wreq, wuss - }: - mkDerivation { - pname = "monomer"; - version = "1.3.0.0"; - sha256 = "19k31vppid5lyvqg4q4r07yzw9yisydhx012yn1fzlfjwc89g9bp"; - revision = "3"; - editedCabalFile = "1jz12ww843d0qk7gy6f8fw4l2mpynkcs9knxfc865zyhcjvimfw2"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - async attoparsec base bytestring bytestring-to-vector containers - data-default exceptions extra formatting http-client JuicyPixels - lens mtl nanovg OpenGL process safe sdl2 stm text text-show time - transformers unordered-containers vector wreq - ]; - librarySystemDepends = [ glew ]; - libraryToolDepends = [ c2hs ]; - executableHaskellDepends = [ - aeson async attoparsec base bytestring bytestring-to-vector - containers data-default exceptions extra formatting http-client - JuicyPixels lens mtl nanovg OpenGL OpenGLRaw process random safe - scientific sdl2 stm text text-show time transformers - unordered-containers vector websockets wreq wuss - ]; - testHaskellDepends = [ - async attoparsec base bytestring bytestring-to-vector containers - data-default directory exceptions extra formatting hspec - http-client HUnit JuicyPixels lens mtl nanovg OpenGL process safe - sdl2 silently stm text text-show time transformers - unordered-containers vector wreq - ]; - description = "A GUI library for writing native Haskell applications"; - license = lib.licenses.bsd3; - }) {inherit (pkgs) glew;}; - - "monomer_1_5_0_0" = callPackage ({ mkDerivation, aeson, async, attoparsec, base, bytestring , bytestring-to-vector, c2hs, containers, data-default, exceptions , extra, formatting, glew, hspec, http-client, JuicyPixels, lens @@ -195092,7 +194603,6 @@ self: { ]; description = "A GUI library for writing native Haskell applications"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) glew;}; "monomer-hagrid" = callPackage @@ -195119,9 +194629,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "A datagrid widget for the Monomer library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "examples"; - broken = true; }) {}; "monomorphic" = callPackage @@ -195334,6 +194842,7 @@ self: { description = "Invocation helpers for the ReaderT-record-of-functions style"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "moonshine" = callPackage @@ -195421,38 +194930,40 @@ self: { "morley" = callPackage ({ mkDerivation, aeson, aeson-casing, aeson-pretty, base-noprelude , base58-bytestring, bimap, binary, bytestring, constraints - , containers, crypto-sodium, cryptonite, data-default, Diff - , elliptic-curve, first-class-families, fmt, galois-field - , generic-deriving, gitrev, haskeline, hex-text, lens, megaparsec - , memory, MonadRandom, morley-prelude, mtl, named - , optparse-applicative, pairing, parser-combinators, scientific - , semigroups, show-type, singletons, singletons-base, syb - , template-haskell, text, text-manipulate, th-lift-instances - , th-reify-many, time, timerep, uncaught-exception - , unordered-containers, vector, vinyl, with-utf8, wl-pprint-text + , constraints-extras, containers, crypto-sodium, cryptonite + , data-default, dependent-sum-template, Diff, elliptic-curve + , first-class-families, fmt, galois-field, generic-deriving, gitrev + , haskeline, hex-text, lens, megaparsec, memory, MonadRandom + , morley-prelude, mtl, named, optparse-applicative, pairing + , parser-combinators, scientific, semigroups, show-type, singletons + , singletons-base, some, syb, template-haskell, text + , text-manipulate, th-lift-instances, th-reify-many, time, timerep + , type-errors, uncaught-exception, unordered-containers, vector + , vinyl, with-utf8, wl-pprint-text }: mkDerivation { pname = "morley"; - version = "1.18.0"; - sha256 = "0kv4rcq8yqdnmf14dsf03196nc717cih2pd574cc7qvfv2frwgh7"; + version = "1.19.0"; + sha256 = "12rps1k1bky7bkx0zl17j9vs07w8fll0576ip02jd6sn1i6541fg"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson aeson-casing aeson-pretty base-noprelude base58-bytestring - bimap binary bytestring constraints containers crypto-sodium - cryptonite data-default Diff elliptic-curve first-class-families - fmt galois-field generic-deriving gitrev hex-text lens megaparsec - memory MonadRandom morley-prelude mtl named optparse-applicative - pairing parser-combinators scientific semigroups show-type - singletons singletons-base syb template-haskell text - text-manipulate th-lift-instances th-reify-many time timerep + bimap binary bytestring constraints constraints-extras containers + crypto-sodium cryptonite data-default dependent-sum-template Diff + elliptic-curve first-class-families fmt galois-field + generic-deriving gitrev hex-text lens megaparsec memory MonadRandom + morley-prelude mtl named optparse-applicative pairing + parser-combinators scientific semigroups show-type singletons + singletons-base some syb template-haskell text text-manipulate + th-lift-instances th-reify-many time timerep type-errors uncaught-exception unordered-containers vector vinyl with-utf8 wl-pprint-text ]; executableHaskellDepends = [ aeson base-noprelude base58-bytestring bytestring fmt haskeline - hex-text megaparsec MonadRandom morley-prelude named - optparse-applicative singletons text vinyl with-utf8 + hex-text megaparsec MonadRandom morley-prelude optparse-applicative + singletons text vinyl with-utf8 ]; description = "Developer tools for the Michelson Language"; license = lib.licenses.mit; @@ -195466,26 +194977,24 @@ self: { , containers, data-default, exceptions, fmt, hex-text , hspec-expectations, http-client, http-client-tls, http-types , HUnit, lens, lorentz, megaparsec, memory, morley, morley-prelude - , mtl, named, optparse-applicative, process, random - , safe-exceptions, scientific, servant, servant-client - , servant-client-core, singletons, syb, tasty, tasty-ant-xml - , tasty-discover, tasty-hunit-compat, text, time, universum - , unliftio + , mtl, optparse-applicative, process, random, safe-exceptions + , scientific, servant, servant-client, servant-client-core + , singletons, syb, tasty, tasty-ant-xml, tasty-discover + , tasty-hunit-compat, text, time, unliftio }: mkDerivation { pname = "morley-client"; - version = "0.2.1"; - sha256 = "0a55lmbk1b2h7469hv084a0gyp48w57hjz05wlpc4npm0gp1ijxw"; + version = "0.3.0"; + sha256 = "0wb6pgds6bijs2bfwdwzkpmhlbwfpx5lwxj4xj2pvd47410lzjfz"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson aeson-casing base-noprelude binary bytestring co-log co-log-core colourista constraints containers data-default fmt hex-text http-client http-client-tls http-types lens lorentz - megaparsec memory morley morley-prelude mtl named - optparse-applicative process random safe-exceptions scientific - servant servant-client servant-client-core singletons syb text time - universum unliftio + megaparsec memory morley morley-prelude mtl optparse-applicative + process random scientific servant servant-client + servant-client-core singletons syb text time unliftio ]; executableHaskellDepends = [ aeson base-noprelude data-default fmt morley morley-prelude @@ -195593,7 +195102,6 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "morloc"; - broken = true; }) {}; "morph" = callPackage @@ -195626,8 +195134,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql"; - version = "0.26.0"; - sha256 = "1x1hg60l7zbdb7kg2gx93zxknd9f7bbdvr6r9hcy8w86h8aplilm"; + version = "0.27.0"; + sha256 = "1d2wk0zw3qb22skv7g4xagl04las5xnh9f4223c4as9cf39pcrp9"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring containers morpheus-graphql-app @@ -195644,7 +195152,6 @@ self: { ]; description = "Morpheus GraphQL"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "morpheus-graphql-app" = callPackage @@ -195656,8 +195163,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql-app"; - version = "0.26.0"; - sha256 = "1dq0hnm1bsy43vbrs2rm5df5j9yy55azj420jf8fs71676xni7hn"; + version = "0.27.0"; + sha256 = "0mg12a8s2zcxcbm1zm5a4gn6vz8d9d1qdhk930zddxqbll5gq7nq"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring containers hashable megaparsec @@ -195672,7 +195179,6 @@ self: { ]; description = "Morpheus GraphQL App"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "morpheus-graphql-cli" = callPackage @@ -195695,6 +195201,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "morpheus"; + broken = true; }) {}; "morpheus-graphql-client" = callPackage @@ -195707,8 +195214,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql-client"; - version = "0.26.0"; - sha256 = "0n8x888qhamlb6pkk4sa864mb3y7h261s1f83waqg0d7qdwcp5nx"; + version = "0.27.0"; + sha256 = "120414v0rcvzgm9dc2fx8598d88dqnpvhkc8zh3y2gl3b1bl31jb"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring containers file-embed modern-uri @@ -195726,7 +195233,6 @@ self: { ]; description = "Morpheus GraphQL Client"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "morpheus-graphql-code-gen" = callPackage @@ -195738,8 +195244,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql-code-gen"; - version = "0.26.0"; - sha256 = "1mdhifqqj44dr9j2z4nh0m8n4836mv8cav9qn155b3nairfh3w3a"; + version = "0.27.0"; + sha256 = "0aw9fl0hzl657w2arybyk0zqxvbdz897kiqwsv52r50dnb5x2izf"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -195757,26 +195263,24 @@ self: { ]; description = "Morpheus GraphQL CLI"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "morpheus"; }) {}; "morpheus-graphql-code-gen-utils" = callPackage ({ mkDerivation, base, bytestring, containers - , morpheus-graphql-core, prettyprinter, relude, template-haskell - , text, unordered-containers + , morpheus-graphql-core, mtl, prettyprinter, relude + , template-haskell, text, unordered-containers }: mkDerivation { pname = "morpheus-graphql-code-gen-utils"; - version = "0.26.0"; - sha256 = "0nhv20vn8v73zri9ws3rwyi9xyshp6pm7v610rrwfa43wyxlpq5g"; + version = "0.27.0"; + sha256 = "1d5v3b63v9yf47a5hh2am6v09hwm4sfxls38iwvlxva3km0s1qgn"; libraryHaskellDepends = [ - base bytestring containers morpheus-graphql-core prettyprinter + base bytestring containers morpheus-graphql-core mtl prettyprinter relude template-haskell text unordered-containers ]; description = "Morpheus GraphQL CLI"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "morpheus-graphql-core" = callPackage @@ -195787,8 +195291,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql-core"; - version = "0.26.0"; - sha256 = "0cj78h29ryalxnx4hzpl5kywqdcvjxvxqlc6axibb1cmajn4kbqm"; + version = "0.27.0"; + sha256 = "0001pq7zj5rpjcg0jasd3vklisan2i8nxyk8d7xa31d4f1grn5ff"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring containers hashable megaparsec mtl relude @@ -195803,8 +195307,6 @@ self: { ]; description = "Morpheus GraphQL Core"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "morpheus-graphql-server" = callPackage @@ -195816,8 +195318,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql-server"; - version = "0.26.0"; - sha256 = "1aca18d60ja6awgsvwjjbikqhvspn3wans1dvh57g37ma1p1v331"; + version = "0.27.0"; + sha256 = "0cd6qczbb5cm12xv181pzq6d62nv7nf4w1yd3gmhzjfrks62lhwy"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base bytestring containers morpheus-graphql-app @@ -195832,7 +195334,6 @@ self: { ]; description = "Morpheus GraphQL"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "morpheus-graphql-subscriptions" = callPackage @@ -195842,8 +195343,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql-subscriptions"; - version = "0.26.0"; - sha256 = "1kmd37w3kp2mdhz64fwlyl9v7p10x3p6fbzw535kipic89y9pcx2"; + version = "0.27.0"; + sha256 = "138fcganlaj4fyq1aygiyy6f4hhw58n26ldrdkxhd66hr1mqv6j9"; libraryHaskellDepends = [ aeson base bytestring morpheus-graphql-app morpheus-graphql-core mtl relude text transformers unliftio-core unordered-containers @@ -195851,7 +195352,6 @@ self: { ]; description = "Morpheus GraphQL Subscriptions"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "morpheus-graphql-tests" = callPackage @@ -195860,8 +195360,8 @@ self: { }: mkDerivation { pname = "morpheus-graphql-tests"; - version = "0.18.0"; - sha256 = "0l89mmsl09ph412l8f9xjlyx8yp5g69ffmajynxcqvj501n21s9z"; + version = "0.27.0"; + sha256 = "1h6nri73s5ibzidhwrkxffldardx6khq9kvhmqklm06cilwr56xi"; libraryHaskellDepends = [ aeson base bytestring directory relude tasty tasty-hunit text unordered-containers @@ -195870,23 +195370,6 @@ self: { license = lib.licenses.mit; }) {}; - "morpheus-graphql-tests_0_26_0" = callPackage - ({ mkDerivation, aeson, base, bytestring, directory, relude, tasty - , tasty-hunit, text, unordered-containers - }: - mkDerivation { - pname = "morpheus-graphql-tests"; - version = "0.26.0"; - sha256 = "0dyza53pp9s16y8mlpm63b9ds396lqf8wsj2qaymyy18iakcfb9m"; - libraryHaskellDepends = [ - aeson base bytestring directory relude tasty tasty-hunit text - unordered-containers - ]; - description = "Morpheus GraphQL Test"; - license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - }) {}; - "morphisms" = callPackage ({ mkDerivation }: mkDerivation { @@ -196005,6 +195488,7 @@ self: { license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; mainProgram = "mortred"; + broken = true; }) {}; "mosaico-lib" = callPackage @@ -196024,7 +195508,6 @@ self: { description = "Generación interactiva de mosaicos"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mosquitto-hs" = callPackage @@ -196114,9 +195597,7 @@ self: { testHaskellDepends = [ base indexed indexed-extras row-types ]; description = "Type-safe effectful state machines in Haskell"; license = lib.licenses.mpl20; - hydraPlatforms = lib.platforms.none; mainProgram = "example-door"; - broken = true; }) {}; "motor-diagrams" = callPackage @@ -196155,6 +195636,7 @@ self: { description = "Reflect on Motor FSM typeclasses to obtain runtime representations"; license = lib.licenses.mpl20; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "mount" = callPackage @@ -196288,8 +195770,6 @@ self: { libraryHaskellDepends = [ base ghc-prim primitive ]; description = "Efficient effect handlers based on evidence-passing semantics"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mpg123-bindings" = callPackage @@ -196404,8 +195884,8 @@ self: { ({ mkDerivation, base, containers, extra, numeric-prelude, text }: mkDerivation { pname = "mpolynomials"; - version = "0.1.0.0"; - sha256 = "0p2x8hr5yydqnm5znh7ghfyis5s4vapk10q8qs76il7vb68np352"; + version = "0.1.1.0"; + sha256 = "05nqmxh1i7q89iswl47c20z0gzqg4kznnmp8h6qyrj316l14xnlc"; libraryHaskellDepends = [ base containers extra numeric-prelude text ]; @@ -196697,8 +196177,6 @@ self: { testHaskellDepends = [ base hspec ]; description = "A simple way to read environment variables in Haskell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mrifk" = callPackage @@ -196834,6 +196312,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "A Haskell implementation of MessagePack"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "msgpack-binary" = callPackage @@ -196863,7 +196342,6 @@ self: { description = "A Haskell implementation of MessagePack"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "msgpack-idl" = callPackage @@ -196915,7 +196393,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "msgpack-parser"; - broken = true; }) {}; "msgpack-rpc" = callPackage @@ -196977,6 +196454,7 @@ self: { testHaskellDepends = [ base hspec ]; description = "A Haskell implementation of MessagePack"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "msgpack-types" = callPackage @@ -197001,6 +196479,8 @@ self: { testToolDepends = [ hspec-discover ]; description = "A Haskell implementation of MessagePack"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "msh" = callPackage @@ -197034,7 +196514,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "msi-kb-backlit"; - broken = true; }) {}; "mssql-simple" = callPackage @@ -197055,6 +196534,8 @@ self: { ]; description = "SQL Server client library implemented in Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "mstate" = callPackage @@ -197691,8 +197172,6 @@ self: { ]; description = "A simple document-oriented database"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mueval" = callPackage @@ -198085,6 +197564,8 @@ self: { pname = "multipart"; version = "0.2.1"; sha256 = "0p6n4knxpjv70nbl6cmd6x7gkdjsjqp4ya7fz00bfrqp7jvhlivn"; + revision = "1"; + editedCabalFile = "03gaapwnvn843hpm5qwdci9df1wf383msd42p8w9ghilpfjj4qy9"; libraryHaskellDepends = [ base bytestring parsec stringsearch ]; description = "Parsers for the HTTP multipart format"; license = lib.licenses.bsd3; @@ -198201,6 +197682,8 @@ self: { ]; description = "Generalized system for reading and writing to distributed systems that have primary/replica topologies"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "multipool-persistent" = callPackage @@ -198221,6 +197704,7 @@ self: { ]; description = "Read and write from appropriate persistent sql instances in replicated environments"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "multipool-persistent-postgresql" = callPackage @@ -198246,7 +197730,6 @@ self: { description = "Read and write appropriately from both master and replicated postgresql instances"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "multipool-postgresql-simple" = callPackage @@ -198267,6 +197750,7 @@ self: { unliftio-core unordered-containers ]; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "multiprocess" = callPackage @@ -198380,6 +197864,8 @@ self: { testHaskellDepends = [ base hspec transformers ]; description = "like mtl's ReaderT / WriterT / StateT, but more than one contained value/type"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "multivariant" = callPackage @@ -198412,7 +197898,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "example"; - broken = true; }) {}; "multivector" = callPackage @@ -198500,6 +197985,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "mur"; + broken = true; }) {}; "murmur-hash" = callPackage @@ -199013,6 +198499,8 @@ self: { ]; description = "Automatic piecewise-mutable references for your types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "mutable-containers" = callPackage @@ -199066,8 +198554,6 @@ self: { benchmarkHaskellDepends = [ base extra primitive ]; description = "Interoperate mutable references with regular lens"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "mute-unmute" = callPackage @@ -199467,6 +198953,7 @@ self: { ]; description = "Binding to mybitcoin.com's Shopping Cart Interface."; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; }) {}; "myo" = callPackage @@ -199723,7 +199210,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "mywatch"; - broken = true; }) {}; "mywork" = callPackage @@ -199749,6 +199235,7 @@ self: { license = lib.licenses.isc; hydraPlatforms = lib.platforms.none; mainProgram = "mywork"; + broken = true; }) {}; "myxine-client" = callPackage @@ -200157,6 +199644,21 @@ self: { broken = true; }) {}; + "named-text" = callPackage + ({ mkDerivation, base, deepseq, hashable, prettyprinter, sayable + , text + }: + mkDerivation { + pname = "named-text"; + version = "1.0.1.0"; + sha256 = "05v79ry6rlrpfvf36nkzf6l4xm2kzgpdrvaivg878nxcrni1gr78"; + libraryHaskellDepends = [ + base deepseq hashable prettyprinter sayable text + ]; + description = "A parameterized named text type and associated functionality"; + license = lib.licenses.isc; + }) {}; + "namelist" = callPackage ({ mkDerivation, base, case-insensitive, data-default-class, parsec , QuickCheck, tasty, tasty-hunit, tasty-quickcheck @@ -200227,6 +199729,8 @@ self: { ]; description = "A threadsafe binding to glibc's crypt_r function"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) libxcrypt;}; "nano-erl" = callPackage @@ -201039,6 +200543,7 @@ self: { license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; mainProgram = "neko-obfs"; + broken = true; }) {}; "nemesis" = callPackage @@ -201549,7 +201054,6 @@ self: { description = "The NetCore compiler and runtime system for OpenFlow networks"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "netease-fm" = callPackage @@ -201607,6 +201111,7 @@ self: { ]; description = "Helper modules for comfort-array wrappers to BLAS and LAPACK"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "netlib-ffi" = callPackage @@ -201848,7 +201353,6 @@ self: { description = "OpenFlow protocol messages, binary formats, and servers"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "netwire" = callPackage @@ -202313,9 +201817,7 @@ self: { ]; description = "Domain Name System data structures"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "hs-network-dns-examples-resolver"; - broken = true; }) {}; "network-enumerator" = callPackage @@ -202436,7 +201938,9 @@ self: { doHaddock = false; description = "network-manager tui"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "nmt"; + broken = true; }) {}; "network-messagepack-rpc" = callPackage @@ -202473,6 +201977,8 @@ self: { ]; description = "WebSocket backend for MessagePack RPC"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "network-metrics" = callPackage @@ -202830,23 +202336,6 @@ self: { }) {}; "network-transport" = callPackage - ({ mkDerivation, base, binary, bytestring, deepseq, hashable - , transformers - }: - mkDerivation { - pname = "network-transport"; - version = "0.5.4"; - sha256 = "0izcqi3zl7ynav0qqrrfmiax8vziqwrhflprddhjj6x6nkzhp1sv"; - revision = "1"; - editedCabalFile = "03parnmzh2mffs6fadqbf4lw1d5bsmvr347rzamp230s303nr6yc"; - libraryHaskellDepends = [ - base binary bytestring deepseq hashable transformers - ]; - description = "Network abstraction layer"; - license = lib.licenses.bsd3; - }) {}; - - "network-transport_0_5_6" = callPackage ({ mkDerivation, base, binary, bytestring, deepseq, hashable , transformers }: @@ -202859,7 +202348,6 @@ self: { ]; description = "Network abstraction layer"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "network-transport-amqp" = callPackage @@ -203104,22 +202592,6 @@ self: { }) {}; "network-wait" = callPackage - ({ mkDerivation, base, exceptions, network, network-simple, retry - , tasty, tasty-hunit - }: - mkDerivation { - pname = "network-wait"; - version = "0.1.2.0"; - sha256 = "1fgcp2didz7zp4jpkc9zap94sbd6ny8nyrx6nwnfai2ssw5rxpfq"; - libraryHaskellDepends = [ base exceptions network retry ]; - testHaskellDepends = [ - base exceptions network network-simple retry tasty tasty-hunit - ]; - description = "Lightweight library for waiting on networked services to become available"; - license = lib.licenses.mit; - }) {}; - - "network-wait_0_2_0_0" = callPackage ({ mkDerivation, base, exceptions, network, network-simple, retry , tasty, tasty-hunit }: @@ -203133,7 +202605,6 @@ self: { ]; description = "Lightweight library for waiting on networked services to become available"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "network-websocket" = callPackage @@ -203308,8 +202779,8 @@ self: { doHaddock = false; description = "Future-proof system for plain-text notes"; license = lib.licenses.agpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "neuron"; - maintainers = [ lib.maintainers.maralorn ]; }) {}; "newbase60" = callPackage @@ -203650,6 +203121,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "ngrams-loader"; + broken = true; }) {}; "ngx-export" = callPackage @@ -203706,8 +203178,8 @@ self: { }: mkDerivation { pname = "ngx-export-log"; - version = "1.5.1"; - sha256 = "03wr3v7x26c0cm01rclc5fkj2a66pamcjikx8wgariljdzfzr7qs"; + version = "1.5.2"; + sha256 = "0l77znlaps924a7nqzkhc4w971y4q9lm3mr0m6xa3n7bdbmgy99i"; libraryHaskellDepends = [ base bytestring ngx-export ngx-export-tools template-haskell ]; @@ -203957,6 +203429,8 @@ self: { libraryHaskellDepends = [ base bytestring http-conduit xml ]; description = "Haskell interface to the nist random beacon"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "nitro" = callPackage @@ -204085,8 +203559,8 @@ self: { pname = "nix-diff"; version = "1.0.18"; sha256 = "0pqz207zywcs38w8yaq5qgbsps7vx0zf2wykaxq9zs43d74ygh64"; - revision = "1"; - editedCabalFile = "12fb817s9dq2hf8v63c1b92zpxkil633swzf41739q1vlwqg39xh"; + revision = "2"; + editedCabalFile = "06zc80l50zaa7xp7svdfj5xvflim42g4j4jdkcbx1m5irr9384s1"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -204300,26 +203774,25 @@ self: { "nix-tree" = callPackage ({ mkDerivation, aeson, async, base, brick, bytestring, clock - , containers, deepseq, directory, filepath, hashable, hedgehog - , hrfsize, optparse-applicative, relude, terminal-progress-bar - , text, transformers, typed-process, unordered-containers, vty + , containers, directory, filepath, hedgehog, hrfsize, microlens + , optparse-applicative, relude, terminal-progress-bar, text + , typed-process, unordered-containers, vty }: mkDerivation { pname = "nix-tree"; - version = "0.2.1"; - sha256 = "1ca4a6mmbb8kvja3ipiifj7kfxayq9ik3ip10m6nkf99a56060jw"; + version = "0.3.1"; + sha256 = "13prwlkiy6cjp49clx3fw3rbhp7p1p6cx9lya06d58rqys782qkr"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - aeson async base brick bytestring clock containers deepseq - directory filepath hashable hrfsize optparse-applicative relude - terminal-progress-bar text transformers typed-process - unordered-containers vty + aeson async base brick bytestring clock containers directory + filepath hrfsize microlens optparse-applicative relude + terminal-progress-bar text typed-process unordered-containers vty ]; testHaskellDepends = [ - aeson base brick bytestring clock containers deepseq directory - filepath hashable hedgehog hrfsize optparse-applicative relude text - transformers typed-process unordered-containers vty + aeson base brick bytestring clock containers directory filepath + hedgehog hrfsize microlens optparse-applicative relude text + typed-process unordered-containers vty ]; description = "Interactively browse a Nix store paths dependencies"; license = lib.licenses.bsd3; @@ -204345,7 +203818,9 @@ self: { ]; description = "Interactively browse a Nix store paths dependencies"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "nixdu"; + broken = true; }) {}; "nixfmt" = callPackage @@ -204739,6 +204214,8 @@ self: { ]; description = "A static site generator"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "nom" = callPackage @@ -204764,15 +204241,14 @@ self: { description = "Name-binding & alpha-equivalence"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "nominal" = callPackage ({ mkDerivation, base, containers }: mkDerivation { pname = "nominal"; - version = "0.2.0.0"; - sha256 = "1wd2vd0qn8ln3a5r29gikdcr4c2c2rf43p6kq3wmqm8ww30djgca"; + version = "0.3.0.0"; + sha256 = "12kryz3z7kds1cca4s414233pd160gkzidf0d1b89zj926zhd766"; libraryHaskellDepends = [ base containers ]; description = "Binders and alpha-equivalence made easy"; license = lib.licenses.gpl3Only; @@ -205018,18 +204494,6 @@ self: { }) {}; "nondeterminism" = callPackage - ({ mkDerivation, base, containers, mtl, tasty, tasty-hunit }: - mkDerivation { - pname = "nondeterminism"; - version = "1.4"; - sha256 = "1ibxnkbr1lqjpr00cmw1p94cypcplxr0yr6q3aspl0vp08xwjdrh"; - libraryHaskellDepends = [ base containers mtl ]; - testHaskellDepends = [ base tasty tasty-hunit ]; - description = "A monad and monad transformer for nondeterministic computations"; - license = "LGPL"; - }) {}; - - "nondeterminism_1_5" = callPackage ({ mkDerivation, base, containers, mtl, tasty, tasty-hunit }: mkDerivation { pname = "nondeterminism"; @@ -205039,7 +204503,6 @@ self: { testHaskellDepends = [ base tasty tasty-hunit ]; description = "A monad and monad transformer for nondeterministic computations"; license = "LGPL"; - hydraPlatforms = lib.platforms.none; }) {}; "nonempty-alternative" = callPackage @@ -205359,6 +204822,7 @@ self: { ]; description = "Painless 3D graphics, no affiliation with gloss"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "not-gloss-examples" = callPackage @@ -205377,7 +204841,6 @@ self: { description = "examples for not-gloss"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "not-in-base" = callPackage @@ -205503,6 +204966,7 @@ self: { license = "LGPL"; hydraPlatforms = lib.platforms.none; mainProgram = "notmuch-test"; + broken = true; }) {inherit (pkgs) notmuch;}; "notmuch-web" = callPackage @@ -205701,23 +205165,23 @@ self: { }) {}; "nri-http" = callPackage - ({ mkDerivation, aeson, base, bytestring, conduit, http-client - , http-client-tls, http-types, mime-types, network-uri + ({ mkDerivation, aeson, base, bytestring, case-insensitive, conduit + , http-client, http-client-tls, http-types, mime-types, network-uri , nri-observability, nri-prelude, safe-exceptions, text, wai, warp }: mkDerivation { pname = "nri-http"; - version = "0.1.0.4"; - sha256 = "1zf55k4c4zlx2229xxs2hfl7y5c0fb3ab7vrms08imfp0hblj91x"; + version = "0.3.0.0"; + sha256 = "1b3zaw96np1x87839fi47shzb79v6rs6hvr116fjb7kvayrz7xpn"; libraryHaskellDepends = [ - aeson base bytestring conduit http-client http-client-tls - http-types mime-types network-uri nri-observability nri-prelude - safe-exceptions text + aeson base bytestring case-insensitive conduit http-client + http-client-tls http-types mime-types network-uri nri-observability + nri-prelude safe-exceptions text ]; testHaskellDepends = [ - aeson base bytestring conduit http-client http-client-tls - http-types mime-types network-uri nri-observability nri-prelude - safe-exceptions text wai warp + aeson base bytestring case-insensitive conduit http-client + http-client-tls http-types mime-types network-uri nri-observability + nri-prelude safe-exceptions text wai warp ]; description = "Make Elm style HTTP requests"; license = lib.licenses.bsd3; @@ -206135,8 +205599,6 @@ self: { libraryHaskellDepends = [ base call-stack semigroups ]; description = "A sequence of semigroups, for composing stuff in multiple spatial directions"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "numbering" = callPackage @@ -206207,7 +205669,6 @@ self: { description = "Convert numbers to number words"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "numeric-domains" = callPackage @@ -206303,7 +205764,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "Kepler"; - broken = true; }) {}; "numeric-prelude" = callPackage @@ -206588,6 +206048,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Type-level (low cardinality) integers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "numtype-dk" = callPackage @@ -206610,6 +206072,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Type-level (low cardinality) integers, implemented using type families"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "nurbs" = callPackage @@ -206705,8 +206169,8 @@ self: { }: mkDerivation { pname = "nvim-hs"; - version = "2.2.0.3"; - sha256 = "0sbppnphnbygxjns373hyb3hvbwzlv4sq104682bcajd07x6vhmw"; + version = "2.3.1.0"; + sha256 = "1vgdvcvjyl7dxmvmcljb130gwp806769hks00fj1sqfi953lm9bf"; libraryHaskellDepends = [ base bytestring cereal cereal-conduit conduit containers data-default deepseq foreign-store hslogger megaparsec messagepack @@ -206731,7 +206195,7 @@ self: { license = lib.licenses.asl20; }) {}; - "nvim-hs_2_3_0_0" = callPackage + "nvim-hs_2_3_2_0" = callPackage ({ mkDerivation, base, bytestring, cereal, cereal-conduit, conduit , containers, data-default, deepseq, foreign-store, hslogger, hspec , hspec-discover, HUnit, megaparsec, messagepack, mtl, network @@ -206744,8 +206208,8 @@ self: { }: mkDerivation { pname = "nvim-hs"; - version = "2.3.0.0"; - sha256 = "0jc0wzxfkah115j0y4pa4hvr4wziba4q319x5ddgb9jbc52rqh7r"; + version = "2.3.2.0"; + sha256 = "1szvh65sbxk81321ml0b1iib5ziiks2l8liwkgs4z47pmb14cps9"; libraryHaskellDepends = [ base bytestring cereal cereal-conduit conduit containers data-default deepseq foreign-store hslogger megaparsec messagepack @@ -206803,6 +206267,31 @@ self: { pname = "nvim-hs-ghcid"; version = "2.0.0.0"; sha256 = "0i9wc6mgxxzymw1smjvin70i4ynqsn2k3ig36pxmbb6qd0ci0hwg"; + revision = "1"; + editedCabalFile = "0na6lv57jdrpq1zkp3dhlpzh0wrr9632h7izw7jf8622x51qlh4r"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring containers directory filepath ghcid nvim-hs + nvim-hs-contrib resourcet transformers unliftio yaml + ]; + executableHaskellDepends = [ base nvim-hs ]; + description = "Neovim plugin that runs ghcid to update the quickfix list"; + license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + mainProgram = "nvim-hs-ghcid"; + broken = true; + }) {}; + + "nvim-hs-ghcid_2_0_1_0" = callPackage + ({ mkDerivation, base, bytestring, containers, directory, filepath + , ghcid, nvim-hs, nvim-hs-contrib, resourcet, transformers + , unliftio, yaml + }: + mkDerivation { + pname = "nvim-hs-ghcid"; + version = "2.0.1.0"; + sha256 = "0vx1hj5x6xzxy305qm7ax74b85440hl7wbr39501xz1yanvz5i1i"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -206980,29 +206469,6 @@ self: { }) {}; "o-clock" = callPackage - ({ mkDerivation, base, doctest, Glob, hedgehog, hspec-expectations - , markdown-unlit, tasty, tasty-hedgehog, tasty-hunit-compat - , type-spec - }: - mkDerivation { - pname = "o-clock"; - version = "1.2.1.1"; - sha256 = "0rq9bn9lxsmgjw6w55r3c15y1pjq36vi246qldr53csr0pa9ggfy"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ - base doctest Glob hedgehog hspec-expectations markdown-unlit tasty - tasty-hedgehog tasty-hunit-compat type-spec - ]; - testToolDepends = [ doctest markdown-unlit ]; - description = "Type-safe time library"; - license = lib.licenses.mpl20; - mainProgram = "play-o-clock"; - }) {}; - - "o-clock_1_3_0" = callPackage ({ mkDerivation, base, doctest, Glob, hedgehog, hspec-expectations , markdown-unlit, tasty, tasty-hedgehog, tasty-hunit-compat , type-spec @@ -207024,7 +206490,6 @@ self: { testToolDepends = [ doctest markdown-unlit ]; description = "Type-safe time library"; license = lib.licenses.mpl20; - hydraPlatforms = lib.platforms.none; mainProgram = "play-o-clock"; }) {}; @@ -207051,6 +206516,7 @@ self: { description = "Client to the OANDA REST API"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "oasis-xrd" = callPackage @@ -207138,7 +206604,6 @@ self: { description = "OAuth2 jwt-bearer client flow as per rfc7523"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "oauthenticated" = callPackage @@ -207191,6 +206656,7 @@ self: { description = "Communicate to OBD interfaces over ELM327"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "obdd" = callPackage @@ -207692,6 +207158,180 @@ self: { license = lib.licenses.bsd3; }) {}; + "ogma-cli" = callPackage + ({ mkDerivation, base, HUnit, ogma-core, optparse-applicative + , process, test-framework, test-framework-hunit, unix + }: + mkDerivation { + pname = "ogma-cli"; + version = "1.0.6"; + sha256 = "1ldjswdyxckxrmypmx027aw90b93r41izqw4qj1szp6p1mjbx3pn"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ base ogma-core optparse-applicative ]; + testHaskellDepends = [ + base HUnit process test-framework test-framework-hunit unix + ]; + description = "Ogma: Helper tool to interoperate between Copilot and other languages"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + mainProgram = "ogma"; + }) {}; + + "ogma-core" = callPackage + ({ mkDerivation, aeson, base, filepath, HUnit, IfElse, ogma-extra + , ogma-language-c, ogma-language-cocospec, ogma-language-copilot + , ogma-language-fret-cs, ogma-language-fret-reqs, ogma-language-smv + , QuickCheck, test-framework, test-framework-hunit + , test-framework-quickcheck2 + }: + mkDerivation { + pname = "ogma-core"; + version = "1.0.6"; + sha256 = "09svwdsn16hfa7rxf4lbpj4i08ay5rrxk6dlmic0gk7yc24mx47c"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + aeson base filepath IfElse ogma-extra ogma-language-c + ogma-language-cocospec ogma-language-copilot ogma-language-fret-cs + ogma-language-fret-reqs ogma-language-smv + ]; + testHaskellDepends = [ + base HUnit QuickCheck test-framework test-framework-hunit + test-framework-quickcheck2 + ]; + description = "Ogma: Helper tool to interoperate between Copilot and other languages"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + }) {}; + + "ogma-extra" = callPackage + ({ mkDerivation, base, bytestring, Cabal, directory, filepath + , QuickCheck, test-framework, test-framework-quickcheck2 + }: + mkDerivation { + pname = "ogma-extra"; + version = "1.0.6"; + sha256 = "1wk4374k09wwxhb9ki5pcl6igw6d83bxffrdv7qf8xgm051vna2y"; + libraryHaskellDepends = [ + base bytestring Cabal directory filepath + ]; + testHaskellDepends = [ + base QuickCheck test-framework test-framework-quickcheck2 + ]; + description = "Ogma: Helper tool to interoperate between Copilot and other languages"; + license = "unknown"; + }) {}; + + "ogma-language-c" = callPackage + ({ mkDerivation, array, base, BNFC, Cabal, process, QuickCheck + , test-framework, test-framework-quickcheck2 + }: + mkDerivation { + pname = "ogma-language-c"; + version = "1.0.6"; + sha256 = "1c30gcnrhqd4jg1rsv4s8vi0lvpslc3rn8zwkffrwxhll0qv7dma"; + setupHaskellDepends = [ base BNFC Cabal process ]; + libraryHaskellDepends = [ array base ]; + testHaskellDepends = [ + base QuickCheck test-framework test-framework-quickcheck2 + ]; + description = "Ogma: Runtime Monitor translator: C Language Frontend"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "ogma-language-cocospec" = callPackage + ({ mkDerivation, array, base, BNFC, Cabal, process, QuickCheck + , test-framework, test-framework-quickcheck2 + }: + mkDerivation { + pname = "ogma-language-cocospec"; + version = "1.0.6"; + sha256 = "0lnqg0mls8j7k1w735ygl1gaqzy9hz0q71sabirdgqf4p446rm21"; + setupHaskellDepends = [ base BNFC Cabal process ]; + libraryHaskellDepends = [ array base ]; + testHaskellDepends = [ + base QuickCheck test-framework test-framework-quickcheck2 + ]; + description = "Ogma: Runtime Monitor translator: CoCoSpec Language Frontend"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "ogma-language-copilot" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "ogma-language-copilot"; + version = "1.0.6"; + sha256 = "0ffbnxbsxl3mcmnys8zhagqwlsxk7da6w2szf9p0sx7032j8j20d"; + libraryHaskellDepends = [ base ]; + description = "Ogma: Runtime Monitor translator: Copilot Language Endpoints"; + license = "unknown"; + }) {}; + + "ogma-language-fret-cs" = callPackage + ({ mkDerivation, aeson, base, ogma-extra, ogma-language-cocospec + , ogma-language-smv, QuickCheck, test-framework + , test-framework-quickcheck2 + }: + mkDerivation { + pname = "ogma-language-fret-cs"; + version = "1.0.6"; + sha256 = "1jb2xqxnr2wp2fwijlzv3lr8a1vwarbk9sy63881v6ygk7jlyz8f"; + libraryHaskellDepends = [ + aeson base ogma-language-cocospec ogma-language-smv + ]; + testHaskellDepends = [ + aeson base ogma-extra QuickCheck test-framework + test-framework-quickcheck2 + ]; + description = "Ogma: Runtime Monitor translator: FRET Component Specification Frontend"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + }) {}; + + "ogma-language-fret-reqs" = callPackage + ({ mkDerivation, aeson, base, ogma-extra, ogma-language-cocospec + , ogma-language-smv, QuickCheck, test-framework + , test-framework-quickcheck2, text + }: + mkDerivation { + pname = "ogma-language-fret-reqs"; + version = "1.0.6"; + sha256 = "0dlscsf9i877qjijb5ygw32igyi42s02wj7ggav4h1dy36dm0bf7"; + libraryHaskellDepends = [ + aeson base ogma-language-cocospec ogma-language-smv text + ]; + testHaskellDepends = [ + aeson base ogma-extra QuickCheck test-framework + test-framework-quickcheck2 + ]; + description = "Ogma: Runtime Monitor translator: FRET Component Requirement DB Frontend"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + }) {}; + + "ogma-language-smv" = callPackage + ({ mkDerivation, array, base, BNFC, Cabal, process, QuickCheck + , test-framework, test-framework-quickcheck2 + }: + mkDerivation { + pname = "ogma-language-smv"; + version = "1.0.6"; + sha256 = "1cyjymfil3zyji8lj607r900icj8789nq1zx0civm29mz6ryrj8a"; + setupHaskellDepends = [ base BNFC Cabal process ]; + libraryHaskellDepends = [ array base ]; + testHaskellDepends = [ + base QuickCheck test-framework test-framework-quickcheck2 + ]; + description = "Ogma: Runtime Monitor translator: SMV Language Frontend"; + license = "unknown"; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "ogmarkup" = callPackage ({ mkDerivation, base, hspec, hspec-megaparsec, megaparsec, mtl , shakespeare, text @@ -207733,6 +207373,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "cmdoh"; + broken = true; }) {}; "oi" = callPackage @@ -207760,8 +207401,8 @@ self: { }: mkDerivation { pname = "oidc-client"; - version = "0.7.0.0"; - sha256 = "0cc1psif3s6qmina5sx49clvpg54b6sapcvq4ax3r0afsp4hdl3m"; + version = "0.7.0.1"; + sha256 = "161dcwnnis9ddxr76fl107dfif1jw6gpbd1ckhh4rclq63vh9inb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -207813,6 +207454,8 @@ self: { ]; description = "A microframework based on monadic parsing"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "old-locale" = callPackage @@ -207964,7 +207607,6 @@ self: { description = "Concurrency utilities"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "om-http" = callPackage @@ -207985,7 +207627,6 @@ self: { description = "Http utilities"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "om-http-logging" = callPackage @@ -208073,6 +207714,24 @@ self: { ]; description = "Opinionated logging utilities"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + + "om-plugin-imports" = callPackage + ({ mkDerivation, base, containers, ghc }: + mkDerivation { + pname = "om-plugin-imports"; + version = "0.1.0.2"; + sha256 = "0r2pn8fcqisjzxv415vj8ldvxz17kv7hqz9z6h4rjg21h6ckqkva"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base containers ghc ]; + executableHaskellDepends = [ base containers ghc ]; + description = "Plugin-based import warnings"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "om-import-warnings-test"; + broken = true; }) {}; "om-show" = callPackage @@ -208084,6 +207743,8 @@ self: { libraryHaskellDepends = [ aeson base text ]; description = "Utilities for showing string-like things"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "om-socket" = callPackage @@ -208108,6 +207769,7 @@ self: { ]; description = "Socket utilities"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "om-time" = callPackage @@ -208121,6 +207783,8 @@ self: { ]; description = "Misc. time utilites"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "omaketex" = callPackage @@ -208321,25 +207985,6 @@ self: { }) {}; "one-liner" = callPackage - ({ mkDerivation, base, bifunctors, contravariant, ghc-prim, HUnit - , linear-base, profunctors, tagged, transformers - }: - mkDerivation { - pname = "one-liner"; - version = "2.0"; - sha256 = "0al9wavxx23xbalqw0cdlhq01kx8kyhg33fipwmn5617z3ddir6v"; - revision = "1"; - editedCabalFile = "19iwyb3jx7bwybmmmamyzf4lxiwik7wdl8k1crikzmxn016pnybz"; - libraryHaskellDepends = [ - base bifunctors contravariant ghc-prim linear-base profunctors - tagged transformers - ]; - testHaskellDepends = [ base contravariant HUnit ]; - description = "Constraint-based generics"; - license = lib.licenses.bsd3; - }) {}; - - "one-liner_2_1" = callPackage ({ mkDerivation, base, bifunctors, contravariant, ghc-prim, HUnit , linear-base, profunctors, tagged, transformers }: @@ -208354,7 +207999,6 @@ self: { testHaskellDepends = [ base contravariant HUnit ]; description = "Constraint-based generics"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "one-liner-instances" = callPackage @@ -208516,35 +208160,6 @@ self: { }) {}; "opaleye" = callPackage - ({ mkDerivation, aeson, base, base16-bytestring, bytestring - , case-insensitive, containers, contravariant, dotenv, hspec - , hspec-discover, multiset, postgresql-simple, pretty - , product-profunctors, profunctors, QuickCheck, scientific - , semigroups, text, time, time-compat, time-locale-compat - , transformers, uuid, void - }: - mkDerivation { - pname = "opaleye"; - version = "0.9.3.2"; - sha256 = "0lkdi2svbv64z4rnsfxbr7ijb3a5rmsx4c6igzql7ajrlwha49rx"; - libraryHaskellDepends = [ - aeson base base16-bytestring bytestring case-insensitive - contravariant postgresql-simple pretty product-profunctors - profunctors scientific semigroups text time-compat - time-locale-compat transformers uuid void - ]; - testHaskellDepends = [ - aeson base bytestring containers contravariant dotenv hspec - hspec-discover multiset postgresql-simple product-profunctors - profunctors QuickCheck semigroups text time time-compat - transformers uuid - ]; - testToolDepends = [ hspec-discover ]; - description = "An SQL-generating DSL targeting PostgreSQL"; - license = lib.licenses.bsd3; - }) {}; - - "opaleye_0_9_6_1" = callPackage ({ mkDerivation, aeson, base, base16-bytestring, bytestring , case-insensitive, containers, contravariant, dotenv, hspec , hspec-discover, multiset, postgresql-simple, pretty @@ -208571,7 +208186,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "An SQL-generating DSL targeting PostgreSQL"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "opaleye-classy" = callPackage @@ -208841,7 +208455,6 @@ self: { testHaskellDepends = [ base mtl tasty tasty-hunit witness ]; description = "open witnesses"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; }) {}; "openai-hs" = callPackage @@ -208866,6 +208479,7 @@ self: { description = "Unofficial OpenAI client"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "openai-servant" = callPackage @@ -208882,8 +208496,6 @@ self: { ]; description = "Unofficial OpenAI servant types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "openal-ffi" = callPackage @@ -208987,6 +208599,43 @@ self: { mainProgram = "example"; }) {}; + "openapi3_3_2_3" = callPackage + ({ mkDerivation, aeson, aeson-pretty, base, base-compat-batteries + , bytestring, Cabal, cabal-doctest, containers, cookie, doctest + , generics-sop, Glob, hashable, hspec, hspec-discover, http-media + , HUnit, insert-ordered-containers, lens, mtl, optics-core + , optics-th, QuickCheck, quickcheck-instances, scientific + , template-haskell, text, time, transformers, unordered-containers + , utf8-string, uuid-types, vector + }: + mkDerivation { + pname = "openapi3"; + version = "3.2.3"; + sha256 = "0svkzafxfmhjakv4h57p5sw59ksbxz1hn1y3fbg6zimwal4mgr6l"; + isLibrary = true; + isExecutable = true; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + aeson aeson-pretty base base-compat-batteries bytestring containers + cookie generics-sop hashable http-media insert-ordered-containers + lens mtl optics-core optics-th QuickCheck scientific + template-haskell text time transformers unordered-containers + uuid-types vector + ]; + executableHaskellDepends = [ aeson base lens text ]; + testHaskellDepends = [ + aeson base base-compat-batteries bytestring containers doctest Glob + hashable hspec HUnit insert-ordered-containers lens mtl QuickCheck + quickcheck-instances template-haskell text time + unordered-containers utf8-string vector + ]; + testToolDepends = [ hspec-discover ]; + description = "OpenAPI 3.0 data model"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "example"; + }) {}; + "openapi3-code-generator" = callPackage ({ mkDerivation, aeson, autodocodec, autodocodec-yaml, base , bytestring, containers, directory, filepath, genvalidity @@ -209026,6 +208675,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "openapi3-code-generator-exe"; + broken = true; }) {}; "opencc" = callPackage @@ -209040,6 +208690,8 @@ self: { testHaskellDepends = [ base bytestring mtl text transformers ]; description = "OpenCC bindings"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) opencc;}; "opench-meteo" = callPackage @@ -209334,7 +208986,6 @@ self: { description = "Implementation of the OpenPGP message format"; license = "unknown"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "openpgp-Crypto" = callPackage @@ -209518,20 +209169,6 @@ self: { }) {}; "opentelemetry" = callPackage - ({ mkDerivation, base, bytestring, exceptions, ghc-trace-events - , hashable - }: - mkDerivation { - pname = "opentelemetry"; - version = "0.7.0"; - sha256 = "10k9if33ydjc099mgjvgglp6fcmrz0zxpv6khwkhra6lcz35mylv"; - libraryHaskellDepends = [ - base bytestring exceptions ghc-trace-events hashable - ]; - license = lib.licenses.asl20; - }) {}; - - "opentelemetry_0_8_0" = callPackage ({ mkDerivation, base, bytestring, exceptions, ghc-trace-events , hashable }: @@ -209543,46 +209180,9 @@ self: { base bytestring exceptions ghc-trace-events hashable ]; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "opentelemetry-extra" = callPackage - ({ mkDerivation, async, base, binary, bytestring, clock, containers - , directory, exceptions, filepath, generic-arbitrary, ghc-events - , hashable, hashtables, http-client, http-client-tls, http-types - , hvega, jsonifier, opentelemetry, process, QuickCheck - , quickcheck-instances, random, scientific, splitmix, stm, tasty - , tasty-bench, tasty-discover, tasty-hunit, tasty-quickcheck, text - , text-show, typed-process, unordered-containers - }: - mkDerivation { - pname = "opentelemetry-extra"; - version = "0.7.0"; - sha256 = "11lwhm3rpajmch7kjb4qwngram5ka8fbd3c0mxszlf4a9dlqag32"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - async base binary bytestring clock containers directory exceptions - filepath ghc-events hashable http-client http-client-tls http-types - jsonifier opentelemetry random scientific splitmix stm text - text-show unordered-containers - ]; - executableHaskellDepends = [ - async base bytestring clock containers directory exceptions - filepath hashtables http-client http-client-tls hvega opentelemetry - process text typed-process - ]; - testHaskellDepends = [ - base bytestring generic-arbitrary ghc-events hashable opentelemetry - QuickCheck quickcheck-instances splitmix tasty tasty-discover - tasty-hunit tasty-quickcheck text text-show unordered-containers - ]; - testToolDepends = [ tasty-discover ]; - benchmarkHaskellDepends = [ base opentelemetry tasty-bench ]; - license = lib.licenses.asl20; - }) {}; - - "opentelemetry-extra_0_8_0" = callPackage ({ mkDerivation, async, base, binary, bytestring, clock, containers , directory, exceptions, filepath, generic-arbitrary, ghc-events , hashable, hashtables, http-client, http-client-tls, http-types @@ -209617,6 +209217,7 @@ self: { benchmarkHaskellDepends = [ base opentelemetry tasty-bench ]; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "opentelemetry-http-client" = callPackage @@ -209635,33 +209236,6 @@ self: { }) {}; "opentelemetry-lightstep" = callPackage - ({ mkDerivation, async, base, bytestring, clock, containers - , exceptions, filepath, ghc-events, http-client, http-client-tls - , http-types, network, opentelemetry, opentelemetry-extra - , scientific, splitmix, stm, text, typed-process - , unordered-containers - }: - mkDerivation { - pname = "opentelemetry-lightstep"; - version = "0.7.0"; - sha256 = "1yd6gzhwwmjjh41ipz2kifzpn7hha9nli3war2rqdjvhj349lrw8"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - async base bytestring exceptions http-client http-client-tls - http-types network opentelemetry opentelemetry-extra scientific stm - text unordered-containers - ]; - executableHaskellDepends = [ - async base bytestring clock containers exceptions filepath - ghc-events http-client http-types opentelemetry opentelemetry-extra - splitmix text typed-process unordered-containers - ]; - license = lib.licenses.asl20; - mainProgram = "eventlog-to-lightstep"; - }) {}; - - "opentelemetry-lightstep_0_8_0" = callPackage ({ mkDerivation, async, base, bytestring, clock, containers , exceptions, filepath, ghc-events, http-client, http-client-tls , http-types, network, opentelemetry, opentelemetry-extra @@ -209690,20 +209264,6 @@ self: { }) {}; "opentelemetry-wai" = callPackage - ({ mkDerivation, base, bytestring, http-types, opentelemetry, text - , wai - }: - mkDerivation { - pname = "opentelemetry-wai"; - version = "0.7.0"; - sha256 = "09mh8kfh49vx2gascwwmzs4s649sm5i90nsifp76kjvg1nvqhd1m"; - libraryHaskellDepends = [ - base bytestring http-types opentelemetry text wai - ]; - license = lib.licenses.asl20; - }) {}; - - "opentelemetry-wai_0_8_0" = callPackage ({ mkDerivation, base, bytestring, http-types, opentelemetry, text , wai }: @@ -209715,7 +209275,6 @@ self: { base bytestring http-types opentelemetry text wai ]; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "opentheory" = callPackage @@ -209951,7 +209510,6 @@ self: { description = "An OpenTok SDK for Haskell"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "opentracing" = callPackage @@ -210556,24 +210114,6 @@ self: { }) {}; "optparse-applicative" = callPackage - ({ mkDerivation, ansi-wl-pprint, base, process, QuickCheck - , transformers, transformers-compat - }: - mkDerivation { - pname = "optparse-applicative"; - version = "0.16.1.0"; - sha256 = "16nnrkmgd28h540f17nb017ziq4gbzgkxpdraqicaczkca1jf1b2"; - revision = "2"; - editedCabalFile = "0ccpk2nb9fvj97z00w8cmlpw4fn94ayndg4ngm2ls4hrdbnj5321"; - libraryHaskellDepends = [ - ansi-wl-pprint base process transformers transformers-compat - ]; - testHaskellDepends = [ base QuickCheck ]; - description = "Utilities and combinators for parsing command line options"; - license = lib.licenses.bsd3; - }) {}; - - "optparse-applicative_0_17_0_0" = callPackage ({ mkDerivation, ansi-wl-pprint, base, process, QuickCheck , transformers, transformers-compat }: @@ -210587,7 +210127,6 @@ self: { testHaskellDepends = [ base QuickCheck ]; description = "Utilities and combinators for parsing command line options"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "optparse-applicative-cmdline-util" = callPackage @@ -210596,6 +210135,8 @@ self: { pname = "optparse-applicative-cmdline-util"; version = "0.2.0"; sha256 = "13nr0biqhc2sd30xxn7sms4f0wl629bcahp3hmmcgf45nl38vpbh"; + revision = "1"; + editedCabalFile = "0cgqffzjzww6b6w8mqrs3nm46jbhaqhmflwyd9cis1k35yrw6npg"; libraryHaskellDepends = [ attoparsec base optparse-applicative text ]; @@ -210737,6 +210278,8 @@ self: { ]; description = "Command line option parsing library with a twice applicative interface"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "opusfile" = callPackage @@ -210772,9 +210315,7 @@ self: { ]; description = "Types and functions for Kepler orbits"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.expipiplus1 ]; - broken = true; }) {}; "orc" = callPackage @@ -211004,8 +210545,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Convert numbers to words in different languages"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ordrea" = callPackage @@ -211145,6 +210684,7 @@ self: { description = "A collection of Attoparsec combinators for parsing org-mode flavored documents"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "orgstat" = callPackage @@ -211309,37 +210849,6 @@ self: { }) {}; "ormolu" = callPackage - ({ mkDerivation, ansi-terminal, base, bytestring, Cabal, containers - , Diff, directory, dlist, exceptions, filepath, ghc-lib-parser - , gitrev, hspec, hspec-discover, mtl, optparse-applicative, path - , path-io, syb, temporary, text - }: - mkDerivation { - pname = "ormolu"; - version = "0.3.1.0"; - sha256 = "1517z6bi8ifzdmfclmqdiipi6zcnxagymf1sxr43sj2ipkglg2rs"; - revision = "1"; - editedCabalFile = "1ns76yw44hp84lrxdhl23aa2d14jjf4m6fd906672a4b4x3cr64l"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - ansi-terminal base bytestring Cabal containers Diff directory dlist - exceptions filepath ghc-lib-parser mtl syb text - ]; - executableHaskellDepends = [ - base filepath ghc-lib-parser gitrev optparse-applicative text - ]; - testHaskellDepends = [ - base containers directory filepath hspec path path-io temporary - text - ]; - testToolDepends = [ hspec-discover ]; - description = "A formatter for Haskell source code"; - license = lib.licenses.bsd3; - mainProgram = "ormolu"; - }) {}; - - "ormolu_0_5_0_1" = callPackage ({ mkDerivation, aeson, ansi-terminal, array, base, bytestring , Cabal, containers, Diff, directory, dlist, exceptions, filepath , ghc-lib-parser, gitrev, hspec, hspec-discover, hspec-megaparsec @@ -211369,6 +210878,39 @@ self: { testToolDepends = [ hspec-discover ]; description = "A formatter for Haskell source code"; license = lib.licenses.bsd3; + mainProgram = "ormolu"; + }) {}; + + "ormolu_0_5_1_0" = callPackage + ({ mkDerivation, aeson, ansi-terminal, array, base, bytestring + , Cabal-syntax, containers, Diff, directory, dlist, exceptions + , filepath, ghc-lib-parser, gitrev, hspec, hspec-discover + , hspec-megaparsec, megaparsec, MemoTrie, mtl, optparse-applicative + , path, path-io, QuickCheck, syb, template-haskell, temporary, text + , th-lift-instances + }: + mkDerivation { + pname = "ormolu"; + version = "0.5.1.0"; + sha256 = "186pa7wpsqipy1vwk1h5w3a5akjknsmmkc18x4i1fvrpigbrcbw9"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson ansi-terminal array base bytestring Cabal-syntax containers + Diff directory dlist exceptions filepath ghc-lib-parser megaparsec + MemoTrie mtl syb template-haskell text th-lift-instances + ]; + executableHaskellDepends = [ + base containers filepath ghc-lib-parser gitrev optparse-applicative + text + ]; + testHaskellDepends = [ + base containers directory filepath ghc-lib-parser hspec + hspec-megaparsec megaparsec path path-io QuickCheck temporary text + ]; + testToolDepends = [ hspec-discover ]; + description = "A formatter for Haskell source code"; + license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "ormolu"; }) {}; @@ -211708,6 +211250,7 @@ self: { ]; description = "External sorting package based on Conduit"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "SortLines"; }) {}; @@ -211732,6 +211275,8 @@ self: { ]; description = "A purely functional E-Graph library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "overhang" = callPackage @@ -211759,6 +211304,7 @@ self: { description = "Finite overloading"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "overloaded" = callPackage @@ -212135,6 +211681,8 @@ self: { ]; description = "PackStream converter for Neo4j BOLT protocol"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "packunused" = callPackage @@ -212554,66 +212102,6 @@ self: { }) {}; "pandoc" = callPackage - ({ mkDerivation, aeson, aeson-pretty, array, attoparsec, base - , base64-bytestring, binary, blaze-html, blaze-markup, bytestring - , case-insensitive, citeproc, commonmark, commonmark-extensions - , commonmark-pandoc, connection, containers, data-default, deepseq - , Diff, directory, doclayout, doctemplates, emojis, exceptions - , file-embed, filepath, Glob, haddock-library, hslua, hslua-aeson - , hslua-marshalling, hslua-module-path, hslua-module-system - , hslua-module-text, hslua-module-version, http-client - , http-client-tls, http-types, ipynb, jira-wiki-markup, JuicyPixels - , lpeg, mtl, network, network-uri, pandoc-lua-marshal, pandoc-types - , parsec, pretty, pretty-show, process, random, safe, scientific - , SHA, skylighting, skylighting-core, split, syb, tagsoup, tasty - , tasty-bench, tasty-golden, tasty-hunit, tasty-lua - , tasty-quickcheck, temporary, texmath, text, text-conversions - , time, unicode-collation, unicode-transforms, unix, xml - , xml-conduit, yaml, zip-archive, zlib - }: - mkDerivation { - pname = "pandoc"; - version = "2.17.1.1"; - sha256 = "1l8spmsyg2c5j16q7a7fd5i6kcvkyipq4jrhrv2k0ca1s4lcb7k4"; - configureFlags = [ "-f-trypandoc" ]; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson aeson-pretty array attoparsec base base64-bytestring binary - blaze-html blaze-markup bytestring case-insensitive citeproc - commonmark commonmark-extensions commonmark-pandoc connection - containers data-default deepseq directory doclayout doctemplates - emojis exceptions file-embed filepath Glob haddock-library hslua - hslua-aeson hslua-marshalling hslua-module-path hslua-module-system - hslua-module-text hslua-module-version http-client http-client-tls - http-types ipynb jira-wiki-markup JuicyPixels lpeg mtl network - network-uri pandoc-lua-marshal pandoc-types parsec pretty - pretty-show process random safe scientific SHA skylighting - skylighting-core split syb tagsoup temporary texmath text - text-conversions time unicode-collation unicode-transforms unix xml - xml-conduit yaml zip-archive zlib - ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ - base bytestring containers Diff directory doctemplates exceptions - filepath Glob hslua mtl pandoc-types process tasty tasty-golden - tasty-hunit tasty-lua tasty-quickcheck text time xml zip-archive - ]; - benchmarkHaskellDepends = [ - base bytestring deepseq mtl tasty-bench text - ]; - postInstall = '' - mkdir -p $out/share/man/man1 - mv "man/"*.1 $out/share/man/man1/ - ''; - description = "Conversion between markup formats"; - license = lib.licenses.gpl2Plus; - mainProgram = "pandoc"; - maintainers = [ lib.maintainers.peti ]; - }) {}; - - "pandoc_2_19_2" = callPackage ({ mkDerivation, aeson, aeson-pretty, array, attoparsec, base , base64, binary, blaze-html, blaze-markup, bytestring , case-insensitive, citeproc, commonmark, commonmark-extensions @@ -212671,9 +212159,10 @@ self: { ''; description = "Conversion between markup formats"; license = lib.licenses.gpl2Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "pandoc"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ + lib.maintainers.maralorn lib.maintainers.sternenseemann + ]; }) {}; "pandoc-citeproc" = callPackage @@ -212740,10 +212229,8 @@ self: { }: mkDerivation { pname = "pandoc-crossref"; - version = "0.3.13.0"; - sha256 = "0fn5xrsh1x1rk74vd30yvg4ha9aicqbm7r1w0nrq9fkgcmz1q01x"; - revision = "1"; - editedCabalFile = "09sjf2fm09jcz1mnqlbmbfwb1237j26xcfgfq6b2fpl00gjg83di"; + version = "0.3.14.0"; + sha256 = "1f55xz5r7h6vjjj0dsq5glavn0zjh02imi4mja8qbwn3rvi67l86"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -213091,41 +212578,6 @@ self: { }) {}; "pandoc-plot" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, criterion - , data-default, directory, filepath, gitrev, hashable, hspec - , hspec-expectations, lifted-async, lifted-base, mtl - , optparse-applicative, pandoc, pandoc-types, shakespeare, tagsoup - , tasty, tasty-hspec, tasty-hunit, template-haskell, text - , typed-process, unix, yaml - }: - mkDerivation { - pname = "pandoc-plot"; - version = "1.4.1"; - sha256 = "1g9757kj50s0fjn7l29ncbp5fb8yhnp5z0sd46gaaprbgqrqfsgh"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base bytestring containers data-default directory filepath - hashable lifted-async lifted-base mtl pandoc pandoc-types - shakespeare tagsoup template-haskell text typed-process unix yaml - ]; - executableHaskellDepends = [ - base containers directory filepath gitrev optparse-applicative - pandoc pandoc-types template-haskell text typed-process - ]; - testHaskellDepends = [ - base containers directory filepath hspec hspec-expectations - pandoc-types tasty tasty-hspec tasty-hunit text - ]; - benchmarkHaskellDepends = [ - base criterion pandoc-types template-haskell text - ]; - description = "A Pandoc filter to include figures generated from code blocks using your plotting toolkit of choice"; - license = lib.licenses.gpl2Plus; - mainProgram = "pandoc-plot"; - }) {}; - - "pandoc-plot_1_5_5" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, criterion , data-default, directory, filepath, gitrev, hashable , hspec-expectations, lifted-async, lifted-base, mtl @@ -213157,7 +212609,6 @@ self: { ]; description = "A Pandoc filter to include figures generated from code blocks using your plotting toolkit of choice"; license = lib.licenses.gpl2Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "pandoc-plot"; }) {}; @@ -213593,7 +213044,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "pantry_0_7_0" = callPackage + "pantry_0_8_1" = callPackage ({ mkDerivation, aeson, ansi-terminal, base, bytestring, Cabal , casa-client, casa-types, conduit, conduit-extra, containers , cryptonite, cryptonite-conduit, digest, exceptions, filelock @@ -213607,8 +213058,8 @@ self: { }: mkDerivation { pname = "pantry"; - version = "0.7.0"; - sha256 = "19jb1gmpypdv4mdn3gp6fwgwhrynx5w7dy666yr4k23zdbkcrz1v"; + version = "0.8.1"; + sha256 = "01vd0k21mjaj59sjj4jpada3gd112vsjaba962xrp9v9zw2wmzh8"; libraryHaskellDepends = [ aeson ansi-terminal base bytestring Cabal casa-client casa-types conduit conduit-extra containers cryptonite cryptonite-conduit @@ -214261,6 +213712,7 @@ self: { libraryHaskellDepends = [ base parallel tree-monad ]; description = "Parallel Tree Search"; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; }) {}; "parameterized" = callPackage @@ -214298,8 +213750,8 @@ self: { }: mkDerivation { pname = "parameterized-utils"; - version = "2.1.5.0"; - sha256 = "1w0r09kqqdwlj13xq5swzci0crmarxz49bc01vyb92xzrsmjkhss"; + version = "2.1.6.0"; + sha256 = "118inzvvr72bfr1pzgxglrpd2fsz0kn9hk791imygl0fv1258rb6"; libraryHaskellDepends = [ base base-orphans constraints containers deepseq ghc-prim hashable hashtables indexed-traversable lens mtl profunctors @@ -214312,6 +213764,8 @@ self: { ]; description = "Classes and data structures for working with data-kind indexed types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "paramtree" = callPackage @@ -214613,6 +214067,8 @@ self: { ]; description = "Parse machine-readable GHC GC stats"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "parse-help" = callPackage @@ -214646,9 +214102,7 @@ self: { testHaskellDepends = [ base process ]; description = "Parse command-line arguments"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "parseargs-example"; - broken = true; }) {}; "parsec_3_1_15_1" = callPackage @@ -215162,7 +214616,6 @@ self: { description = "A fast parser combinator library backed by Typed Template Haskell"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "parsley-garnish" = callPackage @@ -215197,6 +214650,8 @@ self: { ]; description = "A fast, minimal parser"; license = "(BSD-2-Clause OR Apache-2.0)"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "partage" = callPackage @@ -215247,6 +214702,8 @@ self: { pname = "partial-isomorphisms"; version = "0.2.3.0"; sha256 = "08390b7vj02kbx0s5q3irxljr1p8w4rvm6kf33ivv04cal3r2q39"; + revision = "1"; + editedCabalFile = "1dgig6n1wpdzk5269k98h7pd295k2y21yfr2gaz5fcfliwckfql5"; libraryHaskellDepends = [ base template-haskell ]; description = "Partial isomorphisms"; license = lib.licenses.bsd3; @@ -215266,6 +214723,7 @@ self: { description = "Haskell 98 Partial Lenses"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "partial-order" = callPackage @@ -215299,18 +214757,6 @@ self: { }) {}; "partial-semigroup" = callPackage - ({ mkDerivation, base, doctest, hedgehog }: - mkDerivation { - pname = "partial-semigroup"; - version = "0.5.1.14"; - sha256 = "11xbdv24jy54wniappiqp6j27nm3wjgrbc8zmjkbfwdgb7fzlrws"; - libraryHaskellDepends = [ base ]; - testHaskellDepends = [ base doctest hedgehog ]; - description = "A partial binary associative operator"; - license = lib.licenses.asl20; - }) {}; - - "partial-semigroup_0_6_0_0" = callPackage ({ mkDerivation, base, hedgehog }: mkDerivation { pname = "partial-semigroup"; @@ -215322,7 +214768,6 @@ self: { testHaskellDepends = [ base hedgehog ]; description = "A partial binary associative operator"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "partial-semigroup-hedgehog" = callPackage @@ -215336,8 +214781,6 @@ self: { libraryHaskellDepends = [ base hedgehog partial-semigroup ]; description = "Property testing for partial semigroups using Hedgehog"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "partial-semigroup-test" = callPackage @@ -215350,7 +214793,6 @@ self: { doHaddock = false; description = "Testing utilities for the partial-semigroup package"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "partial-uri" = callPackage @@ -215675,33 +215117,12 @@ self: { ]; description = "Terminal-based presentations using Pandoc"; license = lib.licenses.gpl2Only; + hydraPlatforms = lib.platforms.none; mainProgram = "patat"; + broken = true; }) {}; "patch" = callPackage - ({ mkDerivation, base, constraints-extras, containers - , dependent-map, dependent-sum, directory, filemanip, filepath - , hedgehog, hlint, HUnit, indexed-traversable, lens - , monoidal-containers, semialign, semigroupoids, these - , transformers, witherable - }: - mkDerivation { - pname = "patch"; - version = "0.0.6.0"; - sha256 = "0wgxmk9vfrgnq5vg93jwzkszxmyrk91b36fnnlm8qr6mlg7j8m0z"; - libraryHaskellDepends = [ - base constraints-extras containers dependent-map dependent-sum - indexed-traversable lens monoidal-containers semialign - semigroupoids these transformers witherable - ]; - testHaskellDepends = [ - base containers directory filemanip filepath hedgehog hlint HUnit - ]; - description = "Data structures for describing changes to other data structures"; - license = lib.licenses.bsd3; - }) {}; - - "patch_0_0_7_0" = callPackage ({ mkDerivation, base, commutative-semigroups, constraints-extras , containers, dependent-map, dependent-sum, directory, filemanip , filepath, hedgehog, hlint, HUnit, indexed-traversable, lens @@ -215710,8 +215131,8 @@ self: { }: mkDerivation { pname = "patch"; - version = "0.0.7.0"; - sha256 = "0hpx1sh90rhvvd9j8nmpibdhj9jd4mmwbsr1c220ywaz7g6f3bxv"; + version = "0.0.8.1"; + sha256 = "06hdh1x5lilz1w4gakixwf9r0x4x13a2cijgim8zjf7lq5irlmw5"; libraryHaskellDepends = [ base commutative-semigroups constraints-extras containers dependent-map dependent-sum indexed-traversable lens @@ -215723,7 +215144,6 @@ self: { ]; description = "Data structures for describing changes to other data structures"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "patch-combinators" = callPackage @@ -216165,6 +215585,8 @@ self: { ]; description = "Pattern tries"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "patterns" = callPackage @@ -216862,6 +216284,8 @@ self: { ]; description = "Wrapper around the pdfinfo command"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "pdfname" = callPackage @@ -216881,7 +216305,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "pdfname"; - broken = true; }) {}; "pdfsplit" = callPackage @@ -216899,7 +216322,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "pdfsplit"; - broken = true; }) {}; "pdftotext" = callPackage @@ -217297,7 +216719,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "penrose"; - broken = true; }) {}; "peparser" = callPackage @@ -217438,21 +216859,6 @@ self: { }) {}; "perf" = callPackage - ({ mkDerivation, base, containers, foldl, mtl, rdtsc, text, time - , transformers - }: - mkDerivation { - pname = "perf"; - version = "0.9.0"; - sha256 = "116j1dygya9226q52vw6l6w64raldjpz7z22kmcm38v36i696lik"; - libraryHaskellDepends = [ - base containers foldl mtl rdtsc text time transformers - ]; - description = "Low-level run time measurement"; - license = lib.licenses.bsd3; - }) {}; - - "perf_0_10_1" = callPackage ({ mkDerivation, base, containers, deepseq, formatn, gauge, mtl , numhask-space, optparse-applicative, rdtsc, recursion-schemes , text, time, vector @@ -217474,6 +216880,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "perf-explore"; + broken = true; }) {}; "perf-analysis" = callPackage @@ -217501,35 +216908,6 @@ self: { }) {}; "perfect-hash-generator" = callPackage - ({ mkDerivation, base, binary, bytestring, containers, data-ordlist - , directory, filepath, hashable, HUnit, optparse-applicative - , random, test-framework, test-framework-hunit, text - , unordered-containers, vector - }: - mkDerivation { - pname = "perfect-hash-generator"; - version = "0.2.0.6"; - sha256 = "045iyxjnx1yzl9xqk5fv8qxjz29sg2pfndry1v24z6a5r88pcwnz"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base binary bytestring containers data-ordlist directory filepath - hashable text unordered-containers vector - ]; - executableHaskellDepends = [ - base binary bytestring containers hashable optparse-applicative - random text unordered-containers vector - ]; - testHaskellDepends = [ - base binary bytestring hashable HUnit optparse-applicative - test-framework test-framework-hunit text unordered-containers - vector - ]; - description = "Perfect minimal hashing implementation in native Haskell"; - license = lib.licenses.asl20; - }) {}; - - "perfect-hash-generator_1_0_0" = callPackage ({ mkDerivation, base, binary, bytestring, containers, data-default , data-ordlist, directory, filepath, hashable, HUnit , optparse-applicative, random, sorted-list, test-framework @@ -217557,7 +216935,6 @@ self: { ]; description = "Perfect minimal hashing implementation in native Haskell"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "perfect-vector-shuffle" = callPackage @@ -217882,6 +217259,8 @@ self: { description = "Serialization library with state and leb128 encoding"; license = lib.licenses.bsd3; badPlatforms = [ "aarch64-linux" "armv7l-linux" ]; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "persist2er" = callPackage @@ -217957,8 +217336,8 @@ self: { pname = "persistent"; version = "2.13.3.5"; sha256 = "0z69yvk0rd29dp5qdhi4p587b891y90azrzzpa3g10cxp3gyywvm"; - revision = "2"; - editedCabalFile = "1x802a6ldvgjjn7mdh8d2c0h5cl0jajvf3g75rza7c8cxrn8f2vw"; + revision = "3"; + editedCabalFile = "0kyipwaspzah6f88s51d61kr8i9g05grm2g0lnnw28jp06nggg5d"; libraryHaskellDepends = [ aeson attoparsec base base64-bytestring blaze-html bytestring conduit containers fast-logger http-api-data lift-type monad-logger @@ -217982,7 +217361,7 @@ self: { maintainers = [ lib.maintainers.psibi ]; }) {}; - "persistent_2_14_3_0" = callPackage + "persistent_2_14_4_3" = callPackage ({ mkDerivation, aeson, attoparsec, base, base64-bytestring , blaze-html, bytestring, conduit, containers, criterion, deepseq , fast-logger, file-embed, hspec, http-api-data, lift-type @@ -217993,24 +217372,22 @@ self: { }: mkDerivation { pname = "persistent"; - version = "2.14.3.0"; - sha256 = "06cs30886s0y50kw4p2x8jw1k173il4mfqdfbkkdnd6kc97j920j"; - revision = "1"; - editedCabalFile = "1qbi74kmjk07wgib2y6pscjbr8mazlj490928h5bvahw10jx3611"; + version = "2.14.4.3"; + sha256 = "057jsf32csrnvfavlz3zgk70ql6y5b8xx4zkmwfg4g6ghsh8gkcv"; libraryHaskellDepends = [ aeson attoparsec base base64-bytestring blaze-html bytestring - conduit containers fast-logger http-api-data lift-type monad-logger - mtl path-pieces resource-pool resourcet scientific silently - template-haskell text th-lift-instances time transformers unliftio - unliftio-core unordered-containers vault vector + conduit containers deepseq fast-logger http-api-data lift-type + monad-logger mtl path-pieces resource-pool resourcet scientific + silently template-haskell text th-lift-instances time transformers + unliftio unliftio-core unordered-containers vault vector ]; testHaskellDepends = [ aeson attoparsec base base64-bytestring blaze-html bytestring - conduit containers fast-logger hspec http-api-data monad-logger mtl - path-pieces QuickCheck quickcheck-instances resource-pool resourcet - scientific shakespeare silently template-haskell text - th-lift-instances time transformers unliftio unliftio-core - unordered-containers vector + conduit containers deepseq fast-logger hspec http-api-data + monad-logger mtl path-pieces QuickCheck quickcheck-instances + resource-pool resourcet scientific shakespeare silently + template-haskell text th-lift-instances time transformers unliftio + unliftio-core unordered-containers vector ]; benchmarkHaskellDepends = [ base criterion deepseq file-embed template-haskell text @@ -218268,8 +217645,8 @@ self: { pname = "persistent-mongoDB"; version = "2.13.0.1"; sha256 = "1ck74kpzkz623c43qb8r1cjq8chi2p721vx95zrpciz8jm496235"; - revision = "1"; - editedCabalFile = "1h007vh9cx0y963xacxhf3rn2wjnc22ygil9c0z13mljmqssf5h6"; + revision = "2"; + editedCabalFile = "169wvga2zkgq0znvpnmpcyz0wy92sspjsrg48vyj2fr58yvvhbz5"; libraryHaskellDepends = [ aeson base bson bytestring cereal conduit http-api-data mongoDB network path-pieces persistent resource-pool resourcet text time @@ -218288,47 +217665,15 @@ self: { "persistent-mtl" = callPackage ({ mkDerivation, base, bytestring, conduit, containers, esqueleto - , exceptions, explainable-predicates, monad-logger, mtl, persistent - , persistent-postgresql, persistent-sqlite, persistent-template - , resource-pool, resourcet, tasty, tasty-golden, tasty-hunit, text - , transformers, unliftio, unliftio-core, unliftio-pool - }: - mkDerivation { - pname = "persistent-mtl"; - version = "0.4.0.0"; - sha256 = "1i8azgcgj245dw59wnsh1cpn8n3l6b8s8gh5rim8jl315rxbsn5w"; - libraryHaskellDepends = [ - base conduit containers exceptions monad-logger mtl persistent - resource-pool resourcet text transformers unliftio unliftio-core - unliftio-pool - ]; - testHaskellDepends = [ - base bytestring conduit containers esqueleto explainable-predicates - monad-logger persistent persistent-postgresql persistent-sqlite - persistent-template resource-pool resourcet tasty tasty-golden - tasty-hunit text unliftio - ]; - description = "Monad transformer for the persistent API"; - license = lib.licenses.bsd3; - }) {}; - - "persistent-mtl_0_5_0_0" = callPackage - ({ mkDerivation, base, bytestring, conduit, containers, esqueleto - , exceptions, explainable-predicates, monad-logger, mtl, persistent + , explainable-predicates, monad-logger, persistent , persistent-postgresql, persistent-sqlite, persistent-template , resource-pool, resourcet, tasty, tasty-autocollect, tasty-golden - , tasty-hunit, text, transformers, unliftio, unliftio-core - , unliftio-pool + , tasty-hunit, text, unliftio }: mkDerivation { pname = "persistent-mtl"; - version = "0.5.0.0"; - sha256 = "1xmn2zch7zxmjixlyjavl6wwdf0cjqzp01fp7xiy339wfd5higp2"; - libraryHaskellDepends = [ - base conduit containers exceptions monad-logger mtl persistent - resource-pool resourcet text transformers unliftio unliftio-core - unliftio-pool - ]; + version = "0.5.0.1"; + sha256 = "17sxwa8p95nrkacjr1wnpihwfq121z1pkyh1nvlfjy76b4aalqhi"; testHaskellDepends = [ base bytestring conduit containers esqueleto explainable-predicates monad-logger persistent persistent-postgresql persistent-sqlite @@ -218521,7 +217866,6 @@ self: { description = "Template-Haskell helpers for integrating protobufs with persistent"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "persistent-qq" = callPackage @@ -218589,6 +217933,8 @@ self: { pname = "persistent-redis"; version = "2.13.0.1"; sha256 = "1p03bwsldi3w4vsig1krnilhpbkkhzrm240jbx22q514922kgjr9"; + revision = "1"; + editedCabalFile = "0k383hvfpd0s38a8fmr2zad3f10lvz7sj969ainx9fd7hf550br2"; libraryHaskellDepends = [ aeson base binary bytestring hedis http-api-data mtl path-pieces persistent scientific text time transformers utf8-string @@ -219255,6 +218601,7 @@ self: { description = "A mid-level PostgreSQL client library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "pgstream" = callPackage @@ -219660,7 +219007,6 @@ self: { ]; description = "A library for working with generalized phonetic languages usage"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "pldPL"; }) {}; @@ -219845,7 +219191,6 @@ self: { ]; description = "Helps to create texts with the given phonetic properties (e. g. poetic)."; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "phonetic-languages-simplified-generalized-examples-common" = callPackage @@ -219862,7 +219207,6 @@ self: { ]; description = "Some common code for phonetic languages generalized functionality"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "phonetic-languages-simplified-generalized-properties-array" = callPackage @@ -219880,7 +219224,6 @@ self: { ]; description = "Some 'properties' of the phonetic languages approach text"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "phonetic-languages-simplified-lists-examples" = callPackage @@ -220097,6 +219440,7 @@ self: { ]; description = "Rename photo image files based on EXIF shoot date"; license = lib.licenses.isc; + hydraPlatforms = lib.platforms.none; mainProgram = "photoname"; }) {}; @@ -220257,6 +219601,8 @@ self: { executableHaskellDepends = [ base text ]; description = "Control an Adafruit character LCD and keypad kit on a Raspberry Pi"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "pia-forward" = callPackage @@ -220439,8 +219785,8 @@ self: { ({ mkDerivation, base, directory, process, unix }: mkDerivation { pname = "pid1"; - version = "0.1.3.0"; - sha256 = "1m2i03ncgn1y6h2352pnvhcqzif45505vlnxh11xngvjx47f85a1"; + version = "0.1.3.1"; + sha256 = "1xyn50zg4phdv1d7bxqq2ljnil4vlw7qqc7cdlzlc8imxfhr30nl"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base directory process unix ]; @@ -220576,6 +219922,8 @@ self: { ]; description = "Access to the Pinboard API"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "pinboard-notes-backup" = callPackage @@ -220585,8 +219933,8 @@ self: { }: mkDerivation { pname = "pinboard-notes-backup"; - version = "1.0.5.4"; - sha256 = "1p6if0hzgab49l39czj18b18z5lqm6akajfp68x8mrbydv55ij54"; + version = "1.0.5.6"; + sha256 = "1vghgv9kmlch9g14imp5skb1ia6nndn1bwhpx7r262fn4dv88372"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -221024,8 +220372,6 @@ self: { testHaskellDepends = [ base bytestring mtl pipes QuickCheck ]; description = "Pipes to group by any delimiter (such as lines with carriage returns)"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "pipes-brotli" = callPackage @@ -221087,7 +220433,6 @@ self: { description = "Streaming compression/decompression via pipes"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) bzip2;}; "pipes-cacophony" = callPackage @@ -221142,8 +220487,6 @@ self: { ]; description = "Encode and decode cborg streams using the pipes and cborg libraries"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "pipes-cellular" = callPackage @@ -221454,8 +220797,8 @@ self: { pname = "pipes-http"; version = "1.0.6"; sha256 = "00579dpb7mh8nli5gfr100w0mrn6nvqhbj50qzxc2m5cvw4gncd2"; - revision = "2"; - editedCabalFile = "1pyxrq9m8c1v747c9bk75z418cyivhf8mbgdgfj9g2dvcf6zaq5w"; + revision = "3"; + editedCabalFile = "0m38lrmr356gfrv6gnrncwiy1hnh882084yn7vgmjsqssgvhbz8a"; libraryHaskellDepends = [ base bytestring http-client http-client-tls pipes ]; @@ -221637,8 +220980,6 @@ self: { ]; description = "Use network sockets together with the pipes library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "pipes-network-tls" = callPackage @@ -221656,7 +220997,6 @@ self: { ]; description = "TLS-secured network connections support for pipes"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "pipes-network-ws" = callPackage @@ -221852,8 +221192,8 @@ self: { pname = "pipes-safe"; version = "2.3.4"; sha256 = "1ha0q1dwl52rn59shmk8jhp7grngpiwmp8x4qa9h54flvxkqk12x"; - revision = "1"; - editedCabalFile = "0qhlam3m0zrhl8l5pilxhhgigq56n7wp6cak9hpca3b68bh9wph4"; + revision = "2"; + editedCabalFile = "0g1ib89dwhblc19vc8spcjdc10pg56avs9480i55ab315wjfsna2"; libraryHaskellDepends = [ base containers exceptions monad-control mtl pipes primitive transformers transformers-base @@ -222030,8 +221370,6 @@ self: { ]; description = "Zlib and GZip compression and decompression for Pipes streams"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "pisigma" = callPackage @@ -222218,6 +221556,8 @@ self: { ]; description = "Pixiv API binding based on servant-client"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "piyo" = callPackage @@ -222311,29 +221651,6 @@ self: { }) {}; "pkgtreediff" = callPackage - ({ mkDerivation, async, base, directory, extra, filepath, Glob - , http-client, http-client-tls, http-directory, koji, rpm-nvr - , simple-cmd, simple-cmd-args, text - }: - mkDerivation { - pname = "pkgtreediff"; - version = "0.5.0"; - sha256 = "0zlz53adlah00zxbh4kqvpm3vinn0248n8rzdxpdsbrbrlnlj8y9"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base rpm-nvr ]; - executableHaskellDepends = [ - async base directory extra filepath Glob http-client - http-client-tls http-directory koji rpm-nvr simple-cmd - simple-cmd-args text - ]; - description = "RPM package tree diff tool"; - license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; - mainProgram = "pkgtreediff"; - }) {}; - - "pkgtreediff_0_6_0" = callPackage ({ mkDerivation, async, base, bytestring, directory, extra , filepath, Glob, http-client, http-client-tls, http-directory , http-types, koji, rpm-nvr, simple-cmd, simple-cmd-args, text @@ -222712,8 +222029,6 @@ self: { ]; description = "run a subprocess, combining stdout and stderr"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "plist" = callPackage @@ -222949,8 +222264,8 @@ self: { }: mkDerivation { pname = "plotlyhs"; - version = "0.2.1"; - sha256 = "1d7cqy22myp6r0x0b00amn64fra0lklb9jy2hd8ic9lxg0nd8pn9"; + version = "0.2.3"; + sha256 = "1j7ns90cjl7gb9nmlsflnikwbsfycnh727hzmb27gaw6s95r047m"; libraryHaskellDepends = [ aeson base blaze-html blaze-markup bytestring lucid microlens microlens-th text time @@ -223000,6 +222315,8 @@ self: { ]; description = "Diagrams based plotting library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "plotserver-api" = callPackage @@ -223013,6 +222330,37 @@ self: { license = lib.licenses.mit; }) {}; + "plow-log" = callPackage + ({ mkDerivation, aeson, base, text }: + mkDerivation { + pname = "plow-log"; + version = "0.1.6.0"; + sha256 = "1vb1842pxh84vm6kbrd40f13qgb91rn4i0c3bv726znmdh0lqdsz"; + revision = "1"; + editedCabalFile = "00lwbgqr65yq8fidpdxr3n57zz3abvmhrpc5pcj03zxj26lkrvkl"; + libraryHaskellDepends = [ aeson base text ]; + description = "Contravariant logging library"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "plow-log-async" = callPackage + ({ mkDerivation, base, conduit, plow-log, stm-conduit, text, time + , unliftio + }: + mkDerivation { + pname = "plow-log-async"; + version = "0.1.4.0"; + sha256 = "14wg7h1vfkc3yal9951k9prhx0v3kkp5hjbbv8lx7c4n4clm1p2m"; + libraryHaskellDepends = [ + base conduit plow-log stm-conduit text time unliftio + ]; + description = "Async IO tracer for plow-log"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "plucky" = callPackage ({ mkDerivation, base, mtl, transformers }: mkDerivation { @@ -223519,6 +222867,7 @@ self: { license = lib.licenses.mpl20; hydraPlatforms = lib.platforms.none; mainProgram = "poke-exe"; + broken = true; }) {}; "pokemon-go-protobuf-types" = callPackage @@ -223561,7 +222910,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "poker-exe"; - broken = true; }) {}; "poker-base" = callPackage @@ -223584,6 +222932,8 @@ self: { testToolDepends = [ tasty-discover ]; description = "A library for core poker types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "poker-eval" = callPackage @@ -223922,6 +223272,8 @@ self: { ]; description = "Polynomials"; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polynomial-algebra" = callPackage @@ -223970,8 +223322,8 @@ self: { }: mkDerivation { pname = "polysemy"; - version = "1.6.0.0"; - sha256 = "1s2hmfp1ii5q8qpxiqm825ykh4fpcq06wphfqbhp7p3sxkkr3c68"; + version = "1.7.1.0"; + sha256 = "09629gyjdp567dsqk0mgzzk5glrwnpn0cwanank5z3zkqg05d5ac"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ async base containers first-class-families mtl QuickCheck stm syb @@ -223992,33 +223344,27 @@ self: { license = lib.licenses.bsd3; }) {}; - "polysemy_1_7_1_0" = callPackage + "polysemy_1_8_0_0" = callPackage ({ mkDerivation, async, base, Cabal, cabal-doctest, containers - , criterion, doctest, first-class-families, free, freer-simple - , hspec, hspec-discover, inspection-testing, mtl, QuickCheck, stm - , syb, template-haskell, th-abstraction, transformers, type-errors - , unagi-chan + , doctest, first-class-families, hspec, hspec-discover + , inspection-testing, mtl, stm, syb, template-haskell + , th-abstraction, transformers, type-errors, unagi-chan }: mkDerivation { pname = "polysemy"; - version = "1.7.1.0"; - sha256 = "09629gyjdp567dsqk0mgzzk5glrwnpn0cwanank5z3zkqg05d5ac"; + version = "1.8.0.0"; + sha256 = "1fyysldfnirhk8nfgiji248rc35c97r0hm4hk6j1n12ynhxcaiwb"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ - async base containers first-class-families mtl QuickCheck stm syb + async base containers first-class-families mtl stm syb template-haskell th-abstraction transformers type-errors unagi-chan ]; testHaskellDepends = [ async base containers doctest first-class-families hspec - inspection-testing mtl QuickCheck stm syb template-haskell + hspec-discover inspection-testing mtl stm syb template-haskell th-abstraction transformers type-errors unagi-chan ]; testToolDepends = [ hspec-discover ]; - benchmarkHaskellDepends = [ - async base containers criterion first-class-families free - freer-simple mtl QuickCheck stm syb template-haskell th-abstraction - transformers type-errors unagi-chan - ]; description = "Higher-order, low-boilerplate free monads"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; @@ -224044,6 +223390,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Experimental, RandomFu effect and interpreters for polysemy"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "polysemy-check" = callPackage @@ -224053,8 +223400,8 @@ self: { }: mkDerivation { pname = "polysemy-check"; - version = "0.9.0.0"; - sha256 = "092p92aavd3jqq7kjp3n2kx3zyg6k49zd99rliaw4gvgn6zk8k0l"; + version = "0.9.0.1"; + sha256 = "0zv6sf379pcnrj39hzmgmw0r0d4nsfizcsgl00c6c5f7n17cc53b"; libraryHaskellDepends = [ base containers kind-generics kind-generics-th polysemy QuickCheck ]; @@ -224095,8 +223442,8 @@ self: { }: mkDerivation { pname = "polysemy-conc"; - version = "0.10.0.0"; - sha256 = "17683p4j54kapg279cbdxl7j0gyrshcsxcs0xngyaplgajwq6pnk"; + version = "0.11.1.0"; + sha256 = "0kwfvwv4hzbm51sk78k1ka9i3f23jp9r8d0acs4gjnbbjfvv78wk"; libraryHaskellDepends = [ async base containers incipit-core polysemy polysemy-resume polysemy-time stm stm-chans torsor unagi-chan unix @@ -224104,7 +223451,7 @@ self: { testHaskellDepends = [ async base hedgehog incipit-core polysemy polysemy-plugin polysemy-resume polysemy-test polysemy-time stm tasty - tasty-hedgehog time unagi-chan unix + tasty-hedgehog time unix ]; description = "Polysemy effects for concurrency"; license = "BSD-2-Clause-Patent"; @@ -224146,8 +223493,8 @@ self: { }: mkDerivation { pname = "polysemy-fskvstore"; - version = "0.1.1.0"; - sha256 = "1jpiqq65lv1dp7h2wdl2b2czpax6wqwlv4fqh8vhg26pw49mc2lr"; + version = "0.1.2.0"; + sha256 = "165lj55kmra01kxpr26n6a35989qihvwipdxkdbf2gi78xglryrp"; libraryHaskellDepends = [ base bytestring path polysemy polysemy-kvstore rio unliftio-path ]; @@ -224239,8 +223586,8 @@ self: { }: mkDerivation { pname = "polysemy-log"; - version = "0.7.2.0"; - sha256 = "1n206b3g64gdrz488q0y11by25khn5aka9qx37vfg65mrnzald78"; + version = "0.8.0.0"; + sha256 = "0zvlx1y852c1jyaw3lcxps8yb6qk56i8drnfbqvdpss3hb6jhii7"; libraryHaskellDepends = [ ansi-terminal async base incipit-core polysemy polysemy-conc polysemy-time stm time @@ -224257,26 +223604,25 @@ self: { }) {}; "polysemy-log-co" = callPackage - ({ mkDerivation, base, co-log, co-log-polysemy, incipit-core - , polysemy, polysemy-conc, polysemy-log, polysemy-test - , polysemy-time, stm, tasty + ({ mkDerivation, base, co-log, co-log-concurrent, co-log-polysemy + , incipit-core, polysemy, polysemy-conc, polysemy-log + , polysemy-test, polysemy-time, stm, tasty }: mkDerivation { pname = "polysemy-log-co"; - version = "0.7.2.0"; - sha256 = "0g3nxfahlsp97zjmy484dgvwkjvfpf70f1zhd6kvpmk9dik6n9r7"; + version = "0.8.0.0"; + sha256 = "09r4aqkwfjnwnlym97mfasghb3c9jq9vlmqlycz0kgsid8hdjh52"; libraryHaskellDepends = [ - base co-log co-log-polysemy incipit-core polysemy polysemy-conc - polysemy-log polysemy-time stm + base co-log co-log-concurrent co-log-polysemy incipit-core polysemy + polysemy-conc polysemy-log polysemy-time stm ]; testHaskellDepends = [ - base co-log co-log-polysemy incipit-core polysemy polysemy-log - polysemy-test polysemy-time stm tasty + base co-log co-log-concurrent co-log-polysemy incipit-core polysemy + polysemy-log polysemy-test polysemy-time stm tasty ]; description = "Colog adapters for Polysemy.Log"; license = "BSD-2-Clause-Patent"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "polysemy-log-di" = callPackage @@ -224286,8 +223632,8 @@ self: { }: mkDerivation { pname = "polysemy-log-di"; - version = "0.7.2.0"; - sha256 = "0v7zwvb7aapr0cslvmn1kzcvvdr9xw4bzqppxkpzia6cnzhbr09y"; + version = "0.8.0.0"; + sha256 = "1gmwrmnw4675y8hzywazjcafd0hkfal7rxpcycz4dpvzsqznrcrz"; libraryHaskellDepends = [ base di-polysemy incipit-core polysemy polysemy-conc polysemy-log polysemy-time stm @@ -224318,8 +223664,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Primitive functions and data types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "polysemy-methodology" = callPackage @@ -224351,6 +223695,8 @@ self: { ]; description = "Logging functions for polysemy-methodology"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polysemy-methodology-composite" = callPackage @@ -224369,6 +223715,7 @@ self: { ]; description = "Functions for using polysemy-methodology with composite"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "polysemy-mocks" = callPackage @@ -224410,32 +223757,11 @@ self: { libraryHaskellDepends = [ base path polysemy polysemy-extra ]; description = "Polysemy versions of Path functions"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polysemy-plugin" = callPackage - ({ mkDerivation, base, Cabal, cabal-doctest, containers, doctest - , ghc, ghc-tcplugins-extra, hspec, hspec-discover - , inspection-testing, polysemy, should-not-typecheck, syb - , transformers - }: - mkDerivation { - pname = "polysemy-plugin"; - version = "0.4.1.1"; - sha256 = "0sw0wzasclj4ibzc4g701p1xvs8vzliaflsgyyj9digajjg1m9n7"; - setupHaskellDepends = [ base Cabal cabal-doctest ]; - libraryHaskellDepends = [ - base containers ghc ghc-tcplugins-extra polysemy syb transformers - ]; - testHaskellDepends = [ - base containers doctest ghc ghc-tcplugins-extra hspec - inspection-testing polysemy should-not-typecheck syb transformers - ]; - testToolDepends = [ hspec-discover ]; - description = "Disambiguate obvious uses of effects"; - license = lib.licenses.bsd3; - }) {}; - - "polysemy-plugin_0_4_3_1" = callPackage ({ mkDerivation, base, Cabal, cabal-doctest, containers, doctest , ghc, ghc-tcplugins-extra, hspec, hspec-discover , inspection-testing, polysemy, should-not-typecheck, syb @@ -224456,7 +223782,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Disambiguate obvious uses of effects"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "polysemy-process" = callPackage @@ -224467,8 +223792,8 @@ self: { }: mkDerivation { pname = "polysemy-process"; - version = "0.10.0.0"; - sha256 = "1f0bnpzd1k1aj9f3100z240ljvlw9b5ikafif05bwzcpavsy7zli"; + version = "0.11.1.0"; + sha256 = "09bzjdnj15bv0fnvs99f6x71yqmy0lbsnxbr4w3mxn4yp73sppc1"; libraryHaskellDepends = [ base incipit-core path path-io polysemy polysemy-conc polysemy-resume polysemy-time posix-pty process stm-chans @@ -224520,6 +223845,8 @@ self: { libraryHaskellDepends = [ base polysemy req ]; description = "Polysemy effect for req"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polysemy-resume" = callPackage @@ -224561,7 +223888,6 @@ self: { description = "Well-typed filesystem operation effects"; license = lib.licenses.agpl3Plus; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "polysemy-several" = callPackage @@ -224586,6 +223912,8 @@ self: { libraryHaskellDepends = [ base bytestring polysemy socket ]; description = "Socket effect for polysemy"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polysemy-test" = callPackage @@ -224655,6 +223983,8 @@ self: { ]; description = "Experimental video processing DSL for polysemy"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polysemy-vinyl" = callPackage @@ -224672,6 +224002,8 @@ self: { ]; description = "Functions for mapping vinyl records in polysemy"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "polysemy-webserver" = callPackage @@ -225108,8 +224440,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Static key-value storage backed by poppy"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "poppler" = callPackage @@ -225266,7 +224596,9 @@ self: { executableHaskellDepends = [ base warp ]; description = "A minimalist HTTP server framework written on top of wai"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "porpoise-example"; + broken = true; }) {}; "port-utils" = callPackage @@ -225375,6 +224707,8 @@ self: { pname = "portray"; version = "0.3.0"; sha256 = "059lyc5p7726y9yj7c3by854czhbiwspgrgiqa6qp22pfbx2ycqn"; + revision = "1"; + editedCabalFile = "06bdmmfxav5ah20bdj09rbgvk4ncjicx1r48m3l9xjcczbm28y5m"; libraryHaskellDepends = [ base bytestring containers text wrapped ]; @@ -225392,6 +224726,8 @@ self: { pname = "portray-diff"; version = "0.1.1"; sha256 = "1z09bs62hh9hsf88qkbsqp3ydxr66jdpbp9s8c7d142vcinmi3wm"; + revision = "1"; + editedCabalFile = "1p5ks82k2q59z20kc8nk5aj8n7isjnf0wc07lqv1djlalb3cwwy3"; libraryHaskellDepends = [ base containers dlist portray text wrapped ]; @@ -225406,14 +224742,13 @@ self: { pname = "portray-diff-hunit"; version = "0.1.0.0"; sha256 = "0gig1gvw0s7cl4jbffqh53r7lfs08clkcjpdypjjbpk0815pk34h"; - revision = "3"; - editedCabalFile = "05y5cci0kip5ribjkkinv7nqfvbjsq7z26vj3b170vd7awgfb2xq"; + revision = "5"; + editedCabalFile = "0yz9jfxsrnb5hb694bjgxc7gwl1dw2m54qnm9z9js51fc1kk2ppa"; libraryHaskellDepends = [ base HUnit portray-diff portray-pretty pretty ]; description = "HUnit assertions based on portray-diff"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "portray-diff-quickcheck" = callPackage @@ -225422,14 +224757,13 @@ self: { pname = "portray-diff-quickcheck"; version = "0.1.0.0"; sha256 = "1kif82y8bapf5d3awkfv7wp3ih89q3p14djanyz6jfapryhccm12"; - revision = "3"; - editedCabalFile = "0c6ld7l8k4kk66rikxknq0c6mjc7dwa1bw7bqbajqfdb0jjbaafc"; + revision = "4"; + editedCabalFile = "1jy6qviv8phj2dr79bkrqsaal1xb940hzhynq84vbkgk2szlcwqr"; libraryHaskellDepends = [ base portray-diff portray-pretty QuickCheck ]; description = "QuickCheck tests with portray-diff"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "portray-pretty" = callPackage @@ -225440,6 +224774,8 @@ self: { pname = "portray-pretty"; version = "0.1.0.3"; sha256 = "08gf384mqsxblxzmhr6ipskvipgbdgx72s3nmdhsld53spg5zhd5"; + revision = "1"; + editedCabalFile = "03r638j282ldxzkpw07l7cnp4kxwh3325bcljkn96hs1l6vy5q4j"; libraryHaskellDepends = [ base portray portray-diff pretty text ]; testHaskellDepends = [ base HUnit portray portray-diff pretty test-framework @@ -225447,8 +224783,6 @@ self: { ]; description = "Portray backend for pretty"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "portray-prettyprinter" = callPackage @@ -225460,6 +224794,8 @@ self: { pname = "portray-prettyprinter"; version = "0.2.1"; sha256 = "0dzhzrv6xq67sbf6ivisghlx4pq53h3qh859ai5rs6cikg6xfb7b"; + revision = "1"; + editedCabalFile = "1jz8jpi4in8znsgzcb9kcgv2zgrw2v99zkb311wjwrzk7vgjm9b7"; libraryHaskellDepends = [ base portray portray-diff prettyprinter prettyprinter-ansi-terminal text @@ -225471,8 +224807,6 @@ self: { ]; description = "Portray backend for prettyprinter"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "ports" = callPackage @@ -225579,8 +224913,8 @@ self: { ({ mkDerivation, base, data-dword, deepseq, scientific }: mkDerivation { pname = "posit"; - version = "3.2.0.0"; - sha256 = "1qbf413cj0z35gc5dglkrzk5l20fvrcqs964jpn927k37i3dmxx1"; + version = "3.2.0.3"; + sha256 = "02rjcar4dzdxysk2zixqday8nrwa4j8ypcflb1g12a7v5f1xim66"; libraryHaskellDepends = [ base data-dword deepseq scientific ]; testHaskellDepends = [ base ]; license = lib.licenses.bsd3; @@ -225644,8 +224978,8 @@ self: { }: mkDerivation { pname = "posix-api"; - version = "0.3.5.0"; - sha256 = "0ygww5fcikalyqzliqdrcd4n4g8plhr01gz5p6zd0c5f1y9jgw7x"; + version = "0.4.0.0"; + sha256 = "0j4iz6llg8qgi5jfg51asimw3qwzwlacj6ac0rm0a2g0756wf7mv"; libraryHaskellDepends = [ base byte-order byteslice primitive primitive-addr primitive-offset primitive-unlifted run-st @@ -225796,9 +225130,7 @@ self: { ]; description = "Sleep tracker for X11, using XScreenSaver extension and manual input"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "posplyu"; - broken = true; }) {}; "possible" = callPackage @@ -225932,31 +225264,6 @@ self: { }) {}; "postgresql-binary" = callPackage - ({ mkDerivation, aeson, base, binary-parser, bytestring - , bytestring-strict-builder, containers, criterion, network-ip - , postgresql-libpq, QuickCheck, quickcheck-instances, rerebase - , scientific, tasty, tasty-hunit, tasty-quickcheck, text, time - , transformers, unordered-containers, uuid, vector - }: - mkDerivation { - pname = "postgresql-binary"; - version = "0.12.5"; - sha256 = "0fnc97mw4c0aipbqih8jz23ma8xrspgw7r56qq3vzl4k2p9z49vj"; - libraryHaskellDepends = [ - aeson base binary-parser bytestring bytestring-strict-builder - containers network-ip scientific text time transformers - unordered-containers uuid vector - ]; - testHaskellDepends = [ - aeson network-ip postgresql-libpq QuickCheck quickcheck-instances - rerebase tasty tasty-hunit tasty-quickcheck - ]; - benchmarkHaskellDepends = [ criterion rerebase ]; - description = "Encoders and decoders for the PostgreSQL's binary format"; - license = lib.licenses.mit; - }) {}; - - "postgresql-binary_0_13_1" = callPackage ({ mkDerivation, aeson, base, binary-parser, bytestring , bytestring-strict-builder, containers, criterion, network-ip , postgresql-libpq, QuickCheck, quickcheck-instances, rerebase @@ -225979,7 +225286,6 @@ self: { benchmarkHaskellDepends = [ criterion rerebase ]; description = "Encoders and decoders for the PostgreSQL's binary format"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "postgresql-common" = callPackage @@ -225996,6 +225302,8 @@ self: { ]; description = "Library for sharing common PostgreSQL types across Haskell PostgreSQL libraries"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "postgresql-common-persistent" = callPackage @@ -226014,6 +225322,7 @@ self: { ]; description = "Persistent compatibility for postgresql-common"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "postgresql-config" = callPackage @@ -226069,6 +225378,8 @@ self: { libraryHaskellDepends = [ base bytestring postgresql-simple ]; description = "Cube support for postgresql-simple"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "postgresql-error-codes" = callPackage @@ -226217,7 +225528,9 @@ self: { executableHaskellDepends = [ base filepath ]; description = "An ORM (Object Relational Mapping) and migrations DSL for PostgreSQL"; license = "GPL"; + hydraPlatforms = lib.platforms.none; mainProgram = "pg_migrate"; + broken = true; }) {}; "postgresql-placeholder-converter" = callPackage @@ -226284,39 +225597,6 @@ self: { }) {}; "postgresql-query" = callPackage - ({ mkDerivation, aeson, attoparsec, base, blaze-builder, bytestring - , containers, data-default, exceptions, file-embed - , generic-arbitrary, haskell-src-meta, hreader, hset, inflections - , monad-control, monad-logger, mtl, postgresql-simple, QuickCheck - , quickcheck-assertions, quickcheck-instances, resource-pool - , semigroups, tasty, tasty-hunit, tasty-quickcheck, tasty-th - , template-haskell, text, th-lift, th-lift-instances, time - , transformers, transformers-base, transformers-compat - }: - mkDerivation { - pname = "postgresql-query"; - version = "3.9.0"; - sha256 = "1520crprhdnan7w5qm9h42r6cxz4v6zffwwfvybzwpczj2g3laa6"; - libraryHaskellDepends = [ - aeson attoparsec base blaze-builder bytestring containers - data-default exceptions file-embed haskell-src-meta hreader hset - inflections monad-control monad-logger mtl postgresql-simple - resource-pool semigroups template-haskell text th-lift - th-lift-instances time transformers transformers-base - transformers-compat - ]; - testHaskellDepends = [ - attoparsec base generic-arbitrary postgresql-simple QuickCheck - quickcheck-assertions quickcheck-instances tasty tasty-hunit - tasty-quickcheck tasty-th text time - ]; - description = "Sql interpolating quasiquote plus some kind of primitive ORM using it"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {}; - - "postgresql-query_3_10_0" = callPackage ({ mkDerivation, aeson, attoparsec, base, blaze-builder, bytestring , containers, data-default, doctest, exceptions, file-embed , generic-arbitrary, haskell-src-meta, hreader, hset, inflections @@ -226368,7 +225648,9 @@ self: { testHaskellDepends = [ base binary bytestring cereal hspec ]; description = "PostgreSQL logical streaming replication library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "replicant-example"; + broken = true; }) {}; "postgresql-resilient" = callPackage @@ -226408,6 +225690,37 @@ self: { }) {}; "postgresql-simple" = callPackage + ({ mkDerivation, aeson, attoparsec, base, base16-bytestring + , bytestring, bytestring-builder, case-insensitive, containers + , cryptohash-md5, filepath, hashable, HUnit, inspection-testing + , Only, postgresql-libpq, scientific, tasty, tasty-golden + , tasty-hunit, template-haskell, text, time-compat, transformers + , uuid-types, vector + }: + mkDerivation { + pname = "postgresql-simple"; + version = "0.6.4"; + sha256 = "0rz2bklxp4pvbxb2w49h5p6pbwabn6d5d4j4mrya4fpa0d13k43d"; + revision = "8"; + editedCabalFile = "1qavb3qs1g307pc19k9y3yvqp0c1srwsplijvayn9ldp0bxdy6q8"; + libraryHaskellDepends = [ + aeson attoparsec base bytestring bytestring-builder + case-insensitive containers hashable Only postgresql-libpq + scientific template-haskell text time-compat transformers + uuid-types vector + ]; + testHaskellDepends = [ + aeson base base16-bytestring bytestring case-insensitive containers + cryptohash-md5 filepath HUnit inspection-testing postgresql-libpq + tasty tasty-golden tasty-hunit text time-compat vector + ]; + benchmarkHaskellDepends = [ base vector ]; + description = "Mid-Level PostgreSQL client library"; + license = lib.licenses.bsd3; + maintainers = [ lib.maintainers.maralorn ]; + }) {}; + + "postgresql-simple_0_6_5" = callPackage ({ mkDerivation, aeson, attoparsec, base, base16-bytestring , bytestring, bytestring-builder, case-insensitive, containers , cryptohash-md5, filepath, hashable, HUnit, inspection-testing @@ -226433,6 +225746,7 @@ self: { benchmarkHaskellDepends = [ base vector ]; description = "Mid-Level PostgreSQL client library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.maralorn ]; }) {}; @@ -226519,7 +225833,9 @@ self: { testHaskellDepends = [ base bytestring hspec postgresql-simple ]; description = "PostgreSQL Schema Migrations"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "migrate"; + broken = true; }) {}; "postgresql-simple-named" = callPackage @@ -226630,8 +225946,8 @@ self: { pname = "postgresql-simple-url"; version = "0.2.1.0"; sha256 = "1jg9gvpidrfy2hqixwqsym1l1mnkafmxwq58jpbzdmrbvryga1qk"; - revision = "5"; - editedCabalFile = "17l5iq6c4yjw3gswgav398cbih5105m05ak68kdibv6jjazkqw7p"; + revision = "6"; + editedCabalFile = "1pvfb61ys58s66dass8qfaxrd4pbkbk8hsbrijds6gybcx3a7nhy"; libraryHaskellDepends = [ base network-uri postgresql-simple split ]; @@ -226676,8 +225992,6 @@ self: { ]; description = "a transactional monad on top of postgresql-simple"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "postgresql-tx" = callPackage @@ -226700,6 +226014,8 @@ self: { libraryHaskellDepends = [ base monad-logger postgresql-tx ]; description = "postgresql-tx interfacing for use with monad-logger"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "postgresql-tx-query" = callPackage @@ -226754,7 +226070,6 @@ self: { description = "postgresql-tx interfacing for use with squeal-postgresql"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "postgresql-tx-squeal-compat-simple" = callPackage @@ -226780,8 +226095,8 @@ self: { }: mkDerivation { pname = "postgresql-typed"; - version = "0.6.2.1"; - sha256 = "15zrsg2zz2jgzb1v0g13c98hfrmnkcjakqpdy2zhbfr6ibivlhkx"; + version = "0.6.2.2"; + sha256 = "0khc6bc1gvlhvrmpgj4ilazimwpjvd2p83lfbbpip9dpj2b5h2ri"; libraryHaskellDepends = [ aeson array attoparsec base binary bytestring containers cryptonite data-default haskell-src-meta HDBC memory network old-locale @@ -226859,9 +226174,7 @@ self: { ]; description = "REST API for any Postgres database"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "postgrest"; - broken = true; }) {}; "postgrest-ws" = callPackage @@ -227167,6 +226480,8 @@ self: { ]; description = "PowerDNS API bindings for api/v1"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "powermate" = callPackage @@ -227757,8 +227072,8 @@ self: { }: mkDerivation { pname = "prelate"; - version = "0.2.0.0"; - sha256 = "03620awa3yh3jfzqzr2i6gbhg4wfq33v7m42rzwnr6j83pkd59im"; + version = "0.3.0.0"; + sha256 = "13qrk305k5mgpkhjhk92zs0rp3y68k7rhj5d3cqj785bvyvpz3wh"; libraryHaskellDepends = [ aeson base exon extra generic-lens incipit microlens microlens-ghc polysemy-chronos polysemy-conc polysemy-log polysemy-process @@ -228108,6 +227423,8 @@ self: { ]; description = "Pretty-printing library"; license = "GPL"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "pretty-diff" = callPackage @@ -228289,31 +227606,6 @@ self: { }) {}; "pretty-simple" = callPackage - ({ mkDerivation, base, Cabal, cabal-doctest, containers, criterion - , doctest, Glob, mtl, prettyprinter, prettyprinter-ansi-terminal - , QuickCheck, template-haskell, text, transformers - }: - mkDerivation { - pname = "pretty-simple"; - version = "4.0.0.0"; - sha256 = "1srvx854ml2gffnkxr2fm12xk8syjsk078rfzrq0a3idwgv46myw"; - isLibrary = true; - isExecutable = true; - setupHaskellDepends = [ base Cabal cabal-doctest ]; - libraryHaskellDepends = [ - base containers mtl prettyprinter prettyprinter-ansi-terminal text - transformers - ]; - testHaskellDepends = [ - base doctest Glob QuickCheck template-haskell - ]; - benchmarkHaskellDepends = [ base criterion text ]; - description = "pretty printer for data types with a 'Show' instance"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.cdepillabout ]; - }) {}; - - "pretty-simple_4_1_2_0" = callPackage ({ mkDerivation, base, Cabal, cabal-doctest, containers, criterion , doctest, Glob, mtl, optparse-applicative, prettyprinter , prettyprinter-ansi-terminal, QuickCheck, template-haskell, text @@ -228337,7 +227629,6 @@ self: { benchmarkHaskellDepends = [ base criterion text ]; description = "pretty printer for data types with a 'Show' instance"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "pretty-simple"; maintainers = [ lib.maintainers.cdepillabout ]; }) {}; @@ -228676,8 +227967,6 @@ self: { benchmarkHaskellDepends = [ base criterion ghc-prim spoon ]; description = "Catch errors thrown from pure computations using primops"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "prim-uniq" = callPackage @@ -228913,7 +228202,6 @@ self: { description = "containers backed by arrays"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "primitive-convenience" = callPackage @@ -229042,16 +228330,20 @@ self: { }: mkDerivation { pname = "primitive-sort"; - version = "0.1.1.0"; - sha256 = "0ixx8cvjzsl93lr6pxppyiv12rgwaxh5xv4m56f6b81cxqdx97f2"; + version = "0.1.2.0"; + sha256 = "0nalkfycg9fpvwi8h2a4k31wmmn1ny16b43kj75gxcpmbc4x6azz"; libraryHaskellDepends = [ base contiguous ghc-prim primitive ]; testHaskellDepends = [ base containers doctest HUnit primitive QuickCheck smallcheck tasty tasty-hunit tasty-quickcheck tasty-smallcheck ]; - benchmarkHaskellDepends = [ base gauge ghc-prim primitive random ]; + benchmarkHaskellDepends = [ + base contiguous gauge ghc-prim primitive random + ]; description = "Sort primitive arrays"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "primitive-stablename" = callPackage @@ -229438,8 +228730,8 @@ self: { ({ mkDerivation, base, containers, hspec, random }: mkDerivation { pname = "prob"; - version = "0.1.0.0"; - sha256 = "1y0xfcjpkg72nj3rp6pfwjxdwqf74hdi30h1ih198kkpa0nsazyh"; + version = "0.1.1"; + sha256 = "0ra2g9l5lir5j0z9c2j8n4gqyxdfkj8v4qdbm7z6b6l9ii2lq8cn"; libraryHaskellDepends = [ base containers random ]; testHaskellDepends = [ base hspec ]; description = "Discrete probability monad"; @@ -229690,7 +228982,6 @@ self: { libraryHaskellDepends = [ base directory mmsyn3 process sublists ]; description = "A test suite for the complex multi files multi level processment"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "process-streaming" = callPackage @@ -230249,6 +229540,7 @@ self: { description = "A project initialization library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "project-m36" = callPackage @@ -230325,6 +229617,7 @@ self: { description = "Relational Algebra Engine"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "project-template" = callPackage @@ -230582,6 +229875,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "test"; + broken = true; }) {}; "prometheus-metrics-ghc" = callPackage @@ -230614,6 +229908,8 @@ self: { ]; description = "Export metrics from /proc for the current process"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "prometheus-wai-middleware" = callPackage @@ -230694,6 +229990,29 @@ self: { broken = true; }) {}; + "proof-assistant-bot" = callPackage + ({ mkDerivation, Agda, async, base, bytestring, dhall, directory + , filepath, mtl, process, rzk, stm, telegram-bot-simple, text, unix + , unordered-containers + }: + mkDerivation { + pname = "proof-assistant-bot"; + version = "0.2.0"; + sha256 = "1sks81xaxzz76ajcki43jy7a95d6lc5ijj3xgl5slmjd5m4fmwyc"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + Agda async base bytestring dhall directory filepath mtl process rzk + stm telegram-bot-simple text unix unordered-containers + ]; + executableHaskellDepends = [ base ]; + description = "Telegram bot for proof assistants"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "proof-assistant-bot"; + broken = true; + }) {rzk = null;}; + "proof-combinators" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -230712,8 +230031,8 @@ self: { }: mkDerivation { pname = "prop-unit"; - version = "0.1.0"; - sha256 = "1sz04samdhac9czcym2rra5fgncccvj6hjsymljxsvgcs2h7429i"; + version = "0.1.1"; + sha256 = "0adxa0fkrvp9jgcqv4919g59alc4a6p9lnv3r647hf4mjlywgvkg"; libraryHaskellDepends = [ base hedgehog tasty tasty-hedgehog ]; testHaskellDepends = [ base hedgehog tasty tasty-hedgehog tasty-hunit @@ -230757,8 +230076,8 @@ self: { }: mkDerivation { pname = "propellor"; - version = "5.14.1"; - sha256 = "1lbqd4mj8mjk1l2pcqjw214w9znnp9mbs8z7dxi5spd819vw0d2d"; + version = "5.15"; + sha256 = "0106ayiadnam0mz1836la0fya4s82cv591r3vc6cdyafzpjzjphk"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -230939,6 +230258,8 @@ self: { libraryToolDepends = [ c2hs ]; description = "Simple audio library for Windows, Linux, OSX"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {libpulse = null; libpulse-simple = null; inherit (pkgs) libpulseaudio;}; @@ -230956,6 +230277,8 @@ self: { libraryToolDepends = [ c2hs ]; description = "Simple audio library for SDL"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) SDL2;}; "proteome" = callPackage @@ -231256,6 +230579,23 @@ self: { license = lib.licenses.bsd3; }) {}; + "protobuf-builder" = callPackage + ({ mkDerivation, array-builder, base, bytebuild, byteslice + , bytestring, natural-arithmetic, primitive, run-st, text-short + , zigzag + }: + mkDerivation { + pname = "protobuf-builder"; + version = "0.1.0.0"; + sha256 = "0qv7vhg250sfah13likpj4jqkldr8lqvcxvlajp2cx3k69sfv1f9"; + libraryHaskellDepends = [ + array-builder base bytebuild byteslice bytestring + natural-arithmetic primitive run-st text-short zigzag + ]; + description = "Slow protobuf implementation"; + license = lib.licenses.bsd3; + }) {}; + "protobuf-native" = callPackage ({ mkDerivation, base, bytestring, cereal, cplusplus-th, criterion , hprotoc-fork, protobuf, protocol-buffers-fork, QuickCheck @@ -231335,6 +230675,8 @@ self: { ]; description = "Parse Google Protocol Buffer specifications"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "protocol-buffers-descriptor" = callPackage @@ -231351,6 +230693,7 @@ self: { ]; description = "Text.DescriptorProto.Options and code generated from the Google Protocol Buffer specification"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "protocol-buffers-descriptor-fork" = callPackage @@ -231626,7 +230969,9 @@ self: { ]; description = "Prune unused Haskell dependencies"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "prune-juice"; + broken = true; }) {}; "psc-ide" = callPackage @@ -231721,6 +231066,8 @@ self: { ]; description = "Yet another custom Prelude"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "psql" = callPackage @@ -231979,6 +231326,8 @@ self: { ]; description = "Pipe stdin to a redis pub/sub channel"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "publicsuffix" = callPackage @@ -232115,7 +231464,6 @@ self: { description = "A library for Google/SixApart pubsub hub interaction"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "puffytools" = callPackage @@ -232550,75 +231898,70 @@ self: { }) {}; "purescript" = callPackage - ({ mkDerivation, aeson, aeson-better-errors, aeson-pretty - , ansi-terminal, ansi-wl-pprint, array, base, blaze-html - , bower-json, boxes, bytestring, Cabal, cborg, cheapskate, clock - , containers, cryptonite, data-ordlist, deepseq, directory, dlist - , edit-distance, exceptions, file-embed, filepath, fsnotify - , generic-random, gitrev, Glob, happy, haskeline, hspec - , hspec-discover, http-types, HUnit, language-javascript, lens - , lifted-async, lifted-base, memory, monad-control, monad-logger - , monoidal-containers, mtl, network, newtype, optparse-applicative - , parallel, parsec, pattern-arrows, process, protolude, QuickCheck - , regex-base, regex-tdfa, safe, scientific, semialign, semigroups - , serialise, sourcemap, split, stm, stringsearch, syb, text, these - , time, transformers, transformers-base, transformers-compat - , typed-process, unordered-containers, utf8-string, vector - , witherable + ({ mkDerivation, aeson, aeson-better-errors, ansi-terminal + , ansi-wl-pprint, array, base, blaze-html, bower-json, boxes + , bytestring, Cabal, cborg, cheapskate, clock, containers + , cryptonite, data-ordlist, deepseq, directory, dlist + , edit-distance, exceptions, file-embed, filepath, generic-random + , gitrev, Glob, happy, haskeline, hspec, hspec-discover, HUnit + , language-javascript, lens, lifted-async, lifted-base, memory + , monad-control, monad-logger, monoidal-containers, mtl, network + , newtype, optparse-applicative, parallel, parsec, pattern-arrows + , process, protolude, QuickCheck, regex-base, regex-tdfa, safe + , scientific, semialign, semigroups, serialise, sourcemap, split + , stm, stringsearch, template-haskell, text, these, time + , transformers, transformers-base, typed-process, utf8-string + , vector, witherable }: mkDerivation { pname = "purescript"; - version = "0.15.6"; - sha256 = "19p8jzn76vc5w4g95y36vfhih1s5kq12dvczvfb7zkmn3n6n3g3m"; + version = "0.15.7"; + sha256 = "1krjkgmxpfqf5a1jqs7qbg6r7ball1464zw6vgrdfzl9057c6l4f"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson aeson-better-errors aeson-pretty ansi-terminal array base - blaze-html bower-json boxes bytestring Cabal cborg cheapskate clock - containers cryptonite data-ordlist deepseq directory dlist - edit-distance file-embed filepath fsnotify Glob haskeline - language-javascript lens lifted-async lifted-base memory - monad-control monad-logger monoidal-containers mtl parallel parsec - pattern-arrows process protolude regex-tdfa safe scientific - semialign semigroups serialise sourcemap split stm stringsearch syb - text these time transformers transformers-base transformers-compat - typed-process unordered-containers utf8-string vector witherable + aeson aeson-better-errors ansi-terminal array base blaze-html + bower-json boxes bytestring Cabal cborg cheapskate clock containers + cryptonite data-ordlist deepseq directory dlist edit-distance + file-embed filepath Glob haskeline language-javascript lens + lifted-async lifted-base memory monad-control monad-logger + monoidal-containers mtl parallel parsec pattern-arrows process + protolude regex-tdfa safe scientific semialign semigroups serialise + sourcemap stm stringsearch template-haskell text these time + transformers transformers-base utf8-string vector witherable ]; libraryToolDepends = [ happy ]; executableHaskellDepends = [ - aeson aeson-better-errors aeson-pretty ansi-terminal ansi-wl-pprint - array base blaze-html bower-json boxes bytestring Cabal cborg - cheapskate clock containers cryptonite data-ordlist deepseq - directory dlist edit-distance exceptions file-embed filepath - fsnotify gitrev Glob haskeline http-types language-javascript lens - lifted-async lifted-base memory monad-control monad-logger - monoidal-containers mtl network optparse-applicative parallel - parsec pattern-arrows process protolude regex-tdfa safe scientific - semialign semigroups serialise sourcemap split stm stringsearch syb - text these time transformers transformers-base transformers-compat - typed-process unordered-containers utf8-string vector witherable + aeson aeson-better-errors ansi-terminal ansi-wl-pprint array base + blaze-html bower-json boxes bytestring Cabal cborg cheapskate clock + containers cryptonite data-ordlist deepseq directory dlist + edit-distance exceptions file-embed filepath gitrev Glob haskeline + language-javascript lens lifted-async lifted-base memory + monad-control monad-logger monoidal-containers mtl network + optparse-applicative parallel parsec pattern-arrows process + protolude regex-tdfa safe scientific semialign semigroups serialise + sourcemap stm stringsearch template-haskell text these time + transformers transformers-base utf8-string vector witherable ]; executableToolDepends = [ happy ]; testHaskellDepends = [ - aeson aeson-better-errors aeson-pretty ansi-terminal array base - blaze-html bower-json boxes bytestring Cabal cborg cheapskate clock - containers cryptonite data-ordlist deepseq directory dlist - edit-distance file-embed filepath fsnotify generic-random Glob - haskeline hspec HUnit language-javascript lens lifted-async - lifted-base memory monad-control monad-logger monoidal-containers - mtl newtype parallel parsec pattern-arrows process protolude - QuickCheck regex-base regex-tdfa safe scientific semialign - semigroups serialise sourcemap split stm stringsearch syb text - these time transformers transformers-base transformers-compat - typed-process unordered-containers utf8-string vector witherable + aeson aeson-better-errors ansi-terminal array base blaze-html + bower-json boxes bytestring Cabal cborg cheapskate clock containers + cryptonite data-ordlist deepseq directory dlist edit-distance + file-embed filepath generic-random Glob haskeline hspec HUnit + language-javascript lens lifted-async lifted-base memory + monad-control monad-logger monoidal-containers mtl newtype parallel + parsec pattern-arrows process protolude QuickCheck regex-base + regex-tdfa safe scientific semialign semigroups serialise sourcemap + split stm stringsearch template-haskell text these time + transformers transformers-base typed-process utf8-string vector + witherable ]; testToolDepends = [ happy hspec-discover ]; doCheck = false; description = "PureScript Programming Language Compiler"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "purs"; - broken = true; }) {}; "purescript-ast" = callPackage @@ -232636,6 +231979,8 @@ self: { ]; description = "PureScript Programming Language Abstract Syntax Tree"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "purescript-bridge" = callPackage @@ -232693,6 +232038,8 @@ self: { libraryToolDepends = [ happy ]; description = "PureScript Programming Language Concrete Syntax Tree"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "purescript-iso" = callPackage @@ -232858,7 +232205,6 @@ self: { testHaskellDepends = [ aeson base hspec ]; description = "Send push notifications to mobile iOS devices"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "sendapn"; }) {}; @@ -233176,8 +232522,6 @@ self: { ]; description = "Fast persistent vectors"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "pvss" = callPackage @@ -233369,8 +232713,6 @@ self: { ]; description = "Types and prettyprinter for the IL of the QBE compiler backend"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "qc-oi-testgenerator" = callPackage @@ -233609,7 +232951,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "qnap-decrypt"; - broken = true; }) {}; "qq-literals" = callPackage @@ -233695,6 +233036,8 @@ self: { libraryHaskellDepends = [ array base containers mtl vector ]; description = "QR Code library in pure Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "qrcode-core" = callPackage @@ -233776,6 +233119,7 @@ self: { librarySystemDepends = [ qtbase ]; description = "Qt bindings for Haskell - C++ library"; license = lib.licenses.lgpl3Only; + hydraPlatforms = lib.platforms.none; }) {inherit (pkgs.qt5) qtbase;}; "qtah-examples" = callPackage @@ -233815,6 +233159,7 @@ self: { executableHaskellDepends = [ base ]; description = "Generator for Qtah Qt bindings"; license = lib.licenses.lgpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "qtah-generator"; }) {}; @@ -233883,6 +233228,8 @@ self: { testHaskellDepends = [ base text ]; description = "GHC plugin to automatically insert qualified imports"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "quandl-api" = callPackage @@ -233923,7 +233270,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "example"; - broken = true; }) {}; "quantification" = callPackage @@ -234057,7 +233403,6 @@ self: { license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "qudb"; - broken = true; }) {}; "quenya-verb" = callPackage @@ -234252,7 +233597,6 @@ self: { testHaskellDepends = [ base bytestring tasty tasty-hunit ]; description = "queue sheet utility"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "queue-sheet"; }) {}; @@ -234368,6 +233712,7 @@ self: { testHaskellDepends = [ base ]; description = "quick & easy benchmarking of command-line programs"; license = "GPL"; + hydraPlatforms = lib.platforms.none; mainProgram = "quickbench"; }) {}; @@ -234388,6 +233733,7 @@ self: { description = "QuickBooks API binding"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "quickcheck-arbitrary-adt" = callPackage @@ -234480,7 +233826,6 @@ self: { sha256 = "0qdjls949kmcv8wj3a27p4dz8nb1dq4i99zizkw7qyqn47r9ccxd"; libraryHaskellDepends = [ base QuickCheck unfoldable-restricted ]; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "quickcheck-dynamic" = callPackage @@ -234563,8 +233908,8 @@ self: { }: mkDerivation { pname = "quickcheck-lockstep"; - version = "0.2.0"; - sha256 = "1vc0ry2qp4c99pql6mgb4csffsjs9qgwciz58g68wbrjqp7rgm2w"; + version = "0.2.1"; + sha256 = "1kw5bp9yih8z3z7plczwld5xdg46slylszmpd63d2fiq2fx7ii7r"; libraryHaskellDepends = [ base constraints containers mtl QuickCheck quickcheck-dynamic ]; @@ -234574,8 +233919,6 @@ self: { ]; description = "Library for lockstep-style testing with 'quickcheck-dynamic'"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "quickcheck-poly" = callPackage @@ -234877,6 +234220,7 @@ self: { description = "Utilities for using WebDriver with QuickCheck"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "quickcheck-with-counterexamples" = callPackage @@ -235607,8 +234951,8 @@ self: { }: mkDerivation { pname = "raaz"; - version = "0.3.6"; - sha256 = "0h6jc7093r9z729pmy0p9rsyg6nz3yksrkmj2pn6n6ddyw0cfp21"; + version = "0.3.7"; + sha256 = "1sx2p1xqash0737z0s5hg2848j9zf02941ksmwd7dlmfaz35x57h"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -235767,6 +235111,8 @@ self: { ]; description = "Radix tree data structive over short byte-strings"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "radixtree" = callPackage @@ -236172,7 +235518,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "randfile"; - broken = true; }) {}; "rando" = callPackage @@ -236331,7 +235676,6 @@ self: { description = "Additional functions for random values"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "random-fu" = callPackage @@ -236420,6 +235764,8 @@ self: { ]; description = "Generic basis for random number generators"; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "random-stream" = callPackage @@ -236449,6 +235795,8 @@ self: { ]; description = "Generate a random base 16, 58, or 64 string"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "random-strings" = callPackage @@ -236615,7 +235963,6 @@ self: { testHaskellDepends = [ base doctest typecheck-plugin-nat-simple ]; description = "The list like structure whose length or range of length can be specified"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "rangemin" = callPackage @@ -236702,27 +236049,6 @@ self: { }) {}; "rank2classes" = callPackage - ({ mkDerivation, base, Cabal, cabal-doctest, distributive, doctest - , markdown-unlit, tasty, tasty-hunit, template-haskell - , transformers - }: - mkDerivation { - pname = "rank2classes"; - version = "1.4.4"; - sha256 = "0c220gxk7dzn2gb0g34bvjjwjw5ir5i8qa089mcpyqqaba8jzxaw"; - setupHaskellDepends = [ base Cabal cabal-doctest ]; - libraryHaskellDepends = [ - base distributive template-haskell transformers - ]; - testHaskellDepends = [ - base distributive doctest tasty tasty-hunit - ]; - testToolDepends = [ markdown-unlit ]; - description = "standard type constructor class hierarchy, only with methods of rank 2 types"; - license = lib.licenses.bsd3; - }) {}; - - "rank2classes_1_4_6" = callPackage ({ mkDerivation, base, Cabal, cabal-doctest, data-functor-logistic , distributive, doctest, markdown-unlit, tasty, tasty-hunit , template-haskell, transformers @@ -236742,7 +236068,6 @@ self: { testToolDepends = [ markdown-unlit ]; description = "standard type constructor class hierarchy, only with methods of rank 2 types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "rapid" = callPackage @@ -237208,8 +236533,8 @@ self: { }: mkDerivation { pname = "rattletrap"; - version = "11.2.4"; - sha256 = "0cqk2sfh4brm94zvy3d23khxl2x7zrjc0c62ww96549qpvp8za4y"; + version = "11.2.14"; + sha256 = "0r879vbdhv77l14wzv03s8hlhmmzzfl6igkwnclr9lq8ncbafrxm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -237225,14 +236550,14 @@ self: { broken = true; }) {}; - "rattletrap_11_2_14" = callPackage + "rattletrap_12_0_0" = callPackage ({ mkDerivation, aeson, aeson-pretty, array, base, bytestring , containers, filepath, http-client, http-client-tls, text }: mkDerivation { pname = "rattletrap"; - version = "11.2.14"; - sha256 = "0r879vbdhv77l14wzv03s8hlhmmzzfl6igkwnclr9lq8ncbafrxm"; + version = "12.0.0"; + sha256 = "0l20d9m84mn6gkmi7hii0q80rs7nzhbmwp1dx3i5jkww42ixbyfi"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -237359,6 +236684,19 @@ self: { license = lib.licenses.bsd3; }) {}; + "raylib-imgui" = callPackage + ({ mkDerivation, base, h-raylib }: + mkDerivation { + pname = "raylib-imgui"; + version = "4.5.0.9"; + sha256 = "1b2363czcxzg22d5mjr6y480lzv82v0hkyabq7821zgb9y5v3879"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base h-raylib ]; + description = "Haskell bindings for rlImGui"; + license = lib.licenses.asl20; + }) {}; + "raz" = callPackage ({ mkDerivation, base, containers, criterion, deepseq, MonadRandom , random, transformers @@ -237538,8 +236876,6 @@ self: { ]; description = "Representation and Incremental Processing of RDF Data"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "rdf4h" = callPackage @@ -238206,6 +237542,8 @@ self: { ]; description = "Vinyl-based reader-like monad composition"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "readline" = callPackage @@ -238471,27 +237809,6 @@ self: { }) {}; "rebase" = callPackage - ({ mkDerivation, base, bifunctors, bytestring, comonad, containers - , contravariant, deepseq, dlist, either, groups, hashable - , invariant, mtl, profunctors, scientific, selective, semigroupoids - , stm, text, time, time-compat, transformers, unordered-containers - , uuid-types, vector, vector-instances, void - }: - mkDerivation { - pname = "rebase"; - version = "1.15.0.3"; - sha256 = "1dck3800mz307jriz6mcv2dn2lwglgvlpiiy759xn56774h503zj"; - libraryHaskellDepends = [ - base bifunctors bytestring comonad containers contravariant deepseq - dlist either groups hashable invariant mtl profunctors scientific - selective semigroupoids stm text time time-compat transformers - unordered-containers uuid-types vector vector-instances void - ]; - description = "A more progressive alternative to the \"base\" package"; - license = lib.licenses.mit; - }) {}; - - "rebase_1_16_1" = callPackage ({ mkDerivation, base, bifunctors, bytestring, comonad, containers , contravariant, deepseq, dlist, either, groups, hashable , invariant, mtl, profunctors, scientific, selective, semigroupoids @@ -238512,7 +237829,6 @@ self: { ]; description = "A more progressive alternative to the \"base\" package"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "rebindable" = callPackage @@ -238703,8 +238019,6 @@ self: { ]; testHaskellDepends = [ base time ]; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "record-operations" = callPackage @@ -238806,6 +238120,8 @@ self: { ]; description = "Record subtyping and record utilities with generics-sop"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "records-th" = callPackage @@ -238894,8 +238210,6 @@ self: { ]; description = "Amateur addenda to recursion-schemes"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "recursion-schemes-ix" = callPackage @@ -238913,7 +238227,6 @@ self: { description = "Recursion schemes over indexed Functors"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "recursive-line-count" = callPackage @@ -239121,6 +238434,24 @@ self: { license = lib.licenses.mit; }) {}; + "redis-glob" = callPackage + ({ mkDerivation, ascii-char, ascii-superset, base, bytestring + , hspec, megaparsec, QuickCheck + }: + mkDerivation { + pname = "redis-glob"; + version = "0.1.0.2"; + sha256 = "0lm0bnl562bvxl3mdh0qkjl6jj10zglmyg4qwlylx3qicpdqf4lw"; + libraryHaskellDepends = [ + ascii-char ascii-superset base bytestring megaparsec + ]; + testHaskellDepends = [ + ascii-char ascii-superset base bytestring hspec QuickCheck + ]; + description = "Specify valid redis globs"; + license = lib.licenses.bsd3; + }) {}; + "redis-hs" = callPackage ({ mkDerivation, base, bytestring, network, utf8-string }: mkDerivation { @@ -239160,6 +238491,7 @@ self: { ]; description = "Yet another redis client"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; }) {}; "redis-job-queue" = callPackage @@ -239232,6 +238564,7 @@ self: { ]; description = "Combine redis caching and haxl"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "redland" = callPackage @@ -239390,6 +238723,8 @@ self: { ]; description = "Extra stuff for mutable references"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ref-fd" = callPackage @@ -239516,23 +238851,6 @@ self: { }) {}; "refined" = callPackage - ({ mkDerivation, aeson, base, bytestring, deepseq, exceptions - , hashable, mtl, QuickCheck, template-haskell, text, these-skinny - }: - mkDerivation { - pname = "refined"; - version = "0.6.3"; - sha256 = "1fpbwzr3q9fmkdghpap0zm56bi9wj6n6k0ys5b8ci5xhz25mrd4g"; - libraryHaskellDepends = [ - aeson base bytestring deepseq exceptions hashable mtl QuickCheck - template-haskell text these-skinny - ]; - testHaskellDepends = [ base QuickCheck ]; - description = "Refinement types with static and runtime checking"; - license = lib.licenses.mit; - }) {}; - - "refined_0_8" = callPackage ({ mkDerivation, aeson, base, bytestring, deepseq, exceptions , hashable, mtl, QuickCheck, template-haskell, text, these-skinny }: @@ -239547,7 +238865,6 @@ self: { testHaskellDepends = [ base QuickCheck ]; description = "Refinement types with static and runtime checking"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "refined-http-api-data" = callPackage @@ -239638,46 +238955,6 @@ self: { }) {}; "reflex" = callPackage - ({ mkDerivation, base, bifunctors, comonad, constraints - , constraints-extras, containers, criterion, data-default, deepseq - , dependent-map, dependent-sum, directory, exception-transformers - , filemanip, filepath, haskell-src-exts, haskell-src-meta, hlint - , hspec, lens, loch-th, MemoTrie, mmorph, monad-control - , monoidal-containers, mtl, patch, prim-uniq, primitive, process - , proctest, profunctors, random, ref-tf, reflection, semialign - , semigroupoids, split, stm, syb, template-haskell, text, these - , these-lens, time, transformers, unbounded-delays, witherable - }: - mkDerivation { - pname = "reflex"; - version = "0.8.2.0"; - sha256 = "1hvagxcs413bqairxf77vp19484mxnbfckhd44wv22ncwfh5mq6d"; - revision = "3"; - editedCabalFile = "1sax4fx7pgn85dvih4y6mnvhdq8nssan1rcys5kdfhirnr4vgn1m"; - libraryHaskellDepends = [ - base bifunctors comonad constraints constraints-extras containers - data-default dependent-map dependent-sum exception-transformers - haskell-src-exts haskell-src-meta lens MemoTrie mmorph - monad-control monoidal-containers mtl patch prim-uniq primitive - profunctors random ref-tf reflection semialign semigroupoids stm - syb template-haskell these time transformers unbounded-delays - witherable - ]; - testHaskellDepends = [ - base bifunctors constraints constraints-extras containers deepseq - dependent-map dependent-sum directory filemanip filepath hlint - hspec lens monoidal-containers mtl patch proctest ref-tf semialign - split text these these-lens transformers witherable - ]; - benchmarkHaskellDepends = [ - base containers criterion deepseq dependent-map dependent-sum - loch-th mtl primitive process ref-tf split stm time transformers - ]; - description = "Higher-order Functional Reactive Programming"; - license = lib.licenses.bsd3; - }) {}; - - "reflex_0_8_2_1" = callPackage ({ mkDerivation, base, bifunctors, commutative-semigroups, comonad , constraints, constraints-extras, containers, criterion , data-default, deepseq, dependent-map, dependent-sum, directory @@ -239691,8 +238968,49 @@ self: { }: mkDerivation { pname = "reflex"; - version = "0.8.2.1"; - sha256 = "1w8smiwn86cxb3fsfgyzxpk11hryhxi6g94m52grmnx6vhc7sm6v"; + version = "0.8.2.2"; + sha256 = "1add5bcsyq2k02w2q0ifbyfcvcic1hmjdbgxg8ajd5riam0lhb16"; + libraryHaskellDepends = [ + base bifunctors commutative-semigroups comonad constraints + constraints-extras containers data-default dependent-map + dependent-sum exception-transformers haskell-src-exts + haskell-src-meta lens MemoTrie mmorph monad-control + monoidal-containers mtl patch prim-uniq primitive profunctors + random ref-tf reflection semialign semigroupoids stm syb + template-haskell these time transformers unbounded-delays + witherable + ]; + testHaskellDepends = [ + base bifunctors commutative-semigroups constraints + constraints-extras containers deepseq dependent-map dependent-sum + directory filemanip filepath hlint hspec lens monoidal-containers + mtl patch proctest ref-tf semialign split text these these-lens + transformers witherable + ]; + benchmarkHaskellDepends = [ + base containers criterion deepseq dependent-map dependent-sum + loch-th mtl primitive process ref-tf split stm time transformers + ]; + description = "Higher-order Functional Reactive Programming"; + license = lib.licenses.bsd3; + }) {}; + + "reflex_0_9_0_0" = callPackage + ({ mkDerivation, base, bifunctors, commutative-semigroups, comonad + , constraints, constraints-extras, containers, criterion + , data-default, deepseq, dependent-map, dependent-sum, directory + , exception-transformers, filemanip, filepath, haskell-src-exts + , haskell-src-meta, hlint, hspec, lens, loch-th, MemoTrie, mmorph + , monad-control, monoidal-containers, mtl, patch, prim-uniq + , primitive, process, proctest, profunctors, random, ref-tf + , reflection, semialign, semigroupoids, split, stm, syb + , template-haskell, text, these, these-lens, time, transformers + , unbounded-delays, witherable + }: + mkDerivation { + pname = "reflex"; + version = "0.9.0.0"; + sha256 = "0g22b2bkv6l2m7aiz7kqi3x572qhzy0hikvpysrq2jffl02by0lm"; libraryHaskellDepends = [ base bifunctors commutative-semigroups comonad constraints constraints-extras containers data-default dependent-map @@ -239755,6 +239073,8 @@ self: { ]; description = "Reflex bindings for TCP sockets"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "reflex-backend-wai" = callPackage @@ -239878,47 +239198,6 @@ self: { }) {}; "reflex-dom-core" = callPackage - ({ mkDerivation, aeson, async, base, bifunctors, bimap - , blaze-builder, bytestring, case-insensitive, chrome-test-utils - , constraints, constraints-extras, containers, contravariant - , data-default, dependent-map, dependent-sum - , dependent-sum-template, directory, exception-transformers - , exceptions, filepath, ghcjs-dom, hlint, hspec, hspec-core - , hspec-webdriver, http-types, HUnit, jsaddle, jsaddle-warp - , keycode, lens, lifted-base, monad-control, mtl, network - , network-uri, primitive, process, random, ref-tf, reflex - , semialign, semigroups, silently, stm, template-haskell, temporary - , text, these, transformers, unix, wai, wai-websockets, warp - , webdriver, websockets, which, zenc - }: - mkDerivation { - pname = "reflex-dom-core"; - version = "0.7.0.1"; - sha256 = "0lhi04i5wfkgblcifah6znkwi6v7294pna48527ns74f0bjc7yy3"; - libraryHaskellDepends = [ - aeson base bifunctors bimap blaze-builder bytestring - case-insensitive constraints containers contravariant data-default - dependent-map dependent-sum dependent-sum-template directory - exception-transformers ghcjs-dom jsaddle keycode lens monad-control - mtl network-uri primitive random ref-tf reflex semialign semigroups - stm template-haskell text these transformers unix zenc - ]; - testHaskellDepends = [ - aeson async base bytestring chrome-test-utils constraints - constraints-extras containers dependent-map dependent-sum - dependent-sum-template directory exceptions filepath ghcjs-dom - hlint hspec hspec-core hspec-webdriver http-types HUnit jsaddle - jsaddle-warp lens lifted-base network process random ref-tf reflex - silently temporary text wai wai-websockets warp webdriver - websockets which - ]; - description = "Functional Reactive Web Apps with Reflex"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {chrome-test-utils = null;}; - - "reflex-dom-core_0_7_0_2" = callPackage ({ mkDerivation, aeson, async, base, bifunctors, bimap , blaze-builder, bytestring, case-insensitive, chrome-test-utils , commutative-semigroups, constraints, constraints-extras @@ -240016,25 +239295,6 @@ self: { }) {}; "reflex-dom-pandoc" = callPackage - ({ mkDerivation, aeson, base, binary, bytestring, clay, constraints - , containers, data-default, lens, lens-aeson, modern-uri, mtl - , pandoc-types, ref-tf, reflex, reflex-dom-core, safe, skylighting - , text, time - }: - mkDerivation { - pname = "reflex-dom-pandoc"; - version = "0.6.0.0"; - sha256 = "0dnsvv883jpkflh0319lr52v69ki3vywnrm28zd6m7r8k336mc18"; - libraryHaskellDepends = [ - aeson base binary bytestring clay constraints containers - data-default lens lens-aeson modern-uri mtl pandoc-types ref-tf - reflex reflex-dom-core safe skylighting text time - ]; - description = "Render Pandoc documents to HTML using reflex-dom"; - license = lib.licenses.bsd3; - }) {}; - - "reflex-dom-pandoc_1_0_0_0" = callPackage ({ mkDerivation, aeson, base, binary, bytestring, constraints , containers, data-default, lens, lens-aeson, mtl, pandoc-types , ref-tf, reflex, reflex-dom-core, safe, skylighting, text, time @@ -240050,7 +239310,6 @@ self: { ]; description = "Render Pandoc documents to HTML using reflex-dom"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "reflex-dom-retractable" = callPackage @@ -240171,8 +239430,8 @@ self: { }: mkDerivation { pname = "reflex-gadt-api"; - version = "0.2.2.0"; - sha256 = "1ras7jl1j90a4zd9bnw4x31ykk0ww373kjpkd9sq909i73a7xzxl"; + version = "0.2.2.1"; + sha256 = "042dad8gilpzn1ng4ck5mmca9q257vi9317xxr0in0sp30sn1g11"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -240187,7 +239446,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "readme"; - broken = true; }) {}; "reflex-ghci" = callPackage @@ -240198,8 +239456,8 @@ self: { }: mkDerivation { pname = "reflex-ghci"; - version = "0.1.5.2"; - sha256 = "18w9n6sm9b0ykjxqa800228b7s3y6gg8ckl6jnms3860p0cskpqq"; + version = "0.1.5.4"; + sha256 = "0qp50yscpik3hb2dhga4x9w40vji34hklvcjksnd1a1d512jh485"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -240327,6 +239585,8 @@ self: { description = "Reflex bindings for libtelnet"; license = lib.licenses.gpl3Plus; platforms = lib.platforms.linux; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "reflex-localize" = callPackage @@ -240405,8 +239665,8 @@ self: { }: mkDerivation { pname = "reflex-process"; - version = "0.3.1.1"; - sha256 = "15f9qn5rx6dwjnkhg5szhagxsj7vnh3bh4ad7j4jsi87m627mlj2"; + version = "0.3.1.2"; + sha256 = "0casszkah49b6n36ymh5ffyhbz1161z5vrlpwisn1r1wb68idm3j"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -240494,8 +239754,8 @@ self: { }: mkDerivation { pname = "reflex-vty"; - version = "0.3.0.0"; - sha256 = "1c4v2i54i0a4dq8ywkxax33wz4wzyf4hw5vn2s5hy75m78hq8g6i"; + version = "0.3.1.1"; + sha256 = "0yzp0lvhadh6164k8lmm5464r3x72951vvg4ii4kf848bjxh7iw6"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -240666,8 +239926,8 @@ self: { }: mkDerivation { pname = "refurb"; - version = "0.2.3.0"; - sha256 = "09p9i0l59f34k12pbxvi50bxpj2d864n96fr79mq41xm0bhygsjb"; + version = "0.3.0.2"; + sha256 = "09yzk37f2sbmygva12splnxj3z6sy35mz9b6s7w82s1jbvy16zgr"; libraryHaskellDepends = [ ansi-wl-pprint base bytestring classy-prelude composite-base composite-opaleye dlist exceptions fast-logger lens monad-control @@ -240685,6 +239945,7 @@ self: { description = "Tools for maintaining a database"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "reg-alloc" = callPackage @@ -240785,8 +240046,8 @@ self: { pname = "regex-applicative-text"; version = "0.1.0.1"; sha256 = "1ng2qhk4mvpzl8fx91ig7ldv09v9aqdsvn6yl9yjapc6h0ghb4xh"; - revision = "6"; - editedCabalFile = "16a2d8d84gzbjbvs7pc7sz5bi7rz2s5c57gkwi0vf5lmscgjy25h"; + revision = "7"; + editedCabalFile = "0v4k5hvqcabgiiycn4xayg9kahwifqg4nc0m1wkm3ixcywwg8i88"; libraryHaskellDepends = [ base regex-applicative text ]; description = "regex-applicative on text"; license = lib.licenses.bsd3; @@ -241120,9 +240381,7 @@ self: { testHaskellDepends = [ base bytestring tasty tasty-hunit ]; description = "Bindings to Rust's regex library"; license = lib.licenses.agpl3Only; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.sternenseemann ]; - broken = true; }) {inherit (pkgs) rure;}; "regex-tdfa" = callPackage @@ -241546,6 +240805,37 @@ self: { broken = true; }) {}; + "registry_0_6_0_0" = callPackage + ({ mkDerivation, async, base, bytestring, containers, directory + , exceptions, generic-lens, hashable, hedgehog, io-memoize, mmorph + , MonadRandom, mtl, multimap, protolude, random, resourcet + , semigroupoids, semigroups, tasty, tasty-discover, tasty-hedgehog + , tasty-th, template-haskell, text, transformers-base, universum + , unliftio + }: + mkDerivation { + pname = "registry"; + version = "0.6.0.0"; + sha256 = "1nspxg5aks9ayk6jzybddr0gb2cs9mbjllvrw8q2v7145bf54b72"; + libraryHaskellDepends = [ + base containers exceptions hashable mmorph mtl multimap protolude + resourcet semigroupoids semigroups template-haskell text + transformers-base unliftio + ]; + testHaskellDepends = [ + async base bytestring containers directory exceptions generic-lens + hashable hedgehog io-memoize mmorph MonadRandom mtl multimap + protolude random resourcet semigroupoids semigroups tasty + tasty-discover tasty-hedgehog tasty-th template-haskell text + transformers-base universum unliftio + ]; + testToolDepends = [ tasty-discover ]; + description = "data structure for assembling components"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "registry-aeson" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, hedgehog , protolude, registry, registry-hedgehog, tasty, template-haskell @@ -241569,6 +240859,30 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "registry-aeson_0_3_0_0" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, hedgehog + , protolude, registry, registry-hedgehog, string-qq, tasty + , template-haskell, text, time, transformers, unordered-containers + , vector + }: + mkDerivation { + pname = "registry-aeson"; + version = "0.3.0.0"; + sha256 = "1248mszp2wcj9v2djnfliqqhkmsvixwh6j9qwcjj00wvdb7lmzad"; + libraryHaskellDepends = [ + aeson base bytestring containers protolude registry + template-haskell text transformers unordered-containers vector + ]; + testHaskellDepends = [ + aeson base bytestring containers hedgehog protolude registry + registry-hedgehog string-qq tasty template-haskell text time + transformers unordered-containers vector + ]; + description = "Aeson encoders / decoders"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "registry-hedgehog" = callPackage ({ mkDerivation, base, containers, hedgehog, mmorph, multimap , protolude, registry, tasty, tasty-discover, tasty-hedgehog @@ -241595,6 +240909,32 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "registry-hedgehog_0_8_0_0" = callPackage + ({ mkDerivation, base, containers, hedgehog, mmorph, multimap + , protolude, registry, tasty, tasty-discover, tasty-hedgehog + , tasty-th, template-haskell, text, transformers, universum + , unordered-containers + }: + mkDerivation { + pname = "registry-hedgehog"; + version = "0.8.0.0"; + sha256 = "1nf06yb4kn04b9cmfc7gs4h4b1p952if6x3wyb7ybbpjnhm2k2jw"; + libraryHaskellDepends = [ + base containers hedgehog mmorph multimap protolude registry tasty + tasty-discover tasty-hedgehog tasty-th template-haskell text + transformers universum unordered-containers + ]; + testHaskellDepends = [ + base containers hedgehog mmorph multimap protolude registry tasty + tasty-discover tasty-hedgehog tasty-th template-haskell text + transformers universum unordered-containers + ]; + testToolDepends = [ tasty-discover ]; + description = "utilities to work with Hedgehog generators and `registry`"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "registry-hedgehog-aeson" = callPackage ({ mkDerivation, aeson, base, containers, hedgehog, mmorph , multimap, protolude, registry, registry-hedgehog, scientific @@ -241623,6 +240963,34 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "registry-hedgehog-aeson_0_3_0_0" = callPackage + ({ mkDerivation, aeson, base, containers, hedgehog, mmorph + , multimap, protolude, registry, registry-hedgehog, scientific + , tasty, tasty-discover, tasty-hedgehog, tasty-th, template-haskell + , text, transformers, universum, unordered-containers, vector + }: + mkDerivation { + pname = "registry-hedgehog-aeson"; + version = "0.3.0.0"; + sha256 = "08k8vdc4hmqnsci2bvacrizlfb98a2yp7h3p5ad8dqn2yhinlbrf"; + libraryHaskellDepends = [ + aeson base containers hedgehog mmorph multimap protolude registry + scientific tasty tasty-discover tasty-hedgehog tasty-th + template-haskell text transformers universum unordered-containers + vector + ]; + testHaskellDepends = [ + aeson base containers hedgehog mmorph multimap protolude registry + registry-hedgehog scientific tasty tasty-discover tasty-hedgehog + tasty-th template-haskell text transformers universum + unordered-containers vector + ]; + testToolDepends = [ tasty-discover ]; + description = "Hedgehog generators for Aeson"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "registry-messagepack" = callPackage ({ mkDerivation, base, containers, msgpack, protolude, registry , registry-hedgehog, tasty, template-haskell, text, time @@ -241630,8 +240998,8 @@ self: { }: mkDerivation { pname = "registry-messagepack"; - version = "0.3.1.0"; - sha256 = "0v1cwgcvs31vpwxpbrbbhfvql7ch99ifs47008wrcdvmahb9h9qz"; + version = "0.4.0.0"; + sha256 = "0xqjw7cav0asdbfar5b60vf785mqqjzaffs8pi7addjk2dyd10dx"; libraryHaskellDepends = [ base containers msgpack protolude registry template-haskell text transformers vector @@ -241670,6 +241038,31 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "registry-options_0_2_0_0" = callPackage + ({ mkDerivation, base, boxes, bytestring, containers, directory + , hedgehog, HsYAML, multimap, protolude, registry + , registry-hedgehog, tasty, template-haskell, text, th-lift, time + , transformers, unordered-containers, vector + }: + mkDerivation { + pname = "registry-options"; + version = "0.2.0.0"; + sha256 = "1qwiabl7w25ji2pnx2wmh57q7w0bvsdi51ibczx90xn1y4y8j6wm"; + libraryHaskellDepends = [ + base boxes bytestring containers HsYAML multimap protolude registry + template-haskell text th-lift transformers unordered-containers + vector + ]; + testHaskellDepends = [ + base boxes bytestring containers directory hedgehog HsYAML multimap + protolude registry registry-hedgehog tasty template-haskell text + th-lift time transformers unordered-containers vector + ]; + description = "application options parsing"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "regress" = callPackage ({ mkDerivation, ad, base, vector }: mkDerivation { @@ -241852,33 +241245,6 @@ self: { }) {}; "rel8" = callPackage - ({ mkDerivation, aeson, base, bifunctors, bytestring - , case-insensitive, comonad, containers, contravariant, hasql - , hasql-transaction, hedgehog, mmorph, opaleye, pretty - , product-profunctors, profunctors, scientific, semialign - , semigroupoids, tasty, tasty-hedgehog, text, these, time - , tmp-postgres, transformers, uuid - }: - mkDerivation { - pname = "rel8"; - version = "1.3.1.0"; - sha256 = "0r1pbci7zl01v485bgbn90m07qrqdzkcpj4mykkdxxla9zlj2m39"; - libraryHaskellDepends = [ - aeson base bifunctors bytestring case-insensitive comonad - contravariant hasql opaleye pretty product-profunctors profunctors - scientific semialign semigroupoids text these time uuid - ]; - testHaskellDepends = [ - base bytestring case-insensitive containers hasql hasql-transaction - hedgehog mmorph scientific tasty tasty-hedgehog text time - tmp-postgres transformers uuid - ]; - description = "Hey! Hey! Can u rel8?"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.sternenseemann ]; - }) {}; - - "rel8_1_4_0_0" = callPackage ({ mkDerivation, aeson, base, bifunctors, bytestring , case-insensitive, comonad, containers, contravariant, hasql , hasql-transaction, hedgehog, mmorph, opaleye, pretty @@ -241902,7 +241268,6 @@ self: { ]; description = "Hey! Hey! Can u rel8?"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.sternenseemann ]; }) {}; @@ -241935,8 +241300,6 @@ self: { ]; description = "Sensible RLP encoding"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "relation" = callPackage @@ -241957,6 +241320,8 @@ self: { testToolDepends = [ doctest-discover hspec-discover ]; description = "A data structure representing Relations on Sets"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "relational-postgresql8" = callPackage @@ -242263,27 +241628,6 @@ self: { }) {}; "relude" = callPackage - ({ mkDerivation, base, bytestring, containers, criterion, deepseq - , doctest, ghc-prim, Glob, hashable, hedgehog, mtl, stm, text - , transformers, unordered-containers - }: - mkDerivation { - pname = "relude"; - version = "1.0.0.1"; - sha256 = "0cw9a1gfvias4hr36ywdizhysnzbzxy20fb3jwmqmgjy40lzxp2g"; - libraryHaskellDepends = [ - base bytestring containers deepseq ghc-prim hashable mtl stm text - transformers unordered-containers - ]; - testHaskellDepends = [ - base bytestring containers doctest Glob hedgehog text - ]; - benchmarkHaskellDepends = [ base criterion unordered-containers ]; - description = "Safe, performant, user-friendly and lightweight Haskell Standard Library"; - license = lib.licenses.mit; - }) {}; - - "relude_1_1_0_0" = callPackage ({ mkDerivation, base, bytestring, containers, deepseq, doctest , ghc-prim, Glob, hashable, hedgehog, mtl, stm, tasty-bench, text , transformers, unordered-containers @@ -242304,7 +241648,6 @@ self: { ]; description = "Safe, performant, user-friendly and lightweight Haskell Standard Library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "remark" = callPackage @@ -243164,40 +242507,6 @@ self: { }) {}; "req" = callPackage - ({ mkDerivation, aeson, authenticate-oauth, base, blaze-builder - , bytestring, case-insensitive, connection, exceptions, hspec - , hspec-core, hspec-discover, http-api-data, http-client - , http-client-tls, http-types, modern-uri, monad-control, mtl - , QuickCheck, retry, template-haskell, text, time, transformers - , transformers-base, unliftio-core - }: - mkDerivation { - pname = "req"; - version = "3.10.0"; - sha256 = "176zl3ihmp8iz4fwfi5dalmiz658dis0hxni6bqzqgnaxhd0230w"; - revision = "2"; - editedCabalFile = "147q0jkfrg066lnl20gzv5rk6d9jdwyvaip2y4am5hkrvcg3v9z8"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - aeson authenticate-oauth base blaze-builder bytestring - case-insensitive connection exceptions http-api-data http-client - http-client-tls http-types modern-uri monad-control mtl retry - template-haskell text time transformers transformers-base - unliftio-core - ]; - testHaskellDepends = [ - aeson base blaze-builder bytestring case-insensitive hspec - hspec-core http-client http-types modern-uri monad-control mtl - QuickCheck retry template-haskell text time - ]; - testToolDepends = [ hspec-discover ]; - doCheck = false; - description = "HTTP client library"; - license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.maralorn ]; - }) {}; - - "req_3_13_0" = callPackage ({ mkDerivation, aeson, authenticate-oauth, base, blaze-builder , bytestring, case-insensitive, connection, containers, exceptions , hspec, hspec-core, hspec-discover, http-api-data, http-client @@ -243228,7 +242537,6 @@ self: { doCheck = false; description = "HTTP client library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.maralorn ]; }) {}; @@ -243375,6 +242683,8 @@ self: { ]; description = "Scrap your qualified import clutter"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "requirements" = callPackage @@ -243415,17 +242725,6 @@ self: { }) {}; "rerebase" = callPackage - ({ mkDerivation, rebase }: - mkDerivation { - pname = "rerebase"; - version = "1.15.0.3"; - sha256 = "0jxlssdxgh5ldgkdpmhpk8vy5fxmq95171b3jl57r9m2f7zqrcd2"; - libraryHaskellDepends = [ rebase ]; - description = "Reexports from \"base\" with a bunch of other standard libraries"; - license = lib.licenses.mit; - }) {}; - - "rerebase_1_16_1" = callPackage ({ mkDerivation, rebase }: mkDerivation { pname = "rerebase"; @@ -243434,34 +242733,9 @@ self: { libraryHaskellDepends = [ rebase ]; description = "Reexports from \"base\" with a bunch of other standard libraries"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "reroute" = callPackage - ({ mkDerivation, base, criterion, deepseq, graph-core, hashable - , hspec, http-api-data, hvect, mtl, random, regex-compat, text - , unordered-containers, vector - }: - mkDerivation { - pname = "reroute"; - version = "0.6.0.0"; - sha256 = "1jvh5ngpf1w4y9b1ipx1c65q8gmwsajp8k5ha0sjn89hbc8cp48y"; - libraryHaskellDepends = [ - base deepseq hashable http-api-data hvect mtl text - unordered-containers - ]; - testHaskellDepends = [ - base hspec hvect mtl text unordered-containers vector - ]; - benchmarkHaskellDepends = [ - base criterion deepseq graph-core hashable http-api-data hvect mtl - random regex-compat text unordered-containers vector - ]; - description = "abstract implementation of typed and untyped web routing"; - license = lib.licenses.mit; - }) {}; - - "reroute_0_7_0_0" = callPackage ({ mkDerivation, base, criterion, deepseq, graph-core, hashable , hspec, http-api-data, hvect, mtl, random, regex-compat, text , unordered-containers, vector @@ -243483,7 +242757,6 @@ self: { ]; description = "abstract implementation of typed and untyped web routing"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "rescue" = callPackage @@ -243515,6 +242788,8 @@ self: { ]; description = "More understandable exceptions"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "reserve" = callPackage @@ -243541,7 +242816,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "reserve"; - broken = true; }) {}; "reservoir" = callPackage @@ -243580,6 +242854,7 @@ self: { executableHaskellDepends = [ base comfort-array lapack ]; description = "Compute total resistance of a cube of resistors"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "resistor-cube"; }) {}; @@ -243740,7 +243015,6 @@ self: { ]; description = "Fork of resource-pool, with a MonadCatchIO constraint"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "resource-pool-fork-avanov" = callPackage @@ -244316,7 +243590,6 @@ self: { description = "RethinkDB driver for Haskell"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "retrie" = callPackage @@ -244350,7 +243623,7 @@ self: { license = lib.licenses.mit; }) {}; - "retrie_1_2_0_1" = callPackage + "retrie_1_2_1_1" = callPackage ({ mkDerivation, ansi-terminal, async, base, bytestring, containers , data-default, deepseq, directory, exceptions, filepath, ghc , ghc-exactprint, ghc-paths, haskell-src-exts, HUnit, list-t, mtl @@ -244359,10 +243632,8 @@ self: { }: mkDerivation { pname = "retrie"; - version = "1.2.0.1"; - sha256 = "1n3g9wr45xz1q2mhlj1r2709rqakczrvd7x6vxh7iapz43f69c6x"; - revision = "2"; - editedCabalFile = "0h6r4jg9mnqwvlsl3s6yl2zvhkwr8pdypbzvky4kwz4zvc03j5ql"; + version = "1.2.1.1"; + sha256 = "1axz2kdp6ljwiy8zvj33r6dbhgcglf0qlcq4s5f4bx4djsqwgavl"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -244401,6 +243672,7 @@ self: { ]; description = "Code shared across the code samples in the book \"Retrocomputing with Clash\""; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "retroclash-sim" = callPackage @@ -244420,6 +243692,7 @@ self: { ]; description = "High-level simulators from the book \"Retrocomputing with Clash\""; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "retry" = callPackage @@ -244549,6 +243822,8 @@ self: { libraryHaskellDepends = [ base containers contiguous deepseq ]; description = "reversed lists/snoc lists"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "reversi" = callPackage @@ -244919,33 +244194,59 @@ self: { }: mkDerivation { pname = "rhine"; - version = "0.8.0.1"; - sha256 = "07cw0xlj0nwbx0wjb3k4hpw5y6ksp25c1fa8xrrbaqv2jspv7z75"; + version = "0.8.1"; + sha256 = "15yklhx5gv8z60ky9ck2rkc9yb9m5jbziwp49a8gk0s03ii8scrz"; libraryHaskellDepends = [ base containers deepseq dunai free MonadRandom random simple-affine-space time time-domain transformers vector-sized ]; description = "Functional Reactive Programming with type-level clocks"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.turion ]; + broken = true; }) {}; "rhine-gloss" = callPackage ({ mkDerivation, base, dunai, gloss, rhine, transformers }: mkDerivation { pname = "rhine-gloss"; - version = "0.8.0.1"; - sha256 = "0qpza2n84illhlmqsz2xqj5k6a3jxb1kb9qhw6gz5fh4p4k8jqyl"; + version = "0.8.1"; + sha256 = "1lai9ii3q069zf49ls6cfdgjgq6njybxax45dqzqnxd59p0p9rrm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base dunai gloss rhine transformers ]; executableHaskellDepends = [ base ]; description = "Gloss backend for Rhine"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "rhine-gloss-gears"; maintainers = [ lib.maintainers.turion ]; }) {}; + "rhine-terminal" = callPackage + ({ mkDerivation, base, dunai, exceptions, hspec, rhine, stm + , terminal, text, time, transformers + }: + mkDerivation { + pname = "rhine-terminal"; + version = "0.8.1"; + sha256 = "1fmmzy8qdyk9c1vv2l2n0xs0f1fw46mcgyzmid60wrgw90h02sp7"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base dunai exceptions rhine terminal time transformers + ]; + executableHaskellDepends = [ base rhine terminal text time ]; + testHaskellDepends = [ + base exceptions hspec rhine stm terminal text time transformers + ]; + description = "Terminal backend for Rhine"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "rhine-terminal-simple"; + }) {}; + "rhythm-game-tutorial" = callPackage ({ mkDerivation, base, call, containers, lens, mtl, objective , split @@ -245063,7 +244364,6 @@ self: { description = "Static site generator based on Shake"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "rib-core" = callPackage @@ -245085,6 +244385,8 @@ self: { ]; description = "Static site generator based on Shake"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ribbit" = callPackage @@ -245508,8 +244810,8 @@ self: { }: mkDerivation { pname = "rio-prettyprint"; - version = "0.1.2.0"; - sha256 = "0xql9rjd0b8vyfllb9h8j7nxbrnrvz9kkclzlb3wln10l9pi5v03"; + version = "0.1.3.0"; + sha256 = "0zlr8wnh38i3dxxfva91q9cwcsvqx0alf9fscn4c4545qhzw7a02"; libraryHaskellDepends = [ aeson annotated-wl-pprint ansi-terminal array base Cabal colour mtl path rio text @@ -245518,6 +244820,23 @@ self: { license = lib.licenses.bsd3; }) {}; + "rio-prettyprint_0_1_4_0" = callPackage + ({ mkDerivation, aeson, annotated-wl-pprint, ansi-terminal, array + , base, Cabal, colour, mtl, path, rio, text + }: + mkDerivation { + pname = "rio-prettyprint"; + version = "0.1.4.0"; + sha256 = "0dagrbs9ssqh5mcr9fcaiqhc8vyr3aqxwxxpcd4j0bqvfcjhkbkz"; + libraryHaskellDepends = [ + aeson annotated-wl-pprint ansi-terminal array base Cabal colour mtl + path rio text + ]; + description = "Pretty-printing for RIO"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "rio-process-pool" = callPackage ({ mkDerivation, async, atomic-primops, base, containers, criterion , data-default, hashable, HUnit, mtl, QuickCheck, rio, tasty @@ -245549,7 +244868,6 @@ self: { ]; description = "A library for process pools coupled with asynchronous message queues"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; mainProgram = "rio-process-pool-memleak-test"; }) {}; @@ -245824,8 +245142,6 @@ self: { ]; description = "A data type of run-length-encoded lists"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "rlglue" = callPackage @@ -245998,22 +245314,32 @@ self: { }) {}; "roboservant" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, hedgehog, mtl - , servant, servant-client, servant-flatten, servant-server - , string-conversions + ({ mkDerivation, aeson, base, bytestring, containers, dependent-map + , dependent-sum, hashable, hspec, hspec-core, hspec-wai + , http-api-data, http-client, http-types, lifted-base + , markdown-unlit, monad-control, mtl, random, servant + , servant-client, servant-flatten, servant-server + , string-conversions, text, time, unordered-containers, vinyl, wai + , warp }: mkDerivation { pname = "roboservant"; - version = "0.1.0.2"; - sha256 = "1dbzwczmjms6phzf3r6igy1q33gkwsdirdabd2rr0i2qp0lynshv"; + version = "0.1.0.3"; + sha256 = "1qcxhmppvpbibzq6mmqzz891pmi9c6cjjvxjyn8vlhvydgklh6x4"; libraryHaskellDepends = [ - base bytestring containers hedgehog mtl servant servant-client - servant-flatten servant-server string-conversions + base bytestring containers dependent-map dependent-sum hashable + http-types lifted-base monad-control mtl random servant + servant-client servant-flatten servant-server string-conversions + text time unordered-containers vinyl ]; testHaskellDepends = [ - aeson base bytestring containers hedgehog mtl servant + aeson base bytestring containers dependent-map dependent-sum + hashable hspec hspec-core hspec-wai http-api-data http-client + http-types lifted-base monad-control mtl random servant servant-client servant-flatten servant-server string-conversions + text time unordered-containers vinyl wai warp ]; + testToolDepends = [ markdown-unlit ]; description = "Automatic session-aware servant testing"; license = lib.licenses.bsd3; }) {}; @@ -246105,6 +245431,8 @@ self: { ]; description = "Implementation of the ROC National ID standard"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "rock" = callPackage @@ -246209,7 +245537,9 @@ self: { ]; description = "Sci-fi roguelike game. Client application."; license = "unknown"; + hydraPlatforms = lib.platforms.none; mainProgram = "roguestar"; + broken = true; }) {}; "roguestar-engine" = callPackage @@ -246472,6 +245802,8 @@ self: { ]; description = "Parsing and pretty printing of Roman numerals"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "romkan" = callPackage @@ -246904,6 +246236,8 @@ self: { testHaskellDepends = [ base long-double ]; description = "Correctly-rounded arbitrary-precision floating-point arithmetic"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) gmp; inherit (pkgs) mpfr;}; "rounded-hw" = callPackage @@ -247603,6 +246937,8 @@ self: { ]; description = "Parsing and manipulation of rtorrent state file contents"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "rts-loader" = callPackage @@ -247906,6 +247242,7 @@ self: { description = "Look up class instances at runtime"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "rustls" = callPackage @@ -248029,8 +247366,8 @@ self: { }: mkDerivation { pname = "s-cargot"; - version = "0.1.4.0"; - sha256 = "0bay3ids11acs0b95gn99s6m93x3d8hl45yf008lv4wcxwaq77sd"; + version = "0.1.5.0"; + sha256 = "06y2hrf6ncnf37w3g1gphfcqxsbln62jkpww8x5r0qq6f2cgj2z1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base containers parsec text ]; @@ -248049,6 +247386,8 @@ self: { testHaskellDepends = [ base HUnit parsec s-cargot text ]; description = "Enables let-binding and let-expansion for s-cargot defined S-expressions"; license = lib.licenses.isc; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "s-expression" = callPackage @@ -248142,21 +247481,6 @@ self: { }) {}; "safe-coloured-text" = callPackage - ({ mkDerivation, base, bytestring, text, validity - , validity-bytestring, validity-text - }: - mkDerivation { - pname = "safe-coloured-text"; - version = "0.1.0.0"; - sha256 = "1fcqwllpbp9x1r1bvyry6bmp2s9rp8rlr3i94hdiydc71hpl7a0w"; - libraryHaskellDepends = [ - base bytestring text validity validity-bytestring validity-text - ]; - description = "Safely output coloured text"; - license = lib.licenses.mit; - }) {}; - - "safe-coloured-text_0_2_0_1" = callPackage ({ mkDerivation, base, bytestring, text, validity , validity-bytestring, validity-text }: @@ -248169,7 +247493,6 @@ self: { ]; description = "Safely output coloured text"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "safe-coloured-text-gen" = callPackage @@ -248233,17 +247556,6 @@ self: { }) {}; "safe-coloured-text-terminfo" = callPackage - ({ mkDerivation, base, safe-coloured-text, terminfo }: - mkDerivation { - pname = "safe-coloured-text-terminfo"; - version = "0.0.0.0"; - sha256 = "0f94zzmanmxplkcg1s954rq00ppv69icyjpzr5s0g6c14zp1k85b"; - libraryHaskellDepends = [ base safe-coloured-text terminfo ]; - description = "Safely output coloured text"; - license = lib.licenses.mit; - }) {}; - - "safe-coloured-text-terminfo_0_1_0_0" = callPackage ({ mkDerivation, base, safe-coloured-text, terminfo }: mkDerivation { pname = "safe-coloured-text-terminfo"; @@ -248252,7 +247564,6 @@ self: { libraryHaskellDepends = [ base safe-coloured-text terminfo ]; description = "Safely output coloured text"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "safe-coupling" = callPackage @@ -248389,9 +247700,9 @@ self: { "safe-json" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, dlist - , generic-arbitrary, hashable, quickcheck-instances, scientific - , tasty, tasty-hunit, tasty-quickcheck, temporary, text, time - , unordered-containers, uuid, uuid-types, vector + , hashable, quickcheck-instances, scientific, tasty, tasty-hunit + , tasty-quickcheck, temporary, text, time, unordered-containers + , uuid, uuid-types, vector }: mkDerivation { pname = "safe-json"; @@ -248405,7 +247716,7 @@ self: { uuid-types vector ]; testHaskellDepends = [ - aeson base bytestring containers dlist generic-arbitrary hashable + aeson base bytestring containers dlist hashable quickcheck-instances scientific tasty tasty-hunit tasty-quickcheck temporary text time unordered-containers uuid uuid-types vector ]; @@ -248552,6 +247863,8 @@ self: { ]; description = "Instances from the xmlbf library for the safe-money library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "safe-numeric" = callPackage @@ -248630,6 +247943,8 @@ self: { testHaskellDepends = [ base ]; description = "Use RecordWildCards safely"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "safecopy" = callPackage @@ -248740,6 +248055,8 @@ self: { ]; description = "Write output to disk atomically"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "safepath" = callPackage @@ -248932,6 +248249,8 @@ self: { ]; description = "Configuration (re)Loader and Parser"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "salak-toml" = callPackage @@ -248955,7 +248274,6 @@ self: { description = "Configuration Loader for toml"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "salak-yaml" = callPackage @@ -248977,28 +248295,10 @@ self: { ]; description = "Configuration Loader for yaml"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "saltine" = callPackage - ({ mkDerivation, base, bytestring, hashable, libsodium, profunctors - , QuickCheck, semigroups, test-framework - , test-framework-quickcheck2 - }: - mkDerivation { - pname = "saltine"; - version = "0.1.1.1"; - sha256 = "1bgr6vrmw18qr8akabxz6w3hwhlqi6zsnr23n70hkvwvcap1lnx7"; - libraryHaskellDepends = [ base bytestring hashable profunctors ]; - libraryPkgconfigDepends = [ libsodium ]; - testHaskellDepends = [ - base bytestring QuickCheck semigroups test-framework - test-framework-quickcheck2 - ]; - description = "Cryptography that's easy to digest (NaCl/libsodium bindings)"; - license = lib.licenses.mit; - }) {inherit (pkgs) libsodium;}; - - "saltine_0_2_0_1" = callPackage ({ mkDerivation, base, bytestring, criterion, deepseq, hashable , libsodium, profunctors, QuickCheck, semigroups, test-framework , test-framework-quickcheck2, text @@ -249021,7 +248321,6 @@ self: { benchmarkSystemDepends = [ libsodium ]; description = "Cryptography that's easy to digest (NaCl/libsodium bindings)"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) libsodium;}; "saltine-quickcheck" = callPackage @@ -249350,8 +248649,8 @@ self: { }: mkDerivation { pname = "sandwich"; - version = "0.1.1.2"; - sha256 = "1flac21bgxq07xq5ax9ga7xm1bg2bwld88msbginqxycx21dvcdq"; + version = "0.1.2.0"; + sha256 = "0g1qyhp0w8gxyv60phm1apvq1p7cx7z6f9ijjx67gh7pk9mmlbzw"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -249465,8 +248764,8 @@ self: { }: mkDerivation { pname = "sandwich-webdriver"; - version = "0.1.1.0"; - sha256 = "01y8jy2fvph9kmh42zwnf8y9rca82arn2a6wgh3mzylfijni74lj"; + version = "0.1.2.0"; + sha256 = "146pck1kj5p8h6x8bv6iriicrjxsi0jbpirmscjhc4gg8nd0fmxm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -249495,7 +248794,6 @@ self: { ]; description = "Sandwich integration with Selenium WebDriver"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "sandwich-webdriver-exe"; }) {}; @@ -249512,6 +248810,21 @@ self: { broken = true; }) {}; + "sarif" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, text + , uuid-types + }: + mkDerivation { + pname = "sarif"; + version = "0.1"; + sha256 = "17i9fkh2vm5ywi8h4b2h0f7hfqr484kg1dqrhj563a5idw4jqi0v"; + libraryHaskellDepends = [ + aeson base bytestring containers text uuid-types + ]; + description = "SARIF implementation for Haskell"; + license = lib.licenses.mit; + }) {}; + "sarsi" = callPackage ({ mkDerivation, ansi-terminal, async, attoparsec, base, binary , bytestring, Cabal, containers, cryptonite, directory, filepath @@ -249808,6 +249121,20 @@ self: { license = lib.licenses.bsd3; }) {}; + "sayable" = callPackage + ({ mkDerivation, base, bytestring, exceptions, prettyprinter, text + }: + mkDerivation { + pname = "sayable"; + version = "1.0.2.0"; + sha256 = "041qjk1giqrsfis410r491c3b2s36ngsk64ihzpjb788xbr86adx"; + libraryHaskellDepends = [ + base bytestring exceptions prettyprinter text + ]; + description = "Data structures, classes and operators for constructing context-adjusted pretty output"; + license = lib.licenses.isc; + }) {}; + "sbp" = callPackage ({ mkDerivation, aeson, aeson-pretty, array, base , base64-bytestring, basic-prelude, binary, binary-conduit @@ -249817,8 +249144,8 @@ self: { }: mkDerivation { pname = "sbp"; - version = "4.1.6"; - sha256 = "0ph1bn95bxpmfs2xvbgj7kpz3ji6jf65ykah5srmhqgbw21d1wl7"; + version = "4.9.0"; + sha256 = "14p0a23kmn9z9l8rm9q94zgyx5p0wnjrgf51shk2magjg055llkb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -249835,7 +249162,7 @@ self: { license = lib.licenses.mit; }) {}; - "sbp_4_9_0" = callPackage + "sbp_4_10_0" = callPackage ({ mkDerivation, aeson, aeson-pretty, array, base , base64-bytestring, basic-prelude, binary, binary-conduit , bytestring, cmdargs, conduit, conduit-extra, data-binary-ieee754 @@ -249844,8 +249171,8 @@ self: { }: mkDerivation { pname = "sbp"; - version = "4.9.0"; - sha256 = "14p0a23kmn9z9l8rm9q94zgyx5p0wnjrgf51shk2magjg055llkb"; + version = "4.10.0"; + sha256 = "1mhnqiqi6yv3mn0rcwiq5k79a2zxcpqp4284ziqrcjwnhjxd2cnf"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -249910,42 +249237,10 @@ self: { description = "SMT Based Verification: Symbolic Haskell theorem prover using SMT solving"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) z3;}; "sbv" = callPackage - ({ mkDerivation, array, async, base, bench-show, bytestring - , containers, deepseq, directory, doctest, filepath, gauge, Glob - , hlint, libBF, mtl, pretty, process, QuickCheck, random, silently - , syb, tasty, tasty-golden, tasty-hunit, tasty-quickcheck - , template-haskell, text, time, transformers, uniplate, z3 - }: - mkDerivation { - pname = "sbv"; - version = "8.17"; - sha256 = "0l9dwydrjipgq3cbv0g6y820mi7lf5lcn3hidl6a60zzdrkfyxhd"; - revision = "1"; - editedCabalFile = "18jjnxxq9bh5raxw3khgkx14wq4fv1kfd59lhh9v55z59sjaydiy"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - array async base containers deepseq directory filepath libBF mtl - pretty process QuickCheck random syb template-haskell text time - transformers uniplate - ]; - testHaskellDepends = [ - base bytestring containers directory doctest filepath Glob hlint - mtl QuickCheck random tasty tasty-golden tasty-hunit - tasty-quickcheck - ]; - testSystemDepends = [ z3 ]; - benchmarkHaskellDepends = [ - base bench-show containers deepseq directory filepath gauge mtl - process random silently syb text time - ]; - description = "SMT Based Verification: Symbolic Haskell theorem prover using SMT solving"; - license = lib.licenses.bsd3; - }) {inherit (pkgs) z3;}; - - "sbv_9_0" = callPackage ({ mkDerivation, array, async, base, bytestring, containers , deepseq, directory, filepath, hlint, libBF, mtl, pretty, process , QuickCheck, random, syb, tasty, tasty-bench, tasty-golden @@ -249973,6 +249268,7 @@ self: { description = "SMT Based Verification: Symbolic Haskell theorem prover using SMT solving"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) z3;}; "sbvPlugin" = callPackage @@ -249993,7 +249289,6 @@ self: { description = "Formally prove properties of Haskell programs using SBV/SMT"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "sc2-lowlevel" = callPackage @@ -250242,8 +249537,8 @@ self: { }: mkDerivation { pname = "scalpel-search"; - version = "0.1.0.0"; - sha256 = "0qq8q9z3s37wcc6iwygn2hfh72k5kak93vmsvl3wn0k04lrivg60"; + version = "0.1.0.1"; + sha256 = "166pillw3pkvdi3qrcdvb6rd442ddfvb3dh7nxhkv012j6163flz"; libraryHaskellDepends = [ base scalpel-core tagsoup text uri ]; testHaskellDepends = [ base hspec scalpel scalpel-core tagsoup text uri @@ -250432,7 +249727,6 @@ self: { description = "A Haskell library for writing SCGI programs"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "schedevr" = callPackage @@ -250451,6 +249745,7 @@ self: { description = "Marge schedules and show EVR"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "schedule" = callPackage @@ -250472,8 +249767,6 @@ self: { ]; description = "Pure deterministic scheduled computations"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "schedule-planner" = callPackage @@ -251050,21 +250343,19 @@ self: { "scotty" = callPackage ({ mkDerivation, aeson, async, base, base-compat-batteries , blaze-builder, bytestring, case-insensitive, data-default-class - , directory, exceptions, fail, hspec, hspec-discover, hspec-wai - , http-types, lifted-base, lucid, monad-control, mtl, nats, network + , directory, exceptions, hspec, hspec-discover, hspec-wai + , http-types, lifted-base, lucid, monad-control, mtl, network , regex-compat, text, transformers, transformers-base , transformers-compat, wai, wai-extra, warp, weigh }: mkDerivation { pname = "scotty"; - version = "0.12"; - sha256 = "1lpggpdzgjk23mq7aa64yylds5dbm4ynhcvbarqihjxabvh7xmz1"; - revision = "9"; - editedCabalFile = "0d61dgx6wq682mz8ryq2a10v1z4yi0dik8b5psi0ragl2qip191j"; + version = "0.12.1"; + sha256 = "0jnv2k37yv7hbm21w356ml4b14avlwh8yyzwwwfrwpbn6zzk6ahy"; libraryHaskellDepends = [ aeson base base-compat-batteries blaze-builder bytestring - case-insensitive data-default-class exceptions fail http-types - monad-control mtl nats network regex-compat text transformers + case-insensitive data-default-class exceptions http-types + monad-control mtl network regex-compat text transformers transformers-base transformers-compat wai wai-extra warp ]; testHaskellDepends = [ @@ -251215,6 +250506,7 @@ self: { libraryHaskellDepends = [ base haxl scotty text ]; description = "Combine scotty and haxl"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "scotty-params-parser" = callPackage @@ -251586,6 +250878,8 @@ self: { testHaskellDepends = [ base hspec ]; description = "This package provides functions for relocate an item within a list"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "scrypt" = callPackage @@ -251636,13 +250930,15 @@ self: { }) {}; "scubature" = callPackage - ({ mkDerivation, array, base, containers, ilist, matrix, vector }: + ({ mkDerivation, array, base, containers, hspray, ilist, matrix + , numeric-prelude, vector + }: mkDerivation { pname = "scubature"; - version = "1.0.0.0"; - sha256 = "1wp17l4k7yh7b3r3x2piinki4p03lp6bsbpqryah1zwy3hrpv06c"; + version = "1.1.0.0"; + sha256 = "1rzq2lr09705ydhvjvag9phmpvjr55crh4hjdhl3lgd9c58dmxja"; libraryHaskellDepends = [ - array base containers ilist matrix vector + array base containers hspray ilist matrix numeric-prelude vector ]; description = "Multidimensional integration over simplices"; license = lib.licenses.gpl3Only; @@ -251759,27 +251055,6 @@ self: { }) {}; "sdl2" = callPackage - ({ mkDerivation, base, bytestring, deepseq, exceptions, linear - , SDL2, StateVar, text, transformers, vector, weigh - }: - mkDerivation { - pname = "sdl2"; - version = "2.5.3.0"; - sha256 = "08l24cb92spnx3bn26bj0z2cszpsawhaa9vvhblvsr3d6z76065q"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - base bytestring exceptions linear StateVar text transformers vector - ]; - librarySystemDepends = [ SDL2 ]; - libraryPkgconfigDepends = [ SDL2 ]; - testHaskellDepends = [ base deepseq linear vector weigh ]; - description = "Both high- and low-level bindings to the SDL library (version 2.0.6+)."; - license = lib.licenses.bsd3; - }) {inherit (pkgs) SDL2;}; - - "sdl2_2_5_4_0" = callPackage ({ mkDerivation, base, bytestring, deepseq, exceptions, linear , SDL2, StateVar, text, transformers, vector, weigh }: @@ -251800,7 +251075,6 @@ self: { testHaskellDepends = [ base deepseq linear vector weigh ]; description = "Both high- and low-level bindings to the SDL library (version 2.0.6+)."; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) SDL2;}; "sdl2-cairo" = callPackage @@ -252005,6 +251279,8 @@ self: { libraryToolDepends = [ cpphs ]; description = "Simple Data Processing"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "sdp-binary" = callPackage @@ -252016,6 +251292,7 @@ self: { libraryHaskellDepends = [ base binary sdp ]; description = "Binary instances for SDP"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp-deepseq" = callPackage @@ -252027,6 +251304,7 @@ self: { libraryHaskellDepends = [ base deepseq sdp ]; description = "DeepSeq SDP extension"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp-hashable" = callPackage @@ -252038,6 +251316,7 @@ self: { libraryHaskellDepends = [ base hashable sdp ]; description = "Hashable instances for SDP"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp-io" = callPackage @@ -252049,6 +251328,7 @@ self: { libraryHaskellDepends = [ base fmr sdp ]; description = "SDP IO extension"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp-quickcheck" = callPackage @@ -252068,6 +251348,7 @@ self: { ]; description = "SDP QuickCheck support"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp4bytestring" = callPackage @@ -252088,6 +251369,7 @@ self: { ]; description = "SDP wrapper for ByteString"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp4text" = callPackage @@ -252106,6 +251388,7 @@ self: { ]; description = "SDP wrapper for Text"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp4unordered" = callPackage @@ -252119,6 +251402,7 @@ self: { ]; description = "SDP classes for unordered containers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdp4vector" = callPackage @@ -252137,6 +251421,7 @@ self: { ]; description = "SDP wrapper for Vector"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sdr" = callPackage @@ -252270,8 +251555,6 @@ self: { testHaskellDepends = [ base directory doctest filepath ]; description = "Infinite search in finite time with Hilbert's epsilon"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "search-algorithms" = callPackage @@ -252531,7 +251814,9 @@ self: { testToolDepends = [ tasty-discover ]; description = "Securely allocated and deallocated memory"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; mainProgram = "checkpw"; + broken = true; }) {}; "secure-sockets" = callPackage @@ -252639,8 +251924,6 @@ self: { libraryHaskellDepends = [ aeson base bytestring selda text ]; description = "JSON support for the Selda database library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "selda-postgresql" = callPackage @@ -252658,6 +251941,7 @@ self: { description = "PostgreSQL backend for the Selda database EDSL"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "selda-sqlite" = callPackage @@ -253035,19 +252319,6 @@ self: { }) {}; "semigroups" = callPackage - ({ mkDerivation, base }: - mkDerivation { - pname = "semigroups"; - version = "0.19.2"; - sha256 = "0h1sl3i6k8csy5zkkpy65rxzds9wg577z83aaakybr3n1gcv4855"; - revision = "2"; - editedCabalFile = "0pprwlsipdsshr2h83bk0xjkhq2bw88m9fn44fiyas3habg25ajf"; - libraryHaskellDepends = [ base ]; - description = "Anything that associates"; - license = lib.licenses.bsd3; - }) {}; - - "semigroups_0_20" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "semigroups"; @@ -253056,7 +252327,6 @@ self: { libraryHaskellDepends = [ base ]; description = "Anything that associates"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "semigroups-actions" = callPackage @@ -253088,6 +252358,8 @@ self: { ]; description = "Semilattices"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "semiring" = callPackage @@ -253442,6 +252714,7 @@ self: { description = "SmartyPants for Korean language"; license = lib.licenses.lgpl21Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "separated" = callPackage @@ -253674,6 +252947,8 @@ self: { libraryHaskellDepends = [ base bytestring ]; description = "Sequential numbers that allow arbitrarily inserting numbers - for containers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "sequor" = callPackage @@ -253826,8 +253101,6 @@ self: { testHaskellDepends = [ base bytestring HUnit ]; description = "Cross platform serial port library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "serokell-util" = callPackage @@ -254853,6 +254126,7 @@ self: { description = "Servant support for Server-Sent events"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servant-examples" = callPackage @@ -255073,7 +254347,6 @@ self: { description = "automatical derivation of querying functions for servant webservices"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "servant-hmac-auth" = callPackage @@ -255178,6 +254451,7 @@ self: { description = "Generate HTTP2 clients from Servant API descriptions"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servant-iCalendar" = callPackage @@ -255194,6 +254468,8 @@ self: { ]; description = "Servant support for iCalendar"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servant-jquery" = callPackage @@ -255213,6 +254489,7 @@ self: { description = "Automatically derive (jquery) javascript functions to query servant webservices"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servant-js" = callPackage @@ -255238,7 +254515,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Automatically derive javascript functions to query servant webservices"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "servant-jsonrpc" = callPackage @@ -255599,8 +254875,8 @@ self: { pname = "servant-openapi3"; version = "2.0.1.5"; sha256 = "0zcyqga4hbdyk34368108vv9vavzdhv26xphas7yppada2sshfay"; - revision = "1"; - editedCabalFile = "0bscnxbw1zd0f7ycjr54kxfdcxzndgbxpamc75r1yzly262xrc1b"; + revision = "3"; + editedCabalFile = "0xvs5a9zsg32iziznvvjhfji577xmza419xk0cy1hwamw17f43mi"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ aeson aeson-pretty base base-compat bytestring hspec http-media @@ -255617,6 +254893,35 @@ self: { license = lib.licenses.bsd3; }) {}; + "servant-openapi3_2_0_1_6" = callPackage + ({ mkDerivation, aeson, aeson-pretty, base, base-compat, bytestring + , Cabal, cabal-doctest, directory, doctest, filepath, hspec + , hspec-discover, http-media, insert-ordered-containers, lens + , lens-aeson, openapi3, QuickCheck, servant, singleton-bool + , template-haskell, text, time, unordered-containers, utf8-string + , vector + }: + mkDerivation { + pname = "servant-openapi3"; + version = "2.0.1.6"; + sha256 = "1hxz3n6l5l8p9s58sjilrn4lv1z17kfik0xdh05v5v1bzf0j2aij"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + aeson aeson-pretty base base-compat bytestring hspec http-media + insert-ordered-containers lens openapi3 QuickCheck servant + singleton-bool text unordered-containers + ]; + testHaskellDepends = [ + aeson base base-compat directory doctest filepath hspec lens + lens-aeson openapi3 QuickCheck servant template-haskell text time + utf8-string vector + ]; + testToolDepends = [ hspec-discover ]; + description = "Generate a Swagger/OpenAPI/OAS 3.0 specification for your servant API."; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "servant-options" = callPackage ({ mkDerivation, base, bytestring, http-types, servant-foreign , servant-server, text, wai @@ -255715,8 +255020,6 @@ self: { ]; description = "Utilities for using servant in a polysemy stack"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "servant-pool" = callPackage @@ -256386,7 +255689,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "servant-streamly-example"; - broken = true; }) {}; "servant-subscriber" = callPackage @@ -256469,8 +255771,8 @@ self: { pname = "servant-swagger-ui"; version = "0.3.5.4.5.0"; sha256 = "12w75z23bnygyr3ki9w3zfy9nhxyjawf9pyzhfg6rp2mq3nji9gg"; - revision = "2"; - editedCabalFile = "05g4gnvr8ljg5mszan5cr9zzi40p6d8sr7343mm2yc3ps45vy9g1"; + revision = "3"; + editedCabalFile = "0qspb55lvavfsyqjjjyyax9gqzp8yq9r13nvzj3qnsipjgw2irln"; libraryHaskellDepends = [ aeson base bytestring file-embed-lzma servant servant-server servant-swagger-ui-core text @@ -256488,8 +255790,8 @@ self: { pname = "servant-swagger-ui-core"; version = "0.3.5"; sha256 = "0ckvrwrb3x39hfl2hixcj3fhibh0vqsh6y7n1lsm25yvzfrg02zd"; - revision = "4"; - editedCabalFile = "16183mrmxipa3l3ffpibsrr41mbi2iikw66y80hplmnl6jjhnyzd"; + revision = "5"; + editedCabalFile = "1v80wydj605b1la1pa5b4l6c3ba86x2dlpnravvhmx32mkkxk7v2"; libraryHaskellDepends = [ aeson base blaze-markup bytestring http-media servant servant-blaze servant-server text transformers transformers-compat wai-app-static @@ -256582,6 +255884,25 @@ self: { transformers ]; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "servant-typed-error" = callPackage + ({ mkDerivation, aeson, base, mtl, servant, servant-client + , servant-server, sop-core + }: + mkDerivation { + pname = "servant-typed-error"; + version = "0.1.2.0"; + sha256 = "0bzn0ilq94bghm96dq08hyfcjkf72hg49527ix1sy52d0bym3xmm"; + libraryHaskellDepends = [ + aeson base mtl servant servant-client servant-server sop-core + ]; + description = "Typed error wrapper for Servant"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servant-typescript" = callPackage @@ -256659,9 +255980,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Servant servers utilities"; license = lib.licenses.mpl20; - hydraPlatforms = lib.platforms.none; mainProgram = "servant-util-examples"; - broken = true; }) {}; "servant-util-beam-pg" = callPackage @@ -256692,7 +256011,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Implementation of servant-util primitives for beam-postgres"; license = lib.licenses.mpl20; - hydraPlatforms = lib.platforms.none; mainProgram = "servant-util-beam-pg-examples"; }) {}; @@ -256793,6 +256111,25 @@ self: { ]; description = "Servant support for the XML Content-Type"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "servant-xml_1_0_2" = callPackage + ({ mkDerivation, base, bytestring, http-media, servant, xmlbf + , xmlbf-xeno + }: + mkDerivation { + pname = "servant-xml"; + version = "1.0.2"; + sha256 = "07ancw5dypcxqc48g9zn8vn597hj174aq5akzyr650pwz0dvwsfk"; + libraryHaskellDepends = [ + base bytestring http-media servant xmlbf xmlbf-xeno + ]; + description = "Servant support for the XML Content-Type"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servant-xstatic" = callPackage @@ -257002,6 +256339,8 @@ self: { ]; description = "Storage backend for serversession using acid-state"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "serversession-backend-persistent" = callPackage @@ -257137,6 +256476,8 @@ self: { ]; description = "JSON to Sql"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "servius" = callPackage @@ -257674,6 +257015,8 @@ self: { librarySystemDepends = [ libsndfile openal ]; description = "minimal bindings to the audio module of sfml"; license = "unknown"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) libsndfile; inherit (pkgs) openal;}; "sfmt" = callPackage @@ -257934,7 +257277,6 @@ self: { description = "Functional GPU programming - DSEL & compiler"; license = "unknown"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "shady-graphics" = callPackage @@ -258004,22 +257346,21 @@ self: { ]; description = "Utilities for building ATS projects with shake"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "shake-bench" = callPackage - ({ mkDerivation, aeson, base, Chart, Chart-diagrams + ({ mkDerivation, aeson, base, bytestring, Chart, Chart-diagrams , diagrams-contrib, diagrams-core, diagrams-lib, diagrams-svg , directory, extra, filepath, lens, lens-aeson, mtl, shake, text }: mkDerivation { pname = "shake-bench"; - version = "0.1.1.0"; - sha256 = "1p2xa2kxfvzy2c188i9czr5w4jck4sxw2jb7s9dc1b5xf1a4bi01"; + version = "0.2.0.0"; + sha256 = "0jyx1pwj4wh80026ndxz7dapp7hw1v21z9bpd1073g73h7l5kw91"; libraryHaskellDepends = [ - aeson base Chart Chart-diagrams diagrams-contrib diagrams-core - diagrams-lib diagrams-svg directory extra filepath lens lens-aeson - mtl shake text + aeson base bytestring Chart Chart-diagrams diagrams-contrib + diagrams-core diagrams-lib diagrams-svg directory extra filepath + lens lens-aeson mtl shake text ]; description = "Build rules for historical benchmarking"; license = lib.licenses.asl20; @@ -258069,8 +257410,6 @@ self: { ]; description = "Shake library for use with cabal"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "shake-cabal-build" = callPackage @@ -258253,7 +257592,6 @@ self: { description = "Shake File Pack Rule"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "shake-path" = callPackage @@ -258610,9 +257948,7 @@ self: { ]; description = "physics engine and other tools for 2D shapes"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "shapes-bench"; - broken = true; }) {}; "shapes-demo" = callPackage @@ -258632,7 +257968,6 @@ self: { ]; description = "demos for the 'shapes' package"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "shapes-demo"; }) {}; @@ -259333,6 +258668,8 @@ self: { ]; description = "Additional ShortByteString API"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "shortcircuit" = callPackage @@ -259496,10 +258833,8 @@ self: { }: mkDerivation { pname = "shower"; - version = "0.2.0.2"; - sha256 = "0flad49vvqww2pbf6j8557szffd7wb3z375avhvzwqyklimwipgn"; - revision = "1"; - editedCabalFile = "0d5vfb65lq6f36lagsf89dj45gs68dyv6cc6lqxz0c23bv91qarc"; + version = "0.2.0.3"; + sha256 = "0bxg88jbg5pj1nm48c1s04dl7l5psq35jsw60y3v1xpnszx95r1r"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base megaparsec pretty ]; @@ -259935,9 +259270,7 @@ self: { ]; description = "Calculate expressions involving significant figures"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "significant-figures-cli"; - broken = true; }) {}; "signify-hs" = callPackage @@ -259961,6 +259294,7 @@ self: { ]; description = "A Haskell clone of OpenBSD signify"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "signify-hs"; }) {}; @@ -260228,8 +259562,8 @@ self: { ({ mkDerivation, base, bytestring, Cabal, directory, filepath }: mkDerivation { pname = "simple-cabal"; - version = "0.1.3"; - sha256 = "035h20sz2hg2xc1k5ds1q367fa10px936dlhj3yxkydp3wprqr7x"; + version = "0.1.3.1"; + sha256 = "08cg8c8zw1gxz1m75695c5x5g3wxa47rnqrn5ws23da9krzy4762"; libraryHaskellDepends = [ base bytestring Cabal directory filepath ]; @@ -260369,8 +259703,6 @@ self: { benchmarkHaskellDepends = [ base criterion mtl transformers ]; description = "A simple effect system that integrates with MTL"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "simple-enumeration" = callPackage @@ -260564,6 +259896,7 @@ self: { description = "Logging effect to plug into the simple-effects framework"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "simple-ltl" = callPackage @@ -260686,8 +260019,8 @@ self: { }: mkDerivation { pname = "simple-parser"; - version = "0.12.0"; - sha256 = "1g8ik221kfzjb3bndxghk42ki7hhs4xbwxq8arc66hsnynjxi7rs"; + version = "0.12.1"; + sha256 = "0izlhj9jilwj7zilav8ygnz5k6zbz65q2s1yyjsx62b9mfl9skqs"; libraryHaskellDepends = [ base bytestring containers errata exceptions mmorph mtl nonempty-containers scientific text text-builder @@ -261440,6 +260773,8 @@ self: { testHaskellDepends = [ base ]; description = "Like singletons, but much smaller"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "singleton-bool" = callPackage @@ -261495,6 +260830,20 @@ self: { }) {}; "singletons" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "singletons"; + version = "3.0.1"; + sha256 = "0lqg9wxh02z2sikpy88asm8g4sfrvyb66b7p76irsij31h0cxbnk"; + revision = "1"; + editedCabalFile = "0n3jr9jqz50ygaw80a9cx3g09w7w8bdlq9ssyap0a4990yxl8fbx"; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ base ]; + description = "Basic singleton types and definitions"; + license = lib.licenses.bsd3; + }) {}; + + "singletons_3_0_2" = callPackage ({ mkDerivation, base }: mkDerivation { pname = "singletons"; @@ -261504,6 +260853,7 @@ self: { testHaskellDepends = [ base ]; description = "Basic singleton types and definitions"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "singletons-base" = callPackage @@ -261513,8 +260863,10 @@ self: { }: mkDerivation { pname = "singletons-base"; - version = "3.0"; - sha256 = "0syrh4f9rs4g643c90md1vqrpr6p8h8g8sh4x3j2dld12yvrw4wn"; + version = "3.1"; + sha256 = "1bsfbdbfwiq2nis3r95x06r0q9iypyz4hkvmgvk56bwj6421k7kd"; + revision = "1"; + editedCabalFile = "12p0xzmrkn2bjz6wf9i291bh47s9c0ziz6cvvja65vnzwd8l60ry"; setupHaskellDepends = [ base Cabal directory filepath ]; libraryHaskellDepends = [ base pretty singletons singletons-th template-haskell text @@ -261569,16 +260921,35 @@ self: { license = lib.licenses.bsd3; }) {}; + "singletons-presburger_0_7_1_0" = callPackage + ({ mkDerivation, base, ghc, ghc-typelits-presburger, mtl + , reflection, singletons, singletons-base + }: + mkDerivation { + pname = "singletons-presburger"; + version = "0.7.1.0"; + sha256 = "1qzjbbscykcvbbl8ifkr6nvm5fnqqzr8ddgq1blcm811lmi0g926"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base ghc ghc-typelits-presburger mtl reflection singletons + singletons-base + ]; + description = "Presburger Arithmetic Solver for GHC Type-level natural numbers with Singletons package"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "singletons-th" = callPackage ({ mkDerivation, base, containers, ghc-boot-th, mtl, singletons , syb, template-haskell, th-desugar, th-orphans, transformers }: mkDerivation { pname = "singletons-th"; - version = "3.0"; - sha256 = "1c0w7sg0lbpizrzns4g55wxsk5jm8wlqw0w9rz4jzqwy15byb572"; - revision = "1"; - editedCabalFile = "11mmccdqxplqz7mp1brxpr9hqnkqkhbwnp32mihz4ird0k8gwqij"; + version = "3.1"; + sha256 = "1mhx7sadw7zxaf7qhryrhi4fiyf9v3jcaplkh1syaa7b4725dm7a"; + revision = "2"; + editedCabalFile = "19ac6s4k6yv0lfrhkmgpf000k32rpm91lngs4955158792pa6fi6"; libraryHaskellDepends = [ base containers ghc-boot-th mtl singletons syb template-haskell th-desugar th-orphans transformers @@ -261689,6 +261060,8 @@ self: { ]; description = "siphash: a fast short input PRF"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "siphon" = callPackage @@ -261884,8 +261257,8 @@ self: { }: mkDerivation { pname = "sized"; - version = "1.0.0.1"; - sha256 = "1ayj3fzr4l4l5wmkqnv4h4fxgivmjgamq3wdlpixlwy43wbmf3fy"; + version = "1.0.0.2"; + sha256 = "0l6miv6dw0j5fdkiig7a8akhphrpxs8ls6xdakzpbk53bdh0093n"; libraryHaskellDepends = [ base constraints containers deepseq equational-reasoning ghc-typelits-knownnat ghc-typelits-presburger hashable lens @@ -262184,8 +261557,8 @@ self: { }: mkDerivation { pname = "sketch-frp-copilot"; - version = "1.0.4"; - sha256 = "0drqv0aj7hx0h2z8wz487f0xi62pjgrljxhw3x5wdjxyh6zr43ba"; + version = "1.0.5"; + sha256 = "0vz7p5vsjkvck3znn9ywbyi1vw0cmfb5n48m2sbcm4ky7j5x7yps"; libraryHaskellDepends = [ base containers copilot copilot-c99 copilot-language mtl optparse-applicative @@ -262209,6 +261582,8 @@ self: { ]; description = "A very quick-and-dirty WebSocket server"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "skip-list" = callPackage @@ -262275,36 +261650,14 @@ self: { }) {}; "skylighting" = callPackage - ({ mkDerivation, base, binary, blaze-html, bytestring, containers - , pretty-show, skylighting-core, text - }: - mkDerivation { - pname = "skylighting"; - version = "0.12.3.1"; - sha256 = "08wml20cphj5idv5f20cz0jx7n8f037gy7x5axak83sbd98k71nw"; - configureFlags = [ "-fexecutable" ]; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base binary containers skylighting-core - ]; - executableHaskellDepends = [ - base blaze-html bytestring containers pretty-show text - ]; - description = "syntax highlighting library"; - license = lib.licenses.gpl2Only; - mainProgram = "skylighting"; - }) {}; - - "skylighting_0_13_1_1" = callPackage ({ mkDerivation, base, binary, blaze-html, bytestring, containers , pretty-show, skylighting-core, skylighting-format-ansi , skylighting-format-blaze-html, skylighting-format-latex, text }: mkDerivation { pname = "skylighting"; - version = "0.13.1.1"; - sha256 = "01awb174z27iygjssrsgvrq8lapq7282vs4bf5cxdbkjcpncil4b"; + version = "0.13.1.2"; + sha256 = "05m11hd6xr4kh6jgdj4mgwa7nbrj29jzca76pjpm0mjiqv3ah3av"; configureFlags = [ "-fexecutable" ]; isLibrary = true; isExecutable = true; @@ -262317,28 +261670,53 @@ self: { ]; description = "syntax highlighting library"; license = lib.licenses.gpl2Only; + mainProgram = "skylighting"; + }) {}; + + "skylighting_0_13_2" = callPackage + ({ mkDerivation, base, binary, blaze-html, bytestring, containers + , pretty-show, skylighting-core, skylighting-format-ansi + , skylighting-format-blaze-html, skylighting-format-context + , skylighting-format-latex, text + }: + mkDerivation { + pname = "skylighting"; + version = "0.13.2"; + sha256 = "0dh4k39ddqca5px2d06ni8n9x3mifvkwd5i16077l472dwjcs879"; + configureFlags = [ "-fexecutable" ]; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base binary containers skylighting-core skylighting-format-ansi + skylighting-format-blaze-html skylighting-format-context + skylighting-format-latex + ]; + executableHaskellDepends = [ + base blaze-html bytestring containers pretty-show text + ]; + description = "syntax highlighting library"; + license = lib.licenses.gpl2Only; hydraPlatforms = lib.platforms.none; mainProgram = "skylighting"; }) {}; "skylighting-core" = callPackage - ({ mkDerivation, aeson, ansi-terminal, attoparsec, base - , base64-bytestring, binary, blaze-html, bytestring - , case-insensitive, colour, containers, criterion, Diff, directory - , filepath, mtl, pretty-show, QuickCheck, safe, tasty, tasty-golden - , tasty-hunit, tasty-quickcheck, text, transformers, utf8-string - , xml-conduit + ({ mkDerivation, aeson, attoparsec, base, base64-bytestring, binary + , bytestring, case-insensitive, colour, containers, criterion, Diff + , directory, filepath, mtl, pretty-show, QuickCheck, safe, tasty + , tasty-golden, tasty-hunit, tasty-quickcheck, text, transformers + , utf8-string, xml-conduit }: mkDerivation { pname = "skylighting-core"; - version = "0.12.3.1"; - sha256 = "08svbbfw27zhlblglagxqvsppkdfibqjnx331jdbfrlj0a9pi5h8"; + version = "0.13.1.2"; + sha256 = "0081zihpiq4w99x4s5bhf0r2j627dzmlnmpca5rq16mqvhz22mmz"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson ansi-terminal attoparsec base base64-bytestring binary - blaze-html bytestring case-insensitive colour containers directory - filepath mtl safe text transformers utf8-string xml-conduit + aeson attoparsec base base64-bytestring binary bytestring + case-insensitive colour containers directory filepath mtl safe text + transformers utf8-string xml-conduit ]; testHaskellDepends = [ aeson base bytestring containers Diff directory filepath @@ -262352,7 +261730,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "skylighting-core_0_13_1_1" = callPackage + "skylighting-core_0_13_2" = callPackage ({ mkDerivation, aeson, attoparsec, base, base64-bytestring, binary , bytestring, case-insensitive, colour, containers, criterion, Diff , directory, filepath, mtl, pretty-show, QuickCheck, safe, tasty @@ -262361,8 +261739,8 @@ self: { }: mkDerivation { pname = "skylighting-core"; - version = "0.13.1.1"; - sha256 = "0cr9crylkawr1dg1aj55mbngn71nih16kfiblxi1gvizgxcrvdys"; + version = "0.13.2"; + sha256 = "0iwzfgynj3l8rnvvrl4kg0i1n31rz15da8cf1943gw1vcfh6w585"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -262415,8 +261793,6 @@ self: { ]; description = "ANSI formatter for skylighting syntax highlighting library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "skylighting-format-blaze-html" = callPackage @@ -262434,6 +261810,17 @@ self: { license = lib.licenses.bsd3; }) {}; + "skylighting-format-context" = callPackage + ({ mkDerivation, base, containers, skylighting-core, text }: + mkDerivation { + pname = "skylighting-format-context"; + version = "0.1.0.1"; + sha256 = "1d4nf16wl2l4r627qnph09x21xwcq03r7bznqm08d4di1z241xv0"; + libraryHaskellDepends = [ base containers skylighting-core text ]; + description = "ConTeXt formatter for skylighting syntax highlighting library"; + license = lib.licenses.bsd3; + }) {}; + "skylighting-format-latex" = callPackage ({ mkDerivation, base, containers, skylighting-core, text }: mkDerivation { @@ -262456,6 +261843,8 @@ self: { ]; description = "Lucid support for Skylighting"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "skylighting-modding" = callPackage @@ -262622,31 +262011,40 @@ self: { }) {}; "slack-web" = callPackage - ({ mkDerivation, aeson, base, containers, deepseq, errors, fakepull - , hashable, hspec, http-api-data, http-client, http-client-tls - , megaparsec, mtl, QuickCheck, quickcheck-instances, scientific - , servant, servant-client, servant-client-core, text, time - , transformers, unordered-containers + ({ mkDerivation, aeson, aeson-pretty, base, base16-bytestring + , bytestring, classy-prelude, containers, cryptonite + , data-default-class, deepseq, either, errors, fakepull + , generic-arbitrary, hashable, hspec, hspec-core, hspec-discover + , hspec-golden, http-api-data, http-client, http-client-tls + , megaparsec, mono-traversable, mtl, pretty-simple, QuickCheck + , quickcheck-instances, refined, scientific, servant + , servant-client, servant-client-core, string-conversions + , string-variants, template-haskell, text, th-compat, time + , transformers, unordered-containers, vector }: mkDerivation { pname = "slack-web"; - version = "0.4.0.0"; - sha256 = "1l6vls3c941gfvmx11l7xqj1vnngxk5las3pjdw45c93cqfzin74"; + version = "1.6.1.0"; + sha256 = "08cs3y9q76mj0xjfxphm2nnmngcxhdqmdqimxph82143hs4g8qh7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson base containers deepseq errors hashable http-api-data - http-client http-client-tls megaparsec mtl scientific servant - servant-client servant-client-core text time transformers - unordered-containers + aeson base base16-bytestring bytestring classy-prelude containers + cryptonite data-default-class deepseq either errors hashable + http-api-data http-client http-client-tls megaparsec + mono-traversable mtl refined scientific servant servant-client + servant-client-core string-conversions string-variants text time + transformers unordered-containers vector ]; testHaskellDepends = [ - aeson base fakepull hspec QuickCheck quickcheck-instances text time + aeson aeson-pretty base bytestring classy-prelude fakepull + generic-arbitrary hspec hspec-core hspec-golden mtl pretty-simple + QuickCheck quickcheck-instances string-conversions string-variants + template-haskell text th-compat time ]; + testToolDepends = [ hspec-discover ]; description = "Bindings for the Slack web API"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "slate" = callPackage @@ -262685,8 +262083,8 @@ self: { }: mkDerivation { pname = "slave-thread"; - version = "1.1.0.1"; - sha256 = "05hz0qglxg889l3b0sw9f79xqssw70fd62a766xcvj7aalmrc32i"; + version = "1.1.0.2"; + sha256 = "1pbffrmwd975as495b5b4ad59rajgq1dmbvmp07zfb2rmwhpr5n8"; libraryHaskellDepends = [ base deferred-folds focus foldl stm-containers ]; @@ -262696,8 +262094,6 @@ self: { ]; description = "A fundamental solution to ghost threads and silent exceptions"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "sleep" = callPackage @@ -262767,16 +262163,14 @@ self: { }: mkDerivation { pname = "slick"; - version = "1.1.2.2"; - sha256 = "0q6q496cvrsc4gnksihib0dr80cjg0n9vy69h2ani2ax0g75fzqd"; + version = "1.2.0.0"; + sha256 = "1a1k723x0q9i43lvzagqar9fcaprni77r158la09kmmxzdmbzsl2"; libraryHaskellDepends = [ aeson base bytestring directory extra mustache pandoc shake text unordered-containers ]; description = "A quick & easy static site builder built with shake and pandoc"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "slidemews" = callPackage @@ -262797,6 +262191,7 @@ self: { license = "GPL"; hydraPlatforms = lib.platforms.none; mainProgram = "slidemews"; + broken = true; }) {}; "slim" = callPackage @@ -262975,7 +262370,9 @@ self: { testHaskellDepends = [ base hspec text text-icu ]; description = "Clean URI slugs for Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "slugger"; + broken = true; }) {}; "slugify" = callPackage @@ -262991,33 +262388,11 @@ self: { testToolDepends = [ hspec-discover ]; description = "Convert text into slugs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "slynx" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring, containers - , elynx-markov, elynx-seq, elynx-tools, elynx-tree, hmatrix - , mwc-random, optparse-applicative, statistics, text, transformers - , vector - }: - mkDerivation { - pname = "slynx"; - version = "0.6.1.1"; - sha256 = "14yn94hl6nlbwa1hk1mgkgckcmb6bvfk2pa3847h98g19bz7qfw4"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson attoparsec base bytestring containers elynx-markov elynx-seq - elynx-tools elynx-tree hmatrix mwc-random optparse-applicative - statistics text transformers vector - ]; - executableHaskellDepends = [ base ]; - description = "Handle molecular sequences"; - license = lib.licenses.gpl3Plus; - mainProgram = "slynx"; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "slynx_0_7_0_1" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, containers , elynx-markov, elynx-seq, elynx-tools, elynx-tree, hmatrix , matrices, optparse-applicative, random, statistics, text @@ -263037,7 +262412,6 @@ self: { executableHaskellDepends = [ base ]; description = "Handle molecular sequences"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "slynx"; maintainers = [ lib.maintainers.dschrempf ]; }) {}; @@ -263361,6 +262735,8 @@ self: { ]; description = "Combinators for Maybe types"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "smash-aeson" = callPackage @@ -263372,6 +262748,7 @@ self: { libraryHaskellDepends = [ aeson base smash unordered-containers ]; description = "Aeson support for the smash library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "smash-lens" = callPackage @@ -263384,6 +262761,7 @@ self: { testHaskellDepends = [ base ]; description = "Optics for the `smash` library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "smash-microlens" = callPackage @@ -263396,6 +262774,7 @@ self: { testHaskellDepends = [ base ]; description = "Optics for the `smash` library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "smash-optics" = callPackage @@ -263407,6 +262786,7 @@ self: { libraryHaskellDepends = [ base optics-core smash ]; description = "Optics for the `smash` library using `optics-core`"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "smawk" = callPackage @@ -263651,6 +263031,73 @@ self: { license = lib.licenses.bsd3; }) {}; + "smtlib-backends" = callPackage + ({ mkDerivation, base, bytestring }: + mkDerivation { + pname = "smtlib-backends"; + version = "0.2"; + sha256 = "0p77m8f937zsnkxwc44pwhbm2dghbvw7f0xr867f07b1kzl6vpdk"; + libraryHaskellDepends = [ base bytestring ]; + description = "Low-level functions for SMT-LIB-based interaction with SMT solvers"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + + "smtlib-backends-process" = callPackage + ({ mkDerivation, async, base, bytestring, data-default + , smtlib-backends, smtlib-backends-tests, tasty, tasty-hunit + , typed-process + }: + mkDerivation { + pname = "smtlib-backends-process"; + version = "0.2"; + sha256 = "11jcx0ixf0yd9wjc77xvfsr1hvb5awr1wxvl18y54jdlkff8qfzz"; + libraryHaskellDepends = [ + async base bytestring data-default smtlib-backends typed-process + ]; + testHaskellDepends = [ + base bytestring data-default smtlib-backends smtlib-backends-tests + tasty tasty-hunit typed-process + ]; + description = "An SMT-LIB backend running solvers as external processes"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + + "smtlib-backends-tests" = callPackage + ({ mkDerivation, base, smtlib-backends, tasty, tasty-hunit }: + mkDerivation { + pname = "smtlib-backends-tests"; + version = "0.2"; + sha256 = "14n5qdan4kbcc9h1agdnvc4hbaycmpm2srdx0c19g76iwc3598c8"; + libraryHaskellDepends = [ base smtlib-backends tasty tasty-hunit ]; + description = "Testing SMT-LIB backends"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + + "smtlib-backends-z3" = callPackage + ({ mkDerivation, base, bytestring, containers, gomp, inline-c + , smtlib-backends, smtlib-backends-tests, tasty, tasty-hunit, z3 + }: + mkDerivation { + pname = "smtlib-backends-z3"; + version = "0.2"; + sha256 = "0ar2ian2ap2zwq7x2vr4pf2ilkhfdkxl23mc4kga0hrq2n0nknf0"; + libraryHaskellDepends = [ + base bytestring containers inline-c smtlib-backends + ]; + librarySystemDepends = [ gomp z3 ]; + testHaskellDepends = [ + base bytestring smtlib-backends smtlib-backends-tests tasty + tasty-hunit + ]; + description = "An SMT-LIB backend implemented using Z3's C API"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {inherit (pkgs) gomp; inherit (pkgs) z3;}; + "smtlib2" = callPackage ({ mkDerivation, base, constraints, containers, dependent-map , dependent-sum, mtl, template-haskell @@ -263937,6 +263384,8 @@ self: { pname = "snap"; version = "1.1.3.1"; sha256 = "1zq7yz5w9ms8zm5z4c05awkdarqbmb7pp13y9c1x04qfd5ba4c47"; + revision = "2"; + editedCabalFile = "16rkb05mrvi7binynawkshsvikdvxqrv8bxxjcgs4k30arx39cz5"; libraryHaskellDepends = [ aeson attoparsec base bytestring cereal clientsession configurator containers directory directory-tree dlist fail filepath hashable @@ -264007,6 +263456,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "snap-auth-cli"; + broken = true; }) {}; "snap-blaze" = callPackage @@ -264030,7 +263480,6 @@ self: { description = "blaze-html-clay integration for Snap"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "snap-configuration-utilities" = callPackage @@ -264062,8 +263511,8 @@ self: { pname = "snap-core"; version = "1.0.5.0"; sha256 = "0hf671g7h4nikfvi05q3mmcxhfcsh874dkansssn0mc68k9fsak4"; - revision = "2"; - editedCabalFile = "14cvxfyq4d0sjyyj1qxphzywgq63kxmc4bcgwfd6hphqd60h2p35"; + revision = "3"; + editedCabalFile = "02r6plphl4vqig3xap9amdib0qjd98nqpn5jhy6hsbiwh3p7cy9b"; libraryHaskellDepends = [ attoparsec base bytestring bytestring-builder case-insensitive containers directory filepath hashable HUnit io-streams lifted-base @@ -264194,6 +263643,8 @@ self: { ]; description = "Snap dynamic loader"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snap-loader-static" = callPackage @@ -264267,8 +263718,8 @@ self: { pname = "snap-server"; version = "1.1.2.0"; sha256 = "0w4yv9a5ilpma0335ariwap2iscmdbaaif88lq3cm7px910nyc4j"; - revision = "1"; - editedCabalFile = "0ijwp0s976cpb4nny8l7vpf5xny6k8dy2xb1rya1l2x5yzj7hlrj"; + revision = "2"; + editedCabalFile = "0dzsn3y7jnha1jbp0n5igjrg4cb8kggps798rlix60d66iy8r1l2"; configureFlags = [ "-fopenssl" ]; isLibrary = true; isExecutable = true; @@ -264377,6 +263828,7 @@ self: { description = "Snap Framework utilities"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snap-web-routes" = callPackage @@ -264474,6 +263926,7 @@ self: { description = "Provides an Acid-State backend for the Auth Snaplet"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snaplet-coffee" = callPackage @@ -264492,6 +263945,7 @@ self: { description = "CoffeeScript for Snap, auto-compilation and pre-compilation"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snaplet-css-min" = callPackage @@ -264796,6 +264250,7 @@ self: { description = "mysql-simple snaplet for the Snap Framework"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snaplet-oauth" = callPackage @@ -264920,6 +264375,7 @@ self: { description = "A ReCAPTCHA verification snaplet with Heist integration and connection sharing"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snaplet-redis" = callPackage @@ -265099,8 +264555,6 @@ self: { ]; description = "sqlite-simple snaplet for the Snap Framework"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "snaplet-sqlite-simple-jwt-auth" = callPackage @@ -265121,6 +264575,7 @@ self: { description = "Snaplet for JWT authentication with snaplet-sqlite-simple"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "snaplet-stripe" = callPackage @@ -265221,6 +264676,8 @@ self: { ]; description = "Bindings to the Google Snappy library for fast compression/decompression"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) snappy;}; "snappy-conduit" = callPackage @@ -265233,7 +264690,6 @@ self: { description = "Conduit bindings for Snappy (see snappy package)"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "snappy-framing" = callPackage @@ -265245,6 +264701,7 @@ self: { libraryHaskellDepends = [ array base binary bytestring snappy ]; description = "Snappy Framing Format in Haskell"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; }) {}; "snappy-iteratee" = callPackage @@ -265271,6 +264728,7 @@ self: { ]; description = "Lazy bytestring compression and decompression"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "sndfile-enumerators" = callPackage @@ -265451,24 +264909,22 @@ self: { "snowchecked" = callPackage ({ mkDerivation, base, bytestring, data-default, deepseq, hedgehog - , text, text-conversions, time, wide-word + , text, text-conversions, time, unliftio, wide-word }: mkDerivation { pname = "snowchecked"; - version = "0.0.1.2"; - sha256 = "1dxj23aa2gacf5gjb53bqvy7rfv12b5y8aqijvvj436lzabrlarc"; + version = "0.0.2.0"; + sha256 = "0n0pi92mjyg2jk0h1jbiyj8ib6jzgnkzfmnvrz41r6gd189hkn7a"; libraryHaskellDepends = [ base bytestring data-default deepseq text text-conversions time wide-word ]; testHaskellDepends = [ base bytestring data-default deepseq hedgehog text text-conversions - time wide-word + time unliftio wide-word ]; description = "A checksummed variation on Twitter's Snowflake UID generation algorithm"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "snowflake" = callPackage @@ -265590,6 +265046,7 @@ self: { ]; description = "SOAP client tools"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "soap-openssl" = callPackage @@ -265608,6 +265065,7 @@ self: { ]; description = "TLS-enabled SOAP transport (using openssl bindings)"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "soap-tls" = callPackage @@ -265627,6 +265085,7 @@ self: { ]; description = "TLS-enabled SOAP transport (using tls package)"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "sock2stream" = callPackage @@ -265820,10 +265279,8 @@ self: { }: mkDerivation { pname = "sockets"; - version = "0.5.0.0"; - sha256 = "0pxrdxmiqyp5xs24sp22b4rldhzm1rahkdq5lc24m30g4p609xa3"; - revision = "1"; - editedCabalFile = "1ji60m0wj3jwdfwdjaxzic41rwdnq72m9xspn64f66c872lx137d"; + version = "0.6.1.0"; + sha256 = "0isnl0vzdm95fgpjpib6ivgwma8acyqc41020lqa3bdzx82whcsy"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -265862,8 +265319,6 @@ self: { ]; description = "Support for the Sockets and Pipes book"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "socketson" = callPackage @@ -265890,7 +265345,6 @@ self: { description = "A small websocket backend provider"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "socks" = callPackage @@ -265968,7 +265422,6 @@ self: { ]; description = "Generate CSV Exports of your Solana Staking Rewards"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "solana-staking-csvs"; }) {}; @@ -265983,6 +265436,8 @@ self: { libraryHaskellDepends = [ base time ]; description = "Simple library for solar calculations"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "solga" = callPackage @@ -266145,7 +265600,6 @@ self: { license = "GPL"; hydraPlatforms = lib.platforms.none; mainProgram = "svdump"; - broken = true; }) {}; "sop-core" = callPackage @@ -266342,6 +265796,7 @@ self: { ]; description = "Approximate a song from other pieces of sound"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "sound-collage"; }) {}; @@ -266356,7 +265811,6 @@ self: { executableHaskellDepends = [ base containers parseargs WAVE ]; description = "Audio delay line"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "delay"; }) {}; @@ -266371,7 +265825,6 @@ self: { executableHaskellDepends = [ base split WAVE ]; description = "sound generator"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "soundgen"; }) {}; @@ -266497,6 +265950,7 @@ self: { libraryPkgconfigDepends = [ sox ]; description = "Write, read, convert audio signals using libsox"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) sox;}; "soyuz" = callPackage @@ -266669,7 +266123,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "A simple programming and debugging environment"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; + badPlatforms = lib.platforms.darwin; mainProgram = "spade"; }) {}; @@ -266987,7 +266441,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "spartacon"; - broken = true; }) {}; "spata" = callPackage @@ -267020,6 +266473,7 @@ self: { ]; description = "3d math including quaternions/euler angles/dcms and utility functions"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "spatial-rotations" = callPackage @@ -267649,7 +267103,6 @@ self: { description = "B-Splines, other splines, and NURBS"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "splint" = callPackage @@ -267661,6 +267114,8 @@ self: { libraryHaskellDepends = [ base containers ghc hlint stm ]; description = "HLint as a GHC source plugin"; license = lib.licenses.isc; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "split" = callPackage @@ -267716,6 +267171,7 @@ self: { ]; description = "Split a big audio file into pieces at positions of silence"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "split-record"; }) {}; @@ -267757,22 +267213,6 @@ self: { }) {testu01 = null;}; "splitmix-distributions" = callPackage - ({ mkDerivation, base, containers, erf, exceptions, hspec, mtl - , splitmix, transformers - }: - mkDerivation { - pname = "splitmix-distributions"; - version = "0.9.0.0"; - sha256 = "0y6v93kgbldkf9pznrfy8848njy7cln7bd3nrx2b7dmrz6yd4rpz"; - libraryHaskellDepends = [ - base containers erf exceptions mtl splitmix transformers - ]; - testHaskellDepends = [ base erf hspec mtl splitmix transformers ]; - description = "Random samplers for some common distributions, based on splitmix"; - license = lib.licenses.bsd3; - }) {}; - - "splitmix-distributions_1_0_0" = callPackage ({ mkDerivation, base, containers, erf, exceptions, hspec, mtl , splitmix, transformers }: @@ -267786,7 +267226,6 @@ self: { testHaskellDepends = [ base erf hspec mtl splitmix transformers ]; description = "Random samplers for some common distributions, based on splitmix"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "splitter" = callPackage @@ -268011,7 +267450,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "sproxy"; - broken = true; }) {}; "sproxy-web" = callPackage @@ -268039,7 +267477,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "sproxy-web"; - broken = true; }) {}; "sproxy2" = callPackage @@ -268065,6 +267502,7 @@ self: { ]; description = "Secure HTTP proxy for authenticating users via OAuth2"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "sproxy2"; }) {}; @@ -268272,24 +267710,25 @@ self: { "sqlite-easy" = callPackage ({ mkDerivation, base, bytestring, direct-sqlite, hspec - , hspec-discover, migrant-core, resource-pool, text + , hspec-discover, migrant-core, mtl, resource-pool, text, unliftio + , unliftio-core }: mkDerivation { pname = "sqlite-easy"; - version = "0.1.0.0"; - sha256 = "0i971dvfsdxpm6chxbc53flcw8gyk45nsp8pm0q2avl8p9sab05f"; - revision = "1"; - editedCabalFile = "0b3sa10mk3c2gjpsgdnylb3iqpwycfnhpscqhi68s0vfvq2ph9w8"; + version = "0.2.0.1"; + sha256 = "03sgw1g1iqkf1rv3dz5y9jh7z6iripx8dz9cs5ixznislsxkmg5l"; libraryHaskellDepends = [ - base bytestring direct-sqlite migrant-core resource-pool text + base bytestring direct-sqlite migrant-core mtl resource-pool text + unliftio-core ]; testHaskellDepends = [ - base direct-sqlite hspec hspec-discover text + base direct-sqlite hspec hspec-discover text unliftio ]; testToolDepends = [ hspec-discover ]; description = "A primitive yet easy to use sqlite library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "sqlite-simple" = callPackage @@ -268332,13 +267771,12 @@ self: { }: mkDerivation { pname = "sqlite-simple-interpolate"; - version = "0.1"; - sha256 = "0cjkk3zy3kasddkicwy8wklcj7i6bg779b82f1liaimsiwnmjpf3"; - revision = "1"; - editedCabalFile = "04dpspiia4mlpwfpdnsnyb24qsvy7da25rcbbyxyavadz3ri44hm"; + version = "0.1.1"; + sha256 = "1vi43mm6lwdpsq0r2gs7nsrn4g88r3q4d8g5gmm7al8ziz9c39vq"; libraryHaskellDepends = [ base haskell-src-meta mtl parsec sqlite-simple template-haskell ]; + testHaskellDepends = [ base sqlite-simple ]; description = "Interpolated SQLite queries via quasiquotation"; license = lib.licenses.bsd3; }) {}; @@ -268423,8 +267861,8 @@ self: { }: mkDerivation { pname = "squeal-postgresql"; - version = "0.9.0.0"; - sha256 = "1gd421zkpd5lg1dl94297dslq43pjl274ahdd947jjvgr6gr193n"; + version = "0.9.1.0"; + sha256 = "0jy2324j4jrv8nc7dks4286vmr2llbb8v7b32zqlrwndgyy41kkp"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -268449,6 +267887,7 @@ self: { ]; description = "Squeal PostgreSQL Library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "example"; maintainers = [ lib.maintainers.erictapen ]; }) {}; @@ -268467,6 +267906,7 @@ self: { ]; description = "LTree extension for Squeal"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "squeal-postgresql-uuid-ossp" = callPackage @@ -268478,6 +267918,7 @@ self: { libraryHaskellDepends = [ base squeal-postgresql ]; description = "UUID OSSP extension for Squeal"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "squeather" = callPackage @@ -268547,7 +267988,6 @@ self: { description = "Module limbo"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "srcinst" = callPackage @@ -268638,6 +268078,8 @@ self: { ]; description = "Dhall Encoder/Decoder for SRT"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "srt-formatting" = callPackage @@ -268656,6 +268098,25 @@ self: { license = lib.licenses.mit; }) {}; + "srv" = callPackage + ({ mkDerivation, async, base, bytestring, containers, directory + , raw-strings-qq, wai, wai-app-static, warp, warp-tls, yaml + }: + mkDerivation { + pname = "srv"; + version = "0.1.0.0"; + sha256 = "0bbiz8n8v8lscxzxdhqwppyvrsvapk5xilm35kah1bp0rs8mi1w0"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + async base bytestring containers directory raw-strings-qq wai + wai-app-static warp warp-tls yaml + ]; + description = "A simple web server for local usage"; + license = lib.licenses.asl20; + mainProgram = "srv"; + }) {}; + "sscan" = callPackage ({ mkDerivation, async, base, brick, directory, filepath, microlens , microlens-th, process, temporary, text, time, vty @@ -269044,8 +268505,8 @@ self: { pname = "stack"; version = "2.9.1"; sha256 = "01020dx89m07qmjs58vs2kidhkzq3106md08w6c65bzxvlf6kcwk"; - revision = "3"; - editedCabalFile = "1i0ddb17kzxvlv3xpgyi3acsi21h6iadwwv21ih063cdk9ilysxg"; + revision = "4"; + editedCabalFile = "1ixa4k1jcsrq8i6zd5g483sp86kp87i2bifd5vfvpjyfzayb1n3d"; configureFlags = [ "-fdisable-git-info" "-fhide-dependency-versions" "-fsupported-build" @@ -269118,6 +268579,103 @@ self: { maintainers = [ lib.maintainers.cdepillabout ]; }) {}; + "stack_2_9_3" = callPackage + ({ mkDerivation, aeson, annotated-wl-pprint, ansi-terminal, array + , async, attoparsec, base, base64-bytestring, bytestring, Cabal + , casa-client, casa-types, colour, conduit, conduit-extra + , containers, cryptonite, cryptonite-conduit, deepseq, directory + , echo, exceptions, extra, file-embed, filelock, filepath, fsnotify + , generic-deriving, hackage-security, hashable, hi-file-parser + , hpack, hpc, hspec, hspec-discover, http-client, http-client-tls + , http-conduit, http-download, http-types, memory, microlens + , mintty, mono-traversable, mtl, mustache, neat-interpolation + , network-uri, open-browser, optparse-applicative, pantry, path + , path-io, persistent, persistent-sqlite, persistent-template + , pretty, primitive, process, project-template, QuickCheck, random + , raw-strings-qq, retry, rio, rio-prettyprint, semigroups + , smallcheck, split, stm, streaming-commons, tar, template-haskell + , temporary, text, text-metrics, th-reify-many, time, tls + , transformers, typed-process, unicode-transforms, unix + , unix-compat, unliftio, unordered-containers, vector, yaml + , zip-archive, zlib + }: + mkDerivation { + pname = "stack"; + version = "2.9.3"; + sha256 = "1p7j05cm9y3vbj5wkcjsia65agfzyd2r8r1fvd4l4qnx4yr0qw64"; + configureFlags = [ + "-fdisable-git-info" "-fhide-dependency-versions" + "-fsupported-build" + ]; + isLibrary = true; + isExecutable = true; + setupHaskellDepends = [ base Cabal filepath ]; + libraryHaskellDepends = [ + aeson annotated-wl-pprint ansi-terminal array async attoparsec base + base64-bytestring bytestring Cabal casa-client casa-types colour + conduit conduit-extra containers cryptonite cryptonite-conduit + deepseq directory echo exceptions extra file-embed filelock + filepath fsnotify generic-deriving hackage-security hashable + hi-file-parser hpack hpc http-client http-client-tls http-conduit + http-download http-types memory microlens mintty mono-traversable + mtl mustache neat-interpolation network-uri open-browser + optparse-applicative pantry path path-io persistent + persistent-sqlite persistent-template pretty primitive process + project-template random retry rio rio-prettyprint semigroups split + stm streaming-commons tar template-haskell temporary text + text-metrics th-reify-many time tls transformers typed-process + unicode-transforms unix unix-compat unliftio unordered-containers + vector yaml zip-archive zlib + ]; + executableHaskellDepends = [ + aeson annotated-wl-pprint ansi-terminal array async attoparsec base + base64-bytestring bytestring Cabal casa-client casa-types colour + conduit conduit-extra containers cryptonite cryptonite-conduit + deepseq directory echo exceptions extra file-embed filelock + filepath fsnotify generic-deriving hackage-security hashable + hi-file-parser hpack hpc http-client http-client-tls http-conduit + http-download http-types memory microlens mintty mono-traversable + mtl mustache neat-interpolation network-uri open-browser + optparse-applicative pantry path path-io persistent + persistent-sqlite persistent-template pretty primitive process + project-template random retry rio rio-prettyprint semigroups split + stm streaming-commons tar template-haskell temporary text + text-metrics th-reify-many time tls transformers typed-process + unicode-transforms unix unix-compat unliftio unordered-containers + vector yaml zip-archive zlib + ]; + testHaskellDepends = [ + aeson annotated-wl-pprint ansi-terminal array async attoparsec base + base64-bytestring bytestring Cabal casa-client casa-types colour + conduit conduit-extra containers cryptonite cryptonite-conduit + deepseq directory echo exceptions extra file-embed filelock + filepath fsnotify generic-deriving hackage-security hashable + hi-file-parser hpack hpc hspec http-client http-client-tls + http-conduit http-download http-types memory microlens mintty + mono-traversable mtl mustache neat-interpolation network-uri + open-browser optparse-applicative pantry path path-io persistent + persistent-sqlite persistent-template pretty primitive process + project-template QuickCheck random raw-strings-qq retry rio + rio-prettyprint semigroups smallcheck split stm streaming-commons + tar template-haskell temporary text text-metrics th-reify-many time + tls transformers typed-process unicode-transforms unix unix-compat + unliftio unordered-containers vector yaml zip-archive zlib + ]; + testToolDepends = [ hspec-discover ]; + doCheck = false; + preCheck = "export HOME=$TMPDIR"; + postInstall = '' + exe=$out/bin/stack + mkdir -p $out/share/bash-completion/completions + $exe --bash-completion-script $exe >$out/share/bash-completion/completions/stack + ''; + description = "The Haskell Tool Stack"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "stack"; + maintainers = [ lib.maintainers.cdepillabout ]; + }) {}; + "stack-all" = callPackage ({ mkDerivation, aeson, base, cached-json-file, config-ini , directory, extra, filepath, http-query, process, simple-cmd @@ -269225,7 +268783,6 @@ self: { license = lib.licenses.isc; hydraPlatforms = lib.platforms.none; mainProgram = "shc"; - broken = true; }) {}; "stack-lib" = callPackage @@ -269900,34 +269457,36 @@ self: { ]; description = "Program to fold GHC prof files into flamegraph input"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "stackcollapse-ghc"; + broken = true; }) {}; "stackctl" = callPackage ({ mkDerivation, aeson, aeson-casing, aeson-pretty, amazonka , amazonka-cloudformation, amazonka-core, amazonka-ec2 , amazonka-lambda, amazonka-sts, base, Blammo, bytestring, cfn-flip - , conduit, containers, errors, exceptions, extra, fast-logger - , filepath, Glob, hspec, lens, lens-aeson, monad-logger - , optparse-applicative, resourcet, rio, text, time, unliftio - , unliftio-core, unordered-containers, uuid, yaml + , conduit, containers, errors, exceptions, extra, filepath, Glob + , hspec, lens, lens-aeson, monad-logger, mtl, optparse-applicative + , QuickCheck, resourcet, rio, text, time, unliftio, unliftio-core + , unordered-containers, uuid, yaml }: mkDerivation { pname = "stackctl"; - version = "1.1.0.3"; - sha256 = "0vvhvyvc6dz8l0df3f14qiy5851n2mv45gvjyz1cq94f44higfjw"; + version = "1.1.3.0"; + sha256 = "16skijv82199x4q2w563bk9xcmwd4i6mdavdr89p16cf8mwqrr7m"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson aeson-casing aeson-pretty amazonka amazonka-cloudformation amazonka-core amazonka-ec2 amazonka-lambda amazonka-sts base Blammo bytestring cfn-flip conduit containers errors exceptions extra - fast-logger filepath Glob lens lens-aeson monad-logger - optparse-applicative resourcet rio text time unliftio unliftio-core - unordered-containers uuid yaml + filepath Glob lens lens-aeson monad-logger mtl optparse-applicative + resourcet rio text time unliftio unliftio-core unordered-containers + uuid yaml ]; executableHaskellDepends = [ base ]; - testHaskellDepends = [ base hspec yaml ]; + testHaskellDepends = [ base bytestring hspec mtl QuickCheck yaml ]; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "stackctl"; @@ -269978,6 +269537,8 @@ self: { ]; description = "GHC.Generics style staged generics"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "stagen" = callPackage @@ -270487,8 +270048,8 @@ self: { }: mkDerivation { pname = "statistics"; - version = "0.16.1.0"; - sha256 = "000rkq5niabbdq0adca81rd19pgazvbnpww8cakhxdh5frf2lj78"; + version = "0.16.1.2"; + sha256 = "15yr0w25dqaqz16635qxkxvr6nj6mkjj9pl7wzw5yr3pn84xjryq"; libraryHaskellDepends = [ aeson async base binary data-default-class deepseq dense-linear-algebra math-functions mwc-random parallel primitive @@ -270846,6 +270407,19 @@ self: { broken = true; }) {}; + "stdcxx" = callPackage + ({ mkDerivation, base, fficxx, fficxx-runtime, template-haskell }: + mkDerivation { + pname = "stdcxx"; + version = "0.7.0.0"; + sha256 = "0r2zm4y1rwpv5pwnlqc51hy746j6hnvhj44vagyxij6ja7xhqxsg"; + libraryHaskellDepends = [ + base fficxx fficxx-runtime template-haskell + ]; + description = "Binding to Standard Template Library C++"; + license = lib.licenses.bsd2; + }) {}; + "stdf" = callPackage ({ mkDerivation, aeson, base, base64-bytestring, binary, bytestring , containers, data-binary-ieee754, split, text, time, unix-time @@ -270914,38 +270488,37 @@ self: { }) {}; "steeloverseer" = callPackage - ({ mkDerivation, aeson, ansi-terminal, async, base, bytestring - , containers, directory, exceptions, filepath, fsnotify, hspec - , managed, mtl, optparse-applicative, process, regex-tdfa - , semigroups, stm, streaming, text, unix, yaml + ({ mkDerivation, aeson, aeson-compat, ansi-terminal, async, base + , bytestring, containers, directory, exceptions, filepath, fsnotify + , hspec, hspec-discover, managed, mtl, optparse-applicative + , process, regex-tdfa, semigroups, stm, streaming, text, unix, yaml }: mkDerivation { pname = "steeloverseer"; - version = "2.1.0.0"; - sha256 = "1l2pfk6fdnc2ssmcjmwj8w5wfk6ra4n880nbxr670kzrlnr2vqg1"; - revision = "1"; - editedCabalFile = "0vb2k7c02gmnn03zq84pb9ycsl8nkahkddwzn3nh0jsgb2jc9pln"; + version = "2.1.0.1"; + sha256 = "1zz30i6icz3pghrvcyvp8xfzdf3zn3zwqc53chpksb8mkm26fngp"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson ansi-terminal async base bytestring containers exceptions - fsnotify managed mtl process regex-tdfa semigroups stm streaming - text unix yaml + aeson aeson-compat ansi-terminal async base bytestring containers + exceptions fsnotify managed mtl process regex-tdfa semigroups stm + streaming text unix yaml ]; + libraryToolDepends = [ hspec-discover ]; executableHaskellDepends = [ - async base bytestring directory exceptions filepath fsnotify - managed mtl optparse-applicative regex-tdfa semigroups stm + aeson-compat async base bytestring directory exceptions filepath + fsnotify managed mtl optparse-applicative regex-tdfa semigroups stm streaming text yaml ]; + executableToolDepends = [ hspec-discover ]; testHaskellDepends = [ - async base bytestring exceptions fsnotify hspec managed mtl - regex-tdfa semigroups stm streaming text yaml + aeson-compat async base bytestring exceptions fsnotify hspec + managed mtl regex-tdfa semigroups stm streaming text yaml ]; + testToolDepends = [ hspec-discover ]; description = "A file watcher and development tool"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "sos"; - broken = true; }) {}; "stego-uuid" = callPackage @@ -271287,6 +270860,8 @@ self: { testHaskellDepends = [ base hspec stm ]; description = "A library for constructing incremental computations"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "stm-io-hooks" = callPackage @@ -271423,6 +270998,7 @@ self: { testHaskellDepends = [ async base QuickCheck random Unique ]; description = "STM wrapper around Control.Concurrent.Supply."; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "stm-tlist" = callPackage @@ -271546,20 +271122,21 @@ self: { }) {}; "stooq-api" = callPackage - ({ mkDerivation, aeson, base, bytestring, lens, stringsearch, text - , time, utf8-string, vector, wreq + ({ mkDerivation, base, bytestring, cassava, lens, text, time + , utf8-string, vector, wreq }: mkDerivation { pname = "stooq-api"; - version = "0.3.1.0"; - sha256 = "0a2hnhrb00h52z0717zbx1ha4i5aixps0b9n3sw7svdjvz3dygkp"; + version = "0.4.1.0"; + sha256 = "0kjkccqwfr9bdlca8mw7ryw0jr88zs9ap9s9f2idzbdqdqavidiq"; libraryHaskellDepends = [ - aeson base bytestring lens stringsearch text time utf8-string - vector wreq + base bytestring cassava lens text time utf8-string vector wreq ]; doHaddock = false; description = "A simple wrapper around stooq.pl API for downloading market data."; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "stopwatch" = callPackage @@ -271695,6 +271272,8 @@ self: { ]; description = "Fast, packed, strict storable arrays with a list interface like ByteString"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "storablevector-carray" = callPackage @@ -271706,6 +271285,7 @@ self: { libraryHaskellDepends = [ base carray storablevector utility-ht ]; description = "Conversion between storablevector and carray"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "storablevector-streamfusion" = callPackage @@ -272062,7 +271642,6 @@ self: { description = "Programmatically edit MIDI event streams via ALSA"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "streaming" = callPackage @@ -272493,6 +272072,8 @@ self: { pname = "streaming-postgresql-simple"; version = "0.2.0.5"; sha256 = "1gaj099hxdvyzmzz6z0s1kzv3qqv3py609jz7cp2j3f6497dhdqa"; + revision = "1"; + editedCabalFile = "11c8gc25bzqxa4mxj0shry5hhhll8i3yv6bspznl1d7gz3pxhrp4"; libraryHaskellDepends = [ base bytestring exceptions postgresql-libpq postgresql-simple resourcet safe-exceptions streaming transformers @@ -272569,8 +272150,6 @@ self: { libraryPkgconfigDepends = [ zlib ]; description = "http, attoparsec, pipes and other utilities for the streaming libraries"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {inherit (pkgs) zlib;}; "streaming-wai" = callPackage @@ -272668,6 +272247,8 @@ self: { testSystemDepends = [ archive ]; description = "Stream data from archives using the streamly library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {archive = null;}; "streamly-binary" = callPackage @@ -272697,8 +272278,8 @@ self: { pname = "streamly-bytestring"; version = "0.1.4"; sha256 = "1qwgrxm2x46951si18sbmqhq4fik26l07kmspv23m9q3drn0mklc"; - revision = "3"; - editedCabalFile = "0jbiq6g025qyhvl05f0shvnak4jnpxngzjz1n73c8hnjb47kzc21"; + revision = "4"; + editedCabalFile = "1mzrj7bkmvz27svxjaknrgvxwvz9zpw0ifvpvdbi7idlfmh01mqa"; libraryHaskellDepends = [ base bytestring streamly ]; testHaskellDepends = [ base bytestring directory filepath hspec hspec-discover @@ -272710,6 +272291,8 @@ self: { ]; description = "Library for streamly and bytestring interoperation"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "streamly-cassava" = callPackage @@ -272795,6 +272378,8 @@ self: { testSystemDepends = [ lmdb ]; description = "Stream data to or from LMDB databases using the streamly library"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) lmdb;}; "streamly-lz4" = callPackage @@ -272835,6 +272420,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Posix related streaming APIs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "streamly-process" = callPackage @@ -272874,15 +272460,15 @@ self: { }) {}; "streams" = callPackage - ({ mkDerivation, adjunctions, base, comonad, distributive - , semigroupoids, semigroups + ({ mkDerivation, adjunctions, base, boring, comonad, distributive + , semigroupoids }: mkDerivation { pname = "streams"; - version = "3.3"; - sha256 = "0h2fjlcsqnwwsqdk371m6drb119rx76b122mmwkd7zl3d86zhcr9"; + version = "3.3.1"; + sha256 = "11aggnf2pcjhhm8h69dhgysg64kyzpw9d493mh2lkcc7w4v4wcig"; libraryHaskellDepends = [ - adjunctions base comonad distributive semigroupoids semigroups + adjunctions base boring comonad distributive semigroupoids ]; description = "Various Haskell 2010 stream comonads"; license = lib.licenses.bsd3; @@ -272940,6 +272526,8 @@ self: { ]; description = "Core components of \"strelka\""; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "strelka-wai" = callPackage @@ -272956,6 +272544,7 @@ self: { ]; description = "WAI compatibility layer for \"strelka\""; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "strict" = callPackage @@ -273020,40 +272609,40 @@ self: { "strict-containers" = callPackage ({ mkDerivation, array, base, base-orphans, binary, ChasingBottoms , containers, deepseq, hashable, HUnit, indexed-traversable - , primitive, QuickCheck, random, strict, tasty, tasty-hunit - , tasty-quickcheck, template-haskell, test-framework - , test-framework-hunit, test-framework-quickcheck2, transformers + , nothunks, primitive, QuickCheck, random, strict, tasty + , tasty-hunit, tasty-quickcheck, template-haskell, transformers , unordered-containers, vector, vector-binary-instances }: mkDerivation { pname = "strict-containers"; - version = "0.1"; - sha256 = "0rb5mhz1f1g79c7c85q6pnars7qs3qzyl2gsc48p9sd2739q5nzs"; + version = "0.2"; + sha256 = "128aw17c2m3rh2v23c2vdgk7f7rk11plwkzq2carrm1x5nvhrki7"; libraryHaskellDepends = [ array base binary containers deepseq hashable indexed-traversable - primitive strict unordered-containers vector + primitive strict template-haskell unordered-containers vector vector-binary-instances ]; testHaskellDepends = [ - array base base-orphans ChasingBottoms containers deepseq hashable - HUnit primitive QuickCheck random tasty tasty-hunit - tasty-quickcheck template-haskell test-framework - test-framework-hunit test-framework-quickcheck2 transformers - unordered-containers vector + array base base-orphans ChasingBottoms containers deepseq HUnit + nothunks primitive QuickCheck random tasty tasty-hunit + tasty-quickcheck template-haskell transformers vector ]; description = "Strict containers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "strict-containers-lens" = callPackage ({ mkDerivation, base, hashable, lens, strict-containers }: mkDerivation { pname = "strict-containers-lens"; - version = "0.1"; - sha256 = "0162vqkwm9z1pyizvs76fbraw6z43w8j1k7ag25l9lv67gydl4c1"; + version = "0.2"; + sha256 = "08m4brq8sbdi44cw3klakaw3dax3y9x94kxniv8w6dyqmf5as38w"; libraryHaskellDepends = [ base hashable lens strict-containers ]; description = "Strict containers - Lens instances"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "strict-containers-serialise" = callPackage @@ -273062,13 +272651,14 @@ self: { }: mkDerivation { pname = "strict-containers-serialise"; - version = "0.1"; - sha256 = "17hsb90awsrgp83nkzjyr51wz7z5v4fii862arqfjkjqm6scb4d3"; + version = "0.2"; + sha256 = "10y0pcvxidq39z284ffac4sl6yg6cq00x1mmdnwcbaxiq8xhm3hk"; libraryHaskellDepends = [ base cborg hashable serialise strict-containers ]; description = "Strict containers - Serialise instances"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "strict-data" = callPackage @@ -273122,6 +272712,17 @@ self: { license = lib.licenses.bsd3; }) {}; + "strict-impl-params" = callPackage + ({ mkDerivation, base, ghc, ghc-prim, template-haskell }: + mkDerivation { + pname = "strict-impl-params"; + version = "1.0.0"; + sha256 = "0qbc5vk8079vcwxj8sgy696jd629arsws92bcv3vcavnkvzz696c"; + libraryHaskellDepends = [ base ghc ghc-prim template-haskell ]; + description = "Plugin for making top-level implicit parameters strict"; + license = lib.licenses.mit; + }) {}; + "strict-io" = callPackage ({ mkDerivation, base, deepseq, extensible-exceptions }: mkDerivation { @@ -273420,6 +273021,35 @@ self: { license = lib.licenses.bsd3; }) {}; + "string-interpolate_0_3_2_0" = callPackage + ({ mkDerivation, base, bytestring, criterion, deepseq, formatting + , haskell-src-exts, haskell-src-meta, hspec, hspec-core + , interpolate, neat-interpolation, QuickCheck, quickcheck-instances + , quickcheck-text, quickcheck-unicode, split, template-haskell + , text, text-conversions, unordered-containers, utf8-string + }: + mkDerivation { + pname = "string-interpolate"; + version = "0.3.2.0"; + sha256 = "1sdd472rvykrqkv76745vavpycvb0dzcaxs3yw9dfczaxaz16xws"; + libraryHaskellDepends = [ + base bytestring haskell-src-exts haskell-src-meta split + template-haskell text text-conversions utf8-string + ]; + testHaskellDepends = [ + base bytestring hspec hspec-core QuickCheck quickcheck-instances + quickcheck-text quickcheck-unicode template-haskell text + unordered-containers + ]; + benchmarkHaskellDepends = [ + base bytestring criterion deepseq formatting interpolate + neat-interpolation QuickCheck text + ]; + description = "Haskell string/text/bytestring interpolation that just works"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "string-interpreter" = callPackage ({ mkDerivation, base, cli-arguments, phonetic-languages-basis , phonetic-languages-permutations-array @@ -273562,18 +273192,25 @@ self: { }) {}; "string-variants" = callPackage - ({ mkDerivation, aeson, base, bytestring, mono-traversable - , QuickCheck, refined, refinery, string-conversions - , template-haskell, text + ({ mkDerivation, aeson, base, bytestring, hedgehog, hspec + , hspec-core, hspec-discover, hspec-expectations, hspec-hedgehog + , HUnit, mono-traversable, QuickCheck, refined, refinery + , string-conversions, template-haskell, text }: mkDerivation { pname = "string-variants"; - version = "0.1.0.2"; - sha256 = "0lrcjx3ci2kd2347klkwz01cf8mhzfk91sl7301q44cf8fg42az4"; + version = "0.2.0.0"; + sha256 = "0rzxvqv6waggspqbph4n0q249v0h615965rqlbbhv8a3p87kmdcd"; libraryHaskellDepends = [ aeson base bytestring mono-traversable QuickCheck refined refinery string-conversions template-haskell text ]; + testHaskellDepends = [ + aeson base bytestring hedgehog hspec hspec-core hspec-expectations + hspec-hedgehog HUnit mono-traversable QuickCheck refined refinery + string-conversions template-haskell text + ]; + testToolDepends = [ hspec-discover ]; description = "Constrained text newtypes"; license = lib.licenses.mit; }) {}; @@ -273646,6 +273283,8 @@ self: { libraryHaskellDepends = [ base bytestring text ]; description = "Functions for working with strings, including Text, ByteString, etc"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "stringsearch" = callPackage @@ -273787,6 +273426,7 @@ self: { description = "Unofficial Stripe client"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "stripe-http-client" = callPackage @@ -273862,8 +273502,6 @@ self: { ]; description = "Unofficial Stripe servant types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "stripe-signature" = callPackage @@ -273988,6 +273626,8 @@ self: { testToolDepends = [ tasty-discover ]; description = "Strongly typed paths in Haskell"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "strongswan-sql" = callPackage @@ -274030,10 +273670,8 @@ self: { }: mkDerivation { pname = "strongweak"; - version = "0.3.1"; - sha256 = "1n46qw6hkdfbsfpyhpkalkw19fx152925hnpwmm2gr0rjzvwyn2p"; - revision = "2"; - editedCabalFile = "004as88cns3s5jk1c4467g0jdvqp6f9q9xf29cbx0x9d6b911v8x"; + version = "0.3.2"; + sha256 = "1xmqacfv4xqx1v7xdiflmc4am9366jhpdv1r7hldmh1ihw7jkfc3"; libraryHaskellDepends = [ base either prettyprinter refined vector vector-sized ]; @@ -274044,8 +273682,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Convert between strong and weak representations of types"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "strptime" = callPackage @@ -274193,8 +273829,10 @@ self: { ]; description = "Structured editing Emacs mode for Haskell"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "structured-haskell-mode"; maintainers = [ lib.maintainers.peti ]; + broken = true; }) {}; "structured-mongoDB" = callPackage @@ -274405,7 +274043,7 @@ self: { "stylish-haskell" = callPackage ({ mkDerivation, aeson, base, bytestring, Cabal, containers - , directory, file-embed, filepath, ghc-lib-parser + , directory, file-embed, filepath, ghc, ghc-boot, ghc-boot-th , ghc-lib-parser-ex, HsYAML, HsYAML-aeson, HUnit, mtl , optparse-applicative, random, regex-tdfa, strict, syb , test-framework, test-framework-hunit, text @@ -274418,18 +274056,19 @@ self: { isExecutable = true; libraryHaskellDepends = [ aeson base bytestring Cabal containers directory file-embed - filepath ghc-lib-parser ghc-lib-parser-ex HsYAML HsYAML-aeson mtl - regex-tdfa syb text + filepath ghc ghc-boot ghc-boot-th ghc-lib-parser-ex HsYAML + HsYAML-aeson mtl regex-tdfa syb text ]; executableHaskellDepends = [ aeson base bytestring Cabal containers directory file-embed - filepath ghc-lib-parser ghc-lib-parser-ex HsYAML HsYAML-aeson mtl - optparse-applicative regex-tdfa strict syb text + filepath ghc ghc-boot ghc-boot-th ghc-lib-parser-ex HsYAML + HsYAML-aeson mtl optparse-applicative regex-tdfa strict syb text ]; testHaskellDepends = [ aeson base bytestring Cabal containers directory file-embed - filepath ghc-lib-parser ghc-lib-parser-ex HsYAML HsYAML-aeson HUnit - mtl random regex-tdfa syb test-framework test-framework-hunit text + filepath ghc ghc-boot ghc-boot-th ghc-lib-parser-ex HsYAML + HsYAML-aeson HUnit mtl random regex-tdfa syb test-framework + test-framework-hunit text ]; description = "Haskell code prettifier"; license = lib.licenses.bsd3; @@ -274655,8 +274294,6 @@ self: { libraryHaskellDepends = [ base ]; description = "Allows to split lists into sublists with some patterns by quantity"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "submark" = callPackage @@ -274678,7 +274315,9 @@ self: { ]; description = "Extract a part from CommonMark/Markdown docs"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "submark"; + broken = true; }) {}; "subnet" = callPackage @@ -274973,6 +274612,8 @@ self: { testHaskellDepends = [ base hspec template-haskell ]; description = "Library for reducing the boilerplate involved with sum types"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "summer" = callPackage @@ -274985,6 +274626,8 @@ self: { testHaskellDepends = [ base ]; description = "An implementation of extensible products and sums"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "summoner" = callPackage @@ -275054,6 +274697,7 @@ self: { description = "A Haskell interface to SUMP-compatible logic analyzers"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "sundown" = callPackage @@ -275457,7 +275101,6 @@ self: { libraryHaskellDepends = [ base supply-chain-core ]; description = "Composable request-response pipelines"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; }) {}; "supply-chain-core" = callPackage @@ -275470,8 +275113,6 @@ self: { testHaskellDepends = [ base tasty tasty-hedgehog tasty-hunit ]; description = "Composable request-response pipelines"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "surjective" = callPackage @@ -275613,7 +275254,9 @@ self: { executableToolDepends = [ alex happy ]; description = "SystemVerilog to Verilog conversion"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "sv2v"; + broken = true; }) {}; "svfactor" = callPackage @@ -275681,8 +275324,8 @@ self: { ({ mkDerivation, base, blaze-markup, blaze-svg, directory, text }: mkDerivation { pname = "svg-icons"; - version = "2.5.0.1"; - sha256 = "0iwrs53n6f4l2fqybamghbk5ha1w8vspiha6cnjx49hzljsjz738"; + version = "2.6.0.0"; + sha256 = "13vsyv1bnxp45mllfrai09n4f5a131l8v77jbf2vy4f0wzmpswpm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -275795,7 +275438,9 @@ self: { ]; description = "A tool to prune unused symbols from icon SVG files"; license = lib.licenses.gpl3Plus; + hydraPlatforms = lib.platforms.none; mainProgram = "svgsym"; + broken = true; }) {}; "svgutils" = callPackage @@ -276349,6 +275994,7 @@ self: { description = "A modern testing framework for Haskell with good defaults and advanced testing features"; license = "unknown"; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "sydtest-aeson" = callPackage @@ -276662,12 +276308,12 @@ self: { }: mkDerivation { pname = "sydtest-webdriver"; - version = "0.0.0.0"; - sha256 = "030qv68sb075lqwz449yvliwg356ggn3ab90zcad6hc6hyz8x3vp"; + version = "0.0.0.1"; + sha256 = "1rf12cg494z302bd7yanylzayakqj8xwbj8blb0f512wvfy63cia"; libraryHaskellDepends = [ - aeson base http-client http-types monad-control mtl network - network-uri path path-io port-utils sydtest sydtest-typed-process - sydtest-wai transformers-base typed-process webdriver + aeson base http-client monad-control mtl network network-uri path + path-io port-utils sydtest sydtest-typed-process sydtest-wai + transformers-base typed-process webdriver ]; testHaskellDepends = [ base http-types network-uri sydtest sydtest-wai wai @@ -277019,8 +276665,6 @@ self: { ]; description = "Streaming support through pipes for symantic-http"; license = lib.licenses.gpl3Only; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "symantic-http-server" = callPackage @@ -277636,7 +277280,6 @@ self: { description = "Audio signal processing coded in Haskell"; license = "GPL"; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "synthesizer-alsa" = callPackage @@ -277660,6 +277303,7 @@ self: { description = "Control synthesizer effects via ALSA/MIDI"; license = lib.licenses.gpl3Only; badPlatforms = lib.platforms.darwin; + hydraPlatforms = lib.platforms.none; }) {}; "synthesizer-core" = callPackage @@ -277694,6 +277338,7 @@ self: { ]; description = "Audio signal processing coded in Haskell: Low level part"; license = "GPL"; + hydraPlatforms = lib.platforms.none; }) {}; "synthesizer-dimensional" = callPackage @@ -277714,6 +277359,7 @@ self: { ]; description = "Audio signal processing with static physical dimensions"; license = "GPL"; + hydraPlatforms = lib.platforms.none; }) {}; "synthesizer-filter" = callPackage @@ -277730,6 +277376,7 @@ self: { ]; description = "Audio signal processing coded in Haskell: Filter networks"; license = "GPL"; + hydraPlatforms = lib.platforms.none; }) {}; "synthesizer-inference" = callPackage @@ -277808,6 +277455,7 @@ self: { ]; description = "Render audio signals from MIDI files or realtime messages"; license = "GPL"; + hydraPlatforms = lib.platforms.none; }) {}; "sys-auth-smbclient" = callPackage @@ -278410,7 +278058,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "tableaux.cgi"; - broken = true; }) {}; "tables" = callPackage @@ -278627,6 +278274,8 @@ self: { ]; description = "alternative package for processing of tag soups"; license = "GPL"; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tagged" = callPackage @@ -278986,6 +278635,7 @@ self: { ]; description = "Black magic tagsoup"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "tagstew"; }) {}; @@ -279651,7 +279301,9 @@ self: { testToolDepends = [ tasty-discover ]; description = "A command-line kanban board/task manager"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "taskell"; + broken = true; }) {}; "taskpool" = callPackage @@ -279679,8 +279331,8 @@ self: { }: mkDerivation { pname = "taskwarrior"; - version = "0.6.0.3"; - sha256 = "177ylpifmij5lld5xqy8fpfcm5w8ng2fh5hckr3m5z638kk3q10z"; + version = "0.6.0.4"; + sha256 = "0m6h0ra868n7azxdj00sbhv2i9r5wr5rs10cyrzda7ss5n94aq8v"; libraryHaskellDepends = [ aeson base bytestring containers process random text time uuid ]; @@ -279711,6 +279363,23 @@ self: { license = lib.licenses.mit; }) {}; + "tasty_1_4_3" = callPackage + ({ mkDerivation, ansi-terminal, base, containers + , optparse-applicative, stm, tagged, transformers, unix + }: + mkDerivation { + pname = "tasty"; + version = "1.4.3"; + sha256 = "006bf4gyc30i2gvb17hj1mzrh1kwnwf7l050x3f72wi6c2axl87l"; + libraryHaskellDepends = [ + ansi-terminal base containers optparse-applicative stm tagged + transformers unix + ]; + description = "Modern and extensible testing framework"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "tasty-ant-xml" = callPackage ({ mkDerivation, base, containers, directory, filepath , generic-deriving, ghc-prim, mtl, stm, tagged, tasty, transformers @@ -279760,8 +279429,38 @@ self: { }: mkDerivation { pname = "tasty-autocollect"; - version = "0.3.1.0"; - sha256 = "0cvg7010hxrixpz013fb8ky5jgvvqf3l8x8kiwj0b3a31v8lk82d"; + version = "0.3.2.0"; + sha256 = "1f2z08zclnz8kvxs67a1r1qfdb2j8nfjnvsj4434sl59inl6s9vx"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring containers directory filepath ghc tasty + tasty-expected-failure template-haskell text transformers + ]; + executableHaskellDepends = [ base text ]; + testHaskellDepends = [ + base bytestring containers directory explainable-predicates + filepath tasty tasty-golden tasty-hunit tasty-quickcheck temporary + text typed-process + ]; + description = "Autocollection of tasty tests"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "tasty-autocollect"; + broken = true; + }) {}; + + "tasty-autocollect_0_4_0" = callPackage + ({ mkDerivation, base, bytestring, containers, directory + , explainable-predicates, filepath, ghc, tasty + , tasty-expected-failure, tasty-golden, tasty-hunit + , tasty-quickcheck, template-haskell, temporary, text, transformers + , typed-process + }: + mkDerivation { + pname = "tasty-autocollect"; + version = "0.4.0"; + sha256 = "1nq5zaf3ly7n4mqprdgvgw2ixdxk7qdrl108ppncid43dfj560ik"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -279837,20 +279536,10 @@ self: { ]; description = "Check multiple items during a tasty test"; license = lib.licenses.isc; + hydraPlatforms = lib.platforms.none; }) {}; "tasty-dejafu" = callPackage - ({ mkDerivation, base, dejafu, random, tagged, tasty }: - mkDerivation { - pname = "tasty-dejafu"; - version = "2.0.0.9"; - sha256 = "0cqm88aihaf2y25m129r4dg80a7h9q1gj6pjbg1yd6wb2lxd6zga"; - libraryHaskellDepends = [ base dejafu random tagged tasty ]; - description = "Deja Fu support for the Tasty test framework"; - license = lib.licenses.mit; - }) {}; - - "tasty-dejafu_2_1_0_0" = callPackage ({ mkDerivation, base, dejafu, random, tagged, tasty }: mkDerivation { pname = "tasty-dejafu"; @@ -279859,31 +279548,29 @@ self: { libraryHaskellDepends = [ base dejafu random tagged tasty ]; description = "Deja Fu support for the Tasty test framework"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "tasty-discover" = callPackage - ({ mkDerivation, base, bytestring, containers, directory, filepath - , Glob, hedgehog, hspec, hspec-core, tasty, tasty-golden - , tasty-hedgehog, tasty-hspec, tasty-hunit, tasty-quickcheck - , tasty-smallcheck + ({ mkDerivation, base, containers, directory, filepath, Glob + , hedgehog, tasty, tasty-hedgehog, tasty-hspec, tasty-hunit + , tasty-quickcheck, tasty-smallcheck }: mkDerivation { pname = "tasty-discover"; - version = "4.2.4"; - sha256 = "1v6ndsvz9f04gv3m41a2yqprpa7xz8d00vkws25a9n7b7h3wvj4x"; + version = "4.2.2"; + sha256 = "1j95njl3ml7cfxnwv0i17ijca84fgyrjs2cfw4g5yh1m4x2zvg34"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base containers directory filepath Glob tasty + base containers directory filepath Glob ]; executableHaskellDepends = [ base containers directory filepath Glob ]; testHaskellDepends = [ - base bytestring containers directory filepath Glob hedgehog hspec - hspec-core tasty tasty-golden tasty-hedgehog tasty-hspec - tasty-hunit tasty-quickcheck tasty-smallcheck + base containers directory filepath Glob hedgehog tasty + tasty-hedgehog tasty-hspec tasty-hunit tasty-quickcheck + tasty-smallcheck ]; description = "Test discovery for the tasty framework"; license = lib.licenses.mit; @@ -280002,8 +279689,8 @@ self: { pname = "tasty-grading-system"; version = "0.1.0.0"; sha256 = "1r72gbylmv466naxkqsf56wlkp5kzhvyq0w3k7g47hs1rlslllmp"; - revision = "2"; - editedCabalFile = "1kr1113k6a0d8yd51lvl1689wdbq2lb2fp44rl6jzdaizxvj360f"; + revision = "4"; + editedCabalFile = "1h80pf2p13f33gl803xyg6znf1ychci9jqcl13xdxai1asb331hq"; libraryHaskellDepends = [ aeson base containers directory filepath generic-deriving mtl stm tagged tasty text @@ -280040,10 +279727,8 @@ self: { }: mkDerivation { pname = "tasty-hedgehog"; - version = "1.1.0.0"; - sha256 = "0cy49z8n124xh2ra2482vfy5if1n6d9lbdjma2zg1mxfj0k0zyfb"; - revision = "3"; - editedCabalFile = "1i7i2yws3bdmsg2hl7dh65zvh9sna3gnlv0l4m1sqqdx5dji1a3w"; + version = "1.3.1.0"; + sha256 = "1iq452mvd9wc9pfmjsmm848jwp3cvsk1faf2mlr21vcs0yaxvq3m"; libraryHaskellDepends = [ base hedgehog tagged tasty ]; testHaskellDepends = [ base hedgehog tasty tasty-expected-failure @@ -280292,6 +279977,8 @@ self: { ]; description = "JSON reporter for the tasty testing framework"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tasty-kat" = callPackage @@ -280563,7 +280250,6 @@ self: { doHaddock = false; description = "Tests defined by Search Using Golden Answer References"; license = lib.licenses.isc; - hydraPlatforms = lib.platforms.none; }) {}; "tasty-tap" = callPackage @@ -280750,7 +280436,6 @@ self: { description = "tcache using Amazon Web Services as default persistence mechanism"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tccli" = callPackage @@ -280902,6 +280587,7 @@ self: { description = "Test framework wrapper"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tdigest" = callPackage @@ -281125,6 +280811,7 @@ self: { ]; description = "Bleeding edge prelude"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "technique" = callPackage @@ -281206,6 +280893,7 @@ self: { description = "Telegram Bot API binding"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "telegram" = callPackage @@ -281279,31 +280967,6 @@ self: { }) {}; "telegram-bot-simple" = callPackage - ({ mkDerivation, aeson, aeson-pretty, base, bytestring, cron - , filepath, hashable, http-api-data, http-client, http-client-tls - , monad-control, mtl, pretty-show, profunctors, servant - , servant-client, servant-multipart-api, servant-multipart-client - , split, stm, template-haskell, text, time, transformers - , unordered-containers - }: - mkDerivation { - pname = "telegram-bot-simple"; - version = "0.4.5"; - sha256 = "0c2j0dmx6j15c8csmv64zc3m7qnbvnf5aqan7qjc8d5yfzbxr4nr"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson aeson-pretty base bytestring cron filepath hashable - http-api-data http-client http-client-tls monad-control mtl - pretty-show profunctors servant servant-client - servant-multipart-api servant-multipart-client split stm - template-haskell text time transformers unordered-containers - ]; - description = "Easy to use library for building Telegram bots"; - license = lib.licenses.bsd3; - }) {}; - - "telegram-bot-simple_0_6" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, bytestring, cron , filepath, hashable, http-api-data, http-client, http-client-tls , monad-control, mtl, pretty-show, profunctors, servant @@ -281327,7 +280990,6 @@ self: { ]; description = "Easy to use library for building Telegram bots"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "telegram-raw-api" = callPackage @@ -281757,7 +281419,6 @@ self: { description = "library to make electronic music, brings together temporal-music-notation and csound-expression packages"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "temporal-media" = callPackage @@ -282202,6 +281863,7 @@ self: { ]; description = "Encoder and decoder for the TensorFlow \"TFRecords\" format"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; }) {}; "tensorflow-records-conduit" = callPackage @@ -282218,6 +281880,7 @@ self: { ]; description = "Conduit wrappers for TensorFlow.Records."; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; }) {}; "tensorflow-test" = callPackage @@ -282265,35 +281928,17 @@ self: { testHaskellDepends = [ base containers HUnit QuickCheck ]; description = "Term Rewriting Library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "termbox" = callPackage - ({ mkDerivation, base }: - mkDerivation { - pname = "termbox"; - version = "0.3.0"; - sha256 = "1vi2ssylwvc6xqnhpnvc9q9c70glbf6s63rmyblc53g4qra2wkah"; - revision = "1"; - editedCabalFile = "1d0sv2ycizpy0fsn0v4n2bbziyr56y2md8qnqmr0bx1rkriz67li"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base ]; - description = "termbox bindings"; - license = lib.licenses.bsd3; - }) {}; - - "termbox_1_1_0" = callPackage ({ mkDerivation, base, termbox-bindings-hs }: mkDerivation { pname = "termbox"; - version = "1.1.0"; - sha256 = "0m2g3w0a0kc0a692r2mdflp1q96nycpwg80zf6lsb0z1xqvycypy"; + version = "1.1.0.1"; + sha256 = "0fwixvyf80gkj1l8r4v4vrmpilz0f02hqhpx0f93rbwaaadxqrd3"; libraryHaskellDepends = [ base termbox-bindings-hs ]; description = "termbox"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "termbox-banana" = callPackage @@ -282305,8 +281950,6 @@ self: { libraryHaskellDepends = [ base reactive-banana termbox ]; description = "termbox + reactive-banana"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "termbox-bindings" = callPackage @@ -282360,8 +282003,6 @@ self: { libraryHaskellDepends = [ base ki termbox ]; description = "termbox + The Elm Architecture"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "termcolor" = callPackage @@ -282507,47 +282148,6 @@ self: { }) {}; "termonad" = callPackage - ({ mkDerivation, adjunctions, aeson, base, Cabal, cabal-doctest - , classy-prelude, colour, constraints, containers, data-default - , directory, distributive, doctest, dyre, file-embed, filepath - , focuslist, genvalidity-containers, genvalidity-hspec, gi-gdk - , gi-gio, gi-glib, gi-gtk, gi-pango, gi-vte, gtk3, haskell-gi-base - , hedgehog, inline-c, lens, mono-traversable, pcre2, pretty-simple - , QuickCheck, tasty, tasty-hedgehog, tasty-hspec, template-haskell - , text, transformers, unordered-containers, vte_291, xml-conduit - , xml-html-qq, yaml - }: - mkDerivation { - pname = "termonad"; - version = "4.2.0.1"; - sha256 = "0qsjgx3742z21qg1cbw2mp8gaqvb2rnp4ds90s82vf9s1ps2dkqm"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - setupHaskellDepends = [ base Cabal cabal-doctest ]; - libraryHaskellDepends = [ - adjunctions aeson base classy-prelude colour constraints containers - data-default directory distributive dyre file-embed filepath - focuslist gi-gdk gi-gio gi-glib gi-gtk gi-pango gi-vte - haskell-gi-base inline-c lens mono-traversable pretty-simple - QuickCheck text transformers unordered-containers xml-conduit - xml-html-qq yaml - ]; - libraryPkgconfigDepends = [ gtk3 pcre2 vte_291 ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ - base doctest genvalidity-containers genvalidity-hspec hedgehog lens - QuickCheck tasty tasty-hedgehog tasty-hspec template-haskell - ]; - description = "Terminal emulator configurable in Haskell"; - license = lib.licenses.bsd3; - badPlatforms = lib.platforms.darwin; - mainProgram = "termonad"; - maintainers = [ lib.maintainers.cdepillabout ]; - }) {inherit (pkgs) gtk3; inherit (pkgs) pcre2; - vte_291 = pkgs.vte;}; - - "termonad_4_4_0_0" = callPackage ({ mkDerivation, adjunctions, aeson, base, Cabal, cabal-doctest , classy-prelude, colour, constraints, containers, data-default , directory, distributive, doctest, dyre, file-embed, filepath @@ -282583,7 +282183,6 @@ self: { description = "Terminal emulator configurable in Haskell"; license = lib.licenses.bsd3; badPlatforms = lib.platforms.darwin; - hydraPlatforms = lib.platforms.none; mainProgram = "termonad"; maintainers = [ lib.maintainers.cdepillabout ]; }) {inherit (pkgs) gtk3; inherit (pkgs) pcre2; @@ -283457,28 +283056,6 @@ self: { }) {}; "texmath" = callPackage - ({ mkDerivation, base, bytestring, containers, directory, filepath - , mtl, pandoc-types, parsec, process, split, syb, temporary, text - , utf8-string, xml - }: - mkDerivation { - pname = "texmath"; - version = "0.12.4"; - sha256 = "1k7hh75jzgysh7b7jkvy4w07dbkvm5fcc5hkkixz6xzrp2fvnws3"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base containers mtl pandoc-types parsec split syb text xml - ]; - testHaskellDepends = [ - base bytestring directory filepath process temporary text - utf8-string xml - ]; - description = "Conversion between math formats"; - license = lib.licenses.gpl2Only; - }) {}; - - "texmath_0_12_5_4" = callPackage ({ mkDerivation, base, bytestring, containers, directory, filepath , mtl, pandoc-types, parsec, pretty-show, split, syb, tagged, tasty , tasty-golden, text, xml @@ -283498,7 +283075,6 @@ self: { ]; description = "Conversion between math formats"; license = lib.licenses.gpl2Only; - hydraPlatforms = lib.platforms.none; }) {}; "texrunner" = callPackage @@ -283586,19 +283162,6 @@ self: { }) {}; "text-ansi" = callPackage - ({ mkDerivation, base, text }: - mkDerivation { - pname = "text-ansi"; - version = "0.1.1"; - sha256 = "1vcrsg7v8n6znh1pd9kbm20bc6dg3zijd3xjdjljadf15vfkd5f6"; - revision = "4"; - editedCabalFile = "0x7d9fgh2mvr0phb20s76k5wl6pl59r667jhkaqfbf88xz44j04k"; - libraryHaskellDepends = [ base text ]; - description = "Text styling for ANSI terminals"; - license = lib.licenses.bsd3; - }) {}; - - "text-ansi_0_2_1" = callPackage ({ mkDerivation, base, text, text-builder }: mkDerivation { pname = "text-ansi"; @@ -283607,7 +283170,6 @@ self: { libraryHaskellDepends = [ base text text-builder ]; description = "Text styling for ANSI terminals"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "text-ascii" = callPackage @@ -283641,27 +283203,6 @@ self: { }) {}; "text-builder" = callPackage - ({ mkDerivation, base-prelude, bytestring, criterion, QuickCheck - , quickcheck-instances, rerebase, tasty, tasty-hunit - , tasty-quickcheck, text, text-builder-dev - }: - mkDerivation { - pname = "text-builder"; - version = "0.6.6.5"; - sha256 = "145m3v5fpisz04dwd3pwnak8mvsnc60rw92br4q946kymfifb7kj"; - libraryHaskellDepends = [ - base-prelude bytestring text text-builder-dev - ]; - testHaskellDepends = [ - QuickCheck quickcheck-instances rerebase tasty tasty-hunit - tasty-quickcheck - ]; - benchmarkHaskellDepends = [ criterion rerebase ]; - description = "An efficient strict text builder"; - license = lib.licenses.mit; - }) {}; - - "text-builder_0_6_7" = callPackage ({ mkDerivation, base, bytestring, criterion, QuickCheck , quickcheck-instances, rerebase, tasty, tasty-hunit , tasty-quickcheck, text, text-builder-dev @@ -283678,33 +283219,9 @@ self: { benchmarkHaskellDepends = [ criterion rerebase ]; description = "An efficient strict text builder"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "text-builder-dev" = callPackage - ({ mkDerivation, base, bytestring, criterion, deferred-folds - , QuickCheck, quickcheck-instances, rerebase, split, tasty - , tasty-hunit, tasty-quickcheck, text, text-conversions, tostring - , transformers - }: - mkDerivation { - pname = "text-builder-dev"; - version = "0.2.1"; - sha256 = "0jrzs4dcm2zq5gsn4lbmrasrsk31rs0z6n3vgs514x7p3fdv6lpj"; - libraryHaskellDepends = [ - base bytestring deferred-folds split text text-conversions tostring - transformers - ]; - testHaskellDepends = [ - QuickCheck quickcheck-instances rerebase tasty tasty-hunit - tasty-quickcheck - ]; - benchmarkHaskellDepends = [ criterion rerebase ]; - description = "Edge of developments for \"text-builder\""; - license = lib.licenses.mit; - }) {}; - - "text-builder-dev_0_3_3" = callPackage ({ mkDerivation, base, bytestring, criterion, deferred-folds , isomorphism-class, QuickCheck, quickcheck-instances, rerebase , split, tasty, tasty-hunit, tasty-quickcheck, text, transformers @@ -283724,7 +283241,6 @@ self: { benchmarkHaskellDepends = [ criterion rerebase ]; description = "Edge of developments for \"text-builder\""; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "text-builder-linear" = callPackage @@ -283745,18 +283261,17 @@ self: { }) {}; "text-compression" = callPackage - ({ mkDerivation, base, bytestring, containers, massiv, mtl, text }: + ({ mkDerivation, base, bytestring, containers, mtl, parallel, text + }: mkDerivation { pname = "text-compression"; - version = "0.1.0.7"; - sha256 = "0sxzcdfx2v0870w130vkw6iyg5w0k8vvkz7fj3b50kr4wl9wypb4"; + version = "0.1.0.25"; + sha256 = "1lppagp2xkgn2hib71jp0p4jwl0ps415cnvjlhxfhfm0zp3pm6ys"; libraryHaskellDepends = [ - base bytestring containers massiv mtl text + base bytestring containers mtl parallel text ]; description = "A text compression library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "text-containers" = callPackage @@ -283840,10 +283355,10 @@ self: { }: mkDerivation { pname = "text-format"; - version = "0.3.2"; - sha256 = "1qxs8xyjk8nzzzam62lqqml9s0p08m749jri0lfaa844mnw3frij"; - revision = "2"; - editedCabalFile = "05findgw709h930wshaq514maxarjyjhsam6pkyzq83iz1yc2gra"; + version = "0.3.2.1"; + sha256 = "1q4ijzd8fsc4g2fi53448hhjg0wlgy9kdc1226kkqrnq1dg9nlm9"; + revision = "1"; + editedCabalFile = "15xiwzsfgwvhph9b2r8rkwpzfgymqqjm7d5jjjqzyxjqj73pdami"; libraryHaskellDepends = [ array base double-conversion ghc-prim integer-gmp old-locale text time transformers @@ -283910,28 +283425,6 @@ self: { }) {}; "text-icu" = callPackage - ({ mkDerivation, array, base, bytestring, deepseq, directory - , ghc-prim, HUnit, icu, QuickCheck, random, test-framework - , test-framework-hunit, test-framework-quickcheck2, text - }: - mkDerivation { - pname = "text-icu"; - version = "0.7.1.0"; - sha256 = "0s9gcd9lcrhk92ydhizyk0vbpf542ipc4hj60fa02b2g2x9q93ij"; - revision = "2"; - editedCabalFile = "0s0n9l682ffigfqbzb1adw63pj9iyvalv45kp9kxqwbj5yibblbc"; - libraryHaskellDepends = [ base bytestring deepseq text ]; - librarySystemDepends = [ icu ]; - testHaskellDepends = [ - array base bytestring deepseq directory ghc-prim HUnit QuickCheck - random test-framework test-framework-hunit - test-framework-quickcheck2 text - ]; - description = "Bindings to the ICU library"; - license = lib.licenses.bsd3; - }) {inherit (pkgs) icu;}; - - "text-icu_0_8_0_2" = callPackage ({ mkDerivation, array, base, bytestring, deepseq, directory , ghc-prim, HUnit, icu, icu-i18n, QuickCheck, random , test-framework, test-framework-hunit, test-framework-quickcheck2 @@ -283951,7 +283444,6 @@ self: { ]; description = "Bindings to the ICU library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) icu; icu-i18n = null;}; "text-icu-normalized" = callPackage @@ -283995,6 +283487,8 @@ self: { ]; description = "ICU transliteration"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) icu;}; "text-json-qq" = callPackage @@ -284078,8 +283572,6 @@ self: { ]; description = "Monadic parsing combinator library with attention to locations"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "text-loc" = callPackage @@ -284265,8 +283757,8 @@ self: { }: mkDerivation { pname = "text-regex-replace"; - version = "0.1.1.4"; - sha256 = "19n7zwnrm4da8ifhwlqwrx969pni0njj5f69j30gp71fi9ihjgsb"; + version = "0.1.1.5"; + sha256 = "0jb45mn1szjdg2m46ig2mgd1yfvywpr566zwf0rmw60bmc4zdnhl"; libraryHaskellDepends = [ attoparsec base text text-icu ]; testHaskellDepends = [ base hspec QuickCheck smallcheck text text-icu @@ -284291,8 +283783,6 @@ self: { testHaskellDepends = [ base base-unicode-symbols hspec lens text ]; description = "Marking text regions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "text-register-machine" = callPackage @@ -284340,22 +283830,6 @@ self: { }) {}; "text-rope" = callPackage - ({ mkDerivation, base, deepseq, random, tasty, tasty-bench - , tasty-quickcheck, text, vector - }: - mkDerivation { - pname = "text-rope"; - version = "0.1"; - sha256 = "0dfn8hjnw38zh9nw7wy2jfyg0acg9jpfhngj65aczb9qxv6yj3hv"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ base deepseq text vector ]; - testHaskellDepends = [ base tasty tasty-quickcheck text ]; - benchmarkHaskellDepends = [ base random tasty-bench text ]; - description = "Text lines and ropes"; - license = lib.licenses.bsd3; - }) {}; - - "text-rope_0_2" = callPackage ({ mkDerivation, base, deepseq, random, tasty, tasty-bench , tasty-quickcheck, text, vector }: @@ -284369,7 +283843,6 @@ self: { benchmarkHaskellDepends = [ base random tasty-bench text ]; description = "Text lines and ropes"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "text-short" = callPackage @@ -284396,38 +283869,6 @@ self: { }) {}; "text-show" = callPackage - ({ mkDerivation, array, base, base-compat-batteries, base-orphans - , bifunctors, bytestring, bytestring-builder, containers, criterion - , deepseq, deriving-compat, generic-deriving, ghc-boot-th, ghc-prim - , hspec, hspec-discover, QuickCheck, quickcheck-instances - , template-haskell, text, th-abstraction, th-lift, transformers - , transformers-compat - }: - mkDerivation { - pname = "text-show"; - version = "3.9.7"; - sha256 = "1zc47qh38jmg19fdki9isjcq4v115w2q61dnmxkypahhgiaqgkb3"; - revision = "1"; - editedCabalFile = "0dm0ziv02wcwlgzp58kfa4i05xbq9v82ay6kjnzrf0n3z3pdpxbm"; - libraryHaskellDepends = [ - array base base-compat-batteries bifunctors bytestring - bytestring-builder containers generic-deriving ghc-boot-th ghc-prim - template-haskell text th-abstraction th-lift transformers - transformers-compat - ]; - testHaskellDepends = [ - array base base-compat-batteries base-orphans bytestring - bytestring-builder deriving-compat generic-deriving ghc-prim hspec - QuickCheck quickcheck-instances template-haskell text transformers - transformers-compat - ]; - testToolDepends = [ hspec-discover ]; - benchmarkHaskellDepends = [ base criterion deepseq ghc-prim text ]; - description = "Efficient conversion of values into Text"; - license = lib.licenses.bsd3; - }) {}; - - "text-show_3_10" = callPackage ({ mkDerivation, array, base, base-compat-batteries, base-orphans , bifunctors, bytestring, bytestring-builder, containers, criterion , deepseq, deriving-compat, generic-deriving, ghc-boot-th, ghc-prim @@ -284455,45 +283896,9 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq ghc-prim text ]; description = "Efficient conversion of values into Text"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "text-show-instances" = callPackage - ({ mkDerivation, base, base-compat-batteries, bifunctors, binary - , containers, directory, generic-deriving, ghc-boot-th, ghc-prim - , haskeline, hpc, hspec, hspec-discover, old-locale, old-time - , pretty, QuickCheck, quickcheck-instances, random, scientific - , semigroups, tagged, template-haskell, terminfo, text, text-short - , text-show, th-orphans, time, transformers, transformers-compat - , unix, unordered-containers, vector, xhtml - }: - mkDerivation { - pname = "text-show-instances"; - version = "3.8.6"; - sha256 = "1jg1wsjnp6q68nsynwzw26s4akr0d9a4frd9dvnddalm2c6vdwaz"; - revision = "1"; - editedCabalFile = "1xikz6yviivafckm6ri0abm60z2qkgmqkc7gnjxhicfhbnnqpbbi"; - libraryHaskellDepends = [ - base base-compat-batteries bifunctors binary containers directory - ghc-boot-th haskeline hpc old-locale old-time pretty random - scientific semigroups tagged template-haskell terminfo text - text-short text-show time transformers transformers-compat unix - unordered-containers vector xhtml - ]; - testHaskellDepends = [ - base base-compat-batteries bifunctors binary containers directory - generic-deriving ghc-boot-th ghc-prim haskeline hpc hspec - old-locale old-time pretty QuickCheck quickcheck-instances random - scientific tagged template-haskell terminfo text-short text-show - th-orphans time transformers transformers-compat unix - unordered-containers vector xhtml - ]; - testToolDepends = [ hspec-discover ]; - description = "Additional instances for text-show"; - license = lib.licenses.bsd3; - }) {}; - - "text-show-instances_3_9_2" = callPackage ({ mkDerivation, base, base-compat-batteries, bifunctors, binary , containers, directory, generic-deriving, ghc-boot-th, ghc-prim , haskeline, hpc, hspec, hspec-discover, old-locale, old-time @@ -284524,7 +283929,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Additional instances for text-show"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "text-stream-decode" = callPackage @@ -284595,6 +283999,8 @@ self: { ]; description = "UTF-7 encoding/decoding for Data.Text"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "text-utf8" = callPackage @@ -284666,19 +284072,6 @@ self: { }) {}; "text-zipper" = callPackage - ({ mkDerivation, base, deepseq, hspec, QuickCheck, text, vector }: - mkDerivation { - pname = "text-zipper"; - version = "0.11"; - sha256 = "07l1pyx93gv95cn1wh1di129axhm9sqsn4znykliacv60ld854ys"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ base deepseq text vector ]; - testHaskellDepends = [ base hspec QuickCheck text ]; - description = "A text editor zipper library"; - license = lib.licenses.bsd3; - }) {}; - - "text-zipper_0_12" = callPackage ({ mkDerivation, base, deepseq, hspec, QuickCheck, text, vector }: mkDerivation { pname = "text-zipper"; @@ -284689,7 +284082,6 @@ self: { testHaskellDepends = [ base hspec QuickCheck text ]; description = "A text editor zipper library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "text-zipper-monad" = callPackage @@ -285032,10 +284424,8 @@ self: { }: mkDerivation { pname = "th-desugar"; - version = "1.12"; - sha256 = "1bp47jpif299kbm27zhjaw1nhl12daa09vsc8f0jracq0jhxi3iv"; - revision = "1"; - editedCabalFile = "1dh5j70f5gxfj6kyw7zc9hxv21ilpj408r9chixngxf82b30ic69"; + version = "1.13.1"; + sha256 = "03k2kfbzfc87kibzbpp3s1l5xb0ww2vvwj9ngh0qapxm28a01rz3"; libraryHaskellDepends = [ base containers ghc-prim mtl ordered-containers syb template-haskell th-abstraction th-lift th-orphans @@ -285261,8 +284651,8 @@ self: { }: mkDerivation { pname = "th-lego"; - version = "0.3.0.1"; - sha256 = "092q1mg38lkam0bcw4i1m14563j8z9l9hcqjp0sfsclkylamh23c"; + version = "0.3.0.2"; + sha256 = "1w7z6g0sfn23yaqjpylnf1kpwyyf9ka17f0bqvlxcd3b739ajg8z"; libraryHaskellDepends = [ base template-haskell template-haskell-compat-v0208 text ]; @@ -285451,8 +284841,8 @@ self: { }: mkDerivation { pname = "th-test-utils"; - version = "1.1.1"; - sha256 = "03qpszfhb58nmm673zhbkvsmw1ynjr2h19qpggyay2fk5zgq7n3q"; + version = "1.2.1"; + sha256 = "1vk5fj66w7smq4yc614ixh7s78n3djggpzcxmakyxfz01vz20gay"; libraryHaskellDepends = [ base template-haskell th-orphans transformers ]; @@ -285464,26 +284854,6 @@ self: { license = lib.licenses.bsd3; }) {}; - "th-test-utils_1_2_0" = callPackage - ({ mkDerivation, base, bytestring, tasty, tasty-golden, tasty-hunit - , template-haskell, th-orphans, transformers - }: - mkDerivation { - pname = "th-test-utils"; - version = "1.2.0"; - sha256 = "0p5j5mgjqwvkw0rcxlfkcflyqdz972ls70lprn38yjb32v3l8ncf"; - libraryHaskellDepends = [ - base template-haskell th-orphans transformers - ]; - testHaskellDepends = [ - base bytestring tasty tasty-golden tasty-hunit template-haskell - th-orphans transformers - ]; - description = "Utility functions for testing Template Haskell code"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - }) {}; - "th-to-exp" = callPackage ({ mkDerivation, base, hspec, template-haskell }: mkDerivation { @@ -285620,7 +284990,6 @@ self: { ]; description = "Minimalistic actor library"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "themoviedb" = callPackage @@ -285929,8 +285298,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "A simplified implementation of Erlang/OTP like supervisor over thread"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "thread-utils-context" = callPackage @@ -285998,6 +285365,7 @@ self: { ]; description = "Manage concurrently operating threads without having to spark them"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "threadmanager" = callPackage @@ -286096,7 +285464,9 @@ self: { ]; description = "A graphical tool for profiling parallel Haskell programs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "threadscope"; + broken = true; }) {}; "threefish" = callPackage @@ -286144,10 +285514,8 @@ self: { }: mkDerivation { pname = "threepenny-gui"; - version = "0.9.1.0"; - sha256 = "00sjkfa9qfnnwqfdw68yb8hq6nm1y5qv9896rzn5aachr7mlfpx2"; - revision = "7"; - editedCabalFile = "0lf7w1kxnd0wwqwrq2svbki1cbzwl9ggvfl1bvxvhg1qrw0avqbd"; + version = "0.9.4.0"; + sha256 = "08jqa01pp6b300ic0xcn687i0a0kvz76bgym3dchk9n75m6hvc4f"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -286192,7 +285560,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "threepenny-flexbox-exe"; - broken = true; }) {}; "thrift" = callPackage @@ -286327,6 +285694,8 @@ self: { libraryHaskellDepends = [ base bytestring gd ]; description = "generate thumbnail image"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "thumbnail-plus" = callPackage @@ -286399,8 +285768,6 @@ self: { ]; description = "A faster time library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tianbar" = callPackage @@ -286511,7 +285878,9 @@ self: { testHaskellDepends = [ base QuickCheck text ]; description = "A basic implementation of a personal ticket management system"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "ticket-manager"; + broken = true; }) {}; "tickle" = callPackage @@ -286549,34 +285918,6 @@ self: { }) {}; "tidal" = callPackage - ({ mkDerivation, async, base, bifunctors, bytestring, clock, colour - , containers, criterion, deepseq, exceptions, hint, hosc, microspec - , mtl, network, parsec, primitive, random, text, transformers - , weigh - }: - mkDerivation { - pname = "tidal"; - version = "1.7.10"; - sha256 = "0vfymixr66sj6zsadkbcx0yx722f2d3q6cic4c91cswxssfqfrhc"; - isLibrary = true; - isExecutable = true; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ - base bifunctors bytestring clock colour containers deepseq - exceptions hosc mtl network parsec primitive random text - transformers - ]; - executableHaskellDepends = [ async base exceptions hint ]; - testHaskellDepends = [ - base containers deepseq hosc microspec parsec - ]; - benchmarkHaskellDepends = [ base criterion weigh ]; - description = "Pattern language for improvised music"; - license = lib.licenses.gpl3Only; - mainProgram = "tidal"; - }) {}; - - "tidal_1_9_2" = callPackage ({ mkDerivation, base, bytestring, clock, colour, containers , criterion, deepseq, exceptions, hosc, microspec, mtl, network , parsec, primitive, random, text, tidal-link, transformers, weigh @@ -286596,6 +285937,28 @@ self: { benchmarkHaskellDepends = [ base criterion weigh ]; description = "Pattern language for improvised music"; license = lib.licenses.gpl3Only; + }) {}; + + "tidal_1_9_3" = callPackage + ({ mkDerivation, base, bytestring, clock, colour, containers + , criterion, deepseq, exceptions, hosc, microspec, mtl, network + , parsec, primitive, random, text, tidal-link, transformers, weigh + }: + mkDerivation { + pname = "tidal"; + version = "1.9.3"; + sha256 = "1p3k65rgxjv701nk30jqf614bk1zmblyq0vlishzza2cdld5rhbc"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + base bytestring clock colour containers deepseq exceptions hosc mtl + network parsec primitive random text tidal-link transformers + ]; + testHaskellDepends = [ + base containers deepseq hosc microspec parsec + ]; + benchmarkHaskellDepends = [ base criterion weigh ]; + description = "Pattern language for improvised music"; + license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; }) {}; @@ -286645,6 +286008,7 @@ self: { description = "Serial support for tidal"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tidal-vis" = callPackage @@ -286712,7 +286076,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "tiger"; - broken = true; }) {}; "tight-apply" = callPackage @@ -286781,7 +286144,9 @@ self: { ]; description = "A program for generating LaTeX code of string diagrams"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "tikzsd"; + broken = true; }) {}; "tile" = callPackage @@ -286892,6 +286257,7 @@ self: { libraryHaskellDepends = [ base time ]; description = "A library for time domains and durations"; license = lib.licenses.mit; + maintainers = [ lib.maintainers.turion ]; }) {}; "time-extras" = callPackage @@ -287467,7 +286833,9 @@ self: { ]; description = "A tool for visualizing time series from log files"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "tplot"; + broken = true; }) {}; "timeprint" = callPackage @@ -287483,20 +286851,6 @@ self: { }) {}; "timer-wheel" = callPackage - ({ mkDerivation, atomic-primops, base, psqueues, vector }: - mkDerivation { - pname = "timer-wheel"; - version = "0.3.0"; - sha256 = "16v663mcsj0h17x4jriq50dps3m3f8wqcsm19kl48vrs7f4mp07s"; - revision = "3"; - editedCabalFile = "1lgavl752g968ki042dxha8d28dm8zfs8mzm5zl8xk4p0wi1iwdv"; - libraryHaskellDepends = [ atomic-primops base psqueues vector ]; - testHaskellDepends = [ base ]; - description = "A timer wheel"; - license = lib.licenses.bsd3; - }) {}; - - "timer-wheel_0_4_0_1" = callPackage ({ mkDerivation, array, atomic-primops, base, ki, psqueues }: mkDerivation { pname = "timer-wheel"; @@ -287506,30 +286860,9 @@ self: { testHaskellDepends = [ base ]; description = "A timer wheel"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "timerep" = callPackage - ({ mkDerivation, attoparsec, base, monoid-subclasses, QuickCheck - , tasty, tasty-hunit, tasty-quickcheck, text, time - }: - mkDerivation { - pname = "timerep"; - version = "2.0.1.0"; - sha256 = "1l67gbfjydq0xapry5k9pwzxmp6z7ixzyvwshnszryspcckagxif"; - revision = "1"; - editedCabalFile = "1sk6bd6d0qvfbhn8b8na2m2z784gcbmxmgm1i6xcfbb8bls7bx7q"; - libraryHaskellDepends = [ - attoparsec base monoid-subclasses text time - ]; - testHaskellDepends = [ - base QuickCheck tasty tasty-hunit tasty-quickcheck text time - ]; - description = "Parse and display time according to some RFCs (RFC3339, RFC2822, RFC822)"; - license = lib.licenses.bsd3; - }) {}; - - "timerep_2_1_0_0" = callPackage ({ mkDerivation, attoparsec, base, monoid-subclasses, QuickCheck , tasty, tasty-hunit, tasty-quickcheck, text, time }: @@ -287545,7 +286878,6 @@ self: { ]; description = "Parse and display time according to some RFCs (RFC3339, RFC2822, RFC822)"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "timers" = callPackage @@ -287567,10 +286899,8 @@ self: { ({ mkDerivation, base, hspec, QuickCheck }: mkDerivation { pname = "timers-tick"; - version = "0.5.0.1"; - sha256 = "1kv646l77bzjgs2v39axsi405zvapwks1vj4ff341r5agpwrfqlc"; - revision = "1"; - editedCabalFile = "1qsmzkm0k14z06czpbjgkbzb1liws3iass0rwsi5wp5i62jkhczs"; + version = "0.5.0.2"; + sha256 = "0jhzv5h5jwjgcskimfrvaiv5544czkyngxw9bsjdmxk0y1v698vr"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base hspec QuickCheck ]; description = "tick based timers"; @@ -287850,7 +287180,6 @@ self: { license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; mainProgram = "tintin"; - broken = true; }) {}; "tiny-scheduler" = callPackage @@ -287880,6 +287209,7 @@ self: { description = "TinyMesh - communicating with auto-meshing sensor network"; license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tinyXml" = callPackage @@ -287949,6 +287279,8 @@ self: { benchmarkHaskellDepends = [ base bytestring criterion ]; description = "Simplistic logging using fast-logger"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tinytemplate" = callPackage @@ -288424,31 +287756,6 @@ self: { }) {}; "tlynx" = callPackage - ({ mkDerivation, aeson, async, attoparsec, base, bytestring - , comonad, containers, data-default-class, elynx-tools, elynx-tree - , mwc-random, optparse-applicative, parallel, primitive, statistics - , text, transformers, vector - }: - mkDerivation { - pname = "tlynx"; - version = "0.6.1.1"; - sha256 = "1q59gfk9i4ghm5gyw104isn0f3ws73n12a9hv6xhs6c3rfl8spr9"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson async attoparsec base bytestring comonad containers - data-default-class elynx-tools elynx-tree mwc-random - optparse-applicative parallel primitive statistics text - transformers vector - ]; - executableHaskellDepends = [ base ]; - description = "Handle phylogenetic trees"; - license = lib.licenses.gpl3Plus; - mainProgram = "tlynx"; - maintainers = [ lib.maintainers.dschrempf ]; - }) {}; - - "tlynx_0_7_0_1" = callPackage ({ mkDerivation, aeson, async, attoparsec, base, bytestring , comonad, containers, data-default-class, elynx-tools, elynx-tree , optparse-applicative, parallel, random, statistics, text @@ -288468,7 +287775,6 @@ self: { executableHaskellDepends = [ base ]; description = "Handle phylogenetic trees"; license = lib.licenses.gpl3Plus; - hydraPlatforms = lib.platforms.none; mainProgram = "tlynx"; maintainers = [ lib.maintainers.dschrempf ]; }) {}; @@ -288550,8 +287856,8 @@ self: { }: mkDerivation { pname = "tmp-proc"; - version = "0.5.1.2"; - sha256 = "0fisalws4qz4y3dagmra4mxns6b5ljf3szf907kdf34v4lysf8j0"; + version = "0.5.1.3"; + sha256 = "050inff8y97bzf4ajnqrxgcblj0cq0khcp1y35vwbwgm3al2l21p"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -288599,8 +287905,8 @@ self: { }: mkDerivation { pname = "tmp-proc-postgres"; - version = "0.5.2.1"; - sha256 = "0vd8ag23brrbcgfsjpi5cg0fm5crlww8mmg2cpiyqhih370qivxr"; + version = "0.5.2.2"; + sha256 = "1h8c5rv4i85z173mx2d2bw2ipzwjs04lrlc45249l26f6p4nlr9p"; libraryHaskellDepends = [ base bytestring postgresql-simple text tmp-proc ]; @@ -288610,8 +287916,6 @@ self: { ]; description = "Shows how to run a PostgreSQL database as a tmp proc"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tmp-proc-rabbitmq" = callPackage @@ -288628,8 +287932,6 @@ self: { ]; description = "Shows how to run RabbitMQ as a tmp proc"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tmp-proc-redis" = callPackage @@ -288646,8 +287948,6 @@ self: { ]; description = "Shows how to run redis as a tmp proc"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tmp-proc-zipkin" = callPackage @@ -288666,8 +287966,6 @@ self: { ]; description = "Shows how to run redis as a tmp proc"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tmpl" = callPackage @@ -288807,13 +288105,11 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "todo"; - version = "0.2.0.2"; - sha256 = "1gh2jdrxph0x9cc03kk8xxjyicivwcqfs9qv2nfr7mn570cmjrmw"; + version = "0.2.0.3"; + sha256 = "1ilnslggrca8arjibgn44xh8m36ywwcbqi5h538h7cp669lnyxz9"; libraryHaskellDepends = [ base ]; - description = "A todo bottom"; + description = "A replacement for undefined that gives warnings"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "todos" = callPackage @@ -289133,8 +288429,6 @@ self: { libraryHaskellDepends = [ base OpenAL stm vector ]; description = "Easy to use library for audio programming"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "toml" = callPackage @@ -289172,19 +288466,18 @@ self: { }) {}; "toml-reader" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, deepseq - , directory, megaparsec, parser-combinators, process, tasty - , tasty-golden, tasty-hunit, text, time, unordered-containers - , vector + ({ mkDerivation, aeson, base, bytestring, containers, directory + , megaparsec, parser-combinators, process, tasty, tasty-golden + , tasty-hunit, text, time, unordered-containers, vector }: mkDerivation { pname = "toml-reader"; - version = "0.1.0.0"; - sha256 = "06gxp8pzh8cdrifg5n0mhlnrslrx7k235sz2ldpy60x7vz7qywv9"; - revision = "2"; - editedCabalFile = "0ga0nc2n3irk0iy7ih90vww1cyaydn5sz7bpk7bz21ncny3g9fyg"; + version = "0.2.0.0"; + sha256 = "0pajlx405cbb7c5bcq3r8hgqlmn16nqvraskplq9n9cc5xhw04xk"; + revision = "1"; + editedCabalFile = "0v03ssaa4kqa0i3wvl460028qhvlzfsqrqk6vbgcvsw6vxsnbh80"; libraryHaskellDepends = [ - base containers deepseq megaparsec parser-combinators text time + base containers megaparsec parser-combinators text time ]; testHaskellDepends = [ aeson base bytestring containers directory process tasty @@ -289213,8 +288506,6 @@ self: { ]; description = "Alternative parser for TOML values produced by the toml-reader package"; license = lib.licenses.asl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "tomland" = callPackage @@ -289584,6 +288875,7 @@ self: { license = "GPL"; hydraPlatforms = lib.platforms.none; mainProgram = "topkata"; + broken = true; }) {}; "topograph" = callPackage @@ -289704,6 +288996,8 @@ self: { ]; description = "Dense and sparse total maps"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "touched" = callPackage @@ -290429,6 +289723,8 @@ self: { pname = "transformers"; version = "0.6.0.4"; sha256 = "1jw9c89yri37hsai6jgckfdana1gqjr15xnanxzm3vahvgcb5f1s"; + revision = "1"; + editedCabalFile = "0j369jl6y2p3gyhhxyr24x7dbdgvlgnnfxjb63f9gkb9b11rbq3q"; libraryHaskellDepends = [ base ]; description = "Concrete functor and monad transformers"; license = lib.licenses.bsd3; @@ -290477,20 +289773,11 @@ self: { libraryHaskellDepends = [ base mmorph transformers ]; description = "Bifunctors over monad transformers"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "transformers-compat" = callPackage - ({ mkDerivation, base, ghc-prim, transformers }: - mkDerivation { - pname = "transformers-compat"; - version = "0.6.6"; - sha256 = "1yd936az31g9995frc84g05rrb5b7w59ajssc5183lp6wm8h4bky"; - libraryHaskellDepends = [ base ghc-prim transformers ]; - description = "A small compatibility shim for the transformers library"; - license = lib.licenses.bsd3; - }) {}; - - "transformers-compat_0_7_2" = callPackage ({ mkDerivation, base, ghc-prim, transformers }: mkDerivation { pname = "transformers-compat"; @@ -290499,7 +289786,6 @@ self: { libraryHaskellDepends = [ base ghc-prim transformers ]; description = "A small compatibility shim for the transformers library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "transformers-compose" = callPackage @@ -291118,6 +290404,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Non-Determinism Monad for Tree Search"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tree-render-text" = callPackage @@ -291659,6 +290947,7 @@ self: { description = "Various trie implementations in Haskell"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "trifecta" = callPackage @@ -291889,7 +291178,6 @@ self: { executableHaskellDepends = [ base containers parseargs WAVE ]; description = "Audio file compressor-limiter"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "truelevel"; }) {}; @@ -291931,8 +291219,6 @@ self: { testHaskellDepends = [ base binary containers cropty merge text ]; description = "An implementation of a trust chain"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "truthful" = callPackage @@ -292225,22 +291511,6 @@ self: { }) {}; "ttc" = callPackage - ({ mkDerivation, base, bytestring, tasty, tasty-hunit - , template-haskell, text - }: - mkDerivation { - pname = "ttc"; - version = "1.1.1.1"; - sha256 = "1zk4iavn51s89m35w7fwi7z9c5gkz98f8phv5bp4f9ajirmhn6r1"; - libraryHaskellDepends = [ base bytestring template-haskell text ]; - testHaskellDepends = [ - base bytestring tasty tasty-hunit template-haskell text - ]; - description = "Textual Type Classes"; - license = lib.licenses.mit; - }) {}; - - "ttc_1_2_0_0" = callPackage ({ mkDerivation, base, bytestring, tasty, tasty-hunit , template-haskell, text }: @@ -292256,7 +291526,6 @@ self: { ]; description = "Textual Type Classes"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "ttl-hashtables" = callPackage @@ -292279,6 +291548,8 @@ self: { ]; description = "Extends hashtables so that entries added can be expired after a TTL"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "ttn" = callPackage @@ -292455,12 +291726,14 @@ self: { ({ mkDerivation, base, ghc-prim, hspec, template-haskell }: mkDerivation { pname = "tuple-append"; - version = "0.1.2.0"; - sha256 = "0fiq5v8y5plzw1rmsv7hh951fnz45r714p38nrql940pp7qyh9rj"; + version = "0.2.0.0"; + sha256 = "18516636w3bgwvymdbzw1971fhja7lrpwx78nz5n67qq23il7rrq"; libraryHaskellDepends = [ base ghc-prim template-haskell ]; testHaskellDepends = [ base ghc-prim hspec ]; description = "A package to append items and tuples into new tuples"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "tuple-append-instances" = callPackage @@ -292476,6 +291749,7 @@ self: { ]; description = "Extra instances for the typeclasses in the tuple-append package"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "tuple-gen" = callPackage @@ -292674,7 +291948,6 @@ self: { description = "An implementation of Turing Machine and Automaton"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "turkish-deasciifier" = callPackage @@ -293099,6 +292372,7 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "twhs"; + broken = true; }) {}; "twidge" = callPackage @@ -293284,8 +292558,8 @@ self: { }: mkDerivation { pname = "twitchapi"; - version = "0.0.3"; - sha256 = "1wbkix4cmkzgg5mz6d721107nra00dr00nhigq55wkzhnpf39lbz"; + version = "0.0.4"; + sha256 = "0mbsajf5sz305ym0j3wlilvw74qpd3rn0pr9l9cvwb8lvbwvbyb8"; libraryHaskellDepends = [ aeson base bytestring hoauth2 http-client text time timerep uri-bytestring @@ -293348,7 +292622,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Twitter API package with conduit interface and Streaming API support"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "twitter-enumerator" = callPackage @@ -293412,8 +292685,6 @@ self: { ]; description = "Twitter JSON parser and types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "twitter-types-lens" = callPackage @@ -293429,7 +292700,6 @@ self: { ]; description = "Twitter JSON types (lens powered)"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "tx" = callPackage @@ -293739,10 +293009,8 @@ self: { }: mkDerivation { pname = "type-errors"; - version = "0.2.0.0"; - sha256 = "1d1fi4ij18q39rpibc056mgvly75zqixkba4l8bn307c62f50k8p"; - revision = "3"; - editedCabalFile = "0ig8qd2g8rd5n78039xhbq7n8r514f8kvbh0mgajav2a5lp549s1"; + version = "0.2.0.1"; + sha256 = "0ds1y5gjjgd2g3dsn8bfcviy6zv8nvmyaifysmb7ckggdfg3cdym"; libraryHaskellDepends = [ base first-class-families syb template-haskell th-abstraction ]; @@ -293764,6 +293032,8 @@ self: { testHaskellDepends = [ base doctest Glob ]; description = "Combinators for writing pretty type errors easily"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "type-fun" = callPackage @@ -293904,18 +293174,6 @@ self: { }) {}; "type-level-kv-list" = callPackage - ({ mkDerivation, base, doctest, Glob }: - mkDerivation { - pname = "type-level-kv-list"; - version = "1.1.0"; - sha256 = "0wvxgxp7rlqbf2crcpb9pbzl3k47i7pc16ih4zfwgv88j7jk5w2g"; - libraryHaskellDepends = [ base ]; - testHaskellDepends = [ base doctest Glob ]; - description = "A module for hash map like object with type level keys"; - license = lib.licenses.mit; - }) {}; - - "type-level-kv-list_2_0_0" = callPackage ({ mkDerivation, base, doctest, Glob }: mkDerivation { pname = "type-level-kv-list"; @@ -293925,7 +293183,6 @@ self: { testHaskellDepends = [ base doctest Glob ]; description = "Type level Key-Value list"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "type-level-kv-list-esqueleto" = callPackage @@ -293937,8 +293194,19 @@ self: { libraryHaskellDepends = [ base esqueleto text type-level-kv-list ]; description = "Make Esqueleto handy with type-level-kv-list"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; + }) {}; + + "type-level-kv-list-persistent" = callPackage + ({ mkDerivation, base, persistent, text, type-level-kv-list }: + mkDerivation { + pname = "type-level-kv-list-persistent"; + version = "0.2.0.0"; + sha256 = "1n9niak3d4vnrpfsr7ydnbphlgviqwwzrnjg84grjx0rfm2ffxy2"; + libraryHaskellDepends = [ + base persistent text type-level-kv-list + ]; + description = "Make Persistent Raw SQL handy with type-level-kv-list"; + license = lib.licenses.mit; }) {}; "type-level-natural-number" = callPackage @@ -294003,6 +293271,8 @@ self: { libraryHaskellDepends = [ base ghc-prim ]; description = "Type-level sets and finite maps (with value-level counterparts)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "type-level-tf" = callPackage @@ -294071,6 +293341,33 @@ self: { license = lib.licenses.bsd3; }) {}; + "type-natural_1_2_0_1" = callPackage + ({ mkDerivation, base, constraints, equational-reasoning, ghc + , ghc-typelits-knownnat, ghc-typelits-natnormalise + , ghc-typelits-presburger, integer-logarithms, QuickCheck + , quickcheck-instances, tasty, tasty-discover, tasty-hunit + , tasty-quickcheck, template-haskell + }: + mkDerivation { + pname = "type-natural"; + version = "1.2.0.1"; + sha256 = "0ygv8s36k4f11fr0wrz7wryj5b3a3j8pxzbz1h4r1w4ij15krd8x"; + libraryHaskellDepends = [ + base constraints equational-reasoning ghc ghc-typelits-knownnat + ghc-typelits-natnormalise ghc-typelits-presburger + integer-logarithms template-haskell + ]; + testHaskellDepends = [ + base equational-reasoning integer-logarithms QuickCheck + quickcheck-instances tasty tasty-discover tasty-hunit + tasty-quickcheck template-haskell + ]; + testToolDepends = [ tasty-discover ]; + description = "Type-level natural and proofs of their properties"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "type-of-html" = callPackage ({ mkDerivation, base, blaze-html, bytestring, containers , criterion, deepseq, double-conversion, ghc, ghc-paths, ghc-prim @@ -294171,8 +293468,6 @@ self: { testHaskellDepends = [ base tasty tasty-hunit ]; description = "Support functions to work with type representations"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "type-rig" = callPackage @@ -294184,8 +293479,6 @@ self: { libraryHaskellDepends = [ base invariant ]; description = "Classes for the rig (sums and products) of types"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "type-safe-avl" = callPackage @@ -294199,6 +293492,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Type safe BST and AVL trees"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "type-sets" = callPackage @@ -294364,8 +293659,6 @@ self: { ]; description = "Mock functions and expressions anywhere"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "typeable-th" = callPackage @@ -294395,8 +293688,22 @@ self: { testHaskellDepends = [ base containers ghc ghc-tcplugins-extra ]; description = "Simple type check plugin which calculate addition, subtraction and less-or-equal-than"; license = lib.licenses.bsd3; + }) {}; + + "typecheck-plugin-nat-simple_0_1_0_9" = callPackage + ({ mkDerivation, base, containers, ghc, ghc-tcplugins-extra }: + mkDerivation { + pname = "typecheck-plugin-nat-simple"; + version = "0.1.0.9"; + sha256 = "0ada389g1zmprwj2injmx49dcj8z6n1vxbbii4c6327mvw39ay0w"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + base containers ghc ghc-tcplugins-extra + ]; + testHaskellDepends = [ base containers ghc ghc-tcplugins-extra ]; + description = "Simple type check plugin which calculate addition, subtraction and less-or-equal-than"; + license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "typed-admin" = callPackage @@ -294541,6 +293848,7 @@ self: { executableHaskellDepends = [ base diagrams-lib text ]; description = "Typed and composable spreadsheets"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.Gabriel439 ]; }) {}; @@ -294652,7 +293960,6 @@ self: { description = "Typed frontend to TensorFlow and higher-order deep learning"; license = lib.licenses.lgpl3Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "typedquery" = callPackage @@ -294732,6 +294039,7 @@ self: { description = "Solve type equalities using custom type-level rewrite rules"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "typelevel-tensor" = callPackage @@ -294775,6 +294083,8 @@ self: { libraryHaskellDepends = [ base dependent-sum ]; description = "Existential witnesses, singletons, and classes for operations on GHC TypeLits"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "typenums" = callPackage @@ -294879,8 +294189,8 @@ self: { }: mkDerivation { pname = "typesafe-precure"; - version = "0.9.0.1"; - sha256 = "10965lqb2f2fk5zyzdvk72bc9ja9kl17fqpb9b96pazw74qjm7a5"; + version = "0.9.1.1"; + sha256 = "0g04zr6nd7fsbj6xjvr151kbq2j1hmm9fdnj4mlh26s0gacbpv7w"; libraryHaskellDepends = [ aeson aeson-pretty autoexporter base bytestring dlist monad-skeleton template-haskell text th-data-compat @@ -295114,8 +294424,8 @@ self: { }: mkDerivation { pname = "tzdata"; - version = "0.2.20221028.0"; - sha256 = "1cm18g2fv8r11picmq2rf4hz77j2dgx6r6cdamdsq1ap0hv2jdqv"; + version = "0.2.20221129.0"; + sha256 = "1fclrprpm9cgdyvcaninrxz428n2562sanabik0yayikppdpagcc"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base bytestring containers deepseq vector @@ -295803,6 +295113,7 @@ self: { description = "Opinionated Haskell Interoperability"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "unbound" = callPackage @@ -295895,6 +295206,8 @@ self: { libraryHaskellDepends = [ base ghc-prim ]; description = "All the standard sum types but strict and unboxed as possible"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "unboxed-containers" = callPackage @@ -296015,8 +295328,6 @@ self: { ]; description = "Manipulating numbers with inherent experimental/measurement uncertainty"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "unconstrained" = callPackage @@ -296100,8 +295411,6 @@ self: { ]; description = "Class of data structures that can be unfolded"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "unfoldable-restricted" = callPackage @@ -296118,7 +295427,6 @@ self: { ]; description = "An alternative to the Unfoldable typeclass"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "unfork" = callPackage @@ -296333,19 +295641,16 @@ self: { license = lib.licenses.asl20; }) {}; - "unicode-data_0_4_0" = callPackage - ({ mkDerivation, base, deepseq, hspec, hspec-discover, tasty - , tasty-bench - }: + "unicode-data_0_4_0_1" = callPackage + ({ mkDerivation, base, deepseq, hspec, tasty, tasty-bench }: mkDerivation { pname = "unicode-data"; - version = "0.4.0"; - sha256 = "09s1chc7g9sgvjxs6ld5m4vrkm1shf7401ywffjrx1xfdjidb428"; + version = "0.4.0.1"; + sha256 = "1030n3h11hk1rbq0fdbpry3aclz6yz8bki2abjvbwh0rh2kdx99p"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base hspec ]; - testToolDepends = [ hspec-discover ]; benchmarkHaskellDepends = [ base deepseq tasty tasty-bench ]; description = "Access Unicode Character Database (UCD)"; license = lib.licenses.asl20; @@ -296373,16 +295678,15 @@ self: { }) {}; "unicode-data-scripts" = callPackage - ({ mkDerivation, base, deepseq, hspec, hspec-discover, tasty - , tasty-bench, unicode-data + ({ mkDerivation, base, deepseq, hspec, tasty, tasty-bench + , unicode-data }: mkDerivation { pname = "unicode-data-scripts"; - version = "0.2.0"; - sha256 = "13igfgjqkkh5az5cxkqlp51ix34d9m8hgsjqc342hcbbal51zc82"; + version = "0.2.0.1"; + sha256 = "0kpa2g59w9yiyl3adak7k0g9wnkwzv97c82x7bsrqvk23bdljxc0"; libraryHaskellDepends = [ base unicode-data ]; testHaskellDepends = [ base hspec unicode-data ]; - testToolDepends = [ hspec-discover ]; benchmarkHaskellDepends = [ base deepseq tasty tasty-bench unicode-data ]; @@ -296426,6 +295730,8 @@ self: { ]; description = "Unicode General Category Database"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "unicode-names" = callPackage @@ -296750,8 +296056,6 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq lens ]; description = "Extensible type-safe unions"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "union-angle" = callPackage @@ -297351,8 +296655,7 @@ self: { }) {}; "universe-base" = callPackage - ({ mkDerivation, base, containers, ghc-prim, QuickCheck, tagged - , transformers + ({ mkDerivation, base, containers, QuickCheck, tagged, transformers }: mkDerivation { pname = "universe-base"; @@ -297360,9 +296663,7 @@ self: { sha256 = "0lnvjpndqj7kk3f95dmpa62ax0m243h8iy7ghcsd2db4nyczx7f5"; revision = "3"; editedCabalFile = "0hnd5vxsncwyjsindfmsvp9jbixanhmzczhrmd8s8g6imgb0mzyk"; - libraryHaskellDepends = [ - base containers ghc-prim tagged transformers - ]; + libraryHaskellDepends = [ base containers tagged transformers ]; testHaskellDepends = [ base containers QuickCheck ]; description = "A class for finite and recursively enumerable types"; license = lib.licenses.bsd3; @@ -297487,31 +296788,6 @@ self: { }) {}; "universum" = callPackage - ({ mkDerivation, base, bytestring, containers, deepseq, doctest - , gauge, ghc-prim, Glob, hashable, hedgehog, microlens - , microlens-mtl, mtl, safe-exceptions, stm, tasty, tasty-hedgehog - , text, transformers, unordered-containers, utf8-string, vector - }: - mkDerivation { - pname = "universum"; - version = "1.7.3"; - sha256 = "1dhdj72anj3r50idzn45l63zdwkckmbvll65rkwbsn4jj7pd033d"; - libraryHaskellDepends = [ - base bytestring containers deepseq ghc-prim hashable microlens - microlens-mtl mtl safe-exceptions stm text transformers - unordered-containers utf8-string vector - ]; - testHaskellDepends = [ - base bytestring doctest Glob hedgehog tasty tasty-hedgehog text - ]; - benchmarkHaskellDepends = [ - base containers gauge text unordered-containers - ]; - description = "Custom prelude used in Serokell"; - license = lib.licenses.mit; - }) {}; - - "universum_1_8_1" = callPackage ({ mkDerivation, base, bytestring, containers, deepseq, gauge , ghc-prim, hashable, hedgehog, microlens, microlens-mtl, mtl , safe-exceptions, stm, tasty, tasty-discover, tasty-hedgehog, text @@ -297535,7 +296811,6 @@ self: { ]; description = "Custom prelude used in Serokell"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "unix_2_8_0_0" = callPackage @@ -297782,6 +297057,8 @@ self: { ]; description = "Typeclass for monads that can be unlifted to arbitrary base monads"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "unlift-stm" = callPackage @@ -297882,9 +297159,7 @@ self: { ]; description = "Fast and robust message queues for concurrent processes"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; mainProgram = "unliftio-messagebox-memleak-test"; - broken = true; }) {}; "unliftio-path" = callPackage @@ -297974,28 +297249,6 @@ self: { }) {}; "unordered-containers" = callPackage - ({ mkDerivation, base, bytestring, ChasingBottoms, containers - , deepseq, hashable, hashmap, HUnit, mtl, QuickCheck, random, tasty - , tasty-bench, tasty-hunit, tasty-quickcheck, template-haskell - }: - mkDerivation { - pname = "unordered-containers"; - version = "0.2.17.0"; - sha256 = "05ss6ys9gp7dx93glhrm19fxdl916m7yaqxi6p06ibka1dp3m7n4"; - libraryHaskellDepends = [ base deepseq hashable template-haskell ]; - testHaskellDepends = [ - base ChasingBottoms containers hashable HUnit QuickCheck random - tasty tasty-hunit tasty-quickcheck - ]; - benchmarkHaskellDepends = [ - base bytestring containers deepseq hashable hashmap mtl random - tasty-bench - ]; - description = "Efficient hashing-based container types"; - license = lib.licenses.bsd3; - }) {}; - - "unordered-containers_0_2_19_1" = callPackage ({ mkDerivation, base, bytestring, ChasingBottoms, containers , deepseq, hashable, hashmap, HUnit, mtl, nothunks, QuickCheck , random, tasty, tasty-bench, tasty-hunit, tasty-quickcheck @@ -298018,7 +297271,6 @@ self: { ]; description = "Efficient hashing-based container types"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "unordered-containers-rematch" = callPackage @@ -298141,13 +297393,13 @@ self: { "unpacked-maybe-numeric" = callPackage ({ mkDerivation, base, primitive, QuickCheck, quickcheck-classes - , wide-word + , wide-word, word-compat }: mkDerivation { pname = "unpacked-maybe-numeric"; - version = "0.1.2.0"; - sha256 = "08cm7121c2ddj2fqfjhqjs3y1yskzcsxjq2q8pbq1ndicmlrw1b0"; - libraryHaskellDepends = [ base primitive wide-word ]; + version = "0.1.2.1"; + sha256 = "0chb52gff3zm6f6p7dp5j6p7vpgmmirx0sfqbswx69w9jsf6p8bk"; + libraryHaskellDepends = [ base primitive wide-word word-compat ]; testHaskellDepends = [ base QuickCheck quickcheck-classes ]; description = "maybes of numeric values with fewer indirections"; license = lib.licenses.bsd3; @@ -298159,6 +297411,8 @@ self: { pname = "unpacked-maybe-text"; version = "0.1.0.0"; sha256 = "10mc9kjjqf82ddi586g5r6h065znhj9s0ih9w800yw4xl65ygayv"; + revision = "1"; + editedCabalFile = "0g24c223yxsvkzk0y78q9qn94xxvmw088ihwk3rrd2q3l2nax4rw"; libraryHaskellDepends = [ base bytestring text-short ]; description = "optional text that unpacks well"; license = lib.licenses.bsd3; @@ -298291,6 +297545,8 @@ self: { libraryHaskellDepends = [ base ghc ]; description = "Unsatisfiable type class"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "unscramble" = callPackage @@ -298464,8 +297720,8 @@ self: { }: mkDerivation { pname = "update-nix-fetchgit"; - version = "0.2.9"; - sha256 = "0wdw03pl5bx8vsi3kg4l902ah2l1v4x8922g9malyqyh3bvqfham"; + version = "0.2.11"; + sha256 = "07wabhr8hfz4f504wfi9achrl9h6iqn5sphkqfrydzfj7p7nyn9f"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -299027,6 +298283,7 @@ self: { ]; description = "Painfully simple URL deployment"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "urn" = callPackage @@ -299378,14 +298635,15 @@ self: { }) {}; "utf8-light" = callPackage - ({ mkDerivation, base, bytestring, ghc-prim }: + ({ mkDerivation, base, bytestring, ghc-prim, hspec, hspec-discover + }: mkDerivation { pname = "utf8-light"; - version = "0.4.2"; - sha256 = "0rwyc5z331yfnm4hpx0sph6i1zvkd1z10vvglhnp0vc9wy644k0q"; - revision = "1"; - editedCabalFile = "08fwf4pchlrmqrk78wijncrkvv0kssl1140xm9cfl7rd2y97cs7n"; + version = "0.4.4.0"; + sha256 = "0415hapndlsnzvmm3bk2fl42h4vn1izky7jb3lbby3mzzzd8d1fx"; libraryHaskellDepends = [ base bytestring ghc-prim ]; + testHaskellDepends = [ base bytestring ghc-prim hspec ]; + testToolDepends = [ hspec-discover ]; description = "Unicode"; license = lib.licenses.bsd3; }) {}; @@ -299692,6 +298950,7 @@ self: { executableHaskellDepends = [ base uuagc-cabal ]; description = "Attribute Grammar System of Universiteit Utrecht"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "uuagc"; }) {}; @@ -299733,6 +298992,8 @@ self: { ]; description = "Cabal plugin for UUAGC"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "uuagc-diagrams" = callPackage @@ -299925,7 +299186,9 @@ self: { testHaskellDepends = [ base Cabal HUnit text ]; description = "Tweak .cabal files"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.berberman ]; + broken = true; }) {}; "uvector" = callPackage @@ -300872,7 +300135,6 @@ self: { description = "Common types and instances for Vaultaire"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "vcache" = callPackage @@ -301189,8 +300451,8 @@ self: { }) {}; "vector_0_13_0_0" = callPackage - ({ mkDerivation, base, base-orphans, deepseq, HUnit, primitive - , QuickCheck, random, tasty, tasty-bench, tasty-hunit + ({ mkDerivation, base, base-orphans, deepseq, doctest, HUnit + , primitive, QuickCheck, random, tasty, tasty-bench, tasty-hunit , tasty-inspection-testing, tasty-quickcheck, template-haskell , transformers, vector-stream }: @@ -301202,7 +300464,7 @@ self: { editedCabalFile = "12cwdaqsy9dv7j7cwq6r6kdyfxqiya8khm6ccaabjhhpa2aqwljl"; libraryHaskellDepends = [ base deepseq primitive vector-stream ]; testHaskellDepends = [ - base base-orphans HUnit primitive QuickCheck random tasty + base base-orphans doctest HUnit primitive QuickCheck random tasty tasty-hunit tasty-inspection-testing tasty-quickcheck template-haskell transformers ]; @@ -301272,8 +300534,8 @@ self: { pname = "vector-binary-instances"; version = "0.2.5.2"; sha256 = "0kgmlb4rf89b18d348cf2k06xfhdpamhmvq7iz5pab5014hknbmp"; - revision = "2"; - editedCabalFile = "149gn5n722r2skj5w46av3944fbw3882qkaydq7asm6zx5kc0nj6"; + revision = "3"; + editedCabalFile = "0av0k2gn90mf5ai74575bd368x73ljnr7xlkwsqmrs6zdzkw0i83"; libraryHaskellDepends = [ base binary vector ]; testHaskellDepends = [ base binary tasty tasty-quickcheck vector ]; benchmarkHaskellDepends = [ @@ -301447,6 +300709,23 @@ self: { license = lib.licenses.mit; }) {}; + "vector-extras_0_2_8" = callPackage + ({ mkDerivation, base, containers, deferred-folds, foldl, hashable + , unordered-containers, vector + }: + mkDerivation { + pname = "vector-extras"; + version = "0.2.8"; + sha256 = "1xnz733p9p66693hb31fmq2cfsy2rwyw1b0915p7y5my1d8dxyzi"; + libraryHaskellDepends = [ + base containers deferred-folds foldl hashable unordered-containers + vector + ]; + description = "Utilities for the \"vector\" library"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "vector-fft" = callPackage ({ mkDerivation, base, primitive, vector }: mkDerivation { @@ -301810,6 +301089,7 @@ self: { ]; description = "GIS Vector Tiles, as defined by Mapbox"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "vega-view" = callPackage @@ -301829,7 +301109,9 @@ self: { ]; description = "Easily view Vega or Vega-Lite visualizations"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "vegaview"; + broken = true; }) {}; "velma" = callPackage @@ -301849,9 +301131,7 @@ self: { testHaskellDepends = [ base Cabal filepath hspec text ]; description = "Automatically add files to exposed-modules and other-modules"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "velma"; - broken = true; }) {}; "venzone" = callPackage @@ -302045,7 +301325,6 @@ self: { license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; mainProgram = "verismith"; - broken = true; }) {}; "verset" = callPackage @@ -302061,6 +301340,8 @@ self: { ]; description = "Small alternative prelude"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "versioning" = callPackage @@ -302073,6 +301354,8 @@ self: { testHaskellDepends = [ aeson base bytestring hspec ]; description = "Type-safe data versioning"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "versioning-servant" = callPackage @@ -302094,7 +301377,6 @@ self: { description = "Servant combinators for the versioning library"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "versions" = callPackage @@ -302119,22 +301401,24 @@ self: { "vessel" = callPackage ({ mkDerivation, aeson, aeson-gadt-th, base, base-orphans - , bifunctors, constraints, constraints-extras, containers - , dependent-map, dependent-monoidal-map, dependent-sum + , bifunctors, commutative-semigroups, constraints + , constraints-extras, containers, dependent-map + , dependent-monoidal-map, dependent-sum , dependent-sum-aeson-orphans, dependent-sum-template, lens , markdown-unlit, monoidal-containers, mtl, patch, reflex , semialign, text, these, witherable }: mkDerivation { pname = "vessel"; - version = "0.2.1.0"; - sha256 = "04pvn5rs3pgi917m0rsfmjxc035ns8sd79vza72qh0skvsg81pq6"; + version = "0.3.0.0"; + sha256 = "1vqbrz8g9r43q6rqall6xhw6f4c56fj6lwp6cz0758fr7n4n3mqa"; libraryHaskellDepends = [ - aeson aeson-gadt-th base base-orphans bifunctors constraints - constraints-extras containers dependent-map dependent-monoidal-map - dependent-sum dependent-sum-aeson-orphans dependent-sum-template - lens markdown-unlit monoidal-containers mtl patch reflex semialign - text these witherable + aeson aeson-gadt-th base base-orphans bifunctors + commutative-semigroups constraints constraints-extras containers + dependent-map dependent-monoidal-map dependent-sum + dependent-sum-aeson-orphans dependent-sum-template lens + markdown-unlit monoidal-containers mtl patch reflex semialign text + these witherable ]; libraryToolDepends = [ markdown-unlit ]; doHaddock = false; @@ -302182,6 +301466,8 @@ self: { ]; description = "A Python str.format() like formatter"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "vformat-aeson" = callPackage @@ -302205,7 +301491,6 @@ self: { description = "Extend vformat to Aeson datatypes"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "vformat-time" = callPackage @@ -302220,6 +301505,7 @@ self: { testHaskellDepends = [ base time vformat ]; description = "Extend vformat to time datatypes"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "vfr-waypoints" = callPackage @@ -302276,7 +301562,9 @@ self: { ]; description = "A pager for grep"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "vgrep"; + broken = true; }) {}; "vhd" = callPackage @@ -302495,28 +301783,6 @@ self: { }) {}; "vinyl" = callPackage - ({ mkDerivation, aeson, array, base, criterion, deepseq, ghc-prim - , hspec, lens, lens-aeson, linear, microlens, mtl, mwc-random - , primitive, should-not-typecheck, tagged, text - , unordered-containers, vector - }: - mkDerivation { - pname = "vinyl"; - version = "0.13.3"; - sha256 = "0mlk94n3s4ah8y9w9vcrk1n7gnsm19d1iijk9da4219dwrkaax2l"; - libraryHaskellDepends = [ array base deepseq ghc-prim ]; - testHaskellDepends = [ - aeson base hspec lens lens-aeson microlens mtl should-not-typecheck - text unordered-containers vector - ]; - benchmarkHaskellDepends = [ - base criterion linear microlens mwc-random primitive tagged vector - ]; - description = "Extensible Records"; - license = lib.licenses.mit; - }) {}; - - "vinyl_0_14_3" = callPackage ({ mkDerivation, aeson, array, base, criterion, deepseq, ghc-prim , hspec, lens, lens-aeson, linear, microlens, mtl, mwc-random , primitive, should-not-typecheck, tagged, text @@ -302536,7 +301802,6 @@ self: { ]; description = "Extensible Records"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "vinyl-generics" = callPackage @@ -302554,6 +301819,7 @@ self: { ]; description = "Convert plain records to vinyl (and vice versa), generically"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "vinyl-gl" = callPackage @@ -302815,7 +302081,9 @@ self: { ]; description = "Visualize CBN reduction"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "visualize-cbn"; + broken = true; }) {}; "vitrea" = callPackage @@ -303053,6 +302321,7 @@ self: { ]; description = "Reading of Vorbis comments from Ogg Vorbis files"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "vowpal-utils" = callPackage @@ -303204,43 +302473,6 @@ self: { broken = true; }) {inherit (pkgs) vte;}; - "vty" = callPackage - ({ mkDerivation, ansi-terminal, base, binary, blaze-builder - , bytestring, Cabal, containers, deepseq, directory, filepath - , hashable, HUnit, microlens, microlens-mtl, microlens-th, mtl - , parallel, parsec, QuickCheck, quickcheck-assertions, random - , smallcheck, stm, string-qq, terminfo, test-framework - , test-framework-hunit, test-framework-smallcheck, text - , transformers, unix, utf8-string, vector - }: - mkDerivation { - pname = "vty"; - version = "5.33"; - sha256 = "0qsx4lwlkp6mwyr7rm1r9dg5ic1lc1awqgyag0nj1qgj2gnv6nc9"; - revision = "1"; - editedCabalFile = "1in66nd2xkb6mxxzazny900pz1xj83iqsql42c0rwk72chnnb8cd"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - ansi-terminal base binary blaze-builder bytestring containers - deepseq directory filepath hashable microlens microlens-mtl - microlens-th mtl parallel parsec stm terminfo text transformers - unix utf8-string vector - ]; - executableHaskellDepends = [ - base containers directory filepath microlens microlens-mtl mtl - ]; - testHaskellDepends = [ - base blaze-builder bytestring Cabal containers deepseq HUnit - microlens microlens-mtl mtl QuickCheck quickcheck-assertions random - smallcheck stm string-qq terminfo test-framework - test-framework-hunit test-framework-smallcheck text unix - utf8-string vector - ]; - description = "A simple terminal UI library"; - license = lib.licenses.bsd3; - }) {}; - "vty_5_35_1" = callPackage ({ mkDerivation, ansi-terminal, base, binary, blaze-builder , bytestring, Cabal, containers, deepseq, directory, filepath @@ -303277,7 +302509,7 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "vty_5_37" = callPackage + "vty" = callPackage ({ mkDerivation, ansi-terminal, base, binary, blaze-builder , bytestring, Cabal, containers, deepseq, directory, filepath , hashable, HUnit, microlens, microlens-mtl, microlens-th, mtl @@ -303310,7 +302542,6 @@ self: { ]; description = "A simple terminal UI library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "vty-examples" = callPackage @@ -303828,38 +303059,6 @@ self: { }) {}; "wai-extra" = callPackage - ({ mkDerivation, aeson, ansi-terminal, base, base64-bytestring - , bytestring, call-stack, case-insensitive, containers, cookie - , data-default-class, directory, fast-logger, hspec, http-types - , http2, HUnit, iproute, network, resourcet, streaming-commons - , temporary, text, time, transformers, unix, vault, wai, wai-logger - , word8, zlib - }: - mkDerivation { - pname = "wai-extra"; - version = "3.1.12.1"; - sha256 = "1ya4m0c2p3wxzjlmk3yasc3pm61z309hzry9d39lj5wqv93a4wn6"; - revision = "2"; - editedCabalFile = "139iqd6fqqj9xlpnbgva8y3wvakp2lyndk4bkvq46pq2xir4gqkf"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson ansi-terminal base base64-bytestring bytestring call-stack - case-insensitive containers cookie data-default-class directory - fast-logger http-types http2 HUnit iproute network resourcet - streaming-commons text time transformers unix vault wai wai-logger - word8 - ]; - testHaskellDepends = [ - aeson base bytestring case-insensitive cookie directory fast-logger - hspec http-types http2 HUnit iproute resourcet temporary text time - transformers wai zlib - ]; - description = "Provides some basic WAI handlers and middleware"; - license = lib.licenses.mit; - }) {}; - - "wai-extra_3_1_13_0" = callPackage ({ mkDerivation, aeson, ansi-terminal, base, base64-bytestring , bytestring, call-stack, case-insensitive, containers, cookie , data-default-class, directory, fast-logger, hspec, hspec-discover @@ -303890,7 +303089,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Provides some basic WAI handlers and middleware"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "wai-feature-flags" = callPackage @@ -303927,6 +303125,7 @@ self: { ]; description = "Run CGI apps on WAI"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; }) {}; "wai-git-http" = callPackage @@ -304027,8 +303226,6 @@ self: { testToolDepends = [ tasty-discover ]; description = "Wrap WAI applications to run on AWS Lambda"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "wai-handler-launch" = callPackage @@ -304215,14 +303412,15 @@ self: { }: mkDerivation { pname = "wai-log"; - version = "0.3.0.0"; - sha256 = "0mgby05lq9j31ssyk2yp6mghqwgpffkki7pygday1lmg130n8n74"; + version = "0.4.0.1"; + sha256 = "02lrbvl1rj3jmm9z2mjrkss0lz7jz8xx6cknznd2i4rhirl1vlhr"; libraryHaskellDepends = [ aeson base bytestring http-types log-base string-conversions text time uuid wai ]; description = "A logging middleware for WAI applications"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "wai-logger" = callPackage @@ -304579,6 +303777,7 @@ self: { ]; description = "Route to different middlewares based on the incoming Accept header"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "wai-middleware-crowd" = callPackage @@ -305020,6 +304219,7 @@ self: { ]; description = "Route Wai middlewares based on HTTP verbs"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "wai-predicates" = callPackage @@ -305047,17 +304247,6 @@ self: { }) {}; "wai-rate-limit" = callPackage - ({ mkDerivation, base, http-types, wai }: - mkDerivation { - pname = "wai-rate-limit"; - version = "0.2.0.0"; - sha256 = "1jxg6sdbzx20dlxwbjw4b5x9qc1hsx2hzqxgzks3wlj6jc8ar4rx"; - libraryHaskellDepends = [ base http-types wai ]; - description = "Rate limiting as WAI middleware"; - license = lib.licenses.mit; - }) {}; - - "wai-rate-limit_0_3_0_0" = callPackage ({ mkDerivation, base, http-types, time-units, wai }: mkDerivation { pname = "wai-rate-limit"; @@ -305066,7 +304255,6 @@ self: { libraryHaskellDepends = [ base http-types time-units wai ]; description = "Rate limiting as WAI middleware"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "wai-rate-limit-postgres" = callPackage @@ -305164,6 +304352,7 @@ self: { ]; description = "WAI middleware for path-based request routing with captures"; license = lib.licenses.mpl20; + hydraPlatforms = lib.platforms.none; }) {}; "wai-router" = callPackage @@ -305233,24 +304422,6 @@ self: { }) {}; "wai-saml2" = callPackage - ({ mkDerivation, base, base64-bytestring, bytestring, c14n - , cryptonite, data-default-class, http-types, mtl, text, time - , vault, wai, wai-extra, x509, x509-store, xml-conduit - }: - mkDerivation { - pname = "wai-saml2"; - version = "0.2.1.3"; - sha256 = "1q1il1lwzinpyhkqrg62hwh7kbb2dyhrlynpzhc9kps00kfxg8zw"; - libraryHaskellDepends = [ - base base64-bytestring bytestring c14n cryptonite - data-default-class http-types mtl text time vault wai wai-extra - x509 x509-store xml-conduit - ]; - description = "SAML2 assertion validation as WAI middleware"; - license = lib.licenses.mit; - }) {}; - - "wai-saml2_0_3_0_1" = callPackage ({ mkDerivation, base, base64-bytestring, bytestring, c14n , cryptonite, data-default-class, filepath, http-types, mtl , pretty-show, tasty, tasty-golden, text, time, vault, wai @@ -305273,7 +304444,6 @@ self: { ]; description = "SAML2 assertion validation as WAI middleware"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "wai-secure-cookies" = callPackage @@ -305333,7 +304503,6 @@ self: { description = "An alternative session middleware for WAI"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "wai-session-clientsession" = callPackage @@ -305551,6 +304720,7 @@ self: { transformers wai wai-websockets websockets ]; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "wai-util" = callPackage @@ -305742,44 +304912,12 @@ self: { ]; description = "A parser for the Web Archive (WARC) format"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; mainProgram = "warc-export"; + broken = true; }) {}; "warp" = callPackage - ({ mkDerivation, array, async, auto-update, base, bsb-http-chunked - , bytestring, case-insensitive, containers, directory, gauge - , ghc-prim, hashable, hspec, hspec-discover, http-client, http-date - , http-types, http2, HUnit, iproute, network, process, QuickCheck - , simple-sendfile, stm, streaming-commons, text, time, time-manager - , unix, unix-compat, unliftio, vault, wai, word8, x509 - }: - mkDerivation { - pname = "warp"; - version = "3.3.21"; - sha256 = "0vrzsj1spa5ygplqpkl4nflqxqbvy641dsjij64ix3n6rzhgqxcg"; - libraryHaskellDepends = [ - array auto-update base bsb-http-chunked bytestring case-insensitive - containers ghc-prim hashable http-date http-types http2 iproute - network simple-sendfile stm streaming-commons text time-manager - unix unix-compat unliftio vault wai word8 x509 - ]; - testHaskellDepends = [ - array async auto-update base bsb-http-chunked bytestring - case-insensitive containers directory ghc-prim hashable hspec - http-client http-date http-types http2 HUnit iproute network - process QuickCheck simple-sendfile stm streaming-commons text time - time-manager unix unix-compat unliftio vault wai word8 x509 - ]; - testToolDepends = [ hspec-discover ]; - benchmarkHaskellDepends = [ - auto-update base bytestring containers gauge hashable http-date - http-types network time-manager unix unix-compat unliftio x509 - ]; - description = "A fast, light-weight web server for WAI applications"; - license = lib.licenses.mit; - }) {}; - - "warp_3_3_23" = callPackage ({ mkDerivation, array, auto-update, base, bsb-http-chunked , bytestring, case-insensitive, containers, directory, gauge , ghc-prim, hashable, hspec, hspec-discover, http-client, http-date @@ -305811,7 +304949,6 @@ self: { ]; description = "A fast, light-weight web server for WAI applications"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "warp-dynamic" = callPackage @@ -305849,7 +304986,6 @@ self: { description = "A minimal gRPC server on top of Warp"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "warp-quic" = callPackage @@ -305902,25 +305038,6 @@ self: { }) {}; "warp-tls" = callPackage - ({ mkDerivation, base, bytestring, cryptonite, data-default-class - , network, streaming-commons, tls, tls-session-manager, unliftio - , wai, warp - }: - mkDerivation { - pname = "warp-tls"; - version = "3.3.2"; - sha256 = "0b9viw26ymzq4q8snfddz3w59sqcf5ankxnw6f99iacxjhk6zs6m"; - revision = "1"; - editedCabalFile = "0r4g0j4kcz9rx776mp8hqd06k8b2k7kxd4qjavh2ay6wcplfl0bl"; - libraryHaskellDepends = [ - base bytestring cryptonite data-default-class network - streaming-commons tls tls-session-manager unliftio wai warp - ]; - description = "HTTP over TLS support for Warp via the TLS package"; - license = lib.licenses.mit; - }) {}; - - "warp-tls_3_3_4" = callPackage ({ mkDerivation, base, bytestring, cryptonite, data-default-class , network, streaming-commons, tls, tls-session-manager, unliftio , wai, warp @@ -305935,7 +305052,6 @@ self: { ]; description = "HTTP over TLS support for Warp via the TLS package"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; }) {}; "warp-tls-uid" = callPackage @@ -306466,7 +305582,6 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "web-rep-example"; - broken = true; }) {}; "web-routes" = callPackage @@ -306948,7 +306063,6 @@ self: { license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; mainProgram = "testcloud"; - broken = true; }) {}; "webcrank" = callPackage @@ -307025,10 +306139,8 @@ self: { }: mkDerivation { pname = "webdriver"; - version = "0.9.0.1"; - sha256 = "1w6z95swrz5ijmcxh0x3i521kpxqfp6pxgqfqwix7fc4jy450n8k"; - revision = "1"; - editedCabalFile = "04bl53yr1144a3nv9avqjvhl20q0qc5gik6p7cd2naz3i5hfvid1"; + version = "0.10.0.0"; + sha256 = "02vm6wncjzcxmakabnjklkybcyylksfkpj1za541rrjv448zi7qj"; libraryHaskellDepends = [ aeson attoparsec base base64-bytestring bytestring call-stack data-default-class directory directory-tree exceptions filepath @@ -307038,8 +306150,6 @@ self: { ]; description = "a Haskell client for the Selenium WebDriver protocol"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "webdriver-angular" = callPackage @@ -307062,6 +306172,7 @@ self: { description = "Webdriver actions to assist with testing a webpage which uses Angular.Js"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "webdriver-snoy" = callPackage @@ -307209,9 +306320,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "Pipes wrapper of Webex Teams List API"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "webex-teams-pipes-exe"; - broken = true; }) {}; "webfinger-client" = callPackage @@ -307333,6 +306442,7 @@ self: { ]; description = "webfont generator"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "webify"; maintainers = [ lib.maintainers.erictapen ]; }) {}; @@ -307578,6 +306688,19 @@ self: { license = lib.licenses.bsd3; }) {}; + "websockets-json" = callPackage + ({ mkDerivation, aeson, base, bytestring, exceptions, websockets }: + mkDerivation { + pname = "websockets-json"; + version = "1.0.0"; + sha256 = "1kiicrf7gksggjy0pd5z0kbpg5xxfklabcwp1fhzwk468m3nnsah"; + libraryHaskellDepends = [ + aeson base bytestring exceptions websockets + ]; + description = "Extras for working with websockets & JSON"; + license = lib.licenses.mpl20; + }) {}; + "websockets-rpc" = callPackage ({ mkDerivation, aeson, async, base, bytestring, containers , exceptions, hashable, monad-control, mtl, QuickCheck @@ -307604,7 +306727,6 @@ self: { description = "Simple streaming RPC mechanism using WebSockets"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "websockets-simple" = callPackage @@ -307629,6 +306751,7 @@ self: { ]; description = "Composable websockets clients"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "websockets-simple-extra" = callPackage @@ -307639,6 +306762,7 @@ self: { sha256 = "1ckni1imxh4k1nxivvj9p1mffzvdmyjc20nas8b90dkkxblgnk1j"; libraryHaskellDepends = [ base mtl websockets-simple ]; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "websockets-snap" = callPackage @@ -307649,6 +306773,8 @@ self: { pname = "websockets-snap"; version = "0.10.3.1"; sha256 = "1hpszqb61xhbgfvxd6g56kdfxsyi14q7xh12jbdnyycbfijb9bqk"; + revision = "1"; + editedCabalFile = "08rz1l4f84gcp2a2rsihk6zl3jm2x4igr13fwv2y8m5agsvd2lhy"; libraryHaskellDepends = [ base bytestring bytestring-builder io-streams mtl snap-core snap-server websockets @@ -308212,7 +307338,6 @@ self: { ]; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "why3" = callPackage @@ -308236,16 +307361,18 @@ self: { }) {}; "wide-word" = callPackage - ({ mkDerivation, base, bytestring, deepseq, ghc-prim, hedgehog - , primitive, QuickCheck, quickcheck-classes, semirings + ({ mkDerivation, base, bytestring, deepseq, ghc-prim, hashable + , hedgehog, primitive, QuickCheck, quickcheck-classes, semirings }: mkDerivation { pname = "wide-word"; - version = "0.1.1.2"; - sha256 = "10sj7nca2sba74bkiicnp95xrfq2j1al93ggw3z24982nm9x3j8r"; - revision = "4"; - editedCabalFile = "150ikl5cf15lbk383pv1w8smpwbp0dzc0vby653fbzm8a2svcx76"; - libraryHaskellDepends = [ base deepseq primitive ]; + version = "0.1.3.0"; + sha256 = "03g0v5zp3ra2z31vyjkhgd23s2dyaks640y2imkv649fcvvz33xj"; + revision = "1"; + editedCabalFile = "1y1w3ih92dni6bzp4w1hcwn96ahdrk34lmqrgkri2dcdkykwyqwb"; + libraryHaskellDepends = [ + base deepseq ghc-prim hashable primitive + ]; testHaskellDepends = [ base bytestring ghc-prim hedgehog primitive QuickCheck quickcheck-classes semirings @@ -308302,8 +307429,8 @@ self: { }: mkDerivation { pname = "wikicfp-scraper"; - version = "0.1.0.12"; - sha256 = "03l8ggnnkq7gx5qf9rrng50wb5cabyam8vrs2bnrm02gcgjx89sx"; + version = "0.1.0.13"; + sha256 = "17gsx48zx2zzf755bapr4gv1h3kiyy4ni332i2a7fs14h08qh764"; libraryHaskellDepends = [ attoparsec base bytestring scalpel-core text time ]; @@ -308340,8 +307467,8 @@ self: { }: mkDerivation { pname = "wild-bind"; - version = "0.1.2.8"; - sha256 = "1ag0lwh5pii8z356sii2zm2i7qyk9q9j7ivc3x0fkvz6p5gk1aj1"; + version = "0.1.2.9"; + sha256 = "1jnknyf3lwc0bk50llpqh3mpvn78h36f6h359z9sbwacxpsr8526"; libraryHaskellDepends = [ base containers semigroups text transformers ]; @@ -308393,8 +307520,8 @@ self: { }: mkDerivation { pname = "wild-bind-x11"; - version = "0.2.0.14"; - sha256 = "0qxzv4xvqqm7xcz17a3h1pgc3g84dp3676vb40yi9dfxdwag3xxs"; + version = "0.2.0.15"; + sha256 = "14yxm16cqmmrx6sag8xjnwzwhcyqbmpx0vhslny2r0b5bmnjn2dn"; libraryHaskellDepends = [ base containers fold-debounce mtl semigroups stm text transformers wild-bind X11 @@ -308585,6 +307712,7 @@ self: { ]; description = "Fast binary io-streams adapter"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "wireguard-hs" = callPackage @@ -308664,8 +307792,8 @@ self: { }: mkDerivation { pname = "witch"; - version = "1.0.2.0"; - sha256 = "1vmn412w11dc1qgw12g0wa6v0miggicgdd7ndml4k4b04sdqbdhq"; + version = "1.1.5.0"; + sha256 = "1lg3kdy18d1cabb39hrj7k9s4ryc1bfrx6ln5k3j640ankdv1asj"; libraryHaskellDepends = [ base bytestring containers tagged template-haskell text time ]; @@ -308677,26 +307805,6 @@ self: { maintainers = [ lib.maintainers.maralorn ]; }) {}; - "witch_1_1_2_0" = callPackage - ({ mkDerivation, base, bytestring, containers, HUnit, tagged - , template-haskell, text, time, transformers - }: - mkDerivation { - pname = "witch"; - version = "1.1.2.0"; - sha256 = "1ahikszzypycjilz0749wwcfppk8xdc1n4q97nxbf33h13jpaxax"; - libraryHaskellDepends = [ - base bytestring containers tagged template-haskell text time - ]; - testHaskellDepends = [ - base bytestring containers HUnit tagged text time transformers - ]; - description = "Convert values from one type into another"; - license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - maintainers = [ lib.maintainers.maralorn ]; - }) {}; - "with-index" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -308821,8 +307929,6 @@ self: { libraryHaskellDepends = [ base constraints containers countable ]; description = "values that witness types"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "witty" = callPackage @@ -308973,6 +308079,8 @@ self: { ]; description = "Wadler/Leijen pretty printer supporting colorful console output"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "wl-pprint-extras" = callPackage @@ -309717,6 +308825,8 @@ self: { ]; description = "LOGO-like Turtle graphics with a monadic interface"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "wp-archivebot" = callPackage @@ -309765,8 +308875,8 @@ self: { pname = "wrapped"; version = "0.1.0.1"; sha256 = "00fvammhn4dlna5d1dc8lpwrdrigj9cnlyi8scwslibr6bjsjzfp"; - revision = "3"; - editedCabalFile = "1z7p0kx98yn3jwpghhs1360r4pvrg1vvj66p8w6npvbb5nv6z99j"; + revision = "4"; + editedCabalFile = "103b654pm0figxqjb6bchi975q2rf0r7y2zhygic86j2089k3fcl"; libraryHaskellDepends = [ base ]; description = "Newtypes to carry DerivingVia instances"; license = lib.licenses.asl20; @@ -309778,8 +308888,8 @@ self: { pname = "wrapped-generic-default"; version = "0.1.0.1"; sha256 = "10hbz8m98cw8lr2xj0wkc017pnypagb11ss1ihpp6lnc4w1hpj3f"; - revision = "3"; - editedCabalFile = "0hax0aq1sbjhmr62y9wf04k9c0zd3vj1drk3dkmlvbxmnxhdix87"; + revision = "4"; + editedCabalFile = "1zyrdx018xz6xqpw0x3nz98nx9zw4kpr5l8c1q3fdk9jw2afa5sq"; libraryHaskellDepends = [ base data-default-class wrapped ]; description = "A Generic instance of Default"; license = lib.licenses.asl20; @@ -310322,7 +309432,6 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "wsjtx-dump-udp"; - broken = true; }) {}; "wss-client" = callPackage @@ -310341,6 +309450,8 @@ self: { testHaskellDepends = [ base bytestring envy hspec skews text ]; description = "A-little-higher-level WebSocket client"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "wstunnel" = callPackage @@ -310436,6 +309547,7 @@ self: { ]; description = "Code for the dice chain problem"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "wumpus-basic" = callPackage @@ -310937,8 +310049,8 @@ self: { }: mkDerivation { pname = "xcffib"; - version = "0.12.1"; - sha256 = "0qpbm9jncpj7jy9xsbl1xy84mw2kmnfbd0m7g0qng80cifzvkqhi"; + version = "1.1.2"; + sha256 = "068g730p0rbsf1l7k9jgc9d7ng0zx3552wqk357wl3q56jac0chs"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -311959,8 +311071,8 @@ self: { }: mkDerivation { pname = "xml-parser"; - version = "0.1.1"; - sha256 = "06a8pci3jr3mdrsh8708i61rqd2rsgqyf86s269ycca6xlbrgwzh"; + version = "0.1.1.1"; + sha256 = "13af7yfxn1m7clhzxsbkd6q1nr8dslv39w4hvyhca0l7adplyyw3"; libraryHaskellDepends = [ attoparsec base bytestring containers hashable text text-builder transformers unordered-containers xml-conduit @@ -312040,7 +311152,9 @@ self: { benchmarkHaskellDepends = [ base gauge protolude ]; description = "XML pretty printer"; license = lib.licenses.gpl2Only; + hydraPlatforms = lib.platforms.none; mainProgram = "xml-prettify"; + broken = true; }) {}; "xml-push" = callPackage @@ -312135,6 +311249,8 @@ self: { ]; description = "Parse XML from bytes"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "xml-to-json" = callPackage @@ -312304,17 +311420,18 @@ self: { }) {}; "xmlbf" = callPackage - ({ mkDerivation, base, bytestring, containers, deepseq, QuickCheck - , quickcheck-instances, selective, tasty, tasty-hunit - , tasty-quickcheck, text, transformers, unordered-containers + ({ mkDerivation, base, bytestring, containers, deepseq, exceptions + , mmorph, mtl, QuickCheck, quickcheck-instances, selective, tasty + , tasty-hunit, tasty-quickcheck, text, transformers + , unordered-containers }: mkDerivation { pname = "xmlbf"; - version = "0.6.1"; - sha256 = "0xhpg10bqmv9cd4sw0vf2vvvyyas3xd36lwarbh5l78hylmibnlf"; + version = "0.7"; + sha256 = "0zqim6cz8wlvhzxpk5q8wk69a6vm4z9j0pyr1jkhd495gphzkysy"; libraryHaskellDepends = [ - base bytestring containers deepseq selective text transformers - unordered-containers + base bytestring containers deepseq exceptions mmorph mtl selective + text transformers unordered-containers ]; testHaskellDepends = [ base bytestring QuickCheck quickcheck-instances tasty tasty-hunit @@ -312325,42 +311442,38 @@ self: { }) {}; "xmlbf-xeno" = callPackage - ({ mkDerivation, base, bytestring, html-entities, QuickCheck - , quickcheck-instances, tasty, tasty-hunit, tasty-quickcheck, text - , unordered-containers, xeno, xmlbf + ({ mkDerivation, base, bytestring, criterion, deepseq, ghc-prim + , html-entities, tasty, tasty-hunit, text, unordered-containers + , xeno, xml, xmlbf }: mkDerivation { pname = "xmlbf-xeno"; - version = "0.2"; - sha256 = "1x33885kjddmc39p2jxafypcgpm5fajdxzdd6l9z5bpihlpgk7ig"; + version = "0.2.2"; + sha256 = "1ls45fqyvss387mcz5gppnal9pf4kmnqd8dzr6caaxzdd5ckxi3h"; libraryHaskellDepends = [ base bytestring html-entities text unordered-containers xeno xmlbf ]; - testHaskellDepends = [ - base bytestring QuickCheck quickcheck-instances tasty tasty-hunit - tasty-quickcheck text unordered-containers xmlbf + testHaskellDepends = [ base tasty tasty-hunit xmlbf ]; + benchmarkHaskellDepends = [ + base bytestring criterion deepseq ghc-prim xml ]; description = "xeno backend support for the xmlbf library"; license = lib.licenses.asl20; }) {}; "xmlbf-xmlhtml" = callPackage - ({ mkDerivation, base, bytestring, html-entities, QuickCheck - , quickcheck-instances, tasty, tasty-hunit, tasty-quickcheck, text - , unordered-containers, xmlbf, xmlhtml + ({ mkDerivation, base, bytestring, html-entities, tasty + , tasty-hunit, text, unordered-containers, xmlbf, xmlhtml }: mkDerivation { pname = "xmlbf-xmlhtml"; - version = "0.2"; - sha256 = "1h2w98jdr3r9isbl5g39gd3fxlm4vqib15grqgarhx2gj1k9vlxd"; + version = "0.2.2"; + sha256 = "0d93ywr70qmjd2yd33b5k8b5n1l01cj1clbm93hq6sfjjnw4cyi0"; libraryHaskellDepends = [ base bytestring html-entities text unordered-containers xmlbf xmlhtml ]; - testHaskellDepends = [ - base bytestring QuickCheck quickcheck-instances tasty tasty-hunit - tasty-quickcheck text unordered-containers xmlbf - ]; + testHaskellDepends = [ base tasty tasty-hunit xmlbf ]; description = "xmlhtml backend support for the xmlbf library"; license = lib.licenses.asl20; }) {}; @@ -312395,10 +311508,8 @@ self: { }: mkDerivation { pname = "xmlhtml"; - version = "0.2.5.2"; - sha256 = "1p2v1cj9jjwbqyb0fyv2201zd7ljz5d46qg5kwy7rz2bchbqd0b4"; - revision = "4"; - editedCabalFile = "1q4f9pvyrkrw793kvd1lxzpzf49h2rs8zdmmhsli487sllflghnq"; + version = "0.2.5.3"; + sha256 = "0nvwrl4cw7hfsbndmxdmzs3cs35hs01bja6hrjrc8fairaaif2rf"; libraryHaskellDepends = [ base blaze-builder blaze-html blaze-markup bytestring bytestring-builder containers parsec text unordered-containers @@ -312543,7 +311654,10 @@ self: { description = "A tiling window manager"; license = lib.licenses.bsd3; mainProgram = "xmonad"; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ + lib.maintainers.dschrempf lib.maintainers.ivanbrennan + lib.maintainers.peti + ]; }) {}; "xmonad-bluetilebranch" = callPackage @@ -312589,7 +311703,10 @@ self: { ]; description = "Community-maintained extensions for xmonad"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.peti ]; + maintainers = [ + lib.maintainers.dschrempf lib.maintainers.ivanbrennan + lib.maintainers.peti + ]; }) {}; "xmonad-contrib-bluetilebranch" = callPackage @@ -312985,7 +312102,6 @@ self: { description = "Data types for programs for xournal file format"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "xpathdsv" = callPackage @@ -313041,7 +312157,6 @@ self: { license = lib.licenses.mpl20; hydraPlatforms = lib.platforms.none; mainProgram = "xrefcheck"; - broken = true; }) {}; "xsact" = callPackage @@ -313089,6 +312204,8 @@ self: { libraryHaskellDepends = [ base HUnit QuickCheck uniplate vector ]; description = "cryptanalysis of Blizzard's broken SHA-1 implementation"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "xslt" = callPackage @@ -313111,10 +312228,8 @@ self: { }: mkDerivation { pname = "xss-sanitize"; - version = "0.3.7"; - sha256 = "1wnzx5nv8p4ppphcvjp6x8wna0kpw9jn85gn1qbhjqhrl5nqy1vw"; - revision = "1"; - editedCabalFile = "15kd3yxs219g4rxnq7qlr2zhjv930b33aynq0nbzhw94bff6qb66"; + version = "0.3.7.1"; + sha256 = "1lmmyh28mb1k44m63m7qx6iy4x2fgqq5srmky47dsm0fby9iag1h"; libraryHaskellDepends = [ attoparsec base containers css-text network-uri tagsoup text utf8-string @@ -313158,8 +312273,6 @@ self: { ]; description = "Automatic generation of XStaticFile"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "xtc" = callPackage @@ -313200,8 +312313,6 @@ self: { ]; description = "turtle like LOGO"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "xxhash" = callPackage @@ -313219,6 +312330,8 @@ self: { ]; description = "A Haskell implementation of the xxHash algorithm"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "xxhash-ffi" = callPackage @@ -313965,8 +313078,6 @@ self: { ]; description = "Flexible declarative YAML parsing toolkit"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "yaml2owl" = callPackage @@ -314033,8 +313144,8 @@ self: { pname = "yampa-canvas"; version = "0.2.3"; sha256 = "0a1pq1psmc4490isr19z4prnqq1w3374vkfmzpw9s20s2p6k5y7r"; - revision = "8"; - editedCabalFile = "1lnvj9fgwb11my92sk1k0kws3aan6d9r2airpfviv5b9bb0ylpqm"; + revision = "9"; + editedCabalFile = "0cl5bnki5a5dfr6jv5957c7svvgnvgf5zr6c6adha639z98l1fmq"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base blank-canvas stm time Yampa ]; @@ -314122,8 +313233,8 @@ self: { }: mkDerivation { pname = "yampa-test"; - version = "0.13.7"; - sha256 = "04i1rzbc8v60s1qdnz42g8anm2xc6w28i47jkakqlpxlcii3zlcy"; + version = "0.14"; + sha256 = "1w2p15j1fh2xv460xc40w7li2mvv4nwqqys1xhr9zpby2cdkc39h"; libraryHaskellDepends = [ base normaldistribution QuickCheck Yampa ]; @@ -314237,8 +313348,6 @@ self: { benchmarkHaskellDepends = [ base criterion deepseq ]; description = "Yet another records libraries"; license = lib.licenses.isc; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "yarn-lock" = callPackage @@ -314296,7 +313405,9 @@ self: { ]; description = "Convert yarn.lock files to nix expressions"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; maintainers = [ lib.maintainers.sternenseemann ]; + broken = true; }) {}; "yarr" = callPackage @@ -314350,7 +313461,6 @@ self: { description = "Yet another string interpolator"; license = lib.licenses.cc0; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "yate" = callPackage @@ -315060,25 +314170,35 @@ self: { "yesod-auth-lti13" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, base64-bytestring - , bytestring, containers, cryptonite, http-client, http-conduit - , jose-jwt, load-env, lti13, microlens, oidc-client - , safe-exceptions, text, time, warp, yesod, yesod-auth, yesod-core + , bytestring, containers, cryptonite, data-default, file-embed + , hspec, hspec-discover, http-client, http-conduit, http-types + , jose-jwt, load-env, lti13, microlens, mtl, oidc-client + , QuickCheck, template-haskell, text, th-utilities, time + , transformers, unliftio, wai, warp, yesod, yesod-auth, yesod-core + , yesod-test }: mkDerivation { pname = "yesod-auth-lti13"; - version = "0.2.0.3"; - sha256 = "06xlpdirr7s4l9a9sxydn7vj0z9dy600yn6nmccv042awkdg5l0f"; + version = "0.3.0.0"; + sha256 = "1mi8fvynayw1wf17mrk11vdisi7r585bf8v0d73x7yq3f1b43qfa"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson aeson-pretty base base64-bytestring bytestring containers - cryptonite http-client http-conduit jose-jwt load-env lti13 - microlens oidc-client safe-exceptions text time warp yesod + cryptonite http-client http-conduit http-types jose-jwt load-env + lti13 microlens oidc-client text time unliftio warp yesod yesod-auth yesod-core ]; + testHaskellDepends = [ + aeson aeson-pretty base base64-bytestring bytestring containers + cryptonite data-default file-embed hspec http-client http-conduit + http-types jose-jwt load-env lti13 microlens mtl oidc-client + QuickCheck template-haskell text th-utilities time transformers + unliftio wai warp yesod yesod-auth yesod-core yesod-test + ]; + testToolDepends = [ hspec-discover ]; description = "A yesod-auth plugin for LTI 1.3"; license = lib.licenses.lgpl3Only; - hydraPlatforms = lib.platforms.none; }) {}; "yesod-auth-nopassword" = callPackage @@ -315105,16 +314225,14 @@ self: { }: mkDerivation { pname = "yesod-auth-oauth"; - version = "1.6.0.3"; - sha256 = "0y57d5y0l0fzmk6zxrpf2xf8y00hp2i0lk3xh5sqlb77a57r109s"; + version = "1.6.1"; + sha256 = "0gyjcrm8yhqd2zripv050p0jnlxl88czbqar2crr4gxq8na5pn20"; libraryHaskellDepends = [ authenticate-oauth base bytestring text unliftio yesod-auth yesod-core yesod-form ]; description = "OAuth Authentication for Yesod"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "yesod-auth-oauth2" = callPackage @@ -316088,6 +315206,8 @@ self: { ]; description = "A middleware for building CSP headers on the fly"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "yesod-newsfeed" = callPackage @@ -317062,7 +316182,6 @@ self: { description = "Yi editor core library"; license = lib.licenses.gpl2Only; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "yi-dynamic-configuration" = callPackage @@ -317091,6 +316210,7 @@ self: { libraryHaskellDepends = [ base containers split yi-language ]; description = "Simple mapping from colour names used in emacs to Color"; license = lib.licenses.gpl2Only; + hydraPlatforms = lib.platforms.none; }) {}; "yi-frontend-pango" = callPackage @@ -317268,6 +316388,8 @@ self: { ]; description = "Collection of language-related Yi libraries"; license = lib.licenses.gpl2Only; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "yi-misc-modes" = callPackage @@ -317567,6 +316689,8 @@ self: { libraryHaskellDepends = [ base free mtl ]; description = "A truly tiny monadic parsing library"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "yoda" = callPackage @@ -317639,6 +316763,8 @@ self: { executableHaskellDepends = [ base bytestring process utility-ht ]; description = "Upload video to YouTube via YouTube API"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "yql" = callPackage @@ -318030,8 +317156,8 @@ self: { }: mkDerivation { pname = "zenacy-html"; - version = "2.0.4"; - sha256 = "05jy3w7a94ns52w4a1p6xhcph09p2zzqmvncf47db9wwq6xl5ad2"; + version = "2.0.7"; + sha256 = "1468haqjgmnh6drf5cfk42v0x80pr3a9asap8l6m1l4pwy531wkh"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -318062,8 +317188,8 @@ self: { }: mkDerivation { pname = "zenacy-unicode"; - version = "1.0.1"; - sha256 = "1l03zr1j6h1h15rnz6mk731g5ib1h3x59b3aqm30i0kd2h28g0vw"; + version = "1.0.2"; + sha256 = "0v9zsiqm07gmyqa3c3caak2lfi8z499xmj0xa3lyx8s2nd6aficn"; libraryHaskellDepends = [ base bytestring vector word8 ]; testHaskellDepends = [ base bytestring HUnit test-framework test-framework-hunit text @@ -318212,8 +317338,8 @@ self: { }: mkDerivation { pname = "zephyr-copilot"; - version = "1.0.4"; - sha256 = "112xjv3lmnnxi6imwj9p0i2nn0gbc6dgai0yq8kc6iy1qpg478w5"; + version = "1.0.5"; + sha256 = "1fc58cq0dgzqfy84z8mbana8lisnc2df7k7jhramafpl7qgkp9q4"; libraryHaskellDepends = [ base containers copilot copilot-c99 copilot-language directory filepath mtl optparse-applicative sketch-frp-copilot temporary @@ -318233,6 +317359,8 @@ self: { libraryHaskellDepends = [ base semigroups ]; description = "Semigroups with absorption"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "zerobin" = callPackage @@ -318254,6 +317382,7 @@ self: { ]; description = "Post to 0bin services"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "zerobin"; }) {}; @@ -318315,6 +317444,7 @@ self: { description = "Bindings to ZeroMQ 3.x"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) zeromq;}; "zeromq4-clone-pattern" = callPackage @@ -318703,8 +317833,8 @@ self: { pname = "zip"; version = "1.7.2"; sha256 = "1c5pr3hv11dpn4ybd4742qkpqmvb9l3l7xmzlsf65wm2p8071dvj"; - revision = "2"; - editedCabalFile = "0gacj2fp0yg45l5vxby0n03lza91zfykk74p6a2r3abrfmvw7kq8"; + revision = "3"; + editedCabalFile = "0q72y8qsz1y01rlmi3chdb0p06qng7ffzv0ylmiqqn36f9qjl405"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -318747,6 +317877,27 @@ self: { license = lib.licenses.bsd3; }) {inherit (pkgs) which;}; + "zip-cmd" = callPackage + ({ mkDerivation, base, bytestring, filepath, optparse-applicative + , shellwords, text, time, zip + }: + mkDerivation { + pname = "zip-cmd"; + version = "1.0.1"; + sha256 = "18jhhzhbr4bh14b5kw7f2bxwrcnq0590v25f81wrqkvmbb2mzwmz"; + revision = "1"; + editedCabalFile = "0f2k4xxvpzf33bn6nab3fqimkc2gaywl8hbadnhavlbyrg5fdhpn"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base bytestring filepath optparse-applicative shellwords text time + zip + ]; + description = "Simple CLI tool for the haskell zip library"; + license = lib.licenses.bsd3; + mainProgram = "zip-cmd"; + }) {}; + "zip-conduit" = callPackage ({ mkDerivation, base, bytestring, cereal, conduit, conduit-extra , digest, directory, filepath, hpc, HUnit, mtl, old-time, resourcet @@ -318773,24 +317924,26 @@ self: { "zip-stream" = callPackage ({ mkDerivation, base, binary, binary-conduit, bytestring, conduit - , conduit-extra, digest, directory, exceptions, filepath, mtl - , primitive, resourcet, text, time, transformers, transformers-base - , zlib + , conduit-extra, deepseq, digest, directory, exceptions, filepath + , hspec, mtl, primitive, resourcet, text, time, transformers + , transformers-base, zlib }: mkDerivation { pname = "zip-stream"; - version = "0.2.1.0"; - sha256 = "0fx8kj0ijm3555grhdns7agmi084584fh1v0mvkm4x696h1zzvli"; + version = "0.2.2.0"; + sha256 = "1z9q6j5zh4crvgk4v2p9s6qww74ifmcj7ngxxkpnkv8h81xjcdjk"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base binary binary-conduit bytestring conduit conduit-extra digest - exceptions mtl primitive resourcet text time transformers-base zlib + base binary binary-conduit bytestring conduit conduit-extra deepseq + digest exceptions mtl primitive resourcet text time + transformers-base zlib ]; executableHaskellDepends = [ base bytestring conduit conduit-extra directory filepath resourcet text time transformers ]; + testHaskellDepends = [ base bytestring conduit hspec text time ]; description = "ZIP archive streaming using conduits"; license = lib.licenses.bsd3; }) {}; @@ -319010,6 +318163,8 @@ self: { libraryHaskellDepends = [ base bytestring profunctors zlib ]; description = "Lenses for zlib"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "zm" = callPackage @@ -319033,7 +318188,6 @@ self: { description = "Language independent, reproducible, absolute types"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "zmcat" = callPackage @@ -319226,8 +318380,8 @@ self: { }: mkDerivation { pname = "zoovisitor"; - version = "0.2.1.0"; - sha256 = "1vh20sjq305f7nkphprqby19cbd7w395yixq92w3mplsz9cx6h0n"; + version = "0.2.1.1"; + sha256 = "02hhscjj1rql1xn08x1dh5lppsvrs059wh2psxz5i2glwc7jgd9a"; libraryHaskellDepends = [ base Z-Data Z-IO ]; librarySystemDepends = [ zookeeper_mt ]; testHaskellDepends = [ async base hspec uuid Z-Data ]; @@ -319459,7 +318613,9 @@ self: { testHaskellDepends = [ aeson base bytestring tasty tasty-hunit ]; description = "A zuul client library"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; mainProgram = "zuul-cli"; + broken = true; }) {}; "zxcvbn-c" = callPackage diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/lib/compose.nix b/third_party/nixpkgs/pkgs/development/haskell-modules/lib/compose.nix index 5f7e127c0b..6d0e91e333 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/lib/compose.nix +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/lib/compose.nix @@ -355,7 +355,7 @@ rec { */ triggerRebuild = i: overrideCabal (drv: { postUnpack = ": trigger rebuild ${toString i}"; }); - /* Override the sources for the package and optionaly the version. + /* Override the sources for the package and optionally the version. This also takes of removing editedCabalFile. */ overrideSrc = { src, version ? null }: drv: diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/lib/default.nix b/third_party/nixpkgs/pkgs/development/haskell-modules/lib/default.nix index 581e9aa101..ffd9ac0578 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/lib/default.nix +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/lib/default.nix @@ -279,7 +279,7 @@ rec { */ triggerRebuild = drv: i: compose.triggerRebuild i drv; - /* Override the sources for the package and optionaly the version. + /* Override the sources for the package and optionally the version. This also takes of removing editedCabalFile. */ overrideSrc = drv: src: compose.overrideSrc src drv; diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/make-package-set.nix b/third_party/nixpkgs/pkgs/development/haskell-modules/make-package-set.nix index 3dd0194862..5b9546e750 100644 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/make-package-set.nix +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/make-package-set.nix @@ -33,7 +33,7 @@ # `self` as second, and returns a set of haskell packages package-set -, # The final, fully overriden package set usable with the nixpkgs fixpoint +, # The final, fully overridden package set usable with the nixpkgs fixpoint # overriding functionality extensible-self }: @@ -73,7 +73,7 @@ let mkDerivation = makeOverridable mkDerivationImpl; - # manualArgs are the arguments that were explictly passed to `callPackage`, like: + # manualArgs are the arguments that were explicitly passed to `callPackage`, like: # # callPackage foo { bar = null; }; # @@ -93,8 +93,9 @@ let # Converts a returned function to a functor attribute set if necessary ensureAttrs = v: if builtins.isFunction v then { __functor = _: v; } else v; - # this wraps the `drv` function to add a `overrideScope` function to the result. + # this wraps the `drv` function to add `scope` and `overrideScope` to the result. drvScope = allArgs: ensureAttrs (drv allArgs) // { + inherit scope; overrideScope = f: let newScope = mkScope (fix' (extends f scope.__unfix__)); # note that we have to be careful here: `allArgs` includes the auto-arguments that diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/patches/cachix.patch b/third_party/nixpkgs/pkgs/development/haskell-modules/patches/cachix.patch deleted file mode 100755 index 21f1496933..0000000000 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/patches/cachix.patch +++ /dev/null @@ -1,10 +0,0 @@ ---- a/src/Cachix/Client/OptionsParser.hs -+++ b/src/Cachix/Client/OptionsParser.hs -@@ -15,7 +15,7 @@ - import qualified Cachix.Client.URI as URI - import qualified Cachix.Deploy.OptionsParser as DeployOptions - import Options.Applicative --import Protolude hiding (toS) -+import Protolude hiding (option, toS) - import Protolude.Conv - import qualified URI.ByteString as URI diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/patches/haskell-ci-optparse-applicative-0.17-ShellCheck-0.8.patch b/third_party/nixpkgs/pkgs/development/haskell-modules/patches/haskell-ci-optparse-applicative-0.17-ShellCheck-0.8.patch new file mode 100644 index 0000000000..c1e1663627 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/patches/haskell-ci-optparse-applicative-0.17-ShellCheck-0.8.patch @@ -0,0 +1,54 @@ +From 0cc6f0f8de1776d0b5851459d22a0997dfd735ce Mon Sep 17 00:00:00 2001 +From: Oleg Grenrus +Date: Wed, 25 May 2022 14:09:49 +0300 +Subject: [PATCH] Use ShellCheck-0.8.0 and optparse-applicative-0.17 + +Adapted from 0cc6f0f8de1776d0b5851459d22a0997dfd735ce to apply on top of +haskell-ci-0.14.3. + +Co-Authored-By: sternenseemann + +--- + haskell-ci.cabal | 4 ++-- + src/HaskellCI/GitHub.hs | 7 ++++--- + 2 files changed, 7 insertions(+), 6 deletions(-) + +diff --git a/haskell-ci.cabal b/haskell-ci.cabal +index 273bd422..6848402c 100644 +--- a/haskell-ci.cabal ++++ b/haskell-ci.cabal +@@ -167,14 +167,14 @@ library haskell-ci-internal + , ini ^>=0.4.1 + , lattices ^>=2 + , network-uri ^>=2.6.1.0 +- , optparse-applicative ^>=0.16.1.0 ++ , optparse-applicative ^>=0.17.0.0 + , temporary ^>=1.3 + , unordered-containers ^>=0.2.10.0 + , zinza ^>=0.2 + + -- ShellCheck. Would need newer transformers for older GHC + if flag(shellcheck) +- build-depends: ShellCheck ==0.7.2 ++ build-depends: ShellCheck ==0.8.0 + + executable haskell-ci + main-is: Main.hs +diff --git a/src/HaskellCI/GitHub.hs b/src/HaskellCI/GitHub.hs +index f1a402e6..a2c6e4f6 100644 +--- a/src/HaskellCI/GitHub.hs ++++ b/src/HaskellCI/GitHub.hs +@@ -653,9 +653,10 @@ makeGitHub _argv config@Config {..} gitconfig prj jobs@JobVersions {..} = do + setup hvrppa ghcup + | allGHCUP = traverse_ liftSh ghcup + | not anyGHCUP = traverse_ liftSh hvrppa +- -- 2192: ${{ ...}} will match (ShellCheck think it doesn't) +- -- 2129: individual redirects +- | otherwise = sh' [2193, 2129] $ unlines $ ++ -- SC2192: ${{ ...}} will match (ShellCheck think it doesn't) ++ -- SC2129: individual redirects ++ -- SC2296: Parameter expansions can't start with {. Double check syntax. -- ${{ }} in YAML templating. ++ | otherwise = sh' [2193, 2129, 2296] $ unlines $ + [ "if [ \"${{ matrix.setup-method }}\" = ghcup ]; then" + ] ++ + [ " " ++ shToString s diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/patches/lambdabot-core-ghc9.patch b/third_party/nixpkgs/pkgs/development/haskell-modules/patches/lambdabot-core-ghc9.patch deleted file mode 100644 index 87a112b821..0000000000 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/patches/lambdabot-core-ghc9.patch +++ /dev/null @@ -1,95 +0,0 @@ -diff --git a/lambdabot-core.cabal b/lambdabot-core.cabal -index 861a28b..87175a3 100644 ---- a/lambdabot-core.cabal -+++ b/lambdabot-core.cabal -@@ -19,7 +19,7 @@ homepage: https://wiki.haskell.org/Lambdabot - - build-type: Simple - cabal-version: >= 1.10 --tested-with: GHC == 8.2.2, GHC == 8.4.4, GHC == 8.6.5, GHC == 8.8.4, GHC == 8.10.4 -+tested-with: GHC == 8.2.2, GHC == 8.4.4, GHC == 8.6.5, GHC == 8.8.4, GHC == 8.10.4, GHC == 9.0.2 - - extra-source-files: AUTHORS.md - COMMENTARY.md -@@ -89,9 +89,8 @@ library - network-bsd >= 2.7 && < 2.9, - parsec >= 3, - prim-uniq >= 0.2 && < 0.4, -- random >= 1, -- random-fu >= 0.2.6.2, -- random-source >= 0.3, -+ random >= 1.2, -+ random-fu >= 0.3.0.0, - regex-tdfa >= 1.1 && < 1.4, - SafeSemaphore >= 0.9, - split >= 0.2, -diff --git a/src/Lambdabot/Bot.hs b/src/Lambdabot/Bot.hs -index 1b0de2e..833fb4c 100644 ---- a/src/Lambdabot/Bot.hs -+++ b/src/Lambdabot/Bot.hs -@@ -1,6 +1,5 @@ - {-# LANGUAGE GADTs #-} - {-# LANGUAGE ScopedTypeVariables #-} --{-# LANGUAGE TemplateHaskell #-} - -- | The guts of lambdabot. - -- - -- The LB/Lambdabot monad -@@ -37,7 +36,6 @@ import Control.Monad.Error - import Control.Monad.Reader - import Control.Monad.State - import qualified Data.Map as M --import Data.Random.Source - import qualified Data.Set as S - - ------------------------------------------------------------------------ -@@ -136,17 +134,3 @@ ircPrivmsg who msg = do - ircPrivmsg' :: Nick -> String -> LB () - ircPrivmsg' who "" = ircPrivmsg' who " " - ircPrivmsg' who msg = send $ privmsg who msg -- -------------------------------------------------------------------------- -- --monadRandom [d| -- -- instance MonadRandom LB where -- getRandomWord8 = liftIO getRandomWord8 -- getRandomWord16 = liftIO getRandomWord16 -- getRandomWord32 = liftIO getRandomWord32 -- getRandomWord64 = liftIO getRandomWord64 -- getRandomDouble = liftIO getRandomDouble -- getRandomNByteInteger n = liftIO (getRandomNByteInteger n) -- -- |] -diff --git a/src/Lambdabot/Util.hs b/src/Lambdabot/Util.hs -index effdf71..259699b 100644 ---- a/src/Lambdabot/Util.hs -+++ b/src/Lambdabot/Util.hs -@@ -23,14 +23,15 @@ module Lambdabot.Util ( - randomSuccessMsg - ) where - -+import Control.Concurrent.Lifted - import Control.Monad.Trans -+import Control.Monad.Trans.Control - import Data.Char - import Data.List - import Data.Random --import Control.Concurrent.Lifted --import Control.Monad.Trans.Control - import Lambdabot.Config - import Lambdabot.Config.Core -+import System.Random.Stateful (newIOGenM, newStdGen) - - ------------------------------------------------------------------------ - -@@ -63,7 +64,9 @@ listToStr conj (item:items) = - - -- | Pick a random element of the list. - random :: MonadIO m => [a] -> m a --random = io . sample . randomElement -+random l = do -+ g <- newIOGenM =<< newStdGen -+ sampleFrom g (randomElement l) - - ------------------------------------------------------------------------ - diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/patches/lambdabot-novelty-plugins-ghc9.patch b/third_party/nixpkgs/pkgs/development/haskell-modules/patches/lambdabot-novelty-plugins-ghc9.patch deleted file mode 100644 index 009951f90e..0000000000 --- a/third_party/nixpkgs/pkgs/development/haskell-modules/patches/lambdabot-novelty-plugins-ghc9.patch +++ /dev/null @@ -1,58 +0,0 @@ -diff --git a/lambdabot-novelty-plugins.cabal b/lambdabot-novelty-plugins.cabal -index 69c8447..50a35f6 100644 ---- a/lambdabot-novelty-plugins.cabal -+++ b/lambdabot-novelty-plugins.cabal -@@ -36,7 +36,7 @@ homepage: https://wiki.haskell.org/Lambdabot - - build-type: Simple - cabal-version: >= 1.10 --tested-with: GHC == 8.2.2, GHC == 8.4.4, GHC == 8.6.5, GHC == 8.8.4, GHC == 8.10.4 -+tested-with: GHC == 8.2.2, GHC == 8.4.4, GHC == 8.6.5, GHC == 8.8.4, GHC == 8.10.4, GHC == 9.0.2 - - source-repository head - type: git -@@ -71,7 +71,8 @@ library - lambdabot-core >= 5.3 && < 5.4, - misfortune >= 0.1, - process >= 1.1, -- random-fu >= 0.2.6.2, -+ random >= 1.2, -+ random-fu >= 0.3.0.0, - regex-tdfa >= 1.1, - - -- runtime dependencies -diff --git a/src/Lambdabot/Plugin/Novelty/Numberwang.hs b/src/Lambdabot/Plugin/Novelty/Numberwang.hs -index ae41eb4..8321a14 100644 ---- a/src/Lambdabot/Plugin/Novelty/Numberwang.hs -+++ b/src/Lambdabot/Plugin/Novelty/Numberwang.hs -@@ -7,7 +7,9 @@ import Control.Monad - import Data.Random - import Data.Random.Distribution.Poisson - import Lambdabot.Plugin -+import Lambdabot.Util - import Numeric -+import System.Random.Stateful (newIOGenM, newStdGen) - - - data NumberwangState = State -@@ -23,7 +25,9 @@ conDist = poisson (32 :: Double) - - numberwangPlugin :: Module NumberwangState - numberwangPlugin = newModule -- { moduleDefState = sample (State <$> cmdDist <*> conDist) -+ { moduleDefState = do -+ g <- newIOGenM =<< newStdGen -+ sampleFrom g (State <$> cmdDist <*> conDist) - , moduleCmds = return - [ (command "numberwang") - { help = say "@numberwang : Determines if it is Numberwang." -@@ -61,7 +65,8 @@ checkNumberwang :: (MonadLBState m, LBState m ~ NumberwangState) => - checkNumberwang cmd l = withState cmd $ \ n setN nDist -> do - if n <= l - then do -- setN =<< lb (sample nDist) -+ g <- newIOGenM =<< newStdGen -+ setN =<< sampleFrom g nDist - return True - else do - setN (n - l) diff --git a/third_party/nixpkgs/pkgs/development/haskell-modules/patches/mbox-time-1.10.patch b/third_party/nixpkgs/pkgs/development/haskell-modules/patches/mbox-time-1.10.patch new file mode 100644 index 0000000000..f72b8483b3 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/haskell-modules/patches/mbox-time-1.10.patch @@ -0,0 +1,52 @@ +diff -rN -u old-mbox/Data/MBox/String.hs new-mbox/Data/MBox/String.hs +--- old-mbox/Data/MBox/String.hs 2022-11-22 19:14:52.332543098 +0100 ++++ new-mbox/Data/MBox/String.hs 2022-11-22 19:14:52.332543098 +0100 +@@ -1,3 +1,4 @@ ++{-# LANGUAGE CPP #-} + + ----------------------------------------------------------------------------- + {- | +@@ -31,7 +32,11 @@ + -- | Reads a date header as a UTCTime + parseDateHeader :: String -> Maybe UTCTime + parseDateHeader header = listToMaybe . catMaybes $ map tryParse formats where ++#if MIN_VERSION_time(1,9,0) ++ tryParse f = parseTimeM True LC.defaultTimeLocale f header ++#else + tryParse f = parseTime LC.defaultTimeLocale f header ++#endif + formats = + [ "%a, %_d %b %Y %T %z" + , "%a, %_d %b %Y %T %Z" +diff -rN -u old-mbox/Data/MBox.hs new-mbox/Data/MBox.hs +--- old-mbox/Data/MBox.hs 2022-11-22 19:14:52.332543098 +0100 ++++ new-mbox/Data/MBox.hs 2022-11-22 19:14:52.332543098 +0100 +@@ -1,3 +1,4 @@ ++{-# LANGUAGE CPP #-} + {-# LANGUAGE ViewPatterns #-} + + ----------------------------------------------------------------------------- +@@ -34,7 +35,11 @@ + parseDateHeader :: T.Text -> Maybe UTCTime + parseDateHeader txt = listToMaybe . catMaybes $ map tryParse formats where + header = T.unpack txt ++#if MIN_VERSION_time(1,9,0) ++ tryParse f = parseTimeM True LC.defaultTimeLocale f header ++#else + tryParse f = parseTime LC.defaultTimeLocale f header ++#endif + formats = + [ "%a, %_d %b %Y %T %z" + , "%a, %_d %b %Y %T %Z" +diff -rN -u old-mbox/mbox.cabal new-mbox/mbox.cabal +--- old-mbox/mbox.cabal 2022-11-22 19:14:52.332543098 +0100 ++++ new-mbox/mbox.cabal 2022-11-22 19:14:52.332543098 +0100 +@@ -13,7 +13,7 @@ + Cabal-Version: >= 1.6 + + library +- build-depends: base >= 4, base < 6, safe, time < 1.9, time-locale-compat, text ++ build-depends: base >= 4, base < 6, safe, time, time-locale-compat, text + exposed-modules: Data.MBox, Data.MBox.String + ghc-options: -Wall + diff --git a/third_party/nixpkgs/pkgs/development/interpreters/bqn/cbqn/default.nix b/third_party/nixpkgs/pkgs/development/interpreters/bqn/cbqn/default.nix index 1766c45995..6e4c18c961 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/bqn/cbqn/default.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/bqn/cbqn/default.nix @@ -4,11 +4,13 @@ , genBytecode ? false , bqn-path ? null , mbqn-source ? null +, enableReplxx ? false , libffi , pkg-config }: let + # TODO: these submodules should be separated libraries cbqn-bytecode-files = fetchFromGitHub { name = "cbqn-bytecode-files"; owner = "dzaima"; @@ -16,6 +18,13 @@ let rev = "3df8ae563a626ff7ae0683643092f0c3bc2481e5"; hash = "sha256:0rh9qp1bdm9aa77l0kn9n4jdy08gl6l7898lncskxiq9id6xvyb8"; }; + replxx-submodule = fetchFromGitHub { + name = "replxx-submodule"; + owner = "dzaima"; + repo = "replxx"; + rev = "ba94c293caad52486df8712e808783df9a8f4501"; + hash = "sha256-pMLvURksj/5k5b6BTwWxjomoROMOE5+GRjyaoqu/iYE="; + }; in assert genBytecode -> ((bqn-path != null) && (mbqn-source != null)); @@ -26,8 +35,8 @@ stdenv.mkDerivation rec { src = fetchFromGitHub { owner = "dzaima"; repo = "CBQN"; - rev = "dbc7c83f7085d05e87721bedf1ee38931f671a8e"; - hash = "sha256:0nal1fs9y7nyx4d5q1qw868lxk7mivzw2y16wc3hw97pq4qf0dpb"; + rev = "49c0d9a355698f54fff2c0caa177e2b341fabb45"; + hash = "sha256-jm2ZzFxhr9o4nFR2rjYJz/4GH+WFnfU4QDovrOPI3jQ="; }; nativeBuildInputs = [ @@ -47,7 +56,8 @@ stdenv.mkDerivation rec { makeFlags = [ "CC=${stdenv.cc.targetPrefix}cc" - ]; + ] + ++ lib.optional enableReplxx "REPLXX=1"; preBuild = '' # Purity: avoids git downloading bytecode files @@ -56,7 +66,15 @@ stdenv.mkDerivation rec { ${bqn-path} ./build/genRuntime ${mbqn-source} build/bytecodeLocal/ '' else '' cp ${cbqn-bytecode-files}/src/gen/{compiles,explain,formatter,runtime0,runtime1,src} build/bytecodeLocal/gen/ - ''); + '') + + lib.optionalString enableReplxx '' + cp -r ${replxx-submodule} build/replxxLocal/ + '' + # Need to adjust ld flags for darwin manually + # https://github.com/dzaima/CBQN/issues/26 + + lib.optionalString stdenv.hostPlatform.isDarwin '' + makeFlagsArray+=(LD_LIBS="-ldl -lffi") + ''; installPhase = '' runHook preInstall diff --git a/third_party/nixpkgs/pkgs/development/interpreters/clojure/babashka.nix b/third_party/nixpkgs/pkgs/development/interpreters/clojure/babashka.nix index 1a1f40e3f9..be9ddd9d0b 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/clojure/babashka.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/clojure/babashka.nix @@ -30,7 +30,7 @@ buildGraalvmNativeImage rec { set -euo pipefail readonly latest_version="$(curl \ - ''${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} \ + ''${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} \ -s "https://api.github.com/repos/babashka/babashka/releases/latest" \ | jq -r '.tag_name')" diff --git a/third_party/nixpkgs/pkgs/development/interpreters/clojure/default.nix b/third_party/nixpkgs/pkgs/development/interpreters/clojure/default.nix index 406c5bc15a..95b7d611fa 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/clojure/default.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/clojure/default.nix @@ -64,7 +64,7 @@ stdenv.mkDerivation rec { # `jq -r '.[0].name'` results in `v0.0` readonly latest_version="$(curl \ - ''${GITHUB_TOKEN:+"-u \":$GITHUB_TOKEN\""} \ + ''${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} \ -s "https://api.github.com/repos/clojure/brew-install/tags" \ | jq -r '.[1].name')" diff --git a/third_party/nixpkgs/pkgs/development/interpreters/erlang/R23.nix b/third_party/nixpkgs/pkgs/development/interpreters/erlang/R23.nix index af767bf9f4..89faebdde1 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/erlang/R23.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/erlang/R23.nix @@ -1,6 +1,6 @@ { mkDerivation }: mkDerivation { - version = "23.3.4.17"; - sha256 = "sha256-GJicQqQbtD/eG/1t9C/l3hVsRV8fJOgaSCU0/kSHZLY="; + version = "23.3.4.18"; + sha256 = "sha256-sxNVu/52kOMFKQYPLi5uXnR1mYTF2KlHUo4T7kh0KoY="; } diff --git a/third_party/nixpkgs/pkgs/development/interpreters/erlang/R24.nix b/third_party/nixpkgs/pkgs/development/interpreters/erlang/R24.nix index 2dea38b77d..2f1a548c88 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/erlang/R24.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/erlang/R24.nix @@ -1,6 +1,6 @@ { mkDerivation }: mkDerivation { - version = "24.3.4.5"; - sha256 = "sha256-MGmuge79Dh/HXF+tkvubM979K0At5v1B1RhM5Koy8oY="; + version = "24.3.4.7"; + sha256 = "sha256-cOtoSlK3S2irPX8vQ81rPXBH3aWriyoUmidUyaFs11E="; } diff --git a/third_party/nixpkgs/pkgs/development/interpreters/erlang/R25.nix b/third_party/nixpkgs/pkgs/development/interpreters/erlang/R25.nix index 885dd13efe..0f2dff14fc 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/erlang/R25.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/erlang/R25.nix @@ -1,6 +1,6 @@ { mkDerivation }: mkDerivation { - version = "25.1.2"; - sha256 = "0fn6zyqrgyiznyghkhygak524f3clc3kz91rarq8cqn3r920dmg9"; + version = "25.2"; + sha256 = "zZ6i0NIftTcjzB5J51Q16GmVPlc5gPnGfo6EoBT2HY0="; } diff --git a/third_party/nixpkgs/pkgs/development/interpreters/lua-5/build-lua-package.nix b/third_party/nixpkgs/pkgs/development/interpreters/lua-5/build-lua-package.nix index d11c0d0f03..a15a12dd28 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/lua-5/build-lua-package.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/lua-5/build-lua-package.nix @@ -14,7 +14,7 @@ , rockspecVersion ? version # by default prefix `name` e.g. "lua5.2-${name}" -, namePrefix ? "${lua.pname}${lua.sourceVersion.major}.${lua.sourceVersion.minor}-" +, namePrefix ? "${lua.pname}${lib.versions.majorMinor version}-" # Dependencies for building the package , buildInputs ? [] diff --git a/third_party/nixpkgs/pkgs/development/interpreters/lua-5/default.nix b/third_party/nixpkgs/pkgs/development/interpreters/lua-5/default.nix index 933f42eb26..3cf436419f 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/lua-5/default.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/lua-5/default.nix @@ -1,5 +1,5 @@ # similar to interpreters/python/default.nix -{ stdenv, lib, callPackage, fetchurl, fetchpatch, makeBinaryWrapper }: +{ stdenv, lib, callPackage, fetchFromGitHub, fetchurl, fetchpatch, makeBinaryWrapper }: let @@ -8,7 +8,6 @@ let # copied from python passthruFun = { executable - , sourceVersion , luaversion , packageOverrides , luaOnBuildForBuild @@ -31,7 +30,7 @@ let generatedPackages = if (builtins.pathExists ../../lua-modules/generated-packages.nix) then (final: prev: callPackage ../../lua-modules/generated-packages.nix { inherit (final) callPackage; } final prev) else (final: prev: {}); - overridenPackages = callPackage ../../lua-modules/overrides.nix { }; + overriddenPackages = callPackage ../../lua-modules/overrides.nix { }; otherSplices = { selfBuildBuild = luaOnBuildForBuild.pkgs; @@ -44,7 +43,7 @@ let extra = spliced0: {}; extensions = lib.composeManyExtensions [ generatedPackages - overridenPackages + overriddenPackages overrides ]; in lib.makeScopeWithSplicing @@ -67,7 +66,7 @@ let withPackages = import ./with-packages.nix { inherit buildEnv luaPackages;}; pkgs = luaPackages; interpreter = "${self}/bin/${executable}"; - inherit executable luaversion sourceVersion; + inherit executable luaversion; luaOnBuild = luaOnBuildForHost.override { inherit packageOverrides; self = luaOnBuild; }; tests = callPackage ./tests { inherit (luaPackages) wrapLua; }; @@ -80,7 +79,7 @@ in rec { lua5_4 = callPackage ./interpreter.nix { self = lua5_4; - sourceVersion = { major = "5"; minor = "4"; patch = "4"; }; + version = "5.4.4"; hash = "sha256-Fkx4SWU7gK5nvsS3RzuIS/XMjS3KBWU0dewu0nuev2E="; makeWrapper = makeBinaryWrapper; inherit passthruFun; @@ -112,7 +111,7 @@ rec { lua5_3 = callPackage ./interpreter.nix { self = lua5_3; - sourceVersion = { major = "5"; minor = "3"; patch = "6"; }; + version = "5.3.6"; hash = "0q3d8qhd7p0b7a4mh9g7fxqksqfs6mr1nav74vq26qvkp2dxcpzw"; makeWrapper = makeBinaryWrapper; inherit passthruFun; @@ -129,7 +128,7 @@ rec { lua5_2 = callPackage ./interpreter.nix { self = lua5_2; - sourceVersion = { major = "5"; minor = "2"; patch = "4"; }; + version = "5.2.4"; hash = "0jwznq0l8qg9wh5grwg07b5cy3lzngvl5m2nl1ikp6vqssmf9qmr"; makeWrapper = makeBinaryWrapper; inherit passthruFun; @@ -146,7 +145,7 @@ rec { lua5_1 = callPackage ./interpreter.nix { self = lua5_1; - sourceVersion = { major = "5"; minor = "1"; patch = "5"; }; + version = "5.1.5"; hash = "2640fc56a795f29d28ef15e13c34a47e223960b0240e8cb0a82d9b0738695333"; makeWrapper = makeBinaryWrapper; inherit passthruFun; @@ -156,12 +155,12 @@ rec { luajit_2_0 = import ../luajit/2.0.nix { self = luajit_2_0; - inherit callPackage lib passthruFun; + inherit callPackage fetchFromGitHub lib passthruFun; }; luajit_2_1 = import ../luajit/2.1.nix { self = luajit_2_1; - inherit callPackage passthruFun; + inherit callPackage fetchFromGitHub passthruFun; }; } diff --git a/third_party/nixpkgs/pkgs/development/interpreters/lua-5/interpreter.nix b/third_party/nixpkgs/pkgs/development/interpreters/lua-5/interpreter.nix index c265785b8d..59afff3794 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/lua-5/interpreter.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/lua-5/interpreter.nix @@ -9,19 +9,19 @@ , pkgsBuildTarget , pkgsHostHost , pkgsTargetTarget -, sourceVersion +, version , hash , passthruFun , patches ? [] , postConfigure ? null , postBuild ? null , staticOnly ? stdenv.hostPlatform.isStatic -, luaAttr ? "lua${sourceVersion.major}_${sourceVersion.minor}" +, luaAttr ? "lua${lib.versions.major version}_${lib.versions.minor version}" } @ inputs: let luaPackages = self.pkgs; - luaversion = with sourceVersion; "${major}.${minor}"; + luaversion = lib.versions.majorMinor version; plat = if (stdenv.isLinux && lib.versionOlder self.luaversion "5.4") then "linux" else if (stdenv.isLinux && lib.versionAtLeast self.luaversion "5.4") then "linux-readline" @@ -36,7 +36,7 @@ in stdenv.mkDerivation rec { pname = "lua"; - version = "${luaversion}.${sourceVersion.patch}"; + inherit version; src = fetchurl { url = "https://www.lua.org/ftp/${pname}-${version}.tar.gz"; @@ -136,7 +136,7 @@ stdenv.mkDerivation rec { inputs' = lib.filterAttrs (n: v: ! lib.isDerivation v && n != "passthruFun") inputs; override = attr: let lua = attr.override (inputs' // { self = lua; }); in lua; in passthruFun rec { - inherit self luaversion packageOverrides luaAttr sourceVersion; + inherit self luaversion packageOverrides luaAttr; executable = "lua"; luaOnBuildForBuild = override pkgsBuildBuild.${luaAttr}; luaOnBuildForHost = override pkgsBuildHost.${luaAttr}; diff --git a/third_party/nixpkgs/pkgs/development/interpreters/luajit/2.0.nix b/third_party/nixpkgs/pkgs/development/interpreters/luajit/2.0.nix index 3df2ac457c..daa2987617 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/luajit/2.0.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/luajit/2.0.nix @@ -1,13 +1,18 @@ -{ self, callPackage, lib, passthruFun }: +{ self, callPackage, fetchFromGitHub, lib, passthruFun }: + callPackage ./default.nix { - sourceVersion = { major = "2"; minor = "0"; patch = "5"; }; - inherit self passthruFun; version = "2.0.5-2022-09-13"; - rev = "46e62cd963a426e83a60f691dcbbeb742c7b3ba2"; isStable = true; - hash = "sha256-/XR9+6NjXs2TrUVKJNkH2h970BkDNFqMDJTWcy/bswU="; + src = fetchFromGitHub { + owner = "LuaJIT"; + repo = "LuaJIT"; + rev = "46e62cd963a426e83a60f691dcbbeb742c7b3ba2"; + hash = "sha256-/XR9+6NjXs2TrUVKJNkH2h970BkDNFqMDJTWcy/bswU="; + }; + extraMeta = { # this isn't precise but it at least stops the useless Hydra build platforms = with lib; filter (p: !hasPrefix "aarch64-" p) (platforms.linux ++ platforms.darwin); }; + inherit self passthruFun; } diff --git a/third_party/nixpkgs/pkgs/development/interpreters/luajit/2.1.nix b/third_party/nixpkgs/pkgs/development/interpreters/luajit/2.1.nix index d2233f1581..8362aab55e 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/luajit/2.1.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/luajit/2.1.nix @@ -1,9 +1,13 @@ -{ self, callPackage, passthruFun }: +{ self, callPackage, fetchFromGitHub, passthruFun }: callPackage ./default.nix { - sourceVersion = { major = "2"; minor = "1"; patch = "0"; }; - inherit self passthruFun; version = "2.1.0-2022-10-04"; - rev = "6c4826f12c4d33b8b978004bc681eb1eef2be977"; isStable = false; - hash = "sha256-GMgoSVHrfIuLdk8mW9XgdemNFsAkkQR4wiGGjaAXAKg="; + src = fetchFromGitHub { + owner = "LuaJIT"; + repo = "LuaJIT"; + rev = "6c4826f12c4d33b8b978004bc681eb1eef2be977"; + hash = "sha256-GMgoSVHrfIuLdk8mW9XgdemNFsAkkQR4wiGGjaAXAKg="; + }; + + inherit self passthruFun; } diff --git a/third_party/nixpkgs/pkgs/development/interpreters/luajit/default.nix b/third_party/nixpkgs/pkgs/development/interpreters/luajit/default.nix index 1f830ac65d..64aa0345e8 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/luajit/default.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/luajit/default.nix @@ -3,9 +3,8 @@ , fetchFromGitHub , buildPackages , isStable -, hash -, rev , version +, src , extraMeta ? { } , callPackage , self @@ -15,7 +14,6 @@ , pkgsBuildTarget , pkgsHostHost , pkgsTargetTarget -, sourceVersion , passthruFun , enableFFI ? true , enableJIT ? true @@ -28,7 +26,7 @@ , enableAPICheck ? false , enableVMAssertions ? false , useSystemMalloc ? false -, luaAttr ? "luajit_${sourceVersion.major}_${sourceVersion.minor}" +, luaAttr ? "luajit_${lib.versions.major version}_${lib.versions.minor version}" } @ inputs: assert enableJITDebugModule -> enableJIT; assert enableGDBJITSupport -> enableJIT; @@ -51,12 +49,7 @@ let in stdenv.mkDerivation rec { pname = "luajit"; - inherit version; - src = fetchFromGitHub { - owner = "LuaJIT"; - repo = "LuaJIT"; - inherit hash rev; - }; + inherit version src; luaversion = "5.1"; @@ -113,7 +106,7 @@ stdenv.mkDerivation rec { inputs' = lib.filterAttrs (n: v: ! lib.isDerivation v && n != "passthruFun") inputs; override = attr: let lua = attr.override (inputs' // { self = lua; }); in lua; in passthruFun rec { - inherit self luaversion packageOverrides luaAttr sourceVersion; + inherit self luaversion packageOverrides luaAttr; executable = "lua"; luaOnBuildForBuild = override pkgsBuildBuild.${luaAttr}; luaOnBuildForHost = override pkgsBuildHost.${luaAttr}; diff --git a/third_party/nixpkgs/pkgs/development/interpreters/nickel/default.nix b/third_party/nixpkgs/pkgs/development/interpreters/nickel/default.nix index 00fd78bdd0..91200030f6 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/nickel/default.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/nickel/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "nickel"; - version = "0.3.0"; + version = "0.3.1"; src = fetchFromGitHub { owner = "tweag"; repo = pname; rev = "refs/tags/${version}"; # because pure ${version} doesn't work - hash = "sha256-L2MQ0dS9mZ+SOFoS/rclPtEl3/iFyEKn6Bse/ysHyKo="; + hash = "sha256-bUUQP7ze0j8d+VEckexDOferAgAHdKZbdKR3q0TNOeE="; }; - cargoSha256 = "sha256-3ucWGmylRatJOl8zktSRMXr5p6L+5+LQV6ALJTtQpiA="; + cargoSha256 = "sha256-E8eIUASjCIVsZhptbU41VfK8bFmA4FTT3LVagLrgUso="; meta = with lib; { homepage = "https://nickel-lang.org/"; @@ -27,6 +27,7 @@ rustPlatform.buildRustPackage rec { that are then fed to another system. It is designed to have a simple, well-understood core: it is in essence JSON with functions. ''; + changelog = "https://github.com/tweag/nickel/blob/${version}/RELEASES.md"; license = licenses.mit; maintainers = with maintainers; [ AndersonTorres ]; }; diff --git a/third_party/nixpkgs/pkgs/development/interpreters/octave/default.nix b/third_party/nixpkgs/pkgs/development/interpreters/octave/default.nix index 8f0cd0e6a2..dff3e4101d 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/octave/default.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/octave/default.nix @@ -29,7 +29,7 @@ , blas, lapack # These two should use the same lapack and blas as the above , qrupdate, arpack, suitesparse ? null -# If set to true, the above 5 deps are overriden to use the blas and lapack +# If set to true, the above 5 deps are overridden to use the blas and lapack # with 64 bit indexes support. If all are not compatible, the build will fail. , use64BitIdx ? false , libwebp @@ -82,7 +82,7 @@ let ; qrupdate' = qrupdate.override { # If use64BitIdx is false, this override doesn't evaluate to a new - # derivation, as blas and lapack are not overriden. + # derivation, as blas and lapack are not overridden. blas = blas'; lapack = lapack'; }; diff --git a/third_party/nixpkgs/pkgs/development/interpreters/python/python-packages-base.nix b/third_party/nixpkgs/pkgs/development/interpreters/python/python-packages-base.nix index 81ad194a25..92b0a456b0 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/python/python-packages-base.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/python/python-packages-base.nix @@ -12,7 +12,7 @@ let namePrefix = python.libPrefix + "-"; - # Derivations built with `buildPythonPackage` can already be overriden with `override`, `overrideAttrs`, and `overrideDerivation`. + # Derivations built with `buildPythonPackage` can already be overridden with `override`, `overrideAttrs`, and `overrideDerivation`. # This function introduces `overridePythonAttrs` and it overrides the call to `buildPythonPackage`. makeOverridablePythonPackage = f: origArgs: let diff --git a/third_party/nixpkgs/pkgs/development/interpreters/python/update-python-libraries/update-python-libraries.py b/third_party/nixpkgs/pkgs/development/interpreters/python/update-python-libraries/update-python-libraries.py index 07a72a3f2e..feb44bef07 100755 --- a/third_party/nixpkgs/pkgs/development/interpreters/python/update-python-libraries/update-python-libraries.py +++ b/third_party/nixpkgs/pkgs/development/interpreters/python/update-python-libraries/update-python-libraries.py @@ -248,7 +248,7 @@ FORMATS = { } def _determine_fetcher(text): - # Count occurences of fetchers. + # Count occurrences of fetchers. nfetchers = sum(text.count('src = {}'.format(fetcher)) for fetcher in FETCHERS.keys()) if nfetchers == 0: raise ValueError("no fetcher.") diff --git a/third_party/nixpkgs/pkgs/development/interpreters/wasmtime/default.nix b/third_party/nixpkgs/pkgs/development/interpreters/wasmtime/default.nix index dc9e93b045..b2844f723b 100644 --- a/third_party/nixpkgs/pkgs/development/interpreters/wasmtime/default.nix +++ b/third_party/nixpkgs/pkgs/development/interpreters/wasmtime/default.nix @@ -2,17 +2,17 @@ rustPlatform.buildRustPackage rec { pname = "wasmtime"; - version = "3.0.1"; + version = "4.0.0"; src = fetchFromGitHub { owner = "bytecodealliance"; repo = pname; rev = "v${version}"; - sha256 = "sha256-DJEX/BoiabAQKRKyXuefCoJouFKZ3sAnCQDsHmNC/t8="; + hash = "sha256-Vw3+KlAuCQiyBfPOZrUotgrdkG+FRjXg8AxAanfbwJQ="; fetchSubmodules = true; }; - cargoSha256 = "sha256-L+VozBK1RJGg2F51Aeau8jH1XM5IfR7qkhb7iXmQXE4="; + cargoHash = "sha256-gV3Yf7YL3D3hrymYW1b80uOlp7RYRWFC7GtxAot5Ut0="; cargoBuildFlags = [ "--package wasmtime-cli" diff --git a/third_party/nixpkgs/pkgs/development/libraries/apache-activemq/default.nix b/third_party/nixpkgs/pkgs/development/libraries/apache-activemq/default.nix index fd2ba8bc73..9b19625016 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/apache-activemq/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/apache-activemq/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { pname = "apache-activemq"; - version = "5.17.2"; + version = "5.17.3"; src = fetchurl { - sha256 = "sha256-QhY4ckDvOOkS+IFixS4mEo8PctFZEIUtEusKeEWBkZU="; + sha256 = "sha256-pMxMOi8TZwfCxpbzuz7iqG2+/xueteI3sU7cDF5aMo8="; url = "mirror://apache/activemq/${version}/${pname}-${version}-bin.tar.gz"; }; diff --git a/third_party/nixpkgs/pkgs/development/libraries/arrow-cpp/default.nix b/third_party/nixpkgs/pkgs/development/libraries/arrow-cpp/default.nix index 81e5763aa3..f5e88b1203 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/arrow-cpp/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/arrow-cpp/default.nix @@ -206,7 +206,7 @@ stdenv.mkDerivation rec { "-DCMAKE_INSTALL_RPATH=@loader_path/../lib" # needed for tools executables ] ++ lib.optional (!stdenv.isx86_64) "-DARROW_USE_SIMD=OFF" ++ lib.optional enableS3 "-DAWSSDK_CORE_HEADER_FILE=${aws-sdk-cpp}/include/aws/core/Aws.h" - ++ lib.optionals enableGcs [ "-DCMAKE_CXX_STANDARD=17" ]; + ++ lib.optionals enableGcs [ "-DCMAKE_CXX_STANDARD=${grpc.cxxStandard}" ]; doInstallCheck = true; ARROW_TEST_DATA = lib.optionalString doInstallCheck "${arrow-testing}/data"; diff --git a/third_party/nixpkgs/pkgs/development/libraries/clutter-gst/default.nix b/third_party/nixpkgs/pkgs/development/libraries/clutter-gst/default.nix index 71e32e074c..e00cda47da 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/clutter-gst/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/clutter-gst/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, lib, stdenv, pkg-config, clutter, gtk3, glib, cogl, gnome, gdk-pixbuf }: +{ fetchurl, fetchpatch, lib, stdenv, pkg-config, clutter, gtk3, glib, cogl, gnome, gdk-pixbuf }: stdenv.mkDerivation rec { pname = "clutter-gst"; @@ -11,6 +11,16 @@ stdenv.mkDerivation rec { sha256 = "17czmpl92dzi4h3rn5rishk015yi3jwiw29zv8qan94xcmnbssgy"; }; + patches = [ + # Add patch from Arch Linux to fix corrupted display with Cheese + # https://gitlab.gnome.org/GNOME/cheese/-/issues/51 + # https://github.com/archlinux/svntogit-packages/tree/packages/clutter-gst/trunk + (fetchpatch { + url = "https://github.com/archlinux/svntogit-packages/raw/c4dd0bbda35aa603ee790676f6e15541f71b6d36/trunk/0001-video-sink-Remove-RGBx-BGRx-support.patch"; + sha256 = "sha256-k1fCiM/u7q81UrDYgbqhN/C+q9DVQ+qOyq6vmA3hbSQ="; + }) + ]; + propagatedBuildInputs = [ clutter gtk3 glib cogl gdk-pixbuf ]; nativeBuildInputs = [ pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/dqlite/default.nix b/third_party/nixpkgs/pkgs/development/libraries/dqlite/default.nix index 748e1e756c..07d753dd83 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/dqlite/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/dqlite/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchFromGitHub, autoreconfHook, pkg-config, file, libuv -, raft-canonical, sqlite-replication }: +, raft-canonical, sqlite }: stdenv.mkDerivation rec { pname = "dqlite"; @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { buildInputs = [ libuv raft-canonical.dev - sqlite-replication + sqlite ]; enableParallelBuilding = true; diff --git a/third_party/nixpkgs/pkgs/development/libraries/draco/default.nix b/third_party/nixpkgs/pkgs/development/libraries/draco/default.nix index 1d6a2b4da9..ab354b836b 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/draco/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/draco/default.nix @@ -43,9 +43,7 @@ stdenv.mkDerivation rec { "-DDRACO_TINYGLTF_PATH=${tinygltf}" ]; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "Library for compressing and decompressing 3D geometric meshes and point clouds"; diff --git a/third_party/nixpkgs/pkgs/development/libraries/duckdb/default.nix b/third_party/nixpkgs/pkgs/development/libraries/duckdb/default.nix index 654c58ba69..8d95bedf02 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/duckdb/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/duckdb/default.nix @@ -17,13 +17,13 @@ let in stdenv.mkDerivation rec { pname = "duckdb"; - version = "0.6.0"; + version = "0.6.1"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-XCEX2VCynbMUP5xsxWq8PlHnfrBfES5c2fuu2jhM+tI="; + sha256 = "sha256-no4fcukEpzKmh2i41sdXGDljGhEDkzk3rYBATqlq6Gw="; }; patches = [ ./version.patch ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/editline/default.nix b/third_party/nixpkgs/pkgs/development/libraries/editline/default.nix index 2b2ffbea31..15a056edb6 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/editline/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/editline/default.nix @@ -22,9 +22,7 @@ stdenv.mkDerivation rec { outputs = [ "out" "dev" "man" "doc" ]; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { homepage = "https://troglobit.com/projects/editline/"; diff --git a/third_party/nixpkgs/pkgs/development/libraries/flatpak/default.nix b/third_party/nixpkgs/pkgs/development/libraries/flatpak/default.nix index d79923c0f8..60ad286831 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/flatpak/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/flatpak/default.nix @@ -54,14 +54,14 @@ stdenv.mkDerivation (finalAttrs: { pname = "flatpak"; - version = "1.14.0"; + version = "1.14.1"; # TODO: split out lib once we figure out what to do with triggerdir outputs = [ "out" "dev" "man" "doc" "devdoc" "installedTests" ]; src = fetchurl { url = "https://github.com/flatpak/flatpak/releases/download/${finalAttrs.version}/flatpak-${finalAttrs.version}.tar.xz"; - sha256 = "sha256-jidpc3cOok3fJZetSuzTa5g5PmvekeSOF0OqymfyeBU="; # Taken from https://github.com/flatpak/flatpak/releases/ + sha256 = "sha256-CjyCM0MBjMWJhrbIJUVgnIzb8Pul8B2IMHvRSstd058="; # Taken from https://github.com/flatpak/flatpak/releases/ }; patches = [ @@ -89,10 +89,6 @@ stdenv.mkDerivation (finalAttrs: { # https://github.com/NixOS/nixpkgs/issues/53441 ./unset-env-vars.patch - # Do not clear XDG_DATA_DIRS in fish shell - # https://github.com/flatpak/flatpak/pull/5123 - ./no-breaking-fish.patch - # The icon validator needs to access the gdk-pixbuf loaders in the Nix store # and cannot bind FHS paths since those are not available on NixOS. finalAttrs.passthru.icon-validator-patch diff --git a/third_party/nixpkgs/pkgs/development/libraries/flatpak/no-breaking-fish.patch b/third_party/nixpkgs/pkgs/development/libraries/flatpak/no-breaking-fish.patch deleted file mode 100644 index 2a67aead12..0000000000 --- a/third_party/nixpkgs/pkgs/development/libraries/flatpak/no-breaking-fish.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- a/profile/flatpak.fish -+++ b/profile/flatpak.fish -@@ -1,7 +1,7 @@ - if type -q flatpak - # Set XDG_DATA_DIRS to include Flatpak installations - -- set -x --path XDG_DATA_DIRS -+ set -x --path XDG_DATA_DIRS $XDG_DATA_DIRS - - set -q XDG_DATA_DIRS[1]; or set XDG_DATA_DIRS /usr/local/share /usr/share - set -q XDG_DATA_HOME; or set -l XDG_DATA_HOME $HOME/.local/share diff --git a/third_party/nixpkgs/pkgs/development/libraries/folks/default.nix b/third_party/nixpkgs/pkgs/development/libraries/folks/default.nix index 0471283ef0..a03df4e5e2 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/folks/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/folks/default.nix @@ -119,6 +119,6 @@ stdenv.mkDerivation rec { homepage = "https://wiki.gnome.org/Projects/Folks"; license = licenses.lgpl2Plus; maintainers = teams.gnome.members; - platforms = platforms.gnu ++ platforms.linux; # arbitrary choice + platforms = platforms.unix; }; } diff --git a/third_party/nixpkgs/pkgs/development/libraries/fplll/default.nix b/third_party/nixpkgs/pkgs/development/libraries/fplll/default.nix index ba461b08f9..8f1bc88d7f 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/fplll/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/fplll/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "fplll"; - version = "5.4.2"; + version = "5.4.3"; src = fetchFromGitHub { owner = "fplll"; repo = "fplll"; rev = version; - sha256 = "sha256-6pzErZtT5xzCMcsNy2EwrZHiAICLrRl1dv59bp23hAA="; + sha256 = "sha256-utME3hZ3p2tx7vmp5dlAJ6J9MFEhFm/qbscGu1t9jnc="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/libraries/gdal/default.nix b/third_party/nixpkgs/pkgs/development/libraries/gdal/default.nix index 731f458efe..689b38c6aa 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/gdal/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/gdal/default.nix @@ -1,7 +1,6 @@ { lib , stdenv , fetchFromGitHub -, fetchpatch , bison , cmake , doxygen @@ -62,24 +61,15 @@ stdenv.mkDerivation rec { pname = "gdal"; - version = "3.6.0.1"; + version = "3.6.1"; src = fetchFromGitHub { owner = "OSGeo"; repo = "gdal"; rev = "v${version}"; - hash = "sha256-Yx7tmj2Y26FE5rzN+w1gg/7yRckNo6gLudrAPRoCro4="; + hash = "sha256-hWuV73b7czmbxpnd82V2FHM+ak9JviDHVodVXAHh/pc="; }; - patches = [ - # https://github.com/OSGeo/gdal/pull/6754 - (fetchpatch { - name = "skip-test-failing-on-macos.patch"; - url = "https://github.com/OSGeo/gdal/commit/65b2b12fa6638653f54d3ca0f8066225597832b9.patch"; - hash = "sha256-zpj4jMp01Oz+Zk1b59qdoVxhkwWmTN9bwoKwbau2ADY="; - }) - ]; - nativeBuildInputs = [ bison cmake diff --git a/third_party/nixpkgs/pkgs/development/libraries/gdcm/default.nix b/third_party/nixpkgs/pkgs/development/libraries/gdcm/default.nix index fa475a4593..b6aaa341da 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/gdcm/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/gdcm/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "gdcm"; - version = "3.0.17"; + version = "3.0.20"; src = fetchFromGitHub { owner = "malaterre"; repo = "GDCM"; rev = "v${version}"; - sha256 = "sha256-LQQBVl3DraZRnh0SXP0k1tJoKYh+t+uXd2JIerUDYlM="; + sha256 = "sha256-MaQk2VlaZxZPNzVF9pUnEzMaXyN0tq2P3kodnGpl6PA="; }; cmakeFlags = [ diff --git a/third_party/nixpkgs/pkgs/development/libraries/gensio/default.nix b/third_party/nixpkgs/pkgs/development/libraries/gensio/default.nix index 2ae3d8d93b..16000833d4 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/gensio/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/gensio/default.nix @@ -18,9 +18,7 @@ stdenv.mkDerivation rec { }; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; configureFlags = [ diff --git a/third_party/nixpkgs/pkgs/development/libraries/getdns/default.nix b/third_party/nixpkgs/pkgs/development/libraries/getdns/default.nix index 3691dc1640..777e4ba4ef 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/getdns/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/getdns/default.nix @@ -1,7 +1,7 @@ # Getdns and Stubby are released together, see https://getdnsapi.net/releases/ { lib, stdenv, fetchurl, cmake, darwin, doxygen, libidn2, libyaml, openssl -, systemd, unbound, yq }: +, systemd, unbound, yq, nimPackages }: let metaCommon = with lib; { maintainers = with maintainers; [ leenaars ehmry ]; @@ -12,7 +12,7 @@ in rec { getdns = stdenv.mkDerivation rec { pname = "getdns"; - version = "1.7.2"; + version = "1.7.3"; outputs = [ "out" "dev" "lib" "man" ]; src = fetchurl { @@ -22,7 +22,7 @@ in rec { }/${pname}-${version}.tar.gz"; sha256 = # upstream publishes hashes in hex format - "db89fd2a940000e03ecf48d0232b4532e5f0602e80b592be406fd57ad76fdd17"; + "f1404ca250f02e37a118aa00cf0ec2cbe11896e060c6d369c6761baea7d55a2c"; }; nativeBuildInputs = [ cmake doxygen ]; @@ -38,6 +38,8 @@ in rec { postInstall = "rm -r $out/share/doc"; + passthru.tests.nim = nimPackages.getdns; + meta = with lib; metaCommon // { description = "A modern asynchronous DNS API"; @@ -58,7 +60,7 @@ in rec { stubby = stdenv.mkDerivation rec { pname = "stubby"; - version = "0.4.2"; + version = "0.4.3"; outputs = [ "out" "man" "stubbyExampleJson" ]; inherit (getdns) src; diff --git a/third_party/nixpkgs/pkgs/development/libraries/git2-cpp/default.nix b/third_party/nixpkgs/pkgs/development/libraries/git2-cpp/default.nix new file mode 100644 index 0000000000..aae9585186 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/libraries/git2-cpp/default.nix @@ -0,0 +1,30 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "git2-cpp"; + version = "0.1.1"; + + src = fetchFromGitHub { + owner = "ken-matsui"; + repo = "git2-cpp"; + rev = finalAttrs.version; + hash = "sha256-2jKSQW6dUCIKtl33paSTuZdYAaYdFnILx/Gxv/ghFiI="; + }; + + nativeBuildInputs = [ + cmake + ]; + + meta = with lib; { + homepage = "https://github.com/ken-matsui/git2-cpp"; + description = "libgit2 bindings for C++"; + license = licenses.mit; + maintainers = with maintainers; [ ken-matsui ]; + platforms = platforms.unix; + }; +}) +# TODO [ ken-matsui ]: tests diff --git a/third_party/nixpkgs/pkgs/development/libraries/glib/default.nix b/third_party/nixpkgs/pkgs/development/libraries/glib/default.nix index 12f46af022..5b4b18cf91 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/glib/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/glib/default.nix @@ -18,8 +18,7 @@ , coreutils, dbus, libxml2, tzdata , desktop-file-utils, shared-mime-info , darwin -# update script -, runCommand, git, coccinelle +, makeHardcodeGsettingsPatch }: assert stdenv.isLinux -> util-linuxMinimal != null; @@ -32,7 +31,7 @@ assert stdenv.isLinux -> util-linuxMinimal != null; # $out/bin/gtester-report' to postInstall if this is solved /* * Use --enable-installed-tests for GNOME-related packages, - and use them as a separately installed tests runned by Hydra + and use them as a separately installed tests run by Hydra (they should test an already installed package) https://wiki.gnome.org/GnomeGoals/InstalledTests * Support org.freedesktop.Application, including D-Bus activation from desktop files @@ -271,55 +270,18 @@ stdenv.mkDerivation (finalAttrs: { packageName = "glib"; versionPolicy = "odd-unstable"; }; - /* - can be used as part of an update script to automatically create a patch - hardcoding the path of all gsettings schemas in C code. - For example: - passthru = { - hardcodeGsettingsPatch = glib.mkHardcodeGsettingsPatch { - inherit src; - glib-schema-to-var = { - ... - }; - }; - updateScript = - let - updateSource = ...; - patch = _experimental-update-script-combinators.copyAttrOutputToFile "evolution-ews.hardcodeGsettingsPatch" ./hardcode-gsettings.patch; - in - _experimental-update-script-combinators.sequence [ - updateSource - patch - ]; - }; - } - takes as input a mapping from schema path to variable name. - For example `{ "org.gnome.evolution" = "EVOLUTION_SCHEMA_PATH"; }` - hardcodes looking for `org.gnome.evolution` into `@EVOLUTION_SCHEMA_PATH@`. - All schemas must be listed. - */ - mkHardcodeGsettingsPatch = { src, glib-schema-to-var }: - runCommand - "hardcode-gsettings.patch" - { + mkHardcodeGsettingsPatch = + { + src, + glib-schema-to-var, + }: + builtins.trace + "glib.mkHardcodeGsettingsPatch is deprecated, please use makeHardcodeGsettingsPatch instead" + (makeHardcodeGsettingsPatch { inherit src; - nativeBuildInputs = [ - git - coccinelle - python3 # For patch script - ]; - } - '' - unpackPhase - cd "''${sourceRoot:-.}" - set -x - cp ${builtins.toFile "glib-schema-to-var.json" (builtins.toJSON glib-schema-to-var)} ./glib-schema-to-var.json - git init - git add -A - spatch --sp-file "${./hardcode-gsettings.cocci}" --dir . --in-place - git diff > "$out" - ''; + schemaIdToVariableMapping = glib-schema-to-var; + }); }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/libraries/glib/hardcode-gsettings.cocci b/third_party/nixpkgs/pkgs/development/libraries/glib/hardcode-gsettings.cocci deleted file mode 100644 index bedacf846b..0000000000 --- a/third_party/nixpkgs/pkgs/development/libraries/glib/hardcode-gsettings.cocci +++ /dev/null @@ -1,70 +0,0 @@ -/** - * Since Nix does not have a standard location like /usr/share, - * where GSettings system could look for schemas, we need to point the software to a correct location somehow. - * For executables, we handle this using wrappers but this is not an option for libraries like e-d-s. - * Instead, we hardcode the schema path when creating the settings. - * A schema path (ie org.gnome.evolution) can be replaced by @EVOLUTION_SCHEMA_PATH@ - * which is then replaced at build time by substituteAll. - * The mapping is provided in a json file ./glib-schema-to-var.json - */ - -@initialize:python@ -@@ -import json - -cpp_constants = {} - -def register_cpp_constant(const_name, val): - cpp_constants[const_name] = val.strip() - -def resolve_cpp_constant(const_name): - return cpp_constants.get(const_name, const_name) - -with open("./glib-schema-to-var.json") as mapping_file: - schema_to_var = json.load(mapping_file); - -def get_schema_directory(schema_path): - # Sometimes the schema id is referenced using C preprocessor #define constant in the same file - # let’s try to resolve it first. - schema_path = resolve_cpp_constant(schema_path.strip()).strip('"') - if schema_path in schema_to_var: - return f'"@{schema_to_var[schema_path]}@"' - raise Exception(f"Unknown schema path {schema_path!r}, please add it to ./glib-schema-to-var.json") - - -@find_cpp_constants@ -identifier const_name; -expression val; -@@ - -#define const_name val - -@script:python record_cpp_constants depends on find_cpp_constants@ -const_name << find_cpp_constants.const_name; -val << find_cpp_constants.val; -@@ - -register_cpp_constant(const_name, val) - - -@depends on ever record_cpp_constants || never record_cpp_constants@ -// We want to run after #define constants have been collected but even if there are no #defines. -expression SCHEMA_PATH; -expression settings; -// Coccinelle does not like autocleanup macros in + sections, -// let’s use fresh id with concatenation to produce the code as a string. -fresh identifier schema_source_decl = "g_autoptr(GSettingsSchemaSource) " ## "schema_source"; -fresh identifier schema_decl = "g_autoptr(GSettingsSchema) " ## "schema"; -fresh identifier SCHEMA_DIRECTORY = script:python(SCHEMA_PATH) { get_schema_directory(SCHEMA_PATH) }; -@@ --settings = g_settings_new(SCHEMA_PATH); -+{ -+ schema_source_decl; -+ schema_decl; -+ schema_source = g_settings_schema_source_new_from_directory(SCHEMA_DIRECTORY, -+ g_settings_schema_source_get_default(), -+ TRUE, -+ NULL); -+ schema = g_settings_schema_source_lookup(schema_source, SCHEMA_PATH, FALSE); -+ settings = g_settings_new_full(schema, NULL, NULL); -+} diff --git a/third_party/nixpkgs/pkgs/development/libraries/gnome-video-effects/default.nix b/third_party/nixpkgs/pkgs/development/libraries/gnome-video-effects/default.nix index e8fd3ca7e2..cc6f3b2ecd 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/gnome-video-effects/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/gnome-video-effects/default.nix @@ -39,7 +39,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "A collection of GStreamer effects to be used in different GNOME Modules"; homepage = "https://wiki.gnome.org/Projects/GnomeVideoEffects"; - platforms = platforms.linux; + platforms = platforms.unix; maintainers = teams.gnome.members; license = licenses.gpl2; }; diff --git a/third_party/nixpkgs/pkgs/development/libraries/gobject-introspection/wrapper.nix b/third_party/nixpkgs/pkgs/development/libraries/gobject-introspection/wrapper.nix index 6ac3224b2d..53b1a35f82 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/gobject-introspection/wrapper.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/gobject-introspection/wrapper.nix @@ -19,24 +19,24 @@ let # passing this stdenv to `targetPackages...` breaks due to splicing not working in `.override`` argsForTarget = builtins.removeAttrs args [ "stdenv" ]; - overridenUnwrappedGir = gobject-introspection-unwrapped.override args; + overriddenUnwrappedGir = gobject-introspection-unwrapped.override args; # if we have targetPackages.gobject-introspection then propagate that overridenTargetUnwrappedGir = if targetPackages ? gobject-introspection-unwrapped then targetPackages.gobject-introspection-unwrapped.override argsForTarget - else overridenUnwrappedGir; + else overriddenUnwrappedGir; in # wrap both pkgsCrossX.buildPackages.gobject-introspection and {pkgs,pkgsSomethingExecutableOnBuildSystem).buildPackages.gobject-introspection if (!stdenv.hostPlatform.canExecute stdenv.targetPlatform) && stdenv.targetPlatform.emulatorAvailable buildPackages then - overridenUnwrappedGir.overrideAttrs + overriddenUnwrappedGir.overrideAttrs (previousAttrs: { pname = "gobject-introspection-wrapped"; passthru = previousAttrs.passthru // { - unwrapped = overridenUnwrappedGir; + unwrapped = overriddenUnwrappedGir; }; dontStrip = true; depsTargetTargetPropagated = [ overridenTargetUnwrappedGir ]; @@ -44,8 +44,8 @@ then eval fixupPhase ${lib.concatMapStrings (output: '' mkdir -p ${"$" + "${output}"} - ${lib.getExe buildPackages.xorg.lndir} ${overridenUnwrappedGir.${output}} ${"$" + "${output}"} - '') overridenUnwrappedGir.outputs} + ${lib.getExe buildPackages.xorg.lndir} ${overriddenUnwrappedGir.${output}} ${"$" + "${output}"} + '') overriddenUnwrappedGir.outputs} cp $dev/bin/g-ir-compiler $dev/bin/.g-ir-compiler-wrapped cp $dev/bin/g-ir-scanner $dev/bin/.g-ir-scanner-wrapped @@ -87,11 +87,11 @@ then ''; }) else - overridenUnwrappedGir.overrideAttrs (previousAttrs: + overriddenUnwrappedGir.overrideAttrs (previousAttrs: { pname = "gobject-introspection-wrapped"; passthru = previousAttrs.passthru // { - unwrapped = overridenUnwrappedGir; + unwrapped = overriddenUnwrappedGir; }; dontStrip = true; depsTargetTargetPropagated = [ overridenTargetUnwrappedGir ]; @@ -99,7 +99,7 @@ else eval fixupPhase ${lib.concatMapStrings (output: '' mkdir -p ${"$" + "${output}"} - ${lib.getExe buildPackages.xorg.lndir} ${overridenUnwrappedGir.${output}} ${"$" + "${output}"} - '') overridenUnwrappedGir.outputs} + ${lib.getExe buildPackages.xorg.lndir} ${overriddenUnwrappedGir.${output}} ${"$" + "${output}"} + '') overriddenUnwrappedGir.outputs} ''; }) diff --git a/third_party/nixpkgs/pkgs/development/libraries/google-cloud-cpp/default.nix b/third_party/nixpkgs/pkgs/development/libraries/google-cloud-cpp/default.nix index 3ffaedb6b7..be6da72645 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/google-cloud-cpp/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/google-cloud-cpp/default.nix @@ -117,7 +117,7 @@ stdenv.mkDerivation rec { # this adds a good chunk of time to the build "-DBUILD_TESTING:BOOL=ON" "-DGOOGLE_CLOUD_CPP_ENABLE_EXAMPLES:BOOL=OFF" - "-DCMAKE_CXX_STANDARD=17" + "-DCMAKE_CXX_STANDARD=${grpc.cxxStandard}" ] ++ lib.optionals (apis != [ "*" ]) [ "-DGOOGLE_CLOUD_CPP_ENABLE=${lib.concatStringsSep ";" apis}" ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/graphene/default.nix b/third_party/nixpkgs/pkgs/development/libraries/graphene/default.nix index baf42430c2..3e13e8b749 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/graphene/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/graphene/default.nix @@ -100,9 +100,7 @@ stdenv.mkDerivation rec { installedTests = nixosTests.installed-tests.graphene; }; - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/libraries/grpc/default.nix b/third_party/nixpkgs/pkgs/development/libraries/grpc/default.nix index b924f3f51d..8a3a936b14 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/grpc/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/grpc/default.nix @@ -54,28 +54,18 @@ stdenv.mkDerivation rec { buildInputs = [ openssl protobuf ] ++ lib.optionals stdenv.isLinux [ libnsl ]; - cmakeFlags = - let - # Needs to be compiled with -std=c++11 for clang < 11. Interestingly this is - # only an issue with the useLLVM stdenv, not the darwin stdenv… - # https://github.com/grpc/grpc/issues/26473#issuecomment-860885484 - useLLVMAndOldCC = (stdenv.hostPlatform.useLLVM or false) && lib.versionOlder stdenv.cc.cc.version "11.0"; - # With GCC 9 (current aarch64-linux) it fails with c++17 but OK with c++14. - useOldGCC = !(stdenv.hostPlatform.useLLVM or false) && lib.versionOlder stdenv.cc.cc.version "10"; - cxxStandard = if useLLVMAndOldCC then "11" else if useOldGCC then "14" else "17"; - in - [ - "-DgRPC_ZLIB_PROVIDER=package" - "-DgRPC_CARES_PROVIDER=package" - "-DgRPC_RE2_PROVIDER=package" - "-DgRPC_SSL_PROVIDER=package" - "-DgRPC_PROTOBUF_PROVIDER=package" - "-DgRPC_ABSL_PROVIDER=package" - "-DBUILD_SHARED_LIBS=ON" - "-DCMAKE_CXX_STANDARD=${cxxStandard}" - ] ++ lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ - "-D_gRPC_PROTOBUF_PROTOC_EXECUTABLE=${buildPackages.protobuf}/bin/protoc" - ]; + cmakeFlags = [ + "-DgRPC_ZLIB_PROVIDER=package" + "-DgRPC_CARES_PROVIDER=package" + "-DgRPC_RE2_PROVIDER=package" + "-DgRPC_SSL_PROVIDER=package" + "-DgRPC_PROTOBUF_PROVIDER=package" + "-DgRPC_ABSL_PROVIDER=package" + "-DBUILD_SHARED_LIBS=ON" + "-DCMAKE_CXX_STANDARD=${passthru.cxxStandard}" + ] ++ lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ + "-D_gRPC_PROTOBUF_PROTOC_EXECUTABLE=${buildPackages.protobuf}/bin/protoc" + ]; # CMake creates a build directory by default, this conflicts with the # basel BUILD file on case-insensitive filesystems. @@ -97,6 +87,17 @@ stdenv.mkDerivation rec { enableParallelBuilds = true; + passthru.cxxStandard = + let + # Needs to be compiled with -std=c++11 for clang < 11. Interestingly this is + # only an issue with the useLLVM stdenv, not the darwin stdenv… + # https://github.com/grpc/grpc/issues/26473#issuecomment-860885484 + useLLVMAndOldCC = (stdenv.hostPlatform.useLLVM or false) && lib.versionOlder stdenv.cc.cc.version "11.0"; + # With GCC 9 (current aarch64-linux) it fails with c++17 but OK with c++14. + useOldGCC = !(stdenv.hostPlatform.useLLVM or false) && lib.versionOlder stdenv.cc.cc.version "10"; + in + (if useLLVMAndOldCC then "11" else if useOldGCC then "14" else "17"); + passthru.tests = { inherit (python3.pkgs) grpcio-status grpcio-tools; inherit arrow-cpp; diff --git a/third_party/nixpkgs/pkgs/development/libraries/gstreamer/good/default.nix b/third_party/nixpkgs/pkgs/development/libraries/gstreamer/good/default.nix index e7b72fc34e..1cd9eed123 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/gstreamer/good/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/gstreamer/good/default.nix @@ -163,7 +163,7 @@ stdenv.mkDerivation rec { # fails 1 tests with "Unexpected critical/warning: g_object_set_is_valid_property: object class 'GstRtpStorage' has no property named ''" doCheck = false; - # must be explicitely set since 5590e365 + # must be explicitly set since 5590e365 dontWrapQtApps = true; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/libraries/gtk/2.x.nix b/third_party/nixpkgs/pkgs/development/libraries/gtk/2.x.nix index 396366324d..3568bbfed4 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/gtk/2.x.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/gtk/2.x.nix @@ -1,5 +1,5 @@ { config, lib, substituteAll, stdenv, fetchurl, pkg-config, gettext, glib, atk, pango, cairo, perl, xorg -, gdk-pixbuf, xlibsWrapper, gobject-introspection +, gdk-pixbuf, gobject-introspection , xineramaSupport ? stdenv.isLinux , cupsSupport ? config.gtk2.cups or stdenv.isLinux, cups , gdktarget ? if stdenv.isDarwin then "quartz" else "x11" @@ -57,7 +57,7 @@ stdenv.mkDerivation rec { ++ optionals (stdenv.isLinux || stdenv.isDarwin) [ libXrandr libXrender libXcomposite libXi libXcursor ] - ++ optionals stdenv.isDarwin [ xlibsWrapper libXdamage ] + ++ optionals stdenv.isDarwin [ libXdamage ] ++ optional xineramaSupport libXinerama ++ optionals cupsSupport [ cups ] ++ optionals stdenv.isDarwin [ AppKit Cocoa ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/gtk/4.x.nix b/third_party/nixpkgs/pkgs/development/libraries/gtk/4.x.nix index ac4b0b3479..11d00dfa1c 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/gtk/4.x.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/gtk/4.x.nix @@ -63,7 +63,7 @@ in stdenv.mkDerivation rec { pname = "gtk4"; - version = "4.8.2"; + version = "4.8.3"; outputs = [ "out" "dev" ] ++ lib.optionals x11Support [ "devdoc" ]; outputBin = "dev"; @@ -75,7 +75,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://gnome/sources/gtk/${lib.versions.majorMinor version}/gtk-${version}.tar.xz"; - sha256 = "hbehYLbgLq+k59OPBG+HIPq1N9P+c8AchkMzqYOmkqk="; + sha256 = "s2L5aNCFtNPZNA1NOMcGN33tnVN05pSitrfmKS48unQ="; }; depsBuildBuild = [ diff --git a/third_party/nixpkgs/pkgs/development/libraries/gtksourceview/5.x.nix b/third_party/nixpkgs/pkgs/development/libraries/gtksourceview/5.x.nix index 97cb693e35..d3ac8246d9 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/gtksourceview/5.x.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/gtksourceview/5.x.nix @@ -86,10 +86,12 @@ stdenv.mkDerivation rec { checkPhase = '' runHook preCheck - XDG_DATA_DIRS="$XDG_DATA_DIRS:${shared-mime-info}/share" \ - xvfb-run -s '-screen 0 800x600x24' dbus-run-session \ - --config-file=${dbus}/share/dbus-1/session.conf \ - meson test --no-rebuild --print-errorlogs + env \ + XDG_DATA_DIRS="$XDG_DATA_DIRS:${shared-mime-info}/share" \ + GTK_A11Y=none \ + xvfb-run -s '-screen 0 800x600x24' dbus-run-session \ + --config-file=${dbus}/share/dbus-1/session.conf \ + meson test --no-rebuild --print-errorlogs runHook postCheck ''; diff --git a/third_party/nixpkgs/pkgs/development/libraries/hwloc/default.nix b/third_party/nixpkgs/pkgs/development/libraries/hwloc/default.nix index 03b640592a..426f87047c 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/hwloc/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/hwloc/default.nix @@ -1,14 +1,18 @@ { lib, stdenv, fetchurl, pkg-config, expat, ncurses, pciutils, numactl -, x11Support ? false, libX11, cairo +, x11Support ? false +, libX11 +, cairo +, enableCuda ? false +, cudaPackages }: stdenv.mkDerivation rec { pname = "hwloc"; - version = "2.8.0"; + version = "2.9.0"; src = fetchurl { url = "https://www.open-mpi.org/software/hwloc/v${lib.versions.majorMinor version}/downloads/hwloc-${version}.tar.bz2"; - sha256 = "sha256-NIpy/NSMMqgj7h2hSa6ZIgPnrQM1SeZK7W6m7rAfQsE="; + sha256 = "sha256-IHDpY1lqJCG5r47KQ73sET7hEHqvfMtHXU03Z6iFaIc="; }; configureFlags = [ @@ -21,7 +25,8 @@ stdenv.mkDerivation rec { buildInputs = [ expat ncurses ] ++ lib.optionals x11Support [ cairo libX11 ] - ++ lib.optionals stdenv.isLinux [ numactl ]; + ++ lib.optionals stdenv.isLinux [ numactl ] + ++ lib.optional enableCuda cudaPackages.cudatoolkit; # Since `libpci' appears in `hwloc.pc', it must be propagated. propagatedBuildInputs = lib.optional stdenv.isLinux pciutils; diff --git a/third_party/nixpkgs/pkgs/development/libraries/icu/63.nix b/third_party/nixpkgs/pkgs/development/libraries/icu/63.nix index 07684d8db8..19838763f5 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/icu/63.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/icu/63.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, fetchpatch, fixDarwinDylibNames, nativeBuildRoot }: +{ stdenv, lib, fetchurl, fetchpatch, fixDarwinDylibNames, nativeBuildRoot, buildRootOnly ? false }: import ./base.nix { version = "63.1"; @@ -11,4 +11,4 @@ import ./base.nix { }) ]; patchFlags = [ "-p3" ]; -} { inherit stdenv lib fetchurl fixDarwinDylibNames nativeBuildRoot; } +} { inherit stdenv lib fetchurl fixDarwinDylibNames nativeBuildRoot buildRootOnly; } diff --git a/third_party/nixpkgs/pkgs/development/libraries/intel-gmmlib/default.nix b/third_party/nixpkgs/pkgs/development/libraries/intel-gmmlib/default.nix index addd77288b..2d10795f24 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/intel-gmmlib/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/intel-gmmlib/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "intel-gmmlib"; - version = "22.3.1"; + version = "22.3.2"; src = fetchFromGitHub { owner = "intel"; repo = "gmmlib"; rev = "intel-gmmlib-${version}"; - sha256 = "sha256-bk1yBxMrPkFnPcV5uvEmbf3X2WG6iJNbD1WNxoOSnA8="; + sha256 = "sha256-bn7Y+yre/9EkECMaYs2CR+OTZRG5pRd6LjnZD9jXvUM="; }; nativeBuildInputs = [ cmake ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/itk/5.2.x.nix b/third_party/nixpkgs/pkgs/development/libraries/itk/5.2.x.nix new file mode 100644 index 0000000000..e50f2bbca4 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/libraries/itk/5.2.x.nix @@ -0,0 +1,5 @@ +import ./generic.nix rec { + version = "5.2.1"; + rev = "v${version}"; + sourceSha256 = "sha256-KaVe9FMGm4ZVMpwAT12fA67T0qZS3ZueiI8z85+xSwE="; +} diff --git a/third_party/nixpkgs/pkgs/development/libraries/itk/5.x.nix b/third_party/nixpkgs/pkgs/development/libraries/itk/5.x.nix index e50f2bbca4..765b464e46 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/itk/5.x.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/itk/5.x.nix @@ -1,5 +1,5 @@ import ./generic.nix rec { - version = "5.2.1"; + version = "5.3.0"; rev = "v${version}"; - sourceSha256 = "sha256-KaVe9FMGm4ZVMpwAT12fA67T0qZS3ZueiI8z85+xSwE="; + sourceSha256 = "sha256-+qCd8Jzpl5fEPTUpLyjjFBkfgCn3+Lf4pi8QnjCwofs="; } diff --git a/third_party/nixpkgs/pkgs/development/libraries/itk/generic.nix b/third_party/nixpkgs/pkgs/development/libraries/itk/generic.nix index 0d742b393b..0408aed50a 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/itk/generic.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/itk/generic.nix @@ -32,6 +32,8 @@ stdenv.mkDerivation rec { substituteInPlace CMake/ITKSetStandardCompilerFlags.cmake \ --replace "-march=corei7" "" \ --replace "-mtune=native" "" + substituteInPlace Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg/src/lib/openjp2/libopenjp2.pc.cmake.in \ + --replace "@OPENJPEG_INSTALL_LIB_DIR@" "@OPENJPEG_INSTALL_FULL_LIB_DIR@" ln -sr ${itkGenericLabelInterpolatorSrc} Modules/External/ITKGenericLabelInterpolator ln -sr ${itkAdaptiveDenoisingSrc} Modules/External/ITKAdaptiveDenoising ''; diff --git a/third_party/nixpkgs/pkgs/development/libraries/itk/unstable.nix b/third_party/nixpkgs/pkgs/development/libraries/itk/unstable.nix deleted file mode 100644 index bb64d4afca..0000000000 --- a/third_party/nixpkgs/pkgs/development/libraries/itk/unstable.nix +++ /dev/null @@ -1,5 +0,0 @@ -import ./generic.nix { - version = "unstable-2022-07-02"; - rev = "5e7aea957c82b67d4364b2b88999805616e3b01d"; - sourceSha256 = "sha256-tjkoaHCuVdvgE6X+7Kb8mt9oxINWs4R0xD9cxdEeYKk="; -} diff --git a/third_party/nixpkgs/pkgs/development/libraries/java/jffi/default.nix b/third_party/nixpkgs/pkgs/development/libraries/java/jffi/default.nix index ef1445da99..aa130bc433 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/java/jffi/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/java/jffi/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "jffi"; - version = "1.3.9"; + version = "1.3.10"; src = fetchFromGitHub { owner = "jnr"; repo = "jffi"; rev = "jffi-${version}"; - sha256 = "sha256-VjZYhMbad+AesANG06umRzqMWj+Ebzu59TYK7Tm/bFo="; + sha256 = "sha256-2Y0l1bDr/f3vxwRjDX62xeC5pUmIbk4XH5prh8c91As="; }; nativeBuildInputs = [ jdk ant texinfo pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/jellyfin-ffmpeg/default.nix b/third_party/nixpkgs/pkgs/development/libraries/jellyfin-ffmpeg/default.nix index 04372e647e..b568d903de 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/jellyfin-ffmpeg/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/jellyfin-ffmpeg/default.nix @@ -1,5 +1,6 @@ { ffmpeg_5-full , nv-codec-headers-11 +, chromaprint , fetchFromGitHub , lib }: @@ -17,8 +18,12 @@ sha256 = "sha256-2mSixlrTgAVD2ZRGoi1+UEbhba7QEVvKmigwC9dLk2g="; }; + buildInputs = old.buildInputs ++ [ chromaprint ]; + configureFlags = old.configureFlags ++ [ + "--extra-version=Jellyfin" "--disable-ptx-compression" # https://github.com/jellyfin/jellyfin/issues/7944#issuecomment-1156880067 + "--enable-chromaprint" ]; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/libraries/khronos-ocl-icd-loader/default.nix b/third_party/nixpkgs/pkgs/development/libraries/khronos-ocl-icd-loader/default.nix index 8ff7b93324..37c007db20 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/khronos-ocl-icd-loader/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/khronos-ocl-icd-loader/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { buildInputs = [ opencl-headers ]; meta = with lib; { - description = "Offical Khronos OpenCL ICD Loader"; + description = "Official Khronos OpenCL ICD Loader"; homepage = "https://github.com/KhronosGroup/OpenCL-ICD-Loader"; license = licenses.asl20; platforms = platforms.linux; diff --git a/third_party/nixpkgs/pkgs/development/libraries/kirigami-addons/default.nix b/third_party/nixpkgs/pkgs/development/libraries/kirigami-addons/default.nix index 3ccde40b75..fec795c574 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/kirigami-addons/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/kirigami-addons/default.nix @@ -12,14 +12,14 @@ mkDerivation rec { pname = "kirigami-addons"; - version = "0.4"; + version = "0.6"; src = fetchFromGitLab { domain = "invent.kde.org"; owner = "libraries"; repo = pname; rev = "v${version}"; - sha256 = "sha256-3RPOab10kLcMVBngcRILDXbhOBI/BhjkMZqWVC0IPlM="; + sha256 = "sha256-RUu/0O/YRVRsRYeASfW8UQ/Ql2VbLOdVySVo9/hAmLw="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/libraries/level-zero/default.nix b/third_party/nixpkgs/pkgs/development/libraries/level-zero/default.nix index 592260c0a4..85a803c010 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/level-zero/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/level-zero/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "level-zero"; - version = "1.8.8"; + version = "1.8.12"; src = fetchFromGitHub { owner = "oneapi-src"; repo = "level-zero"; rev = "v${version}"; - sha256 = "sha256-hfbTgEbvrhWkZEi8Km7KaxJBAc9X1kA/T2DLooKa7KQ="; + sha256 = "sha256-87fnucPg8JygYo3QSuA6ll0acbHQvmWzNLEp4dqkAH8="; }; nativeBuildInputs = [ cmake addOpenGLRunpath ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/libax25/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libax25/default.nix new file mode 100644 index 0000000000..7388a728f5 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/libraries/libax25/default.nix @@ -0,0 +1,31 @@ +{ lib +, stdenv +, fetchurl +, glibc +}: + +stdenv.mkDerivation rec { + pname = "libax25"; + version = "0.0.12-rc5"; + + buildInputs = [ glibc ] ++ lib.optional stdenv.hostPlatform.isStatic [ glibc.static ]; + + # Due to recent unsolvable administrative domain problems with linux-ax25.org, + # the new domain is linux-ax25.in-berlin.de + src = fetchurl { + url = "https://linux-ax25.in-berlin.de/pub/ax25-lib/libax25-${version}.tar.gz"; + hash = "sha256-vxV5GVDOHr38N/512ArZpnZ+a7FTbXBNpoSJkc9DI98="; + }; + + configureFlags = [ "--sysconfdir=/etc" ]; + + LDFLAGS = lib.optionals stdenv.hostPlatform.isStatic [ "-static-libgcc" "-static" ]; + + meta = with lib; { + description = "AX.25 library for hamradio applications"; + homepage = "https://linux-ax25.in-berlin.de/wiki/Main_Page"; + license = licenses.lgpl21Only; + maintainers = with maintainers; [ sarcasticadmin ]; + platforms = platforms.linux; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/libraries/libcommuni/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libcommuni/default.nix index dd5472849f..f7d064e0de 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libcommuni/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libcommuni/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { dontUseQmakeConfigure = true; configureFlags = [ "-config" "release" ] - # Build mixes up dylibs/frameworks if one is not explicitely specified. + # Build mixes up dylibs/frameworks if one is not explicitly specified. ++ lib.optionals stdenv.isDarwin [ "-config" "qt_framework" ]; dontWrapQtApps = true; diff --git a/third_party/nixpkgs/pkgs/development/libraries/libcouchbase/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libcouchbase/default.nix index a1d75d65aa..50fc23aa5f 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libcouchbase/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libcouchbase/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "libcouchbase"; - version = "3.3.2"; + version = "3.3.3"; src = fetchFromGitHub { owner = "couchbase"; repo = "libcouchbase"; rev = version; - sha256 = "sha256-nGZHAp2ajGHNHjfKTAQrQSlBmyufzP9V8/vRO6S8Ui0="; + sha256 = "sha256-kg/dVarfmDibZXLGY4zXfReNQ1DC4T/3g54g8zxNmEs="; }; cmakeFlags = [ "-DLCB_NO_MOCK=ON" ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/libdeltachat/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libdeltachat/default.nix index 23f2a1d0d7..0f4bed9c39 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libdeltachat/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libdeltachat/default.nix @@ -17,13 +17,13 @@ stdenv.mkDerivation rec { pname = "libdeltachat"; - version = "1.102.0"; + version = "1.104.0"; src = fetchFromGitHub { owner = "deltachat"; repo = "deltachat-core-rust"; rev = version; - hash = "sha256-xw/lUNs39nkBrydpcgUBL3j6XrZFafKslxx6zUiElWw="; + hash = "sha256-+FQ6XE+CtvSNSgpEr8h0mcr9DCC6TvGgLrYGdw0Ve2o="; }; patches = [ @@ -33,7 +33,7 @@ stdenv.mkDerivation rec { cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-CiqYKFABHcFSjYUH/qop1xWCoygQJajI7nhv04ElD10="; + hash = "sha256-c3tt+nYZksI/VhJk4bNHu9ZXeDTaA2aLAQo1BmuF+2g="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/libraries/libdigidocpp/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libdigidocpp/default.nix index 7d34388aea..21da1a917b 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libdigidocpp/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libdigidocpp/default.nix @@ -2,12 +2,12 @@ , xercesc, xml-security-c, pkg-config, xsd, zlib, xalanc, xxd }: stdenv.mkDerivation rec { - version = "3.14.10"; + version = "3.14.11"; pname = "libdigidocpp"; src = fetchurl { url = "https://github.com/open-eid/libdigidocpp/releases/download/v${version}/libdigidocpp-${version}.tar.gz"; - hash = "sha256-n/+R4ho1Qcft3YSKE12oxZjbFHAsUDwoLFNuk5GXf5c="; + hash = "sha256-5QYKHwRB5nck5yqukX/UA+M3jFlBvkQ/ekB7JFIY5tI="; }; nativeBuildInputs = [ cmake pkg-config xxd ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/libextractor/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libextractor/default.nix index 29762e231f..3df4a8f91e 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libextractor/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libextractor/default.nix @@ -1,7 +1,7 @@ { fetchurl, lib, stdenv, substituteAll , libtool, gettext, zlib, bzip2, flac, libvorbis , exiv2, libgsf, rpm, pkg-config -, gstreamerSupport ? true, gst_all_1 ? null +, gstreamerSupport ? true, gst_all_1 # ^ Needed e.g. for proper id3 and FLAC support. # Set to `false` to decrease package closure size by about 87 MB (53%). , gstPlugins ? (gst: [ gst.gst-plugins-base gst.gst-plugins-good ]) @@ -12,12 +12,9 @@ # wrapProgram $out/bin/extract --prefix GST_PLUGIN_SYSTEM_PATH_1_0 : "$GST_PLUGIN_SYSTEM_PATH_1_0" # ''; # See also . -, gtkSupport ? true, glib ? null, gtk3 ? null -, videoSupport ? true, ffmpeg ? null, libmpeg2 ? null}: - -assert gstreamerSupport -> gst_all_1 != null && builtins.isList (gstPlugins gst_all_1); -assert gtkSupport -> glib != null && gtk3 != null; -assert videoSupport -> ffmpeg != null && libmpeg2 != null; +, gtkSupport ? true, glib, gtk3 +, videoSupport ? true, ffmpeg, libmpeg2 +}: stdenv.mkDerivation rec { pname = "libextractor"; diff --git a/third_party/nixpkgs/pkgs/development/libraries/libffi/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libffi/default.nix index 02721ff8d9..474d0e953e 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libffi/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libffi/default.nix @@ -54,9 +54,7 @@ stdenv.mkDerivation rec { checkInputs = [ dejagnu ]; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/libraries/libqalculate/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libqalculate/default.nix index 9c5d295e6e..c097922be9 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libqalculate/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libqalculate/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "libqalculate"; - version = "4.4.0"; + version = "4.5.0"; src = fetchFromGitHub { owner = "qalculate"; repo = "libqalculate"; rev = "v${version}"; - sha256 = "sha256-/TgsGlO8RJ3L+2425odye365QqBzCHrr1Z4zUj+Ld8I="; + sha256 = "sha256-EOr5FtQnF5N96s9Aeh5sMV3vwXQgpqFSvrYVGmNkWrs="; }; outputs = [ "out" "dev" "doc" ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/libredwg/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libredwg/default.nix index a3b43e9377..155af3f74f 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libredwg/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libredwg/default.nix @@ -59,7 +59,6 @@ stdenv.mkDerivation rec { checkInputs = lib.optionals enablePython [ libxml2 libxml2.dev ]; meta = with lib; { - broken = stdenv.isDarwin && stdenv.isAarch64; description = "Free implementation of the DWG file format"; homepage = "https://savannah.gnu.org/projects/libredwg/"; maintainers = with maintainers; [ tweber ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/libseccomp/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libseccomp/default.nix index 7cea80696a..c861673305 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libseccomp/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libseccomp/default.nix @@ -32,9 +32,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/libraries/libshumate/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libshumate/default.nix index 2d7e6c5fb7..4164ef4a46 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libshumate/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libshumate/default.nix @@ -61,7 +61,10 @@ stdenv.mkDerivation rec { checkPhase = '' runHook preCheck - HOME=$TMPDIR xvfb-run meson test --print-errorlogs + env \ + HOME="$TMPDIR" \ + GTK_A11Y=none \ + xvfb-run meson test --print-errorlogs runHook postCheck ''; diff --git a/third_party/nixpkgs/pkgs/development/libraries/libsidplayfp/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libsidplayfp/default.nix index 991b203897..7ff3974fdb 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libsidplayfp/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libsidplayfp/default.nix @@ -60,9 +60,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/libraries/libsignon-glib/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libsignon-glib/default.nix index f20f80c284..9f0496262f 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libsignon-glib/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libsignon-glib/default.nix @@ -43,9 +43,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/libraries/libva/1.nix b/third_party/nixpkgs/pkgs/development/libraries/libva/1.nix index 5197420783..b3ad61d4b2 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libva/1.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libva/1.nix @@ -8,6 +8,7 @@ , libdrm , libXfixes , wayland +, wayland-scanner , libffi , libGL , mesa @@ -28,7 +29,7 @@ stdenv.mkDerivation rec { outputs = [ "dev" "out" ]; - nativeBuildInputs = [ autoreconfHook pkg-config ]; + nativeBuildInputs = [ autoreconfHook pkg-config wayland-scanner ]; buildInputs = [ libdrm ] ++ lib.optionals (!minimal) [ libva1-minimal libX11 libXext libXfixes wayland libffi libGL ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/libva/utils.nix b/third_party/nixpkgs/pkgs/development/libraries/libva/utils.nix index ce060c66a3..85a2b18352 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libva/utils.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libva/utils.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "libva-utils"; - version = "2.15.0"; + version = "2.16.0"; src = fetchFromGitHub { owner = "intel"; repo = "libva-utils"; rev = version; - sha256 = "sha256-oElqJqOa/Q+2NE6gZS2tJnFJfalP6HsuUduk8cbuy84="; + sha256 = "sha256-6gjOheppHGTHUoT+pVJ6Tfgj9qDB+/MjaI3Win4ULRM="; }; nativeBuildInputs = [ meson ninja pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/libvarlink/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libvarlink/default.nix index 6bd397ff0d..9e4b96a9d7 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libvarlink/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libvarlink/default.nix @@ -36,9 +36,7 @@ stdenv.mkDerivation (finalAttrs: { doCheck = true; passthru = { - updateScript = nix-update-script { - attrPath = finalAttrs.pname; - }; + updateScript = nix-update-script { }; tests = { version = testers.testVersion { package = finalAttrs.finalPackage; diff --git a/third_party/nixpkgs/pkgs/development/libraries/libvirt/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libvirt/default.nix index 80c4393a96..8f4479a763 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libvirt/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libvirt/default.nix @@ -341,6 +341,7 @@ stdenv.mkDerivation rec { substituteInPlace $out/libexec/libvirt-guests.sh \ --replace 'ON_BOOT="start"' 'ON_BOOT=''${ON_BOOT:-start}' \ --replace 'ON_SHUTDOWN="suspend"' 'ON_SHUTDOWN=''${ON_SHUTDOWN:-suspend}' \ + --replace 'PARALLEL_SHUTDOWN=0' 'PARALLEL_SHUTDOWN=''${PARALLEL_SHUTDOWN:-0}' \ --replace "$out/bin" '${gettext}/bin' \ --replace 'lock/subsys' 'lock' \ --replace 'gettext.sh' 'gettext.sh diff --git a/third_party/nixpkgs/pkgs/development/libraries/libvncserver/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libvncserver/default.nix index c111a81b0c..7f3f945d6f 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libvncserver/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libvncserver/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { pname = "libvncserver"; - version = "0.9.13"; + version = "0.9.14"; outputs = [ "out" "dev" ]; @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { owner = "LibVNC"; repo = "libvncserver"; rev = "LibVNCServer-${version}"; - sha256 = "sha256-gQT/M2u4nWQ0MfO2gWAqY0ZJc7V9eGczGzcsxKmG4H8="; + sha256 = "sha256-kqVZeCTp+Z6BtB6nzkwmtkJ4wtmjlSQBg05lD02cVvQ="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/libraries/libxklavier/default.nix b/third_party/nixpkgs/pkgs/development/libraries/libxklavier/default.nix index cdce45e11f..3fa295279f 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/libxklavier/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/libxklavier/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchgit, autoreconfHook, pkg-config, gtk-doc, xkeyboard_config, libxml2, xorg, docbook_xsl +{ lib, stdenv, fetchgit, fetchpatch, autoreconfHook, pkg-config, gtk-doc, xkeyboard_config, libxml2, xorg, docbook_xsl , glib, isocodes, gobject-introspection , withDoc ? (stdenv.buildPlatform == stdenv.hostPlatform) }: @@ -13,7 +13,14 @@ stdenv.mkDerivation rec { sha256 = "1w1x5mrgly2ldiw3q2r6y620zgd89gk7n90ja46775lhaswxzv7a"; }; - patches = [ ./honor-XKB_CONFIG_ROOT.patch ]; + patches = [ + ./honor-XKB_CONFIG_ROOT.patch + ] ++ lib.optionals stdenv.isDarwin [ + (fetchpatch { + url = "https://gitlab.freedesktop.org/archived-projects/libxklavier/-/commit/1387c21a788ec1ea203c8392ea1460fc29d83f70.patch"; + sha256 = "sha256-fyWu7sVfDv/ozjhLSLCVsv+iNFawWgJqHUsQHHSkQn4="; + }) + ]; outputs = [ "out" "dev" ] ++ lib.optionals withDoc [ "devdoc" ]; @@ -38,6 +45,6 @@ stdenv.mkDerivation rec { description = "Library providing high-level API for X Keyboard Extension known as XKB"; homepage = "http://freedesktop.org/wiki/Software/LibXklavier"; license = licenses.lgpl2Plus; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/third_party/nixpkgs/pkgs/development/libraries/lightning/default.nix b/third_party/nixpkgs/pkgs/development/libraries/lightning/default.nix index 5f8c71fa6a..44b58a9d81 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/lightning/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/lightning/default.nix @@ -1,32 +1,34 @@ -{ lib, stdenv, fetchurl, libopcodes }: - -with lib; -stdenv.mkDerivation rec { +{ lib +, stdenv +, fetchurl +, libopcodes +}: +stdenv.mkDerivation (finalAttrs: { pname = "lightning"; - version = "2.1.3"; + version = "2.2.0"; src = fetchurl { - url = "mirror://gnu/lightning/${pname}-${version}.tar.gz"; - sha256 = "1jgxbq2cm51dzi3zhz38mmgwdcgs328mfl8iviw8dxn6dn36p1gd"; + url = "mirror://gnu/lightning/${finalAttrs.pname}-${finalAttrs.version}.tar.gz"; + hash = "sha256-TjmE/xzPC6MKmFIR1A/FwGsl8BTr3z2A0P49DIDdfA4="; }; checkInputs = [ libopcodes ]; doCheck = true; - meta = { + meta = with lib; { homepage = "https://www.gnu.org/software/lightning/"; description = "Run-time code generation library"; longDescription = '' - GNU lightning is a library that generates assembly language code - at run-time; it is very fast, making it ideal for Just-In-Time - compilers, and it abstracts over the target CPU, as it exposes - to the clients a standardized RISC instruction set inspired by - the MIPS and SPARC chips. + GNU lightning is a library that generates assembly language code at + run-time; it is very fast, making it ideal for Just-In-Time compilers, and + it abstracts over the target CPU, as it exposes to the clients a + standardized RISC instruction set inspired by the MIPS and SPARC chips. ''; - maintainers = [ maintainers.AndersonTorres ]; + maintainers = with maintainers; [ AndersonTorres ]; license = licenses.lgpl3Plus; - platforms = lib.platforms.all; + platforms = platforms.unix; + broken = stdenv.isDarwin; # failing tests }; -} +}) diff --git a/third_party/nixpkgs/pkgs/development/libraries/matio/default.nix b/third_party/nixpkgs/pkgs/development/libraries/matio/default.nix index c92c712e15..a1aee4dd8f 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/matio/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/matio/default.nix @@ -1,10 +1,10 @@ { lib, stdenv, fetchurl }: stdenv.mkDerivation rec { pname = "matio"; - version = "1.5.22"; + version = "1.5.23"; src = fetchurl { url = "mirror://sourceforge/matio/${pname}-${version}.tar.gz"; - sha256 = "sha256-gMPR4iLhFXaLV7feZAo30O58t6O9A52z6pQecfxSBMM="; + sha256 = "sha256-n5Hq5mHfRupTwxGhstz/cgUQlbAjxhLXy/wJQGyfTW4="; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/libraries/maui-core/default.nix b/third_party/nixpkgs/pkgs/development/libraries/maui-core/default.nix new file mode 100644 index 0000000000..4b9491ed9c --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/libraries/maui-core/default.nix @@ -0,0 +1,44 @@ +{ lib +, pkgs +, mkDerivation +, libcanberra +, pulseaudio +, fetchFromGitHub +, cmake +, extra-cmake-modules +, kio +, kidletime +}: + +mkDerivation rec { + pname = "maui-core"; + version = "0.5.6"; + + src = fetchFromGitHub { + owner = "Nitrux"; + repo = pname; + rev = "refs/tags/v${version}"; + sha256 = "sha256-58ja76N7LrJ0f/SsNMYr7Z9hdW60PwsNlTkHQ+NEdUM="; + }; + + nativeBuildInputs = [ + cmake + extra-cmake-modules + ]; + + buildInputs = [ + kidletime + kio + libcanberra + pulseaudio + ]; + + meta = with lib; { + description = "Core libraries to manage the desktop to be shared between Maui Settings and Cask"; + homepage = "https://github.com/Nitrux/maui-core"; + # Missing license information https://github.com/Nitrux/maui-core/issues/1 + license = licenses.unfree; + maintainers = with maintainers; [ onny ]; + }; + +} diff --git a/third_party/nixpkgs/pkgs/development/libraries/mbedtls/generic.nix b/third_party/nixpkgs/pkgs/development/libraries/mbedtls/generic.nix index 3383d3f8cc..adc46adb75 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/mbedtls/generic.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/mbedtls/generic.nix @@ -33,7 +33,7 @@ stdenv.mkDerivation rec { ''; cmakeFlags = [ - "-DUSE_SHARED_MBEDTLS_LIBRARY=on" + "-DUSE_SHARED_MBEDTLS_LIBRARY=${if stdenv.hostPlatform.isStatic then "off" else "on"}" # Avoid a dependency on jsonschema and jinja2 by not generating source code # using python. In releases, these generated files are already present in diff --git a/third_party/nixpkgs/pkgs/development/libraries/mimalloc/default.nix b/third_party/nixpkgs/pkgs/development/libraries/mimalloc/default.nix index 3a15f6b1aa..59841e0750 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/mimalloc/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/mimalloc/default.nix @@ -7,13 +7,13 @@ let in stdenv.mkDerivation rec { pname = "mimalloc"; - version = "2.0.7"; + version = "2.0.9"; src = fetchFromGitHub { owner = "microsoft"; repo = pname; rev = "v${version}"; - sha256 = "sha256-h3+awCdlZaGCkavBeQfJsKgOZX4MHB3quPIfTlj6pDw="; + sha256 = "sha256-0gX0rEOWT6Lp5AyRyrK5GPTBvAqc5SxSaNJOc5GIgKc="; }; doCheck = true; diff --git a/third_party/nixpkgs/pkgs/development/libraries/mygui/default.nix b/third_party/nixpkgs/pkgs/development/libraries/mygui/default.nix index 740c1fec88..b49f9ca6e2 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/mygui/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/mygui/default.nix @@ -1,9 +1,24 @@ -{ lib, stdenv, fetchFromGitHub, libX11, cmake, ois, freetype, libuuid, - boost, pkg-config, withOgre ? false, ogre ? null, libGL, libGLU ? null } : +{ lib +, stdenv +, fetchFromGitHub +, cmake +, pkg-config +, boost +, freetype +, libuuid +, ois +, withOgre ? false +, ogre +, libGL +, libGLU +, libX11 +, Cocoa +}: let renderSystem = if withOgre then "3" else "4"; -in stdenv.mkDerivation rec { +in +stdenv.mkDerivation rec { pname = "mygui"; version = "3.4.0"; @@ -14,17 +29,42 @@ in stdenv.mkDerivation rec { sha256 = "0a4zi8w18pjj813n7kmxldl1d9r1jp0iyhkw7pbqgl8f7qaq994w"; }; - nativeBuildInputs = [ cmake pkg-config ]; - buildInputs = [ libX11 ois freetype libuuid boost ] - ++ (if withOgre then [ ogre ] else [ libGL libGLU ]); + patches = [ + ./disable-framework.patch + ]; + + nativeBuildInputs = [ + cmake + pkg-config + ]; + + buildInputs = [ + boost + freetype + libuuid + ois + ] ++ lib.optionals withOgre [ + ogre + ] ++ lib.optionals (!withOgre && stdenv.isLinux) [ + libGL + libGLU + ] ++ lib.optionals stdenv.isLinux [ + libX11 + ] ++ lib.optionals stdenv.isDarwin [ + Cocoa + ]; # Tools are disabled due to compilation failures. - cmakeFlags = [ "-DMYGUI_BUILD_TOOLS=OFF" "-DMYGUI_BUILD_DEMOS=OFF" "-DMYGUI_RENDERSYSTEM=${renderSystem}" ]; + cmakeFlags = [ + "-DMYGUI_BUILD_TOOLS=OFF" + "-DMYGUI_BUILD_DEMOS=OFF" + "-DMYGUI_RENDERSYSTEM=${renderSystem}" + ]; meta = with lib; { homepage = "http://mygui.info/"; description = "Library for creating GUIs for games and 3D applications"; license = licenses.lgpl3Plus; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/third_party/nixpkgs/pkgs/development/libraries/mygui/disable-framework.patch b/third_party/nixpkgs/pkgs/development/libraries/mygui/disable-framework.patch new file mode 100644 index 0000000000..502e58ac36 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/libraries/mygui/disable-framework.patch @@ -0,0 +1,19 @@ +diff --git a/CMake/Utils/MyGUIConfigTargets.cmake b/CMake/Utils/MyGUIConfigTargets.cmake +index bba3f91..8f4f351 100644 +--- a/CMake/Utils/MyGUIConfigTargets.cmake ++++ b/CMake/Utils/MyGUIConfigTargets.cmake +@@ -477,14 +477,6 @@ function(mygui_config_lib PROJECTNAME) + if (CMAKE_COMPILER_IS_GNUCXX OR CMAKE_CXX_COMPILER_ID MATCHES "Clang" OR CMAKE_CXX_COMPILER_ID MATCHES "Intel") + # add GCC visibility flags to shared library build + set_target_properties(${PROJECTNAME} PROPERTIES COMPILE_FLAGS "${MYGUI_GCC_VISIBILITY_FLAGS}") +- if (APPLE) +- # deal with Mac OS X's framework system +- set_target_properties(${PROJECTNAME} PROPERTIES FRAMEWORK TRUE) +- set_target_properties(${PROJECTNAME} PROPERTIES PUBLIC_HEADER "${${PROJECTNAME}_HEADERS}") +- set_target_properties(${PROJECTNAME} PROPERTIES OUTPUT_NAME ${PROJECTNAME}) +- set_target_properties(${PROJECTNAME} PROPERTIES BUILD_WITH_INSTALL_RPATH TRUE) +- set_target_properties(${PROJECTNAME} PROPERTIES INSTALL_NAME_DIR "@executable_path/../Frameworks") +- endif (APPLE) + endif () + endif (MYGUI_STATIC) + mygui_install_target(${PROJECTNAME} "") diff --git a/third_party/nixpkgs/pkgs/development/libraries/ndn-cxx/default.nix b/third_party/nixpkgs/pkgs/development/libraries/ndn-cxx/default.nix index 410ede638c..ee05d2606d 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/ndn-cxx/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/ndn-cxx/default.nix @@ -43,7 +43,7 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://named-data.net/"; - description = "A Named Data Neworking (NDN) or Content Centric Networking (CCN) abstraction"; + description = "A Named Data Networking (NDN) or Content Centric Networking (CCN) abstraction"; longDescription = '' ndn-cxx is a C++ library, implementing Named Data Networking (NDN) primitives that can be used to implement various NDN applications. diff --git a/third_party/nixpkgs/pkgs/development/libraries/nghttp3/default.nix b/third_party/nixpkgs/pkgs/development/libraries/nghttp3/default.nix index 3638422bb0..f5c64a1d88 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/nghttp3/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/nghttp3/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "nghttp3"; - version = "0.7.1"; + version = "0.8.0"; src = fetchFromGitHub { owner = "ngtcp2"; repo = pname; rev = "v${version}"; - sha256 = "sha256-LSHhvRTzqpGJcyK3KoZZjbZVggXpgDEEVpp8gMoaE7U="; + sha256 = "sha256-Zexcfkf8Br3wduUpM3tcS68fEVO6reNxYSB3X3qUWKg="; }; outputs = [ "out" "dev" "doc" ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/ngtcp2/default.nix b/third_party/nixpkgs/pkgs/development/libraries/ngtcp2/default.nix index 0611bccbf4..9ecbbaa913 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/ngtcp2/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/ngtcp2/default.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation rec { pname = "ngtcp2"; - version = "0.11.0"; + version = "0.12.0"; src = fetchFromGitHub { owner = "ngtcp2"; repo = pname; rev = "v${version}"; - sha256 = "sha256-u6orYF/VzXpcUdCitPawoet3KAhXlTQ2giR5eTQkrLY="; + sha256 = "sha256-OnGzAUfIop/3/0qAAm5rgTlpCdZ/1fwWPJ/KLfGUy8U="; }; outputs = [ "out" "dev" "doc" ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/paho-mqtt-c/default.nix b/third_party/nixpkgs/pkgs/development/libraries/paho-mqtt-c/default.nix index 37a829088d..836f9fe625 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/paho-mqtt-c/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/paho-mqtt-c/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "paho.mqtt.c"; - version = "1.3.11"; + version = "1.3.12"; src = fetchFromGitHub { owner = "eclipse"; repo = "paho.mqtt.c"; rev = "v${version}"; - hash = "sha256-TGCWA9tOOx0rCb/XQWqLFbXb9gOyGS8u6o9fvSRS6xI="; + hash = "sha256-LxyMbMA6Antt8Uu4jCvmvYT9+Vm4ZUVz4XXFdd0O7Kk="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/libraries/pdal/default.nix b/third_party/nixpkgs/pkgs/development/libraries/pdal/default.nix index 7e903a3d6b..16f9fb2e1a 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/pdal/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/pdal/default.nix @@ -11,6 +11,7 @@ , enableE57 ? lib.meta.availableOn stdenv.hostPlatform libe57format , libe57format , libgeotiff +, libtiff , libxml2 , postgresql , tiledb @@ -21,13 +22,13 @@ stdenv.mkDerivation rec { pname = "pdal"; - version = "2.4.0"; + version = "2.4.3"; src = fetchFromGitHub { owner = "PDAL"; repo = "PDAL"; rev = version; - sha256 = "sha256-w9Fu4Op6OdaxdvOUM+glpJUEZq//EwRD2lqzYrMXk8w="; + sha256 = "sha256-9TQlhuGSTnHsTlJos9Hwnyl1CxI0tXLZdqsaGdp6WIE="; }; nativeBuildInputs = [ @@ -42,6 +43,7 @@ stdenv.mkDerivation rec { hdf5-cpp LASzip libgeotiff + libtiff libxml2 postgresql tiledb diff --git a/third_party/nixpkgs/pkgs/development/libraries/physics/hepmc3/default.nix b/third_party/nixpkgs/pkgs/development/libraries/physics/hepmc3/default.nix index 999a5231c0..22e60b20ae 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/physics/hepmc3/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/physics/hepmc3/default.nix @@ -1,4 +1,11 @@ -{ lib, stdenv, fetchurl, cmake, coreutils, python, root }: +{ lib +, stdenv +, fetchurl +, cmake +, coreutils +, python +, root +}: let pythonVersion = with lib.versions; "${major python.version}${minor python.version}"; @@ -16,9 +23,14 @@ stdenv.mkDerivation rec { sha256 = "sha256-zQ91yA91VJxZzCqCns52Acd96Xyypat1eQysjh1YUDI="; }; - nativeBuildInputs = [ cmake ]; - buildInputs = [ root_py ] - ++ lib.optional withPython python; + nativeBuildInputs = [ + cmake + ]; + + buildInputs = [ + root_py + ] + ++ lib.optional withPython python; cmakeFlags = [ "-DHEPMC3_ENABLE_PYTHON=${if withPython then "ON" else "OFF"}" diff --git a/third_party/nixpkgs/pkgs/development/libraries/physics/lhapdf/default.nix b/third_party/nixpkgs/pkgs/development/libraries/physics/lhapdf/default.nix index c26aba6651..60b5a0b581 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/physics/lhapdf/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/physics/lhapdf/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "lhapdf"; - version = "6.5.2"; + version = "6.5.3"; src = fetchurl { url = "https://www.hepforge.org/archive/lhapdf/LHAPDF-${version}.tar.gz"; - sha256 = "sha256-YIonU0VeBnqZQLXBa8hqtsR+LHSbyd0ZeWmW60NSsv0="; + sha256 = "sha256-V0Nc1pXilwZdU+ab0pCQdlyTSTa2qXX/jFWXZvIjA1k="; }; # The Apple SDK only exports locale_t from xlocale.h whereas glibc diff --git a/third_party/nixpkgs/pkgs/development/libraries/physics/yoda/default.nix b/third_party/nixpkgs/pkgs/development/libraries/physics/yoda/default.nix index 5424ad7378..f1f4a5ed8c 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/physics/yoda/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/physics/yoda/default.nix @@ -1,19 +1,40 @@ -{ lib, stdenv, fetchurl, fetchpatch, python, root, makeWrapper, zlib, withRootSupport ? false }: +{ lib +, stdenv +, fetchurl +, fetchpatch +, python +, root +, makeWrapper +, zlib +, withRootSupport ? false +}: stdenv.mkDerivation rec { pname = "yoda"; - version = "1.9.6"; + version = "1.9.7"; src = fetchurl { url = "https://www.hepforge.org/archive/yoda/YODA-${version}.tar.bz2"; - hash = "sha256-IVI/ova2yPM0iVnzqUhzSpMMollR08kZC0Qk4Tc18qQ="; + hash = "sha256-jQe7BNy3k2SFhxihggNFLY2foAAp+pQjnq+oUpAyuP8="; }; - nativeBuildInputs = with python.pkgs; [ cython makeWrapper ]; - buildInputs = [ python ] - ++ (with python.pkgs; [ numpy matplotlib ]) - ++ lib.optional withRootSupport root; - propagatedBuildInputs = [ zlib ]; + nativeBuildInputs = with python.pkgs; [ + cython + makeWrapper + ]; + + buildInputs = [ + python + ] ++ (with python.pkgs; [ + numpy + matplotlib + ]) ++ lib.optionals withRootSupport [ + root + ]; + + propagatedBuildInputs = [ + zlib + ]; enableParallelBuilding = true; @@ -31,13 +52,15 @@ stdenv.mkDerivation rec { hardeningDisable = [ "format" ]; doInstallCheck = true; + installCheckTarget = "check"; - meta = { + meta = with lib; { description = "Provides small set of data analysis (specifically histogramming) classes"; - license = lib.licenses.gpl3Only; + license = licenses.gpl3Only; homepage = "https://yoda.hepforge.org"; - platforms = lib.platforms.unix; - maintainers = with lib.maintainers; [ veprbl ]; + changelog = "https://gitlab.com/hepcedar/yoda/-/blob/yoda-${version}/ChangeLog"; + platforms = platforms.unix; + maintainers = with maintainers; [ veprbl ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/libraries/pipewire/wireplumber.nix b/third_party/nixpkgs/pkgs/development/libraries/pipewire/wireplumber.nix index 8ea1361c24..6502ff0903 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/pipewire/wireplumber.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/pipewire/wireplumber.nix @@ -71,9 +71,7 @@ stdenv.mkDerivation rec { "-Dsysconfdir=/etc" ]; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "A modular session / policy manager for PipeWire"; diff --git a/third_party/nixpkgs/pkgs/development/libraries/protobufc/default.nix b/third_party/nixpkgs/pkgs/development/libraries/protobufc/default.nix index 28c15f0ef4..f7cf765e15 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/protobufc/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/protobufc/default.nix @@ -1,5 +1,11 @@ -{ lib, stdenv, fetchFromGitHub -, autoreconfHook, pkg-config, protobuf, zlib +{ lib +, stdenv +, fetchFromGitHub +, autoreconfHook +, pkg-config +, protobuf +, zlib +, buildPackages }: stdenv.mkDerivation rec { @@ -17,11 +23,13 @@ stdenv.mkDerivation rec { buildInputs = [ protobuf zlib ]; + PROTOC = lib.getExe buildPackages.protobuf; + meta = with lib; { homepage = "https://github.com/protobuf-c/protobuf-c/"; description = "C bindings for Google's Protocol Buffers"; license = licenses.bsd2; platforms = platforms.all; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ nickcao ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/libraries/qgnomeplatform/default.nix b/third_party/nixpkgs/pkgs/development/libraries/qgnomeplatform/default.nix index cc8ddf43c0..7f03baba0f 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/qgnomeplatform/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/qgnomeplatform/default.nix @@ -50,9 +50,7 @@ mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/libraries/qt-5/modules/qtbase.nix b/third_party/nixpkgs/pkgs/development/libraries/qt-5/modules/qtbase.nix index db1367f6fb..0102c2fd1b 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/qt-5/modules/qtbase.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/qt-5/modules/qtbase.nix @@ -14,7 +14,7 @@ # optional dependencies , cups ? null, libmysqlclient ? null, postgresql ? null -, withGtk3 ? false, dconf ? null, gtk3 ? null +, withGtk3 ? false, dconf, gtk3 # options , libGLSupported ? !stdenv.isDarwin @@ -26,9 +26,6 @@ , decryptSslTraffic ? false }: -assert withGtk3 -> dconf != null; -assert withGtk3 -> gtk3 != null; - let compareVersion = v: builtins.compareVersions version v; qmakeCacheName = if compareVersion "5.12.4" < 0 then ".qmake.cache" else ".qmake.stash"; diff --git a/third_party/nixpkgs/pkgs/development/libraries/resolv_wrapper/default.nix b/third_party/nixpkgs/pkgs/development/libraries/resolv_wrapper/default.nix index c6669edbc1..58863d6e26 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/resolv_wrapper/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/resolv_wrapper/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "resolv_wrapper"; - version = "1.1.7"; + version = "1.1.8"; src = fetchurl { url = "mirror://samba/cwrap/resolv_wrapper-${version}.tar.gz"; - sha256 = "sha256-Rgrn/V5TSFvn3ZmlXFki8csWNrnoghmB1JrRZQfIoHQ="; + sha256 = "sha256-+8MPd9o+EuzU72bM9at34LdEkwzNiQYkBAgvkoqOwuA="; }; nativeBuildInputs = [ cmake pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/rocksdb/default.nix b/third_party/nixpkgs/pkgs/development/libraries/rocksdb/default.nix index f1d1afe5f0..233a69e57b 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/rocksdb/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/rocksdb/default.nix @@ -16,13 +16,13 @@ stdenv.mkDerivation rec { pname = "rocksdb"; - version = "7.7.3"; + version = "7.8.3"; src = fetchFromGitHub { owner = "facebook"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Np3HPTZYzyoPOKL0xgsLzcvOkceFiEQd+1nyGbg4BHo="; + sha256 = "sha256-HVLxLltOZ0e9BCekynjdc+f/fTS9vz15GZVKB77uDXo="; }; nativeBuildInputs = [ cmake ninja ]; @@ -31,6 +31,11 @@ stdenv.mkDerivation rec { buildInputs = lib.optional enableJemalloc jemalloc; + outputs = [ + "out" + "tools" + ]; + NIX_CFLAGS_COMPILE = lib.optionalString stdenv.cc.isGNU "-Wno-error=deprecated-copy -Wno-error=pessimizing-move" + lib.optionalString stdenv.cc.isClang "-Wno-error=unused-private-field -faligned-allocation"; @@ -41,6 +46,7 @@ stdenv.mkDerivation rec { "-DWITH_BENCHMARK_TOOLS=0" "-DWITH_TESTS=1" "-DWITH_TOOLS=0" + "-DWITH_CORE_TOOLS=1" "-DWITH_BZ2=1" "-DWITH_LZ4=1" "-DWITH_SNAPPY=1" @@ -57,6 +63,15 @@ stdenv.mkDerivation rec { # otherwise "cc1: error: -Wformat-security ignored without -Wformat [-Werror=format-security]" hardeningDisable = lib.optional stdenv.hostPlatform.isWindows "format"; + preInstall = '' + mkdir -p $tools/bin + cp tools/{ldb,sst_dump} $tools/bin/ + '' + lib.optionalString stdenv.isDarwin '' + ls -1 $tools/bin/* | xargs -I{} install_name_tool -change "@rpath/librocksdb.7.dylib" $out/lib/librocksdb.dylib {} + '' + lib.optionalString (stdenv.isLinux && enableShared) '' + ls -1 $tools/bin/* | xargs -I{} patchelf --set-rpath $out/lib:${stdenv.cc.cc.lib}/lib {} + ''; + # Old version doesn't ship the .pc file, new version puts wrong paths in there. postFixup = '' if [ -f "$out"/lib/pkgconfig/rocksdb.pc ]; then diff --git a/third_party/nixpkgs/pkgs/development/libraries/science/benchmark/papi/default.nix b/third_party/nixpkgs/pkgs/development/libraries/science/benchmark/papi/default.nix index d4610d6041..06dc203aa2 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/science/benchmark/papi/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/science/benchmark/papi/default.nix @@ -3,12 +3,12 @@ }: stdenv.mkDerivation rec { - version = "6.0.0.1"; + version = "7.0.0"; pname = "papi"; src = fetchurl { url = "https://bitbucket.org/icl/papi/get/papi-${lib.replaceStrings ["."] ["-"] version}-t.tar.gz"; - sha256 = "1jd67yadyffzxwsqlylsi0bx8ishb0cgj2ziz1wdslaz6ylvyf9j"; + sha256 = "sha256-MxiOzfBxLmzsUg4jo2VHThyGE0/WYD3ZEBrq3WRjXGU="; }; setSourceRoot = '' diff --git a/third_party/nixpkgs/pkgs/development/libraries/science/biology/elastix/default.nix b/third_party/nixpkgs/pkgs/development/libraries/science/biology/elastix/default.nix index 84762414fe..4fd4c0c130 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/science/biology/elastix/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/science/biology/elastix/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, itk, python3, Cocoa }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, itk_5_2, python3, Cocoa }: stdenv.mkDerivation rec { pname = "elastix"; @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { ]; nativeBuildInputs = [ cmake python3 ]; - buildInputs = [ itk ] ++ lib.optionals stdenv.isDarwin [ Cocoa ]; + buildInputs = [ itk_5_2 ] ++ lib.optionals stdenv.isDarwin [ Cocoa ]; doCheck = !stdenv.isDarwin; # usual dynamic linker issues diff --git a/third_party/nixpkgs/pkgs/development/libraries/science/math/blas/default.nix b/third_party/nixpkgs/pkgs/development/libraries/science/math/blas/default.nix index 84a4486b6e..ed899a02aa 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/science/math/blas/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/science/math/blas/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchurl, cmake, gfortran -# Wether to build with ILP64 interface +# Whether to build with ILP64 interface , blas64 ? false }: diff --git a/third_party/nixpkgs/pkgs/development/libraries/science/math/libtorch/bin.nix b/third_party/nixpkgs/pkgs/development/libraries/science/math/libtorch/bin.nix index f9b454a6f1..34c1b7ad84 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/science/math/libtorch/bin.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/science/math/libtorch/bin.nix @@ -17,7 +17,7 @@ let # this derivation. However, we should ensure on version bumps # that the CUDA toolkit for `passthru.tests` is still # up-to-date. - version = "1.12.1"; + version = "1.13.1"; device = if cudaSupport then "cuda" else "cpu"; srcs = import ./binary-hashes.nix version; unavailable = throw "libtorch is not available for this platform"; @@ -93,6 +93,7 @@ in stdenv.mkDerivation { meta = with lib; { description = "C++ API of the PyTorch machine learning framework"; homepage = "https://pytorch.org/"; + sourceProvenance = with sourceTypes; [ binaryNativeCode ]; # Includes CUDA and Intel MKL, but redistributions of the binary are not limited. # https://docs.nvidia.com/cuda/eula/index.html # https://www.intel.com/content/www/us/en/developer/articles/license/onemkl-license-faq.html diff --git a/third_party/nixpkgs/pkgs/development/libraries/science/math/libtorch/binary-hashes.nix b/third_party/nixpkgs/pkgs/development/libraries/science/math/libtorch/binary-hashes.nix index 0b5b4d05c0..5d5c795b6e 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/science/math/libtorch/binary-hashes.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/science/math/libtorch/binary-hashes.nix @@ -1,36 +1,19 @@ version : builtins.getAttr version { - "1.10.0" = { + "1.13.1" = { x86_64-darwin-cpu = { - name = "libtorch-macos-1.10.0.zip"; - url = "https://download.pytorch.org/libtorch/cpu/libtorch-macos-1.10.0.zip"; - hash = "sha256-HSisxHs466c6XwvZEbkV/1kVNBzJOy3uVw9Bh497Vk8="; + name = "libtorch-macos-1.13.1.zip"; + url = "https://download.pytorch.org/libtorch/cpu/libtorch-macos-1.13.1.zip"; + hash = "sha256-2ITO1hO3qb4lEHO7xV6Dn6bhxI4Ia2TLulqs2LM7+vY="; }; x86_64-linux-cpu = { - name = "libtorch-cxx11-abi-shared-with-deps-1.10.0-cpu.zip"; - url = "https://download.pytorch.org/libtorch/cpu/libtorch-cxx11-abi-shared-with-deps-1.10.0%2Bcpu.zip"; - hash = "sha256-wAtA+AZx3HjaFbsrbyfkSXjYM0BP8H5HwCgyHbgJXJ0="; + name = "libtorch-cxx11-abi-shared-with-deps-1.13.1-cpu.zip"; + url = "https://download.pytorch.org/libtorch/cpu/libtorch-cxx11-abi-shared-with-deps-1.13.1%2Bcpu.zip"; + hash = "sha256-AXmlrtGNMVOYbQfvAQDUALlK1F0bMGNdm6RBtVuNvbo="; }; x86_64-linux-cuda = { - name = "libtorch-cxx11-abi-shared-with-deps-1.10.0-cu113.zip"; - url = "https://download.pytorch.org/libtorch/cu113/libtorch-cxx11-abi-shared-with-deps-1.10.0%2Bcu113.zip"; - hash = "sha256-jPylK4j0V8SEQ8cZU+O22P7kQ28wanIB0GkBzRGyTj8="; - }; - }; - "1.12.1" = { - x86_64-darwin-cpu = { - name = "libtorch-macos-1.12.1.zip"; - url = "https://download.pytorch.org/libtorch/cpu/libtorch-macos-1.12.1.zip"; - hash = "sha256-HSisxHs466c6XwvZEbkV/1kVNBzJOy3uVw9Bh497Vk8="; - }; - x86_64-linux-cpu = { - name = "libtorch-cxx11-abi-shared-with-deps-1.12.1-cpu.zip"; - url = "https://download.pytorch.org/libtorch/cpu/libtorch-cxx11-abi-shared-with-deps-1.12.1%2Bcpu.zip"; - hash = "sha256-bHhC0WTli9vDJv56TaT6iA/d8im9zRkK1TlBuqkh4Wg="; - }; - x86_64-linux-cuda = { - name = "libtorch-cxx11-abi-shared-with-deps-1.12.1-cu116.zip"; - url = "https://download.pytorch.org/libtorch/cu116/libtorch-cxx11-abi-shared-with-deps-1.12.1%2Bcu116.zip"; - hash = "sha256-YRcusDhrHYwIFOzt7vOuUlc11VyEUjIcBzjWEyi/874="; + name = "libtorch-cxx11-abi-shared-with-deps-1.13.1-cu116.zip"; + url = "https://download.pytorch.org/libtorch/cu116/libtorch-cxx11-abi-shared-with-deps-1.13.1%2Bcu116.zip"; + hash = "sha256-CujIDlE9VqUuhSJcvUO6IlDWjmjEt54sMAJ4ZRjuziw="; }; }; } diff --git a/third_party/nixpkgs/pkgs/development/libraries/science/math/libtorch/prefetch.sh b/third_party/nixpkgs/pkgs/development/libraries/science/math/libtorch/prefetch.sh index 26b24198e2..5c6d60ae8b 100755 --- a/third_party/nixpkgs/pkgs/development/libraries/science/math/libtorch/prefetch.sh +++ b/third_party/nixpkgs/pkgs/development/libraries/science/math/libtorch/prefetch.sh @@ -6,7 +6,7 @@ set -eou pipefail version=$1 bucket="https://download.pytorch.org/libtorch" -CUDA_VERSION=cu113 +CUDA_VERSION=cu116 url_and_key_list=( "x86_64-darwin-cpu $bucket/cpu/libtorch-macos-${version}.zip libtorch-macos-${version}.zip" diff --git a/third_party/nixpkgs/pkgs/development/libraries/science/math/mongoose/default.nix b/third_party/nixpkgs/pkgs/development/libraries/science/math/mongoose/default.nix index 4014973795..c7348c9e4a 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/science/math/mongoose/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/science/math/mongoose/default.nix @@ -1,5 +1,7 @@ -{ lib, stdenv +{ lib +, stdenv , fetchFromGitHub +, fetchpatch , cmake }: @@ -16,17 +18,27 @@ stdenv.mkDerivation rec { sha256 = "0ymwd4n8p8s0ndh1vcbmjcsm0x2cc2b7v3baww5y6as12873bcrh"; }; + patches = [ + # TODO: remove on next release + (fetchpatch { + name = "add-an-option-to-disable-coverage.patch"; + url = "https://github.com/ScottKolo/Mongoose/commit/39f4a0059ff7bad5bffa84369f31839214ac7877.patch"; + sha256 = "sha256-V8lCq22ixCCzLmKtW6bUL8cvJFZzdgYoA4BFs4xYd3c="; + }) + ]; + nativeBuildInputs = [ cmake ]; + # ld: file not found: libclang_rt.profile_osx.a + cmakeFlags = lib.optional (stdenv.isDarwin && stdenv.isAarch64) "-DENABLE_COVERAGE=OFF"; + meta = with lib; { description = "Graph Coarsening and Partitioning Library"; homepage = "https://github.com/ScottKolo/Mongoose"; - license = licenses.gpl3; - maintainers = with maintainers; []; + license = licenses.gpl3Only; + maintainers = with maintainers; [ wegank ]; platforms = with platforms; unix; - # never built on aarch64-darwin since first introduction in nixpkgs - broken = stdenv.isDarwin && stdenv.isAarch64; }; } diff --git a/third_party/nixpkgs/pkgs/development/libraries/science/math/zn_poly/default.nix b/third_party/nixpkgs/pkgs/development/libraries/science/math/zn_poly/default.nix index 3ec97e4a28..13344db9eb 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/science/math/zn_poly/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/science/math/zn_poly/default.nix @@ -35,7 +35,7 @@ stdenv.mkDerivation rec { makeFlags = [ "CC=${stdenv.cc.targetPrefix}cc" ]; - # Tuning (either autotuning or with hand-written paramters) is possible + # Tuning (either autotuning or with hand-written parameters) is possible # but not implemented here. # It seems buggy anyways (see homepage). buildFlags = [ "all" "${libbasename}${libext}" ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/sentry-native/default.nix b/third_party/nixpkgs/pkgs/development/libraries/sentry-native/default.nix index a4b096cee3..a2be472cc3 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/sentry-native/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/sentry-native/default.nix @@ -1,18 +1,33 @@ -{ lib, stdenv, fetchFromGitHub, cmake, curl, breakpad, pkg-config }: +{ lib +, stdenv +, fetchFromGitHub +, cmake +, curl +, breakpad +, pkg-config +}: stdenv.mkDerivation rec { pname = "sentry-native"; - version = "0.5.2"; + version = "0.5.3"; src = fetchFromGitHub { owner = "getsentry"; repo = "sentry-native"; rev = version; - sha256 = "sha256-zSu6jcls1PtoSZNp6VGnXrXS5ViiY6ZghPYWaVwPVtw="; + hash = "sha256-zeJGgtqEITK1fQtqFXwh+kpaS9Ky+RSY/uxZ2as8YyM="; }; - nativeBuildInputs = [ cmake pkg-config ]; - buildInputs = [ curl breakpad ]; + nativeBuildInputs = [ + cmake + pkg-config + ]; + + buildInputs = [ + curl + breakpad + ]; + cmakeFlags = [ "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DSENTRY_BREAKPAD_SYSTEM=On" @@ -20,7 +35,8 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://github.com/getsentry/sentry-native"; - description = "Sentry SDK for C, C++ and native applications."; + description = "Sentry SDK for C, C++ and native applications"; + changelog = "https://github.com/getsentry/sentry-native/blob/${version}/CHANGELOG.md"; license = licenses.mit; platforms = platforms.linux; maintainers = with maintainers; [ wheelsandmetal ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/simdjson/default.nix b/third_party/nixpkgs/pkgs/development/libraries/simdjson/default.nix index 215b1ebc4f..571e4e717d 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/simdjson/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/simdjson/default.nix @@ -15,7 +15,13 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DSIMDJSON_DEVELOPER_MODE=OFF" - ] ++ lib.optional stdenv.hostPlatform.isStatic "-DBUILD_SHARED_LIBS=OFF"; + ] ++ lib.optionals stdenv.hostPlatform.isStatic [ + "-DBUILD_SHARED_LIBS=OFF" + ] ++ lib.optionals (with stdenv.hostPlatform; isPower && isBigEndian) [ + # Assume required CPU features are available, since otherwise we + # just get a failed build. + "-DCMAKE_CXX_FLAGS=-mpower8-vector" + ]; meta = with lib; { homepage = "https://simdjson.org/"; diff --git a/third_party/nixpkgs/pkgs/development/libraries/simpleitk/default.nix b/third_party/nixpkgs/pkgs/development/libraries/simpleitk/default.nix index 71a3b7ffee..2990bc25e9 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/simpleitk/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/simpleitk/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, cmake, swig4, lua, itk }: +{ lib, stdenv, fetchFromGitHub, cmake, swig4, lua, itk_5_2 }: stdenv.mkDerivation rec { pname = "simpleitk"; @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ cmake swig4 ]; - buildInputs = [ lua itk ]; + buildInputs = [ lua itk_5_2 ]; # 2.0.0: linker error building examples cmakeFlags = [ "-DBUILD_EXAMPLES=OFF" "-DBUILD_SHARED_LIBS=ON" ]; diff --git a/third_party/nixpkgs/pkgs/development/libraries/sofia-sip/default.nix b/third_party/nixpkgs/pkgs/development/libraries/sofia-sip/default.nix index 6a54c2a807..b3e91bd3fd 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/sofia-sip/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/sofia-sip/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "sofia-sip"; - version = "1.13.9"; + version = "1.13.10"; src = fetchFromGitHub { owner = "freeswitch"; repo = pname; rev = "v${version}"; - sha256 = "sha256-xF2LFbxGhA/gF7Z2LX3WYq3nXOLi0ARGGR4Dd3PCftk="; + sha256 = "sha256-UVyjeIIS0WwnY3GoZLIYTgf7R+C8SCuykDozaxCpog0="; }; buildInputs = [ glib openssl ] ++ lib.optional stdenv.isDarwin SystemConfiguration; diff --git a/third_party/nixpkgs/pkgs/development/libraries/spice-gtk/default.nix b/third_party/nixpkgs/pkgs/development/libraries/spice-gtk/default.nix index 4ea33774cf..2111b23a6f 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/spice-gtk/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/spice-gtk/default.nix @@ -100,10 +100,11 @@ stdenv.mkDerivation rec { python3 python3.pkgs.pyparsing python3.pkgs.six - wayland-scanner vala ] ++ lib.optionals (stdenv.buildPlatform != stdenv.hostPlatform) [ mesonEmulatorHook + ] ++ lib.optionals stdenv.isLinux [ + wayland-scanner ]; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/libraries/sqlcipher/default.nix b/third_party/nixpkgs/pkgs/development/libraries/sqlcipher/default.nix index 7a6b53cb9b..bd8bb5fb56 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/sqlcipher/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/sqlcipher/default.nix @@ -1,19 +1,42 @@ -{ stdenv, lib, fetchFromGitHub, openssl, tcl, installShellFiles, buildPackages, readline, ncurses, zlib, sqlite }: +{ lib +, stdenv +, fetchFromGitHub +, openssl +, tcl +, installShellFiles +, buildPackages +, readline +, ncurses +, zlib +, sqlite +}: stdenv.mkDerivation rec { pname = "sqlcipher"; - version = "4.5.2"; + version = "4.5.3"; src = fetchFromGitHub { owner = "sqlcipher"; repo = "sqlcipher"; rev = "v${version}"; - sha256 = "sha256-EUm4akVWUiK8U6Je1uWMo8KLQLsk57kOFCCU5Uajjt8="; + hash = "sha256-yo7bB6xgF23Hdur25fprSFgbuxNclseUCdq3DFAfIK8="; }; - nativeBuildInputs = [ installShellFiles tcl ]; - buildInputs = [ readline ncurses openssl zlib ]; - depsBuildBuild = [ buildPackages.stdenv.cc ]; + nativeBuildInputs = [ + installShellFiles + tcl + ]; + + buildInputs = [ + readline + ncurses + openssl + zlib + ]; + + depsBuildBuild = [ + buildPackages.stdenv.cc + ]; configureFlags = [ "--enable-threadsafe" @@ -35,9 +58,11 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - homepage = "https://www.zetetic.net/sqlcipher/"; + changelog = "https://github.com/sqlcipher/sqlcipher/blob/v${version}/CHANGELOG.md"; description = "SQLite extension that provides 256 bit AES encryption of database files"; - platforms = platforms.unix; + homepage = "https://www.zetetic.net/sqlcipher/"; license = licenses.bsd3; + maintainers = with maintainers; [ ]; + platforms = platforms.unix; }; } diff --git a/third_party/nixpkgs/pkgs/development/libraries/stargate-libcds/default.nix b/third_party/nixpkgs/pkgs/development/libraries/stargate-libcds/default.nix index 409d9e820f..b74f19e195 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/stargate-libcds/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/stargate-libcds/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { PLAT_FLAGS = lib.optionalString stdenv.isx86_64 "-mfpmath=sse -mssse3"; patches = [ - # Remove unecessary tests (valgrind, coverage) + # Remove unnecessary tests (valgrind, coverage) ./Makefile.patch # Fix for building on darwin diff --git a/third_party/nixpkgs/pkgs/development/libraries/sundials/default.nix b/third_party/nixpkgs/pkgs/development/libraries/sundials/default.nix index 367b7d999e..7868214e6c 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/sundials/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/sundials/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "sundials"; - version = "6.4.1"; + version = "6.5.0"; outputs = [ "out" "examples" ]; src = fetchurl { url = "https://github.com/LLNL/sundials/releases/download/v${version}/sundials-${version}.tar.gz"; - hash = "sha256-e/EKjSkgWRrz+6LbklSOka1g63JBqyM1CpsbxR4F6NA="; + hash = "sha256-TguZjf8pKiYX4Xlgm1ObUR64CDb1+qz4AOaIqIYohQI="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/libraries/ta-lib/default.nix b/third_party/nixpkgs/pkgs/development/libraries/ta-lib/default.nix new file mode 100644 index 0000000000..57e3f34bc6 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/libraries/ta-lib/default.nix @@ -0,0 +1,25 @@ +{ lib, stdenv, fetchFromGitHub, autoreconfHook, pkg-config }: + +stdenv.mkDerivation rec { + name = "ta-lib"; + version = "0.4.0"; + src = fetchFromGitHub { + owner = "rafa-dot-el"; + repo = "talib"; + rev = "${version}"; + sha256 = "sha256-bIzN8f9ZiOLaVzGAXcZUHUh/v9z1U+zY+MnyjJr1lSw="; + }; + + nativeBuildInputs = [ pkg-config autoreconfHook ]; + hardeningDisable = [ "format" ]; + + meta = with lib; { + description = + "TA-Lib is a library that provides common functions for the technical analysis of financial market data."; + homepage = "https://ta-lib.org/"; + license = lib.licenses.bsd3; + + platforms = platforms.linux; + maintainers = with maintainers; [ rafael ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/libraries/tinygltf/default.nix b/third_party/nixpkgs/pkgs/development/libraries/tinygltf/default.nix index d0f5d0add6..0ea26ffa62 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/tinygltf/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/tinygltf/default.nix @@ -18,9 +18,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake ]; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "Header only C++11 tiny glTF 2.0 library"; diff --git a/third_party/nixpkgs/pkgs/development/libraries/vtk/generic.nix b/third_party/nixpkgs/pkgs/development/libraries/vtk/generic.nix index 555e7d0a45..1994e4ace1 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/vtk/generic.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/vtk/generic.nix @@ -30,8 +30,6 @@ in stdenv.mkDerivation rec { else [ (qtEnv "qvtk-qt-env" [ qtx11extras qttools qtdeclarative ]) ]) ++ optionals stdenv.isLinux [ libGLU - libGL - libX11 xorgproto libXt ] ++ optionals stdenv.isDarwin [ @@ -51,7 +49,9 @@ in stdenv.mkDerivation rec { ] ++ optionals enablePython [ pythonInterpreter ]; - propagatedBuildInputs = optionals stdenv.isDarwin [ libobjc ]; + propagatedBuildInputs = optionals stdenv.isDarwin [ libobjc ] + ++ optionals stdenv.isLinux [ libX11 libGL ]; + # see https://github.com/NixOS/nixpkgs/pull/178367#issuecomment-1238827254 patches = map fetchpatch patchesToFetch; diff --git a/third_party/nixpkgs/pkgs/development/libraries/vulkan-headers/default.nix b/third_party/nixpkgs/pkgs/development/libraries/vulkan-headers/default.nix index 47cdccf41f..1db531e373 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/vulkan-headers/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/vulkan-headers/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Vulkan Header files and API registry"; homepage = "https://www.lunarg.com"; - platforms = platforms.unix; + platforms = platforms.unix ++ platforms.windows; license = licenses.asl20; maintainers = [ maintainers.ralith ]; }; diff --git a/third_party/nixpkgs/pkgs/development/libraries/webkitgtk/default.nix b/third_party/nixpkgs/pkgs/development/libraries/webkitgtk/default.nix index d226270c79..e925b68910 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/webkitgtk/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/webkitgtk/default.nix @@ -68,7 +68,7 @@ stdenv.mkDerivation (finalAttrs: { pname = "webkitgtk"; - version = "2.38.2"; + version = "2.38.3"; name = "${finalAttrs.pname}-${finalAttrs.version}+abi=${if lib.versionAtLeast gtk3.version "4.0" then "5.0" else "4.${if lib.versions.major libsoup.version == "2" then "0" else "1"}"}"; outputs = [ "out" "dev" "devdoc" ]; @@ -79,7 +79,7 @@ stdenv.mkDerivation (finalAttrs: { src = fetchurl { url = "https://webkitgtk.org/releases/webkitgtk-${finalAttrs.version}.tar.xz"; - hash = "sha256-8+uCiZZR9YO02Zys0Wr3hKGncQ/OnntoB71szekJ/j4="; + hash = "sha256-QfAB0e1EjGk2s5Sp8g5GQO6/g6fwgmLfKFBPdBBgSlo="; }; patches = lib.optionals stdenv.isLinux [ diff --git a/third_party/nixpkgs/pkgs/development/libraries/xdg-desktop-portal/default.nix b/third_party/nixpkgs/pkgs/development/libraries/xdg-desktop-portal/default.nix index 438940f3ba..2cadab4a67 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/xdg-desktop-portal/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/xdg-desktop-portal/default.nix @@ -27,7 +27,7 @@ stdenv.mkDerivation (finalAttrs: { pname = "xdg-desktop-portal"; - version = "1.15.0"; + version = "1.16.0"; outputs = [ "out" "installedTests" ]; @@ -35,7 +35,7 @@ stdenv.mkDerivation (finalAttrs: { owner = "flatpak"; repo = "xdg-desktop-portal"; rev = finalAttrs.version; - sha256 = "sha256-Kw3zJeGwPfw1fDo8HsgYmrpgCk/PUvWZPRloKJNAJVc="; + sha256 = "sha256-5VNauinTvZrSaQzyP/quL/3p2RPcTJUDLscEQMJpvYA="; }; patches = [ diff --git a/third_party/nixpkgs/pkgs/development/libraries/zchunk/default.nix b/third_party/nixpkgs/pkgs/development/libraries/zchunk/default.nix index 815326e538..c05ba6d0cf 100644 --- a/third_party/nixpkgs/pkgs/development/libraries/zchunk/default.nix +++ b/third_party/nixpkgs/pkgs/development/libraries/zchunk/default.nix @@ -11,20 +11,15 @@ stdenv.mkDerivation rec { pname = "zchunk"; - version = "1.2.2"; + version = "1.2.3"; src = fetchFromGitHub { owner = "zchunk"; repo = pname; rev = version; - hash = "sha256-/gtkw020pybUDUeYydXgJ4PLvdOqZ0RbrLOfNMDaCmA="; + hash = "sha256-YzCEQuG38lVhCwZznhIyny6Yya8iNuhdqgYBz9OhGOc="; }; - # unbreak on darwin by finding argp-standalone, based on the patch from - # buildroot: - # https://github.com/buildroot/buildroot/raw/master/package/zchunk/0001-meson-fix-argp-standalone-wrap-and-find_library.patch - patches = lib.optional stdenv.isDarwin ./0001-meson-fix-argp-standalone.patch; - nativeBuildInputs = [ meson ninja diff --git a/third_party/nixpkgs/pkgs/development/lua-modules/generated-packages.nix b/third_party/nixpkgs/pkgs/development/lua-modules/generated-packages.nix index 57f616e088..487f854b2c 100644 --- a/third_party/nixpkgs/pkgs/development/lua-modules/generated-packages.nix +++ b/third_party/nixpkgs/pkgs/development/lua-modules/generated-packages.nix @@ -224,17 +224,17 @@ cldr = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "cldr"; - version = "0.2.0-0"; + version = "0.3.0-0"; knownRockspec = (fetchurl { - url = "mirror://luarocks/cldr-0.2.0-0.rockspec"; - sha256 = "1vjwrlrdy10bacn0324fvs4sx85xryyg7npw2mp1k9kmasfr8r1s"; + url = "mirror://luarocks/cldr-0.3.0-0.rockspec"; + sha256 = "1fnr8k713w21v7hc64s4w5lgcgnbphq3gm69pisc2s4wq2fkija1"; }).outPath; src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/alerque/cldr-lua.git", - "rev": "51e4760838c0a83ef1a76d0a0fb2e9f964069a50", - "date": "2022-04-16T14:46:14+03:00", - "path": "/nix/store/7jziz15bjm27zw9i3arrxprglakz8n4d-cldr-lua", - "sha256": "1i22mcs50z99850j47gkgwyf0ahl4yh1732b4x3davjwy2fwak1x", + "rev": "4602a7859535ca198ddfaba73a02f9bce3e81025", + "date": "2022-12-06T12:36:06+03:00", + "path": "/nix/store/3xgwqd2pica8301sbfrw4bmv0xm2wzx5-cldr-lua", + "sha256": "0hlfb115qhamczzskvckxczf9dpp8cv8h6vz7zgdl2n025ik9dp4", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -368,6 +368,38 @@ buildLuarocksPackage { }; }) {}; +cyan = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast +, fetchgit, argparse, luafilesystem, tl +}: +buildLuarocksPackage { + pname = "cyan"; + version = "0.2.0-1"; + knownRockspec = (fetchurl { + url = "mirror://luarocks/cyan-0.2.0-1.rockspec"; + sha256 = "06v9arib8slcllqxxx0a1z7wqmb184v7klrisvkdqqhpbrry7ys5"; + }).outPath; + src = fetchgit ( removeAttrs (builtins.fromJSON ''{ + "url": "https://github.com/teal-language/cyan", + "rev": "d2048e73fec6c693a90b189c63db47006cbae699", + "date": "2022-08-21T17:11:18-05:00", + "path": "/nix/store/gz58lng3g8hflqgl6xsnmzkjika0ncvx-cyan", + "sha256": "119slbsvl39r2c51gvv9yvnsda0x9yvbrxnm2nzz2pnwh3ry50qc", + "fetchLFS": false, + "fetchSubmodules": true, + "deepClone": false, + "leaveDotGit": false +} + '') ["date" "path"]) ; + + propagatedBuildInputs = [ argparse luafilesystem tl ]; + + meta = { + homepage = "https://github.com/teal-language/cyan"; + description = "A build system for the Teal language"; + license.fullName = "MIT"; + }; +}) {}; + cyrussasl = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast , fetchgit, lua }: @@ -407,10 +439,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/astoff/digestif", - "rev": "95b13ba7ed33605406353b200920ece08868d5a8", - "date": "2022-07-03T13:41:35+02:00", - "path": "/nix/store/k8y6gk4pqri76657c2sy4j4bkyh30jz5-digestif", - "sha256": "12pksz1l84iml7ng6yhywf0fyy8lclmcn2jjkdrh994lb7q9ya99", + "rev": "f1b4202928a49e8c20f84ed14deafd0f6b798e2f", + "date": "2022-12-07T18:12:23+01:00", + "path": "/nix/store/ss4kfahp9gnz2y826fr5w6dqxyxs25sn-digestif", + "sha256": "1jb8h7yks8bp74jpq85sz69d2k69vhp6gliajz8ximl3hbhdq17i", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -424,7 +456,7 @@ buildLuarocksPackage { meta = { homepage = "https://github.com/astoff/digestif/"; description = "A code analyzer for TeX"; - license.fullName = "MIT"; + license.fullName = "GPLv3+ and other free licenses"; }; }) {}; @@ -546,10 +578,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/lewis6991/gitsigns.nvim", - "rev": "56e01cb0ea52635854e97bd2dd2587c8ebfab978", - "date": "2022-10-16T16:50:37+01:00", - "path": "/nix/store/yrm4xpi43x2sijw8gamvlfgqnyd7j19l-gitsigns.nvim", - "sha256": "0rdfnw2pr0hjxlw7bfjfvbh7lll4ba8ymp5nxq58d0jq01lzsxkr", + "rev": "2ab3bdf0a40bab53033048c6be75bda86316b55d", + "date": "2022-12-19T14:51:38+00:00", + "path": "/nix/store/hdjmih6vd3707wdfvycnvq1ig2q349xx-gitsigns.nvim", + "sha256": "13j5cmrd54cx9d8rirmys01xgmf90ylc3wb5dzmsdjc7hy0viha2", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -693,10 +725,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/stevedonovan/LDoc.git", - "rev": "71dd5edbda829cd87b312956f4eae1ff8133fb14", - "date": "2022-06-17T13:41:29+03:00", - "path": "/nix/store/ywgvf4a5bdh7b7jzx8xgibch0a9kr9d2-LDoc", - "sha256": "0wwr28fl46y84p78bxaw9wsb7b4x7hmjywfdx5d70axh0amnlyrv", + "rev": "01d648f4ad50c3d14f2acadee6acb26beda56990", + "date": "2022-11-18T00:01:45+01:00", + "path": "/nix/store/m7vvl2b5k69jrb88d0y60f2y4ryazkp9-LDoc", + "sha256": "1kl0ba9mnd7nksakzb3vwr0hkkkgyk92v93r2w9xnrq879dhy5mm", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -1084,17 +1116,17 @@ lua-cjson = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "lua-cjson"; - version = "2.1.0.6-1"; + version = "2.1.0.10-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/lua-cjson-2.1.0.6-1.rockspec"; - sha256 = "1x6dk17lwmgkafpki99yl1hlypchbrxr9sxqafrmx7wwvzbz6q11"; + url = "mirror://luarocks/lua-cjson-2.1.0.10-1.rockspec"; + sha256 = "05sp7rq72x4kdkyid1ch0yyscwsi5wk85d2hj6xwssz3h8n8drdg"; }).outPath; src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/openresty/lua-cjson", - "rev": "a03094c5473d9a9764bb486fbe5e99a62d166dae", - "date": "2018-04-19T12:03:43-07:00", - "path": "/nix/store/qdpqx2g0xi1c9fknzxx280mcdq6fi8rw-lua-cjson", - "sha256": "0i2sjsi6flax1k0bm647yijgmc02jznq9bn88mj71pgii79pfjhw", + "rev": "96e6e0ce67ed070a52223c1e9518c9018b1ce376", + "date": "2021-12-10T20:19:58+08:00", + "path": "/nix/store/1ac8lz6smfa8zqfipqfsg749l9rw4ly9-lua-cjson", + "sha256": "03hdsv7d77mggis58k8fmlpbh1d544m0lfqyl9rpjcqkiqs1qvza", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -1233,17 +1265,17 @@ lua-protobuf = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "lua-protobuf"; - version = "0.4.0-1"; + version = "0.4.1-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/lua-protobuf-0.4.0-1.rockspec"; - sha256 = "053r6z37847wm1xaxv5rwplmdqkp507qawgd382z0l7m05f06ls9"; + url = "mirror://luarocks/lua-protobuf-0.4.1-1.rockspec"; + sha256 = "0b395lhby26drb8dzf2gn2avlwvxmnaqmqx5m4g3ik7dmmn7p09i"; }).outPath; src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/starwing/lua-protobuf.git", - "rev": "832facd266366cd86ee9bf41d35327255d0033f2", - "date": "2022-07-27T14:34:12+08:00", - "path": "/nix/store/g68x4cbi6ssd5zak14r5cbi7k88d3ml9-lua-protobuf", - "sha256": "0ynfq0va4w8zlr67ld6v9nmi5mnvchfygd8h5jbwk2vzlj9hg2yw", + "rev": "2a2b0b95117642ad9470bfe0add7dd6ce82f3869", + "date": "2022-11-29T21:34:24+08:00", + "path": "/nix/store/8yjzfj6gy8nkz1dxf0bmy8afwiv8gsjr-lua-protobuf", + "sha256": "0c1vjji0nj9lznsxw5gbnhab0ibs69298yrsn5yky0hhz8mmx5nr", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -1365,17 +1397,17 @@ lua-resty-openssl = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast , fetchgit}: buildLuarocksPackage { pname = "lua-resty-openssl"; - version = "0.8.13-1"; + version = "0.8.15-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/lua-resty-openssl-0.8.13-1.rockspec"; - sha256 = "12wd4v2pc3ppnr64109nx4sh33clwllfbp11mmg1c1n2w13fz578"; + url = "mirror://luarocks/lua-resty-openssl-0.8.15-1.rockspec"; + sha256 = "1i5nvii1wjgs28lcg8gk1axh394fz773br23jppa7rcan7lvrs4j"; }).outPath; src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/fffonion/lua-resty-openssl.git", - "rev": "3293e301f6c3818b780f1a818eacc9b78960b274", - "date": "2022-10-14T16:38:23+08:00", - "path": "/nix/store/ykj5yj8sj9rc5122gg7dcnq723fsxjq5-lua-resty-openssl", - "sha256": "0hkhy8x34z9m7wsqxrrc4vfqw0dbjhq36pjkqcq391vlsvzxhx5h", + "rev": "fadbea797bed4227269128a14fdabd4dee7cc486", + "date": "2022-10-28T12:17:38+08:00", + "path": "/nix/store/a6qqhb2p408mldvm1rqya09rjn04bbkj-lua-resty-openssl", + "sha256": "0w03fggfnqch6q90lwsig803i3rv74vsdxlfdbfb4si2yssjyxsz", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -1635,17 +1667,17 @@ luacheck = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "luacheck"; - version = "1.0.0-1"; + version = "1.1.0-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/luacheck-1.0.0-1.rockspec"; - sha256 = "0q5kqix5n016piqhasp4h22srz1lzp96cjls4fgsbirjn87gsnxv"; + url = "mirror://luarocks/luacheck-1.1.0-1.rockspec"; + sha256 = "1r8d02x0hw28rd5p2gr7sf503lczjxv6qk1q66b375ibx6smpyza"; }).outPath; src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/lunarmodules/luacheck.git", - "rev": "4d2979930245415e556a7c9f47b63ea038afcfee", - "date": "2022-08-24T12:50:43+03:00", - "path": "/nix/store/kfqdn4v9nzqqdw02fri10ic7v61r99n7-luacheck", - "sha256": "1dkqcaf0yrbcwbjiqbpdksj39sj8rbkd8432q568dgq2z5y9khcf", + "rev": "fcbdeacad00e643e0d78c56b9ba6d8b3c7fa584f", + "date": "2022-12-19T20:51:56+03:00", + "path": "/nix/store/srzi8dfrbb9gby9lc7r4sndzzrpzd7nm-luacheck", + "sha256": "0bkbcxadlf0j59lyvadp7hs7l107blkci15i0hrbi72bx18hj99h", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -1992,17 +2024,17 @@ lualogging = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "lualogging"; - version = "1.7.0-1"; + version = "1.8.0-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/lualogging-1.7.0-1.rockspec"; - sha256 = "1h6zrhp3jvx4257gkskg8b6kd7pm6pd9wzhqb20vllyhj5vfb53h"; + url = "mirror://luarocks/lualogging-1.8.0-1.rockspec"; + sha256 = "0q1719r8lg8rnql809ylm6dbnja85f6nwyqir6f9giq3kcbvnsaq"; }).outPath; src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/lunarmodules/lualogging.git", - "rev": "540df4424165b622d7c408b1f9d2d3420a5206e8", - "date": "2022-09-21T22:50:18+02:00", - "path": "/nix/store/69jb23b1gv0pcb20jwan342zzp0zjw1f-lualogging", - "sha256": "1rwbf593qx67cbk45vm155d7ws1y0xgxmwca508l8clq7d6rv3x0", + "rev": "1c6fcf5f68e4d0324c5977f1a27083c06f4d1b8f", + "date": "2022-10-22T09:15:52+02:00", + "path": "/nix/store/yi5v7b8jyplgylsjamjg9c0iswjpzrfj-lualogging", + "sha256": "17y84wrbijfm1z91p8i41ijq9py69qn0k6c5in9yl2mha7s1vndh", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -2309,10 +2341,10 @@ luautf8 = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "luautf8"; - version = "0.1.4-1"; + version = "0.1.5-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/luautf8-0.1.4-1.rockspec"; - sha256 = "1pa91djyymhzfqnlc559v9wgk5l0m40wq0hnlnf841w6h5aj4fra"; + url = "mirror://luarocks/luautf8-0.1.5-1.rockspec"; + sha256 = "0b2fzb3ignpb028j35np3mkkydg73dpm0lqr4z89gzy2gfjm0iy7"; }).outPath; src = fetchurl { url = "https://github.com/starwing/luautf8/archive/refs/tags/0.1.4.tar.gz"; @@ -2372,10 +2404,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/rktjmp/lush.nvim", - "rev": "fca6940b754812746c9758cc512cc97dcdb47de0", - "date": "2022-10-17T06:32:03+11:00", - "path": "/nix/store/aybmp713rb8qa0crm94hgzjcqdvjjv8f-lush.nvim", - "sha256": "1q8jzyxdxlif7sjxjqs8x696q1734saca5g05gqhvv5d23287hrn", + "rev": "4cc81a12731fbefce1582a940b755691eb3eb6d1", + "date": "2022-12-16T22:20:07+11:00", + "path": "/nix/store/2h8v2ff1bha580jzyrhhwa9lnj98f327-lush.nvim", + "sha256": "0zwb9d8makr9k20cdf7fajhk3frbh4n4p1zajxig0f3ws867zjqx", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -2451,14 +2483,14 @@ lyaml = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast }: buildLuarocksPackage { pname = "lyaml"; - version = "6.2.7-1"; + version = "6.2.8-1"; knownRockspec = (fetchurl { - url = "mirror://luarocks/lyaml-6.2.7-1.rockspec"; - sha256 = "0m5bnzg24nyk35gcn4rydgzk0ysk1f6rslxwxd0w3drl1bg64zja"; + url = "mirror://luarocks/lyaml-6.2.8-1.rockspec"; + sha256 = "0d0h70kjl5fkq589y1sx8qy8as002dhcf88pf60pghvch002ryi1"; }).outPath; src = fetchzip { - url = "http://github.com/gvvaughan/lyaml/archive/v6.2.7.zip"; - sha256 = "1qfvk610xgglyv9n2dp0cnh21f20q2zkl941qsv9qcbnm2f03vna"; + url = "http://github.com/gvvaughan/lyaml/archive/v6.2.8.zip"; + sha256 = "0r3jjsd8x2fs1aanki0s1mvpznl16f32c1qfgmicy0icgy5xfch0"; }; disabled = with lua; (luaOlder "5.1") || (luaAtLeast "5.5"); @@ -2539,10 +2571,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/leafo/moonscript.git", - "rev": "b7efcd131046ed921ae1075d7c0f6a3b64a570f7", - "date": "2021-03-18T11:51:52-07:00", - "path": "/nix/store/xijbk0bgjpxjgmvscbqnghj4r3zdzgxl-moonscript", - "sha256": "14xx6pij0djblfv3g2hi0xlljh7h0yrbb03f4x90q5j66v693gx7", + "rev": "a0108328373d5f3f1aefb98341aa895dd75a1b2a", + "date": "2022-11-04T13:38:05-07:00", + "path": "/nix/store/js597jw44cdfq154a7bpqba99ninzsqh-moonscript", + "sha256": "02ig93c1dzrbs64mz40bkzz3p93fdxm6m0i7gfqwiickybr9wd97", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -2614,10 +2646,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/hrsh7th/nvim-cmp", - "rev": "e94d3489311f941788756953df23ca84f83eec95", - "date": "2022-10-16T18:29:26+09:00", - "path": "/nix/store/jplbdkkgdbwxm930wyvxs6ghbljvh47g-nvim-cmp", - "sha256": "1v6iw2bqaqxzspl239jw3aqj64mc9sq2xxibvll7rmxxgv2mgyb5", + "rev": "8bbaeda725d5db6e4e1be2867a64b43bf547cf06", + "date": "2022-12-15T20:27:02+09:00", + "path": "/nix/store/bd3da1ahlp53p3b12780h2x29amr8a3h-nvim-cmp", + "sha256": "1ldbvspz6aam78d47ldpa7bv4z419bzsk5nhli75mz0vzidfvrw5", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -2644,10 +2676,10 @@ buildLuarocksPackage { src = fetchgit ( removeAttrs (builtins.fromJSON ''{ "url": "https://github.com/lunarmodules/penlight.git", - "rev": "d5958e242b95984a278c39c63fadc5ef1258978b", - "date": "2022-08-14T10:06:20+02:00", - "path": "/nix/store/91nha43c2gdjyn8146fn9zfghlgvvdzz-penlight", - "sha256": "0bvc1a3g41mx8wlaq4ig3cl568rsysyggsr00hf7bi0ygf529sny", + "rev": "b101290c532c2901764de57367d3f2b84127286d", + "date": "2022-10-23T07:52:51+03:00", + "path": "/nix/store/k2jh5076dwb8dp6h05vbdj9jpa87gl1f-penlight", + "sha256": "10pb55cfqrpc9a112pvldkanh63s8dww452gl2rkjnrsh9b9gw4b", "fetchLFS": false, "fetchSubmodules": true, "deepClone": false, @@ -2963,6 +2995,38 @@ buildLuarocksPackage { }; }) {}; +teal-language-server = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast +, fetchgit, cyan, dkjson, luafilesystem +}: +buildLuarocksPackage { + pname = "teal-language-server"; + version = "dev-1"; + knownRockspec = (fetchurl { + url = "mirror://luarocks/teal-language-server-dev-1.rockspec"; + sha256 = "01l44c6bknz7ff9xqgich31hlb0yk4ms5k1hs4rhm3cs95s5vlzc"; + }).outPath; + src = fetchgit ( removeAttrs (builtins.fromJSON ''{ + "url": "https://git@github.com/teal-language/teal-language-server.git", + "rev": "38266ed482ef4b7e51d9cf149f4c75103fd0cefc", + "date": "2022-11-22T12:51:28-06:00", + "path": "/nix/store/3wzza2p2c9ylcj8ihv4xmkgljkwgs0z6-teal-language-server", + "sha256": "0q50a9f4gskx80mifpg9lf5haxsiw53b9lik398ijbkym4mfg2sz", + "fetchLFS": false, + "fetchSubmodules": true, + "deepClone": false, + "leaveDotGit": false +} + '') ["date" "path"]) ; + + propagatedBuildInputs = [ cyan dkjson luafilesystem ]; + + meta = { + homepage = "https://github.com/teal-language/teal-language-server"; + description = "A language server for the Teal language"; + license.fullName = "MIT"; + }; +}) {}; + tl = callPackage({ buildLuarocksPackage, luaOlder, luaAtLeast , fetchgit, argparse, compat53, luafilesystem , dkjson}: diff --git a/third_party/nixpkgs/pkgs/development/lua-modules/overrides.nix b/third_party/nixpkgs/pkgs/development/lua-modules/overrides.nix index fe6e304d9f..fbab2d259a 100644 --- a/third_party/nixpkgs/pkgs/development/lua-modules/overrides.nix +++ b/third_party/nixpkgs/pkgs/development/lua-modules/overrides.nix @@ -376,7 +376,7 @@ with prev; ]; }); - lush-nvim = prev.luaLib.overrideLuarocks prev.lush-nvim (drv: rec { + lush-nvim = prev.luaLib.overrideLuarocks prev.lush-nvim (drv: { doCheck = false; }); @@ -398,10 +398,9 @@ with prev; patches = [ ./luuid.patch ]; - postConfigure = let inherit (prev.luuid) version pname; in - '' - sed -Ei ''${rockspecFilename} -e 's|lua >= 5.2|lua >= 5.1,|' - ''; + postConfigure = '' + sed -Ei ''${rockspecFilename} -e 's|lua >= 5.2|lua >= 5.1,|' + ''; }); diff --git a/third_party/nixpkgs/pkgs/development/misc/brev-cli/default.nix b/third_party/nixpkgs/pkgs/development/misc/brev-cli/default.nix index dabe3f748a..d25bb93d49 100644 --- a/third_party/nixpkgs/pkgs/development/misc/brev-cli/default.nix +++ b/third_party/nixpkgs/pkgs/development/misc/brev-cli/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "brev-cli"; - version = "0.6.186"; + version = "0.6.197"; src = fetchFromGitHub { owner = "brevdev"; repo = pname; rev = "v${version}"; - sha256 = "sha256-h8PUxSjC21BsjqFgOOvDPClFLwOTFTTEB57zxUtbuTw="; + sha256 = "sha256-+elot37F8VW7BP18zB8wHbxTHLgnTlXLUJlr82/Y05w="; }; vendorSha256 = "sha256-uaLoh1VhJAT5liGqL77DLhAWviy5Ci8B16LuzCWuek8="; diff --git a/third_party/nixpkgs/pkgs/development/misc/datafusion/default.nix b/third_party/nixpkgs/pkgs/development/misc/datafusion/default.nix index a2e90dab61..f048839292 100644 --- a/third_party/nixpkgs/pkgs/development/misc/datafusion/default.nix +++ b/third_party/nixpkgs/pkgs/development/misc/datafusion/default.nix @@ -1,35 +1,38 @@ -{ stdenv -, lib +{ lib , rustPlatform , fetchFromGitHub +, stdenv +, darwin }: -let - pname = "datafusion-cli"; - version = "unstable-2022-04-08"; -in -rustPlatform.buildRustPackage { - inherit pname version; - # TODO the crate has been yanked so not the best source - # the repo is a workspace with a lock inside a subdirectory, making - # compilation from github source not straightforward - # re-evaluate strategy on release after 7.0.0 +rustPlatform.buildRustPackage rec { + pname = "datafusion-cli"; + version = "15.0.0"; + src = fetchFromGitHub { owner = "apache"; repo = "arrow-datafusion"; - rev = "9cbde6d0e30fd29f59b0a16e309bdb0843cc7c64"; - sha256 = "sha256-XXd9jvWVivOBRS0PVOU9F4RQ6MrS/q78JF4S6Htd67w="; + rev = version; + sha256 = "sha256-s+gQoczTesJGOpz4W5hBPDdxo4eQnf+D10+V2kx65Io="; }; sourceRoot = "source/datafusion-cli"; - cargoSha256 = "sha256-Q0SjVofl1+sex15sSU9s7PgKeHG2b0gJPSqz7YZFOVs="; + cargoSha256 = "sha256-w+/5Ig+U8y4nwu7QisnZvc3UlZaEU/kovV6birOWndE="; + + buildInputs = lib.optional stdenv.isDarwin [ + darwin.apple_sdk.frameworks.Security + ]; + + checkFlags = [ + # fails even outside the Nix sandbox + "--skip=object_storage::tests::s3_region_validation" + ]; meta = with lib; { - broken = stdenv.isDarwin; description = "cli for Apache Arrow DataFusion"; homepage = "https://arrow.apache.org/datafusion"; + changelog = "https://github.com/apache/arrow-datafusion/blob/${version}/datafusion/CHANGELOG.md"; license = licenses.asl20; maintainers = with maintainers; [ happysalada ]; - platforms = platforms.unix; }; } diff --git a/third_party/nixpkgs/pkgs/development/misc/haskell/hasura/kriti-lang.nix b/third_party/nixpkgs/pkgs/development/misc/haskell/hasura/kriti-lang.nix index 7e22aff40d..17362f05dd 100644 --- a/third_party/nixpkgs/pkgs/development/misc/haskell/hasura/kriti-lang.nix +++ b/third_party/nixpkgs/pkgs/development/misc/haskell/hasura/kriti-lang.nix @@ -38,4 +38,8 @@ mkDerivation { ]; license = lib.licenses.asl20; maintainers = with lib.maintainers; [ lassulus ]; + + # Does not compile with ghc-9.2 + hydraPlatforms = lib.platforms.none; + broken = true; } diff --git a/third_party/nixpkgs/pkgs/development/misc/haskell/hercules-ci-optparse-applicative.nix b/third_party/nixpkgs/pkgs/development/misc/haskell/hercules-ci-optparse-applicative.nix index 5c0b6b0eec..28f2c7e812 100644 --- a/third_party/nixpkgs/pkgs/development/misc/haskell/hercules-ci-optparse-applicative.nix +++ b/third_party/nixpkgs/pkgs/development/misc/haskell/hercules-ci-optparse-applicative.nix @@ -7,8 +7,8 @@ mkDerivation { src = fetchFromGitHub { owner = "hercules-ci"; repo = "optparse-applicative"; - rev = "9e2968c09a7c5b29d04578dc68d81ce5aec0591e"; - sha256 = "sha256-11MnpQjmR89gW5WY5BwsPhpk/LwSIxEEhIa4LLiCbBc="; + rev = "3d20deefbef2e66d3c075facc5d01c1aede34f3c"; + sha256 = "sha256-FnFbPvy5iITT7rAjZBBUNQdo3UDP2z8iLg0MiIdXMdo="; }; libraryHaskellDepends = [ ansi-wl-pprint base process transformers transformers-compat diff --git a/third_party/nixpkgs/pkgs/development/misc/resholve/default.nix b/third_party/nixpkgs/pkgs/development/misc/resholve/default.nix index c87f496792..f2db31c351 100644 --- a/third_party/nixpkgs/pkgs/development/misc/resholve/default.nix +++ b/third_party/nixpkgs/pkgs/development/misc/resholve/default.nix @@ -16,13 +16,11 @@ let self = python27'; pkgsBuildHost = pkgsBuildHost // { python27 = python27'; }; # strip down that python version as much as possible - openssl = null; bzip2 = null; readline = null; ncurses = null; gdbm = null; sqlite = null; - libffi = null; rebuildBytecode = false; stripBytecode = true; strip2to3 = true; diff --git a/third_party/nixpkgs/pkgs/development/misc/resholve/source.nix b/third_party/nixpkgs/pkgs/development/misc/resholve/source.nix index fc23352d5d..c09d19aa0d 100644 --- a/third_party/nixpkgs/pkgs/development/misc/resholve/source.nix +++ b/third_party/nixpkgs/pkgs/development/misc/resholve/source.nix @@ -3,7 +3,7 @@ }: rec { - version = "0.8.3"; + version = "0.8.4"; rSrc = # local build -> `make ci`; `make clean` to restore # return to remote source @@ -14,6 +14,6 @@ rec { owner = "abathur"; repo = "resholve"; rev = "v${version}"; - hash = "sha256-HilYaHSMASYXNGoX9/QSP9mpspszksdUrxlkUB1yGHQ="; + hash = "sha256-K63d4Hs+q3N7A7TBQGgBYCNvZTMKTh89Q7PeFJMsU8o="; }; } diff --git a/third_party/nixpkgs/pkgs/development/mobile/androidenv/compose-android-packages.nix b/third_party/nixpkgs/pkgs/development/mobile/androidenv/compose-android-packages.nix index e6e29aa984..fb59b1ec88 100644 --- a/third_party/nixpkgs/pkgs/development/mobile/androidenv/compose-android-packages.nix +++ b/third_party/nixpkgs/pkgs/development/mobile/androidenv/compose-android-packages.nix @@ -6,7 +6,7 @@ , platformToolsVersion ? "33.0.2" , buildToolsVersions ? [ "32.0.0" ] , includeEmulator ? false -, emulatorVersion ? "31.3.7" +, emulatorVersion ? "31.3.9" , platformVersions ? [] , includeSources ? false , includeSystemImages ? false @@ -250,7 +250,7 @@ rec { by setting nixpkgs config option 'android_sdk.accept_license = true;'. '' else callPackage ./tools.nix { - inherit deployAndroidPackage packages toolsVersion; + inherit deployAndroidPackage packages toolsVersion os; postInstall = '' # Symlink all requested plugins diff --git a/third_party/nixpkgs/pkgs/development/nim-packages/c2nim/default.nix b/third_party/nixpkgs/pkgs/development/nim-packages/c2nim/default.nix index 408e4fbee9..c748883dbb 100644 --- a/third_party/nixpkgs/pkgs/development/nim-packages/c2nim/default.nix +++ b/third_party/nixpkgs/pkgs/development/nim-packages/c2nim/default.nix @@ -2,13 +2,13 @@ buildNimPackage rec { pname = "c2nim"; - version = "0.9.18"; + version = "0.9.19"; nimBinOnly = true; src = fetchFromGitHub { owner = "nim-lang"; repo = pname; rev = version; - hash = "sha256-127ux36mfC+PnS2HIQffw+z0TSvzdQXnKRxqYV3XahU="; + hash = "sha256-E8sAhTFIWAnlfWyuvqK8h8g7Puf5ejLEqgLNb5N17os="; }; meta = with lib; src.meta // { diff --git a/third_party/nixpkgs/pkgs/development/nim-packages/getdns/default.nix b/third_party/nixpkgs/pkgs/development/nim-packages/getdns/default.nix new file mode 100644 index 0000000000..035770da98 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/nim-packages/getdns/default.nix @@ -0,0 +1,25 @@ +{ lib, buildNimPackage, fetchFromSourcehut, pkg-config, getdns }: + +buildNimPackage rec { + pname = "getdns"; + version = "20221222"; + src = fetchFromSourcehut { + owner = "~ehmry"; + repo = pname + "-nim"; + rev = version; + hash = "sha256-y7yzY1PcodIK2kC9409FuTpLn0TsWHGiEPnrULrob+k="; + }; + + propagatedNativeBuildInputs = [ pkg-config ]; + propagatedBuildInputs = [ getdns ]; + + doCheck = true; + checkPhase = "nim c tests/test_example_synchronous"; + # The test requires network but check if it builds. + + meta = { + inherit (getdns.meta) homepage license platforms; + description = "Nim wrapper over the getdns library"; + maintainers = with lib.maintainers; [ ehmry ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/node-packages/overrides.nix b/third_party/nixpkgs/pkgs/development/node-packages/overrides.nix index 4e5b04e624..1356c39f0f 100644 --- a/third_party/nixpkgs/pkgs/development/node-packages/overrides.nix +++ b/third_party/nixpkgs/pkgs/development/node-packages/overrides.nix @@ -410,7 +410,7 @@ final: prev: { src = fetchurl { url = "https://registry.npmjs.org/prisma/-/prisma-${version}.tgz"; - sha512 = "sha512-VsecNo0Ca3+bDTzSpJqIpdupKVhhQ8aOYeWc09JlUM89knqvhSrlMrg0U8BiOD4tFrY1OPaCcraK8leDBxKMBg=="; + sha512 = "sha512-DWIhxvxt8f4h6MDd35mz7BJff+fu7HItW3WPDIEpCR3RzcOWyiHBbLQW5/DOgmf+pRLTjwXQob7kuTZVYUAw5w=="; }; postInstall = with pkgs; '' wrapProgram "$out/bin/prisma" \ diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/ansiterminal/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/ansiterminal/default.nix index edd40fb4df..f421e59ce7 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/ansiterminal/default.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/ansiterminal/default.nix @@ -1,16 +1,12 @@ -{ lib, buildDunePackage, fetchFromGitHub }: +{ lib, buildDunePackage, fetchurl }: buildDunePackage rec { pname = "ANSITerminal"; - version = "0.8.2"; + version = "0.8.5"; - useDune2 = true; - - src = fetchFromGitHub { - owner = "Chris00"; - repo = pname; - rev = version; - sha256 = "0dyjischrgwlxqz1p5zbqq76jvk6pl1qj75i7ydhijssr9pj278d"; + src = fetchurl { + url = "https://github.com/Chris00/ANSITerminal/releases/download/${version}/ANSITerminal-${version}.tbz"; + hash = "sha256-q3OyGLajAmfSu8QzEtzzE5gbiwvsVV2SsGuHZkst0w4="; }; doCheck = true; @@ -22,7 +18,7 @@ buildDunePackage rec { movements on ANSI terminals. It also works on the windows shell (but this part is currently work in progress). ''; - inherit (src.meta) homepage; + homepage = "https://github.com/Chris00/ANSITerminal"; license = licenses.lgpl3; maintainers = [ maintainers.jirkamarsik ]; }; diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/class_group_vdf/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/class_group_vdf/default.nix index 181228e28a..cbfaeaf3c4 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/class_group_vdf/default.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/class_group_vdf/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchFromGitLab, buildDunePackage +{ stdenv, lib, fetchFromGitLab, buildDunePackage , gmp, pkg-config, dune-configurator , zarith, integers , alcotest, bisect_ppx }: @@ -38,6 +38,7 @@ buildDunePackage rec { meta = { description = "Verifiable Delay Functions bindings to Chia's VDF"; homepage = "https://gitlab.com/nomadic-labs/tezos"; + broken = stdenv.isDarwin && stdenv.isx86_64; license = lib.licenses.mit; maintainers = [ lib.maintainers.ulrikstrid ]; }; diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/dap/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/dap/default.nix index 6d14945ee1..054020ba64 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/dap/default.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/dap/default.nix @@ -5,13 +5,13 @@ buildDunePackage rec { pname = "dap"; version = "1.0.6"; - useDune2 = true; + duneVersion = "3"; src = fetchurl { url = "https://github.com/hackwaly/ocaml-dap/releases/download/${version}/dap-${version}.tbz"; sha256 = "1zq0f8429m38a4x3h9n3rv7n1vsfjbs72pfi5902a89qwyilkcp0"; }; - minimumOCamlVersion = "4.08"; + minimalOCamlVersion = "4.08"; buildInputs = [ lwt_ppx diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/earlybird/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/earlybird/default.nix index 2ef4946306..08c0a284fa 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/earlybird/default.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/earlybird/default.nix @@ -11,9 +11,9 @@ buildDunePackage rec { pname = "earlybird"; version = "1.1.0"; - useDune2 = true; + duneVersion = "3"; - minimumOCamlVersion = "4.11"; + minimalOCamlVersion = "4.11"; src = fetchFromGitHub { owner = "hackwaly"; diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/git/mirage.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/git/mirage.nix index e7398d0d1d..eb3c799ed5 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/git/mirage.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/git/mirage.nix @@ -43,6 +43,7 @@ buildDunePackage { inherit (git) version src; minimalOCamlVersion = "4.08"; + duneVersion = "3"; buildInputs = [ dns diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/git/paf.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/git/paf.nix index 4806909962..99f0175f0f 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/git/paf.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/git/paf.nix @@ -26,6 +26,7 @@ buildDunePackage { inherit (git) version src; minimalOCamlVersion = "4.08"; + duneVersion = "3"; propagatedBuildInputs = [ git diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/git/unix.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/git/unix.nix index bd2e6f3184..9fdca9fef1 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/git/unix.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/git/unix.nix @@ -15,6 +15,7 @@ buildDunePackage { inherit (git) version src; minimalOCamlVersion = "4.08"; + duneVersion = "3"; buildInputs = [ awa awa-mirage cmdliner diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/httpaf/lwt-unix.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/httpaf/lwt-unix.nix new file mode 100644 index 0000000000..9b78d7bf64 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/httpaf/lwt-unix.nix @@ -0,0 +1,22 @@ +{ lib, buildDunePackage +, httpaf +, faraday-lwt-unix +, lwt +}: + +buildDunePackage { + pname = "httpaf-lwt-unix"; + inherit (httpaf) version src; + duneVersion = "3"; + minimalOCamlVersion = "4.08"; + + propagatedBuildInputs = [ + faraday-lwt-unix + httpaf + lwt + ]; + + meta = httpaf.meta // { + description = "Lwt support for http/af"; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/git.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/git.nix index 387fc60a0a..c489281591 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/git.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/git.nix @@ -10,6 +10,7 @@ buildDunePackage { pname = "irmin-git"; inherit (irmin) version src strictDeps; + duneVersion = "3"; propagatedBuildInputs = [ git diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/graphql.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/graphql.nix index 1b5ecb5139..005bf25eb2 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/graphql.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/graphql.nix @@ -7,6 +7,7 @@ buildDunePackage rec { pname = "irmin-graphql"; inherit (irmin) version src; + duneVersion = "3"; propagatedBuildInputs = [ cohttp-lwt cohttp-lwt-unix graphql-cohttp graphql-lwt irmin git-unix ]; diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/http.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/http.nix index 1f58daca53..9a466928c6 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/http.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/http.nix @@ -9,6 +9,7 @@ buildDunePackage rec { pname = "irmin-http"; inherit (irmin) version src strictDeps; + duneVersion = "3"; propagatedBuildInputs = [ astring cohttp-lwt cohttp-lwt-unix fmt jsonm logs lwt uri irmin webmachine ]; diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/mirage-git.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/mirage-git.nix index 09c1820d60..1491439f76 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/mirage-git.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/mirage-git.nix @@ -7,6 +7,7 @@ buildDunePackage { pname = "irmin-mirage-git"; inherit (irmin-mirage) version src strictDeps; + duneVersion = "3"; propagatedBuildInputs = [ irmin-mirage diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/mirage-graphql.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/mirage-graphql.nix index bfbe45b390..75d3c567a0 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/mirage-graphql.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/irmin/mirage-graphql.nix @@ -6,6 +6,7 @@ buildDunePackage { pname = "irmin-mirage-graphql"; inherit (irmin-mirage) version src strictDeps; + duneVersion = "3"; propagatedBuildInputs = [ irmin-mirage diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/janestreet/0.15.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/janestreet/0.15.nix index 676bea0e47..83a52c9b23 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/janestreet/0.15.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/janestreet/0.15.nix @@ -1,4 +1,5 @@ { self +, bash , fetchpatch , lib , openssl @@ -487,6 +488,10 @@ with self; patdiff = janePackage { pname = "patdiff"; hash = "0623a7n5r659rkxbp96g361mvxkcgc6x9lcbkm3glnppplk5kxr9"; + + # Used by patdiff-git-wrapper. Providing it here also causes the shebang + # line to be automatically patched. + buildInputs = [ bash ]; propagatedBuildInputs = [ core_unix patience_diff ocaml_pcre ]; meta = { description = "File Diff using the Patience Diff algorithm"; @@ -826,11 +831,11 @@ with self; pythonlib = janePackage { pname = "pythonlib"; - hash = "0p88vmp19zmr0r58dz6sawsmbn4yi2vyymad2c82kp93kg66nm1v"; + version = "0.15.1"; + hash = "sha256-j8WXVTEiBmHtoTjkbnIh31vC4IghfAMaEL19nDLx3mc="; meta.description = "A library to help writing wrappers around ocaml code for python"; - patches = lib.optional (lib.versionAtLeast ocaml.version "4.13") ./pythonlib.patch; + buildInputs = [ ppx_optcomp ]; propagatedBuildInputs = [ ppx_expect ppx_let ppx_python stdio typerep ]; - meta.broken = lib.versionAtLeast ocaml.version "4.14"; }; re2 = janePackage { diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/janestreet/pythonlib.patch b/third_party/nixpkgs/pkgs/development/ocaml-modules/janestreet/pythonlib.patch deleted file mode 100644 index 71a32fd023..0000000000 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/janestreet/pythonlib.patch +++ /dev/null @@ -1,22 +0,0 @@ -diff --git a/src/type.ml b/src/type.ml -index 8a9e648..3f3b0e9 100644 ---- a/src/type.ml -+++ b/src/type.ml -@@ -31,12 +31,12 @@ let of_type_desc type_desc ~env = - | Tunivar _ -> Or_error.error_string "not handled: Tunivar" - | Tvariant _ -> Or_error.error_string "not handled: Tvariant" - | Tnil -> Or_error.error_string "not handled: Tnil" -- | Tobject (_, _) -> Or_error.error_string "not handled: Tobject" -- | Tfield (_, _, _, _) -> Or_error.error_string "not handled: Tfield" -- | Tpackage (_, _, _) -> Or_error.error_string "not handled: Tpackage" -- | Tpoly (_, _) -> Or_error.error_string "not handled: Tpoly" -+ | Tobject _ -> Or_error.error_string "not handled: Tobject" -+ | Tfield _ -> Or_error.error_string "not handled: Tfield" -+ | Tpackage _ -> Or_error.error_string "not handled: Tpackage" -+ | Tpoly _ -> Or_error.error_string "not handled: Tpoly" - | Tlink e -> walk e.desc -- | Tsubst e -> walk e.desc -+ | Tsubst (e, _) -> walk e.desc - | Ttuple es -> - let%bind tuple = List.map es ~f:(fun e -> walk e.desc) |> Or_error.all in - (match tuple with diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/jwto/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/jwto/default.nix index 3950c13d3f..745f86dff5 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/jwto/default.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/jwto/default.nix @@ -1,26 +1,26 @@ -{ lib, buildDunePackage, fetchFromGitHub, alcotest, cryptokit, fmt, yojson +{ lib, buildDunePackage, fetchFromGitHub, alcotest, digestif, fmt, yojson , ppxlib , base64, re, ppx_deriving }: buildDunePackage rec { pname = "jwto"; - version = "0.3.0"; + version = "0.4.0"; - useDune2 = true; + duneVersion = "3"; - minimumOCamlVersion = "4.05"; + minimalOCamlVersion = "4.08"; src = fetchFromGitHub { owner = "sporto"; repo = "jwto"; rev = version; - sha256 = "1p799zk8j9c0002xzi2x7ndj1bzqf14744ampcqndrjnsi7mq71s"; + hash = "sha256-TOWwNyrOqboCm8Y4mM6GgtmxGO3NmyDdAX7m8CifA7Y="; }; buildInputs = [ ppxlib ]; propagatedBuildInputs = - [ cryptokit fmt yojson base64 re ppx_deriving ]; + [ digestif fmt yojson base64 re ppx_deriving ]; checkInputs = [ alcotest ]; diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/lru/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/lru/default.nix index ec78ec9101..678023bb8f 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/lru/default.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/lru/default.nix @@ -2,13 +2,11 @@ buildDunePackage rec { pname = "lru"; - version = "0.3.0"; - - useDune2 = true; + version = "0.3.1"; src = fetchurl { - url = "https://github.com/pqwy/lru/releases/download/v${version}/lru-v${version}.tbz"; - sha256 = "1ab9rd7cq15ml8x0wjl44wy99h5z7x4g9vkkz4i2d7n84ghy7vw4"; + url = "https://github.com/pqwy/lru/releases/download/v${version}/lru-${version}.tbz"; + hash = "sha256-bL4j0np9WyRPhpwLiBQNR/cPQTpkYu81wACTJdSyNv0="; }; propagatedBuildInputs = [ psq ]; diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/lwt/ppx.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/lwt/ppx.nix index 1ba21af864..2881560c6f 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/lwt/ppx.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/lwt/ppx.nix @@ -2,11 +2,10 @@ buildDunePackage { pname = "lwt_ppx"; - version = "2.0.2"; + version = "2.1.0"; + duneVersion = "3"; - useDune2 = true; - - minimumOCamlVersion = "4.04"; + minimalOCamlVersion = "4.04"; # `lwt_ppx` has a different release cycle than Lwt, but it's included in # one of its release bundles. @@ -18,8 +17,8 @@ buildDunePackage { src = fetchFromGitHub { owner = "ocsigen"; repo = "lwt"; - rev = "5.4.0"; - sha256 = "sha256-rRivROVbQbXkHWen1n8+9AwrRJaOK0Fhyilw29T7was="; + rev = "5.6.0"; + hash = "sha256-DLQupCkZ14kOuSQatbb7j07I+jvvDCKpdlaR3rijT4s="; }; propagatedBuildInputs = [ lwt ppxlib ]; diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/multipart-form-data/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/multipart-form-data/default.nix new file mode 100644 index 0000000000..126e77f6f2 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/multipart-form-data/default.nix @@ -0,0 +1,30 @@ +{ lib, fetchFromGitHub, buildDunePackage +, lwt, lwt_ppx, stringext +, alcotest }: + +buildDunePackage rec { + pname = "multipart-form-data"; + version = "0.3.0"; + + src = fetchFromGitHub { + owner = "cryptosense"; + repo = pname; + rev = version; + hash = "sha256-3MYJDvVbPIv/JDiB9nKcLRFC5Qa0afyEfz7hk8MWRII="; + }; + + nativeBuildInputs = [ lwt_ppx ]; + propagatedBuildInputs = [ lwt stringext ]; + + duneVersion = "3"; + + doCheck = true; + checkInputs = [ alcotest ]; + + meta = { + description = "Parser for multipart/form-data (RFC2388)"; + homepage = "https://github.com/cryptosense/multipart-form-data"; + license = lib.licenses.bsd2; + maintainers = [ lib.maintainers.vbgl ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/default.nix index 8006477dad..447c4f11d7 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/default.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/default.nix @@ -5,7 +5,8 @@ buildDunePackage { pname = "ocsipersist"; - inherit (ocsipersist-lib) src version useDune2; + inherit (ocsipersist-lib) src version; + duneVersion = "3"; buildInputs = [ ocsipersist-pgsql diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/lib.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/lib.nix index a2abc5d9b3..33b0868802 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/lib.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/lib.nix @@ -6,7 +6,7 @@ buildDunePackage rec { pname = "ocsipersist-lib"; version = "1.1.0"; - useDune2 = true; + duneVersion = "3"; src = fetchFromGitHub { owner = "ocsigen"; diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/pgsql.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/pgsql.nix index e93c8b4790..e2d95e7434 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/pgsql.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/pgsql.nix @@ -7,7 +7,8 @@ buildDunePackage { pname = "ocsipersist-pgsql"; - inherit (ocsipersist-lib) version src useDune2; + inherit (ocsipersist-lib) version src; + duneVersion = "3"; propagatedBuildInputs = [ lwt_log diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/sqlite.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/sqlite.nix index 2cfa30bc90..696863e9fd 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/sqlite.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/ocsipersist/sqlite.nix @@ -7,7 +7,8 @@ buildDunePackage { pname = "ocsipersist-sqlite"; - inherit (ocsipersist-lib) version src useDune2; + inherit (ocsipersist-lib) version src; + duneVersion = "3"; propagatedBuildInputs = [ lwt_log diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/opium/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/opium/default.nix index 5db3d1b4a2..b98d892696 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/opium/default.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/opium/default.nix @@ -1,32 +1,62 @@ { buildDunePackage - -, ppx_sexp_conv -, ppx_fields_conv - +, lib +, fetchurl +, astring +, base64 , cmdliner -, cohttp-lwt-unix +, fmt +, httpaf +, httpaf-lwt-unix , logs , magic-mime -, opium_kernel -, stringext - -, alcotest +, mirage-crypto +, mtime +, multipart-form-data +, ptime +, re +, rock +, tyxml +, uri +, yojson +, alcotest-lwt }: -buildDunePackage { +buildDunePackage rec { pname = "opium"; - inherit (opium_kernel) version src meta minimumOCamlVersion; + minimalOCamlVersion = "4.08"; + duneVersion = "3"; - useDune2 = true; - - doCheck = true; - - buildInputs = [ - ppx_sexp_conv ppx_fields_conv - alcotest - ]; + inherit (rock) src version; propagatedBuildInputs = [ - opium_kernel cmdliner cohttp-lwt-unix magic-mime logs stringext + astring + base64 + cmdliner + fmt + httpaf + httpaf-lwt-unix + logs + magic-mime + mirage-crypto + mtime + multipart-form-data + ptime + re + rock + tyxml + uri + yojson ]; + + doCheck = true; + checkInputs = [ + alcotest-lwt + ]; + + meta = { + description = "OCaml web framework"; + homepage = "https://github.com/rgrinberg/opium"; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.pmahoney ]; + }; } diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/opium_kernel/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/opium_kernel/default.nix deleted file mode 100644 index 6b51443df2..0000000000 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/opium_kernel/default.nix +++ /dev/null @@ -1,44 +0,0 @@ -{ lib -, buildDunePackage -, fetchurl - -, ppx_fields_conv -, ppx_sexp_conv - -, cohttp-lwt -, ezjsonm -, hmap -, sexplib -, fieldslib -}: - -buildDunePackage rec { - pname = "opium_kernel"; - version = "0.18.0"; - - useDune2 = true; - - minimumOCamlVersion = "4.04.1"; - - src = fetchurl { - url = "https://github.com/rgrinberg/opium/releases/download/${version}/opium-${version}.tbz"; - sha256 = "0a2y9gw55psqhqli3a5ps9mfdab8r46fnbj882r2sp366sfcy37q"; - }; - - doCheck = true; - - buildInputs = [ - ppx_sexp_conv ppx_fields_conv - ]; - - propagatedBuildInputs = [ - hmap cohttp-lwt ezjsonm sexplib fieldslib - ]; - - meta = { - description = "Sinatra like web toolkit for OCaml based on cohttp & lwt"; - homepage = "https://github.com/rgrinberg/opium"; - license = lib.licenses.mit; - maintainers = [ lib.maintainers.pmahoney ]; - }; -} diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/paf/cohttp.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/paf/cohttp.nix index fe0505fe7e..cfe20c4ae3 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/paf/cohttp.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/paf/cohttp.nix @@ -24,6 +24,8 @@ buildDunePackage { src ; + duneVersion = "3"; + propagatedBuildInputs = [ paf cohttp-lwt diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/paf/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/paf/default.nix index 59f17d28d3..9885d6c7a6 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/paf/default.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/paf/default.nix @@ -25,14 +25,15 @@ buildDunePackage rec { pname = "paf"; - version = "0.2.0"; + version = "0.3.0"; src = fetchurl { url = "https://github.com/dinosaure/paf-le-chien/releases/download/${version}/paf-${version}.tbz"; - sha256 = "sha256-TzhRxFTPkLMAsLPl0ONC8DRhJRGstF58+QRKbGuJZVE="; + sha256 = "sha256-+RkrmWJJREHg8BBdNe92vYhd2/Frvs7l5qOr9jBwymU="; }; minimalOCamlVersion = "4.08"; + duneVersion = "3"; propagatedBuildInputs = [ mirage-stack diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/paf/le.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/paf/le.nix index 5c07eba3aa..28345a6cdc 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/paf/le.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/paf/le.nix @@ -19,6 +19,8 @@ buildDunePackage { src ; + duneVersion = "3"; + propagatedBuildInputs = [ paf duration diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/rock/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/rock/default.nix new file mode 100644 index 0000000000..ae484e937b --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/rock/default.nix @@ -0,0 +1,35 @@ +{ lib, fetchurl, buildDunePackage +, bigstringaf +, hmap +, httpaf +, lwt +, sexplib0 +}: + +buildDunePackage rec { + pname = "rock"; + version = "0.20.0"; + minimalOCamlVersion = "4.08"; + duneVersion = "3"; + + src = fetchurl { + url = "https://github.com/rgrinberg/opium/releases/download/${version}/opium-${version}.tbz"; + hash = "sha256-MmuRhm3pC69TX4t9Sy/yPjnZUuVzwEs8E/EFS1n/L7Y="; + }; + + propagatedBuildInputs = [ + bigstringaf + hmap + httpaf + lwt + sexplib0 + ]; + + meta = { + description = "Minimalist framework to build extensible HTTP servers and clients"; + homepage = "https://github.com/rgrinberg/opium"; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.vbgl ]; + }; + +} diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/xenstore-tool/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/xenstore-tool/default.nix index 34f32e4f11..4b6c0d89a8 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/xenstore-tool/default.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/xenstore-tool/default.nix @@ -3,7 +3,7 @@ buildDunePackage { pname = "xenstore-tool"; - inherit (xenstore_transport) src version useDune2 minimumOCamlVersion; + inherit (xenstore_transport) src version; buildInputs = [ xenstore_transport xenstore lwt ]; diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/xenstore/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/xenstore/default.nix index 189920290e..7457529472 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/xenstore/default.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/xenstore/default.nix @@ -1,25 +1,23 @@ { lib, buildDunePackage, fetchurl -, cstruct, ppx_cstruct, lwt, ounit, stdlib-shims +, cstruct, ppx_cstruct, lwt, ounit2 }: buildDunePackage rec { pname = "xenstore"; - version = "2.1.1"; + version = "2.2.0"; - minimumOCamlVersion = "4.04"; - - useDune2 = true; + minimalOCamlVersion = "4.08"; src = fetchurl { - url = "https://github.com/mirage/ocaml-xenstore/releases/download/${version}/xenstore-${version}.tbz"; - sha256 = "283814ea21adc345c4d59cfcb17b2f7c1185004ecaecc3871557c961874c84f5"; + url = "https://github.com/mirage/ocaml-xenstore/releases/download/v${version}/xenstore-${version}.tbz"; + hash = "sha256-1Mnqtt5zHeRdYJHvhdQNjN8d4yxUEKD2cpwtoc7DGC0="; }; nativeBuildInputs = [ ppx_cstruct ]; - propagatedBuildInputs = [ stdlib-shims cstruct lwt ]; + propagatedBuildInputs = [ cstruct lwt ]; doCheck = true; - checkInputs = [ ounit ]; + checkInputs = [ ounit2 ]; meta = with lib; { description = "Xenstore protocol in pure OCaml"; diff --git a/third_party/nixpkgs/pkgs/development/ocaml-modules/xenstore_transport/default.nix b/third_party/nixpkgs/pkgs/development/ocaml-modules/xenstore_transport/default.nix index 1981f2d5ca..a7fb853f3b 100644 --- a/third_party/nixpkgs/pkgs/development/ocaml-modules/xenstore_transport/default.nix +++ b/third_party/nixpkgs/pkgs/development/ocaml-modules/xenstore_transport/default.nix @@ -4,8 +4,7 @@ buildDunePackage rec { pname = "xenstore_transport"; version = "1.3.0"; - minimumOCamlVersion = "4.04"; - useDune2 = true; + minimalOCamlVersion = "4.08"; src = fetchFromGitHub { owner = "xapi-project"; diff --git a/third_party/nixpkgs/pkgs/development/octave-modules/vibes/default.nix b/third_party/nixpkgs/pkgs/development/octave-modules/vibes/default.nix index f60a5d7339..4d05a2c689 100644 --- a/third_party/nixpkgs/pkgs/development/octave-modules/vibes/default.nix +++ b/third_party/nixpkgs/pkgs/development/octave-modules/vibes/default.nix @@ -29,7 +29,7 @@ buildOctavePackage rec { VIBes API that enables your program to communicate with the viewer in order to draw figures. This package integrates the VIBes API into Octave. The VIBes application is required for operation and must be installed - seperately. Data types from third-party interval arithmetic libraries for + separately. Data types from third-party interval arithmetic libraries for Octave are also supported. ''; # Marked this way until KarlJoad gets around to packaging the vibes program. diff --git a/third_party/nixpkgs/pkgs/development/php-packages/composer/default.nix b/third_party/nixpkgs/pkgs/development/php-packages/composer/default.nix index c723f201a2..d7c686a7db 100644 --- a/third_party/nixpkgs/pkgs/development/php-packages/composer/default.nix +++ b/third_party/nixpkgs/pkgs/development/php-packages/composer/default.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, makeWrapper, unzip, lib, php }: let pname = "composer"; - version = "2.4.4"; + version = "2.5.1"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://getcomposer.org/download/${version}/composer.phar"; - sha256 = "sha256-wlLCoiGZVviAif/CQrQsjLkwCjaP04kNY5QOT8llI0U="; + sha256 = "sha256-8blP7hGlvWoarl13yNomnfJ8cF/MgG6/TIwub6hkXCA="; }; dontUnpack = true; diff --git a/third_party/nixpkgs/pkgs/development/php-packages/mongodb/default.nix b/third_party/nixpkgs/pkgs/development/php-packages/mongodb/default.nix index 7c4150a5cf..a2784b09d1 100644 --- a/third_party/nixpkgs/pkgs/development/php-packages/mongodb/default.nix +++ b/third_party/nixpkgs/pkgs/development/php-packages/mongodb/default.nix @@ -14,8 +14,8 @@ buildPecl { pname = "mongodb"; - version = "1.14.2"; - sha256 = "1amayawrkyl1f44b8qwvm9567nxxfpv12pkn65adgjbwk5ds6z3g"; + version = "1.15.0"; + sha256 = "sha256-7rYmjTS9C0o9zGDd5OSE9c9PokOco9nwJMAADpnuckA="; nativeBuildInputs = [ pkg-config ]; buildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/afsapi/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/afsapi/default.nix index 323c0a2253..ab9d8f1abe 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/afsapi/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/afsapi/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "afsapi"; - version = "0.2.7"; + version = "0.2.8"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "wlcrs"; repo = "python-afsapi"; rev = "refs/tags/${version}"; - hash = "sha256-TTZk/8mfG5lBr8SyMbqSaYDskWKnUlMkAUp94DXPCKo="; + hash = "sha256-eE5BsXNtSU6YUhRn4/SKpMrqaYf8tyfLKdxxGOmNJ9I="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -50,6 +50,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python implementation of the Frontier Silicon API"; homepage = "https://github.com/wlcrs/python-afsapi"; + changelog = "https://github.com/wlcrs/python-afsapi/releases/tag/${version}"; license = licenses.asl20; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ailment/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ailment/default.nix index 26a3d7451a..13be1fcc1a 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ailment/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ailment/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "ailment"; - version = "9.2.29"; + version = "9.2.31"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-Yso47p4d8buJTdXOrm7luvtxpFu+oTFhqTBueQaXqII="; + hash = "sha256-jG7lZet15mp1ltbdcv1ZMHHa+ydFXQiNS+dl70tmluE="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/aiobotocore/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/aiobotocore/default.nix index 4762372e8c..adf53a17b8 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/aiobotocore/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/aiobotocore/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "aiobotocore"; - version = "2.4.1"; + version = "2.4.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "aio-libs"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-jJ1Yc5vs33vXdSjDFUXhdquz1s7NxzJELQsM3hthhzg="; + hash = "sha256-IHVplle73JVLbz9R9uPyleL9Occ723EE9Ogl059TcPg="; }; # Relax version constraints: aiobotocore works with newer botocore versions diff --git a/third_party/nixpkgs/pkgs/development/python-modules/aiolifx-themes/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/aiolifx-themes/default.nix index ebcf0d9138..8263104c39 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/aiolifx-themes/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/aiolifx-themes/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "aiolifx-themes"; - version = "0.2.1"; + version = "0.4.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "Djelibeybi"; repo = "aiolifx-themes"; rev = "refs/tags/v${version}"; - hash = "sha256-sWEWfsew758jl6vLB7AQQ3nA83BFHF7YPy1ZaoPt45Y="; + hash = "sha256-U3hIKmgnafkuVLi1r42BBXDKVcSSvLaRnmOEANasEyY="; }; prePatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/aiomisc/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/aiomisc/default.nix index d1fd33eb61..d3c386eef7 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/aiomisc/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/aiomisc/default.nix @@ -8,7 +8,7 @@ , colorlog , croniter , fastapi -, fetchFromGitHub +, fetchPypi , logging-journald , pytestCheckHook , pythonOlder @@ -20,16 +20,14 @@ buildPythonPackage rec { pname = "aiomisc"; - version = "16.2"; + version = "16.2.10"; format = "setuptools"; disabled = pythonOlder "3.7"; - src = fetchFromGitHub { - owner = "aiokitchen"; - repo = pname; - rev = "refs/tags/v${version}"; - hash = "sha256-wxm7MrFHZ7TrUGw5w7iLWs1olU8ZmJmJ7M/BZ6Nf0fU="; + src = fetchPypi { + inherit pname version; + hash = "sha256-iQlbd1DoPgxq+Am0BTDYXIBZoC21/54+bywDtcCXlls="; }; propagatedBuildInputs = [ @@ -73,11 +71,14 @@ buildPythonPackage rec { "aiomisc" ]; - disabledTestPaths = [ - # Dependencies are not available at the moment - "tests/test_entrypoint.py" - "tests/test_raven_service.py" - ]; + # Upstream stopped tagging with 16.2 + doCheck = false; + + # disabledTestPaths = [ + # # Dependencies are not available at the moment + # "tests/test_entrypoint.py" + # "tests/test_raven_service.py" + # ]; meta = with lib; { description = "Miscellaneous utils for asyncio"; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/aliyun-python-sdk-cdn/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/aliyun-python-sdk-cdn/default.nix index 023afd0482..f305aebecf 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/aliyun-python-sdk-cdn/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/aliyun-python-sdk-cdn/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "aliyun-python-sdk-cdn"; - version = "3.7.9"; + version = "3.7.10"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-EdHsg/e9ANj191MVpFHJ1omMDwFx77BDrK7S+WxzUTI="; + hash = "sha256-Zewi/LroLKFPCVYp2yBvn6gL/KAvbH5p8yNDxaHHTDY="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/aliyun-python-sdk-config/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/aliyun-python-sdk-config/default.nix index 9bda151813..a398612cea 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/aliyun-python-sdk-config/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/aliyun-python-sdk-config/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "aliyun-python-sdk-config"; - version = "2.2.2"; + version = "2.2.3"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-cX3DqY8n0UEq9F1xOQI3IQi2Rc4cutcT0y3xc5G9dcg="; + hash = "sha256-rSywGyd9xpR11u9C0kJsx8RSzYhzZ4mF41ZPQ9PWWqQ="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/aliyun-python-sdk-dbfs/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/aliyun-python-sdk-dbfs/default.nix index c0a2bed20c..73e997b9cd 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/aliyun-python-sdk-dbfs/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/aliyun-python-sdk-dbfs/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "aliyun-python-sdk-dbfs"; - version = "2.0.2"; + version = "2.0.3"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-+zypKosn+lKEjxJhjLHD43i8jK40WvapD8pjXQehU7E="; + hash = "sha256-vMF0bAsICikvDtxn+wXujo8bY4DQ/xxXJmUePMQ+7Ak="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/angr/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/angr/default.nix index a9357f7943..82355e75be 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/angr/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/angr/default.nix @@ -31,7 +31,7 @@ buildPythonPackage rec { pname = "angr"; - version = "9.2.29"; + version = "9.2.31"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -40,7 +40,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "v${version}"; - hash = "sha256-cAruoJhQpxK/+sRcyoLoBlG35b11UV2Tjwt2+QUx46E="; + hash = "sha256-i7kIHDg1iCtEeigS2+4MTS2fmUYYEbruL7q0s1skR9k="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ansible-compat/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ansible-compat/default.nix index f92423fde3..e1d69c6f9f 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ansible-compat/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ansible-compat/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "ansible-compat"; - version = "2.2.5"; + version = "2.2.7"; format = "pyproject"; src = fetchPypi { inherit pname version; - sha256 = "sha256-KMfFRf1g75wwWc+y/v0n+S2wkf9rWGj4PxIc614f4bU="; + sha256 = "sha256-CN7dzQodxrqr5nSwfG/4ghGEksEj0oH1bwGQUnGn/8Q="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ansible-doctor/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ansible-doctor/default.nix index bac3c2e883..d05d730a46 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ansible-doctor/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ansible-doctor/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "ansible-doctor"; - version = "1.4.7"; + version = "1.4.8"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "thegeeklab"; repo = "ansible-doctor"; rev = "refs/tags/v${version}"; - hash = "sha256-FTDbQ9RZs1XleferFS8BAioWP0iWyHrDbytY68q/0tQ="; + hash = "sha256-A4SqDEArnRG9SJTqU/C9TOQO2vjot+hfj2/PKB/JMfw="; }; pythonRelaxDeps = true; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ansible-later/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ansible-later/default.nix index b383453f7b..15234692a8 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ansible-later/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ansible-later/default.nix @@ -14,6 +14,7 @@ , pytest-mock , python-json-logger , pytestCheckHook +, pythonRelaxDepsHook , pythonOlder , pyyaml , toolz @@ -23,7 +24,7 @@ buildPythonPackage rec { pname = "ansible-later"; - version = "2.0.23"; + version = "3.0.2"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -32,23 +33,29 @@ buildPythonPackage rec { owner = "thegeeklab"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-FQnyWC7d9h8Ya2BlaTGTrNXkHtJJLdeNL7qXP7scLFA="; + hash = "sha256-+UcrkITiRrAKo5MFcsSqEpvzuo4Czv+rHMWsnuvVx5o="; }; postPatch = '' substituteInPlace pyproject.toml \ --replace 'version = "0.0.0"' 'version = "${version}"' \ - --replace " --cov=ansiblelater --cov-report=xml:coverage.xml --cov-report=term --cov-append --no-cov-on-fail" "" \ - --replace 'PyYAML = "6.0"' 'PyYAML = "*"' \ - --replace 'unidiff = "0.7.3"' 'unidiff = "*"' \ - --replace 'jsonschema = "' 'jsonschema = "^' \ - --replace 'python-json-logger = "' 'python-json-logger = "^' \ - --replace 'toolz = "0.11.2' 'toolz = "*' \ - --replace 'yamllint = "' 'yamllint = "^' + --replace " --cov=ansiblelater --cov-report=xml:coverage.xml --cov-report=term --cov-append --no-cov-on-fail" "" ''; + pythonRelaxDeps = [ + "flake8" + "jsonschema" + "pathspec" + "python-json-logger" + "pyyaml" + "toolz" + "unidiff" + "yamllint" + ]; + nativeBuildInputs = [ poetry-core + pythonRelaxDepsHook ]; propagatedBuildInputs = [ @@ -84,6 +91,7 @@ buildPythonPackage rec { meta = with lib; { description = "Best practice scanner for Ansible roles and playbooks"; homepage = "https://github.com/thegeeklab/ansible-later"; + changelog = "https://github.com/thegeeklab/ansible-later/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ tboerger ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ansible-lint/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ansible-lint/default.nix index 8205371377..691a4f1146 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ansible-lint/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ansible-lint/default.nix @@ -22,13 +22,13 @@ buildPythonPackage rec { pname = "ansible-lint"; - version = "6.9.0"; + version = "6.10.0"; format = "pyproject"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - sha256 = "sha256-FO+RmSDErMmAVH3tC9Qjp6J6CyMnc45ZM0P0RvOxJsY="; + sha256 = "sha256-9ezsWOvntr/El2vn1uQAQRqK8FsOGhnxXyX1nzQBNIw="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/antlr4-python3-runtime/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/antlr4-python3-runtime/default.nix index 1ab91cacbc..4f5f25d015 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/antlr4-python3-runtime/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/antlr4-python3-runtime/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { # in 4.9, test was renamed to tests checkPhase = '' cd test* - ${python.interpreter} ctest.py + ${python.interpreter} run.py ''; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/python-modules/aocd/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/aocd/default.nix index eb33639b8b..00c8450ba0 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/aocd/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/aocd/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { pname = "aocd"; - version = "1.3.1"; + version = "1.3.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -29,7 +29,7 @@ buildPythonPackage rec { owner = "wimglenn"; repo = "advent-of-code-data"; rev = "refs/tags/v${version}"; - hash = "sha256-xns//QAAYw9+Md0THUxFUxnqCDoS1qGslX6CFbIALng="; + hash = "sha256-yY8ItXZZp0yVs4viJzduMPq8Q8NKd34uvlGaVUE2GjQ="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/appthreat-vulnerability-db/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/appthreat-vulnerability-db/default.nix index b57e9d4f60..47ec470dfd 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/appthreat-vulnerability-db/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/appthreat-vulnerability-db/default.nix @@ -3,19 +3,19 @@ , buildPythonPackage , cvss , fetchFromGitHub +, httpx , msgpack , orjson , packageurl-python , pytestCheckHook , pythonOlder -, requests , semver , tabulate }: buildPythonPackage rec { pname = "appthreat-vulnerability-db"; - version = "4.1.12"; + version = "4.3.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -24,19 +24,19 @@ buildPythonPackage rec { owner = "AppThreat"; repo = "vulnerability-db"; rev = "refs/tags/v${version}"; - hash = "sha256-DHjB8hT9rP1yyeo9I5D8JGIXq+17RYX+e6H7BBuWTw4="; + hash = "sha256-1WBaNTARe0ULWHf0g/6Jljo1yCffnJAS9ycbhGqzOUk="; }; propagatedBuildInputs = [ appdirs cvss + httpx msgpack orjson packageurl-python - requests semver tabulate - ]; + ] ++ httpx.optional-dependencies.http2; checkInputs = [ pytestCheckHook diff --git a/third_party/nixpkgs/pkgs/development/python-modules/apycula/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/apycula/default.nix index 0e68a347d4..4347fd925d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/apycula/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/apycula/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "apycula"; - version = "0.5.1"; + version = "0.6.1"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { src = fetchPypi { inherit version; pname = "Apycula"; - hash = "sha256-icyIvnvHJSZKI59c3YexHoqDPf8Phhn9+x17Wr17aQ8="; + hash = "sha256-/XQ/Q4/LzCBDaTindbBENOh5OSIH2JPLyiYFWT9DcP4="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/arabic-reshaper/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/arabic-reshaper/default.nix index 88675337b4..de1ea1c190 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/arabic-reshaper/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/arabic-reshaper/default.nix @@ -1,26 +1,48 @@ -{ lib, buildPythonPackage, fetchPypi, future, configparser, isPy27 }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, fonttools +, future +, pytestCheckHook +, pythonOlder +}: buildPythonPackage rec { - pname = "arabic_reshaper"; - version = "2.1.3"; + pname = "arabic-reshaper"; + version = "2.1.4"; + format = "setuptools"; - src = fetchPypi { - inherit pname version; - sha256 = "a236fc6e9dde2a61cc6a5ca962b522e42694e1bb2a2d86894ed7a4eba4ce1890"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "mpcabd"; + repo = "python-arabic-reshaper"; + rev = "v${version}"; + hash = "sha256-qQGIC/KequOQZoxwm7AEkdPV0QpS7YoBV9v8ZA7AYQM="; }; - propagatedBuildInputs = [ future ] - ++ lib.optionals isPy27 [ configparser ]; + propagatedBuildInputs = [ + future + ]; - # Tests are not published on pypi - doCheck = false; + passthru.optional-dependencies = { + with-fonttools = [ + fonttools + ]; + }; - pythonImportsCheck = [ "arabic_reshaper" ]; + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "arabic_reshaper" + ]; meta = with lib; { - homepage = "https://github.com/mpcabd/python-arabic-reshaper"; description = "Reconstruct Arabic sentences to be used in applications that don't support Arabic"; - platforms = platforms.unix; + homepage = "https://github.com/mpcabd/python-arabic-reshaper"; + license = with licenses; [ mit ]; maintainers = with maintainers; [ freezeboy ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/archinfo/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/archinfo/default.nix index 714e57f6eb..4bdc1c5585 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/archinfo/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/archinfo/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "archinfo"; - version = "9.2.29"; + version = "9.2.31"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-kS7NTlZnWwcvuRV/Eq3K0MJ/bGYcR5BWIbdPONuTqII="; + hash = "sha256-mrsEdVUp13XqVwrbLYbR8vAsu5wPHQcIOBBSmSPJQYY="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/asana/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/asana/default.nix index 24e189cb55..acb82fa8d6 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/asana/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/asana/default.nix @@ -6,12 +6,11 @@ , requests , requests-oauthlib , responses -, six }: buildPythonPackage rec { pname = "asana"; - version = "2.0.0"; + version = "3.0.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,13 +19,12 @@ buildPythonPackage rec { owner = "asana"; repo = "python-asana"; rev = "refs/tags/v${version}"; - sha256 = "sha256-sY7M446krFIcyWkN2pk9FTa+VTXEOZ6xnHePx35e8IY="; + hash = "sha256-+lktPFCL2c79dNGgbsaFJRELmV6sJ2kiBSb8kd9XPIQ="; }; propagatedBuildInputs = [ requests requests-oauthlib - six ]; checkInputs = [ @@ -41,6 +39,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python client library for Asana"; homepage = "https://github.com/asana/python-asana"; + changelog = "https://github.com/Asana/python-asana/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/asn1tools/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/asn1tools/default.nix index 9168d9dcb4..d9747450a3 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/asn1tools/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/asn1tools/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "asn1tools"; - version = "0.164.0"; + version = "0.165.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "eerimoq"; repo = "asn1tools"; rev = version; - hash= "sha256-sbwwbwkhlZvCb2emuw1FTBj5pnv9SOtHpAcYPSQqIvM="; + hash = "sha256-E9ns4xBDHkmIET2rXsMP9/9knXZ9H0D24w5QISQrYlc="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/atenpdu/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/atenpdu/default.nix index cb2c01d1ff..e95e2811ed 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/atenpdu/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/atenpdu/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "atenpdu"; - version = "0.3.6"; + version = "0.4.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-cl7PZdIdLGvoYd5x7QyjkTBc+pVB9F7En9sxcUoX34Q="; + hash = "sha256-mn44nChWy6z/B+gLc3MDndkRb2+geoojT/4AqwKpLXM="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/atsim_potentials/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/atsim_potentials/default.nix index d77dbfa4aa..9b6f9cf26a 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/atsim_potentials/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/atsim_potentials/default.nix @@ -14,14 +14,14 @@ }: buildPythonPackage rec { - version = "0.4.0"; + version = "0.4.1"; pname = "atsim-potentials"; src = fetchFromGitHub { owner = "mjdrushton"; repo = pname; - rev = version; - sha256 = "sha256-MwjRVd54qa8uJOi9yRXU+Vrve50ndftJUl+TFZKVzQM="; + rev = "refs/tags/${version}"; + sha256 = "sha256-G7lNqwEUwAT0f7M2nUTCxpXOAl6FWKlh7tcsvbur1eM="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/autofaiss/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/autofaiss/default.nix new file mode 100644 index 0000000000..6b8e29a98e --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/autofaiss/default.nix @@ -0,0 +1,79 @@ +{ buildPythonPackage +, embedding-reader +, faiss +, fetchFromGitHub +, fire +, fsspec +, lib +, numpy +, pyarrow +, pytestCheckHook +, pythonRelaxDepsHook +, pythonOlder +}: + +buildPythonPackage rec { + pname = "autofaiss"; + version = "2.15.4"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = "criteo"; + repo = pname; + rev = "refs/tags/${version}"; + hash = "sha256-OnDHwJxJcXx3DGxrkk2D2Ljs4CqPoYx7avdo9C8sDrU="; + }; + + nativeBuildInputs = [ + pythonRelaxDepsHook + ]; + + pythonRemoveDeps = [ + # The `dataclasses` packages is a python2-only backport, unnecessary in + # python3. + "dataclasses" + # We call it faiss, not faiss-cpu. + "faiss-cpu" + ]; + + pythonRelaxDeps = [ + # As of v2.15.4, autofaiss asks for fire<0.5 but we have fire v0.5.0 in + # nixpkgs at the time of writing (2022-12-25). + "fire" + # As of v2.15.3, autofaiss asks for pyarrow<8 but we have pyarrow v9.0.0 in + # nixpkgs at the time of writing (2022-12-15). + "pyarrow" + ]; + + propagatedBuildInputs = [ + embedding-reader + fsspec + numpy + faiss + fire + pyarrow + ]; + + checkInputs = [ + pytestCheckHook + ]; + + disabledTests = [ + # Attempts to spin up a Spark cluster and talk to it which doesn't work in + # the Nix build environment. + "test_build_partitioned_indexes" + "test_index_correctness_in_distributed_mode_with_multiple_indices" + "test_index_correctness_in_distributed_mode" + "test_quantize_with_pyspark" + ]; + + meta = with lib; { + description = "Automatically create Faiss knn indices with the most optimal similarity search parameters"; + homepage = "https://github.com/criteo/autofaiss"; + changelog = "https://github.com/criteo/autofaiss/blob/${version}/CHANGELOG.md"; + license = licenses.asl20; + maintainers = with maintainers; [ samuela ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/python-modules/awacs/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/awacs/default.nix index 38ca2a1156..54e7b32825 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/awacs/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/awacs/default.nix @@ -3,20 +3,18 @@ , fetchPypi , pythonOlder , python - - # python dependencies , typing-extensions }: buildPythonPackage rec { pname = "awacs"; - version = "2.2.0"; + version = "2.3.0"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-zWRQHxjHogmSKSqnvQLJCdoilkOlJ07p00lN+U46WkU="; + hash = "sha256-0tizZWcHe1qbLxpXS/IngExaFFUHZyXXlksWcNL/vEw="; }; propagatedBuildInputs = lib.lists.optionals (pythonOlder "3.8") [ @@ -27,12 +25,15 @@ buildPythonPackage rec { ${python.interpreter} -m unittest discover ''; - pythonImportsCheck = [ "awacs" ]; + pythonImportsCheck = [ + "awacs" + ]; meta = with lib; { description = "AWS Access Policy Language creation library"; - maintainers = with maintainers; [ jlesquembre ]; - license = licenses.bsd2; homepage = "https://github.com/cloudtools/awacs"; + changelog = "https://github.com/cloudtools/awacs/blob/${version}/CHANGELOG.md"; + license = licenses.bsd2; + maintainers = with maintainers; [ jlesquembre ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/awscrt/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/awscrt/default.nix index 85ce9deba6..9ebf947c73 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/awscrt/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/awscrt/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "awscrt"; - version = "0.15.1"; + version = "0.16.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-2VBdad9NL19eW2Djot2gkynyjSCUvG4f0KnEub6M0vg="; + hash = "sha256-j9++euxSsvf6ZLkVJtyGdlOx6WWrAXEOczqwypYZkXA="; }; buildInputs = lib.optionals stdenv.isDarwin [ @@ -33,11 +33,6 @@ buildPythonPackage rec { "strictoverflow" ]; - postPatch = '' - substituteInPlace setup.py \ - --replace "extra_link_args += ['-Wl,-fatal_warnings']" "" - ''; - # gcc <10 is not supported, LLVM on darwin is just fine nativeBuildInputs = [ cmake @@ -58,6 +53,7 @@ buildPythonPackage rec { meta = with lib; { homepage = "https://github.com/awslabs/aws-crt-python"; + changelog = "https://github.com/awslabs/aws-crt-python/releases/tag/v${version}"; description = "Python bindings for the AWS Common Runtime"; license = licenses.asl20; maintainers = with maintainers; [ davegallant ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix index dff9c2fe6d..77db6ebc71 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "azure-mgmt-containerservice"; - version = "20.7.0"; + version = "21.0.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; extension = "zip"; - hash = "sha256-tNuBIfObCWd8JXq49CDLOzMl1pw7ulTQJua7CNJjRuo="; + hash = "sha256-9Jhhd/qmphNnmWphXtFr6V52WA7KtKA8lI6cKsdGsOE="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/azure-mgmt-network/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/azure-mgmt-network/default.nix index 7f09c490cb..e864cefb23 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/azure-mgmt-network/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/azure-mgmt-network/default.nix @@ -9,7 +9,7 @@ }: buildPythonPackage rec { - version = "22.0.0"; + version = "22.2.0"; pname = "azure-mgmt-network"; format = "setuptools"; @@ -18,7 +18,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; extension = "zip"; - hash = "sha256-qXWmZuiYA6BwFP/uydPi8mV68WlXrJlwP9eiTk+q1Ak="; + hash = "sha256-491E1Q59dYFkH5QniR+S5eoiiL/ACwLe+fgYob8/jG4="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/backports_shutil_get_terminal_size/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/backports_shutil_get_terminal_size/default.nix index 7fd9bca3a7..c6e92630e0 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/backports_shutil_get_terminal_size/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/backports_shutil_get_terminal_size/default.nix @@ -9,7 +9,7 @@ if !(pythonOlder "3.3") then null else buildPythonPackage { pname = "backports.shutil_get_terminal_size"; version = "unstable-2016-02-21"; - # there have been numerous fixes commited since the initial release. + # there have been numerous fixes committed since the initial release. # Most notably fixing a problem where the backport would always return # terminal size 0. See https://trac.sagemath.org/ticket/25320#comment:5. # Unfortunately the maintainer seems inactive and has not responded to diff --git a/third_party/nixpkgs/pkgs/development/python-modules/beancount-black/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/beancount-black/default.nix new file mode 100644 index 0000000000..81bc8bc058 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/beancount-black/default.nix @@ -0,0 +1,48 @@ +{ lib +, fetchFromGitHub +, buildPythonPackage +, pythonOlder +, beancount-parser +, click +, poetry-core +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "beancount-black"; + version = "0.1.13"; + + disabled = pythonOlder "3.9"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "LaunchPlatform"; + repo = "beancount-black"; + rev = version; + sha256 = "sha256-jhcPR+5+e8d9cbcXC//xuBwmZ14xtXNlYtmH5yNSU0E="; + }; + + buildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + beancount-parser + click + ]; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "beancount_black" + ]; + + meta = with lib; { + description = "Opinioned code formatter for Beancount"; + homepage = "https://github.com/LaunchPlatform/beancount-black/"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ ambroisie ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/python-modules/beancount-parser/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/beancount-parser/default.nix new file mode 100644 index 0000000000..743fcec49f --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/beancount-parser/default.nix @@ -0,0 +1,46 @@ +{ lib +, fetchFromGitHub +, buildPythonPackage +, pythonOlder +, lark +, poetry-core +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "beancount-parser"; + version = "0.1.21"; + + disabled = pythonOlder "3.9"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "LaunchPlatform"; + repo = "beancount-parser"; + rev = version; + sha256 = "sha256-0uhH75OEjC9iA0XD0VX7CGoRIP/hpM4y+53JnyXgZpA="; + }; + + buildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + lark + ]; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "beancount_parser" + ]; + + meta = with lib; { + description = "Standalone Lark based Beancount syntax parser"; + homepage = "https://github.com/LaunchPlatform/beancount-parser/"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ ambroisie ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/python-modules/beancount_docverif/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/beancount_docverif/default.nix index b39b52970f..761da80b3b 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/beancount_docverif/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/beancount_docverif/default.nix @@ -39,7 +39,7 @@ buildPythonPackage rec { Docverif is the "Document Verification" plugin for beancount, fulfilling the following functions: - Require that every transaction touching an account have an accompanying document on disk. - - Explictly declare the name of a document accompanying a transaction. + - Explicitly declare the name of a document accompanying a transaction. - Explicitly declare that a transaction is expected not to have an accompanying document. - Look for an "implicit" PDF document matching transaction data. - Associate (and require) a document with any type of entry, including open entries themselves. diff --git a/third_party/nixpkgs/pkgs/development/python-modules/bleak-retry-connector/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/bleak-retry-connector/default.nix index 320f009ef3..80f13ecee6 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/bleak-retry-connector/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/bleak-retry-connector/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "bleak-retry-connector"; - version = "2.10.2"; + version = "2.13.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-9s7Ff7lH7a/zoV0blrp5tOZoZkBDAoSZx5aL9VQyzFo="; + hash = "sha256-p61U2WF+Bq2xJif3W74ghS51UggjLjIsFMGdhEu3pq8="; }; postPatch = '' @@ -60,6 +60,7 @@ buildPythonPackage rec { meta = with lib; { description = "Connector for Bleak Clients that handles transient connection failures"; homepage = "https://github.com/bluetooth-devices/bleak-retry-connector"; + changelog = "https://github.com/bluetooth-devices/bleak-retry-connector/blob/v${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/bluetooth-adapters/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/bluetooth-adapters/default.nix index 6e75042212..15487e607c 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/bluetooth-adapters/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/bluetooth-adapters/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "bluetooth-adapters"; - version = "0.12.0"; + version = "0.15.2"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-meBCjWKAIN6sNrBp/Riptu9igvVwIPf0G2x+Z3Kqkts="; + hash = "sha256-vwcOMg10XRT6wNkQQF6qkbWSG2rsUXaDSEiIevii1eA="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/bluetooth-auto-recovery/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/bluetooth-auto-recovery/default.nix index ab158f4d72..38a577cf12 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/bluetooth-auto-recovery/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/bluetooth-auto-recovery/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "bluetooth-auto-recovery"; - version = "1.0.0"; + version = "1.0.3"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-TkTWF8Ljt2cLIuz2FnktrZFAlpvTVkFh6evE8TSzJhk="; + hash = "sha256-gDypj2Vud6JtbGREPotvawgcsu5hbf92gJxxutWHcII="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/bluetooth-data-tools/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/bluetooth-data-tools/default.nix index 42c6965302..460f143d87 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/bluetooth-data-tools/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/bluetooth-data-tools/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "bluetooth-data-tools"; - version = "0.3.0"; + version = "0.3.1"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-bZ2kT9yIIHFd3/INIuJh3MdKzF8NCYNeVS/Egg5+S7I="; + hash = "sha256-MMsg1laEk9cKU4oMhjKI47ulLNaGPH6QjAdx/wuAvMM="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/boltztrap2/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/boltztrap2/default.nix index ae467123e9..04cf75a76d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/boltztrap2/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/boltztrap2/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "boltztrap2"; - version = "22.6.1"; + version = "22.12.1"; format = "setuptools"; disabled = pythonOlder "3.5"; @@ -23,7 +23,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "BoltzTraP2"; inherit version; - hash = "sha256-zEKRsNg5P+KKQCeB49TiiSXRmusvr1zwssHhppZdkfA="; + hash = "sha256-gzjWAMUJcF5AyDS1Qx7opVbYewaqGgmFMDGWCh/2Wz4="; }; dontUseCmakeConfigure = true; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/bootstrapped-pip/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/bootstrapped-pip/default.nix index 812ff1a64c..d2cefade9c 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/bootstrapped-pip/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/bootstrapped-pip/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { postPatch = '' mkdir -p $out/bin - '' + pip.postPatch; + '' + (pip.postPatch or ""); # `pip` does not necessarily have a `postPatch` field. nativeBuildInputs = [ makeWrapper unzip ]; buildInputs = [ python ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/brother/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/brother/default.nix index 297f1161fe..75ea728a0e 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/brother/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/brother/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "brother"; - version = "2.0.0"; + version = "2.1.1"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "bieniu"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-pk9VBFha2NfQWI+fbWwGKcGFa93eKr5Cqh85r1CAXpI="; + hash = "sha256-jMvbZ4/NOA3dnJUdDWk2KTRz1gBOC+oDE0ChGNdFl1o="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/btsmarthub_devicelist/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/btsmarthub_devicelist/default.nix new file mode 100644 index 0000000000..540155c07c --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/btsmarthub_devicelist/default.nix @@ -0,0 +1,44 @@ +{ + lib, + buildPythonPackage, + fetchFromGitHub, + pytestCheckHook, + pythonOlder, + requests, + responses, +}: +buildPythonPackage rec { + pname = "btsmarthub_devicelist"; + version = "0.2.3"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "jxwolstenholme"; + repo = "btsmarthub_devicelist"; + rev = "${version}"; + hash = "sha256-7ncxCpY+A2SuSFa3k21QchrmFs1dPRUMb1r1z/laa6M="; + }; + + propagatedBuildInputs = [ + requests + ]; + + checkInputs = [ + responses + requests + pytestCheckHook + ]; + + disabledTests = [ + "test_btsmarthub2_detection_neither_router_present" + ]; + + meta = with lib; { + description = "Retrieve a list of devices from a bt smarthub or bt smarthub 2 on a local network"; + homepage = "https://github.com/jxwolstenholme/btsmarthub_devicelist"; + license = licenses.mit; + maintainers = with maintainers; [jamiemagee]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/python-modules/buildbot/plugins.nix b/third_party/nixpkgs/pkgs/development/python-modules/buildbot/plugins.nix index 4aee37e102..ee36e10531 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/buildbot/plugins.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/buildbot/plugins.nix @@ -10,7 +10,7 @@ sha256 = "sha256-t4xHfox6h5PY4+phdCQbClHd77+WfpUWErMZCEcMxu0="; }; - # Remove unneccessary circular dependency on buildbot + # Remove unnecessary circular dependency on buildbot postPatch = '' sed -i "s/'buildbot'//" setup.py ''; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/caio/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/caio/default.nix index 28ba5a2f4d..e140cf2292 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/caio/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/caio/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "caio"; - version = "0.9.8"; + version = "0.9.11"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "mosquito"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-hUG5EaraoKj3D3K+Qm2Nm1AFe19qwRy/FnEb1SXWKDM="; + hash = "sha256-BFlpjbC2yxwGtCAMfn1VM5zmioyN5fFNMJDDWceB+LE="; }; checkInputs = [ @@ -32,6 +32,7 @@ buildPythonPackage rec { meta = with lib; { description = "File operations with asyncio support"; homepage = "https://github.com/mosquito/caio"; + changelog = "https://github.com/mosquito/caio/releases/tag/${version}"; license = licenses.asl20; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/casbin/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/casbin/default.nix index 19444ee49f..ccd1df2d93 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/casbin/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/casbin/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "casbin"; - version = "1.17.4"; + version = "1.17.5"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = pname; repo = "pycasbin"; rev = "refs/tags/v${version}"; - hash = "sha256-idcqNWocy4dDh7zv3gz81wHp+9WX5PptXGHI9uqM69M="; + hash = "sha256-PLtIxA3XD9Mi33zRfciocJUml1HqGsWGITlLUKAJUss="; }; propagatedBuildInputs = [ @@ -37,6 +37,7 @@ buildPythonPackage rec { meta = with lib; { description = "Authorization library that supports access control models like ACL, RBAC and ABAC"; homepage = "https://github.com/casbin/pycasbin"; + changelog = "https://github.com/casbin/pycasbin/blob/v${version}/CHANGELOG.md"; license = licenses.asl20; maintainers = with maintainers; [ costrouc ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/certbot-dns-inwx/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/certbot-dns-inwx/default.nix index 7c24a042c9..06a6b3ae3d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/certbot-dns-inwx/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/certbot-dns-inwx/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "certbot-dns-inwx"; - version = "2.1.3"; + version = "2.2.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-yAgualY4J92pJ8PIkICg8w0eYHmT5L3qAUOCW/cAitw="; + sha256 = "sha256-v03QBHsxhl6R8YcwWIKD+pf4APy9S2vFcQe3ZEc6AjI="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/cirq-core/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/cirq-core/default.nix index e9328079b7..34604cc495 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/cirq-core/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/cirq-core/default.nix @@ -31,7 +31,7 @@ buildPythonPackage rec { pname = "cirq-core"; - version = "1.0.0"; + version = "1.1.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -39,8 +39,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "quantumlib"; repo = "cirq"; - rev = "v${version}"; - hash = "sha256-KJ+z4zGrdGIXcGZzqHtWMf8aAzcn9CtltFawcHVldMQ="; + rev = "refs/tags/v${version}"; + hash = "sha256-5j4hbG95KRfRQTyyZgoNp/eHIcy0FphyEhbYnzyUMO4="; }; sourceRoot = "source/${pname}"; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/claripy/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/claripy/default.nix index 7fb0cba782..3190cb6f71 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/claripy/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/claripy/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "claripy"; - version = "9.2.29"; + version = "9.2.31"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-X2c1TVbf/KTUOfjQ8Izt+vyxhQrAki3hCBBwKxgkxbw="; + hash = "sha256-hIzB6E1z3ufbHFoe2IfBTuF4uuJibaFTqDjTf5ubHDU="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/cle/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/cle/default.nix index 9a4180f0fd..02d7d9e539 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/cle/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/cle/default.nix @@ -16,7 +16,7 @@ let # The binaries are following the argr projects release cycle - version = "9.2.29"; + version = "9.2.31"; # Binary files from https://github.com/angr/binaries (only used for testing and only here) binaries = fetchFromGitHub { @@ -38,7 +38,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-fK0j6+UqQVadQPU34oLp50gB+/0YnNnNg/rGuIt5I54="; + hash = "sha256-ZgM1GEsmp6LOoFf33l6cZY6cyCoitPDEpFbAVuAd0p8="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/cleo/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/cleo/default.nix index f834ef198c..216065472b 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/cleo/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/cleo/default.nix @@ -20,11 +20,6 @@ buildPythonPackage rec { hash = "sha256-y9PYlGSPLpZl9Ad2AFuDKIopH0LRETLp35aiZtLcXzM="; }; - postPatch = '' - substituteInPlace pyproject.toml \ - --replace 'crashtest = "^0.3.1"' 'crashtest = "*"' - ''; - nativeBuildInputs = [ poetry-core ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/coinmetrics-api-client/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/coinmetrics-api-client/default.nix index 11b3f859d0..ca6d28f83d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/coinmetrics-api-client/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/coinmetrics-api-client/default.nix @@ -1,31 +1,50 @@ -{ buildPythonPackage, fetchPypi, lib, orjson, pandas, poetry-core -, pytestCheckHook, pytest-mock, pythonOlder, python-dateutil, requests, typer -, websocket-client }: +{ lib +, buildPythonPackage +, fetchPypi +, orjson +, pandas +, poetry-core +, pytestCheckHook +, pytest-mock +, pythonOlder +, python-dateutil +, requests +, typer +, websocket-client +}: buildPythonPackage rec { pname = "coinmetrics-api-client"; - version = "2022.9.22.15"; + version = "2022.11.14.16"; format = "pyproject"; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-37tuZDsGQAmbWSEGc7rjrXtCoSxuBN3MDMmjWHr0eS4="; + hash = "sha256-2x8S9Jj/1bBnhXS/x0lQ8YUQkCvfpgGcDSQU2dGbAn0="; }; - nativeBuildInputs = [ poetry-core ]; + nativeBuildInputs = [ + poetry-core + ]; propagatedBuildInputs = [ - orjson python-dateutil requests typer websocket-client + orjson + python-dateutil + requests + typer + websocket-client ]; checkInputs = [ - pandas pytestCheckHook pytest-mock - ]; + ] ++ passthru.optional-dependencies.pandas; - pythonImportsCheck = [ "coinmetrics.api_client" ]; + pythonImportsCheck = [ + "coinmetrics.api_client" + ]; passthru = { optional-dependencies = { @@ -34,8 +53,8 @@ buildPythonPackage rec { }; meta = with lib; { + description = "Coin Metrics API v4 client library"; homepage = "https://coinmetrics.github.io/api-client-python/site/index.html"; - description = "Coin Metrics API v4 client library (Python)"; license = licenses.mit; maintainers = with maintainers; [ centromere ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/coqpit/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/coqpit/default.nix index 12e1a46025..aee115f5e0 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/coqpit/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/coqpit/default.nix @@ -6,14 +6,14 @@ buildPythonPackage rec { pname = "coqpit"; - version = "0.0.16"; + version = "0.0.17"; format = "setuptools"; src = fetchFromGitHub { owner = "coqui-ai"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-f1FLjR4VzSOA/VaeseVA4F1NWVJIvokIZIDW1k7fNqU="; + sha256 = "sha256-FY3PYd8dY5HFKkhD6kBzPt0k1eFugdqsO3yIN4oDk3E="; }; checkInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/dacite/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/dacite/default.nix index ba74695fb5..12b14b226d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/dacite/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/dacite/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "dacite"; - version = "1.6.0"; + version = "1.7.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -16,19 +16,14 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "konradhalas"; repo = pname; - rev = "v${version}"; - sha256 = "0nv2bnj3bq2v08ac4p583cnpjq2d6bv5isycgji5i5wg1y082a3d"; + rev = "refs/tags/v${version}"; + hash = "sha256-+yWvlJcOmqDkHl3JZfPnIV3C4ieSo4FiBvoUZ0+J4N0="; }; checkInputs = [ pytestCheckHook ]; - disabledTests = lib.optionals (pythonAtLeast "3.10") [ - # https://github.com/konradhalas/dacite/issues/167 - "test_from_dict_with_union_and_wrong_data" - ]; - pythonImportsCheck = [ "dacite" ]; @@ -36,6 +31,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python helper to create data classes from dictionaries"; homepage = "https://github.com/konradhalas/dacite"; + changelog = "https://github.com/konradhalas/dacite/blob/v${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/datasette/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/datasette/default.nix index 8394befc51..91517c564f 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/datasette/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/datasette/default.nix @@ -29,7 +29,7 @@ buildPythonPackage rec { pname = "datasette"; - version = "0.63.2"; + version = "0.63.3"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -38,7 +38,7 @@ buildPythonPackage rec { owner = "simonw"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-VDmh2Q/ab5xaNbj0APuQ9pkZ+GHoNXW2crrJXi556Fk="; + sha256 = "sha256-SnUhF7QOXwCU288L4BB4JnhtP6XyHsBS1PpaFM32J0w="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/dependency-injector/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/dependency-injector/default.nix index 98acaaba40..a4dfd60c92 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/dependency-injector/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/dependency-injector/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "dependency-injector"; - version = "4.40.0"; + version = "4.41.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "ets-labs"; repo = "python-dependency-injector"; rev = version; - hash = "sha256-lcgPFdAgLmv7ILL2VVfqtGSw96aUfPv9oiOhksRtF3k="; + hash = "sha256-U3U/L8UuYrfpm4KwVNmViTbam7QdZd2vp1p+ENtOJlw="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/devolo-plc-api/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/devolo-plc-api/default.nix index 640c06a7bc..4b7e1c21e4 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/devolo-plc-api/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/devolo-plc-api/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "devolo-plc-api"; - version = "0.8.1"; + version = "0.9.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "2Fake"; repo = "devolo_plc_api"; rev = "v${version}"; - sha256 = "sha256-Gjs4x52LwCsE0zAJjLO1N0w5r1jDJkZoVY1JVZB8bmE="; + sha256 = "sha256-FBcDEEWgfV+OgHriSOZKWZPt0O89nDe2CsY3oqX/6zo="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/dj-database-url/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/dj-database-url/default.nix index a28c9dd05a..55a3d408c4 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/dj-database-url/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/dj-database-url/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "dj-database-url"; - version = "1.0.0"; + version = "1.2.0"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-zPPocY913dFHoeIS/KiO7NqnIXWe5I44tIVIHHe8o9w="; + hash = "sha256-sjsVBGyzgYDgyVIHvMkP5enb3o7vFgZZB92Fz0ynA2w="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/django-storages/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/django-storages/default.nix index 040fe39d2b..b49e983c1a 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/django-storages/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/django-storages/default.nix @@ -1,6 +1,7 @@ -{ lib, buildPythonPackage, fetchPypi +{ lib +, buildPythonPackage +, fetchPypi , django - , azure-storage-blob , boto3 , dropbox @@ -11,14 +12,16 @@ buildPythonPackage rec { pname = "django-storages"; - version = "1.13.1"; + version = "1.13.2"; src = fetchPypi { inherit pname version; - sha256 = "sha256-s9mOzAnxsWJ8Kyz0MJZDIs5OCGF9v5tCNsFqModaHgs="; + hash = "sha256-y63RXJCc63JH1P/FA/Eqm+w2mZ340L73wx5XF31RJog="; }; - propagatedBuildInputs = [ django ]; + propagatedBuildInputs = [ + django + ]; preCheck = '' export DJANGO_SETTINGS_MODULE=tests.settings @@ -27,6 +30,7 @@ buildPythonPackage rec { --replace 'test_accessed_time' 'dont_test_accessed_time' \ --replace 'test_modified_time' 'dont_test_modified_time' ''; + checkInputs = [ azure-storage-blob boto3 @@ -36,11 +40,14 @@ buildPythonPackage rec { paramiko ]; - pythonImportsCheck = [ "storages" ]; + pythonImportsCheck = [ + "storages" + ]; meta = with lib; { description = "Collection of custom storage backends for Django"; homepage = "https://django-storages.readthedocs.io"; + changelog = "https://github.com/jschneier/django-storages/blob/${version}/CHANGELOG.rst"; license = licenses.bsd3; maintainers = with maintainers; [ mmai ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/django-stubs-ext/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/django-stubs-ext/default.nix index 883e979b1d..0fb43a1dca 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/django-stubs-ext/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/django-stubs-ext/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "django-stubs-ext"; - version = "0.5.0"; + version = "0.7.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-m9dBg3arALf4jW1Wvp/s6Fv6DHw0isYhFV+k16kRRvI="; + sha256 = "sha256-T9jNvGjRpCHyG7fg2edtUPaktQTTULp4ZAXa9TbpDCE="; }; # setup.cfg tries to pull in nonexistent LICENSE.txt file diff --git a/third_party/nixpkgs/pkgs/development/python-modules/dnachisel/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/dnachisel/default.nix index 1c86e3bccf..777b12b79c 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/dnachisel/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/dnachisel/default.nix @@ -15,13 +15,13 @@ buildPythonPackage rec { pname = "dnachisel"; - version = "3.2.9"; + version = "3.2.10"; src = fetchFromGitHub { owner = "Edinburgh-Genome-Foundry"; repo = "DnaChisel"; rev = "refs/tags/v${version}"; - sha256 = "sha256-Fg0gkI+01xIt8LQmNmRzkzd4AObg/99x34y5NclMtDQ="; + sha256 = "sha256-YlNOvK7ZXUHYdRX1NFEdZ646NGLtGXU1YgAjN6RY2QE="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/dnfile/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/dnfile/default.nix index 83ce068a76..7bcfdf34c2 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/dnfile/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/dnfile/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "dnfile"; - version = "0.12.0"; + version = "0.13.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "malwarefrank"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-r3DupEyMEXOFeSDo9k0LmGM/TGMbbpVW7zCoUA4oG8Y="; + hash = "sha256-TH30gEoxXkaDac6hJsGQFWzwDeqzdZ19HK8i/3Dlh8k="; fetchSubmodules = true; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/doc8/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/doc8/default.nix index 46d0db5e4a..337debd6f8 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/doc8/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/doc8/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "doc8"; - version = "1.0.0"; + version = "1.1.1"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-HpmaFP5BXqltidUFPHkNAQYfGbZzdwa4F9FXnCoHzBY="; + hash = "sha256-2XqT6PWi78RxOggEZX3trYN0XMpM0diN6Rhvd/l3YAQ="; }; nativeBuildInputs = [ @@ -51,6 +51,7 @@ buildPythonPackage rec { meta = with lib; { description = "Style checker for Sphinx (or other) RST documentation"; homepage = "https://github.com/pycqa/doc8"; + changelog = "https://github.com/PyCQA/doc8/releases/tag/v${version}"; license = licenses.asl20; maintainers = with maintainers; [ onny ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/dockerfile-parse/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/dockerfile-parse/default.nix index 55ff20803b..846e85fed3 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/dockerfile-parse/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/dockerfile-parse/default.nix @@ -1,27 +1,22 @@ { lib , buildPythonPackage , fetchPypi -, six , pytestCheckHook , pythonOlder }: buildPythonPackage rec { pname = "dockerfile-parse"; - version = "1.2.0"; + version = "2.0.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-B+Ze7DE5eOh32oGYVYcLOuR/P6yUpAqWW57eEEhNrMU="; + hash = "sha256-If59UQZC8rYamZ1Fw9l0X5UOEf5rokl1Vbj2N4K3jkU="; }; - propagatedBuildInputs = [ - six - ]; - checkInputs = [ pytestCheckHook ]; @@ -38,6 +33,7 @@ buildPythonPackage rec { meta = with lib; { description = "Library for parsing Dockerfile files"; homepage = "https://github.com/DBuildService/dockerfile-parse"; + changelog = "https://github.com/containerbuildsystem/dockerfile-parse/releases/tag/${version}"; license = licenses.bsd3; maintainers = with maintainers; [ leenaars ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/dparse2/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/dparse2/default.nix index d3b61574cf..2fbb2e1f3f 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/dparse2/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/dparse2/default.nix @@ -4,13 +4,13 @@ , pythonOlder , toml , pyyaml -, packaging +, packvers , pytestCheckHook }: buildPythonPackage rec { pname = "dparse2"; - version = "0.6.1"; + version = "0.7.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,14 +18,14 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "nexB"; repo = pname; - rev = version; - hash = "sha256-1tbNW7Gy7gvMnETdAM2ahHiwbhG9qvdYZggia1+7eGo="; + rev = "refs/tags/${version}"; + hash = "sha256-JUTL+SVf1RRIXQqwFR7MnExsgGseSiO0a5YzzcqdXHw="; }; propagatedBuildInputs = [ toml pyyaml - packaging + packvers ]; checkInputs = [ @@ -44,6 +44,7 @@ buildPythonPackage rec { meta = with lib; { description = "Module to parse Python dependency files"; homepage = "https://github.com/nexB/dparse2"; + changelog = "https://github.com/nexB/dparse2/blob/${version}/CHANGELOG.rst"; license = licenses.mit; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/duckdb-engine/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/duckdb-engine/default.nix index db38ac4c29..ff995c7ac1 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/duckdb-engine/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/duckdb-engine/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "duckdb-engine"; - version = "0.6.5"; + version = "0.6.6"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -22,7 +22,7 @@ buildPythonPackage rec { repo = "duckdb_engine"; owner = "Mause"; rev = "refs/tags/v${version}"; - hash = "sha256-DLm/8bye8p2fhs36CW5PQAxm3uhJq1L+DT1Zn2uJhqE="; + hash = "sha256-OpVkMkZt5h4Rp615wx42cR/NFbv6dwsklqM8/xRswtw="; }; nativeBuildInputs = [ @@ -57,6 +57,7 @@ buildPythonPackage rec { meta = with lib; { description = "SQLAlchemy driver for duckdb"; homepage = "https://github.com/Mause/duckdb_engine"; + changelog = "https://github.com/Mause/duckdb_engine/blob/v${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ cpcloud ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/easy-thumbnails/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/easy-thumbnails/default.nix index 896b50416d..8572a5f103 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/easy-thumbnails/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/easy-thumbnails/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "easy-thumbnails"; - version = "2.8.3"; + version = "2.8.4"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-ij7GG7jHL6x/degRqW4815QqyJyrVasWVJ1tLOnN6qU="; + hash = "sha256-aqR3zg9zvtopOzTGMUo/K3jBtFzK6a2fqknjncfzQ2k="; }; propagatedBuildInputs = [ @@ -38,6 +38,7 @@ buildPythonPackage rec { meta = with lib; { description = "Easy thumbnails for Django"; homepage = "https://github.com/SmileyChris/easy-thumbnails"; + changelog = "https://github.com/SmileyChris/easy-thumbnails/blob/${version}/CHANGES.rst"; license = licenses.bsd3; maintainers = with maintainers; [ ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/elegy/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/elegy/default.nix index d4df308e67..290442d515 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/elegy/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/elegy/default.nix @@ -5,8 +5,9 @@ , deepmerge , dm-haiku , fetchFromGitHub +, fetchpatch , jaxlib -, poetry +, poetry-core , pytestCheckHook , pythonOlder , pyyaml @@ -35,6 +36,14 @@ buildPythonPackage rec { hash = "sha256-FZmLriYhsX+zyQKCtCjbOy6MH+AvjzHRNUyaDSXGlLI="; }; + patches = [ + (fetchpatch { + name = "use-poetry-core.patch"; + url = "https://github.com/poets-ai/elegy/commit/0ed472882f470ed9eb7a63b8a537ffabe7e19aa7.patch"; + hash = "sha256-nO/imHo7tEsiZh+64CF/M4eXQ1so3IunVhv8CvYP1ks="; + }) + ]; + # The cloudpickle constraint is too strict. wandb is marked as an optional # dependency but `buildPythonPackage` doesn't seem to respect that setting. # Python constraint: https://github.com/poets-ai/elegy/issues/244 @@ -46,7 +55,7 @@ buildPythonPackage rec { ''; nativeBuildInputs = [ - poetry + poetry-core ]; buildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/embedding-reader/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/embedding-reader/default.nix new file mode 100644 index 0000000000..2d4af5ca1f --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/embedding-reader/default.nix @@ -0,0 +1,39 @@ +{ buildPythonPackage +, fetchFromGitHub +, fsspec +, lib +, numpy +, pandas +, pyarrow +, pytestCheckHook +, pythonRelaxDepsHook +}: + +buildPythonPackage rec { + pname = "embedding-reader"; + version = "1.5.0"; + + src = fetchFromGitHub { + owner = "rom1504"; + repo = pname; + rev = "refs/tags/${version}"; + hash = "sha256-uyeIcAW9O9PR4cqmifC6Lx+Hn6XPb1RH/ksmUWvbdtw="; + }; + + nativeBuildInputs = [ pythonRelaxDepsHook ]; + + pythonRelaxDeps = [ "pyarrow" ]; + + propagatedBuildInputs = [ fsspec numpy pandas pyarrow ]; + + checkInputs = [ pytestCheckHook ]; + + pythonImportsCheck = [ "embedding_reader" ]; + + meta = with lib; { + description = "Efficiently read embedding in streaming from any filesystem"; + homepage = "https://github.com/rom1504/embedding-reader"; + license = licenses.mit; + maintainers = with maintainers; [ samuela ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/python-modules/expecttest/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/expecttest/default.nix index 6892a7bcb6..82128d8b0b 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/expecttest/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/expecttest/default.nix @@ -8,17 +8,17 @@ buildPythonPackage rec { pname = "expecttest"; - version = "0.1.3"; + version = "0.1.4"; format = "pyproject"; src = fetchFromGitHub { owner = "ezyang"; repo = pname; rev = "v${version}"; - hash = "sha256-5CnpVFSbf3FcAa06Y7atG8sxu8uevpfrliB2HuVcrx0="; + hash = "sha256-BFM0jFWXfH72n9XuFtU9URW8LWGPVJncXniBV5547W4="; }; - buildInputs = [ poetry-core ]; + nativeBuildInputs = [ poetry-core ]; checkInputs = [ hypothesis pytestCheckHook ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/explorerscript/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/explorerscript/default.nix index a77c31e26a..4a79dc31c1 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/explorerscript/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/explorerscript/default.nix @@ -2,9 +2,11 @@ , buildPythonPackage , fetchFromGitHub , fetchpatch +, antlr4 , antlr4-python3-runtime , igraph , pygments +, pytestCheckHook }: buildPythonPackage rec { @@ -18,6 +20,10 @@ buildPythonPackage rec { sha256 = "1vzyliiyrxx8l9sfbqcyr4xn5swd7znkxy69kn0vb5rban8hm9c1"; }; + nativeBuildInputs = [ + antlr4 + ]; + patches = [ # https://github.com/SkyTemple/ExplorerScript/pull/17 (fetchpatch { @@ -26,8 +32,27 @@ buildPythonPackage rec { }) ]; - propagatedBuildInputs = [ antlr4-python3-runtime igraph ]; - checkInputs = [ pygments ]; + postPatch = '' + sed -i "s/antlr4-python3-runtime.*/antlr4-python3-runtime',/" setup.py + antlr -Dlanguage=Python3 -visitor explorerscript/antlr/{ExplorerScript,SsbScript}.g4 + ''; + + propagatedBuildInputs = [ + antlr4-python3-runtime + igraph + ]; + + passthru.optional-dependencies.pygments = [ + pygments + ]; + + checkInputs = [ + pytestCheckHook + ] ++ passthru.optional-dependencies.pygments; + + pythonImportsCheck = [ + "explorerscript" + ]; meta = with lib; { homepage = "https://github.com/SkyTemple/explorerscript"; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ezyrb/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ezyrb/default.nix index e3f6419871..21741fac03 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ezyrb/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ezyrb/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "ezyrb"; - version = "1.3.0.post2209"; + version = "1.3.0.post2212"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "mathLab"; repo = "EZyRB"; rev = "refs/tags/v${version}"; - sha256 = "sha256-jybDVPUybIuTeWRAA0cphb2pDVobuMX1OufBavZ/ZbQ="; + sha256 = "sha256-Em7t84fCTYCJfsjLGKhno75PheALhSbLH7z1mfgQ+v4="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/fakeredis/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/fakeredis/default.nix index d86e6b0165..a0f68ea0da 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/fakeredis/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/fakeredis/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "fakeredis"; - version = "2.2.0"; + version = "2.4.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "dsoftwareinc"; repo = "fakeredis-py"; rev = "refs/tags/v${version}"; - hash = "sha256-W24DMVp3E6SYaVTUYCRDm/tLaGcjDqecO3rN1RO/J84="; + hash = "sha256-LKUDwx3EEcOQFhUjTe5xm3AQRuwTGsYY27Vmg2R9ofc="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/faraday-plugins/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/faraday-plugins/default.nix index 2807584c63..34bc3b384e 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/faraday-plugins/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/faraday-plugins/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "faraday-plugins"; - version = "1.8.1"; + version = "1.9.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "infobyte"; repo = "faraday_plugins"; rev = "refs/tags/${version}"; - hash = "sha256-UnOIYYmOeBX22jQ4MkDxQKtSlxv+H/KOC83BZ39JA1E="; + hash = "sha256-ZWPImBqBpiz3y4OpDZLCfL3Oe/J+qP1Hduas3p0unCg="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/fire/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/fire/default.nix index 252b180c4e..bec9599793 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/fire/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/fire/default.nix @@ -1,26 +1,44 @@ -{ lib, buildPythonPackage, fetchFromGitHub, six, hypothesis, mock -, python-Levenshtein, pytest, termcolor, isPy27, enum34 }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, six +, hypothesis +, mock +, python-Levenshtein +, pytestCheckHook +, termcolor +, pythonOlder +}: buildPythonPackage rec { pname = "fire"; - version = "0.4.0"; + version = "0.5.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "google"; repo = "python-fire"; - rev = "v${version}"; - sha256 = "1caz6j2kdhj0kccrnqri6b4g2d6wzkkx8y9vxyvm7axvrwkv2vyn"; + rev = "refs/tags/v${version}"; + hash = "sha256-cwY1RRNtpAn6LnBASQLTNf4XXSPnfhOa1WgglGEM2/s="; }; - propagatedBuildInputs = [ six termcolor ] ++ lib.optional isPy27 enum34; + propagatedBuildInputs = [ + six + termcolor + ]; - checkInputs = [ hypothesis mock python-Levenshtein pytest ]; + checkInputs = [ + hypothesis + mock + python-Levenshtein + pytestCheckHook + ]; - # ignore test which asserts exact usage statement, default behavior - # changed in python3.8. This can likely be remove >=0.3.1 - checkPhase = '' - py.test -k 'not testInitRequiresFlag' - ''; + pythonImportsCheck = [ + "fire" + ]; meta = with lib; { description = "A library for automatically generating command line interfaces"; @@ -42,6 +60,8 @@ buildPythonPackage rec { REPL with the modules and variables you'll need already imported and created. ''; + homepage = "https://github.com/google/python-fire"; + changelog = "https://github.com/google/python-fire/releases/tag/v${version}"; license = licenses.asl20; maintainers = with maintainers; [ leenaars ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/gaphas/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/gaphas/default.nix index 108bf9c347..7566ea814e 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/gaphas/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/gaphas/default.nix @@ -12,21 +12,24 @@ buildPythonPackage rec { pname = "gaphas"; - version = "3.8.4"; - disabled = pythonOlder "3.7"; - + version = "3.9.2"; format = "pyproject"; + disabled = pythonOlder "3.7"; + src = fetchPypi { inherit pname version; - sha256 = "sha256-dfAkjPcA/fW50fsOT6lqwPRsdvkVUThSnKIHUmNm/8U="; + hash = "sha256-hw8aGjsrx6xWPbFybpss5EB3eg6tmxgkXpGiWguLKP4="; }; nativeBuildInputs = [ poetry-core ]; - buildInputs = [ gobject-introspection gtk3 ]; + buildInputs = [ + gobject-introspection + gtk3 + ]; propagatedBuildInputs = [ pycairo @@ -34,12 +37,15 @@ buildPythonPackage rec { typing-extensions ]; - pythonImportsCheck = [ "gaphas" ]; + pythonImportsCheck = [ + "gaphas" + ]; meta = with lib; { description = "GTK+ based diagramming widget"; - maintainers = with maintainers; [ wolfangaukang ]; homepage = "https://github.com/gaphor/gaphas"; + changelog = "https://github.com/gaphor/gaphas/releases/tag/${version}"; license = licenses.asl20; + maintainers = with maintainers; [ wolfangaukang ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/garminconnect/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/garminconnect/default.nix index ec80ad6ba2..53cd5d644f 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/garminconnect/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/garminconnect/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "garminconnect"; - version = "0.1.48"; + version = "0.1.49"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "cyberjunky"; repo = "python-garminconnect"; rev = "refs/tags/${version}"; - hash = "sha256-3HcwIcuZvHZS7eEIIw2wfley/Tdwt8S9HarrJMVYVVw="; + hash = "sha256-K9Q4Ce6agDgjP5rzXVK/koD51IyYKLLnd7JyrOxBs20="; }; propagatedBuildInputs = [ @@ -35,6 +35,7 @@ buildPythonPackage rec { meta = with lib; { description = "Garmin Connect Python API wrapper"; homepage = "https://github.com/cyberjunky/python-garminconnect"; + changelog = "https://github.com/cyberjunky/python-garminconnect/releases/tag/${version}"; license = licenses.mit; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/gcal-sync/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/gcal-sync/default.nix index 110b04f658..d2cd8b7740 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/gcal-sync/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/gcal-sync/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "gcal-sync"; - version = "4.0.4"; + version = "4.1.0"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "allenporter"; repo = "gcal_sync"; rev = "refs/tags/${version}"; - hash = "sha256-g0hnwUX33qZ36JgKx3KHP3BciYujQ+Eahe6bF3m87FM="; + hash = "sha256-dmxqN0SE/qAu07ilBnVdV8k3hvpfUPLMtIfqlhSg20U="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ghrepo-stats/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ghrepo-stats/default.nix index 0552dbbf62..154700e89a 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ghrepo-stats/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ghrepo-stats/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "ghrepo-stats"; - version = "0.3.1"; + version = "0.4.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "mrbean-bremen"; repo = pname; rev = "v${version}"; - sha256 = "sha256-W6RhVnMuOgB4GNxczx3UlSeq0RWIM7yISKEvpnrE9uk="; + hash = "sha256-KFjqHrN0prcqu3wEPZpa7rLfuD0X/DN7BMo4zcHNmYo="; }; propagatedBuildInputs = [ @@ -35,6 +35,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python module and CLI tool for GitHub repo statistics"; homepage = "https://github.com/mrbean-bremen/ghrepo-stats"; + changelog = "https://github.com/mrbean-bremen/ghrepo-stats/blob/v${version}/CHANGES.md"; license = licenses.mit; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/gios/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/gios/default.nix index 5597238626..674af37074 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/gios/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/gios/default.nix @@ -12,7 +12,8 @@ buildPythonPackage rec { pname = "gios"; - version = "2.1.0"; + version = "2.3.0"; + format = "setuptools"; disabled = pythonOlder "3.8"; @@ -20,7 +21,7 @@ buildPythonPackage rec { owner = "bieniu"; repo = pname; rev = version; - sha256 = "sha256-WjuDsu0EA+KtErusw5VADyvleVegXHCTEkuQ1lU/SRU="; + hash = "sha256-/lAENP9wKZ+h2Iq2e9S7s7Naa0CTl/I2cwCxBEAwsrA="; }; propagatedBuildInputs = [ @@ -47,11 +48,14 @@ buildPythonPackage rec { "test_invalid_station_id" ]; - pythonImportsCheck = [ "gios" ]; + pythonImportsCheck = [ + "gios" + ]; meta = with lib; { description = "Python client for getting air quality data from GIOS"; homepage = "https://github.com/bieniu/gios"; + changelog = "https://github.com/bieniu/gios/releases/tag/${version}"; license = licenses.asl20; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/globus-sdk/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/globus-sdk/default.nix index b8526212b7..3c2c01f9dc 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/globus-sdk/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/globus-sdk/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "globus-sdk"; - version = "3.15.0"; + version = "3.15.1"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "globus"; repo = "globus-sdk-python"; rev = "refs/tags/${version}"; - hash = "sha256-g4QdVxZmlr4iVL0n/XG+dKm5CCjKO4oi5Xw+lgH+xv8="; + hash = "sha256-qxqGfbrnMvmjbBD7l8OtGKx7WJr65Jbd9y5IyZDXwW4="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/google-cloud-access-context-manager/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/google-cloud-access-context-manager/default.nix index 0f75cccfac..55da4e8747 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/google-cloud-access-context-manager/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/google-cloud-access-context-manager/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "google-cloud-access-context-manager"; - version = "0.1.14"; + version = "0.1.15"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-GFS9VvdXHxP1KvJzQkgjmYXO3qpMXl8yICGZEr18O8M="; + hash = "sha256-W6Nb+H2CaULQ7Hp1hYxtnF9ITYa++Usc7XVoPkQPnVk="; }; propagatedBuildInputs = [ @@ -31,6 +31,7 @@ buildPythonPackage rec { meta = with lib; { description = "Protobufs for Google Access Context Manager"; homepage = "https://github.com/googleapis/python-access-context-manager"; + changelog = "https://github.com/googleapis/python-access-context-manager/blob/v${version}/CHANGELOG.md"; license = licenses.asl20; maintainers = with maintainers; [ austinbutler SuperSandro2000 ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/google-cloud-monitoring/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/google-cloud-monitoring/default.nix index d6d3f5f981..935d82a410 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/google-cloud-monitoring/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/google-cloud-monitoring/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "google-cloud-monitoring"; - version = "2.11.3"; + version = "2.12.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-Nm27yxdf6woQoP37CeNrHggM2Wobv9W9JrmTlx5A4uY="; + hash = "sha256-J0I8P+5BQq1igzKEGtccv66KxPTrzmPErtpx3ornk24="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/google-cloud-spanner/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/google-cloud-spanner/default.nix index 2704b35700..e5e32526a1 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/google-cloud-spanner/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/google-cloud-spanner/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "google-cloud-spanner"; - version = "3.24.0"; + version = "3.26.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-Ko/9gfcR7BBX+U60vlWgdh4d1xptUJRRyWmAGq6a4/E="; + hash = "sha256-d4FJCW0tTVgb+JTL386bYwmSlwEGAGSJAovsNs8kjaI="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/google-nest-sdm/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/google-nest-sdm/default.nix index eefb4d85f9..2b832aa7cf 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/google-nest-sdm/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/google-nest-sdm/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "google-nest-sdm"; - version = "2.1.0"; + version = "2.1.2"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "allenporter"; repo = "python-google-nest-sdm"; rev = "refs/tags/${version}"; - hash = "sha256-gT8Zrjzzunm5nt0GHYY0z2ZxtKBSc6FXndlrStbwo64="; + hash = "sha256-TuAqd9r/iExBa9uxU3386C12ZD+LEJai7DkJtcoupEs="; }; propagatedBuildInputs = [ @@ -56,6 +56,7 @@ buildPythonPackage rec { meta = with lib; { description = "Module for Google Nest Device Access using the Smart Device Management API"; homepage = "https://github.com/allenporter/python-google-nest-sdm"; + changelog = "https://github.com/allenporter/python-google-nest-sdm/releases/tag/${version}"; license = licenses.asl20; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/govee-ble/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/govee-ble/default.nix index 4034dc57cf..7cee9b5713 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/govee-ble/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/govee-ble/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "govee-ble"; - version = "0.19.1"; + version = "0.19.3"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-3uYAyItZ1X18pw3h3rTJpcv2H7O+e4sFCv1R7vb8QPI="; + hash = "sha256-HoEWFwpEzlTVlCD1sPOSKhvZleErxJdaqxKPv+1PcGo="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/griffe/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/griffe/default.nix index e01bf4678c..3c1b875b58 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/griffe/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/griffe/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "griffe"; - version = "0.25.0"; + version = "0.25.1"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "mkdocstrings"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-LOxk1qQmFJ9gzr6M+Q48KKQmkjuKMxKgrc5ZSbNSFHo="; + hash = "sha256-DBjwqQ7tmvpHa0FZYS6Jsb/wQ7cnoynhybBWl9PNejs="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/groestlcoin_hash/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/groestlcoin_hash/default.nix index 859573d1ca..477ff19e33 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/groestlcoin_hash/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/groestlcoin_hash/default.nix @@ -21,6 +21,6 @@ buildPythonPackage rec { description = "Bindings for groestl key derivation function library used in Groestlcoin"; homepage = "https://pypi.org/project/groestlcoin_hash/"; maintainers = with maintainers; [ gruve-p ]; - license = licenses.unfree; + license = licenses.mit; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/hahomematic/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/hahomematic/default.nix index 26b050ae99..4bb4093899 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/hahomematic/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/hahomematic/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "hahomematic"; - version = "2022.12.3"; + version = "2022.12.9"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "danielperna84"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-6xCPkB2QydoJrvwgGGJqmGaw38HCAUs2jPBuXoIBC2Q="; + sha256 = "sha256-Pmgdu22pZOciHveyXY212QPMMPdwvYCc9HshSqBOunE="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/hassil/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/hassil/default.nix new file mode 100644 index 0000000000..bbbe26facc --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/hassil/default.nix @@ -0,0 +1,48 @@ +{ lib +, buildPythonPackage +, fetchPypi + +# propagates +, antlr4-python3-runtime +, dataclasses-json +, pyyaml + +# tests +, pytestCheckHook +}: + +let + pname = "hassil"; + version = "0.1.3"; +in +buildPythonPackage { + inherit pname version; + format = "setuptools"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-KWkzHWMo50OIrZ2kwFhhqDSleFFkAD7/JugjvSyCkww="; + }; + + postPatch = '' + sed -i 's/antlr4-python3-runtime==.*/antlr4-python3-runtime/' requirements.txt + ''; + + propagatedBuildInputs = [ + antlr4-python3-runtime + dataclasses-json + pyyaml + ]; + + checkInputs = [ + pytestCheckHook + ]; + + meta = with lib; { + changelog = "https://github.com/home-assistant/hassil/releases/tag/v${version}"; + description = "Intent parsing for Home Assistant"; + homepage = "https://github.com/home-assistant/hassil"; + license = licenses.asl20; + maintainers = teams.home-assistant.members; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/python-modules/hole/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/hole/default.nix index 3175a8fabb..37ac10cdfc 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/hole/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/hole/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "hole"; - version = "0.7.0"; + version = "0.8.0"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - sha256 = "sha256-yZpzGfB5RTWaRn2DmT+cbSDC0pL16FyUc0Nr/V6TlhU="; + hash = "sha256-zkghLJe1SzN2qOeL23+T2ISjGkuODd9tJA1tO3hw2a0="; }; propagatedBuildInputs = [ @@ -33,6 +33,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python API for interacting with a Pihole instance."; homepage = "https://github.com/home-assistant-ecosystem/python-hole"; + changelog = "https://github.com/home-assistant-ecosystem/python-hole/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/hstspreload/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/hstspreload/default.nix index 0b97ee0174..30b0085ff7 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/hstspreload/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/hstspreload/default.nix @@ -6,7 +6,7 @@ buildPythonPackage rec { pname = "hstspreload"; - version = "2022.11.1"; + version = "2022.12.1"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -15,7 +15,7 @@ buildPythonPackage rec { owner = "sethmlarson"; repo = pname; rev = version; - sha256 = "sha256-4GirKCe84sYV+28ODPipixV3cl7wIV/NOd+iM0Cec4I="; + sha256 = "sha256-W1WJWG5R7Sucdw6TzsGFs5mH6BoUfA8URTgWlnRXa14="; }; # Tests require network connection diff --git a/third_party/nixpkgs/pkgs/development/python-modules/httpie/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/httpie/default.nix index 143822de63..8cf09df8ba 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/httpie/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/httpie/default.nix @@ -50,8 +50,8 @@ buildPythonPackage rec { requests-toolbelt setuptools rich - pysocks - ]; + ] ++ requests.optional-dependencies.socks; + checkInputs = [ pytest-httpbin @@ -64,10 +64,9 @@ buildPythonPackage rec { postInstall = '' # install completions - installShellCompletion --bash \ - --name http.bash extras/httpie-completion.bash - installShellCompletion --fish \ - --name http.fish extras/httpie-completion.fish + installShellCompletion --cmd http \ + --bash extras/httpie-completion.bash \ + --fish extras/httpie-completion.fish # convert the docs/README.md file pandoc --standalone -f markdown -t man docs/README.md -o docs/http.1 @@ -91,6 +90,19 @@ buildPythonPackage rec { disabledTests = [ # flaky "test_stdin_read_warning" + # Re-evaluate those tests with the next release + "test_duplicate_keys_support_from_response" + "test_invalid_xml" + "test_json_formatter_with_body_preceded_by_non_json_data" + "test_pretty_options_with_and_without_stream_with_converter" + "test_response_mime_overwrite" + "test_terminal_output_response_charset_detection" + "test_terminal_output_response_charset_override" + "test_terminal_output_response_content_type_charset_with_stream" + "test_terminal_output_response_content_type_charset" + "test_valid_xml" + "test_xml_format_options" + "test_xml_xhtm" ] ++ lib.optionals stdenv.isDarwin [ # flaky "test_daemon_runner" @@ -99,7 +111,8 @@ buildPythonPackage rec { meta = with lib; { description = "A command line HTTP client whose goal is to make CLI human-friendly"; homepage = "https://httpie.org/"; + changelog = "https://github.com/httpie/httpie/blob/${version}/CHANGELOG.md"; license = licenses.bsd3; - maintainers = with maintainers; [ antono relrod schneefux SuperSandro2000 ]; + maintainers = with maintainers; [ antono relrod schneefux ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/huawei-lte-api/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/huawei-lte-api/default.nix index d15381c560..4843ad39fd 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/huawei-lte-api/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/huawei-lte-api/default.nix @@ -10,23 +10,18 @@ buildPythonPackage rec { pname = "huawei-lte-api"; - version = "1.6.7"; + version = "1.6.10"; format = "setuptools"; - disabled = pythonOlder "3.4"; + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "Salamek"; repo = "huawei-lte-api"; rev = "refs/tags/${version}"; - hash = "sha256-CMGOR5b8Uc8ZIuMlkCkxZqTqUA/Im2RgXK4uFZdoHeU="; + hash = "sha256-dYYZxG5vAR5JT5HIr4jGWYxpy+tGYYXwhB4bzb27ON0="; }; - postPatch = '' - substituteInPlace setup.py \ - --replace "pytest-runner" "" - ''; - propagatedBuildInputs = [ pycryptodomex requests @@ -46,6 +41,7 @@ buildPythonPackage rec { meta = with lib; { description = "API For huawei LAN/WAN LTE Modems"; homepage = "https://github.com/Salamek/huawei-lte-api"; + changelog = "https://github.com/Salamek/huawei-lte-api/releases/tag/${version}"; license = licenses.lgpl3Only; maintainers = with maintainers; [ dotlambda ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/hydra-core/antlr4.patch b/third_party/nixpkgs/pkgs/development/python-modules/hydra-core/antlr4.patch new file mode 100644 index 0000000000..958e128998 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/hydra-core/antlr4.patch @@ -0,0 +1,13 @@ +diff --git a/build_helpers/build_helpers.py b/build_helpers/build_helpers.py +index 7159d22615..73db312bbe 100644 +--- a/build_helpers/build_helpers.py ++++ b/build_helpers/build_helpers.py +@@ -185,7 +185,7 @@ class ANTLRCommand(Command): # type: ignore + command = [ + "java", + "-jar", +- join(root_dir, "bin/antlr-4.9.3-complete.jar"), ++ "@antlr_jar@", + "-Dlanguage=Python3", + "-o", + join(project_root, "hydra/grammar/gen/"), diff --git a/third_party/nixpkgs/pkgs/development/python-modules/hydra/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/hydra-core/default.nix similarity index 60% rename from third_party/nixpkgs/pkgs/development/python-modules/hydra/default.nix rename to third_party/nixpkgs/pkgs/development/python-modules/hydra-core/default.nix index 6d68998220..17dda8404b 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/hydra/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/hydra-core/default.nix @@ -1,6 +1,7 @@ { stdenv , lib -, antlr4_9-python3-runtime +, antlr4 +, antlr4-python3-runtime , buildPythonPackage , fetchFromGitHub , importlib-resources @@ -8,28 +9,44 @@ , omegaconf , pytestCheckHook , pythonOlder +, substituteAll }: buildPythonPackage rec { - pname = "hydra"; - version = "1.3.0"; + pname = "hydra-core"; + version = "1.3.1"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "facebookresearch"; - repo = pname; + repo = "hydra"; rev = "refs/tags/v${version}"; - hash = "sha256-0Wl1TaWZTD6y/SC+7CWKoBfe80lJLmg6DbFJsccSO4M="; + hash = "sha256-4FOh1Jr+LM8ffh/xcAqMqKudKbXb2DZdxU+czq2xwxs="; }; + patches = [ + (substituteAll { + src = ./antlr4.patch; + antlr_jar = "${antlr4.out}/share/java/antlr-${antlr4.version}-complete.jar"; + }) + ]; + + postPatch = '' + # We substitute the path to the jar with the one from our antlr4 + # package, so this file becomes unused + rm -v build_helpers/bin/antlr*-complete.jar + + sed -i 's/antlr4-python3-runtime==.*/antlr4-python3-runtime/' requirements/requirements.txt + ''; + nativeBuildInputs = [ jre_headless ]; propagatedBuildInputs = [ - antlr4_9-python3-runtime + antlr4-python3-runtime omegaconf ] ++ lib.optionals (pythonOlder "3.9") [ importlib-resources @@ -55,7 +72,7 @@ buildPythonPackage rec { ]; meta = with lib; { - broken = (stdenv.isLinux && stdenv.isAarch64) || stdenv.isDarwin; + broken = stdenv.isDarwin; description = "A framework for configuring complex applications"; homepage = "https://hydra.cc"; license = licenses.mit; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ical/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ical/default.nix index e1bed71842..5ec01565e2 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ical/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ical/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "ical"; - version = "4.2.2"; + version = "4.2.8"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "allenporter"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-YvBcfrZiHTornCEAFhNLN/siNvl119pD+o+0yNsRBA8="; + hash = "sha256-vOjsHGB1VJuBEfLAXUkvTbQSFi4mkpf9qROVZo3ZABY="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/identify/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/identify/default.nix index 86ac054259..d9e35db651 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/identify/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/identify/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "identify"; - version = "2.5.9"; + version = "2.5.11"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "pre-commit"; repo = pname; rev = "v${version}"; - sha256 = "sha256-5ISxzOTTlA1EcBO5N6YtBEah0SRehGeVIONj30zOKk0="; + sha256 = "sha256-KnOPrJoHaT0XMhv2HoGKt+a6bsLHouCqZqdl1LlB+9g="; }; checkInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ignite/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ignite/default.nix index 5ab12b4ec6..439d57ff79 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ignite/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ignite/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { checkInputs = [ pytestCheckHook matplotlib mock pytest-xdist torchvision ]; propagatedBuildInputs = [ packaging torch scikit-learn tqdm ]; - # runs succesfully in 3.9, however, async isn't correctly closed so it will fail after test suite. + # runs successfully in 3.9, however, async isn't correctly closed so it will fail after test suite. doCheck = pythonOlder "3.9"; # Some packages are not in NixPkgs; other tests try to build distributed diff --git a/third_party/nixpkgs/pkgs/development/python-modules/immutabledict/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/immutabledict/default.nix index 040e508e86..8a438bf3f0 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/immutabledict/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/immutabledict/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "immutabledict"; - version = "2.2.2"; + version = "2.2.3"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "corenting"; repo = "immutabledict"; rev = "v${version}"; - hash = "sha256-YqUxkpFl2G/LFLtFWqocXbFvgVhqqiquoWNIIO9c/6o="; + hash = "sha256-GeQ1BEBt+66YhohyaXt7rIVNpEk6mINwsC3JrmYNjRI="; }; nativeBuildInputs = [ @@ -35,6 +35,7 @@ buildPythonPackage rec { meta = with lib; { description = "A fork of frozendict, an immutable wrapper around dictionaries"; homepage = "https://github.com/corenting/immutabledict"; + changelog = "https://github.com/corenting/immutabledict/blob/v${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ hexa ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/jaconv/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/jaconv/default.nix index 17f044dbd9..868d5b7c35 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/jaconv/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/jaconv/default.nix @@ -8,16 +8,16 @@ buildPythonPackage rec { pname = "jaconv"; - version = "0.3"; + version = "0.3.1"; format = "setuptools"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "ikegami-yukino"; repo = pname; rev = "v${version}"; - sha256 = "rityHi1JWWlV7+sAxNrlbcmfHmORZWrMZqXTRlsclhQ="; + hash = "sha256-uzGHvklFHVoNloZauczgITeHQIgYQAfI9cjLWgG/vyI="; }; checkInputs = [ @@ -32,6 +32,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python Japanese character interconverter for Hiragana, Katakana, Hankaku and Zenkaku"; homepage = "https://github.com/ikegami-yukino/jaconv"; + changelog = "https://github.com/ikegami-yukino/jaconv/blob/v${version}/CHANGES.rst"; license = licenses.mit; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/jc/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/jc/default.nix index a77d36eca0..f87984dc02 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/jc/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/jc/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "jc"; - version = "1.22.2"; + version = "1.22.3"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "kellyjonbrazil"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-GUzBZ9NCh+70yv40WDGWxQWq0F00oMpZOPQ3Y2AiQTQ="; + sha256 = "sha256-JOhsV4NyY5OW4smDEup1i9MTSQzK4Ldut/VybPB9ulc="; }; propagatedBuildInputs = [ ruamel-yaml xmltodict pygments ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/json-rpc/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/json-rpc/default.nix index e475c3117d..fe15a5383d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/json-rpc/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/json-rpc/default.nix @@ -4,11 +4,11 @@ let pythonEnv = lib.optional isPy27 mock; in buildPythonPackage rec { pname = "json-rpc"; - version = "1.13.0"; + version = "1.14.0"; src = fetchPypi { inherit pname version; - sha256 = "12bmblnznk174hqg2irggx4hd3cq1nczbwkpsqqzr13hbg7xpw6y"; + sha256 = "sha256-/13xx/2G4dvQJZ8GWZdRzpGnx5DykEFHk6Vlq1ht3FI="; }; checkInputs = pythonEnv ++ [ pytestCheckHook ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/jupyterlab/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/jupyterlab/default.nix index afdcf88bde..37f46414b9 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/jupyterlab/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/jupyterlab/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "jupyterlab"; - version = "3.5.1"; + version = "3.5.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-WaGy151LPr7k2ZfIvtjPRQ9GDHw19GthOpPwt3ErR/w="; + sha256 = "sha256-EKwJQhX/uHLd/74pgr8cA5p5/swybhkefMXv2E8zHa0="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/keyring/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/keyring/default.nix index 6ff68d42ca..3815610dad 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/keyring/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/keyring/default.nix @@ -14,13 +14,13 @@ buildPythonPackage rec { pname = "keyring"; - version = "23.11.0"; + version = "23.13.1"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-rRkiY+LN1fEodd7cLaE1NDWafnYOd/jQS1CWioIcI2E="; + hash = "sha256-ui4VqbNeIZCNCq9OCkesxS1q4zRE3w2itJ1BpG721ng="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/kivy/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/kivy/default.nix index 0e8b81ed19..0b91d0bb97 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/kivy/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/kivy/default.nix @@ -11,23 +11,15 @@ buildPythonPackage rec { pname = "Kivy"; - version = "2.0.0"; + version = "2.1.0"; - # use github since pypi line endings are CRLF and patches do not apply src = fetchFromGitHub { owner = "kivy"; repo = "kivy"; rev = version; - sha256 = "sha256-/7GSVQUkYSBEnLVBizMnZAZZxvXVN4r4lskyOgLEcew="; + sha256 = "sha256-k9LIiLtlHY6H1xfVylI/Xbm7R6pCpC5UHe8GWnCwEGA="; }; - patches = [ - (fetchpatch { - url = "https://github.com/kivy/kivy/commit/1c0656c4472817677cf3b08be504de9ca6b1713f.patch"; - sha256 = "sha256-phAjMaC3LQuvufwiD0qXzie5B+kezCf8FpKeQMhy/ms="; - }) - ]; - nativeBuildInputs = [ pkg-config cython diff --git a/third_party/nixpkgs/pkgs/development/python-modules/labelbox/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/labelbox/default.nix index 08a1fa5ca5..15c533c91f 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/labelbox/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/labelbox/default.nix @@ -1,65 +1,103 @@ { lib , backoff -, backports-datetime-fromisoformat , buildPythonPackage , fetchFromGitHub +, geojson , google-api-core -, jinja2 +, imagesize , ndjson +, numpy +, opencv + # , opencv-python +, packaging , pillow , pydantic + # , pygeotile +, pyproj , pytest-cases , pytestCheckHook , pythonOlder +, pythonRelaxDepsHook , rasterio , requests , shapely +, tqdm +, typeguard +, typing-extensions }: buildPythonPackage rec { pname = "labelbox"; - version = "3.24.1"; + version = "3.33.1"; + format = "setuptools"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "Labelbox"; repo = "labelbox-python"; rev = "refs/tags/v.${version}"; - sha256 = "sha256-pcIbCtVOr6pwodgNv8aGZ+k2Z9cQPCQm1UBJWJAlj/o="; + hash = "sha256-lYhgBELeVtNUp6ZvcSTIeKp2YkaGt6MH8BbzSERGHXw="; }; + postPatch = '' + substituteInPlace pytest.ini \ + --replace "-s -vv -x --reruns 5 --reruns-delay 10 --durations=20" "-s -vv -x --durations=20" + ''; + + nativeBuildInputs = [ + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "backoff" + ]; + propagatedBuildInputs = [ backoff - backports-datetime-fromisoformat google-api-core - jinja2 ndjson - pillow pydantic - rasterio requests - shapely + tqdm ]; - postPatch = '' - substituteInPlace setup.py --replace "pydantic==1.8" "pydantic>=1.8" - ''; + passthru.optional-dependencies = { + data = [ + shapely + geojson + numpy + pillow + # opencv-python + typeguard + imagesize + pyproj + # pygeotile + typing-extensions + packaging + ]; + }; checkInputs = [ pytest-cases pytestCheckHook - ]; + ] ++ passthru.optional-dependencies.data; disabledTestPaths = [ # Requires network access "tests/integration" + # Missing requirements + "tests/data" ]; - pythonImportsCheck = [ "labelbox" ]; + pythonImportsCheck = [ + "labelbox" + ]; meta = with lib; { description = "Platform API for LabelBox"; homepage = "https://github.com/Labelbox/labelbox-python"; + changelog = "https://github.com/Labelbox/labelbox-python/blob/v.${version}/CHANGELOG.md"; license = licenses.asl20; maintainers = with maintainers; [ rakesh4g ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ldapdomaindump/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ldapdomaindump/default.nix index 3e1358cd8f..a7e8a5de4a 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ldapdomaindump/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ldapdomaindump/default.nix @@ -1,23 +1,41 @@ -{ lib, buildPythonPackage, fetchPypi, dnspython, future, ldap3 }: +{ lib +, buildPythonPackage +, fetchPypi +, dnspython +, future +, ldap3 +, pythonOlder +}: buildPythonPackage rec { pname = "ldapdomaindump"; - version = "0.9.3"; + version = "0.9.4"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "10cis8cllpa9qi5qil9k7521ag3921mxwg2wj9nyn0lk41rkjagc"; + hash = "sha256-mdzaFwUKllSZZuU7yJ5x2mcAlNU9lUKzsNAZfQNeb1I="; }; - propagatedBuildInputs = [ dnspython future ldap3 ]; + propagatedBuildInputs = [ + dnspython + future + ldap3 + ]; # requires ldap server doCheck = false; - pythonImportsCheck = [ "ldapdomaindump" ]; + + pythonImportsCheck = [ + "ldapdomaindump" + ]; meta = with lib; { description = "Active Directory information dumper via LDAP"; homepage = "https://github.com/dirkjanm/ldapdomaindump/"; + changelog = "https://github.com/dirkjanm/ldapdomaindump/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ SuperSandro2000 ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/levenshtein/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/levenshtein/default.nix index fe554a78ff..afeeea52f3 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/levenshtein/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/levenshtein/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "levenshtein"; - version = "0.20.8"; + version = "0.20.9"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "maxbachmann"; repo = "Levenshtein"; rev = "refs/tags/v${version}"; - hash = "sha256-McTgQa4c+z+ABlm+tOgVf82meXZ1vWlzYCREnkxIfv0="; + hash = "sha256-BPfv3XsAaspLGmztllUYLq6VMKaW+s/Pp18RQmSrilc="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/logging-journald/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/logging-journald/default.nix index 6abd9efeda..7dc0d67e7a 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/logging-journald/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/logging-journald/default.nix @@ -1,21 +1,28 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub +, poetry-core , pythonOlder }: buildPythonPackage rec { pname = "logging-journald"; - version = "0.6.2"; - format = "setuptools"; + version = "0.6.4"; + format = "pyproject"; disabled = pythonOlder "3.7"; - src = fetchPypi { - inherit pname version; - hash = "sha256-U6kqAvMSyLDbThc6wAN/ri0vmt/vAxgFFZT65Csbpss="; + src = fetchFromGitHub { + owner = "mosquito"; + repo = pname; + rev = "refs/tags/${version}"; + hash = "sha256-g8oDFuqTBVutS7Uq7JCN+SXYL7UEQ+7G2nxzndjKAh8="; }; + nativeBuildInputs = [ + poetry-core + ]; + # Circular dependency with aiomisc doCheck = false; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/lupupy/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/lupupy/default.nix index 95d5948a42..ef17ba8f40 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/lupupy/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/lupupy/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "lupupy"; - version = "0.2.3"; + version = "0.2.4"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-GR/sCR8BkqfSLCftLrCAaSYYcaYugX3ItM55+KcghL8="; + hash = "sha256-11BdMhUhxbzkSrBEFdqpjkgcOcCZG498ylEHIMbomW4="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/lxmf/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/lxmf/default.nix index 080ce93389..229d3dfdaa 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/lxmf/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/lxmf/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "lxmf"; - version = "0.2.6"; + version = "0.2.8"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "markqvist"; repo = "lxmf"; rev = "refs/tags/${version}"; - hash = "sha256-3kjg0Q7nXMSjBq2suPtIUvUEGCJr6pTo53ZbjMC5uZ0="; + hash = "sha256-JSr9qLyRg0pMZHuvfo/ZO9/Hwl7ZHTrMGkrcejVRweY="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/masky/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/masky/default.nix index 65108feb43..3a1ea574e6 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/masky/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/masky/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "masky"; - version = "0.1.1"; + version = "0.1.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "Z4kSec"; repo = "Masky"; rev = "refs/tags/v${version}"; - hash = "sha256-uxq4SBudxFbBiV3Cu+oBRKezIWf5p+8VJlIIqQjtSXA="; + hash = "sha256-awPPpdw6/zlVa7/DY1iafrbqIHJERN5+cfX1bTnCjl0="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/mathlibtools/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/mathlibtools/default.nix index 02a6b5348e..bf50e7fdd6 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/mathlibtools/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/mathlibtools/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "mathlibtools"; - version = "1.3.1"; + version = "1.3.2"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-HwtmrDGInCI5Hl+qhl+7hOBJ3Ux0g8IjoAVa4iAccl8="; + hash = "sha256-mkn0y3NV/acnkqVzi8xd+Sex4QLvxxmt++FtsZmgrGs="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/meshtastic/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/meshtastic/default.nix index 9c88db4f88..50eefb8109 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/meshtastic/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/meshtastic/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "meshtastic"; - version = "2.0.6"; + version = "2.0.7"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "meshtastic"; repo = "Meshtastic-python"; rev = "refs/tags/${version}"; - hash = "sha256-PN09TaJZR/REQPIgrm9XR+mXvR1evMAWGQziAzpg+fE="; + hash = "sha256-2CzWX+hMH1gN9WytRUf9BGiJ/bfEu2e0Kzg4ScDMrBo="; }; propagatedBuildInputs = [ @@ -94,6 +94,7 @@ buildPythonPackage rec { "test_main_setPref_invalid_field" "test_main_setPref_valid_field_int_as_string" "test_readGPIOs" + "test_onGPIOreceive" "test_setURL_empty_url" "test_watchGPIOs" "test_writeConfig_with_no_radioConfig" diff --git a/third_party/nixpkgs/pkgs/development/python-modules/mezzanine/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/mezzanine/default.nix index 2c5346e576..d9e537b057 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/mezzanine/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/mezzanine/default.nix @@ -55,7 +55,7 @@ buildPythonPackage rec { # Tests Fail Due to Syntax Warning, Fixed for v3.1.11+ doCheck = false; - # sed calls will be unecessary in v3.1.11+ + # sed calls will be unnecessary in v3.1.11+ preConfigure = '' sed -i 's/==/>=/' setup.py ''; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/mip/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/mip/default.nix new file mode 100644 index 0000000000..6b1c353c23 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/mip/default.nix @@ -0,0 +1,78 @@ +{ lib +, buildPythonPackage +, cffi +, dos2unix +, fetchPypi +, matplotlib +, networkx +, numpy +, pytestCheckHook +, pythonOlder +, gurobi +, gurobipy +# Enable support for the commercial Gurobi solver (requires a license) +, gurobiSupport ? false +# If Gurobi has already been installed outside of the Nix store, specify its +# installation directory here +, gurobiHome ? null +}: + +buildPythonPackage rec { + pname = "mip"; + version = "1.14.1"; + + disabled = pythonOlder "3.7"; + format = "pyproject"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-bvpm5vUp15fbv/Sw1Lx70ihA7VHsSUzwFzoFDG+Ow1M="; + }; + + checkInputs = [ matplotlib networkx numpy pytestCheckHook ]; + nativeBuildInputs = [ dos2unix ]; + propagatedBuildInputs = [ + cffi + ] ++ lib.optionals gurobiSupport ([ + gurobipy + ] ++ lib.optional (builtins.isNull gurobiHome) gurobi); + + # Source files have CRLF terminators, which make patch error out when supplied + # with diffs made on *nix machines + prePatch = '' + find . -type f -exec ${dos2unix}/bin/dos2unix {} \; + ''; + + patches = [ + # Some tests try to be smart and dynamically construct a path to their test + # inputs. Unfortunately, since the test phase is run after installation, + # those paths point to the Nix store, which no longer contains the test + # data. This patch hardcodes the data path to point to the source directory. + ./test-data-path.patch + ]; + + postPatch = '' + # Allow cffi versions with a different patch level to be used + substituteInPlace pyproject.toml --replace "cffi==1.15.0" "cffi==1.15.*" + ''; + + # Make MIP use the Gurobi solver, if configured to do so + makeWrapperArgs = lib.optional gurobiSupport + "--set GUROBI_HOME ${if builtins.isNull gurobiHome then gurobi.outPath else gurobiHome}"; + + # Tests that rely on Gurobi are activated only when Gurobi support is enabled + disabledTests = lib.optional (!gurobiSupport) "gurobi"; + + passthru.optional-dependencies = { + inherit gurobipy numpy; + }; + + meta = with lib; { + homepage = "http://python-mip.com/"; + description = "A collection of Python tools for the modeling and solution of Mixed-Integer Linear programs (MIPs)"; + downloadPage = "https://github.com/coin-or/python-mip/releases"; + changelog = "https://github.com/coin-or/python-mip/releases/tag/${version}"; + license = licenses.epl20; + maintainers = with maintainers; [ nessdoor ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/python-modules/mip/test-data-path.patch b/third_party/nixpkgs/pkgs/development/python-modules/mip/test-data-path.patch new file mode 100644 index 0000000000..d96f342549 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/mip/test-data-path.patch @@ -0,0 +1,30 @@ +diff --git a/examples/extract_features_mip.py b/examples/extract_features_mip.py +index cdc109f..90e79fa 100644 +--- a/examples/extract_features_mip.py ++++ b/examples/extract_features_mip.py +@@ -9,9 +9,7 @@ import mip + lp_path = "" + + # using test data, replace with your instance +-lp_path = mip.__file__.replace("mip/__init__.py", "test/data/1443_0-9.lp").replace( +- "mip\\__init__.py", "test\\data\\1443_0-9.lp" +-) ++lp_path = "test/data/1443_0-9.lp" + + m = Model() + if m.solver_name.upper() in ["GRB", "GUROBI"]: +diff --git a/examples/gen_cuts_mip.py b/examples/gen_cuts_mip.py +index f71edae..2799734 100644 +--- a/examples/gen_cuts_mip.py ++++ b/examples/gen_cuts_mip.py +@@ -11,9 +11,7 @@ import mip + lp_path = "" + + # using test data +-lp_path = mip.__file__.replace("mip/__init__.py", "test/data/1443_0-9.lp").replace( +- "mip\\__init__.py", "test\\data\\1443_0-9.lp" +-) ++lp_path = "test/data/1443_0-9.lp" + + m = Model() + if m.solver_name.upper() in ["GRB", "GUROBI"]: diff --git a/third_party/nixpkgs/pkgs/development/python-modules/mongoquery/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/mongoquery/default.nix new file mode 100644 index 0000000000..c6034ce276 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/mongoquery/default.nix @@ -0,0 +1,33 @@ +{ lib +, buildPythonPackage +, fetchPypi +, six +, isPy27 +}: + +buildPythonPackage rec { + pname = "mongoquery"; + version = "1.4.2"; + + disabled = isPy27; + + src = fetchPypi { + inherit pname version; + sha256 = "bd19fc465f0aa9feb3070f144fde41fc68cf28ea32dd3b7565f7df3ab6fc0ac2"; + }; + + propagatedBuildInputs = [ + six + ]; + + pythonImportsCheck = [ + "mongoquery" + ]; + + meta = with lib; { + description = "A python implementation of mongodb queries"; + homepage = "https://github.com/kapouille/mongoquery"; + license = with licenses; [ unlicense ]; + maintainers = with maintainers; [ misuzu ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/python-modules/mouseinfo/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/mouseinfo/default.nix index 683062a790..6f5f5cbe86 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/mouseinfo/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/mouseinfo/default.nix @@ -23,7 +23,7 @@ buildPythonPackage rec { ]; doCheck = false; - # Mouseinfo requires a X server running to import succesfully + # Mouseinfo requires a X server running to import successfully # pythonImportsCheck = [ "mouseinfo" ]; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/msgspec/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/msgspec/default.nix index d11338a0f0..140221e3c6 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/msgspec/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/msgspec/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "msgspec"; - version = "0.10.1"; + version = "0.11.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "jcrist"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-/tu29RIszjzYQKeyYe+8Zkud3L/HBoWdXdpNcilWERs="; + hash = "sha256-g02IvD8ktWvt1BjeoGXIf+YNnLtQ2ALCIW4uomeCe4E="; }; # Requires libasan to be accessible diff --git a/third_party/nixpkgs/pkgs/development/python-modules/mypy-boto3-builder/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/mypy-boto3-builder/default.nix index 9ae495cf55..d9253d5ce0 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/mypy-boto3-builder/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/mypy-boto3-builder/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "mypy-boto3-builder"; - version = "7.12.0"; + version = "7.12.2"; format = "pyproject"; disabled = pythonOlder "3.10"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "youtype"; repo = "mypy_boto3_builder"; rev = "refs/tags/${version}"; - hash = "sha256-YmWQZvSABE0IKvISJWeB0rYryZ9FNTCgS7/lE2/sO04="; + hash = "sha256-G9Y37QC6Co4tUemtmOf5Dawt0VWopWT5/Np0J7sF10k="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/nettigo-air-monitor/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/nettigo-air-monitor/default.nix index 1f23192eaa..35a6b1a613 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/nettigo-air-monitor/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/nettigo-air-monitor/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "nettigo-air-monitor"; - version = "1.5.0"; + version = "1.6.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "bieniu"; repo = pname; rev = version; - hash = "sha256-84cd869k+JZZpjBBoHH2AyIo8ixJzVgpLLRBV4cMNKA="; + hash = "sha256-86YEpn3rI6Y4v0pcNk+/4tHCUzXpXZN5xwV9M/1gZ8U="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/nibe/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/nibe/default.nix index 09188adba6..329aa4d2d0 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/nibe/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/nibe/default.nix @@ -5,6 +5,7 @@ , async-timeout , buildPythonPackage , construct +, exceptiongroup , fetchFromGitHub , pytest-asyncio , pytestCheckHook @@ -15,7 +16,7 @@ buildPythonPackage rec { pname = "nibe"; - version = "1.5.0"; + version = "1.6.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -24,7 +25,7 @@ buildPythonPackage rec { owner = "yozik04"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-X2WcyBjJbS2WuaaYeBpWM+Tw4mmFOjNX/s070u8LN/4="; + hash = "sha256-6pQsVGb26FpoV2LgOrs+Cfq2rATRqbljrVJ+NsZUSuc="; }; nativeBuildInputs = [ @@ -35,6 +36,7 @@ buildPythonPackage rec { async-modbus async-timeout construct + exceptiongroup tenacity ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/nomadnet/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/nomadnet/default.nix index eeb9ebe59e..120aa896aa 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/nomadnet/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/nomadnet/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "nomadnet"; - version = "0.2.8"; + version = "0.3.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "markqvist"; repo = "NomadNet"; rev = "refs/tags/${version}"; - hash = "sha256-Vzi+v+M0LfptNq/6nc3usnf3YLzBwYcij2hAt835Or8="; + hash = "sha256-bpMv7dFX6hQoR8uG8IRy8JaDGLlU50hOPAI6jWmlMWI="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/nvidia-ml-py/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/nvidia-ml-py/default.nix index 3adb6f829a..64ecf95ef5 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/nvidia-ml-py/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/nvidia-ml-py/default.nix @@ -5,13 +5,13 @@ buildPythonPackage rec { pname = "nvidia-ml-py"; - version = "11.515.48"; + version = "11.515.75"; format = "setuptools"; src = fetchPypi { inherit pname version; extension = "tar.gz"; - hash = "sha256-iNLQu9c8Q3B+FXMObRTtxqE3B/siJIlIlCH6T0rX+sY="; + hash = "sha256-48dfBtWjIB3FETbgDljFwTKzvl1gTYbBQ0Jq205BxJA="; }; patches = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/omegaconf/antlr4.patch b/third_party/nixpkgs/pkgs/development/python-modules/omegaconf/antlr4.patch new file mode 100644 index 0000000000..8b9ed34d31 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/omegaconf/antlr4.patch @@ -0,0 +1,13 @@ +diff --git a/build_helpers/build_helpers.py b/build_helpers/build_helpers.py +index 6419e26..9e6c21c 100644 +--- a/build_helpers/build_helpers.py ++++ b/build_helpers/build_helpers.py +@@ -30,7 +30,7 @@ class ANTLRCommand(Command): # type: ignore # pragma: no cover + command = [ + "java", + "-jar", +- str(build_dir / "bin" / "antlr-4.9.3-complete.jar"), ++ "@antlr_jar@", + "-Dlanguage=Python3", + "-o", + str(project_root / "omegaconf" / "grammar" / "gen"), diff --git a/third_party/nixpkgs/pkgs/development/python-modules/omegaconf/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/omegaconf/default.nix index 5aa772310b..7046e6ab17 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/omegaconf/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/omegaconf/default.nix @@ -1,5 +1,6 @@ { lib -, antlr4_9-python3-runtime +, antlr4 +, antlr4-python3-runtime , buildPythonPackage , fetchFromGitHub , jre_minimal @@ -8,6 +9,7 @@ , pytestCheckHook , pythonOlder , pyyaml +, substituteAll }: buildPythonPackage rec { @@ -24,12 +26,27 @@ buildPythonPackage rec { hash = "sha256-Qxa4uIiX5TAyQ5rFkizdev60S4iVAJ08ES6FpNqf8zI="; }; + patches = [ + (substituteAll { + src = ./antlr4.patch; + antlr_jar = "${antlr4.out}/share/java/antlr-${antlr4.version}-complete.jar"; + }) + ]; + + postPatch = '' + # We substitute the path to the jar with the one from our antlr4 + # package, so this file becomes unused + rm -v build_helpers/bin/antlr*-complete.jar + + sed -i 's/antlr4-python3-runtime==.*/antlr4-python3-runtime/' requirements/base.txt + ''; + nativeBuildInputs = [ jre_minimal ]; propagatedBuildInputs = [ - antlr4_9-python3-runtime + antlr4-python3-runtime pyyaml ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/openapi-core/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/openapi-core/default.nix index ea3780c8af..509e5a2184 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/openapi-core/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/openapi-core/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { pname = "openapi-core"; - version = "0.16.2"; + version = "0.16.3"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -36,7 +36,7 @@ buildPythonPackage rec { owner = "p1c2u"; repo = "openapi-core"; rev = "refs/tags/${version}"; - hash = "sha256-i1MeKPVWowB12gE4kIWBjq6zvn2aIVW4ZDK8bKNAP1o="; + hash = "sha256-aej82CXk0bCE5W0+uuSVSvC08D5yoXv0h1wcoABWRoI="; }; postPatch = '' @@ -91,12 +91,8 @@ buildPythonPackage rec { ++ passthru.optional-dependencies.requests; disabledTestPaths = [ - # AttributeError: 'str' object has no attribute '__name__' - #"tests/integration/validation" # Requires secrets and additional configuration "tests/integration/contrib/django/" - # Unable to detect SECRET_KEY and ROOT_URLCONF - "tests/integration/contrib/django/" ]; pythonImportsCheck = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/opensensemap-api/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/opensensemap-api/default.nix index 56edc136c4..4cce64c430 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/opensensemap-api/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/opensensemap-api/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "opensensemap-api"; - version = "0.2.0"; + version = "0.3.0"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - sha256 = "sha256-KSukSPpSbfbEEqTq4zqqo8OT7ptdPrGy2QyQYjErQWI="; + hash = "sha256-lz2G7vXUadhTFgfHpIq9kHfojf+iytjitFZZ7rgqeO8="; }; propagatedBuildInputs = [ @@ -23,7 +23,7 @@ buildPythonPackage rec { async-timeout ]; - # no tests are present + # Module has no tests doCheck = false; pythonImportsCheck = [ @@ -37,6 +37,7 @@ buildPythonPackage rec { available information from the sensor can be retrieved. ''; homepage = "https://github.com/home-assistant-ecosystem/python-opensensemap-api"; + changelog = "https://github.com/home-assistant-ecosystem/python-opensensemap-api/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/packvers/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/packvers/default.nix new file mode 100644 index 0000000000..aae2c02463 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/packvers/default.nix @@ -0,0 +1,44 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pretend +, pyparsing +, pytestCheckHook +, pythonOlder +}: + +buildPythonPackage rec { + pname = "packvers"; + version = "21.5"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "nexB"; + repo = pname; + rev = "refs/tags/${version}"; + hash = "sha256-nCSYL0g7mXi9pGFt24pOXbmmYsaRuB+rRZrygf8DTLE="; + }; + + propagatedBuildInputs = [ + pyparsing + ]; + + checkInputs = [ + pretend + pytestCheckHook + ]; + + pythonImportsCheck = [ + "packvers" + ]; + + meta = with lib; { + description = "Module for version handling of modules"; + homepage = "https://github.com/nexB/dparse2"; + changelog = "https://github.com/nexB/packvers/blob/${version}/CHANGELOG.rst"; + license = with licenses; [ asl20 /* and */ bsd2 ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/python-modules/patiencediff/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/patiencediff/default.nix index e0bc6992af..70a856170c 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/patiencediff/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/patiencediff/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "patiencediff"; - version = "0.2.11"; + version = "0.2.12"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "breezy-team"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-JUcqODJo4F+gIa9kznWyUW65MGkSrVRlOWvjBNQip3A="; + hash = "sha256-BdTsx4UIRRK9fbMXOrgut651YMTowxHDFfitlP7ue2I="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pep8-naming/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pep8-naming/default.nix index 7e9642a2bc..5fd696523d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pep8-naming/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pep8-naming/default.nix @@ -1,31 +1,25 @@ { lib , buildPythonPackage , fetchFromGitHub -, fetchpatch , flake8 , python +, pythonOlder }: buildPythonPackage rec { pname = "pep8-naming"; - version = "0.13.1"; + version = "0.13.3"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "PyCQA"; repo = pname; rev = version; - sha256 = "sha256-NG4hLZcOMKprUyMnzkHRmUCFGyYgvT6ydBQNpgWE9h0="; + hash = "sha256-l7zZUOMWyTxnTbkFkzfABY/eVMKnv0kNJ0UPzJo0W1Y="; }; - patches = [ - # Fixes tests for flake8 => 5 - # Remove on next release - (fetchpatch { - url = "https://github.com/PyCQA/pep8-naming/commit/c8808a0907f64b5d081cff8d3f9443e5ced1474e.patch"; - sha256 = "sha256-4c+a0viS0rXuxj+TuIfgrKZjnrjiJjDoYBbNp3+6Ed0="; - }) - ]; - propagatedBuildInputs = [ flake8 ]; @@ -41,8 +35,9 @@ buildPythonPackage rec { ]; meta = with lib; { - homepage = "https://github.com/PyCQA/pep8-naming"; description = "Check PEP-8 naming conventions, plugin for flake8"; + homepage = "https://github.com/PyCQA/pep8-naming"; + changelog = "https://github.com/PyCQA/pep8-naming/blob/${version}/CHANGELOG.rst"; license = licenses.mit; maintainers = with maintainers; [ eadwu ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pg8000/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pg8000/default.nix index e23d3d2b0b..1e2fc644b2 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pg8000/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pg8000/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "pg8000"; - version = "1.29.3"; + version = "1.29.4"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-yMlU08htf79ZG8g7ANbs4on64XbIM1oYKnVwaZ2iv9w="; + hash = "sha256-dtKqF1ejC8ceAwfa4Yw3TjNqaRI+awRuIGqWYR+iozA="; }; nativeBuildInputs = [ @@ -47,6 +47,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python driver for PostgreSQL"; homepage = "https://github.com/tlocke/pg8000"; + changelog = "https://github.com/tlocke/pg8000#release-notes"; license = with licenses; [ bsd3 ]; maintainers = with maintainers; [ domenkozar ]; platforms = platforms.unix; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pglast/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pglast/default.nix index 03ff7c6ed2..0ef677155b 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pglast/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pglast/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "pglast"; - version = "4.0"; + version = "4.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-GmDM+90joF3+IHjUibeNZX54z6jR8rCC+R/fcJ03dHM="; + hash = "sha256-JXgU2uoMhfqKlQOksbdYZtnJbs7UZKlTxZNo7OIGEig="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/phonenumbers/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/phonenumbers/default.nix index ff8265beac..5123b9be68 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/phonenumbers/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/phonenumbers/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "phonenumbers"; - version = "8.12.57"; + version = "8.13.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-BX0ZZpYvuGs9xEe/rCyOJc7td0UJ5JsYCSahOpmRAxg="; + hash = "sha256-AXn2iNSMDn4WHre52G1YeUCvH1F0+Xwf39iTxZnA2Uo="; }; checkInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/plaid-python/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/plaid-python/default.nix index 114d382bcd..2c14b258a1 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/plaid-python/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/plaid-python/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "plaid-python"; - version = "11.2.0"; + version = "11.3.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-hybWKNy1qicBcTiEc46iwJ/JhNVxqz9ZSSkR4Zm9m6I="; + hash = "sha256-zZGnKFLsT29IX8EK1Tv5I1Ser+9tREzkJcYY6+Fid6o="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/plantuml-markdown/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/plantuml-markdown/default.nix index 25b56e2a42..6da64c1913 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/plantuml-markdown/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/plantuml-markdown/default.nix @@ -11,7 +11,7 @@ }: let pname = "plantuml-markdown"; - version = "3.6.3"; + version = "3.7.3"; in buildPythonPackage { inherit pname version; @@ -20,7 +20,7 @@ buildPythonPackage { owner = "mikitex70"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-y5Z7mjx2+DW8DwSSyy3tLn11rB7daQyyjsoY/QoI6mc="; + sha256 = "sha256-iRIHq4GmYzNq11t61Lz69amOoG54j50Mc32NsaLNHOk="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/plugwise/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/plugwise/default.nix index 303c436974..5762d03e70 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/plugwise/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/plugwise/default.nix @@ -21,7 +21,7 @@ buildPythonPackage rec { pname = "plugwise"; - version = "0.26.0"; + version = "0.27.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -30,7 +30,7 @@ buildPythonPackage rec { owner = pname; repo = "python-plugwise"; rev = "refs/tags/v${version}"; - sha256 = "sha256-WDjZZFl64tYZ7cy7xcLEX2/87TJSOw71QSro6cgE98s="; + sha256 = "sha256-W6aLpm3Z0JQIZcqDu9wH2RFuXfzl0Px61zfIuhm92pk="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pontos/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pontos/default.nix index 5998085756..1364117951 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pontos/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pontos/default.nix @@ -7,15 +7,16 @@ , packaging , poetry-core , pytestCheckHook -, typing-extensions +, python-dateutil , pythonOlder , rich , tomlkit +, typing-extensions }: buildPythonPackage rec { pname = "pontos"; - version = "22.12.0"; + version = "22.12.1"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -24,7 +25,7 @@ buildPythonPackage rec { owner = "greenbone"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-8enSKOVEkYPI/2d2nzDkf1GO15kpMI6xDktroK9Ti2s="; + hash = "sha256-8exFNjZWbnz6B1f7YepitIMyKdQ1KIYqthlWQr32irk="; }; nativeBuildInputs = [ @@ -35,6 +36,7 @@ buildPythonPackage rec { colorful httpx packaging + python-dateutil rich typing-extensions tomlkit diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pre-commit-hooks/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pre-commit-hooks/default.nix index db3aef0b2b..23d4c3f7f5 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pre-commit-hooks/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pre-commit-hooks/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "pre-commit-hooks"; - version = "4.3.0"; + version = "4.4.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "pre-commit"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-qdsSM+7ScSfxhmLAqwi1iraGHrhb5NBee/j+TKr2WUA="; + hash = "sha256-V23pgHQ9GdZ2mukFEMAhkp+dl/CQTGxWHAhF7s1VvHo="; }; propagatedBuildInputs = [ @@ -55,6 +55,7 @@ buildPythonPackage rec { meta = with lib; { description = "Some out-of-the-box hooks for pre-commit"; homepage = "https://github.com/pre-commit/pre-commit-hooks"; + changelog = "https://github.com/pre-commit/pre-commit-hooks/blob/v${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ kalbasit ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/proxmoxer/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/proxmoxer/default.nix index c2c47964a0..4246cc0fed 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/proxmoxer/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/proxmoxer/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "proxmoxer"; - version = "2.0.0"; + version = "2.0.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-phCeJkiY8XxaD4VQCxOzoInkwWQzHU7ZGdHvxNVgifU="; + hash = "sha256-kwD6yJhVTaVAAUVA6k4r6HZy4w+MPDF7DfJBS8wGE/c="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/psrpcore/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/psrpcore/default.nix index 09c624bbdc..ec3bfb1d8d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/psrpcore/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/psrpcore/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "psrpcore"; - version = "0.2.0"; + version = "0.2.1"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "jborean93"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-uX99BsQn1Ckl+2Lt4I0EMZLTKeDrX0mtSc9w5aFpvxQ="; + hash = "sha256-KMSyqXKhNH+i9Y0Mx3DHCwJZOkl4Va2n0zu0TEitslU="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pulumi-aws/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pulumi-aws/default.nix index 7ff24f974e..9bcbf7c5c5 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pulumi-aws/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pulumi-aws/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "pulumi-aws"; # Version is independant of pulumi's. - version = "5.23.0"; + version = "5.24.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "pulumi"; repo = "pulumi-aws"; rev = "refs/tags/v${version}"; - hash = "sha256-YT667WBOnObGpagml9xAj6N+Kdhq3rhx0XspJJXhrUE="; + hash = "sha256-u7tBP9ZETcDsPx562ZMr9I23iGoHsSlhUu382KU1lcE="; }; sourceRoot = "${src.name}/sdk/python"; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyatv/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyatv/default.nix index 644c346e4b..eb960cc49f 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyatv/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyatv/default.nix @@ -14,6 +14,7 @@ , pytest-asyncio , pytest-timeout , pytestCheckHook +, pythonRelaxDepsHook , pythonOlder , requests , srptools @@ -25,24 +26,39 @@ buildPythonPackage rec { version = "0.10.3"; format = "setuptools"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "postlund"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ng5KfW93p2/N2a6lnGbRJC6aWOQgTl0imBLdUIUlDic="; + hash = "sha256-ng5KfW93p2/N2a6lnGbRJC6aWOQgTl0imBLdUIUlDic="; }; postPatch = '' substituteInPlace setup.py \ --replace "pytest-runner" "" - # Remove all version pinning - - substituteInPlace base_versions.txt \ - --replace "protobuf==3.19.1,<4" "protobuf>=3.19.0,<4" ''; + pythonRelaxDeps = [ + "aiohttp" + "async_timeout" + "bitarray" + "chacha20poly1305-reuseable" + "cryptography" + "ifaddr" + "mediafile" + "miniaudio" + "protobuf" + "requests" + "srptools" + "zeroconf" + ]; + + nativeBuildInputs = [ + pythonRelaxDepsHook + ]; + propagatedBuildInputs = [ aiohttp bitarray @@ -72,6 +88,7 @@ buildPythonPackage rec { disabledTestPaths = [ # Test doesn't work in the sandbox "tests/protocols/companion/test_companion_auth.py" + "tests/protocols/mrp/test_mrp_auth.py" ]; __darwinAllowLocalNetworking = true; @@ -83,7 +100,8 @@ buildPythonPackage rec { meta = with lib; { description = "Python client library for the Apple TV"; homepage = "https://github.com/postlund/pyatv"; + changelog = "https://github.com/postlund/pyatv/blob/v${version}/CHANGES.md"; license = licenses.mit; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ fab ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyezviz/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyezviz/default.nix index 4ae751b92d..a647f53150 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyezviz/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyezviz/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "pyezviz"; - version = "0.2.0.10"; + version = "0.2.0.11"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "baqs"; repo = "pyEzviz"; rev = "refs/tags/${version}"; - hash = "sha256-oi2F+OYxiQXq8JlIqbQyjpUuRciMwIaBCh27lvM7TuM="; + hash = "sha256-XG4+UQL8M5G8Y19PNTBAL51XJRE48qorE8FapaiddYI="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyinfra/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyinfra/default.nix index 96a0be843c..dea53f6bb0 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyinfra/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyinfra/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "pyinfra"; - version = "2.5.3"; + version = "2.6"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "Fizzadar"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-1buLaBhhmc4FnROr5M+bqSlsbkfjl58a1/4qWBXE97Y="; + hash = "sha256-SNeucJvjnwQ0o+gukXwEKybBaW01hPtYXCFcPeOuXA8="; }; propagatedBuildInputs = [ @@ -64,6 +64,7 @@ buildPythonPackage rec { ad-hoc command execution, service deployment, configuration management and more. ''; homepage = "https://github.com/Fizzadar/pyinfra"; + changelog = "https://github.com/Fizzadar/pyinfra/blob/v${version}/CHANGELOG.md"; maintainers = with maintainers; [ totoroot ]; license = licenses.mit; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyisy/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyisy/default.nix index f6f812b96f..26dab5b1c7 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyisy/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyisy/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "pyisy"; - version = "3.0.8"; + version = "3.0.9"; src = fetchFromGitHub { owner = "automicus"; repo = "PyISY"; rev = "refs/tags/v${version}"; - hash = "sha256-Q3KewvZJMq4YKrpS6ir5rqZkDhxGACDIhlbr3b6lDAs="; + hash = "sha256-95MUOxWR4YUce0fFcasKc6YjoSHTGhXJcUAg0mbXxCs="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyoverkiz/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyoverkiz/default.nix index f2fd9ebdf2..c82f5cd31d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyoverkiz/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyoverkiz/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "pyoverkiz"; - version = "1.7.2"; + version = "1.7.3"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "iMicknl"; repo = "python-overkiz-api"; rev = "refs/tags/v${version}"; - hash = "sha256-9/xdFwf+r2z166w/4VIj31MahDWmaMdWLfTGot+RoYQ="; + hash = "sha256-hmi6cOBHbcxzA10vQt6fxB8qHrr4My5JFmucV5QCUVg="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyparsing/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyparsing/default.nix index 3d10fca06c..95b1b56009 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyparsing/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyparsing/default.nix @@ -5,45 +5,49 @@ , jinja2 , pytestCheckHook , railroad-diagrams +, pyparsing }: -let - pyparsing = buildPythonPackage rec { - pname = "pyparsing"; - version = "3.0.9"; - format = "pyproject"; +buildPythonPackage rec { + pname = "pyparsing"; + version = "3.0.9"; + format = "pyproject"; - src = fetchFromGitHub { - owner = "pyparsing"; - repo = pname; - rev = "pyparsing_${version}"; - sha256 = "sha256-aCRyJQyLf8qQ6NO41q+HC856TjIHzIt0vyVBLV+3teE="; - }; - - nativeBuildInputs = [ - flit-core - ]; - - # circular dependencies with pytest if enabled by default - doCheck = false; - checkInputs = [ - jinja2 - pytestCheckHook - railroad-diagrams - ]; - - pythonImportsCheck = [ "pyparsing" ]; - - passthru.tests = { - check = pyparsing.overridePythonAttrs (_: { doCheck = true; }); - }; - - meta = with lib; { - homepage = "https://github.com/pyparsing/pyparsing"; - description = "An alternative approach to creating and executing simple grammars, vs. the traditional lex/yacc approach, or the use of regular expressions"; - license = licenses.mit; - maintainers = with maintainers; [ kamadorueda ]; - }; + src = fetchFromGitHub { + owner = "pyparsing"; + repo = pname; + rev = "pyparsing_${version}"; + sha256 = "sha256-aCRyJQyLf8qQ6NO41q+HC856TjIHzIt0vyVBLV+3teE="; }; -in -pyparsing + + nativeBuildInputs = [ + flit-core + ]; + + # circular dependencies with pytest if enabled by default + doCheck = false; + checkInputs = [ + jinja2 + pytestCheckHook + railroad-diagrams + ]; + + pythonImportsCheck = [ "pyparsing" ]; + + passthru.tests = { + check = pyparsing.overridePythonAttrs (_: { doCheck = true; }); + }; + + meta = with lib; { + homepage = "https://github.com/pyparsing/pyparsing"; + description = "Python library for creating PEG parsers"; + longDescription = '' + The pyparsing module is an alternative approach to creating and executing + simple grammars, vs. the traditional lex/yacc approach, or the use of + regular expressions. The pyparsing module provides a library of classes + that client code uses to construct the grammar directly in Python code. + ''; + license = licenses.mit; + maintainers = with maintainers; [ kamadorueda ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyrainbird/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyrainbird/default.nix index 5461dc4452..11e7b778a4 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyrainbird/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyrainbird/default.nix @@ -3,6 +3,7 @@ , fetchFromGitHub , parameterized , pycryptodome +, pytest-aiohttp , pytestCheckHook , pythonOlder , pyyaml @@ -13,7 +14,7 @@ buildPythonPackage rec { pname = "pyrainbird"; - version = "0.6.3"; + version = "0.7.1"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -22,7 +23,7 @@ buildPythonPackage rec { owner = "jbarrancos"; repo = pname; rev = version; - hash = "sha256-yGUBCs1IxbGKBo21gExFIqDawM2EHlO+jiRqonEUnPk="; + hash = "sha256-pN/QILpXJoQAccB7CSDLxCDYfijf/VJbYw+NRUI4kvs="; }; postPatch = '' @@ -41,6 +42,7 @@ buildPythonPackage rec { checkInputs = [ parameterized + pytest-aiohttp pytestCheckHook requests-mock responses @@ -53,6 +55,7 @@ buildPythonPackage rec { meta = with lib; { description = "Module to interact with Rainbird controllers"; homepage = "https://github.com/jbarrancos/pyrainbird/"; + changelog = "https://github.com/jbarrancos/pyrainbird/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyreadstat/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyreadstat/default.nix index c6197fcd74..6bc583ca6e 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyreadstat/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyreadstat/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "pyreadstat"; - version = "1.1.9"; + version = "1.2.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,8 +21,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "Roche"; repo = "pyreadstat"; - rev = "v${version}"; - hash = "sha256-OtvAvZTmcBTGfgp3Ddp9JJuZegr1o6c7rTMOuLwJSpk="; + rev = "refs/tags/v${version}"; + hash = "sha256-Rw+v1+KpjSSZoqhlENKcJiaFhAvcNRbZ3+MA2dOsj4Q="; }; nativeBuildInputs = [ @@ -57,8 +57,9 @@ buildPythonPackage rec { ''; meta = with lib; { - description = "Python package to read SAS, SPSS and Stata files into pandas data frames using the readstat C library"; + description = "Module to read SAS, SPSS and Stata files into pandas data frames"; homepage = "https://github.com/Roche/pyreadstat"; + changelog = "https://github.com/Roche/pyreadstat/blob/v${version}/change_log.md"; license = licenses.asl20; maintainers = with maintainers; [ swflint ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyside2/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyside2/default.nix index 5826ed7be1..9d6a3c6407 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyside2/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyside2/default.nix @@ -1,5 +1,13 @@ -{ python, fetchurl, lib, stdenv, - cmake, ninja, qt5, shiboken2 }: +{ python +, fetchurl +, lib +, stdenv +, cmake +, libxcrypt +, ninja +, qt5 +, shiboken2 +}: stdenv.mkDerivation rec { pname = "pyside2"; @@ -26,12 +34,29 @@ stdenv.mkDerivation rec { NIX_CFLAGS_COMPILE = "-I${qt5.qtdeclarative.dev}/include/QtQuick/${qt5.qtdeclarative.version}/QtQuick"; nativeBuildInputs = [ cmake ninja qt5.qmake python ]; + buildInputs = (with qt5; [ - qtbase qtxmlpatterns qtmultimedia qttools qtx11extras qtlocation qtscript - qtwebsockets qtwebengine qtwebchannel qtcharts qtsensors qtsvg - ]) ++ [ - python.pkgs.setuptools - ]; + qtbase + qtxmlpatterns + qtmultimedia + qttools + qtx11extras + qtlocation + qtscript + qtwebsockets + qtwebengine + qtwebchannel + qtcharts + qtsensors + qtsvg + ]) ++ (with python.pkgs; [ + setuptools + ]) ++ (lib.optionals (python.pythonOlder "3.9") [ + # see similar issue: 202262 + # libxcrypt is required for crypt.h for building older python modules + libxcrypt + ]); + propagatedBuildInputs = [ shiboken2 ]; dontWrapQtApps = true; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pysigma-backend-qradar/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pysigma-backend-qradar/default.nix index 7a88d432e3..00b9659c28 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pysigma-backend-qradar/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pysigma-backend-qradar/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "pysigma-backend-qradar"; - version = "0.2.1"; + version = "0.3.0"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "nNipsx-Sec"; repo = "pySigma-backend-qradar"; rev = "refs/tags/v${version}"; - hash = "sha256-kd/KWO3xxIHPgXqvcOrSvdozLG34+DwZedfSVoZ+dDA="; + hash = "sha256-4QiPBgzlZG3aeYwn9zodZCXY6mjOktgdPWR5ikg/Y30="; }; nativeBuildInputs = [ @@ -48,6 +48,7 @@ buildPythonPackage rec { meta = with lib; { description = "Library to support Qradar for pySigma"; homepage = "https://github.com/nNipsx-Sec/pySigma-backend-qradar"; + changelog = "https://github.com/nNipsx-Sec/pySigma-backend-qradar/releases/tag/v${version}"; license = with licenses; [ lgpl21Only ]; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyskyqremote/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyskyqremote/default.nix index 687fc3c659..1f9533984c 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyskyqremote/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyskyqremote/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pyskyqremote"; - version = "0.3.21"; + version = "0.3.22"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "RogerSelwyn"; repo = "skyq_remote"; rev = "refs/tags/${version}"; - hash = "sha256-SVNvgQe4OonR6sVIMUeMYfs7fjL6JMnVEsQuw7VrJhQ="; + hash = "sha256-sYhB3S6tDIdqGCu+tHvodn0NdIaYIlnE7zbHEjNUNDw="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pysmart/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pysmart/default.nix index 5c576e4895..afc4ae3a7f 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pysmart/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pysmart/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pysmart"; - version = "1.2.1"; + version = "1.2.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "truenas"; repo = "py-SMART"; rev = "refs/tags/v${version}"; - hash = "sha256-slLk4zoW0ht9hiOxyBt0caekjrPgih9G99pRiD2vIxE="; + hash = "sha256-qZJwUxU9LSKXpftBuKFnxI4gygHIuJEwGJqFaBlCudc="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyswitchbot/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyswitchbot/default.nix index 872999bf56..8100fcea51 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyswitchbot/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyswitchbot/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pyswitchbot"; - version = "0.23.2"; + version = "0.30.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "Danielhiversen"; repo = "pySwitchbot"; rev = "refs/tags/${version}"; - hash = "sha256-bpa83uT3Gebwryb7Fc7kBv0m9aYgoL84Q625AavLw40="; + hash = "sha256-5Rn1hQ1TZhRiCJGJCaA1sl+HnerL/oOhRdMiSl1Recg="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pytenable/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pytenable/default.nix index ac2b5d86e5..f4b3e4b43e 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pytenable/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pytenable/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { pname = "pytenable"; - version = "1.4.10"; + version = "1.4.11"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -29,7 +29,7 @@ buildPythonPackage rec { owner = "tenable"; repo = "pyTenable"; rev = "refs/tags/${version}"; - hash = "sha256-BNPfoKXDLUckj/yg1Gz806CS5CyjWvc/Hy/NwnuWfo0="; + hash = "sha256-GSEMjgG8Q+gzHQWRbXr/qiGP6U6ydPxu0JsD56mRNWU="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/python-cinderclient/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/python-cinderclient/default.nix index af09d9327b..8fd4e3d8fb 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/python-cinderclient/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/python-cinderclient/default.nix @@ -17,11 +17,11 @@ buildPythonPackage rec { pname = "python-cinderclient"; - version = "9.1.0"; + version = "9.2.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-+bMK8ubm5aEmwsgfNRRcWu5wwglV5t1AmRm+TRuHs0M="; + sha256 = "sha256-qnYodaJwr0kFfKyofVsDTmMLMYDexqGTz8uSefPWPfQ="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/python-crontab/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/python-crontab/default.nix index 9de0801d53..644d00fb33 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/python-crontab/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/python-crontab/default.nix @@ -1,22 +1,40 @@ -{ lib, buildPythonPackage, fetchPypi, python-dateutil, pytestCheckHook }: +{ lib +, buildPythonPackage +, fetchPypi +, python-dateutil +, pytestCheckHook +, pythonOlder +}: buildPythonPackage rec { pname = "python-crontab"; - version = "2.6.0"; + version = "2.7.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "1e35ed7a3cdc3100545b43e196d34754e6551e7f95e4caebbe0e1c0ca41c2f1b"; + hash = "sha256-shr0ZHx7u4SP7y8CBhbGsCidy5+UtPmRpVMQ/5vsV0k="; }; - checkInputs = [ pytestCheckHook ]; + propagatedBuildInputs = [ + python-dateutil + ]; + + checkInputs = [ + pytestCheckHook + ]; + disabledTests = [ "test_07_non_posix_shell" # doctest that assumes /tmp is writeable, awkward to patch "test_03_usage" ]; - propagatedBuildInputs = [ python-dateutil ]; + pythonImportsCheck = [ + "crontab" + ]; meta = with lib; { description = "Python API for crontab"; @@ -24,7 +42,7 @@ buildPythonPackage rec { Crontab module for reading and writing crontab files and accessing the system cron automatically and simply using a direct API. ''; - homepage = "https://pypi.org/project/python-crontab/"; + homepage = "https://gitlab.com/doctormo/python-crontab/"; license = licenses.lgpl3Plus; maintainers = with maintainers; [ kfollesdal ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/python-engineio/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/python-engineio/default.nix index c9b344e5ac..a23de9c8d7 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/python-engineio/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/python-engineio/default.nix @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "miguelgrinberg"; repo = "python-engineio"; rev = "v${version}"; - sha256 = "sha256-fymO9WqkYaRsHKCJHQJpySHqZor2t8BfVrfYUfYoJno="; + hash = "sha256-fymO9WqkYaRsHKCJHQJpySHqZor2t8BfVrfYUfYoJno="; }; checkInputs = [ @@ -66,6 +66,7 @@ buildPythonPackage rec { bidirectional event-based communication between clients and a server. ''; homepage = "https://github.com/miguelgrinberg/python-engineio/"; + changelog = "https://github.com/miguelgrinberg/python-engineio/blob/v${version}/CHANGES.md"; license = with licenses; [ mit ]; maintainers = with maintainers; [ mic92 ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/python-socketio/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/python-socketio/default.nix index a6b2bc0d24..99cbce9ae1 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/python-socketio/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/python-socketio/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "python-socketio"; - version = "5.7.1"; + version = "5.7.2"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -23,17 +23,24 @@ buildPythonPackage rec { owner = "miguelgrinberg"; repo = "python-socketio"; rev = "v${version}"; - sha256 = "sha256-KVaBSBWLeFJYiNJYTwoExExUmUaeNJ40c/WTgTc2Y/w="; + hash = "sha256-mSFs/k+3Lp5w4WdOLKj65kOA5b+Nc1uuksVmeeqV58E="; }; propagatedBuildInputs = [ - aiohttp bidict python-engineio - requests - websocket-client ]; + passthru.optional-dependencies = { + client = [ + requests + websocket-client + ]; + asyncio_client = [ + aiohttp + ]; + }; + checkInputs = [ mock msgpack @@ -51,6 +58,7 @@ buildPythonPackage rec { bidirectional event-based communication between clients and a server. ''; homepage = "https://github.com/miguelgrinberg/python-socketio/"; + changelog = "https://github.com/miguelgrinberg/python-socketio/blob/v${version}/CHANGES.md"; license = with licenses; [ mit ]; maintainers = with maintainers; [ mic92 ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pytibber/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pytibber/default.nix index a4047483eb..5ad8815509 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pytibber/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pytibber/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "pytibber"; - version = "0.26.4"; + version = "0.26.6"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "Danielhiversen"; repo = "pyTibber"; rev = "refs/tags/${version}"; - hash = "sha256-R++vsJ2CJwPxG/32qam/LRj7GUj3obh9z20xXNMAnQ4="; + hash = "sha256-A/P59fhXlMu1QF1Nc7zeE9q4KgS6ABe7FraZWZPYDys="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pytorch-metric-learning/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pytorch-metric-learning/default.nix index 5ff9f64a4d..239652685e 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pytorch-metric-learning/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pytorch-metric-learning/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "pytorch-metric-learning"; - version = "1.6.2"; + version = "1.6.3"; disabled = isPy27; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "KevinMusgrave"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-y/KqMqxSzTGsjwtbhHbFK+S4CX6yHC6tR6jdPWUzeGg="; + sha256 = "sha256-7ezD3TMmNI9wRBXz5Htz10XZZaSsD0jTpEldGpIot8k="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pytube/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pytube/default.nix index c9ee34c05c..d619c04d9b 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pytube/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pytube/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "pytube"; - version = "12.1.0"; + version = "12.1.2"; disabled = pythonOlder "3.6"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "pytube"; repo = "pytube"; rev = "v${version}"; - hash = "sha256-o4kfZLkEs+XYor2sS2lfuDZkPfHrB+rDoxroc4f55gc="; + hash = "sha256-Y4mriCwFvwAZ3e8kHKo9/S2vReb4q+b8KTHxtQo8SEw="; }; checkInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyunifiprotect/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyunifiprotect/default.nix index 9cf53fb9e2..9d5a289949 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyunifiprotect/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyunifiprotect/default.nix @@ -29,7 +29,7 @@ buildPythonPackage rec { pname = "pyunifiprotect"; - version = "4.5.2"; + version = "4.5.3"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -38,7 +38,7 @@ buildPythonPackage rec { owner = "briis"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-xYDt/vvzI7qIK/8XE6mhcI5GPDKyHRj73Lagn0QOOz0="; + hash = "sha256-FZXnJorY7WNgDVajULZyFwJ13RBbClXK38CCyF7ASmI="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyupgrade/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyupgrade/default.nix index 2e17db7d29..b14fb46e98 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyupgrade/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyupgrade/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "pyupgrade"; - version = "3.1.0"; + version = "3.3.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "asottile"; repo = pname; rev = "v${version}"; - hash = "sha256-OzU3Qv6qdEw0hJdbQ7Q3T6zOGpUt2uZyfy1Fxm3GT0Q="; + hash = "sha256-vg1eNxIkdHM1MMTkCof/ED6nqFhwSgEiKjYmqAyHMp0="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyvex/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyvex/default.nix index 672a70e091..2f82837c5c 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyvex/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyvex/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "pyvex"; - version = "9.2.29"; + version = "9.2.31"; format = "pyproject"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-buqtEiifBKbR7FP08ne5v0nWqkO+d2cVHxNCCZJDrdU="; + hash = "sha256-Te0wFz+3/HVKlMXW5WJ6mRGh8wWiMXR6Ypi/4hvnz/8="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyvicare/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyvicare/default.nix index 96ecf628cb..c594059500 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyvicare/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyvicare/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "pyvicare"; - version = "2.21.0"; + version = "2.22.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "somm15"; repo = "PyViCare"; rev = version; - sha256 = "sha256-zAm1kN5oRVzoRElIabeMmZYuZQHqrgNqHxbVv/UbN/8="; + sha256 = "sha256-1Vfdp0JOqDlt07BCTJXcJ1V0kTzGwCR0ccnGlCYgtEM="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyvisa/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyvisa/default.nix index 3fb0bbd51c..a0c86f9225 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyvisa/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyvisa/default.nix @@ -5,17 +5,20 @@ , setuptools , typing-extensions , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "pyvisa"; - version = "1.12.0"; + version = "1.13.0"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "pyvisa"; repo = "pyvisa"; rev = "refs/tags/${version}"; - hash = "sha256-2khTfj0RRna9YDPOs5kQHHhkeMwv3kTtGyDBYnu+Yhw="; + hash = "sha256-TBu3Xko0IxFBT2vzrsOxqEG3y4XfPzISEtbkWkIaCvM="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pyvmomi/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pyvmomi/default.nix index a2f475f3b3..4f07951be5 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pyvmomi/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pyvmomi/default.nix @@ -1,24 +1,43 @@ -{ lib, buildPythonPackage, fetchFromGitHub, requests, six }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, requests +, six +, pythonOlder +}: buildPythonPackage rec { pname = "pyvmomi"; - version = "7.0.3"; + version = "8.0.0.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "vmware"; repo = pname; - rev = "v${version}"; - sha256 = "07jwlbi3k5kvpmgygvpkhsnbdp9m2ndwqxk9k6kyzfszwcbdx4bk"; + rev = "refs/tags/v${version}"; + hash = "sha256-DVqC5giVMixj9NlGJ2gaH7ybX3hdQsdNTjuTkesao9E="; }; - # requires old version of vcrpy + propagatedBuildInputs = [ + requests + six + ]; + + # Requires old version of vcrpy doCheck = false; - propagatedBuildInputs = [ requests six ]; + pythonImportsCheck = [ + "pyVim" + "pyVmomi" + ]; meta = with lib; { description = "Python SDK for the VMware vSphere API that allows you to manage ESX, ESXi, and vCenter"; homepage = "https://github.com/vmware/pyvmomi"; + changelog = "https://github.com/vmware/pyvmomi/releases/tag/v${version}"; license = licenses.asl20; + maintainers = with maintainers; [ ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/pywayland/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/pywayland/default.nix index 75e427f3da..65f9982244 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/pywayland/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/pywayland/default.nix @@ -10,11 +10,11 @@ buildPythonPackage rec { pname = "pywayland"; - version = "0.4.14"; + version = "0.4.15"; src = fetchPypi { inherit pname version; - hash = "sha256-CXJidzwFvS1ewqYyfpJhwQtqh4TtUfhO9O0iYJpOCy0="; + hash = "sha256-vz7Sjd8KT7UgOBI5AN5q6CS7jl+WL87w91cgm0bXRGw="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/qutip/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/qutip/default.nix index 519cb9957b..1b8c1b8bf3 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/qutip/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/qutip/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "qutip"; - version = "4.7.0"; + version = "4.7.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -26,8 +26,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = pname; repo = pname; - rev = "v${version}"; - hash = "sha256-wGr6uTM6pFL2nvN4zdqPdEO8O3kjrRtKWx8luL1t9Sw="; + rev = "refs/tags/v${version}"; + hash = "sha256-W5iqRWAB6D1Dnxz0Iyl7ZmP3yrXvLyV7BdBdIgFCiQY="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/rapidfuzz/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/rapidfuzz/default.nix index e5a22879fe..63c5e4e396 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/rapidfuzz/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/rapidfuzz/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "rapidfuzz"; - version = "2.13.6"; + version = "2.13.7"; disabled = pythonOlder "3.7"; @@ -28,7 +28,7 @@ buildPythonPackage rec { owner = "maxbachmann"; repo = "RapidFuzz"; rev = "refs/tags/v${version}"; - hash = "sha256-TvauQ5U3+xF01HuYsnmuPn3uqoDSg42vYk2qR9AdBIg="; + hash = "sha256-ZovXYOoLriAmJHptolD135qCn7XHeVvzLJNzI08mqwY="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/rfcat/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/rfcat/default.nix index 0828287ff8..da4f3699a7 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/rfcat/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/rfcat/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "rfcat"; - version = "1.9.6"; + version = "1.9.7"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "atlas0fd00m"; repo = "rfcat"; rev = "refs/tags/v${version}"; - hash = "sha256-7iYz7YY9zpnJmLfCmp/sF21eZ21HMGq2sLQIENxbr34="; + hash = "sha256-VOLA/ZZLazW7u0VYkAHzDh4aaHGr3u09bKVOkhYk6Fk="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ripe-atlas-cousteau/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ripe-atlas-cousteau/default.nix index 6d3c9d5e39..34b22109d8 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ripe-atlas-cousteau/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ripe-atlas-cousteau/default.nix @@ -1,24 +1,27 @@ { lib -, python-dateutil -, python-socketio -, requests -, jsonschema -, pythonOlder -, pytestCheckHook , buildPythonPackage , fetchFromGitHub +, jsonschema +, pytestCheckHook +, python-dateutil +, python-socketio +, pythonOlder +, requests }: buildPythonPackage rec { pname = "ripe-atlas-cousteau"; version = "1.5.1"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "RIPE-NCC"; repo = pname; rev = "v${version}"; - sha256 = "sha256-EHZt9Po/1wDwDacXUCVGcuVSOwcIkPCT2JCKGchu8G4="; + hash = "sha256-EHZt9Po/1wDwDacXUCVGcuVSOwcIkPCT2JCKGchu8G4="; }; postPatch = '' @@ -30,7 +33,7 @@ buildPythonPackage rec { python-dateutil requests python-socketio - ]; + ] ++ python-socketio.optional-dependencies.client; checkInputs = [ pytestCheckHook @@ -44,6 +47,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python client library for RIPE ATLAS API"; homepage = "https://github.com/RIPE-NCC/ripe-atlas-cousteau"; + changelog = "https://github.com/RIPE-NCC/ripe-atlas-cousteau/blob/v${version}/CHANGES.rst"; license = licenses.gpl3Only; maintainers = with maintainers; [ raitobezarius ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/rmrl/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/rmrl/default.nix index 747fba8302..48a33ca47c 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/rmrl/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/rmrl/default.nix @@ -1,7 +1,7 @@ { lib , buildPythonPackage , pythonOlder -, fetchPypi +, fetchFromGitHub , poetry-core , pdfrw , reportlab @@ -12,15 +12,17 @@ buildPythonPackage rec { pname = "rmrl"; - version = "0.2.1"; + version = "unstable-2022-12-11"; disabled = pythonOlder "3.7"; format = "pyproject"; - src = fetchPypi { - inherit pname version; - sha256 = "c532bef4168350e6ab17cf37c6481dc12b6a78e007c073503f082f36215b71c9"; + src = fetchFromGitHub { + owner = "naturale0"; + repo = "rmrl"; + rev = "3c908536f11dfa92f81e7127ae76f18f0b2cc3e3"; + hash = "sha256-13pMfRe2McWDpBTlJy/TBT0W5wyd0EXDoocxeIzmqCo="; }; nativeBuildInputs = [ @@ -42,7 +44,7 @@ buildPythonPackage rec { meta = { description = "Render reMarkable documents to PDF"; - homepage = "https://github.com/rschroll/rmrl"; + homepage = "https://github.com/naturale0/rmrl"; license = lib.licenses.gpl3Plus; maintainers = with lib.maintainers; [ dotlambda ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/rns/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/rns/default.nix index 2ae91cff1a..92b581a7aa 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/rns/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/rns/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "rns"; - version = "0.4.2"; + version = "0.4.6"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "markqvist"; repo = "Reticulum"; rev = "refs/tags/${version}"; - hash = "sha256-EvlGi/HlaPq3SYJDtGLwV58BKi7EZDCSAAxlSUqwztk="; + hash = "sha256-duWlglazdvWnX4rgcaoz3JbMPIDxJfx7BFUMNEQs0q4="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ropgadget/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ropgadget/default.nix index 36bd4eaf7b..165cfd2ebb 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ropgadget/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ropgadget/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "ropgadget"; - version = "7.1"; + version = "7.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "JonathanSalwan"; repo = "ROPgadget"; rev = "refs/tags/v${version}"; - hash = "sha256-eVRQQ8VmjT8wTpiTK2Emr1tEpSwFJPbMc1fa2Zh3mT0="; + hash = "sha256-JvGDnMh42CbdsbE8jM3jD/4JMl6XlmkJfojvlBhFWA0="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/rpy2/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/rpy2/default.nix index 4f04a7b5ef..b7e546a01b 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/rpy2/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/rpy2/default.nix @@ -24,13 +24,13 @@ }: buildPythonPackage rec { - version = "3.5.5"; + version = "3.5.6"; pname = "rpy2"; disabled = isPyPy; src = fetchPypi { inherit version pname; - sha256 = "sha256-olLEDiHPTyOsbhO//cuCtZALScMEPtj9MdpcYftY0Dc="; + sha256 = "sha256-NATxAx0tj/ihACZWq445S4rBbdNMpDr2je7RAvOW53E="; }; patches = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/scapy/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/scapy/default.nix index 152be5166c..42a195008d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/scapy/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/scapy/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "scapy"; - version = "2.4.5"; + version = "2.5.0"; disabled = isPyPy; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "secdev"; repo = "scapy"; rev = "v${version}"; - sha256 = "0nxci1v32h5517gl9ic6zjq8gc8drwr0n5pz04c91yl97xznnw94"; + sha256 = "sha256-xJlovcxUQOQHfOU0Jgin/ayd2T5fOyeN4Jg0DbLHoeU="; }; patches = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/scikit-hep-testdata/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/scikit-hep-testdata/default.nix index a4fc84d2f6..1e8b6263b8 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/scikit-hep-testdata/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/scikit-hep-testdata/default.nix @@ -6,40 +6,48 @@ , pyyaml , requests , setuptools-scm +, pythonOlder }: buildPythonPackage rec { pname = "scikit-hep-testdata"; - version = "0.4.24"; + version = "0.4.25"; format = "pyproject"; - # fetch from github as we want the data files - # https://github.com/scikit-hep/scikit-hep-testdata/issues/60 + disabled = pythonOlder "3.6"; + src = fetchFromGitHub { owner = "scikit-hep"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-Q9yyzwFQpqN3Q1SmNKDBxdo51uMqKp8xJ9Ilo9eCTV0="; + hash = "sha256-JiQaGyvoECylcJHWR2xm8ob5fA+0FmIEQpTuxxysvlw="; }; + SETUPTOOLS_SCM_PRETEND_VERSION = version; + nativeBuildInputs = [ setuptools-scm ]; + propagatedBuildInputs = [ pyyaml requests - ] ++ lib.optional (!pythonAtLeast "3.9") importlib-resources; - - SETUPTOOLS_SCM_PRETEND_VERSION = version; + ] ++ lib.optional (!pythonAtLeast "3.9") [ + importlib-resources + ]; SKHEP_DATA = 1; # install the actual root files doCheck = false; # tests require networking - pythonImportsCheck = [ "skhep_testdata" ]; + + pythonImportsCheck = [ + "skhep_testdata" + ]; meta = with lib; { homepage = "https://github.com/scikit-hep/scikit-hep-testdata"; description = "A common package to provide example files (e.g., ROOT) for testing and developing packages against"; + changelog = "https://github.com/scikit-hep/scikit-hep-testdata/releases/tag/v${version}"; license = licenses.bsd3; maintainers = with maintainers; [ veprbl ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/scrapy/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/scrapy/default.nix index 3571a783af..4ac91771a4 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/scrapy/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/scrapy/default.nix @@ -95,6 +95,7 @@ buildPythonPackage rec { "test_nested_css" "test_nested_xpath" "test_flavor_detection" + "test_follow_whitespace" # Requires network access "AnonymousFTPTestCase" "FTPFeedStorageTest" diff --git a/third_party/nixpkgs/pkgs/development/python-modules/screenlogicpy/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/screenlogicpy/default.nix index ca137888ce..a31286d7a3 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/screenlogicpy/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/screenlogicpy/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "screenlogicpy"; - version = "0.5.5"; + version = "0.6.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "dieselrabbit"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-1tBr7k7RutCHvea/56J7drl9P+WZ5bQpDeQwhgktc1s="; + hash = "sha256-/ePvq+jFLiIsP1w9YxMl3lbekNRaDhKMjKXoYkCOpn8="; }; checkInputs = [ @@ -41,6 +41,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python interface for Pentair Screenlogic devices"; homepage = "https://github.com/dieselrabbit/screenlogicpy"; + changelog = "https://github.com/dieselrabbit/screenlogicpy/releases/tag/v${version}"; license = with licenses; [ gpl3Only ]; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/sensor-state-data/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/sensor-state-data/default.nix index deb6e817ae..b8b38a7efb 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/sensor-state-data/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/sensor-state-data/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "sensor-state-data"; - version = "2.12.1"; + version = "2.13.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-Ycn62qQ+IMqtuuE/wJPUDlyTiklu2WYrGD+wVXssRFg="; + hash = "sha256-iLHv2rwynpSAKlRn2ezq2VUR7v4oHNJaPg/prlkZo6U="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/sensorpro-ble/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/sensorpro-ble/default.nix index 66d73b041b..694f93be10 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/sensorpro-ble/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/sensorpro-ble/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "sensorpro-ble"; - version = "0.5.0"; + version = "0.5.1"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "Bluetooth-Devices"; repo = pname; rev = "v${version}"; - hash = "sha256-B5WtOl1Va2rqm6PZEUCYakN7mE2zz/edGj+TtwDcS+Y="; + hash = "sha256-D0xHNPsGlNBoHR3LqR6TbVhqXWapzwYsG+uN3kSF1oE="; }; nativeBuildInputs = [ @@ -49,6 +49,7 @@ buildPythonPackage rec { meta = with lib; { description = "Library for Sensorpro BLE devices"; homepage = "https://github.com/Bluetooth-Devices/sensorpro-ble"; + changelog = "https://github.com/Bluetooth-Devices/sensorpro-ble/blob/v${version}/CHANGELOG.md"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/sentry-sdk/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/sentry-sdk/default.nix index ff52a049c7..87834f6c72 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/sentry-sdk/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/sentry-sdk/default.nix @@ -40,7 +40,7 @@ buildPythonPackage rec { pname = "sentry-sdk"; - version = "1.11.1"; + version = "1.12.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -49,7 +49,7 @@ buildPythonPackage rec { owner = "getsentry"; repo = "sentry-python"; rev = "refs/tags/${version}"; - hash = "sha256-2AAi9BrF15TDiv9v2d/UF9JPgJheet33k+7iHqPlw5g="; + hash = "sha256-ugCbjhOZTJ1+DeTKDTQJMIO6wjkqVL5tvPGoRrZKwGI="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/shiboken2/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/shiboken2/default.nix index c4210cfeda..53ea30ca68 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/shiboken2/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/shiboken2/default.nix @@ -1,5 +1,12 @@ -{ python, lib, stdenv, pyside2 -, cmake, qt5, llvmPackages }: +{ python +, lib +, stdenv +, pyside2 +, cmake +, qt5 +, libxcrypt +, llvmPackages +}: stdenv.mkDerivation { pname = "shiboken2"; @@ -17,7 +24,18 @@ stdenv.mkDerivation { CLANG_INSTALL_DIR = llvmPackages.libclang.out; nativeBuildInputs = [ cmake ]; - buildInputs = [ llvmPackages.libclang python python.pkgs.setuptools qt5.qtbase qt5.qtxmlpatterns ]; + + buildInputs = [ + llvmPackages.libclang + python + python.pkgs.setuptools + qt5.qtbase + qt5.qtxmlpatterns + ] ++ (lib.optionals (python.pythonOlder "3.9") [ + # see similar issue: 202262 + # libxcrypt is required for crypt.h for building older python modules + libxcrypt + ]); cmakeFlags = [ "-DBUILD_TESTS=OFF" diff --git a/third_party/nixpkgs/pkgs/development/python-modules/skodaconnect/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/skodaconnect/default.nix index f3997a7355..a3354718c3 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/skodaconnect/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/skodaconnect/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "skodaconnect"; - version = "1.1.27"; + version = "1.2.5"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -20,8 +20,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "lendy007"; repo = pname; - rev = "refs/tags/v${version}"; - hash = "sha256-CK5u2Nx1Z7XPDL5W24XxYCo3GfMYCAqKwxpQ8QTfQ0o="; + rev = "refs/tags/${version}"; + hash = "sha256-Re6ECMaDmg007XHw9Kpa46+oEs+01CzOZzszKzKS4WA="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -55,7 +55,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python module to communicate with Skoda Connect"; homepage = "https://github.com/lendy007/skodaconnect"; - changelog = "https://github.com/lendy007/skodaconnect/releases/tag/v${version}"; + changelog = "https://github.com/lendy007/skodaconnect/releases/tag/${version}"; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/soco/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/soco/default.nix index 578cc6ce2d..ed25bdb37e 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/soco/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/soco/default.nix @@ -47,9 +47,7 @@ buildPythonPackage rec { "soco" ]; - passthru.updateScript = nix-update-script { - attrPath = "python3Packages.${pname}"; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "CLI and library to control Sonos speakers"; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/spacy-transformers/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/spacy-transformers/default.nix index 14969a61b1..068f8ede69 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/spacy-transformers/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/spacy-transformers/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "spacy-transformers"; - version = "1.1.8"; + version = "1.1.9"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-e7YuBEq2yggW5G2pJ0Rjw9z3c1jqgRKCifYSfnzblVs="; + hash = "sha256-2uU6y/rsvNSLpeXL6O9IOQ0RMN0AEMH+/IKH6uufusU="; }; propagatedBuildInputs = [ @@ -30,11 +30,6 @@ buildPythonPackage rec { transformers ]; - postPatch = '' - substituteInPlace setup.cfg \ - --replace "transformers>=3.4.0,<4.22.0" "transformers>=3.4.0 # ,<4.22.0" - ''; - # Test fails due to missing arguments for trfs2arrays(). doCheck = false; @@ -47,6 +42,7 @@ buildPythonPackage rec { meta = with lib; { description = "spaCy pipelines for pretrained BERT, XLNet and GPT-2"; homepage = "https://github.com/explosion/spacy-transformers"; + changelog = "https://github.com/explosion/spacy-transformers/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/sphinxcontrib-katex/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/sphinxcontrib-katex/default.nix index 54ef5bac8b..93dc258cc6 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/sphinxcontrib-katex/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/sphinxcontrib-katex/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "sphinxcontrib-katex"; - version = "0.9.0"; + version = "0.9.3"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-HFs1+9tWl1D5VWY14dPCk+Ewv+ubedhd9DcCSrPQZnQ="; + hash = "sha256-6IUTUc4HOK2e++3qMfT2MVm+cBnfVyohSiyROtiRGzI="; }; propagatedBuildInputs = [ @@ -31,6 +31,7 @@ buildPythonPackage rec { meta = with lib; { description = "Sphinx extension using KaTeX to render math in HTML"; homepage = "https://github.com/hagenw/sphinxcontrib-katex"; + changelog = "https://github.com/hagenw/sphinxcontrib-katex/blob/v${version}/CHANGELOG.rst"; license = licenses.mit; maintainers = with maintainers; [ jluttine ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/sphinxcontrib-plantuml/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/sphinxcontrib-plantuml/default.nix index 20f182b55b..793bf0771b 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/sphinxcontrib-plantuml/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/sphinxcontrib-plantuml/default.nix @@ -3,26 +3,33 @@ , fetchPypi , sphinx , plantuml +, pythonOlder }: buildPythonPackage rec { pname = "sphinxcontrib-plantuml"; - version = "0.24"; + version = "0.24.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-z2Xbc1j3haZJjuA+cZi2aAxiXSjlWzNHX8P2yUNRRR0="; + hash = "sha256-OdLkvEDV4JMSYSmhRPVrbuFfWM+lBItZSOY6Ea/ztYY="; }; + propagatedBuildInputs = [ + sphinx + plantuml + ]; + # No tests included. doCheck = false; - propagatedBuildInputs = [ sphinx plantuml ]; - meta = with lib; { description = "Provides a Sphinx domain for embedding UML diagram with PlantUML"; homepage = "https://github.com/sphinx-contrib/plantuml/"; - maintainers = with maintainers; [ ]; license = with licenses; [ bsd2 ]; + maintainers = with maintainers; [ ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/sphinxcontrib-spelling/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/sphinxcontrib-spelling/default.nix index 1a97d85d9f..8c4900d35b 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/sphinxcontrib-spelling/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/sphinxcontrib-spelling/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "sphinxcontrib-spelling"; - version = "7.6.2"; + version = "7.7.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-oSnV3QwAydQUvN9Zmv3bVbrgHx1UNjbn67CUkborq9Q="; + hash = "sha256-VlYcP2oVWwlGkU5N6YhymFkxVyncGBteTcimj+eN41o="; }; nativeBuildInputs = [ @@ -41,6 +41,7 @@ buildPythonPackage rec { meta = with lib; { description = "Sphinx spelling extension"; homepage = "https://github.com/sphinx-contrib/spelling"; + changelog = "https://github.com/sphinx-contrib/spelling/blob/${version}/docs/source/history.rst"; license = licenses.bsd2; maintainers = with maintainers; [ ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/sphinxext-opengraph/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/sphinxext-opengraph/default.nix index b333d508e1..2f5f1a58d6 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/sphinxext-opengraph/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/sphinxext-opengraph/default.nix @@ -9,13 +9,13 @@ buildPythonPackage rec { pname = "sphinxext-opengraph"; - version = "0.7.3"; + version = "0.7.4"; src = fetchFromGitHub { owner = "wpilibsuite"; repo = "sphinxext-opengraph"; - rev = "v${version}"; - hash = "sha256-KzbtuDTMXsp9yf3hiiG6VzpUbSEm3bOtujApsG37H14="; + rev = "refs/tags/v${version}"; + hash = "sha256-N8448GHg/lR7z7Y4F4vO7z+wAeaboo8Cj0X+HSyToAA="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/spotipy/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/spotipy/default.nix index e81183c02f..01af1111a2 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/spotipy/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/spotipy/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "spotipy"; - version = "2.21.0"; + version = "2.22.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-YhFhqbWqAVaBwu4buIc87i7mtEDYQEDanSpXzWf31eU="; + hash = "sha256-uLnumxbOJZ49utvHi0DzdgzcTMM9t9kwJS7HkJEhdtA="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/sqlalchemy-jsonfield/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/sqlalchemy-jsonfield/default.nix index 8270834ab6..a1bd6d9985 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/sqlalchemy-jsonfield/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/sqlalchemy-jsonfield/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "sqlalchemy-jsonfield"; - version = "1.0.0"; + version = "1.0.1.post0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -22,8 +22,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "penguinolog"; repo = "sqlalchemy_jsonfield"; - rev = version; - sha256 = "015pl4z84spfw8389hk1szlm37jgw2basvbmzmkacdqi0685zx24"; + rev = "refs/tags/${version}"; + sha256 = "sha256-dSvqUXZzr+s/v8QEtqrv6slI7p1akXwAxi68D9ctyuU="; }; SETUPTOOLS_SCM_PRETEND_VERSION = "v${version}"; @@ -49,8 +49,9 @@ buildPythonPackage rec { ]; meta = with lib; { - homepage = "https://github.com/penguinolog/sqlalchemy_jsonfield"; description = "SQLALchemy JSONField implementation for storing dicts at SQL independently from JSON type support"; + homepage = "https://github.com/penguinolog/sqlalchemy_jsonfield"; + changelog = "https://github.com/penguinolog/sqlalchemy_jsonfield/releases/tag/${version}"; license = licenses.asl20; maintainers = with maintainers; [ ivan-tkatchev ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/sqlmap/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/sqlmap/default.nix index 791da716c5..f6378cfce9 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/sqlmap/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/sqlmap/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "sqlmap"; - version = "1.6.11"; + version = "1.6.12"; src = fetchPypi { inherit pname version; - sha256 = "sha256-/zucBRLf5qnRURS0YS3Zv4jxRZYOIGtzPBepQ7a2nvs="; + sha256 = "sha256-RHDW2A9mC0zIpjNqUUhXvWDBWj7r4O+9FTFRYUqoAXw="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ssh-mitm/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ssh-mitm/default.nix index ea2aa9531c..ae703fb48e 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ssh-mitm/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ssh-mitm/default.nix @@ -1,23 +1,21 @@ { lib +, argcomplete , buildPythonPackage , fetchFromGitHub , pythonOlder , colored -, enhancements , packaging , paramiko , pytz , pyyaml -, requests , rich , sshpubkeys -, typeguard , pytestCheckHook }: buildPythonPackage rec { pname = "ssh-mitm"; - version = "2.1.0"; + version = "3.0.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -26,20 +24,18 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-DMXzDgSt1p3ZNGrXnSr79KH33SJNN8U4/94Hoz7Rs+I="; + hash = "sha256-bFxpgzomtcFGf0LfLUR05y3+/8DNhND6EKAmCZcYb5E="; }; propagatedBuildInputs = [ + argcomplete colored - enhancements packaging paramiko pytz pyyaml - requests rich sshpubkeys - typeguard ]; # Module has no tests @@ -52,7 +48,8 @@ buildPythonPackage rec { meta = with lib; { description = "Tool for SSH security audits"; homepage = "https://github.com/ssh-mitm/ssh-mitm"; - license = licenses.lgpl3Only; + changelog = "https://github.com/ssh-mitm/ssh-mitm/blob/${version}/CHANGELOG.md"; + license = licenses.gpl3Only; maintainers = with maintainers; [ fab ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/statmake/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/statmake/default.nix index 70f7c75de4..86ff5e69fe 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/statmake/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/statmake/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "statmake"; - version = "0.5.1"; + version = "0.6.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "daltonmaag"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-BpxjAr65ZQEJ0PSUIPtS78UvJbMG91qkV8py2K/+W2E="; + hash = "sha256-3BZ71JVvj7GCojM8ycu160viPj8BLJ1SiW86Df2fzsw="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/statsmodels/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/statsmodels/default.nix index 0f01870c41..9a6e3cfb66 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/statsmodels/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/statsmodels/default.nix @@ -13,12 +13,12 @@ buildPythonPackage rec { pname = "statsmodels"; - version = "0.13.2"; + version = "0.13.4"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "sha256-d9wpLJk5wDakdvF3D50Il2sFQ32qIpko2nMjEUfN59Q="; + sha256 = "sha256-juXRtp9kvA6TeWZ0Ve41hYSdXmvNPz5I5Yumytrf6tU="; }; nativeBuildInputs = [ cython ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/stone/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/stone/default.nix index 55f74b58fb..f404beb448 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/stone/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/stone/default.nix @@ -28,7 +28,7 @@ buildPythonPackage rec { checkInputs = [ pytestCheckHook mock ]; # try to import from `test` directory, which is exported by the python interpreter - # and cannot be overriden without removing some py3 to py2 support + # and cannot be overridden without removing some py3 to py2 support disabledTestPaths = [ "test/test_tsd_types.py" "test/test_js_client.py" diff --git a/third_party/nixpkgs/pkgs/development/python-modules/striprtf/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/striprtf/default.nix index 0409851070..42d99a101e 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/striprtf/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/striprtf/default.nix @@ -1,16 +1,19 @@ { lib , buildPythonPackage , fetchPypi +, pythonOlder }: buildPythonPackage rec { pname = "striprtf"; - version = "0.0.21"; + version = "0.0.22"; format = "setuptools"; + disabled = pythonOlder "3.7"; + src = fetchPypi { inherit pname version; - sha256 = "sha256-/wqYbdJ+OI/RTODnKB34e7zADHzCPEX0LkTausqFNtY="; + hash = "sha256-T7rb6EJPQStbJjv3L7PA2rTdtXTWCd1NCE9uK4sEQCs="; }; pythonImportsCheck = [ @@ -18,6 +21,7 @@ buildPythonPackage rec { ]; meta = with lib; { + changelog = "https://github.com/joshy/striprtf/blob/v${version}/CHANGELOG.md"; homepage = "https://github.com/joshy/striprtf"; description = "A simple library to convert rtf to text"; maintainers = with maintainers; [ aanderse ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/supervisor/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/supervisor/default.nix index 9af3db2de4..97492250dc 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/supervisor/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/supervisor/default.nix @@ -1,31 +1,46 @@ -{ stdenv, lib, buildPythonPackage, fetchPypi +{ lib +, stdenv +, buildPythonPackage +, fetchPypi , mock -, pytest +, pytestCheckHook +, pythonOlder , setuptools }: buildPythonPackage rec { pname = "supervisor"; - version = "4.2.4"; + version = "4.2.5"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "40dc582ce1eec631c3df79420b187a6da276bbd68a4ec0a8f1f123ea616b97a2"; + sha256 = "sha256-NHYbrhojxYGSKBpRFfsH+/IsmwEzwIFmvv/HD+0+vBI="; }; + propagatedBuildInputs = [ + setuptools + ]; + # wants to write to /tmp/foo which is likely already owned by another # nixbld user on hydra doCheck = !stdenv.isDarwin; - checkInputs = [ mock pytest ]; - checkPhase = '' - pytest - ''; - propagatedBuildInputs = [ setuptools ]; + checkInputs = [ + mock + pytestCheckHook + ]; + + pythonImportsCheck = [ + "supervisor" + ]; meta = with lib; { description = "A system for controlling process state under UNIX"; homepage = "http://supervisord.org/"; + changelog = "https://github.com/Supervisor/supervisor/blob/${version}/CHANGES.rst"; license = licenses.free; # http://www.repoze.org/LICENSE.txt maintainers = with maintainers; [ zimbatm ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/tableaudocumentapi/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/tableaudocumentapi/default.nix index ae6f374836..840407cfa1 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/tableaudocumentapi/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/tableaudocumentapi/default.nix @@ -3,29 +3,40 @@ , fetchPypi , lxml , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "tableaudocumentapi"; - version = "0.10"; + version = "0.11"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-ahR+o4UgFLm/9aFsEqmlwXkcgTjqI0wU2Tl9EjVjLZs="; + hash = "sha256-g6V1UBf+P21FcZkR3PHoUmdmrQwEvjdd1VKhvNmvOys="; }; - propagatedBuildInputs = [ lxml ]; + propagatedBuildInputs = [ + lxml + ]; - checkInputs = [ pytestCheckHook ]; + checkInputs = [ + pytestCheckHook + ]; - pythonImportsCheck = [ "tableaudocumentapi" ]; + pythonImportsCheck = [ + "tableaudocumentapi" + ]; # ModuleNotFoundError: No module named 'test.assets' doCheck = false; meta = with lib; { - description = "A Python module for working with Tableau files"; + description = "Python module for working with Tableau files"; homepage = "https://github.com/tableau/document-api-python"; + changelog = "https://github.com/tableau/document-api-python/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ costrouc ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/tablib/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/tablib/default.nix index ae0217b0eb..39ca2941c0 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/tablib/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/tablib/default.nix @@ -1,14 +1,14 @@ -{ buildPythonPackage -, lib +{ lib +, buildPythonPackage , fetchPypi -, isPy27 , odfpy , openpyxl , pandas -, setuptools-scm , pytestCheckHook -, pytest-cov +, pythonOlder , pyyaml +, setuptools-scm +, tabulate , unicodecsv , xlrd , xlwt @@ -16,27 +16,80 @@ buildPythonPackage rec { pname = "tablib"; - version = "3.2.1"; - disabled = isPy27; + version = "3.3.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-pX8ncLjCJf6+wcseZQEqac8w3Si+gQ4P+Y0CR2jH0PE="; + hash = "sha256-EeAqb4HSVuBmaHfYOXly0QMCMHpUwE/XFX6S+vdAyxA="; }; - nativeBuildInputs = [ setuptools-scm ]; - propagatedBuildInputs = [ xlwt openpyxl pyyaml xlrd odfpy ]; - checkInputs = [ pytestCheckHook pytest-cov unicodecsv pandas ]; + postPatch = '' + substituteInPlace pytest.ini \ + --replace " --cov=tablib --cov=tests --cov-report xml --cov-report term --cov-report html" "" + ''; - # test_tablib needs MarkupPy, which isn't packaged yet - pytestFlagsArray = [ "--ignore=tests/test_tablib.py" ]; + nativeBuildInputs = [ + setuptools-scm + ]; - pythonImportsCheck = [ "tablib" ]; + passthru.optional-dependencies = { + all = [ + # markuppy + odfpy + openpyxl + pandas + pyyaml + tabulate + xlrd + xlwt + ]; + cli = [ + tabulate + ]; + html = [ + # markuppy + ]; + ods = [ + odfpy + ]; + pandas = [ + pandas + ]; + xls = [ + xlrd + xlwt + ]; + xlsx = [ + openpyxl + ]; + yaml = [ + pyyaml + ]; + }; + + checkInputs = [ + pandas + pytestCheckHook + unicodecsv + ]; + + disabledTestPaths = [ + # test_tablib needs MarkupPy, which isn't packaged yet + "tests/test_tablib.py" + ]; + + pythonImportsCheck = [ + "tablib" + ]; meta = with lib; { description = "Format-agnostic tabular dataset library"; homepage = "https://tablib.readthedocs.io/"; changelog = "https://github.com/jazzband/tablib/raw/v${version}/HISTORY.md"; license = licenses.mit; + maintainers = with maintainers; [ ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/tabula-py/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/tabula-py/default.nix index f03c54e72d..c029d7922f 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/tabula-py/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/tabula-py/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "tabula-py"; - version = "2.5.1"; + version = "2.6.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,8 +21,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "chezou"; repo = pname; - rev = "v${version}"; - hash = "sha256-Dfi6LzrLDz9VVDmbeK1dEaWuQosD4tvAH13Q4Mp3smA="; + rev = "refs/tags/v${version}"; + hash = "sha256-L/N4TqVHIlwqVeBKlUq5Oz1VW/105Ov6Yicvnn/lxlI="; }; patches = [ @@ -65,6 +65,7 @@ buildPythonPackage rec { meta = with lib; { description = "Module to extract table from PDF into pandas DataFrame"; homepage = "https://github.com/chezou/tabula-py"; + changelog = "https://github.com/chezou/tabula-py/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/telegraph/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/telegraph/default.nix index a27db889c8..9eb246a99e 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/telegraph/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/telegraph/default.nix @@ -9,26 +9,18 @@ buildPythonPackage rec { pname = "telegraph"; - version = "2.1.0"; - disabled = pythonOlder "3.6"; + version = "2.2.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { repo = "telegraph"; owner = "python273"; - sha256 = "ChlQJu4kHkXUf4gOtW5HS+ThP3eQL7LsyANeS/10pLo="; - rev = "da629de7c00c3b8b0c7ab8ef4bf23caf419a3c6c"; + rev = "refs/tags/v${version}"; + hash = "sha256-xARX8lSOftNVYY4InR5vU4OiguCJJJZv/W76G9eLgNY="; }; - checkInputs = [ pytestCheckHook ]; - - pytestFlagsArray = [ "tests/" ]; - - disabledTests = [ - "test_get_page" - ]; - - doCheck = true; - propagatedBuildInputs = [ requests ]; @@ -39,12 +31,28 @@ buildPythonPackage rec { ]; }; + checkInputs = [ + pytestCheckHook + ]; - pythonImportsCheck = [ "telegraph" ]; + pytestFlagsArray = [ + "tests/" + ]; + + disabledTests = [ + "test_get_page" + ]; + + doCheck = true; + + pythonImportsCheck = [ + "telegraph" + ]; meta = with lib; { - homepage = "https://github.com/python273/telegraph"; description = "Telegraph API wrapper"; + homepage = "https://github.com/python273/telegraph"; + changelog = "https://github.com/python273/telegraph/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ gp2112 ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/teslajsonpy/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/teslajsonpy/default.nix index df2a77387a..c1ec12b33f 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/teslajsonpy/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/teslajsonpy/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "teslajsonpy"; - version = "3.5.1"; + version = "3.6.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "zabuldon"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-rLpjzH5YI+pTW5SxPOqXXnjDxWv0SBzShOvuBXbvF4c="; + hash = "sha256-qxC1nhvisYMfWRTyrkNSpqCKofAmqui23cMRaup8llU="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/torch/bin.nix b/third_party/nixpkgs/pkgs/development/python-modules/torch/bin.nix index 74329e05d2..e9018c123d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/torch/bin.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/torch/bin.nix @@ -20,7 +20,7 @@ let pyVerNoDot = builtins.replaceStrings [ "." ] [ "" ] python.pythonVersion; srcs = import ./binary-hashes.nix version; unsupported = throw "Unsupported system"; - version = "1.13.0"; + version = "1.13.1"; in buildPythonPackage { inherit version; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/torch/binary-hashes.nix b/third_party/nixpkgs/pkgs/development/python-modules/torch/binary-hashes.nix index 86948e33a3..2802ef080e 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/torch/binary-hashes.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/torch/binary-hashes.nix @@ -6,61 +6,62 @@ # To add a new version, run "prefetch.sh 'new-version'" to paste the generated file as follows. version : builtins.getAttr version { - "1.13.0" = { + "1.13.1" = { x86_64-linux-37 = { - name = "torch-1.13.0-cp37-cp37m-linux_x86_64.whl"; - url = "https://download.pytorch.org/whl/cu116/torch-1.13.0%2Bcu116-cp37-cp37m-linux_x86_64.whl"; - hash = "sha256-GRxMQkGgtodNIUUxkHpaQZoYz36ogT0zJSqJlcTwbH4="; + name = "torch-1.13.1-cp37-cp37m-linux_x86_64.whl"; + url = "https://download.pytorch.org/whl/cu116/torch-1.13.1%2Bcu116-cp37-cp37m-linux_x86_64.whl"; + hash = "sha256-INfG4AgEtr6m9pt3JAxPzfJEzOL2sf9zvv98DfZVPZ0="; }; x86_64-linux-38 = { - name = "torch-1.13.0-cp38-cp38-linux_x86_64.whl"; - url = "https://download.pytorch.org/whl/cu116/torch-1.13.0%2Bcu116-cp38-cp38-linux_x86_64.whl"; - hash = "sha256-VsudhAGP8v02zblKMPz5LvZBVX2/OHEMQRoYzvMhUF8="; + name = "torch-1.13.1-cp38-cp38-linux_x86_64.whl"; + url = "https://download.pytorch.org/whl/cu116/torch-1.13.1%2Bcu116-cp38-cp38-linux_x86_64.whl"; + hash = "sha256-kzj6oKWg62JeF+OXKfBvsKV0CY16uI2Fa72ky3agtmU="; }; x86_64-linux-39 = { - name = "torch-1.13.0-cp39-cp39-linux_x86_64.whl"; - url = "https://download.pytorch.org/whl/cu116/torch-1.13.0%2Bcu116-cp39-cp39-linux_x86_64.whl"; - hash = "sha256-Ep2VJJ/iDM2D0VYyOl4qarqD4YhBoArHJOJwrYBt1JM="; + name = "torch-1.13.1-cp39-cp39-linux_x86_64.whl"; + url = "https://download.pytorch.org/whl/cu116/torch-1.13.1%2Bcu116-cp39-cp39-linux_x86_64.whl"; + hash = "sha256-20V6gi1zYBO2/+UJBTABvJGL3Xj+aJZ7YF9TmEqa+sU="; }; x86_64-linux-310 = { - name = "torch-1.13.0-cp310-cp310-linux_x86_64.whl"; - url = "https://download.pytorch.org/whl/cu116/torch-1.13.0%2Bcu116-cp310-cp310-linux_x86_64.whl"; - hash = "sha256-MSGHkzNHdbxjr5Xh6jsYaU6qkCrupf2bMhWrryLq+tA="; + name = "torch-1.13.1-cp310-cp310-linux_x86_64.whl"; + url = "https://download.pytorch.org/whl/cu116/torch-1.13.1%2Bcu116-cp310-cp310-linux_x86_64.whl"; + hash = "sha256-UdWHDN8FtiCLHHOf4LpRG5d+yjf5UHgpZ1WWrMEbbKQ="; }; x86_64-darwin-37 = { - name = "torch-1.13.0-cp37-none-macosx_10_9_x86_64.whl"; - url = "https://download.pytorch.org/whl/cpu/torch-1.13.0-cp37-none-macosx_10_9_x86_64.whl"; - hash = "sha256-zR5n22V14bFzpiYHelTkkREzF4VXqsUGg9sDo04rY2o="; + name = "torch-1.13.1-cp37-none-macosx_10_9_x86_64.whl"; + url = "https://download.pytorch.org/whl/cpu/torch-1.13.1-cp37-none-macosx_10_9_x86_64.whl"; + hash = "sha256-DZuAYQSM+3jmdbnS6oUDv+MNtD1YNZmuhiaxJjoME4A="; }; x86_64-darwin-38 = { - name = "torch-1.13.0-cp38-none-macosx_10_9_x86_64.whl"; - url = "https://download.pytorch.org/whl/cpu/torch-1.13.0-cp38-none-macosx_10_9_x86_64.whl"; - hash = "sha256-75NKIdpvalFtCpxxKoDQnFYSir3Gr43BUb7lGZtMO04="; + name = "torch-1.13.1-cp38-none-macosx_10_9_x86_64.whl"; + url = "https://download.pytorch.org/whl/cpu/torch-1.13.1-cp38-none-macosx_10_9_x86_64.whl"; + hash = "sha256-M+Z+6lJuC7uRUSY+ZUF6nvLY+lPL5ijocxAGDJ3PoxI="; }; x86_64-darwin-39 = { - name = "torch-1.13.0-cp39-none-macosx_10_9_x86_64.whl"; - url = "https://download.pytorch.org/whl/cpu/torch-1.13.0-cp39-none-macosx_10_9_x86_64.whl"; - hash = "sha256-kipJEGE7MQ++uHcH8Ay3b+wyjrYMwTSe0hc+fJtu3Ng="; + name = "torch-1.13.1-cp39-none-macosx_10_9_x86_64.whl"; + url = "https://download.pytorch.org/whl/cpu/torch-1.13.1-cp39-none-macosx_10_9_x86_64.whl"; + hash = "sha256-aTB5HvqHV8tpdK9z1Jlra1DFkogqMkuPsFicapui3a8="; }; x86_64-darwin-310 = { - name = "torch-1.13.0-cp310-none-macosx_10_9_x86_64.whl"; - url = "https://download.pytorch.org/whl/cpu/torch-1.13.0-cp310-none-macosx_10_9_x86_64.whl"; - hash = "sha256-SalJuBNrMrLsByTL9MZni1TpdLfWjxnxIx7qIc3lwjs="; + name = "torch-1.13.1-cp310-none-macosx_10_9_x86_64.whl"; + url = "https://download.pytorch.org/whl/cpu/torch-1.13.1-cp310-none-macosx_10_9_x86_64.whl"; + hash = "sha256-OTpic8gy4EdYEGP7dDNf9QtMVmIXAZzGrOMYzXnrBWY="; }; aarch64-darwin-38 = { - name = "torch-1.13.0-cp38-none-macosx_11_0_arm64.whl"; - url = "https://download.pytorch.org/whl/cpu/torch-1.13.0-cp38-none-macosx_11_0_arm64.whl"; - hash = "sha256-8Bqa4NS2nS/EFF6L6rRbeHc0Ld29SDin08Ecp/ZoB0U="; + name = "torch-1.13.1-cp38-none-macosx_11_0_arm64.whl"; + url = "https://download.pytorch.org/whl/cpu/torch-1.13.1-cp38-none-macosx_11_0_arm64.whl"; + hash = "sha256-7usgTTD9QK9qLYCHm0an77489Dzb64g43U89EmzJCys="; }; aarch64-darwin-39 = { - name = "torch-1.13.0-cp39-none-macosx_11_0_arm64.whl"; - url = "https://download.pytorch.org/whl/cpu/torch-1.13.0-cp39-none-macosx_11_0_arm64.whl"; - hash = "sha256-R/5iKDhr/210MZov/p1O2UPm6FRz146AUCUYxgfWRNI="; + name = "torch-1.13.1-cp39-none-macosx_11_0_arm64.whl"; + url = "https://download.pytorch.org/whl/cpu/torch-1.13.1-cp39-none-macosx_11_0_arm64.whl"; + hash = "sha256-4N+QKnx91seVaYUy7llwzomGcmJWNdiF6t6ZduWgSUk="; }; aarch64-darwin-310 = { - name = "torch-1.13.0-cp310-none-macosx_11_0_arm64.whl"; - url = "https://download.pytorch.org/whl/cpu/torch-1.13.0-cp310-none-macosx_11_0_arm64.whl"; - hash = "sha256-D904yWIwlHse2HD+1KVgJS+NI8Oiv02rnS1CsY8uZ8g="; + name = "torch-1.13.1-cp310-none-macosx_11_0_arm64.whl"; + url = "https://download.pytorch.org/whl/cpu/torch-1.13.1-cp310-none-macosx_11_0_arm64.whl"; + hash = "sha256-ASKAaxEblJ0h+hpfl2TR/S/MSkfLf4/5FCBP1Px1LtU="; }; + }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/torch/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/torch/default.nix index 17ecd3f280..f33c6744c2 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/torch/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/torch/default.nix @@ -65,7 +65,7 @@ let in buildPythonPackage rec { pname = "torch"; # Don't forget to update torch-bin to the same version. - version = "1.13.0"; + version = "1.13.1"; format = "setuptools"; disabled = pythonOlder "3.7.0"; @@ -81,7 +81,7 @@ in buildPythonPackage rec { repo = "pytorch"; rev = "refs/tags/v${version}"; fetchSubmodules = true; - hash = "sha256-jlXd+9fYWePDevXRxsjtL4oEdTWirv1ObH0B4A6o6Q4="; + hash = "sha256-yQz+xHPw9ODRBkV9hv1th38ZmUr/fXa+K+d+cvmX3Z8="; }; patches = lib.optionals (stdenv.isDarwin && stdenv.isx86_64) [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/torchaudio/bin.nix b/third_party/nixpkgs/pkgs/development/python-modules/torchaudio/bin.nix index f4bac910e4..f3656aa0a4 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/torchaudio/bin.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/torchaudio/bin.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "torchaudio"; - version = "0.13.0"; + version = "0.13.1"; format = "wheel"; src = diff --git a/third_party/nixpkgs/pkgs/development/python-modules/torchaudio/binary-hashes.nix b/third_party/nixpkgs/pkgs/development/python-modules/torchaudio/binary-hashes.nix index 6d250f5e42..a5ac20de3e 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/torchaudio/binary-hashes.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/torchaudio/binary-hashes.nix @@ -6,61 +6,61 @@ # To add a new version, run "prefetch.sh 'new-version'" to paste the generated file as follows. version : builtins.getAttr version { - "0.13.0" = { + "0.13.1" = { x86_64-linux-37 = { - name = "torchaudio-0.13.0-cp37-cp37m-linux_x86_64.whl"; - url = "https://download.pytorch.org/whl/cu116/torchaudio-0.13.0%2Bcu116-cp37-cp37m-linux_x86_64.whl"; - hash = "sha256-OvF+dT8O2tLcb4bfIyWLUooFuAjBnYfK+PeuL9WKmWk="; + name = "torchaudio-0.13.1-cp37-cp37m-linux_x86_64.whl"; + url = "https://download.pytorch.org/whl/cu116/torchaudio-0.13.1%2Bcu116-cp37-cp37m-linux_x86_64.whl"; + hash = "sha256-jrztfOrRCFKVNuXqnyeM3GCRDj/K8DDmW9jNLckCEAs="; }; x86_64-linux-38 = { - name = "torchaudio-0.13.0-cp38-cp38-linux_x86_64.whl"; - url = "https://download.pytorch.org/whl/cu116/torchaudio-0.13.0%2Bcu116-cp38-cp38-linux_x86_64.whl"; - hash = "sha256-bdL04MnHV95l93Bht8md/bMZHPKu7L6+PUReWdjZ27Y="; + name = "torchaudio-0.13.1-cp38-cp38-linux_x86_64.whl"; + url = "https://download.pytorch.org/whl/cu116/torchaudio-0.13.1%2Bcu116-cp38-cp38-linux_x86_64.whl"; + hash = "sha256-oESJecUUYoHWYkPa8/+t86rjEj4F4CNpvPpCwZAk5AY="; }; x86_64-linux-39 = { - name = "torchaudio-0.13.0-cp39-cp39-linux_x86_64.whl"; - url = "https://download.pytorch.org/whl/cu116/torchaudio-0.13.0%2Bcu116-cp39-cp39-linux_x86_64.whl"; - hash = "sha256-gY+ISeHQukn5OxpU4h/sfBXGDoMpp2a/ojfsMb/bKfs="; + name = "torchaudio-0.13.1-cp39-cp39-linux_x86_64.whl"; + url = "https://download.pytorch.org/whl/cu116/torchaudio-0.13.1%2Bcu116-cp39-cp39-linux_x86_64.whl"; + hash = "sha256-W8DinLePfEUu608nApxABJdw1RVTv4QLTKLt1j2iie4="; }; x86_64-linux-310 = { - name = "torchaudio-0.13.0-cp310-cp310-linux_x86_64.whl"; - url = "https://download.pytorch.org/whl/cu116/torchaudio-0.13.0%2Bcu116-cp310-cp310-linux_x86_64.whl"; - hash = "sha256-BV1qgrCA1o8wF0gh8F2qGKMaTVph42i4Yhshwibt1cM="; + name = "torchaudio-0.13.1-cp310-cp310-linux_x86_64.whl"; + url = "https://download.pytorch.org/whl/cu116/torchaudio-0.13.1%2Bcu116-cp310-cp310-linux_x86_64.whl"; + hash = "sha256-3vRLFxUB3LmU9aGUjVWWYnBXBe475veBvRHvzTu/zTA="; }; x86_64-darwin-37 = { - name = "torchaudio-0.13.0-cp37-cp37m-macosx_10_9_x86_64.whl"; - url = "https://download.pytorch.org/whl/torchaudio-0.13.0-cp37-cp37m-macosx_10_9_x86_64.whl"; - hash = "sha256-UjOFPP1gy/OmsBlOQB2gqKhXV/SyLc70X+vF00r3src="; + name = "torchaudio-0.13.1-cp37-cp37m-macosx_10_9_x86_64.whl"; + url = "https://download.pytorch.org/whl/torchaudio-0.13.1-cp37-cp37m-macosx_10_9_x86_64.whl"; + hash = "sha256-D6fMGiswVvxs7ubWDbze9YlVp8pTRmfQ25tPye+gh6E="; }; x86_64-darwin-38 = { - name = "torchaudio-0.13.0-cp38-cp38-macosx_10_9_x86_64.whl"; - url = "https://download.pytorch.org/whl/torchaudio-0.13.0-cp38-cp38-macosx_10_9_x86_64.whl"; - hash = "sha256-QuigF0HACNRPZIDOBkbHSF2YwpwBXHNiUWbbEkByn3Y="; + name = "torchaudio-0.13.1-cp38-cp38-macosx_10_9_x86_64.whl"; + url = "https://download.pytorch.org/whl/torchaudio-0.13.1-cp38-cp38-macosx_10_9_x86_64.whl"; + hash = "sha256-Qs5cZtMEvCzWgziRa4Ij4yLgmoTcvZIogU7za8R3o3s="; }; x86_64-darwin-39 = { - name = "torchaudio-0.13.0-cp39-cp39-macosx_10_9_x86_64.whl"; - url = "https://download.pytorch.org/whl/torchaudio-0.13.0-cp39-cp39-macosx_10_9_x86_64.whl"; - hash = "sha256-i/P/vBwdJUJimtHsBkzwG8RiIN53pJo5s2xnB+aMlU8="; + name = "torchaudio-0.13.1-cp39-cp39-macosx_10_9_x86_64.whl"; + url = "https://download.pytorch.org/whl/torchaudio-0.13.1-cp39-cp39-macosx_10_9_x86_64.whl"; + hash = "sha256-nSFwVA3jKuAxqrOTYSmGjoluoEFhe21mkt3mqi37CiM="; }; x86_64-darwin-310 = { - name = "torchaudio-0.13.0-cp310-cp310-macosx_10_9_x86_64.whl"; - url = "https://download.pytorch.org/whl/torchaudio-0.13.0-cp310-cp310-macosx_10_9_x86_64.whl"; - hash = "sha256-K3vMX0qIFMIqZrVa0tjiMBXAgazJkGPtry0VLI+wzns="; + name = "torchaudio-0.13.1-cp310-cp310-macosx_10_9_x86_64.whl"; + url = "https://download.pytorch.org/whl/torchaudio-0.13.1-cp310-cp310-macosx_10_9_x86_64.whl"; + hash = "sha256-Xg89xmmVBlITZCZnBOa/idDQV5/UNdEsXC9YWNUt5Po="; }; aarch64-darwin-38 = { - name = "torchaudio-0.13.0-cp38-cp38-macosx_12_0_arm64.whl"; - url = "https://download.pytorch.org/whl/cpu/torchaudio-0.13.0-cp38-cp38-macosx_12_0_arm64.whl"; - hash = "sha256-qr3i19PWbi1eR0Y0XWGXLifWY2C4/bObnq3KTHOWRxM="; + name = "torchaudio-0.13.1-cp38-cp38-macosx_12_0_arm64.whl"; + url = "https://download.pytorch.org/whl/cpu/torchaudio-0.13.1-cp38-cp38-macosx_12_0_arm64.whl"; + hash = "sha256-sJOz52YchRaOyd3iz5c0WWXqCTHT0qfni9QJIh5taZg="; }; aarch64-darwin-39 = { - name = "torchaudio-0.13.0-cp39-cp39-macosx_12_0_arm64.whl"; - url = "https://download.pytorch.org/whl/cpu/torchaudio-0.13.0-cp39-cp39-macosx_12_0_arm64.whl"; - hash = "sha256-uQnAQRdWGwDV5rZTHTIO2kIjZ4mHoJyDJsFqCyNVbcA="; + name = "torchaudio-0.13.1-cp39-cp39-macosx_12_0_arm64.whl"; + url = "https://download.pytorch.org/whl/cpu/torchaudio-0.13.1-cp39-cp39-macosx_12_0_arm64.whl"; + hash = "sha256-kfz79HAAQC0Sv/JiTmIgoP07jKjub/Ue31lF7DmrCn8="; }; aarch64-darwin-310 = { - name = "torchaudio-0.13.0-cp310-cp310-macosx_12_0_arm64.whl"; - url = "https://download.pytorch.org/whl/cpu/torchaudio-0.13.0-cp310-cp310-macosx_12_0_arm64.whl"; - hash = "sha256-6gUo8Kccm1FRjTBGActHx1N01uq6COFnlMH5lmOuTCA="; + name = "torchaudio-0.13.1-cp310-cp310-macosx_12_0_arm64.whl"; + url = "https://download.pytorch.org/whl/cpu/torchaudio-0.13.1-cp310-cp310-macosx_12_0_arm64.whl"; + hash = "sha256-7HKhfU0heIKed4BoKZm1Nc9X/hYNDCCw1r3BrRqHxN0="; }; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/torchvision/bin.nix b/third_party/nixpkgs/pkgs/development/python-modules/torchvision/bin.nix index 8334f56946..afa862ab47 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/torchvision/bin.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/torchvision/bin.nix @@ -16,7 +16,7 @@ let pyVerNoDot = builtins.replaceStrings [ "." ] [ "" ] python.pythonVersion; srcs = import ./binary-hashes.nix version; unsupported = throw "Unsupported system"; - version = "0.14.0"; + version = "0.14.1"; in buildPythonPackage { inherit version; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/torchvision/binary-hashes.nix b/third_party/nixpkgs/pkgs/development/python-modules/torchvision/binary-hashes.nix index 5ebf5b6f01..7a46e5650b 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/torchvision/binary-hashes.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/torchvision/binary-hashes.nix @@ -6,61 +6,61 @@ # To add a new version, run "prefetch.sh 'new-version'" to paste the generated file as follows. version : builtins.getAttr version { - "0.14.0" = { + "0.14.1" = { x86_64-linux-37 = { - name = "torchvision-0.14.0-cp37-cp37m-linux_x86_64.whl"; - url = "https://download.pytorch.org/whl/cu116/torchvision-0.14.0%2Bcu116-cp37-cp37m-linux_x86_64.whl"; - hash = "sha256-IuZAWuVKUv+kIppkj4EjqaqHbPEidmpOhFzaOkQOIws="; + name = "torchvision-0.14.1-cp37-cp37m-linux_x86_64.whl"; + url = "https://download.pytorch.org/whl/cu116/torchvision-0.14.1%2Bcu116-cp37-cp37m-linux_x86_64.whl"; + hash = "sha256-SYVxnGbJYS/0uy06U8P6r92TQVKyqHQU0nvceHSkNg8="; }; x86_64-linux-38 = { - name = "torchvision-0.14.0-cp38-cp38-linux_x86_64.whl"; - url = "https://download.pytorch.org/whl/cu116/torchvision-0.14.0%2Bcu116-cp38-cp38-linux_x86_64.whl"; - hash = "sha256-DsInXsr//MOf2YwXPhVDo5ZeL86TPwzqeNpjRAPk2bk="; + name = "torchvision-0.14.1-cp38-cp38-linux_x86_64.whl"; + url = "https://download.pytorch.org/whl/cu116/torchvision-0.14.1%2Bcu116-cp38-cp38-linux_x86_64.whl"; + hash = "sha256-R1k1helxw+DJgPq/v7iF61/wVHFrqlVWYMWwMEyeo50="; }; x86_64-linux-39 = { - name = "torchvision-0.14.0-cp39-cp39-linux_x86_64.whl"; - url = "https://download.pytorch.org/whl/cu116/torchvision-0.14.0%2Bcu116-cp39-cp39-linux_x86_64.whl"; - hash = "sha256-0kLPJk8atPVYMCjFqK1Q1YhIA8m4NpkspayPdT5L6Ow="; + name = "torchvision-0.14.1-cp39-cp39-linux_x86_64.whl"; + url = "https://download.pytorch.org/whl/cu116/torchvision-0.14.1%2Bcu116-cp39-cp39-linux_x86_64.whl"; + hash = "sha256-qfw4BA4TPRd58TG0SXyu+DDp5pn6+JzTI81YeU/7MFs="; }; x86_64-linux-310 = { - name = "torchvision-0.14.0-cp310-cp310-linux_x86_64.whl"; - url = "https://download.pytorch.org/whl/cu116/torchvision-0.14.0%2Bcu116-cp310-cp310-linux_x86_64.whl"; - hash = "sha256-65W6LC8V57riwtmKi95b8L4aHBcMgZSBUepkho7Q6Yc="; + name = "torchvision-0.14.1-cp310-cp310-linux_x86_64.whl"; + url = "https://download.pytorch.org/whl/cu116/torchvision-0.14.1%2Bcu116-cp310-cp310-linux_x86_64.whl"; + hash = "sha256-/LWNQb+V3YuF04j6GWnR3K1V7sBV4xeYHWU6BcTKbYs="; }; x86_64-darwin-37 = { - name = "torchvision-0.14.0-cp37-cp37m-macosx_10_9_x86_64.whl"; - url = "https://download.pytorch.org/whl/torchvision-0.14.0-cp37-cp37m-macosx_10_9_x86_64.whl"; - hash = "sha256-9rQd9eTa9u4hthrlp3q8znv30PdZbJILpJGf57dyfyA="; + name = "torchvision-0.14.1-cp37-cp37m-macosx_10_9_x86_64.whl"; + url = "https://download.pytorch.org/whl/torchvision-0.14.1-cp37-cp37m-macosx_10_9_x86_64.whl"; + hash = "sha256-+3p5P9M84avsJLQneEGaP7HjFZ19/LJ0o8qPuMvECNw="; }; x86_64-darwin-38 = { - name = "torchvision-0.14.0-cp38-cp38-macosx_10_9_x86_64.whl"; - url = "https://download.pytorch.org/whl/torchvision-0.14.0-cp38-cp38-macosx_10_9_x86_64.whl"; - hash = "sha256-ASPQKAxUeql2aVSSixq5ryElqIYfU68jwH5Wru8PJSA="; + name = "torchvision-0.14.1-cp38-cp38-macosx_10_9_x86_64.whl"; + url = "https://download.pytorch.org/whl/torchvision-0.14.1-cp38-cp38-macosx_10_9_x86_64.whl"; + hash = "sha256-aO0DNZ3NPanNIbirlNohFY34pqDFutC/SkLw5EjSjLM="; }; x86_64-darwin-39 = { - name = "torchvision-0.14.0-cp39-cp39-macosx_10_9_x86_64.whl"; - url = "https://download.pytorch.org/whl/torchvision-0.14.0-cp39-cp39-macosx_10_9_x86_64.whl"; - hash = "sha256-amqnKATP+VUMu4kPmMfp/yas38SAZNESn68bv+r2Cgo="; + name = "torchvision-0.14.1-cp39-cp39-macosx_10_9_x86_64.whl"; + url = "https://download.pytorch.org/whl/torchvision-0.14.1-cp39-cp39-macosx_10_9_x86_64.whl"; + hash = "sha256-xedE9W5fW0Ut61/A8/K6TS8AYS0U2NoNvv6o8JrHaQs="; }; x86_64-darwin-310 = { - name = "torchvision-0.14.0-cp310-cp310-macosx_10_9_x86_64.whl"; - url = "https://download.pytorch.org/whl/torchvision-0.14.0-cp310-cp310-macosx_10_9_x86_64.whl"; - hash = "sha256-e24XBnYOrOAlfrsGd0BM3WT0z4iAS8Y3n2lM8+1HBZE="; + name = "torchvision-0.14.1-cp310-cp310-macosx_10_9_x86_64.whl"; + url = "https://download.pytorch.org/whl/torchvision-0.14.1-cp310-cp310-macosx_10_9_x86_64.whl"; + hash = "sha256-7rBd2d069UKP7lJUAHWdr42o5MrsRd3WkIz7NlcfZDM="; }; aarch64-darwin-38 = { - name = "torchvision-0.14.0-cp38-cp38-macosx_11_0_arm64.whl"; - url = "https://download.pytorch.org/whl/cpu/torchvision-0.14.0-cp38-cp38-macosx_11_0_arm64.whl"; - hash = "sha256-aBEEGMgzoQFT44KwOUWY3RaauCOiFoE5x7T2LqSKREY="; + name = "torchvision-0.14.1-cp38-cp38-macosx_11_0_arm64.whl"; + url = "https://download.pytorch.org/whl/cpu/torchvision-0.14.1-cp38-cp38-macosx_11_0_arm64.whl"; + hash = "sha256-MPzw6f5X1KxM5kJmWaV9zhmWN8y2xwvhEoZw8XdpJiQ="; }; aarch64-darwin-39 = { - name = "torchvision-0.14.0-cp39-cp39-macosx_11_0_arm64.whl"; - url = "https://download.pytorch.org/whl/cpu/torchvision-0.14.0-cp39-cp39-macosx_11_0_arm64.whl"; - hash = "sha256-HEd9u4/20OHHhHqpS1U0cHbGZIY67Wnot5M1yxJnTBs="; + name = "torchvision-0.14.1-cp39-cp39-macosx_11_0_arm64.whl"; + url = "https://download.pytorch.org/whl/cpu/torchvision-0.14.1-cp39-cp39-macosx_11_0_arm64.whl"; + hash = "sha256-dYsg0HnoELR0C9YNHrFuSdqDDjNg+b43nrF37iIfpdQ="; }; aarch64-darwin-310 = { - name = "torchvision-0.14.0-cp310-cp310-macosx_11_0_arm64.whl"; - url = "https://download.pytorch.org/whl/cpu/torchvision-0.14.0-cp310-cp310-macosx_11_0_arm64.whl"; - hash = "sha256-HbVwFKaUboYz4fKGOq6kfVs+dCT5QTarXVCGGm2zVpg="; + name = "torchvision-0.14.1-cp310-cp310-macosx_11_0_arm64.whl"; + url = "https://download.pytorch.org/whl/cpu/torchvision-0.14.1-cp310-cp310-macosx_11_0_arm64.whl"; + hash = "sha256-jQdm6pKv+nrySOMn3YX3yc/fUaV1MLQyEtThhYVI6dc="; }; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/torchvision/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/torchvision/default.nix index 212401efe5..3d7ae3f584 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/torchvision/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/torchvision/default.nix @@ -24,13 +24,13 @@ let cudaArchStr = lib.optionalString cudaSupport lib.strings.concatStringsSep ";" torch.cudaArchList; in buildPythonPackage rec { pname = "torchvision"; - version = "0.14.0"; + version = "0.14.1"; src = fetchFromGitHub { owner = "pytorch"; repo = "vision"; rev = "refs/tags/v${version}"; - hash = "sha256-uoy9okPvFH89FJPRRFseHQisw42mWCSuPNADoGa39fc="; + hash = "sha256-lKkEJolJQaLr1TVm44CizbJQedGa1wyy0cFWg2LTJN0="; }; nativeBuildInputs = [ libpng ninja which ] diff --git a/third_party/nixpkgs/pkgs/development/python-modules/towncrier/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/towncrier/default.nix index 7b7ab11079..7be96c79a0 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/towncrier/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/towncrier/default.nix @@ -1,4 +1,7 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27 +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder , click , click-default-group , incremental @@ -13,11 +16,14 @@ buildPythonPackage rec { pname = "towncrier"; - version = "22.8.0"; + version = "22.12.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-fTg5sDOFm0X7Vd+Ct0z9cCQxkzwMyfKHpafqPgXQQss="; + hash = "sha256-nEnX519kaprqAq6QTAvBY5yP0UoBKS0rEjuNMHVkA00="; }; propagatedBuildInputs = [ @@ -29,9 +35,6 @@ buildPythonPackage rec { setuptools ]; - # zope.interface collision - doCheck = !isPy27; - preCheck = '' export PATH=$out/bin:$PATH ''; @@ -43,12 +46,15 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "towncrier" ]; + pythonImportsCheck = [ + "towncrier" + ]; meta = with lib; { description = "Utility to produce useful, summarised news files"; homepage = "https://github.com/twisted/towncrier/"; + changelog = "https://github.com/twisted/towncrier/blob/${version}/NEWS.rst"; license = licenses.mit; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/tpm2-pytss/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/tpm2-pytss/default.nix index 8f8d49d34f..0f67fe231a 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/tpm2-pytss/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/tpm2-pytss/default.nix @@ -18,17 +18,19 @@ buildPythonPackage rec { pname = "tpm2-pytss"; - version = "1.2.0"; + version = "2.0.0"; + format = "setuptools"; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-OgWWTjcj3Qd4dSaCwY+fuRQpLSFn4+9o11kPR9n8a54="; + hash = "sha256-iN5ePKMnYh1VzGbKtwdIx1tG74T+8ax/AqDGgermr90="; }; nativeBuildInputs = [ cffi - pkgconfig # this is the python module + pkgconfig # this is the Python module pkg-config # this is the actual pkg-config tool setuptools-scm ]; @@ -52,10 +54,13 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "tpm2_pytss" ]; + pythonImportsCheck = [ + "tpm2_pytss" + ]; meta = with lib; { homepage = "https://github.com/tpm2-software/tpm2-pytss"; + changelog = "https://github.com/tpm2-software/tpm2-pytss/blob/${version}/CHANGELOG.md"; description = "TPM2 TSS Python bindings for Enhanced System API (ESYS)"; license = licenses.bsd2; maintainers = with maintainers; [ baloo ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/traitsui/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/traitsui/default.nix index cf5e8bf830..58808d81ce 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/traitsui/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/traitsui/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "traitsui"; - version = "7.4.1"; + version = "7.4.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-TFs9Oq6qvR7IGgqMQPnM0o+oy51k7RORfJkNF0ZU+h0="; + hash = "sha256-IEcb8znD7ed/BrL6l76Qrj0Wbr78zBZ7y9oifHWxZj8="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/transformers/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/transformers/default.nix index e445dd7e8d..15eee616ae 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/transformers/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/transformers/default.nix @@ -24,7 +24,7 @@ buildPythonPackage rec { pname = "transformers"; - version = "4.24.0"; + version = "4.25.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -33,7 +33,7 @@ buildPythonPackage rec { owner = "huggingface"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-aGtTey+QK12URZcGNaRAlcaOphON4ViZOGdigtXU1g0="; + hash = "sha256-b0xEHM72HcaTRgGisB6fnPrMaXZ8EcJfowwK92W4aYg="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/trimesh/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/trimesh/default.nix index 56f79842c7..8384c45e66 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/trimesh/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/trimesh/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "trimesh"; - version = "3.15.8"; + version = "3.17.1"; src = fetchPypi { inherit pname version; - sha256 = "sha256-bFUDm6/4XUyyrMxc1KKqbVi1gmUJ7Lxonei/HxlmGwI="; + sha256 = "sha256-Aluy+jouh73Whz8R20Wnyhkhby+Lau0pFA/KV+MsKY4="; }; propagatedBuildInputs = [ numpy ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/troposphere/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/troposphere/default.nix index 93e09901e7..a22028fcbf 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/troposphere/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/troposphere/default.nix @@ -12,7 +12,8 @@ buildPythonPackage rec { pname = "troposphere"; - version = "4.1.0"; + version = "4.2.0"; + format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +21,7 @@ buildPythonPackage rec { owner = "cloudtools"; repo = pname; rev = version; - hash = "sha256-cAn4Hty5f/RsCnUA59CxtGrhRgzVyaHe5PuQOM6lwEQ="; + hash = "sha256-4flnV4WxK21NNd9FXizkw6FoGffSL27Tq/Jc87vYJbc="; }; propagatedBuildInputs = [ @@ -48,5 +49,6 @@ buildPythonPackage rec { maintainers = with maintainers; [ jlesquembre ]; license = licenses.bsd2; homepage = "https://github.com/cloudtools/troposphere"; + changelog = "https://github.com/cloudtools/troposphere/blob/${version}/CHANGELOG.rst"; }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/tweepy/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/tweepy/default.nix index c530218b79..325ce0e5fc 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/tweepy/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/tweepy/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "tweepy"; - version = "4.12.0"; + version = "4.12.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-Ru0DCl9MOrU4uZvLXDxM4txD0D/GR4eYBHvqeMcbTVA="; + hash = "sha256-jyH2qJoVFuNwZCOtl2CvuuMCpJXCvlxcaHJd7fT1XzA="; }; propagatedBuildInputs = [ @@ -47,6 +47,7 @@ buildPythonPackage rec { meta = with lib; { description = "Twitter library for Python"; homepage = "https://github.com/tweepy/tweepy"; + changelog = "https://github.com/tweepy/tweepy/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/twine/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/twine/default.nix index c3e4682d5a..5e51082ed6 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/twine/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/twine/default.nix @@ -16,13 +16,13 @@ buildPythonPackage rec { pname = "twine"; - version = "4.0.1"; + version = "4.0.2"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-lrHPEveuYRpKQLaujpVwIV2v8GEYKPX+HzehYlWrJKA="; + sha256 = "sha256-nhAu9f3VogZh64j61GM4gGw70yzx23KWA/42l7G8g8g="; }; nativeBuildInputs = [ setuptools-scm ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/types-python-dateutil/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/types-python-dateutil/default.nix index acf092b841..39430b9214 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/types-python-dateutil/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/types-python-dateutil/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "types-python-dateutil"; - version = "2.8.19.4"; + version = "2.8.19.5"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-NRqMqa/UrqZi+HwXJNLhrln59fmWkb47OxHSOTzTqqE="; + hash = "sha256-q5H8X3FffXbZpQ09100MaN/jilTwI5z6BQZXWuTYep0="; }; # Modules doesn't have tests diff --git a/third_party/nixpkgs/pkgs/development/python-modules/types-pytz/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/types-pytz/default.nix index 7ba9ad6d97..e1ff2f67a3 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/types-pytz/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/types-pytz/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "types-pytz"; - version = "2022.6.0.1"; + version = "2022.7.0.0"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-0HgZY3TRJ36fmYTUk3PqBDzyxk1dXEkfvIbCWFV71G8="; + sha256 = "sha256-TyDClTs6OgWH6USJ7EyeAsPTrtubpc1+eW4S9M+nAn4="; }; # Modules doesn't have tests diff --git a/third_party/nixpkgs/pkgs/development/python-modules/types-pyyaml/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/types-pyyaml/default.nix index f61550c414..7198e4e923 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/types-pyyaml/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/types-pyyaml/default.nix @@ -5,13 +5,13 @@ buildPythonPackage rec { pname = "types-pyyaml"; - version = "6.0.12.1"; + version = "6.0.12.2"; format = "setuptools"; src = fetchPypi { pname = "types-PyYAML"; inherit version; - sha256 = "sha256-cMyq/PP7QE1Xv/wVKf3YahPotPLPn8PugaZAjOCtWdI="; + sha256 = "sha256-aECBmHHJLe6+aiBn+4AMEbigY2MutOPnVZFOerNgToM="; }; # Module doesn't have tests diff --git a/third_party/nixpkgs/pkgs/development/python-modules/types-redis/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/types-redis/default.nix index 8928dda88f..e69d9dc8ec 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/types-redis/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/types-redis/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "types-redis"; - version = "4.3.21.3"; + version = "4.3.21.6"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-Lh8YQFYYjIdU3tC1Fz3AGCTSv+QZdf4xgGimi+7ftiw="; + sha256 = "sha256-95afc6D3np54lfBToG2LQp+3tdT+Emm47kBGM4j2U60="; }; # Module doesn't have tests diff --git a/third_party/nixpkgs/pkgs/development/python-modules/types-requests/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/types-requests/default.nix index 730a0a5915..2703f8bcce 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/types-requests/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/types-requests/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "types-requests"; - version = "2.28.11.5"; + version = "2.28.11.7"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-p983zG+2GHqECX2pUfjiHTNUSKolAaawo5y9HXyp7io="; + sha256 = "sha256-CuOGM3NJkNAZuA9UY9+hZOvTWBmYrIQ19Sbab+TVmMM="; }; propagatedBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/types-typed-ast/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/types-typed-ast/default.nix index f9bc60a8b9..fe16137f19 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/types-typed-ast/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/types-typed-ast/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "types-typed-ast"; - version = "1.5.8.1"; + version = "1.5.8.3"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-9kwV7ATAkRgZrEwP0AUnlRMgAfv16iPR1+T+rX3km/w="; + hash = "sha256-OmK8JRaPi0TOdOERT5+8Luh9bpbjiAy+85qtlSJVW04="; }; # Module doesn't have tests diff --git a/third_party/nixpkgs/pkgs/development/python-modules/uproot/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/uproot/default.nix index 03ac20ad60..4705999a79 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/uproot/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/uproot/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "uproot"; - version = "5.0.0"; + version = "5.0.2"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "scikit-hep"; repo = "uproot5"; rev = "refs/tags/v${version}"; - hash = "sha256-3i6AUQKKWu5KOtfLdLK2LpgkHyiqG30Eiyy6OH4fjUY="; + hash = "sha256-cklLbTO/EooQpq8vavKgloncSlyIX7DW+T9Cauyn6ng="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/urlextract/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/urlextract/default.nix index 855af054a3..2d3917e06d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/urlextract/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/urlextract/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "urlextract"; - version = "1.7.1"; + version = "1.8.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-DYg7Wd5Th4c+o4JeYrNDWDMTE1rGZMP1wNVfF7Kzv30="; + hash = "sha256-NXP2uBKBTv4GykbpHoLZhO2qPNB9qqqilqRnrZiBoDc="; }; propagatedBuildInputs = [ @@ -50,6 +50,7 @@ buildPythonPackage rec { meta = with lib; { description = "Collects and extracts URLs from given text"; homepage = "https://github.com/lipoja/URLExtract"; + changelog = "https://github.com/lipoja/URLExtract/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ ilkecan ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/uvicorn/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/uvicorn/default.nix index 26d23f08af..e48536e663 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/uvicorn/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/uvicorn/default.nix @@ -11,19 +11,22 @@ , uvloop , watchfiles , websockets +, hatchling , pythonOlder }: buildPythonPackage rec { pname = "uvicorn"; - version = "0.18.2"; - disabled = pythonOlder "3.6"; + version = "0.20.0"; + disabled = pythonOlder "3.7"; + + format = "pyproject"; src = fetchFromGitHub { owner = "encode"; repo = pname; rev = version; - hash = "sha256-nxtDqYh2OmDtoV10CEBGYQrQBf+Xtuf5k9yR6UfCgYc="; + hash = "sha256-yca6JI3/aqdZF7SxFeYr84GOeQnLBmbm1dIXjngX9Ng="; }; outputs = [ @@ -31,6 +34,8 @@ buildPythonPackage rec { "testsout" ]; + nativeBuildInputs = [ hatchling ]; + propagatedBuildInputs = [ click h11 diff --git a/third_party/nixpkgs/pkgs/development/python-modules/uvicorn/tests.nix b/third_party/nixpkgs/pkgs/development/python-modules/uvicorn/tests.nix index b9cd883f43..116a9f1d28 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/uvicorn/tests.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/uvicorn/tests.nix @@ -16,6 +16,8 @@ buildPythonPackage rec { pname = "uvicorn-tests"; inherit (uvicorn) version; + format = "other"; + src = uvicorn.testsout; dontBuild = true; @@ -44,6 +46,8 @@ buildPythonPackage rec { disabledTests = [ "test_supported_upgrade_request" "test_invalid_upgrade" + "test_no_server_headers" + "test_multiple_server_header" ]; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/versioneer/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/versioneer/default.nix index 131bf9d7f4..5976a307bf 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/versioneer/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/versioneer/default.nix @@ -1,23 +1,32 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub , pythonOlder +, setuptools +, tomli }: buildPythonPackage rec { pname = "versioneer"; - version = "0.26"; - format = "setuptools"; + version = "0.28"; + format = "pyproject"; disabled = pythonOlder "3.7"; - src = fetchPypi { - inherit pname version; - hash = "sha256-hPxymqKW0dJmRaj2LxeAGYhf9vmhBzsppKIoJwrFJXs="; + src = fetchFromGitHub { + owner = "python-versioneer"; + repo = "python-versioneer"; + rev = "refs/tags/${version}"; + hash = "sha256-Jy0c1I3kLgJAeGWzcgl5qVAWesf4EXaMIOW03B+1yWE="; }; - # Couldn't get tests to work because, for instance, they used virtualenv and - # pip. + nativeBuildInputs = [ + setuptools + ] ++ lib.optionals (pythonOlder "3.11") [ + tomli + ]; + + # Couldn't get tests to work because, for instance, they used virtualenv and pip doCheck = false; pythonImportsCheck = [ @@ -27,6 +36,7 @@ buildPythonPackage rec { meta = with lib; { description = "Version-string management for VCS-controlled trees"; homepage = "https://github.com/warner/python-versioneer"; + changelog = "https://github.com/python-versioneer/python-versioneer/blob/${version}/NEWS.md"; license = licenses.publicDomain; maintainers = with maintainers; [ jluttine ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/vertica-python/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/vertica-python/default.nix index 3b994b7e50..6a850fed99 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/vertica-python/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/vertica-python/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "vertica-python"; - version = "1.1.1"; + version = "1.2.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-3t9W12tnZztNV6E/f5br3FeznqZQuT6/DAXrbR0sDAU="; + hash = "sha256-zfeXJJL5pWzv9y39MWHYZggBRBAPGJItUKKaxp8MlRM="; }; propagatedBuildInputs = [ @@ -46,6 +46,7 @@ buildPythonPackage rec { meta = with lib; { description = "Native Python client for Vertica database"; homepage = "https://github.com/vertica/vertica-python"; + changelog = "https://github.com/vertica/vertica-python/releases/tag/${version}"; license = licenses.asl20; maintainers = with maintainers; [ arnoldfarkas ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/vispy/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/vispy/default.nix index 6c3acdf6e2..d69d9722d3 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/vispy/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/vispy/default.nix @@ -10,17 +10,21 @@ , kiwisolver , libGL , numpy +, pythonOlder , setuptools-scm , setuptools-scm-git-archive }: buildPythonPackage rec { pname = "vispy"; - version = "0.12.0"; + version = "0.12.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-CtSg/pAtOhhiuS6yE3ogzF0llceMQTF12ShXIi9GMD0="; + hash = "sha256-4AiBwdD5ssCOtuJuk2GtveijqW54eO5sHhmefFhyIk8="; }; patches = [ @@ -65,8 +69,9 @@ buildPythonPackage rec { ]; meta = with lib; { - homepage = "https://vispy.org/index.html"; description = "Interactive scientific visualization in Python"; + homepage = "https://vispy.org/index.html"; + changelog = "https://github.com/vispy/vispy/blob/v${version}/CHANGELOG.md"; license = licenses.bsd3; maintainers = with maintainers; [ goertzenator ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/volkszaehler/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/volkszaehler/default.nix index cbc51d024a..dcb153ba98 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/volkszaehler/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/volkszaehler/default.nix @@ -8,16 +8,16 @@ buildPythonPackage rec { pname = "volkszaehler"; - version = "0.3.2"; + version = "0.4.0"; format = "setuptools"; - disabled = pythonOlder "3.8"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "home-assistant-ecosystem"; repo = "python-volkszaehler"; - rev = version; - sha256 = "sha256-EiruMlhXvbUhCaDtHc3qCLbpp/KHp9rVpk2FmbR4A/k="; + rev = "refs/tags/${version}"; + hash = "sha256-jX0nwBsBYU383LG8f08FVI7Lo9gnyPSQ0fiEF8dQc/M="; }; propagatedBuildInputs = [ @@ -35,6 +35,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python module for interacting with the Volkszahler API"; homepage = "https://github.com/home-assistant-ecosystem/python-volkszaehler"; + changelog = "https://github.com/home-assistant-ecosystem/python-volkszaehler/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/w3lib/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/w3lib/default.nix index 9c98f4d092..ea878ac489 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/w3lib/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/w3lib/default.nix @@ -1,31 +1,38 @@ { lib , buildPythonPackage , fetchPypi -, six , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "w3lib"; - version = "2.0.1"; + version = "2.1.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-E98V+MF7Fj3g/V+qiSwa0UPhkN/L25hTS7l16zfGx9Y="; + hash = "sha256-DhGY8bdFGVtrPdGkzWYBH7+C8wpNnauu4fnlyG8CAnQ="; }; - propagatedBuildInputs = [ six ]; + checkInputs = [ + pytestCheckHook + ]; - checkInputs = [ pytestCheckHook ]; - pythonImportsCheck = [ "w3lib" ]; + pythonImportsCheck = [ + "w3lib" + ]; disabledTests = [ "test_add_or_replace_parameter" ]; meta = with lib; { - description = "A library of web-related functions"; + description = "Library of web-related functions"; homepage = "https://github.com/scrapy/w3lib"; + changelog = "https://github.com/scrapy/w3lib/blob/v${version}/NEWS"; license = licenses.bsd3; maintainers = with maintainers; [ ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/weasyprint/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/weasyprint/default.nix index 5ec5c59977..71ae956d6d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/weasyprint/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/weasyprint/default.nix @@ -79,6 +79,11 @@ buildPythonPackage rec { FONTCONFIG_FILE = "${fontconfig.out}/etc/fonts/fonts.conf"; + # Fontconfig error: Cannot load default config file: No such file: (null) + makeWrapperArgs = [ + "--set FONTCONFIG_FILE ${FONTCONFIG_FILE}" + ]; + postPatch = '' substituteInPlace pyproject.toml \ --replace "--isort --flake8 --cov --no-cov-on-fail" "" diff --git a/third_party/nixpkgs/pkgs/development/python-modules/webauthn/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/webauthn/default.nix index 8b551f1c66..e9de15488d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/webauthn/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/webauthn/default.nix @@ -12,13 +12,15 @@ buildPythonPackage rec { pname = "webauthn"; version = "1.6.0"; - disabled = pythonOlder "3"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "duo-labs"; repo = "py_webauthn"; rev = "refs/tags/v${version}"; - sha256 = "sha256-Ts0zKnQg1EaBNB9xQmzOpEVwDSFwHNjIhEP1jTwEOFI="; + hash = "sha256-Ts0zKnQg1EaBNB9xQmzOpEVwDSFwHNjIhEP1jTwEOFI="; }; propagatedBuildInputs = [ @@ -32,11 +34,19 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "webauthn" ]; + pythonImportsCheck = [ + "webauthn" + ]; + + disabledTests = [ + # TypeError: X509StoreContextError.__init__() missing 1 required... + "test_throws_on_bad_root_cert" + ]; meta = with lib; { - homepage = "https://github.com/duo-labs/py_webauthn"; description = "Implementation of the WebAuthn API"; + homepage = "https://github.com/duo-labs/py_webauthn"; + changelog = "https://github.com/duo-labs/py_webauthn/blob/v${version}/CHANGELOG.md"; license = licenses.bsd3; maintainers = with maintainers; [ SuperSandro2000 ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/websockets/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/websockets/default.nix index ba8ee07466..7ccafafad5 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/websockets/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/websockets/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "websockets"; - version = "10.3"; + version = "10.4"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,12 +17,9 @@ buildPythonPackage rec { owner = "aaugustin"; repo = pname; rev = version; - hash = "sha256-ZUn/DvO1Kx7Uxne4DF/am69YL1c48qpgQrGek355Z+4="; + hash = "sha256-IylvnaS8cHatA+WMc5uY9E+l+52INqOMITU1VJPO2xY="; }; - # Tests fail on Darwin with `OSError: AF_UNIX path too long` - doCheck = !stdenv.isDarwin; - patchPhase = '' # Disable all tests that need to terminate within a predetermined amount of # time. This is nondeterministic. @@ -44,7 +41,12 @@ buildPythonPackage rec { done ''; - checkInputs = [ unittestCheckHook ]; + checkInputs = [ + unittestCheckHook + ]; + + # Tests fail on Darwin with `OSError: AF_UNIX path too long` + doCheck = !stdenv.isDarwin; pythonImportsCheck = [ "websockets" @@ -53,6 +55,7 @@ buildPythonPackage rec { meta = with lib; { description = "WebSocket implementation in Python"; homepage = "https://websockets.readthedocs.io/"; + changelog = "https://github.com/aaugustin/websockets/blob/${version}/docs/project/changelog.rst"; license = licenses.bsd3; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/webthing-ws/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/webthing-ws/default.nix new file mode 100644 index 0000000000..1e7b89e03b --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/webthing-ws/default.nix @@ -0,0 +1,43 @@ +{ lib +, aiohttp +, async-timeout +, buildPythonPackage +, fetchFromGitHub +, pytestCheckHook +, pythonOlder +}: + +buildPythonPackage rec { + pname = "webthing-ws"; + version = "0.2.0"; + format = "setuptools"; + + disabled = pythonOlder "3.9"; + + src = fetchFromGitHub { + owner = "home-assistant-ecosystem"; + repo = pname; + rev = "refs/tags/${version}"; + hash = "sha256-j7nc4yJczDs28RVFDHeQ2ZIG9mIW2m25AAeErVKi4E4="; + }; + + propagatedBuildInputs = [ + aiohttp + async-timeout + ]; + + # Module has no tests + doCheck = false; + + pythonImportsCheck = [ + "webthing_ws" + ]; + + meta = with lib; { + description = "WebThing WebSocket consumer and API client"; + homepage = "https://github.com/home-assistant-ecosystem/webthing-ws"; + changelog = "https://github.com/home-assistant-ecosystem/webthing-ws/releases/tag/${version}"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/python-modules/whois/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/whois/default.nix index bb67d36974..9cfae34b5a 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/whois/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/whois/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "whois"; - version = "0.9.18"; + version = "0.9.19"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "DannyCork"; repo = "python-whois"; rev = "refs/tags/${version}"; - sha256 = "sha256-15oa7E33VQMPtI2LJ0XVKd42m9BY9jZLL3XGXpAhv/A="; + hash = "sha256-b8OZppynDT0MCwH4ic+wMJzWqyUzsigzxD0yYGfgJmI="; }; propagatedBuildInputs = [ @@ -34,6 +34,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python module/library for retrieving WHOIS information"; homepage = "https://github.com/DannyCork/python-whois/"; + changelog = "https://github.com/DannyCork/python-whois/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/wled/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/wled/default.nix index 9d42c48a60..11e5beeb60 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/wled/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/wled/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "wled"; - version = "0.14.1"; + version = "0.15.0"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "frenck"; repo = "python-wled"; rev = "refs/tags/v${version}"; - sha256 = "sha256-ytjCjxnJOMmFlGS+AuEAbIZcV2yoTgaXSLdqxPg6Hew="; + sha256 = "sha256-GmentEsCJQ9N9kXfy5pbkGXi5CvZfbepdCWab+/fLJc="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/wn/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/wn/default.nix new file mode 100644 index 0000000000..21f0ec0d08 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/python-modules/wn/default.nix @@ -0,0 +1,41 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pytestCheckHook +, flit-core +, requests +, tomli +}: + +buildPythonPackage rec { + pname = "wn"; + version = "0.9.2"; + format = "pyproject"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-TghCKPKLxRTpvojmZi8tPGmU/D2W+weZl64PArAwDCE="; + }; + + nativeBuildInputs = [ flit-core ]; + + propagatedBuildInputs = [ + requests + tomli + ]; + + checkInputs = [ pytestCheckHook ]; + + preCheck = '' + export HOME=$(mktemp -d) + ''; + + pythonImportsCheck = [ "wn" ]; + + meta = with lib; { + description = "A modern, interlingual wordnet interface for Python"; + homepage = "https://github.com/goodmami/wn"; + license = licenses.mit; + maintainers = with maintainers; [ zendo ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/python-modules/wsgi-intercept/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/wsgi-intercept/default.nix index 81ed4fdf76..164cdbf014 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/wsgi-intercept/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/wsgi-intercept/default.nix @@ -1,18 +1,39 @@ -{ lib, buildPythonPackage, fetchPypi, six, httplib2, py, pytestCheckHook, requests, urllib3 }: +{ lib +, buildPythonPackage +, fetchPypi +, six +, httplib2 +, py +, pytestCheckHook +, pythonOlder +, requests +, urllib3 +}: buildPythonPackage rec { pname = "wsgi-intercept"; - version = "1.10.0"; + version = "1.11.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { pname = "wsgi_intercept"; inherit version; - sha256 = "sha256-BX8EWtR8pXkibcliJbfBw6/5VdHs9HczjM1c1SWx3wk="; + hash = "sha256-KvrZs+EgeK7Du7ni6icKHfcF0W0RDde0W6Aj/EPZ2Hw="; }; - propagatedBuildInputs = [ six ]; + propagatedBuildInputs = [ + six + ]; - checkInputs = [ httplib2 py pytestCheckHook requests urllib3 ]; + checkInputs = [ + httplib2 + py + pytestCheckHook + requests + urllib3 + ]; disabledTests = [ "test_http_not_intercepted" @@ -20,10 +41,12 @@ buildPythonPackage rec { "test_https_no_ssl_verification_not_intercepted" ]; - pythonImportsCheck = [ "wsgi_intercept" ]; + pythonImportsCheck = [ + "wsgi_intercept" + ]; meta = with lib; { - description = "wsgi_intercept installs a WSGI application in place of a real URI for testing"; + description = "Module that acts as a WSGI application in place of a real URI for testing"; homepage = "https://github.com/cdent/wsgi-intercept"; license = licenses.mit; maintainers = with maintainers; [ SuperSandro2000 ]; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/xattr/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/xattr/default.nix index ee31542d08..fa9620d9da 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/xattr/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/xattr/default.nix @@ -3,18 +3,24 @@ , fetchPypi , python , cffi +, pythonOlder }: buildPythonPackage rec { pname = "xattr"; - version = "0.10.0"; + version = "0.10.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-ciZS0qUyTheJHEFtTHbZHM+YgwqPUWoN6FM86GfzrK8="; + hash = "sha256-wS59gf+qBgWzrIwiwplKjhipzxxZKHobdyKiKJyVLsU="; }; - propagatedBuildInputs = [ cffi ]; + propagatedBuildInputs = [ + cffi + ]; # https://github.com/xattr/xattr/issues/43 doCheck = false; @@ -23,10 +29,15 @@ buildPythonPackage rec { ${python.interpreter} -m compileall -f xattr ''; - meta = with lib; { - homepage = "https://github.com/xattr/xattr"; - description = "Python wrapper for extended filesystem attributes"; - license = licenses.mit; - }; + pythonImportsCheck = [ + "xattr" + ]; + meta = with lib; { + description = "Python wrapper for extended filesystem attributes"; + homepage = "https://github.com/xattr/xattr"; + changelog = "https://github.com/xattr/xattr/blob/v${version}/CHANGES.txt"; + license = licenses.mit; + maintainers = with maintainers; [ ]; + }; } diff --git a/third_party/nixpkgs/pkgs/development/python-modules/xdis/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/xdis/default.nix index 5039dc242f..407375cbcd 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/xdis/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/xdis/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "xdis"; - version = "6.0.4"; + version = "6.0.5"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -18,8 +18,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "rocky"; repo = "python-xdis"; - rev = version; - hash = "sha256-CRZG898xCwukq+9YVkyXMP8HcuJ9GtvDhy96kxvRFks="; + rev = "refs/tags/${version}"; + hash = "sha256-3mL0EuPHF/dithovrYvMjweYGwGhrN75N9MRfLjNC34="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/xsdata/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/xsdata/default.nix index ab88818273..2783578180 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/xsdata/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/xsdata/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "xsdata"; - version = "22.11"; + version = "22.12"; disabled = pythonOlder "3.7"; @@ -22,7 +22,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - hash = "sha256-3A2vyK6UdelWSzcN7pzPz6xKnU3X+rum7dKzl6OfWoc="; + hash = "sha256-o9Xxt7b/+MkW94Jcg26ihaTn0/OpTcu+0OY7oV3JRGY="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/yalexs-ble/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/yalexs-ble/default.nix index 8fd6aaed63..11f2a9573b 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/yalexs-ble/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/yalexs-ble/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "yalexs-ble"; - version = "1.11.4"; + version = "1.12.5"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "bdraco"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-EiT1Bnez1en8NTcNrGn9GmD//VcaBMfk4iwXaYTm8cU="; + hash = "sha256-wofdqwgMbwxUgUVwBT44qbD4m0q0CtmGH7AxRNMBMbE="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/yfinance/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/yfinance/default.nix index 1a5e718d45..7a76ebeb8f 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/yfinance/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/yfinance/default.nix @@ -1,6 +1,7 @@ { lib , appdirs , buildPythonPackage +, cryptography , fetchFromGitHub , multitasking , numpy @@ -12,7 +13,7 @@ buildPythonPackage rec { pname = "yfinance"; - version = "0.1.77"; + version = "0.1.93"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,11 +22,12 @@ buildPythonPackage rec { owner = "ranaroussi"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-gg9wX3WWacS5BmbR1wgdicFxhPN5b45KH0+obWmJ65g="; + hash = "sha256-AyuIngXReI4PX554SuGIgoQoklFieZiEZzeVBcvPvEk="; }; propagatedBuildInputs = [ appdirs + cryptography multitasking numpy pandas @@ -41,8 +43,9 @@ buildPythonPackage rec { ]; meta = with lib; { - description = "Yahoo! Finance market data downloader (+faster Pandas Datareader)"; - homepage = "https://aroussi.com/post/python-yahoo-finance"; + description = "Module to doiwnload Yahoo! Finance market data"; + homepage = "https://github.com/ranaroussi/yfinance"; + changelog = "https://github.com/ranaroussi/yfinance/blob/${version}/CHANGELOG.rst"; license = licenses.asl20; maintainers = with maintainers; [ drewrisinger ]; }; diff --git a/third_party/nixpkgs/pkgs/development/python-modules/ytmusicapi/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/ytmusicapi/default.nix index fd5baba48a..53a6b1846d 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/ytmusicapi/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/ytmusicapi/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "ytmusicapi"; - version = "0.24.0"; + version = "0.24.1"; format = "pyproject"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-vbSWgBze3tFLEpHdh3JXij3m5R6iAhTSjrCMaSLZalY="; + hash = "sha256-8NYutkZwR8tQzsVzYsOo6HdkiZ6WbIconDjcOwgs3PM="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/python-modules/zamg/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/zamg/default.nix index e24e712e7c..791dfd8779 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/zamg/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/zamg/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "zamg"; - version = "0.2.0"; + version = "0.2.2"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "killer0071234"; repo = "python-zamg"; rev = "refs/tags/v${version}"; - hash = "sha256-mql3r1TdVHwpJi54TMj6kfP3uZO2maa5dynUL4fOiNY="; + hash = "sha256-pBXt7t7Cs7F0bxvB8N67XaY/uvYhZPw10+bei/3QSfw="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/development/python-modules/zcs/default.nix b/third_party/nixpkgs/pkgs/development/python-modules/zcs/default.nix index b0a6226350..723ace81de 100644 --- a/third_party/nixpkgs/pkgs/development/python-modules/zcs/default.nix +++ b/third_party/nixpkgs/pkgs/development/python-modules/zcs/default.nix @@ -4,32 +4,43 @@ , python , yacs , boxx +, pythonOlder }: buildPythonPackage rec { pname = "zcs"; - version = "0.1.22"; + version = "0.1.25"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-+0lG2OirfXj55IFA9GMERVWtrWwULfVfdbIg8ebH+7M="; + hash = "sha256-/QIyRQtxLDVW+vcQi5bL8rJ0o3+OhqGhQEALR1YO1pg="; }; patches = [ ./fix-test-yaml.patch ]; - propagatedBuildInputs = [ yacs ]; + propagatedBuildInputs = [ + yacs + ]; - pythonImportsCheck = [ "zcs" ]; + pythonImportsCheck = [ + "zcs" + ]; + + checkInputs = [ + boxx + ]; - checkInputs = [ boxx ]; checkPhase = '' ${python.interpreter} test/test_zcs.py ''; meta = with lib; { - description = "A flexible powerful configuration system which takes advantage of both argparse and yacs"; + description = "Configuration system which takes advantage of both argparse and yacs"; homepage = "https://github.com/DIYer22/zcs"; license = licenses.mit; maintainers = with maintainers; [ lucasew ]; diff --git a/third_party/nixpkgs/pkgs/development/r-modules/bioc-annotation-packages.nix b/third_party/nixpkgs/pkgs/development/r-modules/bioc-annotation-packages.nix index 247a3fb2df..7d47727ed4 100644 --- a/third_party/nixpkgs/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/third_party/nixpkgs/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -4,14 +4,14 @@ # Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.15"; }; +let derive2 = derive { biocVersion = "3.16"; }; in with self; { AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.1"; sha256="0svxxhj3mh5gqik45ikcxnlhnma8n1c0rv8pycj2034cb9ms1dbv"; depends=[]; }; - AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.1.7"; sha256="1ckrdqlbk0vmpw1b7y4zlrx8gslhxh62q343k2a3b45r8lg78lp0"; depends=[AnnotationHubData ensembldb]; }; - AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.4.0"; sha256="15wlnzwa1zqxlzqk90fid7g2631q91n3y117wsk2h1prmgb64j7l"; depends=[AnnotationHub]; }; - AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.4.0"; sha256="1nx9qx0kqqkblgcl03p5zdjlzkwpwgzrw9zaywz2nb2318219n3d"; depends=[AnnotationHub]; }; + AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.1.8"; sha256="1bn39n8lwb6w533fl4vlszivb4b3x9adkjh04z98sbn333bicgki"; depends=[AnnotationHubData ensembldb]; }; + AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.5.0"; sha256="0dhh6a05a4m76h7gdg7yyya9aylls8ii8n14zkgyx9mhh9drhqq7"; depends=[AnnotationHub]; }; + AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.5.0"; sha256="1g3b9skkdnqbvrrz0jcclhy99abaaiwwasr7j4r4kvla5n9kbyrg"; depends=[AnnotationHub]; }; AHPathbankDbs = derive2 { name="AHPathbankDbs"; version="0.99.5"; sha256="10wcrglm521xcrfbzc39dkbjvg1pkz0zq70vgnh68akiwmdirp89"; depends=[AnnotationHub]; }; - AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.4.0"; sha256="1rmy4gdb5rgh7pr2fdxn55cnhdwsb1b7c9ph97ax82a30japvsa1"; depends=[AnnotationHub]; }; + AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.5.0"; sha256="071z6m2301njdwiq0x0dw61k7ckyimj81jacy25y9chclys8j5cq"; depends=[AnnotationHub]; }; AHWikipathwaysDbs = derive2 { name="AHWikipathwaysDbs"; version="0.99.4"; sha256="0vz3p9sx36bwzl9rq0ffh7klbq13pv2yhgjq1cjk7ll8z226c0q4"; depends=[AnnotationHub]; }; BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.1"; sha256="062ap94m6s4w8clg1zlj223wmgbmq19yhksx9fcdcqrxr5kbfv85"; depends=[BSgenome]; }; BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; }; @@ -125,7 +125,7 @@ in with self; { BSgenome_Vvinifera_URGI_IGGP12Xv0 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv0"; version="0.1"; sha256="1m8mqkiqs7291hccb8pfyf2yxpky45qr6j3d9wkvp9x3ra3h0yxf"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP12Xv2 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv2"; version="0.1"; sha256="1saavsi75gw33jphhm3qb5psyfrv850ss4cmqr4i7aw1kc0fvs1j"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; }; - CTCF = derive2 { name="CTCF"; version="0.99.5"; sha256="0rrks0zmknfj04gzvbj6206n4v78cjwxrwr4216xwsp6bsbqaj65"; depends=[]; }; + CTCF = derive2 { name="CTCF"; version="0.99.10"; sha256="0s6rscf6c4sjf6azf3blzb3lfgk7sk3clrlvmhq2gv82g9ic6d40"; depends=[]; }; ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR RSQLite]; }; DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; }; ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[data_table jsonlite RCurl]; }; @@ -147,10 +147,11 @@ in with self; { FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; }; FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; }; GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; }; - GO_db = derive2 { name="GO.db"; version="3.15.0"; sha256="169d2fycsw1k6m2cx08i877nbcv1mwm1ll2apjjny83zqmrivjds"; depends=[AnnotationDbi]; }; - GeneSummary = derive2 { name="GeneSummary"; version="0.99.3"; sha256="0za1cy8kz8all8g5wk3475lvzwp25wq7b7p0568didfif88w5pj2"; depends=[]; }; - GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.8"; sha256="1d4yfah3fllmqbv76ygxfga4rbj03g558wbwnk61w70118rm0rsp"; depends=[]; }; + GO_db = derive2 { name="GO.db"; version="3.16.0"; sha256="13iv94wl2adqrwvcmicrxiz3jmji6v4znvhkkgmsx053icnq2lj6"; depends=[AnnotationDbi]; }; + GeneSummary = derive2 { name="GeneSummary"; version="0.99.4"; sha256="0fliy0z1byh7zlf7k3lklarrd2l2rl3sgliqsxnn4sviskv2rlxz"; depends=[]; }; + GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.9"; sha256="1yj5vhd05d2alh9cgvq5jz9sl754g8zfhpf9kyiyvvyfisd72fp6"; depends=[]; }; GenomicState = derive2 { name="GenomicState"; version="0.99.15"; sha256="1r7z3n6wyrd2cclj5b7sg15wpmjdh9k5b1hjlw7jjx8j384l7l1h"; depends=[AnnotationDbi AnnotationHub bumphunter derfinder GenomeInfoDb GenomicFeatures IRanges org_Hs_eg_db rtracklayer]; }; + HDO_db = derive2 { name="HDO.db"; version="0.99.1"; sha256="14ngyxailmxrbxqqi9m7mchqcvchmbg7zm34i8a927b20s6z4z61"; depends=[AnnotationDbi]; }; Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; }; Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; }; HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.3"; sha256="0x6nxvzmc8k4qp382ca32y58awkxpg0b3kc7m1mz9iag6sq7c5vx"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -199,9 +200,9 @@ in with self; { Mus_musculus = derive2 { name="Mus.musculus"; version="1.3.1"; sha256="143zdf83gbfqhy8jm9df7gzhw5q3a64jrjrxrzjf0zd76j8s8j6y"; depends=[AnnotationDbi GenomicFeatures GO_db org_Mm_eg_db OrganismDbi TxDb_Mmusculus_UCSC_mm10_knownGene]; }; Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; - Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.15.0"; sha256="15lshbv5rlhh0cm9a235s0hxiy6svqp0pwk1gs4h6wlsr49560kv"; depends=[AnnotationDbi]; }; + Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.16.0"; sha256="0m696d1pwnaiymv4c9wmhl05jgwa64n98xvv4czyg1wjxxdly9z7"; depends=[AnnotationDbi]; }; PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; }; - PFAM_db = derive2 { name="PFAM.db"; version="3.15.0"; sha256="03vjfb9vx1gxrw1jkq6y4i46qhjj9z2mkdiflglbd6kpfrgnl0z7"; depends=[AnnotationDbi]; }; + PFAM_db = derive2 { name="PFAM.db"; version="3.16.0"; sha256="035k1vappczks14jms7azl9bvgg1z67svbng8b7v4qmr9slsm0l0"; depends=[AnnotationDbi]; }; POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; @@ -214,16 +215,12 @@ in with self; { SHDZ_db = derive2 { name="SHDZ.db"; version="3.2.3"; sha256="077xy2zx3f4c01di18ki32xmrwgsc1qjci3wj33nmgsy5925zdxs"; depends=[AnnotationDbi org_Hs_eg_db]; }; SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; - SNPlocs_Hsapiens_dbSNP_20101109 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20101109"; version="0.99.9"; sha256="1qxsaq2wai1rqbidz005frjw8r8m2ia9cd87ziw8i66a798rzima"; depends=[GenomicRanges IRanges S4Vectors]; }; - SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.13"; sha256="123n3rwkq8c8gqwhbwpsvis2x1xp137hchg9y7sv7l1givb6n2kf"; depends=[BSgenome GenomicRanges IRanges]; }; - SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.12"; sha256="1hfqbf03jd2r7ybb19rl3czrjb4h4vjqlrrilfqc8yymy7myvqqb"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SNPlocs_Hsapiens_dbSNP142_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP142.GRCh37"; version="0.99.6"; sha256="17ql8fsali09dx1vv9178ya7zx901vwq4bnjrs35fjrjdvx6yvfd"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges]; }; SNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.20"; sha256="1z8kx43ki1jvj7ms7pcybakcdimfwr6zpjvspkjmma97bdz093iz"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.20"; sha256="0yxmsnxncr7w30r0d7bg5i96pclm2vf40p9jdqa02rc67a6sximn"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP149_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP149.GRCh38"; version="0.99.20"; sha256="17bv25p1261hn9d7mxfp6pvivj15pxyvr92gms8a8msfqg9y0xkb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP150_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP150.GRCh38"; version="0.99.20"; sha256="0jkwwgxxpm9ry8kizq8hs70sky41pks1ag40y5aqq91yjbpqlckj"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SNPlocs_Hsapiens_dbSNP151_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP151.GRCh38"; version="0.99.21"; sha256="19j5h0dgxd2iw35p6fblj8b3z2d92zmmp60khw5zs70scd5fs9pb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SNPlocs_Hsapiens_dbSNP155_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh38"; version="0.99.21"; sha256="0id595ily1kwzsc3sh3mhbjyki19vc7n4vzdwq9pdpasraykc718"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SNPlocs_Hsapiens_dbSNP155_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh37"; version="0.99.22"; sha256="0icb85y6jc6a2rphf8dsxhfcsh7j6kmm6iii7f0dl33dsgsmb1wl"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SNPlocs_Hsapiens_dbSNP155_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh38"; version="0.99.22"; sha256="1zdx6bjl494wlzqhhz6q6cnygbrvqimcrmmxab5dfwckkyfxlyd8"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -247,7 +244,7 @@ in with self; { TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.15.0"; sha256="1y9fqhkk5wgny43bxc0j82afy49vz34rblcmcfmwavngdkpnj879"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.16.0"; sha256="1kphpnfibyfh5qqki8ivngynsr81jfqw04ysya6xq2llldh8i137"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg38_refGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.refGene"; version="3.15.0"; sha256="03ca3spvhci16fndy82fx0cik0a6yqj77l6nfvv5k9qg3xnrp179"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac10_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac10.refGene"; version="3.14.0"; sha256="12gxs6s57l22013g40b7hb09vxhmdri73cp9rgs2icb88p7sjlib"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.12.0"; sha256="1a0wbh4dajpgynmw2iwbvp836nklzlk0cfhqnwmqq9l4gzzh2w07"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -270,7 +267,7 @@ in with self; { TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.12.0"; sha256="1i3w8avi5ihkynapya1wy70i6f0nq4jyy5nvlwikppqpdjwn7gb4"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.12.0"; sha256="01bl7zdxyhhg4706jhi7271fs09riixkyr3x0bancl1fpzwszc6p"; depends=[AnnotationDbi GenomicFeatures]; }; UCSCRepeatMasker = derive2 { name="UCSCRepeatMasker"; version="3.15.2"; sha256="0hi1h8vvbf27wk13gbfgm0amjqgl7b2qxlgakcbr87qxwbi02zv7"; depends=[AnnotationHub GenomeInfoDb RCurl XML]; }; - XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.13"; sha256="1fidmrf0xr7wwd4v1y7x2wwyplplbs1z8jqpfdjpc8aclcy38m3f"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + UniProtKeywords = derive2 { name="UniProtKeywords"; version="0.99.4"; sha256="0rs3y7kw77nwbvil4kvmjjlvjdsdyd8rdc0qb1ghm3bvisycgnyh"; depends=[]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.12"; sha256="0k823fvqjmdkmd47m7wyra6jxmv8lnk2i1xl4pp0mh3zgb87hgfb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.12"; sha256="0d4q32ij2x4726wvw06sgmivid0n94vfdmszdyh607xlcahqxa5z"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; adme16cod_db = derive2 { name="adme16cod.db"; version="3.4.0"; sha256="1vn9s1lrl6zzs00madb111fdzqjfb45mprpjqap8bvib65942rvq"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -279,22 +276,22 @@ in with self; { agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; }; alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.1.0"; sha256="0q90nw3ds66zbyn3ch19lq1qimd1hz1s3jyyd6zi3v10p5s8bm0y"; depends=[AnnotationHub]; }; alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.1.0"; sha256="18qabggvs9mcg8fwd6prdca8lfxn9r9i0493l667n8jl9vy2pbfc"; depends=[AnnotationHub]; }; - anopheles_db0 = derive2 { name="anopheles.db0"; version="3.15.0"; sha256="01hs1qxzpp9974yhplkhd4hq0mxx63plgb9p5azqz5z05x88ksfn"; depends=[AnnotationDbi]; }; - arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.15.1"; sha256="1sazbvgc7rjfcn9y0qkvq0s21vb8i5iy14w9wi274s2h75ishg2i"; depends=[AnnotationDbi]; }; + anopheles_db0 = derive2 { name="anopheles.db0"; version="3.16.0"; sha256="0mmhbm5hzz739jv0028wna03zk6lphiwac5qhg55w8y19kclkvc2"; depends=[AnnotationDbi]; }; + arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.16.0"; sha256="1gir9xvfx7zccj3y3k6g9bli330pmlwc6gn8ajf513a2w4gl0z4q"; depends=[AnnotationDbi]; }; ath1121501_db = derive2 { name="ath1121501.db"; version="3.13.0"; sha256="0v4vapbns71dpv09857lyrnliq202i8yi4ar9z81wbpbc22lhf0d"; depends=[AnnotationDbi org_At_tair_db]; }; ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; }; ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; }; barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; }; barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; }; bovine_db = derive2 { name="bovine.db"; version="3.13.0"; sha256="06692b1n0lzhg0biixipsnwx33w9y8wkc7pc5q1lkjfzbmd2inml"; depends=[AnnotationDbi org_Bt_eg_db]; }; - bovine_db0 = derive2 { name="bovine.db0"; version="3.15.0"; sha256="1vvlsdbnbdg1pifzzrzsgz9lp251p3bq80mgc5jmmkw2mf1pk3n0"; depends=[AnnotationDbi]; }; + bovine_db0 = derive2 { name="bovine.db0"; version="3.16.0"; sha256="02abx3ygnh1pnks8rbf2k86a1kzkbv7vfykkln22anvf2a41qd0d"; depends=[AnnotationDbi]; }; bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; }; bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; }; bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; }; bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; }; cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; }; canine_db = derive2 { name="canine.db"; version="3.13.0"; sha256="1x1mlh0p6r2l5kclarqwgiw9y64xc8jhp6252hhpl9bpnn638n3s"; depends=[AnnotationDbi org_Cf_eg_db]; }; - canine_db0 = derive2 { name="canine.db0"; version="3.15.0"; sha256="0ycxp1z0idjdhzi5zr5s3cj6h421mfgjdvrcx64h4sfg6qga8yv2"; depends=[AnnotationDbi]; }; + canine_db0 = derive2 { name="canine.db0"; version="3.16.0"; sha256="0cn1czv87dmmc706n7l8995pv1xa57f8agx5xdfdba3d50snwh7p"; depends=[AnnotationDbi]; }; canine2_db = derive2 { name="canine2.db"; version="3.13.0"; sha256="1xzz0vivdypwl6kaq2ba02jkpxw0r9r98297ilksdh8m71f244si"; depends=[AnnotationDbi org_Cf_eg_db]; }; canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; }; canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; }; @@ -304,10 +301,10 @@ in with self; { celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; }; celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; }; chicken_db = derive2 { name="chicken.db"; version="3.13.0"; sha256="0szb7sgassw10kzm8iz8h3fdbxm6v0kz95yb3a9icj2chi5d1m2i"; depends=[AnnotationDbi org_Gg_eg_db]; }; - chicken_db0 = derive2 { name="chicken.db0"; version="3.15.0"; sha256="09jpzqj46w0m4gz9i3wghvhd0agksimmyp6c53d9sszi45sxhqyc"; depends=[AnnotationDbi]; }; + chicken_db0 = derive2 { name="chicken.db0"; version="3.16.0"; sha256="1r3svjlr536q3zicq7k0wvw6szpdj81h3bjb3f4a0f3rlxzrakif"; depends=[AnnotationDbi]; }; chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; }; chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; }; - chimp_db0 = derive2 { name="chimp.db0"; version="3.15.0"; sha256="0k2wip710k6z4s20f86ff3lbhjh5jg9waaqcznhhrn4nca9gymzr"; depends=[AnnotationDbi]; }; + chimp_db0 = derive2 { name="chimp.db0"; version="3.16.0"; sha256="04lzica0hgq7xrdspzidfnjgjg9cxhy2wjcz4vndlx519jlwdrny"; depends=[AnnotationDbi]; }; chromhmmData = derive2 { name="chromhmmData"; version="0.99.2"; sha256="13g6x7lzmkz9qv7yr6ps8gsgilgr048lc7y0y7xsfa9ws3n08fzj"; depends=[]; }; citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; }; citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; }; @@ -331,15 +328,15 @@ in with self; { ecoli2_db = derive2 { name="ecoli2.db"; version="3.13.0"; sha256="1i2arr26hch7lmx2bixzy4l0zaa0gynah4dfwa98cvb24ahqqj9f"; depends=[AnnotationDbi org_EcK12_eg_db]; }; ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; }; ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; }; - ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.15.0"; sha256="00r9w2wklmvswrvvvmx0bwgwlb5q2fj7wr0nz2p5rnv4nczj8f8w"; depends=[AnnotationDbi]; }; - ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.15.0"; sha256="0xall7j0y7gq4iv02q4q3b4mj7111zxjb1gycib1z3fy6nfx5bl1"; depends=[AnnotationDbi]; }; + ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.16.0"; sha256="17khj10g2nsim40w9c6wc79hx5xx4g2n0hnvigsxm3l0a38vsz12"; depends=[AnnotationDbi]; }; + ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.16.0"; sha256="09n18nv2v4c7j472ygzpv808p473gfnifh9vnzm79ifjiixvzx4w"; depends=[AnnotationDbi]; }; ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; }; ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; }; ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; }; ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; }; - excluderanges = derive2 { name="excluderanges"; version="0.99.6"; sha256="1ryp2ghbx1b1268fpgza5rn6brhalff9hsr6fxpr5x5mc35hkd68"; depends=[]; }; + excluderanges = derive2 { name="excluderanges"; version="0.99.8"; sha256="19pdwlhqlz420yss371bsqhkx8c7wxr0sv4wsycnc0mlplwq4bsf"; depends=[GenomicRanges]; }; fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - fly_db0 = derive2 { name="fly.db0"; version="3.15.0"; sha256="0x4hsqlzsjjdhjfqa57xwsvn5cnn7radhqb21vjq7vcpvp2hfjmp"; depends=[AnnotationDbi]; }; + fly_db0 = derive2 { name="fly.db0"; version="3.16.0"; sha256="1mjd1g0pazhzgwiwll71fhqcisilc5wqz7dnl8ypxd7v7915w8jr"; depends=[AnnotationDbi]; }; geneplast_data = derive2 { name="geneplast.data"; version="0.99.6"; sha256="1vq2l828d25lsmmac6079vip8bbvqhiyr1x58s467cwcl1mgayrk"; depends=[]; }; geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; }; genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; @@ -472,7 +469,7 @@ in with self; { hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.8.0"; sha256="00fjhz7gac0rssn3kplag68vfx7gimjrm4mc7z516bs013rppgsz"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.8.0"; sha256="0s4zl9lv5w3fkb9axhz9siliz73brwarw8a7cam1p9b2kmdrdqs0"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.8.0"; sha256="1g7yfva96vhkdvcvsjwsj7sy8q6kczd5rmcwrwjc73v9qi4ywgal"; depends=[AnnotationDbi org_Hs_eg_db]; }; - human_db0 = derive2 { name="human.db0"; version="3.15.0"; sha256="15y7ggkapizkj9fx0w0d388vqd4v2j24crygx7c783g01hi0lrn1"; depends=[AnnotationDbi]; }; + human_db0 = derive2 { name="human.db0"; version="3.16.0"; sha256="1gjikb5rp6qh5cv90hylhjkna4kp084mxawqv0x1z5kl8lx8dfgk"; depends=[AnnotationDbi]; }; human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; }; human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; }; human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; }; @@ -510,7 +507,7 @@ in with self; { m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; }; maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; }; maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; }; - malaria_db0 = derive2 { name="malaria.db0"; version="3.15.0"; sha256="07fd1pfkzkjrf6zk061hngf2hba9yikczc5kdwks22sh8sz407yd"; depends=[AnnotationDbi]; }; + malaria_db0 = derive2 { name="malaria.db0"; version="3.16.0"; sha256="0mgwrhlcac6vxvb9b8m9xx1v2yav04sdgw649vkaq7a8kbzwywas"; depends=[AnnotationDbi]; }; medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; }; medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; }; metaboliteIDmapping = derive2 { name="metaboliteIDmapping"; version="1.0.0"; sha256="0nflpvla3wn8i2gaja5wwjkxk0jich95f5ws3rnhh2a6rx3xi3ql"; depends=[AnnotationHub]; }; @@ -565,7 +562,7 @@ in with self; { mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bpzpba9aifc7w6qbrh6rnc636k6z1r9gz03sxvc3aa3977p9xag"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.8.0"; sha256="172bhzqqw5hz76bw8vqwx2qpw4f6rwbcm6savmkxmmhzb2nq60z5"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.8.0"; sha256="02g2n5nkxi9lqw9h7sbkblk99zd57lkrldqb1fmi9zww59qwagrv"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mouse_db0 = derive2 { name="mouse.db0"; version="3.15.0"; sha256="1b85xci8xcmck41yqm1sd63cvxmkrnm5cpfdnr9dmw77vl1p85wb"; depends=[AnnotationDbi]; }; + mouse_db0 = derive2 { name="mouse.db0"; version="3.16.0"; sha256="0nr2s573najg1n8jl73040cglqmgb169rv9mhk8zmcc4zqgfaa0k"; depends=[AnnotationDbi]; }; mouse4302_db = derive2 { name="mouse4302.db"; version="3.13.0"; sha256="0rf22kfj6y96ap0gcwq3mnpv6fj0yax37gf51sfi0wkmp95k7rcs"; depends=[AnnotationDbi org_Mm_eg_db]; }; mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; }; mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; }; @@ -602,26 +599,26 @@ in with self; { nugomm1a520177cdf = derive2 { name="nugomm1a520177cdf"; version="3.4.0"; sha256="0skd5b76si0vydzk5qhg4f1a1j655alxflm9sqci8fi8safwj96a"; depends=[AnnotationDbi]; }; nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; }; oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; }; - ontoProcData = derive2 { name="ontoProcData"; version="0.99.9"; sha256="1axqhximb238h7ib7sd7g1n1in8969d263pjd362i0s1m4y5y033"; depends=[]; }; - org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.15.0"; sha256="1qnqp1m7asa16llxlrjmj6ng93v7ngcg03l51k33cnwjhzalgl88"; depends=[AnnotationDbi]; }; - org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.15.1"; sha256="1n954fc14rfdsaldw93dnw11jrs0ar0bk5icc86mdiy0c18bvx4z"; depends=[AnnotationDbi]; }; - org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.15.0"; sha256="0nmrhbnpkjgmb5adh38lffrv1h84grfy6lbgd98y6b1iq58facnl"; depends=[AnnotationDbi]; }; - org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.15.0"; sha256="0hc3gd782yynn12wkawwri07src6ay3zwpj0yjbxcgkkrdga8jdj"; depends=[AnnotationDbi]; }; - org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.15.0"; sha256="1dmvszbri4kipjydjaz78igi16xqjlzxvns4f2d1rfdlfvwpgvyf"; depends=[AnnotationDbi]; }; - org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.15.0"; sha256="1d9igsxxl7nws3ah6k4vz9hfzpdb0vb8hg6h911yr4z0hpc00hbk"; depends=[AnnotationDbi]; }; - org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.15.0"; sha256="0nmgwqq8s4vswa9cc5r3qglgbc13wggs2isnj9n1rnb738i3n54n"; depends=[AnnotationDbi]; }; - org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.15.0"; sha256="0x0j7fc8pyz23jn6ag3cvz55zrk3gmvnkqhfwvsvdz7v72cgwhxy"; depends=[AnnotationDbi]; }; - org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.15.0"; sha256="10ma0823mr2aj9xrr0ygg8sjdndksslkjpzlxb259lwy421hskcn"; depends=[AnnotationDbi]; }; - org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.15.0"; sha256="1gi8dj5hn8798fgwhqskn131p108n78lvk2wnl69sb6cwyw4dg5g"; depends=[AnnotationDbi]; }; - org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.15.0"; sha256="0prwma5jfxszwc4avna51x4cmnqchz2s317cp4ia5w7035hbpj8x"; depends=[AnnotationDbi]; }; - org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.15.0"; sha256="12npjcq5n04ja82yxpp35lmjgxrzd3rp5xxmrggzw0zb1w4dyn66"; depends=[AnnotationDbi]; }; - org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.15.0"; sha256="1ly8bfjq4n3agb7f27cizf87qy0y4001nimnw9a3nar1hi43df7n"; depends=[AnnotationDbi]; }; + ontoProcData = derive2 { name="ontoProcData"; version="0.99.9901"; sha256="16wwh539hdm89f1vxqfgjmlbqwadnr4xqap80annsqgfn90mi8rk"; depends=[]; }; + org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.16.0"; sha256="07p8v4ls2s2svd0r276nn4w125iimcq78395r9pmx9x0vw2a6xvj"; depends=[AnnotationDbi]; }; + org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.16.0"; sha256="15xgqgnd4qmnhx9fd95g40zr07iiw97jkjhmp1whdc5cvd2bhjwm"; depends=[AnnotationDbi]; }; + org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.16.0"; sha256="12smyjq1bl1s4j06r3klqbm491in4ndjqnk7j6vydyjrz9jwkdcs"; depends=[AnnotationDbi]; }; + org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.16.0"; sha256="0sa4g769wddw4gk3p8103x48hggn6hab28pnsm7idginz5gygc70"; depends=[AnnotationDbi]; }; + org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.16.0"; sha256="0w75s2zqvq1rxgvbcnif01fmyj5ajvx9m7jfdb86al8jm3pcd61x"; depends=[AnnotationDbi]; }; + org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.16.0"; sha256="1ss1sd9g0lzqa7il4wkchlwqxyrc0wirkdxzd18fmqij7wvwa0pb"; depends=[AnnotationDbi]; }; + org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.16.0"; sha256="1vxnf0b5v0lc963vqrzhccya895fhbzzarfwm54gwd7zj9r7chy0"; depends=[AnnotationDbi]; }; + org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.16.0"; sha256="1n9l2y213187fnbxsyyq51rkl9ck895gymbnacg5krj668h08g6j"; depends=[AnnotationDbi]; }; + org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.16.0"; sha256="0rmis6gx2gwkjli9xp3vwrppp22kdlpxpywx38r0cfkxsaaaq9pi"; depends=[AnnotationDbi]; }; + org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.16.0"; sha256="1rdyxwfxiamr1x4zxngjc57a5zpdycjnq5b9xxx9wih8md8ij5aq"; depends=[AnnotationDbi]; }; + org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.16.0"; sha256="02ic79qb6b3vp50g44736gkmlx1hsjhfadj7dp463fqdzbg6ybid"; depends=[AnnotationDbi]; }; + org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.16.0"; sha256="030wpxzp4lf3fs6wxp1vwrlclxjsq8i507wwvnbhkl9lcys5f0x0"; depends=[AnnotationDbi]; }; + org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.16.0"; sha256="0sm147m9xp4xdzga2kk8d5zdfgb3qzxz57hhb093ph1a4hyczl64"; depends=[AnnotationDbi]; }; org_Mxanthus_db = derive2 { name="org.Mxanthus.db"; version="1.0.27"; sha256="1jqwsdjz1d8fwqhq26lavb2kq739ddlb8khsh4b096vhnwv3dxg5"; depends=[AnnotationDbi AnnotationHub BiocFileCache BiocStyle]; }; - org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.15.0"; sha256="1dca0qxji9nfrmr8p01w9fm2fqghkmjhwfjky8y6k49k28mr3pi6"; depends=[AnnotationDbi]; }; - org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.15.0"; sha256="0yx4vqax25p0cy6li2pxbmgsslxk2nbqx381vsikpiyqlzkb77p0"; depends=[AnnotationDbi]; }; - org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.15.0"; sha256="0rhrb52qafvxjxg3b65w67x9lhcmxc1pz4svp1q549f6s75mhvmp"; depends=[AnnotationDbi]; }; - org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.15.0"; sha256="0fv7y4ldyg2l1zr2csbaf8f34xz2wlr8rj86bgyn1ygra503irwm"; depends=[AnnotationDbi]; }; - org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.15.0"; sha256="0kzr4mnb2mld46d81ckygqg8s9r0nxcdckixn748yw0hwvf33krg"; depends=[AnnotationDbi]; }; + org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.16.0"; sha256="1jwma50lw8c0axr2hs1ij5wn26sl129gk7rcrrk2h1lh21zx48n0"; depends=[AnnotationDbi]; }; + org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.16.0"; sha256="1wvnd2f9nv0bgqan63b0v40mv1y8j1jcf30hxlfx72r0isdpf4fh"; depends=[AnnotationDbi]; }; + org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.16.0"; sha256="03b8m4p865kzhjj8zyhmc0ic0n4jyjdl4h8a8xny10b7xs6l0v9f"; depends=[AnnotationDbi]; }; + org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.16.0"; sha256="1v793yxdszxg7hsj0f60qjxlflmpqjywcwmxrvizjzb9d76y6zrk"; depends=[AnnotationDbi]; }; + org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.16.0"; sha256="0j2xv59d65gin2v6d2gfsly6wyj9bmjpnld75qzlc7sqapa51li6"; depends=[AnnotationDbi]; }; paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; @@ -798,8 +795,10 @@ in with self; { phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.7.2"; sha256="1jmc4k4zgkx5vr2plnidnd9bidlwlb0kr7mjg60cqjw7dq7jl1fa"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.7.1"; sha256="0dka39rvx4d3wbcjypcgvc19s6cnxkkfywa4irv23kpibq1sjyv0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; phastCons30way_UCSC_hg38 = derive2 { name="phastCons30way.UCSC.hg38"; version="3.13.0"; sha256="0jq5z1af0f5jqazz46gvf3nnkrp91a6qzb96bk7fjdbvk5b3z0dd"; depends=[AnnotationHub GenomicScores]; }; + phastCons35way_UCSC_mm39 = derive2 { name="phastCons35way.UCSC.mm39"; version="3.16.0"; sha256="0lniqakqxja8inq3gn168w1xja1m2kbmww0cw971smsnddypmig7"; depends=[AnnotationHub GenomicScores]; }; phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - pig_db0 = derive2 { name="pig.db0"; version="3.15.0"; sha256="0rbfkbi7hmjmsb0w6qzvz70cg6g1j0zyl2bm3jckb2x80nzd0cyl"; depends=[AnnotationDbi]; }; + phyloP35way_UCSC_mm39 = derive2 { name="phyloP35way.UCSC.mm39"; version="3.16.0"; sha256="1n0iywfs23dhc54mapirvaqcbx38zjf8lknbsz80p5lxp24n2lf9"; depends=[AnnotationHub GenomicScores]; }; + pig_db0 = derive2 { name="pig.db0"; version="3.16.0"; sha256="0aj1xafsx1dg4w6mmfaaj87izgjfs8akj4dm5x7qzcmvxcd6sx7c"; depends=[AnnotationDbi]; }; plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; }; plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; }; poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; }; @@ -829,7 +828,7 @@ in with self; { ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bi4wy0sbhsyavxwshxvf3iqmyz26q7y2vqp1h3rjshsjdmhfd0h"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.8.0"; sha256="1m0hd0nlav9dhqzvs5drl8q3llx2wjxdfvb24fmjnba4h769ns7k"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.8.0"; sha256="14hp03pizq7kprwk26s9w6s27zzbs2kk50qhjbiwic1xbrl0dp8a"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rat_db0 = derive2 { name="rat.db0"; version="3.15.0"; sha256="1cj6s5x7zkw642qgbbngnpym5f71p3cvi79vx0y6pd565s6hfkj1"; depends=[AnnotationDbi]; }; + rat_db0 = derive2 { name="rat.db0"; version="3.16.0"; sha256="18c7im1l50z7gzj5i9aj3h9pqvnrrazqimigp49nh6ssxlpy51rc"; depends=[AnnotationDbi]; }; rat2302_db = derive2 { name="rat2302.db"; version="3.13.0"; sha256="1k2qm1rpq3xkj52m3n629r4qcqi2azdssb2i5shj9jdaqkmr43qc"; depends=[AnnotationDbi org_Rn_eg_db]; }; rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; }; rat2302frmavecs = derive2 { name="rat2302frmavecs"; version="0.99.11"; sha256="0qy5hf86lrkn20yg6d46kcw9fjc0qhsbzbyavaj1v2zl34xvr1ii"; depends=[affy frma]; }; @@ -837,7 +836,7 @@ in with self; { ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; }; rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; }; rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; }; - reactome_db = derive2 { name="reactome.db"; version="1.81.0"; sha256="0rfrk0akjngha6zs6dnh4wa9jl0l9dknrmwhbag9gbc9h5pl7i4g"; depends=[AnnotationDbi]; }; + reactome_db = derive2 { name="reactome.db"; version="1.82.0"; sha256="0l6k7jy0gz8wsv69apw4nk6lbr0ppbfpyjppk81hqn22pzi17w42"; depends=[AnnotationDbi]; }; rgu34a_db = derive2 { name="rgu34a.db"; version="3.13.0"; sha256="1nl28gia0zh8xkfv8llxiysxk1k1gm6cs2wvl0n1xqhnr0rhla76"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; }; rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; }; @@ -851,7 +850,7 @@ in with self; { rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rhesus_db0 = derive2 { name="rhesus.db0"; version="3.15.0"; sha256="0iqn7cad6rhlkbyhw8ldc85z9fzs28hybb80pc6j7p0a6k3va6ny"; depends=[AnnotationDbi]; }; + rhesus_db0 = derive2 { name="rhesus.db0"; version="3.16.0"; sha256="0zz6aarirvd31x6cnya097ckjvww3g5wx135wg4041f33cqisq55"; depends=[AnnotationDbi]; }; rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; }; rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; }; ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -873,8 +872,8 @@ in with self; { soybeanprobe = derive2 { name="soybeanprobe"; version="2.18.0"; sha256="06dpwqad7q3wyq0bsgpwkw8kx1gq5fy1s1lw632xrvgcid2fsmf8"; depends=[AnnotationDbi]; }; sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; }; sugarcaneprobe = derive2 { name="sugarcaneprobe"; version="2.18.0"; sha256="17zrydd8xd7m61bp750xlpcak0m3zgl0mvknz9s7mv2a35kp02ih"; depends=[AnnotationDbi]; }; - synaptome_data = derive2 { name="synaptome.data"; version="0.99.3"; sha256="08j7arr8lhm17ikhxxg6f8vx45ixchvh33f2wla2486dvd160pw4"; depends=[AnnotationHub]; }; - synaptome_db = derive2 { name="synaptome.db"; version="0.99.8"; sha256="0g7pah9q1ci0ykm1lf3gdssfxmc33qkc5y428wdb8fzirqh5csx4"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; }; + synaptome_data = derive2 { name="synaptome.data"; version="0.99.6"; sha256="00cqgx06wysz0qyicwnxlc8hpqkj5rwqlyfzsvy7agvcjjkarwg5"; depends=[AnnotationHub]; }; + synaptome_db = derive2 { name="synaptome.db"; version="0.99.12"; sha256="1f63s54kn78bxrhp1aidghaicymd39p3bgpnxkz9lkby50xcfwyl"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; }; targetscan_Hs_eg_db = derive2 { name="targetscan.Hs.eg.db"; version="0.6.1"; sha256="1p14jyhn1d2m6kww9vsb96263g8crnrff7qgyiz46pp9ww8mvxf4"; depends=[AnnotationDbi]; }; targetscan_Mm_eg_db = derive2 { name="targetscan.Mm.eg.db"; version="0.6.1"; sha256="0ad6vxpwn9x82qcrpwcy1lwg0q3ik4vabxn01k6gwmbpvydz9cf5"; depends=[AnnotationDbi]; }; test1cdf = derive2 { name="test1cdf"; version="2.18.0"; sha256="0nmkrp4b2p09pg8ndcnfv5y7w94xah6fa5pff60dp1s2s8dcgcr4"; depends=[AnnotationDbi]; }; @@ -891,8 +890,8 @@ in with self; { vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; }; wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; }; wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; }; - worm_db0 = derive2 { name="worm.db0"; version="3.15.0"; sha256="0xv5b7mblx25rqm2g018jdch05c0djq83sa764ck4ps8nzk4yzws"; depends=[AnnotationDbi]; }; - xenopus_db0 = derive2 { name="xenopus.db0"; version="3.15.0"; sha256="1crz6wyz7aczpy7xfl4yh1l34lv0ldvqb64qd0mnclsvx1222mm1"; depends=[AnnotationDbi]; }; + worm_db0 = derive2 { name="worm.db0"; version="3.16.0"; sha256="06wn3nw6614awmf7z7r2kq02347bbmpq8ydzbpsrfniq14jly6m4"; depends=[AnnotationDbi]; }; + xenopus_db0 = derive2 { name="xenopus.db0"; version="3.16.0"; sha256="146zg2x69m3hzyqbjzadilaqskzfxvjblw0c4pjgv6akf3vi3xn3"; depends=[AnnotationDbi]; }; xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; }; xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; }; xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; }; @@ -904,7 +903,7 @@ in with self; { ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; }; ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; }; ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; }; - yeast_db0 = derive2 { name="yeast.db0"; version="3.15.0"; sha256="0k3fp0zxyybgy0dp4i4kckdrcbmx22fgfw11qj97m9vcy3l0rvvj"; depends=[AnnotationDbi]; }; + yeast_db0 = derive2 { name="yeast.db0"; version="3.16.0"; sha256="0ibc6lzax4f3ym049s3cgg0fqhab7vlnk3xs2javvnx2vmizsi54"; depends=[AnnotationDbi]; }; yeast2_db = derive2 { name="yeast2.db"; version="3.13.0"; sha256="0aqbs3p6f3sc6nyggyk7gvg191b551rwq20009fnk0li50dg1ps6"; depends=[AnnotationDbi org_Sc_sgd_db]; }; yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; }; yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; }; @@ -913,7 +912,7 @@ in with self; { ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; }; ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; }; zebrafish_db = derive2 { name="zebrafish.db"; version="3.13.0"; sha256="13a65jxr3r5qjf82h1dr0k9qq20g14canqgqdd11k9gk5h31xhc7"; depends=[AnnotationDbi org_Dr_eg_db]; }; - zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.15.0"; sha256="15ysjz7x935aadapwnlgg57rwiwgs49wlcaak348w6x4rbk7sldz"; depends=[AnnotationDbi]; }; + zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.16.0"; sha256="186z99zsw023wq8l94l781lh7szrx72bxkg1f0ldq0lz5j3k99cn"; depends=[AnnotationDbi]; }; zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; }; zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; }; LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="2.0.1"; sha256="1f9yp9rfaydzz24bhl795379clcinibi4kavxzzavrvqfvkrgw84"; depends=[LRBaseDbi RSQLite]; broken = true; }; @@ -1003,6 +1002,12 @@ in with self; { MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.15.1"; sha256="19waylyzyga4zqygar6509gq36a8z36fbpz55msb0zsin24s0y82"; depends=[MeSHDbi]; broken = true; }; MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.15.1"; sha256="0plldymwirg8hyj9yv5jw4ldrlnvf5dx60gymb8rgmmxvrmhay66"; depends=[MeSHDbi]; broken = true; }; MeSH_db = derive2 { name="MeSH.db"; version="1.15.1"; sha256="0ixlxcakcc9f6d3dzxfdda4nh5gnivqvbi9dw7c85c0145dgnpzx"; depends=[MeSHDbi]; broken = true; }; + SNPlocs_Hsapiens_dbSNP_20101109 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20101109"; version="0.99.9"; sha256="1qxsaq2wai1rqbidz005frjw8r8m2ia9cd87ziw8i66a798rzima"; depends=[GenomicRanges IRanges S4Vectors]; broken = true; }; + SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.13"; sha256="123n3rwkq8c8gqwhbwpsvis2x1xp137hchg9y7sv7l1givb6n2kf"; depends=[BSgenome GenomicRanges IRanges]; broken = true; }; + SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.12"; sha256="1hfqbf03jd2r7ybb19rl3czrjb4h4vjqlrrilfqc8yymy7myvqqb"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; broken = true; }; + SNPlocs_Hsapiens_dbSNP142_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP142.GRCh37"; version="0.99.6"; sha256="17ql8fsali09dx1vv9178ya7zx901vwq4bnjrs35fjrjdvx6yvfd"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges]; broken = true; }; + SNPlocs_Hsapiens_dbSNP151_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP151.GRCh38"; version="0.99.21"; sha256="19j5h0dgxd2iw35p6fblj8b3z2d92zmmp60khw5zs70scd5fs9pb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; broken = true; }; + XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.13"; sha256="1fidmrf0xr7wwd4v1y7x2wwyplplbs1z8jqpfdjpc8aclcy38m3f"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; broken = true; }; greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="2.0.0"; sha256="0j4pd653vlfpd9gq6gi459lra8xhyknjrzadkx9d3zjy0hcwpj7r"; depends=[]; broken = true; }; org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.14.0"; sha256="1fs68n9xyia6v9jj8a91asmrirnh2xkqcgrjbzk7x6ss0rlwcl7w"; depends=[AnnotationDbi]; broken = true; }; ribosomaldatabaseproject11_5MgDb = derive2 { name="ribosomaldatabaseproject11.5MgDb"; version="1.00.0"; sha256="04ppa4k8p54bmkq3jm41h0v4lb5hz95cmnakfzmqfml00ir04mxp"; depends=[]; broken = true; }; diff --git a/third_party/nixpkgs/pkgs/development/r-modules/bioc-experiment-packages.nix b/third_party/nixpkgs/pkgs/development/r-modules/bioc-experiment-packages.nix index 71184527f2..1888fb3ecf 100644 --- a/third_party/nixpkgs/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/third_party/nixpkgs/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -4,420 +4,429 @@ # Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.15"; }; +let derive2 = derive { biocVersion = "3.16"; }; in with self; { - ALL = derive2 { name="ALL"; version="1.38.0"; sha256="0410045x327wmfkksshd8yishw4yxij08vn8p65cdj7hb3qy3p0z"; depends=[Biobase]; }; - ALLMLL = derive2 { name="ALLMLL"; version="1.36.0"; sha256="01dkfq412p6chbv0z9fqhizmjravrq7lgbl94zfhxx3rr2r94gvg"; depends=[affy]; }; - ARRmData = derive2 { name="ARRmData"; version="1.32.0"; sha256="1cjzr58426s9z2bwjz3wzlkh52fv0q85cw4gbjnhwakh9sr3dd5p"; depends=[]; }; - ASICSdata = derive2 { name="ASICSdata"; version="1.16.0"; sha256="0y2n8g7sxh3sygvslk9z4pcac55c2fa1cplrg3hi1m1w315wrkvv"; depends=[]; }; - Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.32.0"; sha256="06dq8930jjhw4hqzqwh5vyqaacg1dm6v4v20ilz82ynsa616mhf7"; depends=[]; }; - Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.30.0"; sha256="1hvjlv3qza7cggfc764blw51aa2vghqbkyr7vhc2zipwvx924ig3"; depends=[]; }; - Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.34.0"; sha256="1mzfzaphd42h6rcwawj521643blwp1qdimmx1k6nxjfzm4igwdvf"; depends=[]; }; - AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.34.0"; sha256="1sfxmhlhg26ksrl12crvbfn8c3q9h5n93vg3rw5m3q7bxss4ag1j"; depends=[]; }; - Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.34.0"; sha256="0hw0xrx12aa0a8l2mqshpd364acb98qani4m6mzgp419rl0bdw70"; depends=[]; }; - AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.36.0"; sha256="1k3z11wg44xrpm14lcvhbcgndz79b6i8dqld3n4xg0m5ivc11qrl"; depends=[affy]; }; - AneuFinderData = derive2 { name="AneuFinderData"; version="1.24.0"; sha256="0cncb8km0sc2xh95rgnnm38kys5ml0n8gh8cl6x7ls1xh9sm83f7"; depends=[]; }; - AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.26.0"; sha256="11rxr1wapfyif7wn6x0zjc6c470fmkhbpcjssfrmkisxrlq84xdf"; depends=[]; }; - AssessORFData = derive2 { name="AssessORFData"; version="1.14.0"; sha256="1pgwrcixr0si0977svyavls79fw7dh5fh9i4ywnqb5rziadmjcmq"; depends=[DECIPHER]; }; - BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.34.0"; sha256="0ckgm24nxq1sk54acqj49f7wi54zaipav85yzgjr72slp5rkzvmp"; depends=[beadarray GEOquery limma]; }; - BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.4.0"; sha256="17r22xnw8kq6v2nlgjibqpl927wz0y1pxqb42grqmz8dvhhxig76"; depends=[ExperimentHub minfi]; }; - BioImageDbs = derive2 { name="BioImageDbs"; version="1.4.0"; sha256="0khlz0vzymschk3bz1i2v4qj08b12qb9p3gbz86fxrcydd10084j"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; - BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.16.0"; sha256="1nj30nw545wlr710phay3jd3gd3pssx5pisyap8mall9953zzr4p"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; - CCl4 = derive2 { name="CCl4"; version="1.34.0"; sha256="00hdpa4s8n3kx6nqsmja9x7qwwwx6awjv1spa2gfkyrrj3lgzdfg"; depends=[Biobase limma]; }; - CLL = derive2 { name="CLL"; version="1.36.0"; sha256="1g3m90j86518wq4g4bd535pi3i8wylffcwvq1p0kr1jm7hfwshmn"; depends=[affy Biobase]; }; - CLLmethylation = derive2 { name="CLLmethylation"; version="1.16.0"; sha256="1nchppd564cj61lzbjl89m8jdx336f1iszq5giybjhnywvqdz0p1"; depends=[ExperimentHub SummarizedExperiment]; }; - COHCAPanno = derive2 { name="COHCAPanno"; version="1.32.0"; sha256="0r29krcwsfvyp3acx6slfv1909xh04izjdbbxhn032h02ahk2wxr"; depends=[]; }; - CONFESSdata = derive2 { name="CONFESSdata"; version="1.24.0"; sha256="1cd86s4n9k3fmzaxw7cda3x0hxxr4yk15v9wadn6gncqia5qflix"; depends=[]; }; - COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.32.0"; sha256="1kvza4sf3wlylq7x6v5rv8bz46q2bm9dd49xy3a3yw7kjfby1h9x"; depends=[]; }; - COSMIC_67 = derive2 { name="COSMIC.67"; version="1.32.0"; sha256="14gwl2j6sgfwrvzlccfjnvrlwqzjrxh7fdphs89ij57nkc750bkk"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; - CRCL18 = derive2 { name="CRCL18"; version="1.16.0"; sha256="1nph7k01d0gvgh62rk5m0p8g6clii6rihlwxa8j57sakpf19a3ap"; depends=[Biobase]; }; - CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.28.0"; sha256="0wcrsbbr5a8sh5hvagdl3jhfxy22p2dslfnzp21pxj65fj33ij2y"; depends=[Cardinal]; }; - CellMapperData = derive2 { name="CellMapperData"; version="1.22.0"; sha256="0nyik0vjm8a3mj6589civly48504a1f2a9nxn2inbfw011plg7hf"; depends=[CellMapper ExperimentHub]; }; - ChAMPdata = derive2 { name="ChAMPdata"; version="2.28.0"; sha256="1fvr7drdfzw4jwp7lilspy2mv751828a5w53y0s1f1i347vplw0s"; depends=[BiocGenerics GenomicRanges]; }; - ChIC_data = derive2 { name="ChIC.data"; version="1.16.0"; sha256="16ac969qqhpca0qlff36g85rw1m25jk5qbs30i561yznn82bk2q0"; depends=[caret genomeIntervals randomForest]; }; - ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.34.0"; sha256="09v30pxs1nqq53294mzc0vajxxymv6168fixz3gsspb3aq3xnfy2"; depends=[bigmemory]; }; - ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.20.0"; sha256="153nbfwwhn888ribapy1xh2lii0mzs9f1hczph9f4iaykyk5i9di"; depends=[]; }; - ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.34.0"; sha256="107glwdm8pjyzvb13x75qa826xbpl4x0c8k33ych54ji1gd3qmyg"; depends=[affy hexbin limma qvalue statmod]; }; - CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.12.0"; sha256="1dkz0xl9nn620mbin88yxk2vs312vpayp95i0ci5qnpifnwv63wk"; depends=[]; }; - ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.32.0"; sha256="1lfp54kics0lkdhwyr78fdpwhyf3ziw9hq2mf648a0dinrd8m9k3"; depends=[]; }; - CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.14.0"; sha256="0xvj4z8vh2sv3gl5nkrkmjdvvallixdf0dyqbnpg7q03kfvbnw44"; depends=[ExperimentHub Rdpack]; }; - CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.28.0"; sha256="0klrnxck0q14birnpwzkiwmj77hwdn6gazvdg0lqn9y6j5mbkyx1"; depends=[]; }; - DAPARdata = derive2 { name="DAPARdata"; version="1.26.5"; sha256="0jyvz7pcnxl7vc0b6rnwcc19pwijk6h26s364jskwvxk051ribsw"; depends=[MSnbase]; }; - DExMAdata = derive2 { name="DExMAdata"; version="1.4.0"; sha256="1bdc40cyfkwk3y5ab8qnql0g2k5cz025fh4n6bisil3372jick53"; depends=[Biobase]; }; - DLBCL = derive2 { name="DLBCL"; version="1.36.0"; sha256="1s9j6ssxhbb5vcik7rdkfkm1y9la1g3ys91xdfyc6hpxmzxckgvk"; depends=[Biobase]; }; - DMRcatedata = derive2 { name="DMRcatedata"; version="2.14.0"; sha256="0abmnnawn06m4dyh6hs5hcdlhwx5l5bmlygzizcy6968d9x5l4w9"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; - DREAM4 = derive2 { name="DREAM4"; version="1.31.0"; sha256="11ypc84agvq0q0v7bk0b25cm48awxay5hhhjd95gw9s7jk196i2p"; depends=[SummarizedExperiment]; }; - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.32.0"; sha256="1dx3568szd4i26jpl8i0klqqh0qgi8mgh5i4mmmkxwp44p10igzg"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; - DmelSGI = derive2 { name="DmelSGI"; version="1.28.1"; sha256="0644cwq481n5wk49q52jjwg3bkg2hpz6bcw8hf5y5v9vl2dsnwip"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; - DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.34.0"; sha256="088w2c7xyz6zsymwsm4s5999q6sry0xscrs9n8sv6qzqhpfisa5p"; depends=[EBImage]; }; - DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.6.0"; sha256="0lwcfprv17p9ng5x3arr9j67234y003n5g45aqcc39qiz075y8rv"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; - DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.32.0"; sha256="0l4n4wfd24l0lx07b5x947ngp4wyyw2iajgyam4h9n99k8cjkmnl"; depends=[]; }; - DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.14.0"; sha256="055hjyd29rjw1zh5vq0r4pqiryrjzay6fpslb7lwkp5g7xyav25w"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; - DvDdata = derive2 { name="DvDdata"; version="1.32.0"; sha256="115j17lkcr33phqx6ps90wj7jljzbf6cnah77ambzk1grfniw0hy"; depends=[]; }; - EGSEAdata = derive2 { name="EGSEAdata"; version="1.24.0"; sha256="08jhv4sq8wkwfv9klv6amf8shdm95qg9a5wl1pbxkp3bd326l1hj"; depends=[]; }; - ELMER_data = derive2 { name="ELMER.data"; version="2.20.0"; sha256="0ifnlf0fk901spsqpm8gqy8d3fizb3axff1hf7wa809n5mqzhpvf"; depends=[GenomicRanges]; }; - EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.34.0"; sha256="1p7cnp2nx0ar1gimwwsnw7brnlrj7gnpmv687wv16vmab5nnk1bx"; depends=[GenomicRanges rtracklayer ShortRead]; }; - FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.32.0"; sha256="0kg8d3npjkvpa915n3m9v8q4im4z47npgwj66xr7jjxy0fjrigg1"; depends=[]; }; - FIs = derive2 { name="FIs"; version="1.24.0"; sha256="1vmzfy33b11ac4zhc8b02ksfhnqc7ypzhb0nrgab4gd0d0mylvs1"; depends=[]; }; - FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.6.0"; sha256="0h0rh24cqh8s607wk7aaf4znzhxh88dx839mxp61glqrjhhpkp8y"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; - Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.32.0"; sha256="11hfy58hnvaarsrgvqrz51y25sdach67qksfc51id45nqr5za345"; depends=[Biobase gplots limma VennDiagram]; }; - Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.32.0"; sha256="18qr6wvvarvjzrknlyfvpdwpzw4gqwfjawaxpyhhp3yhx3n6vyxq"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; - FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.34.0"; sha256="17i096gjbsl7zgy2i3nh2nl4gdly7pkn151m0bn120cd4381r3nv"; depends=[minfi]; }; - FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="2.0.0"; sha256="1wqpibrfjzrpi2mzij9kjq74z3mi08dmfd9j7jviwq7c1hskycj4"; depends=[AnnotationHub ExperimentHub genefilter minfi nlme quadprog S4Vectors SummarizedExperiment]; }; - FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.24.0"; sha256="0f2vm1qf9irqk7xj0fdkvaigxpv2srni187378g6zbm93srrzs9d"; depends=[minfi]; }; - FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.12.0"; sha256="1pf01g7pi37rrqgqan8zq8v0q3h27p2djff3f5zqrfn3d02if4lv"; depends=[AnnotationHub ExperimentHub IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; - FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.22.0"; sha256="0kk416rfl2sgx6xfnja32jx2yjixnm306kj1h7vg3xnfy843gzin"; depends=[minfi]; }; - FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.32.0"; sha256="0s5a1lsjpwibqaz1ghwlk1my5fz11kqhymb7j42c3jx6sc3ka6g5"; depends=[minfi]; }; - GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.14.0"; sha256="1lkbgyb8camaay0yjkvhl946dmashzkraax7janqprhdjmhphv5h"; depends=[]; }; - GSBenchMark = derive2 { name="GSBenchMark"; version="1.16.0"; sha256="0j8sjp999ri7zj9xyfm5cfyggikp5ihyblqbcy16rzi02lz7ns99"; depends=[]; }; - GSE103322 = derive2 { name="GSE103322"; version="1.2.0"; sha256="0h84bf69kvqrvyp2syf3vjs8avmrjsgv3gfm2ib5wxnrgfxn6czq"; depends=[Biobase GEOquery]; }; - GSE13015 = derive2 { name="GSE13015"; version="1.4.0"; sha256="08wrw8h81mn5cg29ry11mchxl51h9nnfdxn9yjf8ivcjhklcy14f"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; - GSE159526 = derive2 { name="GSE159526"; version="1.2.0"; sha256="18i9dgvhvzjcnx63qchd6004yinqj8mzxm8yk3dcgcgb2r082f04"; depends=[]; }; - GSE62944 = derive2 { name="GSE62944"; version="1.24.0"; sha256="029fpng282x99yapi70zxlkqbh2xy6l0b4plmf2hsakg45ybg693"; depends=[Biobase GEOquery]; }; - GSVAdata = derive2 { name="GSVAdata"; version="1.32.0"; sha256="1mgjy2pg9j4zr8jacfj7h6q4c62s9mmg3dbkkirwq4gki9i5hdi0"; depends=[Biobase GSEABase hgu95a_db]; }; - GWASdata = derive2 { name="GWASdata"; version="1.34.0"; sha256="0ii9gc17hjx1gw06q63s0gykvch673rxa7czda76dvj0qvcpx5v0"; depends=[GWASTools]; }; - GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.4.0"; sha256="1asclqpk9ixbf147n246246f3ciw9qsyq1i0v0xgd1nbzbqn12pn"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; - GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.24.0"; sha256="1032lyisc5gzzsnzdahb9mz03pi7z103n8vyfjpzrri8jhrbbaya"; depends=[]; }; - HCAData = derive2 { name="HCAData"; version="1.12.0"; sha256="0dqi06mwa7ss1z28pic8kr1v85njqv596z0ik3g5qfjjfvc0h2za"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - HD2013SGI = derive2 { name="HD2013SGI"; version="1.36.0"; sha256="1wbf00bvd6rpszzfwplk6q7b5v7ih2jdjbcncg9php2ji76ij58w"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; - HDCytoData = derive2 { name="HDCytoData"; version="1.16.0"; sha256="1vdk7r7v3vvj6lils4a30sys5507qnlmdk775bl4grv16j9lf2pb"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; - HEEBOdata = derive2 { name="HEEBOdata"; version="1.34.0"; sha256="02mjs27ypk2gfa5rvgclb143a1hl3cciddcm5wmg90666q85bm2z"; depends=[]; }; - HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.36.0"; sha256="1hqljpiing2gzkizqrdv4wh3w0gwp6m9zs9y68sqhdr4f9w7azn6"; depends=[]; }; - HMP16SData = derive2 { name="HMP16SData"; version="1.16.0"; sha256="1s9h638wawm15gmqrgarxxhmwbvaq86i36s81knbzamhrw95gbgq"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; - HMP2Data = derive2 { name="HMP2Data"; version="1.10.0"; sha256="0pnrhx1x3wlxjq42igcdzdw4zgqb89gh666f7l48msqx2gk2lhly"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; - HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.16.0"; sha256="12whx0pl9461xbak5r9zi6ggx5is8sk6mgrbjwlmx3mbr9am116v"; depends=[]; }; - HarmanData = derive2 { name="HarmanData"; version="1.24.0"; sha256="1fq4kh7669fw1qxzfz42zfsw9fg30niqzz8g54qaxyl3ljbfw7f4"; depends=[]; }; - HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.18.0"; sha256="11mwkl3nahvrb85r0jgbam464w5hcwsg28a5dm9fqzrn94m15nkx"; depends=[ExperimentHub]; }; - HelloRangesData = derive2 { name="HelloRangesData"; version="1.22.0"; sha256="0lpnqzrdkq1k8rwk7b4kg3848nqiyr3wl6vncy963xqnjdwpghzc"; depends=[]; }; - HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.16.0"; sha256="0imrwr1iy3slnvs59xmpcdrly76kqy3h8bldr78dzi9r1an30gg4"; depends=[]; }; - HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.32.0"; sha256="18rdg07s4m4p9vqk3lp83x7p0zvfrfnvg2khhb7shqjdd9ya14i2"; depends=[]; }; - HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.8.0"; sha256="0m95mh6bjjvd343ysnl97npif557sjxm0nfa2iw3sr2x4pwma1zz"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; - Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.32.0"; sha256="1wmszish22yb9sh2c3i6fz9l17w0nxba44zbd2p5jks7frgryh8c"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; - HumanAffyData = derive2 { name="HumanAffyData"; version="1.22.0"; sha256="15l3fyvl534zr2nn102dg98r82iwy9g0imnmcpyrmx467p74iqb7"; depends=[Biobase ExperimentHub]; }; - IHWpaper = derive2 { name="IHWpaper"; version="1.24.0"; sha256="061v9ax5pf3f9l54xhyskz7bmb4878xf2s05z5rwhbw6hj7v9bcn"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; - ITALICSData = derive2 { name="ITALICSData"; version="2.34.0"; sha256="0vg5aq813n709hmnc1w51ynjml23q6xsgg9my3p4zim765clc1c4"; depends=[]; }; - Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.32.0"; sha256="1jlx2gpnlgivfhggl6cvj1spv4y7pyr6pxlgn8859nrw49jjdj1p"; depends=[]; }; - IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.34.0"; sha256="1h9vlif4dnzgffvab31i6qp2zcx8aph9wr71vgif9ayzc4gmx2if"; depends=[]; }; - Iyer517 = derive2 { name="Iyer517"; version="1.38.0"; sha256="0as22vdrw61hr39lx29wa17qfmz47q267l9i4l4jxldcm349f609"; depends=[Biobase]; }; - JASPAR2014 = derive2 { name="JASPAR2014"; version="1.32.0"; sha256="1palkamhw8wdnliyw9avpk1l6kpz8dhnghjpzdk4wd0dgfnfj2hr"; depends=[Biostrings]; }; - JASPAR2016 = derive2 { name="JASPAR2016"; version="1.24.0"; sha256="0g80f0zgl42p84br6ni8q0q4p2xcdc675kx1l6lf35jb845vmsgy"; depends=[]; }; - KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.16.0"; sha256="0bx4d7sjfr9p4ivwcpqblsshkymlkgyxm4mpxc3mhcv579ir2nnr"; depends=[Biobase BiocGenerics]; }; - KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.34.0"; sha256="1abzkzvz0i8yvdpwrcrdzrq1g99rhkws2b9b7zafrqn8zljwm3kc"; depends=[Biobase BiocGenerics]; }; - KOdata = derive2 { name="KOdata"; version="1.22.0"; sha256="1x26wcysd56wzijcsrs1r0rd8j9naylfbbr90b54wd24sfrq970c"; depends=[]; }; - LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.4.0"; sha256="028gzmv555wb7pq41058sbacspjzxxqrmkx690aimn93y7pg0lh3"; depends=[ExperimentHub]; }; - LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.34.0"; sha256="17awdhd23fwr3i81vfcbgnnjibjp7q3z497zmmgm5q8fx79wfrrb"; depends=[IRanges KernSmooth]; }; - ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.28.0"; sha256="0j4acswm0ixgkbgffnricap8rf1b3jp3mzlbb95p46jh9kxm9b2f"; depends=[methylPipe]; }; - LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.32.0"; sha256="1ff43qfigrbh78bdc15agvkwagc6vr6m9qjpirqkchvhj9xzdssv"; depends=[]; }; - LungCancerLines = derive2 { name="LungCancerLines"; version="0.34.0"; sha256="163za70mbpqkkm5q027vilh4q9b7pzqwakqn51hkk58qi2sbrl18"; depends=[Rsamtools]; }; - M3DExampleData = derive2 { name="M3DExampleData"; version="1.22.0"; sha256="033572y1qr5dz279rvd64w4rivxzhafnmh71cr8g9qkf04g8ani3"; depends=[]; }; - MACSdata = derive2 { name="MACSdata"; version="1.4.0"; sha256="175g4x0hvbyjwm8vs64rj19685ibdncq9ph972c1rip7nlzj0raw"; depends=[]; }; - MAQCsubset = derive2 { name="MAQCsubset"; version="1.34.0"; sha256="13r4a7m08h6n0b7c4q3w30sh1w8qxhhck66fmx95jimdjdzf04zy"; depends=[affy Biobase lumi]; }; - MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.34.0"; sha256="1k8l3vc2xrsf9hni3dfim2r9dll6cc0njzdg7ailf9hi8lbc03xp"; depends=[Biobase lumi]; }; - MEDIPSData = derive2 { name="MEDIPSData"; version="1.32.0"; sha256="02s88wlxgnl90ypgzxbspv1zqngcd3gbr9li7ng4snp5l7sgmpb7"; depends=[]; }; - MEEBOdata = derive2 { name="MEEBOdata"; version="1.34.0"; sha256="14cx5rv123z4pglbdwyndm8v1zvvf683ilv102ryzvnwsp2g2xi5"; depends=[]; }; - MIGSAdata = derive2 { name="MIGSAdata"; version="1.20.0"; sha256="0raz59fz568n9hsams91higf6f6q98nlgcapz7lnw9df7d5zmagv"; depends=[]; }; - MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.10.0"; sha256="1aibly4pw3swf6qyx4gsnfqs0p4xv8wcq37lmd0b58bvp27ficrd"; depends=[Rsamtools]; }; - MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.32.0"; sha256="1zfyp8q2849zmmp2b0ny7wbrhhsdvyv15xf2glifnhbpzdrrwjhl"; depends=[]; }; - MOFAdata = derive2 { name="MOFAdata"; version="1.12.0"; sha256="12vhcc6q52x8gxnjplb8bdn98pmrkvldc1h9hkvhgs810i96dhz9"; depends=[]; }; - MSMB = derive2 { name="MSMB"; version="1.14.0"; sha256="11a3rv09bljyvx4n3rhl83iyxsk5idl53cd1l016dc21z0wy9aki"; depends=[]; }; - MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.16.0"; sha256="0vxqpk6ldsj1bmiyjalss3k3hkwic04vs4flh75djxhg113zsxx3"; depends=[]; }; - MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.16.0"; sha256="0qgfml7p39ra6svj9i510ff01k4nbns85068a7gh1v4l85ykgd11"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.16.0"; sha256="1rjj8jxcaaz10rq7aanz3zw0z6sb1lmzy1ya8cl2icyalcm6q2k6"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.16.0"; sha256="0ppyf8pmq0pr00dvhb98qp19gcfsf9w6ix9d1yky8cf7l8czkqia"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; - MethylAidData = derive2 { name="MethylAidData"; version="1.28.0"; sha256="1gkv07qn4qxya3gcfppdg42wywzrq0ama56alf1z15knwn67a8ps"; depends=[MethylAid]; }; - MethylSeqData = derive2 { name="MethylSeqData"; version="1.6.0"; sha256="13yfqksyda8m1ckph00cw37j5nvs3aidbqb6bmg9gkw4fg21hc7i"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; - MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.10.0"; sha256="1drbxbh3qzmpwcbk8ly2r9hw5lr99mvzf5gjnl972glfy6fvjbnj"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.4.0"; sha256="1imk0s5h9v9nbwvdfd5gnmlqblx3wnws32spdp0q40p3dg5zgp4d"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; - NCIgraphData = derive2 { name="NCIgraphData"; version="1.32.0"; sha256="0k9gc22zzfcnqz5ahz250ycry1l1rczlfpbg9j1dwjbfs76zib2f"; depends=[]; }; - NGScopyData = derive2 { name="NGScopyData"; version="1.16.0"; sha256="15kggy2abfq7a92yh3r0diqz0ddxfzbk3p0v85jh8h38swv94766"; depends=[]; }; - NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.6.0"; sha256="1cy36izd1h3c7qz9f6igvljph8bmvlvhyvppwgiqr7k3paflf489"; depends=[ExperimentHub]; }; - NestLink = derive2 { name="NestLink"; version="1.12.0"; sha256="029rj9cv22cmk1arl68836mq7cav3rnc9z4kidakfk163r830v5p"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; - Neve2006 = derive2 { name="Neve2006"; version="0.34.0"; sha256="0izjgs9p8rw4psvvwg6cpwa5pbh8i9fz1q8slllarj1yndadmg0l"; depends=[annotate Biobase hgu133a_db]; }; - NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.2.0"; sha256="048j52rbdys46a3m9ki9aphrrhlh10zq4yl19qnp65h53hcz0lg5"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; - OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.14.0"; sha256="1ahyaalpn9rimy65jjmxgx5dapblvwibw153rgwjkz4k4p1v9p3v"; depends=[MultiAssayExperiment]; }; - ObMiTi = derive2 { name="ObMiTi"; version="1.4.0"; sha256="0nhlg364rvhaz9xv3hkszkzas4i1qx14nssv802fxlqqg87gjx7n"; depends=[ExperimentHub SummarizedExperiment]; }; - OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.18.0"; sha256="14pvc2d2zs3h9r3rh1rip63rj2gvm0lzf949b5jb05qhkc26wzm6"; depends=[rJava]; }; - PCHiCdata = derive2 { name="PCHiCdata"; version="1.24.0"; sha256="12qb4wl6fjqhyavvm3y41psagkzrazlvhnwhdrbcp6qg3ql8770s"; depends=[Chicago]; }; - PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.36.0"; sha256="1ia19649kxi1w1i5qlnl3hbrwq28y7mlrz3nldr76p1kgyzym6lq"; depends=[affy annotate Biobase PREDA]; }; - PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.30.0"; sha256="0shqpciskbbdz7h0w873fp9gdajsxy7wham58hsik8zg8sjq7nlq"; depends=[PWMEnrich]; }; - PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.30.0"; sha256="1giqjwwndgx23kcmwl6qlfqkqs2g57rqy9a6rk7f1a2h9n6v92vh"; depends=[PWMEnrich]; }; - PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.30.0"; sha256="1g4pxsc7rl2bg9q1gvypwydf0fr31raqw3mxdnmprgai2rv9g339"; depends=[PWMEnrich]; }; - PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.24.0"; sha256="0wf30zng7prgb4qgv8mjgg0c3d6h3ni82gb2vpv6n127vkbnv99g"; depends=[]; }; - PathNetData = derive2 { name="PathNetData"; version="1.32.0"; sha256="09mlmqax71q4ha4sq2ar33g4nsv9sszp5jl359mpncpgf08fkpnf"; depends=[]; }; - PepsNMRData = derive2 { name="PepsNMRData"; version="1.14.0"; sha256="0jfyr3ggx5i8bzhh5ajm2s78knrnf6zaq9mhy6nyq619546dcx3p"; depends=[]; }; - PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.10.0"; sha256="0qv146pgzjhmdsg8yclddvc6bpxm60j1jhjfv8f9jqsnvbllqzbm"; depends=[BiocStyle Biostrings ExperimentHub]; }; - ProData = derive2 { name="ProData"; version="1.34.0"; sha256="0zg74wn11w2fd69lykl06k9sb05z9cmac3w1s2gmfdjqy3nbpi88"; depends=[Biobase]; }; - PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.22.0"; sha256="1da28hnshxq2vy6sgs4118akxy3im92xda576vqw76nnjhp9ly1w"; depends=[CAMERA LOBSTAHS xcms]; }; - QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.26.0"; sha256="0x7n8xqf510w4hirdr8g2g4dcx2jy9psgnnb15gsvrcgvds802av"; depends=[QDNAseq]; }; - QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.26.0"; sha256="0ij9clgyczvkxc7529sz4zxdkrfpdjasmbbfycka228l1xqqnxqr"; depends=[QDNAseq]; }; - QUBICdata = derive2 { name="QUBICdata"; version="1.24.0"; sha256="08a9fvs4cigl3bx6s3my92njbj9gpkfsdyrsimng4ykkll25jwji"; depends=[]; }; - RGMQLlib = derive2 { name="RGMQLlib"; version="1.16.0"; sha256="1zkwf3wll7b786kfpbdzqhzhqmznx6bgdc4vlpzb1i2zrbsw5c5z"; depends=[]; }; - RITANdata = derive2 { name="RITANdata"; version="1.20.0"; sha256="0s8d8im2czp79qvch87y3swpfmcnpp3pa341zj3byiyc7agz1w6d"; depends=[]; }; - RLHub = derive2 { name="RLHub"; version="1.2.0"; sha256="1s6mkz1kv3rl68rzpnpi5m507d9pja2c58vzdximmpl2b764j41k"; depends=[AnnotationHub ExperimentHub]; }; - RMassBankData = derive2 { name="RMassBankData"; version="1.34.0"; sha256="147jdpi61jg87p6j957k6cca4a2sx5kzrbm4b9pszzrzrcvqq8w5"; depends=[]; }; - RNASeqRData = derive2 { name="RNASeqRData"; version="1.14.0"; sha256="1bn6d0zn40abqn7gvr82i89r1fwyaj4wb0hvg6rqcmmqdfqhbrs6"; depends=[]; }; - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.34.0"; sha256="0yamvw8r3zjmy4rvxswpdmav0n1pirk930c0z20chqzmz0fld7ls"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; - RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.10.0"; sha256="0c0y7mvj4mnq9zsirayj74pxsj78qksbsaisbfikbkbabx7v827b"; depends=[ExperimentHub ExperimentHubData]; }; - RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.34.0"; sha256="1qs34fnlkbjlnqfk65m63lqbhqd773yzi4dwv8b1rbv75hqcmywc"; depends=[]; }; - RRBSdata = derive2 { name="RRBSdata"; version="1.16.0"; sha256="18ijbyfajiydarrr2wqf7y4spf40k3vyg1bsm8qdam6l1rg40d1i"; depends=[BiSeq]; }; - RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.24.0"; sha256="1m36f15spkg6bkiympda0r4sb2nai7bnajvg3cfdypym0javmjni"; depends=[RTCGA]; }; - RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.24.0"; sha256="11r3xy84zfzp4ws9g8jn0lqbqdydlzsi6vgxh1xyf7jpv1m3qw1r"; depends=[RTCGA]; }; - RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.24.0"; sha256="0lhcmp9mm1f8biw05nlg0hiqiyad7lz2dl06x9bhyz8aggdpdx5m"; depends=[RTCGA]; }; - RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.26.0"; sha256="0iipvf5ii185q4nghwqmk3mp4s7wdbs90hk3mdc96f7qs5h53jzb"; depends=[RTCGA]; }; - RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.24.0"; sha256="12yjxqq49jbss409ms8c4a5lxn613d0cbin2h8033z2ldk73zsnp"; depends=[RTCGA]; }; - RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.24.0"; sha256="0si0xr1d6013f1jylk6srx5n4nfrlr97dywh8f4hdwdk5fsn2nsv"; depends=[RTCGA]; }; - RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.24.0"; sha256="0xf6yf3phyagmysavgrcfpv7n7h3vgvf5in1m4n5my0168b9xi35"; depends=[RTCGA]; }; - RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.26.0"; sha256="1zdpghr75vj9x4ldw0gzxkanca4zzl3fzmx61jr9jh5lkgj8h4vv"; depends=[RTCGA]; }; - RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.26.0"; sha256="1qmp5nlvqcb2699fcyxgngsyaygygajypj8m1an419xiy3kxnjdp"; depends=[RTCGA]; }; - RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.16.0"; sha256="003gf94pfsimc1f2xwm7jdndkng9hdllhvq92il5y4kjr6ky9bkr"; depends=[Biobase]; }; - RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.16.0"; sha256="1wi7g1246p04ld97x11pkb7hy4490cq5pfw404xhcmavm6sbrsps"; depends=[data_table]; }; - ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.10.0"; sha256="1z0sridzwyfq3cxvmv97c5mg96z5aylwpma35kizzi1y5y7xjqnr"; depends=[edgeR limma ReactomeGSA Seurat]; }; - RegParallel = derive2 { name="RegParallel"; version="1.14.0"; sha256="12ak24899dp4184xc2g549d22zxv297aaz1c5s3zva821bv43djq"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; - RforProteomics = derive2 { name="RforProteomics"; version="1.34.1"; sha256="11i9r36n3jqwnf1q3fawgk26zvs7zkixq8hmfam7d4kaqj5f9kvz"; depends=[BiocManager biocViews MSnbase R_utils]; }; - RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.28.0"; sha256="13vjqi6n6swz08qzadycn873rls1wkzprmf2rawx7mrbsy1cn5zh"; depends=[GenomicRanges]; }; - RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.28.0"; sha256="0wdzm89rn5z33sk3jw9f8yq6f23k5m5pv6ysbf8irw6s1g6y3xr3"; depends=[GenomicRanges]; }; - RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.4.1"; sha256="10gixzi25ka6arxapn04yxj39193f1b614ynnn1795hbz1njv7a4"; depends=[GenomicRanges]; }; - RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.28.0"; sha256="0ylvnw19j3fqgyp014zyzzpwhwj54bcl6r8gc45zs9py82zqkmyr"; depends=[GenomicRanges]; }; - RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.28.0"; sha256="129rv2zlqgqr3n64gx6y2ippqn2lrqsh6g5br1zh8awr9lbkp6bb"; depends=[GenomicRanges]; }; - RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.28.0"; sha256="1qwah52mc5pn27nm8c5byjyf121830yvfi9a4qsg5lqlwysfpnl9"; depends=[edgeR]; }; - SBGNview_data = derive2 { name="SBGNview.data"; version="1.10.0"; sha256="0gh4qs5r13x8rlf3f7kn63czbc5rzds5j27flk60yx70cinvgf6q"; depends=[bookdown knitr rmarkdown]; }; - SCATEData = derive2 { name="SCATEData"; version="1.6.0"; sha256="0g7hydh8prb9in64iyn993kg1i933l0nian00rh8n7lhhlhsmcrd"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; - SCLCBam = derive2 { name="SCLCBam"; version="1.28.0"; sha256="0mmw9dzpx66hdp0cmzq8j2w07ckg1887l50j1a6szanrm0ln04ig"; depends=[]; }; - SNAData = derive2 { name="SNAData"; version="1.42.0"; sha256="1xlqmfscf55q5j3k0ssvyyvgf5xqj9ypypdj7qcwn9izgn6ihpv1"; depends=[graph]; }; - SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.32.0"; sha256="184kf4zqy924p776pzdmlbly8whgkh7kdqqcpmyra388mmish97h"; depends=[]; }; - SNPhoodData = derive2 { name="SNPhoodData"; version="1.26.0"; sha256="1mzpkhr9apm5smp8w7rxdd61yizn283hhr2hb3s9ym05nrfgwyvy"; depends=[]; }; - STexampleData = derive2 { name="STexampleData"; version="1.4.5"; sha256="0gdizm0pkzd9hwmpbdb1pq5w4q286vycjx7vaf79gj8rrha01k5z"; depends=[ExperimentHub SpatialExperiment]; }; - SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.28.0"; sha256="1ycd1ihlms44y4hqq3n7l8hhcc3fkvihmsq3vm5434k1zx0prby6"; depends=[]; }; - SimBenchData = derive2 { name="SimBenchData"; version="1.4.0"; sha256="1g8yd5h878r2cnh9s3iwc2q60syrxyjg5riiv4jzz3xv0s1g6awd"; depends=[ExperimentHub S4Vectors]; }; - Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.24.0"; sha256="0kzwjl6a0y8j4kabnwdnprb19riqirpfcf465rz59w5gyvqg2k2q"; depends=[]; }; - SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.8.0"; sha256="0cmzjqhgjkgmji3bps387siq2s2k8flv4sksk6rh754wklry7bpm"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.4.0"; sha256="1mi27fg1xnibz41fw2xlnj81mbszs8jfxiirky5x3358xac8n5fy"; depends=[ExperimentHub]; }; - SomatiCAData = derive2 { name="SomatiCAData"; version="1.34.0"; sha256="06k9g27f92zvahr52jrdn4i504n215w02hrk3p888yh2jyypkjif"; depends=[]; }; - SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.32.0"; sha256="14yxvvw2x2qmp3vz7xiqhfdmykcmjw36sikdi046zqfcfqxq1vrw"; depends=[GenomicRanges IRanges S4Vectors]; }; - SpikeIn = derive2 { name="SpikeIn"; version="1.38.0"; sha256="1mvzixy1s5xvfgi3hf1z21mp7587v1byb6vsi9yiacc6knm55rih"; depends=[affy]; }; - SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.36.0"; sha256="1rx3lsf50v17rq5yd45w35xbh79rh6pmyx73didv4afsy8vcq984"; depends=[affy Biobase]; }; - TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.32.0"; sha256="09nawqwz6gq1bp9vgqg2nm0vb1f6id7nzqi742iz5h98p21y3jn9"; depends=[Rsamtools xtable]; }; - TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.32.0"; sha256="1hiqa6ww5rkl9vlp5fn5fzgr1yl8br8h9s8knhcyfw83bmr7ihkb"; depends=[]; }; - TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.20.0"; sha256="0ffhinj97jgk6z2qa1bk1dzijk5vjii41g8cnbs0rcshpllc0yiq"; depends=[SummarizedExperiment]; }; - TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.16.0"; sha256="1mb2z59acs1pi1gqvgjyh62wnmbxskc5l0p42gpjajsjip5x1x7g"; depends=[]; }; - TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.16.0"; sha256="0sjdk1kxpj3k4slrinywgd261jwfwa6ba6b19fz6gjik0w900f7n"; depends=[Biobase]; }; - TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.16.0"; sha256="16p8zbrrfah2hmkjysp3aagvwwn8g437yqrf1a0wg2jaxh246z1l"; depends=[Biobase]; }; - TENxBUSData = derive2 { name="TENxBUSData"; version="1.10.0"; sha256="0kblhl9b0vjngfnh8rdbsbs26pgmy1xx47kvjj7qcawb3s0blc96"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; - TENxBrainData = derive2 { name="TENxBrainData"; version="1.16.0"; sha256="1cb7sbk1hn1i6lw5k3q6p7s501q0yrighfcw0l5abvb4mz9xm1rh"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.14.0"; sha256="1mybd23fck9g4wqvhbh1fjvwzn23h91dlr7wvrh91s61yajj01hd"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.4.0"; sha256="05w1xqkd8bb2vi1i667pshpvs0913ybx87x3vlhj2fzmx5jjsllq"; depends=[ExperimentHub SpatialExperiment]; }; - TMExplorer = derive2 { name="TMExplorer"; version="1.6.2"; sha256="0xhnmg8ngvjk3zwafyj04qhij5v101q2m69fcxsqnvvzsb7vyqi2"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; - TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.14.0"; sha256="16788gn24810c3qn4s2fpffl6sgfzar2wyv5fnay3p29iv66nlww"; depends=[ExperimentHub]; }; - TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.2.0"; sha256="17vx35lgkhl5w6ny9a3dc4p5rrv5ywh1qg8lvka4d2jarv18gn8s"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; - TargetScoreData = derive2 { name="TargetScoreData"; version="1.32.0"; sha256="0xrfp2jqsp5kf85mc9bbalpr09hhzspcg0305mzf9cyf8lpms3n4"; depends=[]; }; - TargetSearchData = derive2 { name="TargetSearchData"; version="1.34.0"; sha256="16kc003g7l9k6yq0z7b6a4yzgpkz4b343fzzg3lf9ww1565jfgr0"; depends=[]; }; - TimerQuant = derive2 { name="TimerQuant"; version="1.26.0"; sha256="0hp6lfxnwmv18ci15gjlq5va2926j1cmv1lbxqjmjmkj6p28gbdy"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; - VariantToolsData = derive2 { name="VariantToolsData"; version="1.20.0"; sha256="1jdi9045iq09gb3rfnz5kc83qhqjbqkda2vg410d86v78r2zzkwp"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; - VectraPolarisData = derive2 { name="VectraPolarisData"; version="1.0.0"; sha256="0lp3fn9x4hi2fihnc66cvziw0x05qmcki06za5z7k761pbc2cgk0"; depends=[ExperimentHub SpatialExperiment]; }; - WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.28.0"; sha256="027ga0wzqmd1j792drz6qllk221d6rfva3hfqd7g0grbzb0lipnj"; depends=[]; }; - WGSmapp = derive2 { name="WGSmapp"; version="1.8.0"; sha256="08g71y2ix377if47jsymdqip6kiy0hs198r84a83pwxrbj4a66zf"; depends=[GenomicRanges]; }; - XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.34.0"; sha256="0d7gnay3jhcxmyyh45ggq6dfh83zz0s2z9rjr98dbx3jyhhy52mn"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; - adductData = derive2 { name="adductData"; version="1.12.0"; sha256="02r7p1645vhhf7wn5x0aklmf7l97h6fjb8v9mldim4waccmpyg48"; depends=[AnnotationHub ExperimentHub]; }; - affycompData = derive2 { name="affycompData"; version="1.34.0"; sha256="0lbdjmpy4460dv9s7rkbbcvhzpyqmb8hr40hbmnrjmzi8b5rs2j0"; depends=[affycomp Biobase]; }; - affydata = derive2 { name="affydata"; version="1.44.0"; sha256="1d8ims7hks536v739r5hhfkkzyzqrf398aqal3hzyfm0psv15jbp"; depends=[affy]; }; - airway = derive2 { name="airway"; version="1.16.0"; sha256="1m0llmb0z8vw8as81qb2jawcxgad5ivgl6s3vgm89zdr3a2lpxjz"; depends=[SummarizedExperiment]; }; - alpineData = derive2 { name="alpineData"; version="1.22.0"; sha256="187axprwpb25lfcxw5mxbxsav07iqkiknd0yh77iff9hhzf06van"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; - antiProfilesData = derive2 { name="antiProfilesData"; version="1.32.0"; sha256="1b8xxkg5qi8xzs4ax9cvga9b6sbvwfna5w5hi3x38lpxlzyp9p45"; depends=[Biobase]; }; - aracne_networks = derive2 { name="aracne.networks"; version="1.22.0"; sha256="0w6v6hj1c43pbadb20rxmfhxgqinz0rrz6nc59mzb6zm2ydcg7z5"; depends=[viper]; }; - bcellViper = derive2 { name="bcellViper"; version="1.32.0"; sha256="1lwiii0fp2msnlk6c9c1xyh03g5cmx1r6jf98sylcaz93s63gz0f"; depends=[Biobase]; }; - beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.34.0"; sha256="0pi4raxy7jwsbl2ds49wh00v2k5gp42y3cl7ipy5ammkjyjz4fa0"; depends=[beadarray Biobase]; }; - benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.10.0"; sha256="0v3j3v987gz6wi4z7l4wavagkk59rmkgfy9ynw6v6v53gjmwjrsd"; depends=[ExperimentHub SummarizedExperiment]; }; - beta7 = derive2 { name="beta7"; version="1.34.0"; sha256="0z161a395ykd2kylfmqql4ma6g4124sykmab488vz7cy7kmgi55j"; depends=[marray]; }; - biotmleData = derive2 { name="biotmleData"; version="1.20.0"; sha256="1ayxv1nlzfrpk1q2rrjlfyiyzhnz5hyd1mpw40qyp1sby7qkhwin"; depends=[]; }; - biscuiteerData = derive2 { name="biscuiteerData"; version="1.10.0"; sha256="0nda6b8mkv93s513y0xfgxvi7zn8v07jx323ii709rknlncm6qqw"; depends=[AnnotationHub curl ExperimentHub]; }; - bladderbatch = derive2 { name="bladderbatch"; version="1.34.0"; sha256="1dpbaqsqizyi99r0imf5m4lndhhrkyiaqii9bi8rp18fjbjdd72k"; depends=[Biobase]; }; - blimaTestingData = derive2 { name="blimaTestingData"; version="1.16.0"; sha256="1xngnh8fgwnvxcycnxzbaqlwr478aqacj9xh9zcig6xvkqbvdan0"; depends=[]; }; - bodymapRat = derive2 { name="bodymapRat"; version="1.12.0"; sha256="0cm0pxk47axi2kp0jl2ix03vbg4q54fsq9wbrlz6gy0zmab05qy8"; depends=[ExperimentHub SummarizedExperiment]; }; - breakpointRdata = derive2 { name="breakpointRdata"; version="1.14.0"; sha256="19xmwvx70m4s6naxw1m13qdyxaswmq94mhxc71gnfr80w9l28qdx"; depends=[]; }; - breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.34.0"; sha256="1a658xkiimhbhjic4mwgxccsrqfi11l8sjyhxlqzwhqpg25s52yc"; depends=[]; }; - breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.34.0"; sha256="11vbsam86zq8zpc871gnham6dpvz4pivj8bjk64r9nclcl6msflm"; depends=[]; }; - breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.34.0"; sha256="11p77vhp4qjibglc2gyj3ljcgzxijh6gakq1jy9x08hwbzbk59cp"; depends=[]; }; - breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.34.0"; sha256="12736cr61fnaq2gladlnpa6247zk3mbgx4gr3m3swfr1xzfjmr96"; depends=[]; }; - breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.34.0"; sha256="1688njb87jlbil7j0lpa6cvzqs9j82nxjcjqwxvizwwmwmsybygw"; depends=[]; }; - breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.34.0"; sha256="0w1vd8v1ld81a20l1rzjbfsf3xyd6r85ifgpyl63rmk4zlyk9qa1"; depends=[]; }; - brgedata = derive2 { name="brgedata"; version="1.18.0"; sha256="0ls9qyv6p8g64cibrxavch2z9yb057mmhk0wj8a3qzp2yammp866"; depends=[Biobase SummarizedExperiment]; }; - bronchialIL13 = derive2 { name="bronchialIL13"; version="1.34.0"; sha256="08jal96cv14wym7c6yv10yh4qcgzqdgi6x231v21asmawl0gjv8n"; depends=[affy]; }; - bsseqData = derive2 { name="bsseqData"; version="0.34.0"; sha256="1izn9qwsvr6nic70b5iwpn06if2wvrsh4rvrhlj275q4s91l1apk"; depends=[bsseq]; }; - cMap2data = derive2 { name="cMap2data"; version="1.32.0"; sha256="1x28q46y1794hr8b2bmdy5agwy3j8chdk6lczwkqsqb7qaccbgxl"; depends=[]; }; - cancerdata = derive2 { name="cancerdata"; version="1.34.0"; sha256="06dijhvjzi60fd7bh6m4inf1yvc7d2p6swmp887pfjap5id99hb3"; depends=[Biobase]; }; - ccTutorial = derive2 { name="ccTutorial"; version="1.34.0"; sha256="1ag9jv5y6ky3xqqvsln7xcpa7z4p4jm3vqz16dmxm92ldkrpff8f"; depends=[affy Biobase Ringo topGO]; }; - ccdata = derive2 { name="ccdata"; version="1.22.0"; sha256="1glgrc3z7q2pigivhh4q0aa4y354bxfxyhinz8vdr2nkrnh5fl6c"; depends=[]; }; - celarefData = derive2 { name="celarefData"; version="1.14.0"; sha256="0awh198v9swj6mpa3pihvms9ml74798hpywhfqmmakpqb8i5nmk8"; depends=[]; }; - celldex = derive2 { name="celldex"; version="1.6.0"; sha256="1fjldmhb9yg6yr3aq5ldvc8xwqw71ix4cdlr53xxckgwljjq7x10"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; - chipenrich_data = derive2 { name="chipenrich.data"; version="2.20.0"; sha256="1hg728bncvw008fzpw0cxy2haq5ynnriymyb2dwwa9yi9bzqhcs2"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; - chipseqDBData = derive2 { name="chipseqDBData"; version="1.12.0"; sha256="06j0jh3kg0n0jfa34iwmdc4j1h96wgvg0i5rwiidmdzii30y24a3"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; - chromstaRData = derive2 { name="chromstaRData"; version="1.22.0"; sha256="1ajwnkibpi01c93nrplxhy6grw8jj5219g4pii4rkan4k5815kv1"; depends=[]; }; - clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.6.0"; sha256="1ynj9h7cgg8kdb97g8bd0rvzpyjfqbs91c1jcj5gsml2mqn20zb9"; depends=[ExperimentHub]; }; - cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.32.0"; sha256="08ag0mj6wbhgrs5csvri6rm2c61hxzspgm6p2ggikxp8b98dq249"; depends=[cnvGSA]; }; - colonCA = derive2 { name="colonCA"; version="1.38.0"; sha256="15pid97gpg0hcdh8xw8r72qlm1k76l6m0zmh12f1q2z792bqv3v2"; depends=[Biobase]; }; - crisprScoreData = derive2 { name="crisprScoreData"; version="1.0.0"; sha256="0qv93yx25zrs7xn3w8f298b1v0jmgsdzcnlivhr8va95rlaa36zp"; depends=[ExperimentHub]; }; - curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.8.0"; sha256="0xhm84d1g1mv4x8lavwx87346123nd7957pbvw5ajhg42ipz8qwl"; depends=[]; }; - curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.12.0"; sha256="1c5mg1f4d6rk4dx0vfs5f8fk15gh9gqnh2n0z6a21ial3pz2hq16"; depends=[ExperimentHub SummarizedExperiment]; }; - curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.12.0"; sha256="11gb3c4bvzxhhxrzi5y6p2703r4nz9qf8w996sh9giqq0kdk1iaf"; depends=[SummarizedExperiment]; }; - curatedBladderData = derive2 { name="curatedBladderData"; version="1.32.0"; sha256="1qbwxfpicrqq2xmghj0j93nk6fyn9nqr3kj7hh4hhzrv71kgrlha"; depends=[affy]; }; - curatedBreastData = derive2 { name="curatedBreastData"; version="2.24.0"; sha256="1lfb8dw4c3dg2dxqdy0ibv53savz6qyavj03lyxvzw3rg052lwfy"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; - curatedCRCData = derive2 { name="curatedCRCData"; version="2.28.0"; sha256="18cwky29pic2ixabr5ckzl98g9xm1yj36l3xaxk37jav7brnabx1"; depends=[BiocGenerics nlme]; }; - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.4.2"; sha256="1fxzb60jqbx4kc4lqk0gcbq1981gzjxvpapk96sswidjid44gg2r"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; - curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.34.0"; sha256="0fnvsjxs3rfr0vwlnqzgs3121jad85vff3f34rjiq5mmgj8d3szs"; depends=[affy BiocGenerics]; }; - curatedTBData = derive2 { name="curatedTBData"; version="1.2.0"; sha256="1ca5vnyzcdarrdczffj88nlchzkx3nrhpxh4r8446yvgm9nq1f13"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; - curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.18.0"; sha256="0h3mpwy6lhyn8hfry13sdjgb35gqyi3g26igfjqzshc5wvsniwpr"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - davidTiling = derive2 { name="davidTiling"; version="1.36.0"; sha256="1a2wcgw7dpsk86516c0qqy6lspc5ilip9ym1hdjmdmldw653qgw6"; depends=[Biobase GO_db tilingArray]; }; - depmap = derive2 { name="depmap"; version="1.10.0"; sha256="0378blcy4k440xfjsfr6d8fzgv8v1gbfd7jq2jqawj8s3in3g8sc"; depends=[AnnotationHub dplyr ExperimentHub]; }; - derfinderData = derive2 { name="derfinderData"; version="2.14.0"; sha256="02p2zz9i9g6z20fvc29i31nrw5jamw0sk9yf3yxq3211xprrq556"; depends=[]; }; - diffloopdata = derive2 { name="diffloopdata"; version="1.24.0"; sha256="1h7d755akxbsb68mhddqck759hfb5ahcv99040xl5pl0wg76qhx4"; depends=[]; }; - diggitdata = derive2 { name="diggitdata"; version="1.28.0"; sha256="1i1bj3fhkp9g3szcsf4z78mq2nwk9s7gbhwzjz87gpq1ly0wi5zm"; depends=[Biobase viper]; }; - dorothea = derive2 { name="dorothea"; version="1.8.0"; sha256="0yby99xncj8625rjc71wfp164bkbc00kbqaxx1nhhcxx5wyb5li7"; depends=[bcellViper dplyr magrittr viper]; }; - dressCheck = derive2 { name="dressCheck"; version="0.34.0"; sha256="05rajbidn01mv711xm8w5ida2dxkykwby5q3fm6wr9vk9hdg6h8y"; depends=[Biobase]; }; - dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.36.0"; sha256="01j7gwzdg6q2l2nqbmmhvg4c06irjlgvqj3gcwff5m2372p7qgn5"; depends=[GEOquery marray]; }; - easierData = derive2 { name="easierData"; version="1.2.0"; sha256="1hvm8xhjm7xx2m8r9w2hfk1naj37mnyzg76ig2yszi7g20xxkn07"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; - ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.36.0"; sha256="1nncm8k9xrn7pi89skbqkp01bwnkr8myzxvwvdqwwpdhz23h67iq"; depends=[affy ecolicdf]; }; - emtdata = derive2 { name="emtdata"; version="1.4.0"; sha256="0wfqyyncn8y7dbpiq9ydqglbci1zcaxqph78h3f0m91gsyb46n48"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; - epimutacionsData = derive2 { name="epimutacionsData"; version="1.0.0"; sha256="00l7mjryq7zf83mf9zwfs6pih7lncyz0310rvbgmgxij0d2ihcs0"; depends=[]; }; - estrogen = derive2 { name="estrogen"; version="1.42.0"; sha256="0s6gaxks4z6dnj304j2hliqyqs8iwqdvf5xmca31xms9sdix57nv"; depends=[]; }; - etec16s = derive2 { name="etec16s"; version="1.24.0"; sha256="1s4jq4nzl33fll7k9b88divyhi8phkv2n5629q2qa8ag2rvdw50g"; depends=[Biobase metagenomeSeq]; }; - ewceData = derive2 { name="ewceData"; version="1.4.0"; sha256="14wnj0dxdbrr57blvi1kmgjxcmy8h6b85zyjk4ksnz3jqnb3x4zx"; depends=[ExperimentHub]; }; - faahKO = derive2 { name="faahKO"; version="1.36.0"; sha256="1z23c2nlgf1ssfa9fmh6qbymsgwj8w0sslnyyiwmq6f1c5slagdk"; depends=[xcms]; }; - fabiaData = derive2 { name="fabiaData"; version="1.34.0"; sha256="0ps43wp6ywz3g92dckcmczh8g26fz4hg2w63bjzkpyl9pp6g70jn"; depends=[Biobase]; }; - ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.34.0"; sha256="1493i3pgq12afp97rm5nlslkfqh87vr0hrw2r3m6d76xkaxmq47f"; depends=[lumi]; }; - fibroEset = derive2 { name="fibroEset"; version="1.38.0"; sha256="0hyb9cmqpnl98gpvjh5mrrbnzpwsqlnngm0h88rca6jsxgzypyxg"; depends=[Biobase]; }; - fission = derive2 { name="fission"; version="1.16.0"; sha256="1xp8a0qvskb4arl2h937zvdx23z7xgjfa46lfk35pyl398vvr04p"; depends=[SummarizedExperiment]; }; - flowPloidyData = derive2 { name="flowPloidyData"; version="1.22.0"; sha256="12n5zaikca17w1bwc4hb9hxj28vdka1gz2x62hzd552baimv694c"; depends=[]; }; - flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.8.0"; sha256="1z67crxi4vd2s4sbraj8i1qdnbdjr28gij2ygv3j0ys6jscwvz6q"; depends=[]; }; - frmaExampleData = derive2 { name="frmaExampleData"; version="1.32.0"; sha256="1am40f3b3g6rgbsji52a674x8s5xk2zgbkv7z4mrwcqy3qbvv2kp"; depends=[]; }; - furrowSeg = derive2 { name="furrowSeg"; version="1.24.0"; sha256="04bnqdbfmkl42cpflq4krwcc6g5znkajw56vpcxa8sahcqlzlz50"; depends=[abind dplyr EBImage locfit tiff]; }; - gageData = derive2 { name="gageData"; version="2.34.0"; sha256="00s2aig9r0bvk45brc0shildrgl2z0i0k8xlvqc9h1s274nnslk9"; depends=[]; }; - gaschYHS = derive2 { name="gaschYHS"; version="1.34.0"; sha256="07s469vdj9zbqaq660asv10qlsg03ga1ln0hkq5xxqqjnwliy0nr"; depends=[Biobase]; }; - gatingMLData = derive2 { name="gatingMLData"; version="2.36.0"; sha256="0ljyahrd2v4kz8y26h16apc2yz8a1fg54190ryy30v7gfdaacbad"; depends=[]; }; - gcspikelite = derive2 { name="gcspikelite"; version="1.34.0"; sha256="1lhgsinx128qi2rcm577smpkdnh91c9nn05737pp0ww2ys8pziqk"; depends=[]; }; - geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.32.0"; sha256="0p4rmd3qszsnyn47mfbk96zfa0bhpyyvsh4ma1ligjrsnmkicsaz"; depends=[GenomicFeatures rtracklayer]; }; - genomationData = derive2 { name="genomationData"; version="1.28.0"; sha256="0ckdgmarndpz6r0y9sd4nmypzjgivj32w2890yl15xmxkx4397fh"; depends=[]; }; - golubEsets = derive2 { name="golubEsets"; version="1.38.0"; sha256="02f30hxg9ap1na59vgq6zqpnxba1yv38v458bx2ppxj2pj7jldh1"; depends=[Biobase]; }; - gpaExample = derive2 { name="gpaExample"; version="1.8.0"; sha256="0zv7djz65lm8a3d8ybg1nm5r2b7byh55g78v5jmskh6jkv9njd9w"; depends=[]; }; - grndata = derive2 { name="grndata"; version="1.28.0"; sha256="14hn88p65jkd44skf07v358rr5hbncp3mlsz2xl5mfyxgl124fcd"; depends=[]; }; - h5vcData = derive2 { name="h5vcData"; version="2.16.0"; sha256="04cwqilsaiw9x709lhb9vrv75lhvhfx7k7zw400nf5h4pn0cgxw4"; depends=[]; }; - hapmap100khind = derive2 { name="hapmap100khind"; version="1.38.0"; sha256="0rabyxvlxgzawdwa3q0xy2iqdlkcgmzbmqc4052ndm7wdh4h4s97"; depends=[]; }; - hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.38.0"; sha256="162wx2g4ghh6b92d9q446js7qk2j5ahajvbynckg2ggnzavd7v1f"; depends=[]; }; - hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.38.0"; sha256="0wpnr9xvpaki01hqkh5pm29d2vcb153646k9b9m3xvlv5ra3qr9f"; depends=[]; }; - hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.38.0"; sha256="1g9kv2jd0527m000scr871pk08h98cf9b8mnasgbm5isvfpn0fwk"; depends=[]; }; - hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.38.0"; sha256="0dwfgz9pyx24mn3vncxp3ddb0bj42zxjd6p5pm34rzwzsw8zlvby"; depends=[]; }; - hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.38.0"; sha256="0byanf3i5yws4hwnxpd5b2vkr9iqvc0h2nlbxqhbc6b5ny7n0fsc"; depends=[]; }; - harbChIP = derive2 { name="harbChIP"; version="1.34.0"; sha256="1q17lynp7alv95p6vn515iamyqz3s0vhj3vnyzrjyhswb1vy3fs4"; depends=[Biobase Biostrings IRanges]; }; - healthyControlsPresenceChecker = derive2 { name="healthyControlsPresenceChecker"; version="1.0.0"; sha256="1sjicfsamv22r5f913g4xjspnrpqcrdcq5w9yqwqn7wz88sbarld"; depends=[geneExpressionFromGEO GEOquery magrittr xml2]; }; - healthyFlowData = derive2 { name="healthyFlowData"; version="1.34.0"; sha256="0iw2a6fdnhq1zqhldsrg7z8b55qg23l721rgx2i8v09ivsrk79hj"; depends=[flowCore]; }; - hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.34.0"; sha256="1n4jhlgvqggyf2qa2iqxkxf6hqsaawq32h5r8ns904jdllq4ryp3"; depends=[]; }; - hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.16.0"; sha256="1ws42wafyvr5931vjv0zcyfg979zhjms8kfmmcjjwqbvgp6b8nxd"; depends=[Biobase]; }; - hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.34.0"; sha256="1q8a5away3iz8skc093djn85sakixhijr2i0yfhbl50y1jpfxn9c"; depends=[]; }; - hgu2beta7 = derive2 { name="hgu2beta7"; version="1.36.0"; sha256="0zmhxv5fjyfjxd7rqcr79yb8vkk014hinphmq604pzcdym29dmaa"; depends=[]; }; - humanStemCell = derive2 { name="humanStemCell"; version="0.36.0"; sha256="1i6gn462x09g9c6fb98bgchs7hwnrv5wanbpy41zcird6a8jb205"; depends=[Biobase hgu133plus2_db]; }; - imcdatasets = derive2 { name="imcdatasets"; version="1.4.1"; sha256="0ck6fyra8jj8v3x1pckl90m4a9ch51xgjs6nlpva5pkwffjldzq9"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment]; }; - kidpack = derive2 { name="kidpack"; version="1.38.0"; sha256="0pwrf9h1qgfb20jjd5izy6f01v14bzg43k2d8mmx3553ha9w1xi4"; depends=[Biobase]; }; - leeBamViews = derive2 { name="leeBamViews"; version="1.32.0"; sha256="0nqrg0k5g62kqbmhq0y795afx34zxzlmgsjszs8byfdhd8gbpz14"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; - leukemiasEset = derive2 { name="leukemiasEset"; version="1.32.0"; sha256="1hzwdcfv0w4y877h4ahr2cmvv0svkjv73l77d7m309ikfbzmdqax"; depends=[Biobase]; }; - lumiBarnes = derive2 { name="lumiBarnes"; version="1.36.0"; sha256="072i02dshanxfxwpg7ibcp2vxyyqfw7q28r2a3f3lq9gph0pd865"; depends=[Biobase lumi]; }; - lungExpression = derive2 { name="lungExpression"; version="0.34.0"; sha256="1lskd4gapfhsrl5ydzv3bjs5n7085wzx91dq8bziv7pmhzl9pvyw"; depends=[Biobase]; }; - lydata = derive2 { name="lydata"; version="1.22.0"; sha256="1z48qsbbxxjlfwmb7xyasskdy95paab96077ps45v41cwkwjv7kd"; depends=[]; }; - mAPKLData = derive2 { name="mAPKLData"; version="1.28.0"; sha256="1122nnkhhcyrf36v3saybfi3llarjsa8fnh6f5c41d5x6fyjp2mf"; depends=[]; }; - mCSEAdata = derive2 { name="mCSEAdata"; version="1.16.0"; sha256="0n6dk7n7gi3ffdwvji6nkl90hhrb1jg0c1dyj0xrd8sf2cnpn8kh"; depends=[]; }; - macrophage = derive2 { name="macrophage"; version="1.12.0"; sha256="0ml8v92w021fmzsn4yl90ap3l4l3b9c1pk8pzsrm122p82wzlyms"; depends=[]; }; - mammaPrintData = derive2 { name="mammaPrintData"; version="1.32.0"; sha256="03h0pjwaasbb635l1csfrcsjzrfw18cmk071p9f4w57rkx11wbmi"; depends=[]; }; - maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.40.0"; sha256="1smi1kaygc8gdcdkv358ghblwvsz8239g4ck2d4h8gq9z4jkkqn4"; depends=[]; }; - mcsurvdata = derive2 { name="mcsurvdata"; version="1.14.0"; sha256="0nrss5d2vb88wygsm4b44zxkaq619svjf8j3gg5r6x13ss5x0vcr"; depends=[AnnotationHub Biobase ExperimentHub]; }; - metaMSdata = derive2 { name="metaMSdata"; version="1.32.0"; sha256="0n1nnljns0aq8xxa881r8p72wwipfbx4046wz97034y39i0l9rcj"; depends=[]; }; - methylclockData = derive2 { name="methylclockData"; version="1.4.0"; sha256="0qzyc01rhmay3h1pmbk0jskszrmpgsng32j40j8wqnnpzhmklwf2"; depends=[ExperimentHub ExperimentHubData]; }; - miRNATarget = derive2 { name="miRNATarget"; version="1.34.0"; sha256="1yfsdkxc7ns4z0swrjg2pq3kfpgq9rrhrxsiqljnkw65c1g4h3q3"; depends=[Biobase]; }; - miRcompData = derive2 { name="miRcompData"; version="1.26.0"; sha256="1ww126vnlq2c36py0939i3vv7y6pf9kb6akgq8x96l90ri8zdpcg"; depends=[]; }; - microRNAome = derive2 { name="microRNAome"; version="1.18.0"; sha256="0p187zs1fhi55zm4yjbvx6xvdlynlm1r66x9dcd2xldwam8qmliz"; depends=[SummarizedExperiment]; }; - microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.4.0"; sha256="1pbwx3cq78k333mmrmy8h68l1k3g3r62a8qjx8ysg8q99q1yn63w"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - minfiData = derive2 { name="minfiData"; version="0.42.0"; sha256="04idswjc4kslnpx1yf990pd8fl7wk5v9x4rgbv73d0s0g578ajd6"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; - minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.22.0"; sha256="0mkq4q39fjbal4qrx8vx51579kzhhyryk017cgjzqj9cwycyr720"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; - minionSummaryData = derive2 { name="minionSummaryData"; version="1.26.0"; sha256="03h803p8xcndy5gsrdy20rb4714rxj31g31z82rg7hkwn0cvqxkx"; depends=[]; }; - mosaicsExample = derive2 { name="mosaicsExample"; version="1.34.0"; sha256="13fjkal88ag1dxw5n4dpkbzrnhffqjn4pym5vwzgnczyggz40c8y"; depends=[]; }; - mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.34.0"; sha256="0ip3238dkyy9773q85535q09yawxnc1f1sdvl9s0ydys7v4rcxih"; depends=[]; }; - msPurityData = derive2 { name="msPurityData"; version="1.24.0"; sha256="05l7ym2vnspnkdl78f5b2jyby8x4qvjhmbhqmkd8nsz7sb2q2f67"; depends=[]; }; - msd16s = derive2 { name="msd16s"; version="1.16.0"; sha256="0bnvsfgsl8ssin8s7g3lmdfk9jvbbzs6cn748i5vl5ac96567bb5"; depends=[Biobase metagenomeSeq]; }; - msdata = derive2 { name="msdata"; version="0.36.0"; sha256="0nqb7d7fa9l15bxy3s9wmy2h79jb6ldwww0hzk5mifabacmzx691"; depends=[]; }; - msigdb = derive2 { name="msigdb"; version="1.4.0"; sha256="1qla2hjzq99513nyknhbb44zpp65q52j81mn6g9ya3wg9686ggvg"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; - msqc1 = derive2 { name="msqc1"; version="1.24.0"; sha256="0j0gqn32chs0vmcj309xk9y2qh856zj6ps16n39ad4d0bbc1l7y1"; depends=[lattice]; }; - mtbls2 = derive2 { name="mtbls2"; version="1.26.0"; sha256="1k0ravb8h23xvk8jlc1vh73slsw5alqcfdrw8p6mzggzfd6l189i"; depends=[]; }; - muscData = derive2 { name="muscData"; version="1.10.0"; sha256="1vwvjjd53j4im8jpckcgc4x9ldy3s8gzknc30yw1i67f4zw7zlcq"; depends=[ExperimentHub SingleCellExperiment]; }; - mvoutData = derive2 { name="mvoutData"; version="1.32.0"; sha256="08mmwc8x47wc91ncil6bqbhy1iz8hr153yma52zbsw0nhdhs7b87"; depends=[affy Biobase lumi]; }; - nanotubes = derive2 { name="nanotubes"; version="1.12.0"; sha256="0cm2d8wp6dy6m2jbj42inbba117zzf137g86xy07hn563izksqcw"; depends=[]; }; - nullrangesData = derive2 { name="nullrangesData"; version="1.2.0"; sha256="1yynisn5zw41kaspli9zs2k03w8ar457p0dsd37lph3cfdgniysv"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; - oct4 = derive2 { name="oct4"; version="1.12.0"; sha256="0jkhk1p7z5ydxwab2g9ayhqfmxayrrwswr9lwbx84n7jm3gdkncr"; depends=[]; }; - optimalFlowData = derive2 { name="optimalFlowData"; version="1.8.0"; sha256="0g72cliwh3jpgz3qsfp3rv3glhp6v0ligfzp3kh0xgb6g9nwc246"; depends=[]; }; - pRolocdata = derive2 { name="pRolocdata"; version="1.34.0"; sha256="1b1kvnym9aigkpv4n1wp8ybp507hwiqv8hc3x4hv72kdlfphy0qh"; depends=[Biobase MSnbase]; }; - parathyroidSE = derive2 { name="parathyroidSE"; version="1.34.0"; sha256="1h33x55c4gbzmh085skqif04wdcvjp2l9fm55qzwws27kwd30c16"; depends=[SummarizedExperiment]; }; - pasilla = derive2 { name="pasilla"; version="1.24.0"; sha256="1vsxh7mv2krkbdqs5gsgjsxarjbll0bpyk94syrwh56z67n7jyib"; depends=[DEXSeq]; }; - pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.34.0"; sha256="1dcnas0d592kcmnd95g3l13b8fxf0kiwbpyxmhfvrmms9i2d6dfc"; depends=[]; }; - pcxnData = derive2 { name="pcxnData"; version="2.18.0"; sha256="1gwc793c7r7qi5bmwlxh6fg59v8jzs753ilw102s5r4kq8r1fb4h"; depends=[]; }; - pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.34.0"; sha256="1r9xqqgx2asn47j1ib1z3v5ybxd88mjfyi7b64llhlv1s9igp645"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pepDat = derive2 { name="pepDat"; version="1.16.0"; sha256="079wasdnd4j7pply4lmr7b41i84gj1x6yfp6pq7f7kbmr451c9hq"; depends=[GenomicRanges]; }; - plasFIA = derive2 { name="plasFIA"; version="1.24.0"; sha256="0r69msj7yby4kw2nj1am7ww7ia7kian4bpx2j3v4il909hw8xr76"; depends=[proFIA]; }; - plotgardenerData = derive2 { name="plotgardenerData"; version="1.2.0"; sha256="0arag030zfvpd6niq5bxxkkc3dg86hhl9dcbh1knjgqa3njfyh50"; depends=[]; }; - ppiData = derive2 { name="ppiData"; version="0.34.0"; sha256="10xbp12wim5kj1h2vkxn9x22fd92s2038w653y81jwbh2hyidybf"; depends=[AnnotationDbi graph]; }; - prebsdata = derive2 { name="prebsdata"; version="1.32.0"; sha256="1sza6d27rx05dg7xbzypjjf2h7m4jawhb2y0w1n8k9d57b9m6sij"; depends=[]; }; - preciseTADhub = derive2 { name="preciseTADhub"; version="1.4.0"; sha256="0sraqrvhxf7xva522rsj9hhl0hhb89fxrihywbw2w0vpv7ia08j7"; depends=[ExperimentHub]; }; - prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.24.0"; sha256="0kyfr8s89dv9psl4r0g7mr02y8yvsjpd6k2iqzbdwj3jqhwxcw4p"; depends=[Biobase]; }; - prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.24.0"; sha256="1qsaz1fqf9iky3a4sjy0di4bamg3996qna99jcxp7nal0bj1q44j"; depends=[Biobase]; }; - prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.24.0"; sha256="0a9yph83xrpql6k5ixic37v3ccpyf358d0ia5bgn05xfacd1il4b"; depends=[Biobase]; }; - prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.24.0"; sha256="1g657bfhk2x5gldkxy3k4c66cjnlj0j5j0daza9y8sdibk6cagxf"; depends=[Biobase]; }; - prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.24.0"; sha256="17pz2k8h1i9x37d2j4v4ybnyn2fl79d839bv41jxiciacxp3az5c"; depends=[Biobase]; }; - ptairData = derive2 { name="ptairData"; version="1.4.0"; sha256="1lplv1g38a7d3mlqdy18b7n9n2l834a2rqifsvvxdfimww8vdihq"; depends=[rhdf5 signal]; }; - pumadata = derive2 { name="pumadata"; version="2.32.0"; sha256="1zw60nvpdbnnbfr6ffjbhp7aay9xlk8r4dwi8di9g2352xp9i14h"; depends=[Biobase oligo puma]; }; - pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.10.0"; sha256="11p1z66q6bpvh89cp1rqnm0kkfkdxfm47p7nfd9c45y15qpzbplw"; depends=[ExperimentHub]; }; - qPLEXdata = derive2 { name="qPLEXdata"; version="1.14.0"; sha256="046xpnqp4pdvldbmw4klkjlhpzvjhv1zq8vamzzqc9hni6sjl3cc"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; - rRDPData = derive2 { name="rRDPData"; version="1.16.0"; sha256="0lnff12cb120dl48pi5p2sc77vp4zapr35w9p9l669hwdlvy2jv5"; depends=[rRDP]; }; - rcellminerData = derive2 { name="rcellminerData"; version="2.18.0"; sha256="1bpsdnhdkyva7rbcxgwf0y85dngs2l43hb2c5wp6iafzvnb402dp"; depends=[Biobase]; }; - restfulSEData = derive2 { name="restfulSEData"; version="1.18.0"; sha256="095iv7hvdl26y2mbwa3cv0gdr7gn3irgwm72cvz4y5lkr4ifyafx"; depends=[DelayedArray ExperimentHub HDF5Array SummarizedExperiment]; }; - rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.34.0"; sha256="1yc5vz3cvpwk449lga3f5w1x1xjp8a7c17k30z3wim4iv6g8ag9x"; depends=[]; }; - sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.20.0"; sha256="1sg4h9pw3lwa1k01s9nhbh1l0w8w81q6m254hqs1ga8k8kawkvap"; depends=[SummarizedExperiment]; }; - scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.2.1"; sha256="1ks9fh82jqg9kcfkb1ys6b42j1074zffp1lyb3h287dw6yv8zxx5"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; - scRNAseq = derive2 { name="scRNAseq"; version="2.10.0"; sha256="131x1q69grn16rr7lr6vyphds5mdx5z3kc6nhpfisrxjia9dly0x"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scTHI_data = derive2 { name="scTHI.data"; version="1.8.0"; sha256="1awrjw0fhypxlz7s4lj0fvhmj0av8xgh191zz5imqvimfzjvf985"; depends=[]; }; - scanMiRData = derive2 { name="scanMiRData"; version="1.2.0"; sha256="06d91vwbirp75f5aaflny7ngfhnz834a1750vah2x1jwikd427zg"; depends=[scanMiR]; }; - scpdata = derive2 { name="scpdata"; version="1.4.0"; sha256="0rxrsay1ifzwkd32jjfa91phnjvndk136w5is01rx1hzibpv1x7j"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; - seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.28.0"; sha256="0ay0gzjl6j4aqaq7cybqw0cv3xfxhg83psib3z0m438gs2in1011"; depends=[]; }; - seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.32.0"; sha256="0khf5mjl9slfvba6x876j8d2ngijwxfm8k2d01fj9sh3hdbi7y8n"; depends=[]; }; - seqc = derive2 { name="seqc"; version="1.30.0"; sha256="1x9cs6sfzwnppkb80n1vgy3lj85bk7c81994r3c12sna5sil8df7"; depends=[Biobase]; }; - serumStimulation = derive2 { name="serumStimulation"; version="1.32.0"; sha256="18mbg1n6c38qcz4r5n83x2796hb0wqhzqv997nlvjmxrzb53sh9z"; depends=[]; }; - sesameData = derive2 { name="sesameData"; version="1.14.0"; sha256="1c9bcrah4vz2035px6yv8djqrmpnn7i6y01pgy1hqlwsn24px3nf"; depends=[AnnotationHub ExperimentHub GenomeInfoDb GenomicRanges IRanges readr S4Vectors stringr]; }; - seventyGeneData = derive2 { name="seventyGeneData"; version="1.32.0"; sha256="0axbgyn0cqhfq7mqivawpd0q268r2njm3igv6hjqcvvp2s7gzffn"; depends=[]; }; - shinyMethylData = derive2 { name="shinyMethylData"; version="1.16.0"; sha256="1ww9abjsqyyprz5706d4ny3i42a0czrdmxjaq3wlryiqgn54jrl3"; depends=[]; }; - signatureSearchData = derive2 { name="signatureSearchData"; version="1.10.0"; sha256="1wq9pk2g4zriijrlc6bqizi4rvmag3m0nrnml3qhqhn1jcc065g3"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; }; - simpIntLists = derive2 { name="simpIntLists"; version="1.32.0"; sha256="07jscl1yd3dix0igsxw1fsyhsgqhqf0la6p6958jypy2chih4wp8"; depends=[]; }; - spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.2.0"; sha256="126agbyablnn3b2gh4fkvlqf1mm1krvk01bxl0x41f6l4dm5gj6a"; depends=[ExperimentHub SummarizedExperiment]; }; - spatialLIBD = derive2 { name="spatialLIBD"; version="1.8.11"; sha256="0yk749566rcvcw415s8ix185jf1vvmip2079mf81kjr8jsmlmz4c"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite magick Matrix paletteer plotly png RColorBrewer rtracklayer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; }; - spqnData = derive2 { name="spqnData"; version="1.8.0"; sha256="190jkvra5zsml0hxmw96nxg3fz5cnq6apcxcqsncq9raz30w8qqq"; depends=[SummarizedExperiment]; }; - stemHypoxia = derive2 { name="stemHypoxia"; version="1.32.0"; sha256="0rfnka092sd0qb6vs7yawwkjw763rdaayyr7bv4618qqx2i6kllz"; depends=[]; }; - stjudem = derive2 { name="stjudem"; version="1.36.0"; sha256="0a7qrs9r76zlzd6kmfid8wzvv3k47y3w95ydqphd5pic9c6r56a3"; depends=[]; }; - synapterdata = derive2 { name="synapterdata"; version="1.34.0"; sha256="15lndkk8cgk5sy2ddc7g98nnjcd89j5a7c8kxz7jvd0j2vq1g0ga"; depends=[synapter]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="2.0.1"; sha256="1g5641hkx2di7j2kgd13v1zih4ddm9wljrzi7swr0dxb01vqvckh"; depends=[BiocGenerics Biostrings jsonlite remotes]; }; - tartare = derive2 { name="tartare"; version="1.10.0"; sha256="1857nmpd64zlbk0i7jk7ql04kkmyznr355jd3zml44x2zbip96mg"; depends=[AnnotationHub ExperimentHub]; }; - timecoursedata = derive2 { name="timecoursedata"; version="1.6.0"; sha256="0f2m6d4q6ayk6sqz3d4gnh4w9c5z91m4j8pjfi1932q4a86smhr5"; depends=[SummarizedExperiment]; }; - tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.34.0"; sha256="01kb0papl4rac44bc4rmjmjx424xb00rw3dvnc78qzz03cx90xq4"; depends=[]; }; - tinesath1probe = derive2 { name="tinesath1probe"; version="1.34.0"; sha256="0cadrq4aklyzy3sflnpwy8n4r7pkmb3mn0n1y0yqpljlqbdd9g8l"; depends=[AnnotationDbi]; }; - tissueTreg = derive2 { name="tissueTreg"; version="1.16.0"; sha256="14hiv2d3z502j334342ab0rqf1qwapf2g56ipbwm4jdw2yz2aqbd"; depends=[]; }; - tofsimsData = derive2 { name="tofsimsData"; version="1.24.0"; sha256="1gykmyv9lyylpha5a2fh2n0dhmd70mnhr502m0kimwg5hr2z1w8z"; depends=[]; }; - topdownrdata = derive2 { name="topdownrdata"; version="1.18.0"; sha256="0d0532jc8lpqh99yqygl4mxg7al4a74mdm8j45a36qa4q53m4xpf"; depends=[topdownr]; }; - tuberculosis = derive2 { name="tuberculosis"; version="1.2.0"; sha256="0b9286bcb4c4ygalrp2la1s48rq7csz83l2svgbx9da6jdc32n65"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.34.0"; sha256="0wnplck86wsc8d86cvk2a6w21s809cpvzdj1y17x1p5f9f0zkra7"; depends=[Biobase]; }; - tximportData = derive2 { name="tximportData"; version="1.24.0"; sha256="0mgbwpybg2xd6x1ijrflmjh5w63qz6ylnzszbbyp437n618m7riy"; depends=[]; }; - vulcandata = derive2 { name="vulcandata"; version="1.18.0"; sha256="1y5gjk6l97bdyk1pm9c2yqszcykd0pdmc81sn7g4m0x81mhd81c6"; depends=[]; }; - xcoredata = derive2 { name="xcoredata"; version="1.0.0"; sha256="0qwg720yhjkmdhh6i5g4pwwf2pfjbxj74nb9n20sypzc673dab9z"; depends=[ExperimentHub]; }; - yeastCC = derive2 { name="yeastCC"; version="1.36.0"; sha256="1mpfsn9iyw37yxipdczj15hnxyvdrcn5sr2xvqlxj7csyfp2kxw9"; depends=[Biobase]; }; - yeastExpData = derive2 { name="yeastExpData"; version="0.42.0"; sha256="0sg4lr09s0iw99j7j7fq9xfaidnfxc4n0jjgnhghpdcqymm8ns82"; depends=[graph]; }; - yeastGSData = derive2 { name="yeastGSData"; version="0.34.0"; sha256="0bbqj899cr6d1nkf80bcbksnp4689kp38hg74gwvbj8ln7v0f7mk"; depends=[]; }; - yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.32.0"; sha256="0rb3mf94g5px7xk7r25xjgx9hiawjlkv9zsqf6n2z2gnglfplic1"; depends=[]; }; - yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.34.0"; sha256="0167p4g10ixbmnjyh08yz8dsai6d1ifr8ms5vd6jgmfwddznk8mi"; depends=[]; }; - zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.16.0"; sha256="0nsdm0fvqjak54rg2f2jsn3l0a1y53mzb7pm2f7p0x75a7ays9p5"; depends=[]; }; + ALL = derive2 { name="ALL"; version="1.40.0"; sha256="1klf604g4m0g6y12swqz9f8gc20k0c79sxzj7zk6v4jadi1fhsqw"; depends=[Biobase]; }; + ALLMLL = derive2 { name="ALLMLL"; version="1.38.0"; sha256="1r6ny7v9q4h6gx7i28rp9w7a120ln9kd77a4ygiiy92s9d5qi6xn"; depends=[affy]; }; + ARRmData = derive2 { name="ARRmData"; version="1.34.0"; sha256="1c48gfb5h0chfs205hgl5gfb1rlsz355cv5xq0acj9cvzwv25sh6"; depends=[]; }; + ASICSdata = derive2 { name="ASICSdata"; version="1.18.0"; sha256="0s2zfa42yfx5mcbngp979fca6afszxgflrzhn7spry4y071xvkvb"; depends=[]; }; + Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.34.0"; sha256="1bkzak8pwdz23isrfvw71y3y0jbmy11v50wg4z4xhwp0fhfk21fw"; depends=[]; }; + Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.32.0"; sha256="1vvcia75d4n29kph83pi0ihrkjfl2jb46qvwzrhjyccxp1l16bvc"; depends=[]; }; + Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.36.0"; sha256="03dsz3wzxrxykq4km8787n6082i1r140s4afw6r3m29yfk02rqfy"; depends=[]; }; + AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.36.0"; sha256="15dddf2kzcdpvmskszsyxb9i613632d0dfjfv01mlbmvd4q0h20s"; depends=[]; }; + Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.36.0"; sha256="125firpilbi9xlb61cp641g972cwqd23p9vrpczicjw6dm6mh5km"; depends=[]; }; + AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.38.0"; sha256="0v2r91h6ydzyrcn4ryhrd5q0p5dlq6w1alcfbbk43nvmjqidm2r3"; depends=[affy]; }; + AneuFinderData = derive2 { name="AneuFinderData"; version="1.26.0"; sha256="01g4g0sz46psi86792fqyazr6vzbcrcrhzw2k9k94cawppnlfnwh"; depends=[]; }; + AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.28.0"; sha256="109qzyjhvmpm0q6ghfvsmrrskvjd6djlki7kn63jfsfqphx1v7db"; depends=[]; }; + AssessORFData = derive2 { name="AssessORFData"; version="1.16.0"; sha256="092f1nivs9xvibbs380ahwfx3f7msnbbb62bj94ihs2swsq7b1y8"; depends=[DECIPHER]; }; + BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.36.0"; sha256="079qj26622s9jb2kw1wpd5bjihmj3a9mif4y86zjna7jm1jdvzv8"; depends=[beadarray GEOquery limma]; }; + BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.6.0"; sha256="0mh10sg95djkzp9w7bjr4ggy86a0pakfi2008fk4xikjc3q7ky24"; depends=[ExperimentHub minfi]; }; + BioImageDbs = derive2 { name="BioImageDbs"; version="1.6.0"; sha256="0r4m5qchzglpx4dn95ss0xfd3cqd7vxafjg869y8fxpayjn11dqg"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; + BioPlex = derive2 { name="BioPlex"; version="1.4.2"; sha256="091d9gywkkbgd922sgqqqnj20sjnrsarqrhqbw99x9ccnfzqr2jn"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; }; + BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.18.0"; sha256="1284qhij9663b382aq4nq3zl3jjsj5gdh3bfqj6sjfvbvx4pmcpg"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; + CCl4 = derive2 { name="CCl4"; version="1.36.0"; sha256="09zja5jzz7lh11cyjvczfgic8z4bq35j6f63irwwizxvp861w902"; depends=[Biobase limma]; }; + CLL = derive2 { name="CLL"; version="1.38.0"; sha256="109sspddzqg08gqf5xacf2vbjs672i2d3n6a6wzr8isdyar40xx1"; depends=[affy Biobase]; }; + CLLmethylation = derive2 { name="CLLmethylation"; version="1.18.0"; sha256="0xagl4f5cn9wax4jjh4csfd4p53ljnh09b063rk8dqm7adr2c788"; depends=[ExperimentHub SummarizedExperiment]; }; + COHCAPanno = derive2 { name="COHCAPanno"; version="1.34.0"; sha256="0fps1b4kfhv4n1gm3yqspjbrh6gnq8hl1q2apzb1ir1gnfm28ird"; depends=[]; }; + CONFESSdata = derive2 { name="CONFESSdata"; version="1.26.0"; sha256="03dyzdj79377srmcxh3fc0z321g3mkcp88lknwndw1xa44n2hqd5"; depends=[]; }; + COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.34.0"; sha256="05m5288ilcisifnhkq6vdgrchhkp21nc8kmdm7kdszl9d4xrj7mq"; depends=[]; }; + COSMIC_67 = derive2 { name="COSMIC.67"; version="1.34.0"; sha256="0ga0islkm9m4qry37qkw8z0zs7amqky7fy0i418k9gn0ba06xd0s"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; + CRCL18 = derive2 { name="CRCL18"; version="1.18.0"; sha256="0515xmrbhvkw8zk62ivyzlr8p0mmmqbayy73vdwzz3a5gd3zh7zl"; depends=[Biobase]; }; + CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.30.0"; sha256="17hwxp251ghwmlywa7rxvlj0m3fqdf3pm57m0rfxnda0izx6xvk2"; depends=[Cardinal]; }; + CellMapperData = derive2 { name="CellMapperData"; version="1.24.0"; sha256="192jaz5fss0bz64jn52c7lnj81ih89dhrz6pjkyllsh8ffvqb067"; depends=[CellMapper ExperimentHub]; }; + ChAMPdata = derive2 { name="ChAMPdata"; version="2.30.0"; sha256="0rz762szfl02h4d3dj7ckd41ji9mdsja8nxqw6fl086z337041zw"; depends=[BiocGenerics GenomicRanges]; }; + ChIC_data = derive2 { name="ChIC.data"; version="1.18.0"; sha256="1ii43y280mqb0csa3g7xrw3aj1lsl4rk1hnakg27jnjk7c36jg0c"; depends=[caret genomeIntervals randomForest]; }; + ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.36.0"; sha256="049y1mvf7d1ajqnk1hs72ak41j16dz2zhsmq3b6817a4frrnmb0a"; depends=[bigmemory]; }; + ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.22.0"; sha256="1jgvf953b3pmkri02avajmqx7p0ylljdl4v2qiwvxi0gxzlb2qwn"; depends=[]; }; + ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.36.0"; sha256="1jlm1l5vkk18r0y5jk0rz8a30f71cpzq5wimff4xnka30zkk83r9"; depends=[affy hexbin limma qvalue statmod]; }; + CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.14.0"; sha256="0qnhs5kvf9a1vsg1y4ky6cb0awnf9fj6n4n37yz9ss7dl3rpn3qk"; depends=[]; }; + ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.34.0"; sha256="0f7spc4l9y8hrv6fscgxj9fy9hnqm9h8r4nya97jzbwryj9yzm2s"; depends=[]; }; + CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.16.0"; sha256="0s3fp0pblwpf8g1ply64n9kq41mn59gyf1wh9lncks8sfxdk1h0a"; depends=[ExperimentHub Rdpack]; }; + CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.30.0"; sha256="19yqcvfji8263wdcqmjbmmz2xzi0nl9d4jdwsqrvv6ja5pqm2l7w"; depends=[]; }; + DAPARdata = derive2 { name="DAPARdata"; version="1.28.0"; sha256="0ix3z12g2xff16bkiynly8y75ygrapv65p1ml9z7p4ap04rd718v"; depends=[MSnbase]; }; + DExMAdata = derive2 { name="DExMAdata"; version="1.6.0"; sha256="16k017y3bf0z3h05gldb611hl10vqllyl5346nnpmw8pqihcq5by"; depends=[Biobase]; }; + DLBCL = derive2 { name="DLBCL"; version="1.38.0"; sha256="1adzmfk67xl3lqlhkbb6r2kkprkbjwb6n77ynj4mx6gi4b3s8b2n"; depends=[Biobase]; }; + DMRcatedata = derive2 { name="DMRcatedata"; version="2.16.0"; sha256="1p67kw8l8367rkn72wjlsdc4gw1cbpi8w928dmpa1x833ypfpkc6"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.34.0"; sha256="0zk9z0bmn15wsrscdh30cxps1c5qi06xhzbvl8v2lals6hxqgixz"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; + DmelSGI = derive2 { name="DmelSGI"; version="1.30.0"; sha256="1isn7ay22dpvnsdjlmanfj7pdqnim4dcrq2rf8dflydgjq6hc06k"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; + DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.36.0"; sha256="1xq303q0wmrk73band29yfpb8dacg6187qxpr3pqacksj3dsp70m"; depends=[EBImage]; }; + DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.8.0"; sha256="1yzq3yddqv06j1j3wpw92ydsgi2k67dirvjn7127iwpp865hs12r"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; + DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.34.0"; sha256="1j8mnkk71w2wp18wp65z2rwj4ql5s6pqggv2rd02l0jq9n89w8wl"; depends=[]; }; + DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.16.0"; sha256="0dha80wlb9w1brq22lfmcm267axkm56pwfxcd1szbsg3w2fv3wrn"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; + DvDdata = derive2 { name="DvDdata"; version="1.34.0"; sha256="1x22s36aq8ppyphc58gsd5s7chkkkf6dhand39c8b9npybx9rx8d"; depends=[]; }; + EGSEAdata = derive2 { name="EGSEAdata"; version="1.26.0"; sha256="0df556k4wbwmn8cjpfq38c3mxicncz2j4f9f7xxsj5gjd2ww2p2r"; depends=[]; }; + ELMER_data = derive2 { name="ELMER.data"; version="2.22.0"; sha256="1603g55jkdq3f66xp84cj7x3f7bgw2s4bhscyjvb1hagcnwg48lf"; depends=[GenomicRanges]; }; + EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.36.0"; sha256="1bpm8ds36iydbd4nv5ifrp8spdlx21k14dx18awm61d9wzg6fk1p"; depends=[GenomicRanges rtracklayer ShortRead]; }; + EpiMix_data = derive2 { name="EpiMix.data"; version="1.0.0"; sha256="1n65fyq8syiaix876ll1zjjx5cm9k63p92x9by6xbpv1xqmqbpzz"; depends=[ExperimentHub]; }; + FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.34.0"; sha256="06fqm4rj5c6l1aynvz3xqv9lk8w1s57m9ncfb2729sgyp7zg64pp"; depends=[]; }; + FIs = derive2 { name="FIs"; version="1.26.0"; sha256="13f8q3gjgbbycp6g81jr5aq5w759mhs4niacqbzmfa5bksvsmlmn"; depends=[]; }; + FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.8.0"; sha256="0bcsvgjr03z5r2xxlzrzcpqw0vqh0vfghrwlsismxp8dp46kjr25"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; + Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.34.0"; sha256="1dgqhgmzhfnwyjr1wcz41ggri8i63d9b4malr1izd8gnh9c80an3"; depends=[Biobase gplots limma VennDiagram]; }; + Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.34.0"; sha256="1hhsyk98q23j2d5y4l4kj15vypms9yn7skw3wcxmwl95cgdwzb9s"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; + FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.36.0"; sha256="1ha9qsp5g3g2yhnk574x6xhg95bb29ywvmg3ns1c50z69v6wbraq"; depends=[minfi]; }; + FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="2.2.0"; sha256="1vybj69jxnirqg6ik03q3pb1vv23z8mir7wpi2ys7iljf5ixzgl1"; depends=[AnnotationHub ExperimentHub genefilter minfi nlme quadprog S4Vectors SummarizedExperiment]; }; + FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.26.0"; sha256="08wyfv2z8xcmany5m9lpz3lv7ql4qq95vb14fvq7bmhy1ahbr9by"; depends=[minfi]; }; + FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.14.0"; sha256="062dk56shf41qdd4wm8g8vgbcg1bpj24v9x7q4kvb2cmcqyr233s"; depends=[AnnotationHub ExperimentHub IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; + FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.24.0"; sha256="0c6v5cxw3xy0zlw3dlfx5gwijlkwmq4m2irg04j9fng90zm2kmh2"; depends=[minfi]; }; + FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.34.0"; sha256="0nchavb8jwkp7jpf5nkfdzavjqjsr7d9g3cll7w2zczgz00ysfij"; depends=[minfi]; }; + GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.16.0"; sha256="0ryrsmjsvv02p9zrcw6h45c8hrq6pvg3r18j3jbcsz069awsy9ik"; depends=[]; }; + GSBenchMark = derive2 { name="GSBenchMark"; version="1.18.0"; sha256="0n1ag0a34hfrfrnnzdd6n2dk05hxrpgr9mfnxlnyffcn36fv7fwv"; depends=[]; }; + GSE103322 = derive2 { name="GSE103322"; version="1.4.0"; sha256="148p24hh7j07ny2jxwnvk5lq6313xmaqmn80amv1qvf78wfnf3bf"; depends=[Biobase GEOquery]; }; + GSE13015 = derive2 { name="GSE13015"; version="1.6.0"; sha256="1r3w675f53n0z6ii6xlsahyg33mc0zmcsirgp2nb4ab6r22y36sa"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; + GSE159526 = derive2 { name="GSE159526"; version="1.4.0"; sha256="125q8bl3qaf8lnadqh96g651y8ydkcsg8szcni1rjsnw6hhqasxm"; depends=[]; }; + GSE62944 = derive2 { name="GSE62944"; version="1.26.0"; sha256="1d3zyyir01i4isqbk1sjy1d0jkrjqiyciyqqklhigk1jyk4irpvj"; depends=[Biobase GEOquery]; }; + GSVAdata = derive2 { name="GSVAdata"; version="1.34.0"; sha256="009y1ywfb11d9yrqnknjgynpm732fixrg8xk49ggf1m0r8qd7p0k"; depends=[Biobase GSEABase hgu95a_db]; }; + GWASdata = derive2 { name="GWASdata"; version="1.36.0"; sha256="0nibj1n8gqzrrfpggryfl80zk68hf3a3n4ndjqi9rnn5kl9aw5b6"; depends=[GWASTools]; }; + GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.6.0"; sha256="1ascrsvildfcp4kqzy9zdx97dyqkdl8nhkv356sqy6scd4fdjknf"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; + GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.26.0"; sha256="0mkzaqsqqyn9d4z3cgr10csimqklxqvymsjphn05m8d5dhfzcwn7"; depends=[]; }; + HCAData = derive2 { name="HCAData"; version="1.14.0"; sha256="14734jlxq0l3l3187frw40qfsgx7cv04hxl772wvaahnd8wmga9z"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + HD2013SGI = derive2 { name="HD2013SGI"; version="1.38.0"; sha256="0i2sv80qw3svk8kl8yrg4n6mxjw589fz0kpqn9hbaj07z57g7rb5"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; + HDCytoData = derive2 { name="HDCytoData"; version="1.18.0"; sha256="1fn8q6ds10z3ymdarkfyh88pcqnrry9yhzammp84vf86f0bl8mrc"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; + HEEBOdata = derive2 { name="HEEBOdata"; version="1.36.0"; sha256="1jm0i9d6vwbhp7xxy571n0c4gc8zga0vividkkk5wkr3mzc00qm6"; depends=[]; }; + HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.38.0"; sha256="0yf0xwkjhb6inxpxy2r258zkqmx286v7d0hcrp9s2jy1jxsvzyrg"; depends=[]; }; + HMP16SData = derive2 { name="HMP16SData"; version="1.18.0"; sha256="1zp5s3c95nkq4ngm6v96wah4h1y47pgwxpg1x8w0ysjiswjag74f"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; + HMP2Data = derive2 { name="HMP2Data"; version="1.12.0"; sha256="1m57kd35m7j8jvai5lh252433s14fn181vpm4bz38wqh4dj41qhs"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; + HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.18.0"; sha256="0ir4vd88p0pfh4sbsks65dijxadxj2xdc5rrjznvchj39ia48lp9"; depends=[]; }; + HarmanData = derive2 { name="HarmanData"; version="1.26.0"; sha256="17gl8j02gnninbq386b7jmbnai77hg3w78lvikcm1450mlk1vkk3"; depends=[]; }; + HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.20.0"; sha256="07gh5gfzprdvv0cif999k2v8rijhjqsyw6yrmn6mf2hyf7hc09r1"; depends=[ExperimentHub]; }; + HelloRangesData = derive2 { name="HelloRangesData"; version="1.24.0"; sha256="01mdjz9l6fnzd4yz31xyhraqczd64dsay37pqmc1w9kd9934sfrm"; depends=[]; }; + HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.18.0"; sha256="0l9v1hycb47cjmk1k1b8vvry7amqgl74l72qigznx9h64dl0vqpc"; depends=[]; }; + HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.34.0"; sha256="1il9j759bw6h84v9ap1wf5fvn4i34nhdn0rb9flls1xbrmi1bsl6"; depends=[]; }; + HiContactsData = derive2 { name="HiContactsData"; version="1.0.0"; sha256="1hp46qr1abllmqqimgk8lp2fb7mfb9zc9kqcfzc8fx7jbyxsqj7q"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; + HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.10.0"; sha256="1v6qd15k36ynmy45kd5rg7rfs9xp054jgbwksxc0hz3v50nqjl6w"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; + Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.34.0"; sha256="0a87ldx5hwlvk64ynd4jm0mf3sbn2yxq2d87c9gwpcc471jglqn6"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; + HumanAffyData = derive2 { name="HumanAffyData"; version="1.24.0"; sha256="0sbxl4jh697220888ssi825iiakzj94m4k871lg42xn22d7991wc"; depends=[Biobase ExperimentHub]; }; + IHWpaper = derive2 { name="IHWpaper"; version="1.26.0"; sha256="01p50lcybzr8bk7hdzmi71bwwy51xan5wba2ppis6z68gjvyn4hf"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; + ITALICSData = derive2 { name="ITALICSData"; version="2.36.0"; sha256="09d2igic3b5p7wpq98hb2lffxm1nfq9mwmnqlbdn3jv49pgz3hmw"; depends=[]; }; + Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.34.0"; sha256="1c1iqxi17s1a1sa1vab2ma7pjq1dxal7ibsiahj66ys0pa4sm42p"; depends=[]; }; + IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.36.0"; sha256="0xsnp9bxsmsrqnlshd0g8smqmianlna8vapln96ix47mjj0hcq9c"; depends=[]; }; + Iyer517 = derive2 { name="Iyer517"; version="1.40.0"; sha256="0y8a5rsnk0m6x4sfp8fnc7c54fv3pwsps19h4hfs0qxzvxzzjrf3"; depends=[Biobase]; }; + JASPAR2014 = derive2 { name="JASPAR2014"; version="1.34.0"; sha256="0g95w9fk7rjn39xqcpyxx87mzizrkmpmrh76msgkmwpmdvjz6hkh"; depends=[Biostrings]; }; + JASPAR2016 = derive2 { name="JASPAR2016"; version="1.26.0"; sha256="1y60fslisdxwm27g0sjzjg6r5qf8bjp4hyb1k2plxpdarvl7jzqf"; depends=[]; }; + KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.18.0"; sha256="0x582iygpw580i8afdxw41jn7gv6mp0hcy9mx8n75nkknvzs4w0g"; depends=[Biobase BiocGenerics]; }; + KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.36.0"; sha256="09syk5d39blzzi1z8l8w1ia8ahrxhrwync7kmlwnvssbd5q1q0rd"; depends=[Biobase BiocGenerics]; }; + KOdata = derive2 { name="KOdata"; version="1.24.0"; sha256="1kclj56823bc9mn8r3khwfwak342ja69afcmllfg2cfr4al6ikgh"; depends=[]; }; + LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.6.0"; sha256="0r0p7v482d9r06cwgqy23la238dff9ga70iap7wyhn8xdfcp7rfm"; depends=[ExperimentHub]; }; + LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.36.0"; sha256="03vgrpgw3sqfrvbgm7r6avwkl85qmxl4fy0r92ikh8wr6waw7a62"; depends=[IRanges KernSmooth]; }; + ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.30.0"; sha256="1733sz2qhkrvalx0vk7xa2plddz40psfmnfpq3zkf6v4i1cvnvmx"; depends=[methylPipe]; }; + LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.34.0"; sha256="10fbjpk50nqpm91r9fw94q8dqcz1jg4smbjjx2nbwvl1qzzr1qpj"; depends=[]; }; + LungCancerLines = derive2 { name="LungCancerLines"; version="0.36.0"; sha256="053zb04n45mypnaws2g4id6pzlbmgdzwrg7x3i6gcw566vdai82n"; depends=[Rsamtools]; }; + M3DExampleData = derive2 { name="M3DExampleData"; version="1.24.0"; sha256="0cmgb0qx78awjx6gcf5nyd7am0p86ga9l7ps8h8z9llr0d0yr0hc"; depends=[]; }; + MACSdata = derive2 { name="MACSdata"; version="1.6.0"; sha256="04pimm8g4m2mahrpdwc45l1cnsg8h0737qh932k9g9740pmhv1pd"; depends=[]; }; + MAQCsubset = derive2 { name="MAQCsubset"; version="1.36.0"; sha256="0k40plz86v4bwcwny0zd3icq4zjqfglbnrk957bvbsgacjag87cq"; depends=[affy Biobase lumi]; }; + MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.36.0"; sha256="1vr0avq39p8hg5zzx6fy1n9p4anvlcjbngkhiq6nprmp2s8064vg"; depends=[Biobase lumi]; }; + MEDIPSData = derive2 { name="MEDIPSData"; version="1.34.0"; sha256="1h9dhirmq30j9jds21f1a3jvijy9z0mp9j08phd79sallkcvsqna"; depends=[]; }; + MEEBOdata = derive2 { name="MEEBOdata"; version="1.36.0"; sha256="0klm6xv25g3x7yf814l1jbi16cknb2xbh6yn1cx9a0p3rgm49j1l"; depends=[]; }; + MIGSAdata = derive2 { name="MIGSAdata"; version="1.22.0"; sha256="01sz73h1xkqck6d0yliy2i4nx0v980bxm30y7rn6g3nxw9qs5q1m"; depends=[]; }; + MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.12.0"; sha256="1k5ay043ys2npmmb2mk01cpdxvl1ccysl5bw5aj9d2h7mixxfc27"; depends=[Rsamtools]; }; + MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.34.0"; sha256="0hnvjsbj6iaaaqslgfnqzlk59q6fmyzsjbscqvl2pfdiliy2mkix"; depends=[]; }; + MOFAdata = derive2 { name="MOFAdata"; version="1.14.0"; sha256="141rvb3ra457hgc8hhskc4j6xl6k7f13amrlrw5nvx4n77wfsv8b"; depends=[]; }; + MSMB = derive2 { name="MSMB"; version="1.16.0"; sha256="0rz9cvpsnq0lnbahnpsbdxwcvh6z7id3lrzcr2bcxvnkj4ah95q4"; depends=[tibble]; }; + MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.18.0"; sha256="1f2zsy950rn437cgqpai5nlchpza100sf2acqdq8cyqiq4ip7q8j"; depends=[]; }; + MerfishData = derive2 { name="MerfishData"; version="1.0.0"; sha256="0jcq6n0x57i11c793alj3kj813vs37fmi01z5yl1lsx41cgflpll"; depends=[AnnotationHub BumpyMatrix EBImage ExperimentHub S4Vectors SpatialExperiment SummarizedExperiment]; }; + MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.18.0"; sha256="0wjgk3j9r6shk7ava3isdyiihdf7b9dz701jkv3nhg87x3nhvwfh"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.18.0"; sha256="0miznxb2d7smfzcyddhx64lip9xxn4bcq7x2f9fn9047qfky0w9i"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.18.0"; sha256="1icm9y4x2qglp9gy66j71ngn61snbxy3gz3m6mdgj2vw02f93xif"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; + MethylAidData = derive2 { name="MethylAidData"; version="1.30.0"; sha256="0j53ilxqvl7gaplkmrslz1ywm3fybqyri2psdr5c34kay7j50sng"; depends=[MethylAid]; }; + MethylSeqData = derive2 { name="MethylSeqData"; version="1.8.0"; sha256="0rfl5xz23kbvjxf2sf25j526a8252dvd6zmg4x9pj7fqyf7yvfdd"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; + MicrobiomeBenchmarkData = derive2 { name="MicrobiomeBenchmarkData"; version="1.0.0"; sha256="06m0yi3379g8kvhs0amcc9r5d0np9xwq2a85vk8iz3xi6sqbbbzj"; depends=[ape BiocFileCache S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; + MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.12.0"; sha256="0icgs53mfaiary8gjifasjalc9942fr876w61bxssdg7v4jn76ss"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.6.0"; sha256="0y5xibhd5w37ks3fvn6gsgqd5whxvg1rbd4li2ank0v56mvazfij"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; + NCIgraphData = derive2 { name="NCIgraphData"; version="1.34.0"; sha256="0sismlawhq1dz29v1532x5ha1n2pdv2fa43kzma4xdf1vafj5ham"; depends=[]; }; + NGScopyData = derive2 { name="NGScopyData"; version="1.18.0"; sha256="1w3hpmqf6030smwb4r61czwz0qsr2kz8z11q8z8819bj0czvr32x"; depends=[]; }; + NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.8.0"; sha256="0k548ib7yi29xcs2c0y46c3vwi6fkqsp3njwbn4acm85pr93z54g"; depends=[ExperimentHub]; }; + NestLink = derive2 { name="NestLink"; version="1.14.0"; sha256="0qk0c506j2gwp25hyqriii7cwh1h2rbvhahm1akxvr4j1v2pk01l"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; + NetActivityData = derive2 { name="NetActivityData"; version="1.0.0"; sha256="12h25q7vp23rac1d3lgf99fclj2h3615bkxfhy117971i4n2z4i4"; depends=[]; }; + Neve2006 = derive2 { name="Neve2006"; version="0.36.0"; sha256="0i7l60ys7mnqllx30r6g8jif460z90j8cw59jv13hbym5dhdk4bi"; depends=[annotate Biobase hgu133a_db]; }; + NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.4.0"; sha256="1k0krkmp13l9w6jwidc1snm5z11g3wgw2pmp9jzsxyxjimha0vh2"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; + OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.16.0"; sha256="16jyvgj9rcinsjixczwq6rw8wpl0lxyf7h5sajf47306nxx5w073"; depends=[MultiAssayExperiment]; }; + ObMiTi = derive2 { name="ObMiTi"; version="1.6.0"; sha256="04hcr5ng7gqz6200zvdkfgrw1j3zkvqqh6yn5zsf9q2vwxibxyz5"; depends=[ExperimentHub SummarizedExperiment]; }; + OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.20.0"; sha256="1338j9fqcizrfnx7wi97qpsa14yyzy34hb11q3017ry1hkhy28qd"; depends=[rJava]; }; + PCHiCdata = derive2 { name="PCHiCdata"; version="1.26.0"; sha256="10nlrqsxv655d489fy1vchgi4iw3pfxr6xwhylgcj94nigfy632y"; depends=[Chicago]; }; + PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.38.0"; sha256="1wmvx2vp8yfz4mx4gmcgvisxp5cn0cf3pznxh01gwiaydpafiskr"; depends=[affy annotate Biobase PREDA]; }; + PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.32.0"; sha256="1bikxs5h6wl8l3l6avgh42h3d8yz1b98s15fggl62gkncaygqfr7"; depends=[PWMEnrich]; }; + PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.32.0"; sha256="0ckvjrzr7hqr7lls7z8pdg58k0xpm7hnk8dl2vfy03ddgl7ma34v"; depends=[PWMEnrich]; }; + PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.32.0"; sha256="1hwlwkmvkf9q3vi9c7ipr3h6hfrda5xm6gbzv03bmc3pcwwqa2j9"; depends=[PWMEnrich]; }; + PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.26.0"; sha256="0mhb68rm3dmzdpm7x0ffyz9a44fidgr1gxpnwxppslklrnm7g24q"; depends=[]; }; + PathNetData = derive2 { name="PathNetData"; version="1.34.0"; sha256="131d10id8b93hd7g0z3rl4z8cvv5h5gdi3x636b2z2is821jvnbr"; depends=[]; }; + PepsNMRData = derive2 { name="PepsNMRData"; version="1.16.0"; sha256="13n9calm3k480sxcgqhvw519m1ss51ysiin7cxhipjfjf8fdnbkb"; depends=[]; }; + PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.12.0"; sha256="1kpg1a2p6cb4xa7ynlr3wmx7hx1l2xhxccbyqd8mnwn0r52njwmw"; depends=[BiocStyle Biostrings ExperimentHub]; }; + ProData = derive2 { name="ProData"; version="1.36.0"; sha256="06bmlgwyw4m7cirlvhvsl9qhmczv8rv0aj5ckickwzdcxyig9bjw"; depends=[Biobase]; }; + PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.24.0"; sha256="076q31wxfrxbgyhp4m0d7rxfpi3vvh9950lhcadf92mz6rc39hi0"; depends=[CAMERA LOBSTAHS xcms]; }; + QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.28.0"; sha256="0mszcm31wvzz4sd9909x3ngbd0gdg7iyyxqwmn6ish8f3aj7b5zg"; depends=[QDNAseq]; }; + QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.28.0"; sha256="19i559hx0lbn3m0ihx4wxl8zwskbfwhyzywl8aan165f7snj8has"; depends=[QDNAseq]; }; + QUBICdata = derive2 { name="QUBICdata"; version="1.26.0"; sha256="1ibffdqc2szj48g6a9ysqwr499bfx706ki0436jwcyxgql2rwbi3"; depends=[]; }; + RGMQLlib = derive2 { name="RGMQLlib"; version="1.18.0"; sha256="0jsmqibzlclxg4sa73wk63z9l798g1hjl1amjpjy1xb1mn585bhc"; depends=[]; }; + RITANdata = derive2 { name="RITANdata"; version="1.22.0"; sha256="0wx5i8i5aq6zqrr134fl42a0a97zgrjkmwqh3n2ds5bdn5iylk4g"; depends=[]; }; + RLHub = derive2 { name="RLHub"; version="1.4.0"; sha256="1gdlg3sfpf2dpkxiaq0m2mmkpyj7v3jqb9paq6ii89l0df2rmrlb"; depends=[AnnotationHub ExperimentHub]; }; + RMassBankData = derive2 { name="RMassBankData"; version="1.36.0"; sha256="0hkg0w2d8r2r661a7jrpki79ycxnibqwghra4aql9dxqvwrz5qxi"; depends=[]; }; + RNASeqRData = derive2 { name="RNASeqRData"; version="1.16.0"; sha256="17c5fvyqxdsg7wl0hy0i28z0kf2lmjg36lfrmsv51kzklsc6ykrp"; depends=[]; }; + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.36.0"; sha256="1fpcaqvffb4qrcqs1flvhjggycdxcy93jbj3x5196kz4h9i23fvk"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; + RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.12.0"; sha256="1qb753pa6vz4m98s5bqjan70ygqdg4v8jkz440hdq20m2fl54k8w"; depends=[ExperimentHub ExperimentHubData]; }; + RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.36.0"; sha256="1w1af68xbpwqmpvvsd1i7jhs4vpxsbn3x277dgg7lgf9gwzsac50"; depends=[]; }; + RRBSdata = derive2 { name="RRBSdata"; version="1.18.0"; sha256="02j98pnn8pprrx7y1038w5gzb9cw2wf96vryjp17w92k5shv0v5j"; depends=[BiSeq]; }; + RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.26.0"; sha256="0va9ijh2f10c24z0am0rhsdxy0s35cmbsyxfrsysdn56vlz4hprl"; depends=[RTCGA]; }; + RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.26.0"; sha256="0ha4pz9a85jm74yhp5hylgcs3xkcv81b3h5svcrpzwgz4bb34cny"; depends=[RTCGA]; }; + RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.26.0"; sha256="1h0438li369ziwdjvdvyzfnsxrp8sf28xxkxywivy8ihkcq28pxy"; depends=[RTCGA]; }; + RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.28.0"; sha256="03qp4h7vks5dra741f795i5pjryh5x2313xx7zy7fz996sd1q7q7"; depends=[RTCGA]; }; + RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.26.0"; sha256="1srd8aswa4sgm9k1w0ymd7vcvwlkhb8i075yyh7zs4a4w1jwavh4"; depends=[RTCGA]; }; + RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.26.0"; sha256="0ncgzr3z0yi613ryz2w8lgmyrkzigzfgc6w6jrdgxik3yvkl6b13"; depends=[RTCGA]; }; + RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.26.0"; sha256="0rslg5pmnk5dllvahfjrira8mxg7pfaimnqci3jsi78qqb7wdgfi"; depends=[RTCGA]; }; + RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.28.0"; sha256="089zy9bmwmwmihldgcw423sngjwq0vrx7bazrm3xl2psvcfday0g"; depends=[RTCGA]; }; + RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.28.0"; sha256="0q5k6g944xzlhivwzni7azw44rvahz7hgc9bkbbx17dpgz0nkl6y"; depends=[RTCGA]; }; + RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.18.0"; sha256="0l7cv7za7jknwa3jw3110jba31hmsf5wf0sys5kbg1jgkvv0g7ci"; depends=[Biobase]; }; + RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.18.0"; sha256="1qld3cm8qhfxh7p5j0g2iq6i1bxcyhs88222sqyjqjl6i0z01wdf"; depends=[data_table]; }; + ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.12.0"; sha256="1vm6s3n4v4ar3znlg4qlsllddp24wamz53qnmf6ay09wq0wyy9yv"; depends=[edgeR limma ReactomeGSA Seurat]; }; + RegParallel = derive2 { name="RegParallel"; version="1.16.0"; sha256="04qrk7x5b3g4r2j63w0cc2qbxqcljfkjv4qrdg0qmbn3p4gi5nqv"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; + RforProteomics = derive2 { name="RforProteomics"; version="1.35.1"; sha256="1igdx4idgk1j0mcs8zjzd6bppj4nadryxhw2q026hazx6kj5qbxh"; depends=[BiocManager biocViews MSnbase R_utils]; }; + RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.30.0"; sha256="00aymammhqndzwfrb1c9lkpzsia20jqx7pysl3s80nbxga7rc2nj"; depends=[GenomicRanges]; }; + RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.30.0"; sha256="0fayz3kp02lshc42r27jwa7qd8yq6qb5g0kp1lbak062l8mzzjdp"; depends=[GenomicRanges]; }; + RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.6.0"; sha256="0wd55fkdjl1kdchadkd6npz7fmpbacs8mz9phnw7l12nn2qd4mdn"; depends=[GenomicRanges]; }; + RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.30.0"; sha256="17s3dpwhdv24fzk1x7ppyj63rg4rajz564dqplga9445rjb00dzd"; depends=[GenomicRanges]; }; + RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.30.0"; sha256="149i8l5fv0c2z467bacq8lr7ff5jibd2zxxw1p7icbq4k31bcap9"; depends=[GenomicRanges]; }; + RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.30.0"; sha256="07zpwv4s8idgmjy87bpvjq0f0zvgmra7g31kghilslxiq5ywydw8"; depends=[edgeR]; }; + SBGNview_data = derive2 { name="SBGNview.data"; version="1.12.0"; sha256="1a541w5xik81ln571dg3r4iiwprk4xzl95diqqxq2qyivvj6v66w"; depends=[bookdown knitr rmarkdown]; }; + SCATEData = derive2 { name="SCATEData"; version="1.8.0"; sha256="05q33yxj99g0xbha3a7qibpcp33y98p6242lsl3my6p48fby7rh7"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; + SCLCBam = derive2 { name="SCLCBam"; version="1.30.0"; sha256="0969p97x5w7vwaq51bjcdclz40k9yphlr66l92rnvcl3wqbvrs0i"; depends=[]; }; + SFEData = derive2 { name="SFEData"; version="1.0.2"; sha256="1kan3yii88rz9bb3rqgrcvc30pkvrjywhwfax7q51rsz71wvb52i"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; + SNAData = derive2 { name="SNAData"; version="1.44.0"; sha256="133d7ky4sv7msyxxqja6rnf66c1yphx7zh0xzjf6gni4r09a7jp9"; depends=[graph]; }; + SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.34.0"; sha256="02an8d31yd7ryvpy2ldlf52gsyql1waz0qh8d3xsx96p9cg9il2y"; depends=[]; }; + SNPhoodData = derive2 { name="SNPhoodData"; version="1.28.0"; sha256="0668whnkan61jxxi9iykaz1ny0929vnbhb27p7qngc5m92l1zja9"; depends=[]; }; + STexampleData = derive2 { name="STexampleData"; version="1.6.0"; sha256="0mmc41px0yz7mij6gdnjcf8vifwk8p03jy7b5lvylfggbfng579z"; depends=[ExperimentHub SpatialExperiment]; }; + SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.30.0"; sha256="1rjkm6sdhwn4nhswqv5jhlqz4002grslz97lcp5k9i5bsl9yy5lf"; depends=[]; }; + SimBenchData = derive2 { name="SimBenchData"; version="1.6.0"; sha256="0jb82fb9mqiqh9b4nn2cryylzgk5g9yibcyin8wydmv4sk8xxm5w"; depends=[ExperimentHub S4Vectors]; }; + Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.26.0"; sha256="1r4sal6cv91lp4sjxqqg291x1jv16iq0wi34wm0r0mjnfycw6x6n"; depends=[]; }; + SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.10.0"; sha256="0mjy130147sg1jp45niydrsinnxn6i9v4jjmlanwyf1kghl4hx7y"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.6.0"; sha256="0mq5y03yzpxdhhlws9y3g9mz0kr3q3g38a566cvp18mmhxp3414k"; depends=[ExperimentHub]; }; + SomatiCAData = derive2 { name="SomatiCAData"; version="1.36.0"; sha256="1sshapw93rbiqn9i3rg3xls7836hvg87qsl7awp17gzqlqap4331"; depends=[]; }; + SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.34.0"; sha256="1zahhn2b10187hbljp9nppvr94iz067yasfgxalkhkxl09pdpksx"; depends=[GenomicRanges IRanges S4Vectors]; }; + SpikeIn = derive2 { name="SpikeIn"; version="1.40.0"; sha256="0r0lgzr0wrfvhl4fs4w5qcj0ykmngfrn341jgrxh13wn1cdk9yk9"; depends=[affy]; }; + SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.38.0"; sha256="0546mwyacdhcgglfgqkq2c02nzvq1a8pkybggnlvyz1bhrrg51ay"; depends=[affy Biobase]; }; + TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.34.0"; sha256="0na9f3i33h33xpbybgmxwf00mdvyvmgyfvpbj813wcrlp0m2zzhm"; depends=[Rsamtools xtable]; }; + TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.34.0"; sha256="19y43lxmzhly8q3xszlkz7l5v76agyflcjvz0z7bliri1hpxx6bk"; depends=[]; }; + TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.22.0"; sha256="02w9blh9igpflvjmfcxmnw5czjjlmh92ks1y0jhx72fz5g13mq3a"; depends=[SummarizedExperiment]; }; + TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.18.0"; sha256="0q1h4z1x47x5y618j4z2zp4lfhm85s0240nmzi8l8129sqfmb9m5"; depends=[]; }; + TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.18.0"; sha256="14qxsi6mn83c02mhvzs2qss59a8ld1vc94kmy03c9l3p5jcb9352"; depends=[Biobase]; }; + TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.18.0"; sha256="0fx3vxyc89gr2k3wnx5wlqxi6ml45hyijwbf5f7crijzh6avwhbh"; depends=[Biobase]; }; + TENxBUSData = derive2 { name="TENxBUSData"; version="1.12.0"; sha256="0zqsnw0ppmh8f6x8j8ldpfza9308lspasgzbm1qw3cqa5sf2620w"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; + TENxBrainData = derive2 { name="TENxBrainData"; version="1.18.0"; sha256="1mk1vjqqnpc83x5m0js3j59vxi43yp4wrzj6yrrx7rn10xz26x03"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.16.0"; sha256="0551izai1apxs4xz9rd0f12dpbjk2qr0sz8bb69h4rxrbp2jg7r6"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.6.0"; sha256="0z31bqcw2mjqx1vv34z55zcy2s2xnzj1h53j4nmxbwfncj40b9sm"; depends=[ExperimentHub SpatialExperiment]; }; + TMExplorer = derive2 { name="TMExplorer"; version="1.8.0"; sha256="13prp9ksh3k5w84bbvk731fda1psb45mi56dwd9n958rj27mwkgb"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; + TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.16.0"; sha256="0yy9bl3qqcyp8pw4afx90nn0z1zw070qhanwdlim0c4fg5p6g02l"; depends=[ExperimentHub]; }; + TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.4.0"; sha256="1xmim64br8zx57l50ip7sbyjfdwhlr8j29gzf00i610dmksb2sii"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; + TargetScoreData = derive2 { name="TargetScoreData"; version="1.34.0"; sha256="0n7lr3qvppy9pbvff66mk5dc9399afac7f3kn3xkfzpcfjc27b1z"; depends=[]; }; + TargetSearchData = derive2 { name="TargetSearchData"; version="1.36.0"; sha256="0dwsq9cclzxp7f6lhg22cs62gm60pgwx0w9z3h13zvign43ha8r1"; depends=[]; }; + TimerQuant = derive2 { name="TimerQuant"; version="1.28.0"; sha256="0b2vh4xcns8ypmjig42zggws7pffclic57sl7w1cdmynpmn4jr33"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; + VariantToolsData = derive2 { name="VariantToolsData"; version="1.22.0"; sha256="13hgmciikp246nwp0wk4528fad4ccmc587x8s45zg9ybi3ya00iw"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; + VectraPolarisData = derive2 { name="VectraPolarisData"; version="1.2.0"; sha256="0gl92bypw6axdwj83dxmvib7p72dl1n5vqfrsy398fahx24djwln"; depends=[ExperimentHub SpatialExperiment]; }; + WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.30.0"; sha256="0yi72kdihvrxf7w72fn24bs5r89pg10kc9myl8n4nmf2iiplcn0c"; depends=[]; }; + WGSmapp = derive2 { name="WGSmapp"; version="1.10.0"; sha256="0lgfmpmnwpmrg05nz8vxlkz3jwy6gkd74fl7a2f81bh2lrs4bgh1"; depends=[GenomicRanges]; }; + WeberDivechaLCdata = derive2 { name="WeberDivechaLCdata"; version="1.0.0"; sha256="1zqc26n7945b024ln82yqp5zpsmb7d5bi8zgj8hqnm09bna3qiil"; depends=[ExperimentHub SingleCellExperiment SpatialExperiment]; }; + XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.36.0"; sha256="1r09wr45vjcr7yxxfi5l132bqg380bicdlz699961hbinvyg7pgc"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; + adductData = derive2 { name="adductData"; version="1.14.0"; sha256="0yfgjvq7qk5gvdjhrh2lyz77c6jd438ykd2mpfm6643zr2bkxp4g"; depends=[AnnotationHub ExperimentHub]; }; + affycompData = derive2 { name="affycompData"; version="1.36.0"; sha256="0qcjlm2i0z8z6ab7dknwl1pdmxv69hyfpj61lhygn8ks02al12kn"; depends=[affycomp Biobase]; }; + affydata = derive2 { name="affydata"; version="1.46.0"; sha256="1k2npkq41ik7c1cniz22vm9970ylrc3cjfr38iy5x5zmh8i35ypn"; depends=[affy]; }; + airway = derive2 { name="airway"; version="1.18.0"; sha256="0l706h1flvv4zz82w3qyj73g28cw094vsx4iq7ahhh0vyyxg9bjx"; depends=[SummarizedExperiment]; }; + alpineData = derive2 { name="alpineData"; version="1.24.0"; sha256="00r7ks6rgiwhqsayhv6l9z7i65jxgdvlj73r2mx6c04fg0nqp3y8"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; + antiProfilesData = derive2 { name="antiProfilesData"; version="1.34.0"; sha256="0kxya21ycp8fwkqbiziggf3k5y2d344qr1bk0yvncgjf7qvydfrb"; depends=[Biobase]; }; + aracne_networks = derive2 { name="aracne.networks"; version="1.24.0"; sha256="1hynz34hjc49vb2di23zs921p2k0cy3b923s20g7ajfz827cpjsd"; depends=[viper]; }; + bcellViper = derive2 { name="bcellViper"; version="1.34.0"; sha256="1fpgh70x2r68v0ximgcdphnyzq2hgiwbamyhbac3yka8flhrd1fm"; depends=[Biobase]; }; + beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.36.0"; sha256="15fmqxlp28j4mrbkg9fjk35ki8s15xn9kbh928cni2722b5pvxml"; depends=[beadarray Biobase]; }; + benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.12.0"; sha256="1zhxd4y7d4j34cpvrhidz2rqd4n7ngj7wpk1klpfn3kdrsm7s4my"; depends=[ExperimentHub SummarizedExperiment]; }; + beta7 = derive2 { name="beta7"; version="1.36.0"; sha256="13g2n1nywj5pd1pvhvwqqyc8q7vzxnlm9345ivfk0vnvafdvadmr"; depends=[marray]; }; + biotmleData = derive2 { name="biotmleData"; version="1.22.0"; sha256="0vizblf5sv5mj9j5w3wy48pv75c97bf4lcxd0fsz73lcfz446ja4"; depends=[]; }; + biscuiteerData = derive2 { name="biscuiteerData"; version="1.12.0"; sha256="0a2sk4f7lxllja3pbawd5apkcvlh2flw6xa69vn71860fi9k831v"; depends=[AnnotationHub curl ExperimentHub]; }; + bladderbatch = derive2 { name="bladderbatch"; version="1.36.0"; sha256="13zgwh3g6iy4pdq8w5wx5nmzh4ypc17d6apm9c1mv3y4xaya7i1h"; depends=[Biobase]; }; + blimaTestingData = derive2 { name="blimaTestingData"; version="1.18.0"; sha256="0wyvskjn3kfqlnfll36c86cb9gxj4vj194mvpy2p8mbmarhpb2qr"; depends=[]; }; + bodymapRat = derive2 { name="bodymapRat"; version="1.14.0"; sha256="1jfa3i1d1llhqqa5pxbj7raj09sw4j7ayclnr5325n49cblvrgln"; depends=[ExperimentHub SummarizedExperiment]; }; + breakpointRdata = derive2 { name="breakpointRdata"; version="1.16.0"; sha256="0f23i4ynb4vgn22c3d2l64z92rzv3qnwd4j8qyvalklrxkwilhfn"; depends=[]; }; + breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.36.0"; sha256="0rfcycjl3jz3fgx7h46hi40gppq640c0mdyf6nh42zc34ml49cml"; depends=[]; }; + breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.36.0"; sha256="11kv9bnbi1p8qlnyayqb7380mwx95a7cd5vljq3zmw74v6723h6k"; depends=[]; }; + breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.36.0"; sha256="1z7p2fgbd80hqqrphw6kr3hasx4ybigd4ilw22i040b8c5zkilfw"; depends=[]; }; + breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.36.0"; sha256="0rdjk0cl0shhfx3jr0cpnh9whhdcnbj6akhipc2c5sk2l7kagiz8"; depends=[]; }; + breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.36.0"; sha256="19bzlxj106ww4ffkgd15fhq4idqvnwa5slbb4f65xf0nnpf11s19"; depends=[]; }; + breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.36.0"; sha256="0kk048gs3ksg163hcscnb1ng3zswqg5mzzyy1jlb6q0rswh4f6zx"; depends=[]; }; + brgedata = derive2 { name="brgedata"; version="1.20.0"; sha256="0brjmgjcpx8ka1idxd4fm6aa1mgw1nbsa99di3j5n65k34dapzmi"; depends=[Biobase SummarizedExperiment]; }; + bronchialIL13 = derive2 { name="bronchialIL13"; version="1.36.0"; sha256="0vj61n1h52y1yhlf32pqvfz7zk77r02j7pxpd6aih8p7yhpna4f0"; depends=[affy]; }; + bsseqData = derive2 { name="bsseqData"; version="0.36.0"; sha256="15qii9mqm05p84m8m2w65rk2hayq354127j33f6dv8zfnyijr1sk"; depends=[bsseq]; }; + cMap2data = derive2 { name="cMap2data"; version="1.34.0"; sha256="10r4dbw76bzhqc2aclksib0nnyzsn59xwazaghq8cm0nbaidddf4"; depends=[]; }; + cancerdata = derive2 { name="cancerdata"; version="1.36.0"; sha256="01cmwqz3h8rbymgws6fsd5rdjiq0k8p9jyl31l5lqck53z1ngxfl"; depends=[Biobase]; }; + ccTutorial = derive2 { name="ccTutorial"; version="1.36.0"; sha256="0c76b68hasc8g452mc3q5w2d2xar8qp8hkpg0n98pyzlm5yddqzd"; depends=[affy Biobase Ringo topGO]; }; + ccdata = derive2 { name="ccdata"; version="1.24.0"; sha256="1gag2w14qb2jialkgwapdkh8l0impa6ni621za9gz08yvgw0m8c3"; depends=[]; }; + celarefData = derive2 { name="celarefData"; version="1.16.0"; sha256="1kblk1dl6ysxlfqb0z5jqcffniafsl786mpvgqw6hjxnjya5vz28"; depends=[]; }; + celldex = derive2 { name="celldex"; version="1.8.0"; sha256="1nn87ig61cy87n7fjz45x13xl7ap1frd2i6pgp2y2wx0lj83hamb"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; + chipenrich_data = derive2 { name="chipenrich.data"; version="2.22.0"; sha256="1rh329i39zc5ip6h7v5pdy8383ak0jdq27zvi2szci450sqrrmp1"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; + chipseqDBData = derive2 { name="chipseqDBData"; version="1.14.0"; sha256="06r2l4z26barr7fa0p7brpm5ds3c234vpbcd54g5chah57n2v420"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; + chromstaRData = derive2 { name="chromstaRData"; version="1.24.0"; sha256="0hip3b4dkkcqvy8n5ac8m1r7qa0hr3apb5a7wm9zi11dyzyin0g0"; depends=[]; }; + clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.8.0"; sha256="01p7qy2svm382v4ykfzndy562dlgrbzzzrf6rfnk6w1j5lhads1r"; depends=[ExperimentHub]; }; + cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.34.0"; sha256="0b08mq034w6xs64f9280ckvdz0g2r7glclpkpwmcw6rw73qi35w3"; depends=[cnvGSA]; }; + colonCA = derive2 { name="colonCA"; version="1.40.0"; sha256="0an3vhj7mbyyzpnpi078wcky8p83lr46dlj6079g13j0azpmf7cr"; depends=[Biobase]; }; + crisprScoreData = derive2 { name="crisprScoreData"; version="1.2.0"; sha256="0b0vkcd30m56cnk1rsincigs66yh5pvlmpzl61hz1iyhc7367bqn"; depends=[AnnotationHub ExperimentHub]; }; + curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.10.0"; sha256="07xaaqrxnyvq0binjyxdn1wy523frynkbql2wzhbhafwq9x02xnj"; depends=[]; }; + curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.14.0"; sha256="0rhcw4wy023g55586hz6zyvzlcb3cfmm0jp3rsa0iq8pbm2r9n6m"; depends=[ExperimentHub SummarizedExperiment]; }; + curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.14.0"; sha256="0mq25yi91hm60ak3mws7wi49hvllirxfzz4kqjxxr493bkdllxkl"; depends=[SummarizedExperiment]; }; + curatedBladderData = derive2 { name="curatedBladderData"; version="1.34.0"; sha256="1vp9w40v37xgjdsg8m0w7580h2i0xi823f34qik87mj1hr5xawsf"; depends=[affy]; }; + curatedBreastData = derive2 { name="curatedBreastData"; version="2.26.0"; sha256="02iflnwfpcmglj060w5zygqccii91n2s0vp9bkl1ppj6g409pxm3"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; + curatedCRCData = derive2 { name="curatedCRCData"; version="2.30.0"; sha256="0hbc3d1sj1mfqszmfgkmhpnkbw4mdapp85s7bj2spmcwf0pcsr0n"; depends=[BiocGenerics nlme]; }; + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.6.0"; sha256="0ry9063nmcc5n289a2h7rpv7dgf25i3yk44nfsslfy73bvrdnz75"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; + curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.36.0"; sha256="09zb3m32a2rqwgs2x6g1ixvwnbx0100mb2m8rkbkdlfczlnq9riq"; depends=[affy BiocGenerics]; }; + curatedTBData = derive2 { name="curatedTBData"; version="1.4.0"; sha256="0ksb30h6hlksxzgp0dl1f09jr4a59zdll9jnla8xcsbqqvbkm4g7"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; + curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.20.0"; sha256="01q3bcspvff2syg5d933iqfxwl62axfy4xbzkwlg15as7bl7a54r"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + davidTiling = derive2 { name="davidTiling"; version="1.38.0"; sha256="1g8q0m03ss7nf2v3rk6db93mmbzy1kc960scs37pc3s9xdm7k9ak"; depends=[Biobase GO_db tilingArray]; }; + depmap = derive2 { name="depmap"; version="1.12.0"; sha256="10y1s5v6c74ynq8m0rck41w16hglnr700c322k5p9yzndf86f3hv"; depends=[AnnotationHub dplyr ExperimentHub]; }; + derfinderData = derive2 { name="derfinderData"; version="2.16.0"; sha256="147bf7x90prw1x58gy6w13l02sf6zbn4888ikw817k9n5ja3f3x1"; depends=[]; }; + diffloopdata = derive2 { name="diffloopdata"; version="1.26.0"; sha256="0kdh2kd0wv324nzi1zwx765hj2fblp02lnyabmyc0xdvinv64vmy"; depends=[]; }; + diggitdata = derive2 { name="diggitdata"; version="1.30.0"; sha256="020v1l8h8xmxk0v5fnbvp769mks71wzdmkqjawjngd7v0jj9zclp"; depends=[Biobase viper]; }; + dorothea = derive2 { name="dorothea"; version="1.10.0"; sha256="05vkb5mash2m8p6njk842sy5pz7vblrm8n9bphqbslm86kld5n92"; depends=[bcellViper dplyr magrittr viper]; }; + dressCheck = derive2 { name="dressCheck"; version="0.36.0"; sha256="0yrnm6i36zrcjri8fispnlk29wbrj5p2ld716qbd3v7i7kh65v2f"; depends=[Biobase]; }; + dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.38.0"; sha256="0f940198kz8i81s3j3sk5kiaradvk6f9g1w7y40kr92y67p0l438"; depends=[GEOquery marray]; }; + easierData = derive2 { name="easierData"; version="1.4.0"; sha256="0w8g2b6d0c97m796nl09s7ls8wzs6ir7947maygi0a9qv20b2n0x"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; + ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.38.0"; sha256="1303yzp75n9ipvvp5avajcs45p0nz6hqisgl2h58baq9qqxgda6z"; depends=[affy ecolicdf]; }; + emtdata = derive2 { name="emtdata"; version="1.6.0"; sha256="182v17zcsfi1k6vmyjg6m9pdmfzg9ljvhdvydgr63zmjhdh3l4p2"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; + epimutacionsData = derive2 { name="epimutacionsData"; version="1.2.0"; sha256="10ihas90rqkfagi95hhvpz6clpwlsclv2vx2sgy4v51mwk71hhps"; depends=[]; }; + estrogen = derive2 { name="estrogen"; version="1.44.0"; sha256="00mw9cvvh28yp3brdm3jyaal3vkkwis8gla4v30glpivb3nd13yq"; depends=[]; }; + etec16s = derive2 { name="etec16s"; version="1.26.0"; sha256="1cbyzvymznf9rsi22psd61vsnf1m64zsq9fwz6yani7h4lr2i1sp"; depends=[Biobase metagenomeSeq]; }; + ewceData = derive2 { name="ewceData"; version="1.6.0"; sha256="15lrlg8yl570cxyqlh2cp7cy6l7n9bcbrz2dn9713q3649r9gh9z"; depends=[ExperimentHub]; }; + faahKO = derive2 { name="faahKO"; version="1.38.0"; sha256="04jc58rzd1ykchhvcg5zvi22gkj26g4a2qm9ciyky9my3mihjz1l"; depends=[xcms]; }; + fabiaData = derive2 { name="fabiaData"; version="1.36.0"; sha256="072hip7xgd55bbjbnnw645hm89cv7821j6m02d360hyi4l17kmbf"; depends=[Biobase]; }; + ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.36.0"; sha256="19fsyxdfaq75r7a7z0p4479afgk8bjbmnw8yh731s826hd5xbcjr"; depends=[lumi]; }; + fibroEset = derive2 { name="fibroEset"; version="1.40.0"; sha256="1bna044rbxmqck6rkq3dyrc3cgvvscpldzv4j7skw55d9vxy495a"; depends=[Biobase]; }; + fission = derive2 { name="fission"; version="1.18.0"; sha256="0lrwkwf56nqzwrn0vs5g8xr5vbb32qrlaif3c86z04jnzkdx3xnj"; depends=[SummarizedExperiment]; }; + flowPloidyData = derive2 { name="flowPloidyData"; version="1.24.0"; sha256="1fqv9hw18aa9rb7mq09d1njl0y8ix2m1njini99w7ivs1c19lcpa"; depends=[]; }; + flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.10.0"; sha256="100r6sjwkbwhw93prqszgnqsgs2i6m10kivzrqwrmk9kbr9ib58z"; depends=[]; }; + frmaExampleData = derive2 { name="frmaExampleData"; version="1.34.0"; sha256="0yxpsgqigv75dwy8hn9yrbxskqalh2wdhvp0iv84fr1m7md5k9pb"; depends=[]; }; + furrowSeg = derive2 { name="furrowSeg"; version="1.26.0"; sha256="1ig42k7xwxpmcn1iairmg3lqvii5jidrm6v62whjpmvafh7sqjvc"; depends=[abind dplyr EBImage locfit tiff]; }; + gageData = derive2 { name="gageData"; version="2.36.0"; sha256="1ikmf894d8bqk3n5yvsm4chvs65hi8drvdwdagkrfqvdrf0pb96s"; depends=[]; }; + gaschYHS = derive2 { name="gaschYHS"; version="1.36.0"; sha256="17mxnym5wqzjgli5rlkwrck5jp9qdhnvmqaqmsz4w1hjdx9raxb7"; depends=[Biobase]; }; + gatingMLData = derive2 { name="gatingMLData"; version="2.38.0"; sha256="1dhm48nrh1y0x6p50045cn6f21bg35i0b4z7bjymn9aw0n9r5fyk"; depends=[]; }; + gcspikelite = derive2 { name="gcspikelite"; version="1.36.0"; sha256="0kyy1pm7582am6rgfr8kbfw1diwb9zpsblgnbjq0c18zb3kg21sn"; depends=[]; }; + geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.34.0"; sha256="1xcnsg1cv1q13bwaqf4dyv05fbxpjg58c338v0nh9sg13nrg174g"; depends=[GenomicFeatures rtracklayer]; }; + genomationData = derive2 { name="genomationData"; version="1.30.0"; sha256="0k3zdpxjzv2nc2v11n0hk7gi8s7v1gjmmqslidqi2y77y1z64rpr"; depends=[]; }; + golubEsets = derive2 { name="golubEsets"; version="1.40.0"; sha256="1n92qi82if1myq6qn7143dn3bz021qf9x9pfq93sjp78gizd8n41"; depends=[Biobase]; }; + gpaExample = derive2 { name="gpaExample"; version="1.10.0"; sha256="0wprivx26a0c0j2yjp74af97019lafg3584i2ik3pbq9kn9qsnk6"; depends=[]; }; + grndata = derive2 { name="grndata"; version="1.30.0"; sha256="1wwhkjhnpn5qyvnk2a2x347gry834bk98ri62qgkn48i7bxdl4nn"; depends=[]; }; + h5vcData = derive2 { name="h5vcData"; version="2.18.0"; sha256="0im0wp751zqf46hvv99pmy7qz0j2hlr8mqyxljf8m0aydrhdd1c0"; depends=[]; }; + hapmap100khind = derive2 { name="hapmap100khind"; version="1.40.0"; sha256="1d0q84lz3a47znd7w3hjcml9awvkn4qaqk0zlxibifzzbqyh17ci"; depends=[]; }; + hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.40.0"; sha256="0lb36nhdj4vq7d87niwxllmyql0k283mxj41amcf7wr5i1lkx8bq"; depends=[]; }; + hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.40.0"; sha256="0bfsa6niqrvz4krwc8lgidx57n311lvnxdfajzxg0icinlji4nkc"; depends=[]; }; + hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.40.0"; sha256="0b3jmbf3brqd8w4f7ryzxkgis0g36ckr390gl2hw5llvsz01kr4v"; depends=[]; }; + hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.40.0"; sha256="1w0j2zgw5xd6ni13vgi61i4zikpf62h6miq8cfhqc6i9frb5h3an"; depends=[]; }; + hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.40.0"; sha256="1ngb3rwdz6891hlvy4qblj0p04l5hgcvj60yb1nfccbmg9389phc"; depends=[]; }; + harbChIP = derive2 { name="harbChIP"; version="1.36.0"; sha256="0dj0nmsqmp8wlhjisjj1dwiyspjkkk2jlb9qkp6p9c2brbbpzyc0"; depends=[Biobase Biostrings IRanges]; }; + healthyControlsPresenceChecker = derive2 { name="healthyControlsPresenceChecker"; version="1.2.0"; sha256="1a9i2qyhz5gf98096hll7q8mwzidff8jrnclw2z1s4w3wjmv1f8q"; depends=[geneExpressionFromGEO GEOquery magrittr xml2]; }; + healthyFlowData = derive2 { name="healthyFlowData"; version="1.36.0"; sha256="1s581y2z33420cjjmr05l0hsnrgiy3ifn7mhhndplsmfy9q36kji"; depends=[flowCore]; }; + hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.36.0"; sha256="0q5dlsndx9b77wndai51dk2mv6fw7qkixhq9vxrsvy7yapflc68b"; depends=[]; }; + hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.18.0"; sha256="0vx2gfxbk3fr4xcicwblrm1lcnmmnljpv97zrzlgyqmx5clj13jm"; depends=[Biobase]; }; + hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.36.0"; sha256="167wfkp7w6ly6mzmdjg7lq2r2dyp8f6fpy3nfg2r9yli76gmx59v"; depends=[]; }; + hgu2beta7 = derive2 { name="hgu2beta7"; version="1.38.0"; sha256="0n2g88j7rpqabb6gkq8gy0iml1dikkdknkkhzqaz79cmvj28iiy2"; depends=[]; }; + humanStemCell = derive2 { name="humanStemCell"; version="0.38.0"; sha256="1s5jlh5xiw5hgnk3x2c6y6rb5gjmbnc8mglih8kc10y9agghj2rv"; depends=[Biobase hgu133plus2_db]; }; + imcdatasets = derive2 { name="imcdatasets"; version="1.6.0"; sha256="0n0bk4kh8d7sr5c8w953d6ns17ylzjq5dic4rh953l197pdsihfc"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment SpatialExperiment]; }; + kidpack = derive2 { name="kidpack"; version="1.40.0"; sha256="10padi12jp5all6bpi2wp5wsx5cn7nxp100kcf9bm3rxkaqccfiq"; depends=[Biobase]; }; + leeBamViews = derive2 { name="leeBamViews"; version="1.34.0"; sha256="0p0mcwyhf052fviggi5vmg1xb8h1inp0vg4i0dqvqbh2w85fg3wp"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; + leukemiasEset = derive2 { name="leukemiasEset"; version="1.34.0"; sha256="0l23s68hdjj2pj3wfv8vzag6lbsd3py2463b2rgb084b4cnsc07b"; depends=[Biobase]; }; + lumiBarnes = derive2 { name="lumiBarnes"; version="1.38.0"; sha256="00bc1s583mkj9iqn64mgz3h64kj5dnq1b9lwgz73cn9zhgzll9lx"; depends=[Biobase lumi]; }; + lungExpression = derive2 { name="lungExpression"; version="0.36.0"; sha256="0pksq9gi0vahg10lnr81nacn5rlb6i3z495ymm7vqiiygc4mx81m"; depends=[Biobase]; }; + lydata = derive2 { name="lydata"; version="1.24.0"; sha256="031g2hzmrbf83ac4inn9670nn055axr60hiv9cj8jkjnwpi938sj"; depends=[]; }; + mAPKLData = derive2 { name="mAPKLData"; version="1.30.0"; sha256="01bd8zcxnncfkfdlli7ay4v8rh2wkhh6gidk7442qw86x7d1dxbx"; depends=[]; }; + mCSEAdata = derive2 { name="mCSEAdata"; version="1.18.0"; sha256="1bxnczhvmgf1ilff91h9g2kzk6i76l42gh2gfapjlkhd3g2wl31z"; depends=[]; }; + macrophage = derive2 { name="macrophage"; version="1.14.0"; sha256="1dwq7agr98pqv5f910kz8z4szscsrl15j4f4zakv8m1ajkyz53h2"; depends=[]; }; + mammaPrintData = derive2 { name="mammaPrintData"; version="1.34.0"; sha256="0bpm2w3p97sp0jwmqmzs2h4pizfj7x742pnnib5rbvlmc59ypwc0"; depends=[]; }; + maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.42.0"; sha256="0j8ikjbcpd703gpzxi7lx4hmsrh0p1vxz222vnw352imd2bxi58v"; depends=[]; }; + mcsurvdata = derive2 { name="mcsurvdata"; version="1.16.0"; sha256="1wbwf365wsd931y4a0vyif02svl16rx2rglxkw93i7cdkblpjr28"; depends=[AnnotationHub Biobase ExperimentHub]; }; + metaMSdata = derive2 { name="metaMSdata"; version="1.34.0"; sha256="0hw8kaysnw6kf524vmrkkzkins1r8a9w6a1x4k7zq1hklfvwb72x"; depends=[]; }; + methylclockData = derive2 { name="methylclockData"; version="1.6.0"; sha256="1ip9n0329d3wx4q9a4xpng6lzrls3yx93c0z9m0j2q1jsb8bwaxa"; depends=[ExperimentHub ExperimentHubData]; }; + miRNATarget = derive2 { name="miRNATarget"; version="1.36.0"; sha256="1ln3vz92ci3m8p165c33j2p6zxzgibmca9mdph1k1cc1mnp64jh2"; depends=[Biobase]; }; + miRcompData = derive2 { name="miRcompData"; version="1.28.0"; sha256="1gz7bnis42vmkx5h31nvrfy7gnvypb08sh5ayblfzfcva1mx14dp"; depends=[]; }; + microRNAome = derive2 { name="microRNAome"; version="1.20.0"; sha256="0hxwnhlvkhgjxljzmkjs94r3d1w4da8g2chryqyllsklhzs0g0ki"; depends=[SummarizedExperiment]; }; + microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.6.0"; sha256="15y39w53yn9jzm682fhq7cf971pcg78hn1xbdha7aavdnd4032vj"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + minfiData = derive2 { name="minfiData"; version="0.44.0"; sha256="15s3kc629m2c78vkidmp6kcc28sn1wzjzrxazmd8z7x8cdad3q4g"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; + minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.24.0"; sha256="03kfxq5fq66y6z1aliyxam6dgxmr4asmxvqfzla8br5rpd1sa8qc"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; + minionSummaryData = derive2 { name="minionSummaryData"; version="1.28.0"; sha256="0cqchzvdk13y80xsxnkaxd4x6c14d6wmc0vml3i8mzdqfh2d5bz1"; depends=[]; }; + mosaicsExample = derive2 { name="mosaicsExample"; version="1.36.0"; sha256="1p1acg1gwc1xb7g66bikvcdjix007i5l9vi8r4qjm28h78iij1rj"; depends=[]; }; + mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.36.0"; sha256="0bdsfnb7qmazshzy2ww8vp2n3m0x27v65z94gw5bi6bnrmakl040"; depends=[]; }; + msPurityData = derive2 { name="msPurityData"; version="1.26.0"; sha256="07zjdbi5nyp2yq9x37wk4yg24s3c5l8gw1r91x0pb93kb52i5p1v"; depends=[]; }; + msd16s = derive2 { name="msd16s"; version="1.18.0"; sha256="0glsh139jn0by93f52850y5nbh14wbapc0qmr8ib7ql7y25q0l16"; depends=[Biobase metagenomeSeq]; }; + msdata = derive2 { name="msdata"; version="0.38.0"; sha256="0rrmf8dygql6pisac18khjk4fn2zk2wn6f9j2x3y4z5345s0a0hn"; depends=[]; }; + msigdb = derive2 { name="msigdb"; version="1.6.0"; sha256="01pxk4hs8zd89ck1q7h0apd4ypy7v7y9k4xx6rqd80wzn5bkc8rc"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; + msqc1 = derive2 { name="msqc1"; version="1.26.0"; sha256="15idd0dl3q3707ircfvylh5q12ndpa38fk5cwba59732092pc866"; depends=[lattice]; }; + mtbls2 = derive2 { name="mtbls2"; version="1.28.0"; sha256="0nd4zb7lr4v5fcms3qx8zhy72gwg41kk6x2b1q68hajf8dww6r9x"; depends=[]; }; + muscData = derive2 { name="muscData"; version="1.12.0"; sha256="062xiaaka1k1raq5mhmr1wxwb755ws0n00dki1zsj2kl4l4lca2f"; depends=[ExperimentHub SingleCellExperiment]; }; + mvoutData = derive2 { name="mvoutData"; version="1.34.0"; sha256="0lybg4whmlr8d7glmlnz981n3cg5ypmj2w7pdkxwphmm0l0bchq5"; depends=[affy Biobase lumi]; }; + nanotubes = derive2 { name="nanotubes"; version="1.14.0"; sha256="05i7yrmibbv4wgdnmlagmpnxzsv8hiqnf5w3cbpm3xvchmi3zzvx"; depends=[]; }; + nullrangesData = derive2 { name="nullrangesData"; version="1.4.0"; sha256="1991pdj4mwaryli85kn3v8lj367l9yqym6j5swmjmpgvszrk6b1h"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; + oct4 = derive2 { name="oct4"; version="1.14.0"; sha256="1dzwbqwm10zhn1qr1r7d704jhm2knhccmy1zywgsr1y6fizwl6rv"; depends=[]; }; + octad_db = derive2 { name="octad.db"; version="1.0.0"; sha256="09wzmy23x1b1dc40a522kxw8ry2migs22h15bfzl10l8mxryibhf"; depends=[ExperimentHub]; }; + optimalFlowData = derive2 { name="optimalFlowData"; version="1.10.0"; sha256="123wfjjv8pcx4xjaggmcndmsdcsdx4jr9rj97wlzwf6f7inxq282"; depends=[]; }; + pRolocdata = derive2 { name="pRolocdata"; version="1.36.0"; sha256="0q1fi4msl2xyx3cgknwmfp9hlgqk46y68znrq0knnsz6fkl4n9qa"; depends=[Biobase MSnbase]; }; + parathyroidSE = derive2 { name="parathyroidSE"; version="1.36.0"; sha256="1yk7cyhsdj1zp87ggng8mciagp8kpkrnrv5qa9w1i8ap3dwvxrs8"; depends=[SummarizedExperiment]; }; + pasilla = derive2 { name="pasilla"; version="1.26.0"; sha256="0xi2f37v0ds6ivzgx53mfb2isvz8npn8wmdczg88ym6b77g6a3ki"; depends=[DEXSeq]; }; + pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.36.0"; sha256="072gqidg42235zfx8qqd8sv7kigrkagkkw4i3nj5sbxzqb1f8vvs"; depends=[]; }; + pcxnData = derive2 { name="pcxnData"; version="2.20.0"; sha256="1ga9azlwx6qfr1f452k80bg2kfkwf18mjk39plq0yjzisrj1jy5m"; depends=[]; }; + pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.36.0"; sha256="13c9f1hwfngkp3d4ljcm5xjlr6r6fsiyb06b18q3b8kp5wya9lp2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pepDat = derive2 { name="pepDat"; version="1.18.0"; sha256="1cirzkhi76jjqf0cgbb3hq69ykkivpxl0nf52x3vi3wp67ai3x0p"; depends=[GenomicRanges]; }; + plasFIA = derive2 { name="plasFIA"; version="1.26.0"; sha256="0vbqjbfc75pb2gk49sl6aihmvcc38ylngyr1bgdvdxr0xh11imv0"; depends=[proFIA]; }; + plotgardenerData = derive2 { name="plotgardenerData"; version="1.4.0"; sha256="0zpsjr3q3jgd07091i78x4izcqaxk1dqyfanmy2z08xd313mqniq"; depends=[]; }; + prebsdata = derive2 { name="prebsdata"; version="1.34.0"; sha256="1qgd3bmlm2bcqyfsdhfnms6q1bsdi7k0pn9yd9lfwzd3yj9lns1m"; depends=[]; }; + preciseTADhub = derive2 { name="preciseTADhub"; version="1.6.0"; sha256="0hs04i0l0wsdcg9k2j2gbdfmi2cd05gmncjw8vbpiqc5170lcxnp"; depends=[ExperimentHub]; }; + prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.26.0"; sha256="1z2s8z98a3zbj9wjzwgma3pbl0z2bjkqv3lgslay3l8b7xb1pw2r"; depends=[Biobase]; }; + prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.26.0"; sha256="008d32f1wva5n75cdz4lf0pcm0bszjc0qklc69mxq64riq1z410h"; depends=[Biobase]; }; + prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.26.0"; sha256="12hndm71gqicmkll47dc9blxq650k20bny7dgckg4jx1ck5j8dmr"; depends=[Biobase]; }; + prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.26.0"; sha256="07k18cx9i0ca29hf00dfmqp3qbqdlh10hfx4kwn4q42ixj57hkf4"; depends=[Biobase]; }; + prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.26.0"; sha256="0bg8jdvqhrh6qyyp5jsrsv09wzixsxkwfx7j1g7jz5w4zh3z35rx"; depends=[Biobase]; }; + ptairData = derive2 { name="ptairData"; version="1.6.0"; sha256="16x9c6gp7mg8hiw9hv49nmx41hd5sxxhyblf2jq8gf1aydvmfpij"; depends=[rhdf5 signal]; }; + pumadata = derive2 { name="pumadata"; version="2.34.0"; sha256="1pc7jmx5qh3zj5wk7kjfzlbq2cipw0943fw5ykqivvlinlg7f57y"; depends=[Biobase oligo puma]; }; + pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.12.0"; sha256="1icq59yifsaxifxl29pxx97vrl27cfkwqziz9cpcbc3lqfp8iqmj"; depends=[ExperimentHub]; }; + qPLEXdata = derive2 { name="qPLEXdata"; version="1.16.0"; sha256="177gin4y9jb7188myan5h847yzanwgfwjiwrdz2bd2iskbygbsq3"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; + rRDPData = derive2 { name="rRDPData"; version="1.18.0"; sha256="16p33xyp8pw2sx2bq4fhlxlmrlfy0b6zqpnf1f0dy1857nll6kp4"; depends=[rRDP]; }; + rcellminerData = derive2 { name="rcellminerData"; version="2.20.0"; sha256="1imqc82pfmxpiscajslzw6fyy8qplabmyq6745p963pjh7kqk7qb"; depends=[Biobase]; }; + restfulSEData = derive2 { name="restfulSEData"; version="1.20.0"; sha256="1j3ix1900mckca70n4qjzaw44mwzqfbvc5nb0ww23b5ihbly0gls"; depends=[DelayedArray ExperimentHub HDF5Array SummarizedExperiment]; }; + rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.36.0"; sha256="1ks94mcjvr6fm9ww2h2ll9kcnmm0skycj58z6g5g98182nximy65"; depends=[]; }; + sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.22.0"; sha256="0ysf3mssn9mpkpcy1p4m93h7fc4finb8gnv73046bwmzc3nlysj8"; depends=[SummarizedExperiment]; }; + scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.4.0"; sha256="0nkr32jm772ksrc8yns1j4nbc4sc83hcw4v6l6imwm845dv8n4kz"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; + scRNAseq = derive2 { name="scRNAseq"; version="2.12.0"; sha256="1kzsd2armxy4b8q574qc6wzjnf668y8zdp9mkqjnigsvfxnw65zb"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scTHI_data = derive2 { name="scTHI.data"; version="1.10.0"; sha256="0a46f981h3b99qpys48845cy5a75bv07w64bbmzn9kxy12njdbwf"; depends=[]; }; + scanMiRData = derive2 { name="scanMiRData"; version="1.4.0"; sha256="0ijb1m2fcvg02zhw8nxvbidl5j422p1szqii5xaqxwy7jq3hygdk"; depends=[scanMiR]; }; + scpdata = derive2 { name="scpdata"; version="1.6.0"; sha256="0kmymij0zm9sramba3nmg88ci6dvypcf36lh9bmshn692cp0ga4s"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; + seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.30.0"; sha256="058fi3p0kmvk7p7j81jgcysw17ws0ppnsfkxljp01w111aqlfgf2"; depends=[]; }; + seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.34.0"; sha256="16giir805vrqgfvvkrivh9jzd7kbblk3yk9ykqczsn6fjrmkbbac"; depends=[]; }; + seqc = derive2 { name="seqc"; version="1.32.0"; sha256="1iz5d3snnk1zqiz90m3m29138wwh9zpv6lqqff1bphir0sn3dhk1"; depends=[Biobase]; }; + serumStimulation = derive2 { name="serumStimulation"; version="1.34.0"; sha256="1x2ipkpgw8ln8n7s5naiw69vqk7jdqvbpvc3551i3fiph8dp5j7c"; depends=[]; }; + sesameData = derive2 { name="sesameData"; version="1.16.0"; sha256="1a5aq0lzs5w2zrvdm3fwg34rx36ypzpzwhyrw2w1kfpdpnb41gpz"; depends=[AnnotationHub ExperimentHub GenomeInfoDb GenomicRanges IRanges readr S4Vectors stringr]; }; + seventyGeneData = derive2 { name="seventyGeneData"; version="1.34.0"; sha256="08xfx7y42y7zhy7j5qjsvzgy71fi6zdzsnz8zidsrjqbvky5j0bw"; depends=[]; }; + shinyMethylData = derive2 { name="shinyMethylData"; version="1.18.0"; sha256="1bwqfg29dghnr6d3ds4cj48w7azrmi0ichlvbpbvi4p5p0v06p4c"; depends=[]; }; + signatureSearchData = derive2 { name="signatureSearchData"; version="1.12.0"; sha256="0s4pcfnkks8bw9igj5nx3b21zpyj3zzl4dy71wc5zfb9xdzbrkbg"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; }; + simpIntLists = derive2 { name="simpIntLists"; version="1.34.0"; sha256="02613cn3rix33pybf6da78yi76ccswr69mkcvhfx0h78hpgk9qy2"; depends=[]; }; + spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.4.0"; sha256="15ajjp19kfnfdddsrsgdkwa28f296xpb7jza51cnyix34n1xzrhi"; depends=[ExperimentHub SummarizedExperiment]; }; + spatialLIBD = derive2 { name="spatialLIBD"; version="1.10.1"; sha256="0p88kl1l59iy0hs2jm4xg100lgnplzak6imq9pqirgnp0j5py4db"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT edgeR ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite limma magick Matrix paletteer plotly png RColorBrewer rtracklayer S4Vectors scater scuttle sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment statmod SummarizedExperiment tibble viridisLite]; }; + spqnData = derive2 { name="spqnData"; version="1.10.0"; sha256="1wccrbnk1mgpi9hfk7agjyhlkv6awpmk1iaqng9m6540s51wqrb2"; depends=[SummarizedExperiment]; }; + stemHypoxia = derive2 { name="stemHypoxia"; version="1.34.0"; sha256="177zrz7pg3i5rl2yl2mv8chasaa6kjanmqp1q1fn3lxb5w7cc12w"; depends=[]; }; + stjudem = derive2 { name="stjudem"; version="1.38.0"; sha256="07hv42g9p2n2yflp5zfss3n8l1mbfvx70xrgd4jshrbf7vq52w7s"; depends=[]; }; + synapterdata = derive2 { name="synapterdata"; version="1.36.0"; sha256="1bihd9xg92v62p20hfk0q00jvfbpzpz80qlsqh14h5dcn663ivc3"; depends=[synapter]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="2.2.0"; sha256="1cywnnwxbwn1bfvha5dqc29lgb3q05hxdh0icql8w8lizv8z0zj6"; depends=[BiocGenerics Biostrings jsonlite remotes]; }; + tartare = derive2 { name="tartare"; version="1.12.0"; sha256="1ygv0h8v7yll9b0kp0v8sclbhwwlkz062ycxg5qa0yzkbr5msysc"; depends=[AnnotationHub ExperimentHub]; }; + timecoursedata = derive2 { name="timecoursedata"; version="1.8.0"; sha256="11kkf874757nka958vdg9nm4cqfv5rfy5jikm3bpw2k4bz5v3iwc"; depends=[SummarizedExperiment]; }; + tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.36.0"; sha256="0pax9b36bq64ry9wcpyrqlggqc2mfqxxp3yvv1hsxpsyb880xlmz"; depends=[]; }; + tinesath1probe = derive2 { name="tinesath1probe"; version="1.36.0"; sha256="0rjq0rpm1bq8jb63qa8ywzi6dp4dvwn3hyx7qqmgb2dazymqz8hj"; depends=[AnnotationDbi]; }; + tissueTreg = derive2 { name="tissueTreg"; version="1.18.0"; sha256="0wzxpi9ix1c6jk553vr87vhpfbigf4c280ynms4kl46rn63v3zvz"; depends=[]; }; + tofsimsData = derive2 { name="tofsimsData"; version="1.26.0"; sha256="06wyfskxy4mr6bf9c2h4idc637x7dnrfm2affd0wvfggypi8nxh9"; depends=[]; }; + topdownrdata = derive2 { name="topdownrdata"; version="1.20.0"; sha256="0hhl8wsj3x3ff9lv703qw9knyprm8ajlfbqqrlx37vkviwxb90zi"; depends=[topdownr]; }; + tuberculosis = derive2 { name="tuberculosis"; version="1.4.0"; sha256="0qai1w2gvwr6kz8jgb0g8bdb56xsasd9z18fjn85z0k87ml9pnw6"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.36.0"; sha256="19n0gw60vv4kygckdcl70qy16gm1hcwv5zg4dgn1a6mxpj65ksn6"; depends=[Biobase]; }; + tximportData = derive2 { name="tximportData"; version="1.26.0"; sha256="08xrfs8bca8vyh4wx5nd8mf7r8z3q46wflnrn2w57zavymgf8dqs"; depends=[]; }; + vulcandata = derive2 { name="vulcandata"; version="1.20.0"; sha256="0r0bs5d27knwpgpnhszg925slxdha94nika533iv3ggkv5f4927v"; depends=[]; }; + xcoredata = derive2 { name="xcoredata"; version="1.2.0"; sha256="0frv5xzqldxqylz82557acrnlzjakc3f1kpdbirvv19aj744x2h0"; depends=[ExperimentHub]; }; + yeastCC = derive2 { name="yeastCC"; version="1.38.0"; sha256="0c8mx5amk60gdjmrxjvm9qnhfh6vsxlz7n96a8a45c2xdyrr9bbz"; depends=[Biobase]; }; + yeastExpData = derive2 { name="yeastExpData"; version="0.44.0"; sha256="1z9hi3gflpj39ajg73gmyf1nx2sm0nl51fb5mb3giiwal1kp9js6"; depends=[graph]; }; + yeastGSData = derive2 { name="yeastGSData"; version="0.36.0"; sha256="00z4yvmyqnvwvbnp79k5hn85q4k8g54d46v7nmbkwf0nspj381wb"; depends=[]; }; + yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.34.0"; sha256="03vdl4wh11s6yqj8j9ws8is2yq7awwlr4h6q426lww6hnkadfbyw"; depends=[]; }; + yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.36.0"; sha256="1vqpm9jjs3d7ab9vkan7622dlz0z6pjnjy0dcr3xl3nc23kbvg3l"; depends=[]; }; + zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.18.0"; sha256="1nmgh1v2sryhhx0zrysv54lwvk63sqhhsks5jrvahpqd64p4k3qk"; depends=[]; }; ABAData = derive2 { name="ABAData"; version="1.24.0"; sha256="1wgniq7ibvjj6dx63ixr3i5yclqmg94qpifzfbzzn9yjj3wnikzr"; depends=[]; broken = true; }; + DREAM4 = derive2 { name="DREAM4"; version="1.31.0"; sha256="11ypc84agvq0q0v7bk0b25cm48awxay5hhhjd95gw9s7jk196i2p"; depends=[SummarizedExperiment]; broken = true; }; MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.30.0"; sha256="14mwg96g7aza81vc3hpmb41scmygl8vnsi6s8p48c8v92106asmb"; depends=[affy Biobase]; broken = true; }; MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.13.0"; sha256="1jzypgfmd6d0fdj9ycp4jwihjpxyinr5kwi2x2dg2z6hvxx97gb8"; depends=[]; broken = true; }; brainImageRdata = derive2 { name="brainImageRdata"; version="1.12.0"; sha256="072x7yn1ambf6hfpir6qdxl8bybv64blpbi1jdp0bvqlk66zs7zv"; depends=[ExperimentHub]; broken = true; }; + ppiData = derive2 { name="ppiData"; version="0.34.0"; sha256="10xbp12wim5kj1h2vkxn9x22fd92s2038w653y81jwbh2hyidybf"; depends=[AnnotationDbi graph]; broken = true; }; tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; broken = true; }; } diff --git a/third_party/nixpkgs/pkgs/development/r-modules/bioc-packages.nix b/third_party/nixpkgs/pkgs/development/r-modules/bioc-packages.nix index 8682a22125..8e9a7c8b51 100644 --- a/third_party/nixpkgs/pkgs/development/r-modules/bioc-packages.nix +++ b/third_party/nixpkgs/pkgs/development/r-modules/bioc-packages.nix @@ -4,2165 +4,2236 @@ # Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.15"; }; +let derive2 = derive { biocVersion = "3.16"; }; in with self; { - ABSSeq = derive2 { name="ABSSeq"; version="1.50.0"; sha256="1kwl0gcqwbgblwvpbvqlgnsi91km77j11f0q1f0gd6hhnv38mmlv"; depends=[limma locfit]; }; - ABarray = derive2 { name="ABarray"; version="1.64.0"; sha256="0kjq00i2mb21xyjjs3jy09ps80f11cy37wywzjvmxyjxzbsk4d7r"; depends=[Biobase multtest]; }; - ACE = derive2 { name="ACE"; version="1.14.0"; sha256="1xnw288vz810vjkidar5h218wyc0q2hx0k4zi3r88vaz5rfhc05m"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; - ACME = derive2 { name="ACME"; version="2.52.0"; sha256="0ilcsgpc4m47gifxc0yzx2xi3g4day515mncnnjvfdj3iq8xwk25"; depends=[Biobase BiocGenerics]; }; - ADAM = derive2 { name="ADAM"; version="1.12.0"; sha256="1cgcjykik9hjrwlvvgaccprcrimgq5kwh9cj6367yk9m574a4gmn"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; - ADAMgui = derive2 { name="ADAMgui"; version="1.12.0"; sha256="0vvd5qdwkfcr7zg7z63x3vvrcg63r6c9p383yvcg2lp8zmx8hsbs"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; - ADImpute = derive2 { name="ADImpute"; version="1.6.0"; sha256="0885kd8mpmwjpzpx14pi6l3mqcvsixk10vkf5h4sqb7di0nnna4w"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.36.0"; sha256="0awjxl2lwyh7hkjsx1zqsvrh649s9zn89za1iv8yd9l48ch2zfs5"; depends=[aCGH bit cluster DNAcopy ff GLAD snapCGH tilingArray waveslim]; }; - AGDEX = derive2 { name="AGDEX"; version="1.44.0"; sha256="0c44fw5ajdjc13409rn3lsv0jhlqa2qcak9b1k8hpig486xxzsr9"; depends=[Biobase GSEABase]; }; - AIMS = derive2 { name="AIMS"; version="1.28.0"; sha256="1z7yzaizyzcv556w8880603nd947k0d6raadjm42mdl66mma0cdx"; depends=[Biobase e1071]; }; - ALDEx2 = derive2 { name="ALDEx2"; version="1.28.1"; sha256="0xppx52sllbz4pli174422i4kkf37v0yl844088nbj3j9r6pfbj9"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; - AMARETTO = derive2 { name="AMARETTO"; version="1.12.0"; sha256="111dk19b9910icksyr592cvhc5gwvgknr5q4887j9yxbajd7hcmx"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; - AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.22.0"; sha256="0vdfabsrisdd7qq28f5ivd0v8zz49szqn677i5lhwnlaix220c54"; depends=[]; }; - ANCOMBC = derive2 { name="ANCOMBC"; version="1.6.4"; sha256="02vip6b6vkzwnwsmdxpmrkd8nb9diq05wvrs0yqvxxnvkj980ppz"; depends=[CVXR DescTools doParallel doRNG dplyr emmeans energy foreach Hmisc lme4 lmerTest magrittr MASS mia nloptr Rdpack rlang rngtools S4Vectors SingleCellExperiment SummarizedExperiment tibble tidyr]; }; - ANF = derive2 { name="ANF"; version="1.18.0"; sha256="1fa2pbdapymrpz01ws0m2fbzf11d723x6rbsys29v06is57f5lpj"; depends=[Biobase igraph MASS RColorBrewer survival]; }; - APAlyzer = derive2 { name="APAlyzer"; version="1.10.0"; sha256="1xixj6ck1akwc01gv7xsgnnflrkhflsrpq2cbxh5s7z6xj0f8k00"; depends=[DESeq2 dplyr GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HybridMTest repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; - APL = derive2 { name="APL"; version="1.0.1"; sha256="0v6m5vcj5c1f0f9d8ksyhq58jgqfrjsgg4vf9pmbb36gvf3k81dk"; depends=[ggplot2 ggrepel magrittr org_Hs_eg_db org_Mm_eg_db plotly reticulate rlang Seurat SingleCellExperiment SummarizedExperiment topGO viridisLite]; }; - ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.36.0"; sha256="1pnvw8psbql787m8lrmhd9xbmgkc3dbc70yfds1aggv50dk3yjk1"; depends=[ARRmData]; }; - ASAFE = derive2 { name="ASAFE"; version="1.22.0"; sha256="1l9iqw2imr6w2gwqrmg05jp6lj2xc7hbyhd144d4q8vw8z7ga4ns"; depends=[]; }; - ASEB = derive2 { name="ASEB"; version="1.40.0"; sha256="1i0r4vimk6is4j4rr14ajp8papznpmmr0bhwd96s8w53cqdqph7p"; depends=[]; }; - ASGSCA = derive2 { name="ASGSCA"; version="1.30.0"; sha256="0mxrrkm2lg7gxjh8ynn6qmryn8wqda7b83sr51dpgblay83jcbaq"; depends=[MASS Matrix]; }; - ASICS = derive2 { name="ASICS"; version="2.12.1"; sha256="1qx0qpwl34bayk3gj6lvc7rsq3wnzkdngz3wyxnsab0r3cmqcbab"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; - ASSET = derive2 { name="ASSET"; version="2.14.0"; sha256="029acl5k9d4hnvy3jia9cr4rk6w31zn8b5s79i6lazq1cp236hbg"; depends=[MASS msm rmeta]; }; - ASSIGN = derive2 { name="ASSIGN"; version="1.32.0"; sha256="1f1lqip58cvf85nmq8mj7phlk0plcfv1h5ihc0cf2h5y7n4wrm9n"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; - ASURAT = derive2 { name="ASURAT"; version="1.0.0"; sha256="160wvlvyc5dddjngmd21s1av292f6nvjkabag9iz8dipivicyi23"; depends=[circlize cluster ComplexHeatmap plot3D Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; - ASpediaFI = derive2 { name="ASpediaFI"; version="1.10.0"; sha256="1wn7iwaj92j1qvfp4l93ir4dawd1yczff3qyhh886qw2jcbf0b99"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; - ASpli = derive2 { name="ASpli"; version="2.6.0"; sha256="1frlcwa8m4imfx6ncav8r8yskyaf4ibha177mfnp9y84w6mphynz"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; - ATACseqQC = derive2 { name="ATACseqQC"; version="1.20.2"; sha256="0jj7n0mcj0gciw0ksazlksgmwzp51a40pwqhf0c7la0cc4bnrkqp"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; - AUCell = derive2 { name="AUCell"; version="1.18.1"; sha256="17wr7dycll0l1gax4w268qw7is163bs51rj6p1qnx1dgc9ibnsgr"; depends=[BiocGenerics data_table DelayedArray DelayedMatrixStats GSEABase mixtools R_utils shiny SummarizedExperiment]; }; - AWFisher = derive2 { name="AWFisher"; version="1.10.0"; sha256="050k7w0azsl7rqx2pxgccihzc2q8pmh6fyy4gib2d42sdyijr2n1"; depends=[edgeR limma]; }; - AffiXcan = derive2 { name="AffiXcan"; version="1.14.0"; sha256="0wj9shzmlxpksbxny571xzfcmmqqzjlk1vq4mx1is2r6ma7jkblq"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; - AffyCompatible = derive2 { name="AffyCompatible"; version="1.56.0"; sha256="0x3lj1jgqq67389rzfklah5p878ns9b4fpdpz455m2gq9sk7qsda"; depends=[Biostrings RCurl XML]; }; - AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.42.0"; sha256="16akwmpzwxai7ks5bvc1yyb9sx2scv9b9gas5avb0sk5fk0h3nsf"; depends=[affy]; }; - AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.46.0"; sha256="0jic89gyphbv7jzlfgm9bh1aq48lp86rq6hr34gsg9z0pa1192xa"; depends=[affy affycoretools Biobase limma preprocessCore]; }; - AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.34.0"; sha256="0w4xd0xzkwx7bbhrgqligpahlhg85rginknx520z891r8v0bim2z"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; - AlphaBeta = derive2 { name="AlphaBeta"; version="1.10.0"; sha256="1ikdrigma02gnl6ggrc89bjsiqmd7knpb9kw7nqyrdnv3qjd9iag"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; - AlpsNMR = derive2 { name="AlpsNMR"; version="3.6.1"; sha256="09z2k6mqr837bh422mpy0k71hwsmc4s730f58fq9ya651cjzvdcs"; depends=[baseline BiocParallel dplyr fs future ggplot2 glue htmltools magrittr matrixStats mixOmics pcaPP purrr readxl reshape2 rlang rmarkdown signal speaq stringr tibble tidyr vctrs]; }; - AnVIL = derive2 { name="AnVIL"; version="1.8.7"; sha256="16vqqm7p3v92b51ir9kmaa410p57bpqpxr4nvqngz2c8vvkm5l5g"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; }; - AnVILBilling = derive2 { name="AnVILBilling"; version="1.6.0"; sha256="08bc1lsjkgs0hmrfi2fbk5swbi5ckgrv4vhsfkqqywfpnkq9k436"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; - AnVILPublish = derive2 { name="AnVILPublish"; version="1.6.0"; sha256="1iwvm60lricpsf4nr99wxhni0lwaa4z8aibr7lwj9gdwf2y43c9x"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; - Anaquin = derive2 { name="Anaquin"; version="2.20.0"; sha256="1jgpnls2djl1yzvnk64qc83mljmlci7wflwkza3wr0sv6r47b0dd"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; - AneuFinder = derive2 { name="AneuFinder"; version="1.24.0"; sha256="1acsp987jv2x4qwbgy3y7ff4r2qz7680b0nbr37m4lmncqfgh8yl"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; - AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.58.0"; sha256="15cwy7lic89jwl3dr7j4pb5bx457jdpvzvylr71624s0p0j9rgwn"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; - AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.20.0"; sha256="082lpcd6yr2nkxndlck2wqqd3nfdx7lnpw8barxgv41q4l7v4ald"; depends=[GenomicRanges lazyeval]; }; - AnnotationForge = derive2 { name="AnnotationForge"; version="1.38.1"; sha256="0lcr79a3570h7zg4z691gxg2vlyqnars5811q0clzinbmq7b4x3v"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="3.4.0"; sha256="03dmbx43rsv9xv94lk12gpraq47ryc13jijwma3q05hl9wn8xjxs"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.26.1"; sha256="1s104n0dkrncbdihd4jq28ibl0v8fnbaxfkhrv7jmx3wh7j4vnfp"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; - ArrayExpress = derive2 { name="ArrayExpress"; version="1.56.0"; sha256="0v2v7v0gim0bsg34ciplapz6mjih68yqhcgzdlhcyj2d6vrgiad5"; depends=[Biobase limma oligo XML]; }; - ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.46.0"; sha256="1bwgqadqrx2zasyr1dhapmwkapdfdmzl6z7fdlmafmlsfyvqvq68"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; - AssessORF = derive2 { name="AssessORF"; version="1.14.0"; sha256="1l87bpny9k3jbzbzmb9h2ijvblrj471gqv26fyzbvb3vr6y406z7"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; - BAC = derive2 { name="BAC"; version="1.56.0"; sha256="0dkw7438d2sf6nb577dnzija54qs0nhlr47lb73li60fhlnvqmh2"; depends=[]; }; - BADER = derive2 { name="BADER"; version="1.34.0"; sha256="0i5x1r2ns1hxhqk5jyfqird81hck1hllvvgx5bn0rb5vl99g8spm"; depends=[]; }; - BAGS = derive2 { name="BAGS"; version="2.36.0"; sha256="1c1sdv8199kj2pd1hwnbmbf2a4fb7zkazsjgn8hi9c5sm7mlnc29"; depends=[Biobase breastCancerVDX]; }; - BANDITS = derive2 { name="BANDITS"; version="1.12.0"; sha256="1423djb7cij68y0q2dcp8q7lrcn2fxjn6d25v4qy3w00b2w8ppg9"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; - BASiCS = derive2 { name="BASiCS"; version="2.8.0"; sha256="06g041xcv2qci2aapj3g4i32xzw508nhvvss9lfn8g2vdhj07inn"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; - BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.26.0"; sha256="1m4pwfl920pkhnpdc1qps65nsihn73hzyach1d5dhvx884540lq4"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; - BCRANK = derive2 { name="BCRANK"; version="1.58.0"; sha256="0c1q7vag7jj16wiw0lbvl1b5k8f1wyn9rv0rpnpl4642ab6sps1v"; depends=[Biostrings]; }; - BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.14.0"; sha256="19b3jm2a5nz7p43sxa0b08zvc1lvjnqd5g052rj98n6knfb403k7"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; - BEARscc = derive2 { name="BEARscc"; version="1.16.0"; sha256="0vslyhscqw1y519qmbilb1fw0482aplib8kb37pvmhy3ak1mcxqj"; depends=[data_table ggplot2 SingleCellExperiment]; }; - BEAT = derive2 { name="BEAT"; version="1.34.0"; sha256="1hgqiy52l34z8zxzvq5j528sy3pf2l5q1mjsccs2nkxalpd31vmg"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; - BEclear = derive2 { name="BEclear"; version="2.12.1"; sha256="0r8w71zwsrva7734d1a23qbwvd7p380h0i5d2lrdgdq4h5p7kzsm"; depends=[abind BiocParallel data_table dixonTest futile_logger ids Matrix Rcpp Rdpack]; }; - BGmix = derive2 { name="BGmix"; version="1.56.0"; sha256="03f6nknp3n49yvg2d9qsmds676rva70pr4wjz0md228jczgjk0vj"; depends=[KernSmooth]; }; - BHC = derive2 { name="BHC"; version="1.48.0"; sha256="1kqajd16981y5yaak2imaq1i7pilgqdr3nbhggsakh787j1d9rc5"; depends=[]; }; - BLMA = derive2 { name="BLMA"; version="1.20.0"; sha256="1425r1gavszzdfh7zy9gnc20507vjqimadxrm9yi1y1knk5ikas2"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; - BOBaFIT = derive2 { name="BOBaFIT"; version="1.0.1"; sha256="0fvdmcdfyky8471nl6pb3iwrwgm8ydwx2xkh7cr94gmr021ghfcq"; depends=[dplyr GenomicRanges ggbio ggforce ggplot2 magrittr NbClust plyranges stringr tidyr]; }; - BPRMeth = derive2 { name="BPRMeth"; version="1.22.0"; sha256="0841wcb5khfi7g358jkrih64fwabwkdf9xydxxlvvvr4xw92pxqj"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; - BRAIN = derive2 { name="BRAIN"; version="1.42.0"; sha256="0b2fjhv05lgvgpdfs2p191vv8d7v3h1gfwi29hc5agpk3fg1rzqn"; depends=[Biostrings lattice PolynomF]; }; - BRGenomics = derive2 { name="BRGenomics"; version="1.8.0"; sha256="1nyf5qsf5av2s81bbwi43skaggwa5pd59sfidavr1vcizjmc9qd8"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - BSgenome = derive2 { name="BSgenome"; version="1.64.0"; sha256="17gqrmaf6xxghgrzcansl9gfw3ghkrqp87swlnwgyghqvflr5qxc"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; - BUMHMM = derive2 { name="BUMHMM"; version="1.20.0"; sha256="1xn4ikvjilr04c68y5is27g9kmxlmlijx3a1jq8vjbzz410ir6g9"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; - BUS = derive2 { name="BUS"; version="1.52.0"; sha256="1w0d79gqk6xb6yhnffka51aiv540j1xknryhr0xznb9q8hf6aymi"; depends=[infotheo minet]; }; - BUScorrect = derive2 { name="BUScorrect"; version="1.14.0"; sha256="04c6xl2nbfgvzqi0kqf1g5sp3bf6a1blaqhassja9ara0wbs7i7a"; depends=[gplots SummarizedExperiment]; }; - BUSpaRse = derive2 { name="BUSpaRse"; version="1.10.0"; sha256="11rw7r0kdaqbj9iwjbyg107ayzqnrckc6w1g3v13lgdym0c864mr"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; - BUSseq = derive2 { name="BUSseq"; version="1.2.0"; sha256="1lcw75drcmsrpl5ski1xjhjr8whndp5h8y8hs5vkjqmllrrw0x11"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; - BaalChIP = derive2 { name="BaalChIP"; version="1.22.0"; sha256="02qwk9n2fyg5f9xxjiiha9mi6p9ii3zi5x7w84sh5d5g58s27g6q"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; - BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.24.0"; sha256="1a1pqmh5ak9s3k1lxw6flanchk24zyznwm34ixi2b78wdc3hqgm9"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.40.0"; sha256="0jyw4pnybsd6ywpaamk5ywkrcib2z48farsnszmwq97zlbmra7fj"; depends=[RCurl RJSONIO]; }; - Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.32.0"; sha256="14pvjdkgmkbnbmyyp8wfgvs6b1bvy1rhqwg8hc6jclwl8hfyxxxp"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; - BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.24.0"; sha256="0qmdiwch808i2k8fcgx8xdrk9j4lzm7x6j9k6n7iac125i1san31"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; - BatchQC = derive2 { name="BatchQC"; version="1.24.0"; sha256="1mhffv9ic52v7jm3bphg2q0spk4fz729yjapiqxl56bira04bagi"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; - BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.22.0"; sha256="122vg0lvs3fkgwcvn259rk0m1vaz19pdfvhsj5m1hd3d2h44pv65"; depends=[Biobase]; }; - BayesSpace = derive2 { name="BayesSpace"; version="1.6.0"; sha256="0086fw2chymjwxwgzax6lky84kaa34900ca2p90pbjqx14b161vf"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; - BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.48.0"; sha256="19f0y6drsrsrwysb16xx6mafgiw55fr35pwxkjxn0ks6jc5vx1cx"; depends=[]; }; - BgeeCall = derive2 { name="BgeeCall"; version="1.12.2"; sha256="0l6smwy55mm4clb71l4bpch3bayyyf87nq1asbrv6s6fd22mmwil"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; - BgeeDB = derive2 { name="BgeeDB"; version="2.22.3"; sha256="1f6lrazaibbz21sqvj59rq6ps9m1riw2y0kyidbn29mxf4ibwh3k"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; - BiFET = derive2 { name="BiFET"; version="1.16.0"; sha256="03ypbbn8i0f4bl4m6wfdcv702jydniak56wqjb1vlrckd9aphwzq"; depends=[GenomicRanges poibin]; }; - BiGGR = derive2 { name="BiGGR"; version="1.32.0"; sha256="0n57bgl6xz5b1gpw4isimq2pqxmlabn7jzhbjg2fbxcklabdvrcw"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="3.28.0"; sha256="0r3i7n45qgj8wzdsx8wmfk0lc4xbcvxvmfziiqzig7r706q2c2hm"; depends=[igraph Matrix Rtsne slam]; }; - BiSeq = derive2 { name="BiSeq"; version="1.36.0"; sha256="1cnsh7cx500a3aaxqc7vn56b9ng2m5m9gxw1bhi84nm1hiig4ff1"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; - BicARE = derive2 { name="BicARE"; version="1.54.0"; sha256="0qjh5bsjcjry6k1vzdaascwy2shjrkc2bw0w57w0qa458cbi89z2"; depends=[Biobase GSEABase multtest]; }; - BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.2.0"; sha256="1lypprchiyxyfjj33qzq00xla4sqd3w9dp3sa863iyhycwr3bya8"; depends=[GenomicRanges ggforce ggplot2 matrixStats plyr rtracklayer S4Vectors tidyr]; }; - BioCor = derive2 { name="BioCor"; version="1.20.0"; sha256="004mksswampwisljcdz6fswwbgdjdii3y86gjzib0gf8v4w7w4q3"; depends=[BiocParallel GSEABase Matrix]; }; - BioMM = derive2 { name="BioMM"; version="1.12.0"; sha256="1sxa6safl4dp2b89bmgshdvkc1s0kxrmld3xfv2wlxkf90b3b57h"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; }; - BioMVCClass = derive2 { name="BioMVCClass"; version="1.64.0"; sha256="078pnyygbvbfxziqspfr1nn78w67xyb4qmiwc34czga5psblvfwz"; depends=[Biobase graph MVCClass Rgraphviz]; }; - BioNERO = derive2 { name="BioNERO"; version="1.4.2"; sha256="0dsznfnhidbmf52rv8l26f1ms2k9yy4q4c6cf3x8ylc79c1sjrcp"; depends=[BiocParallel ComplexHeatmap dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggrepel igraph intergraph matrixStats minet NetRep networkD3 patchwork RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; }; - BioNet = derive2 { name="BioNet"; version="1.56.0"; sha256="0kcw71j4nmdkn373wk21ak6h0v4gycivnfrklb72kk1qcmsy1wrm"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; - BioNetStat = derive2 { name="BioNetStat"; version="1.16.1"; sha256="0zs6pymvxb95sji0rnnzaz3whj7hsvj2kl4n4gzj7w1q0prbfpb2"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; - BioPlex = derive2 { name="BioPlex"; version="1.2.3"; sha256="0cn0x6ij2a3xy61bq0qy5amp0ipj4r4shh7g0vlwbkrclj9w347r"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; }; - BioQC = derive2 { name="BioQC"; version="1.24.0"; sha256="0vb2nnzqvyv25pw8qshcmijravswafg0858pkgqjgiv7wsr2mn3m"; depends=[Biobase edgeR Rcpp]; }; - BioTIP = derive2 { name="BioTIP"; version="1.10.0"; sha256="1sihi5zy7mlabh3ix1wvdqz8ibfq1avl8bnxjhvxyzq40zbcklh6"; depends=[cluster GenomicRanges igraph MASS psych scran stringr]; }; - Biobase = derive2 { name="Biobase"; version="2.56.0"; sha256="1mnxky78an079p60427cjvk4fzilp0xzy6b85fq274qvdcrz8jbv"; depends=[BiocGenerics]; }; - BiocCheck = derive2 { name="BiocCheck"; version="1.32.1"; sha256="0bq4xrz1spp0bmbccxydkw6yw03by5dysz85mn152ab6xixm52lw"; depends=[BiocManager biocViews codetools graph httr knitr stringdist]; }; - BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.8.1"; sha256="0a4dcga18bw5mvzmsml28bf4zclz32pp9iflnbvps7pdxvhmmg9d"; depends=[dplyr httr memoise readr whisker]; }; - BiocFileCache = derive2 { name="BiocFileCache"; version="2.4.0"; sha256="1bdbmlixrd8wvs25nmzdksq5hwnsxf8b6ds9qwx01h284vky5vsw"; depends=[curl DBI dbplyr dplyr filelock httr rappdirs RSQLite]; }; - BiocGenerics = derive2 { name="BiocGenerics"; version="0.42.0"; sha256="0iv9bnpw2hycndwbmjsszqfwrksz6dfr6qcz78jkssc9ldsgmdhc"; depends=[]; }; - BiocIO = derive2 { name="BiocIO"; version="1.6.0"; sha256="16j826w4zrmbgpmq6nyglcrjailsfv48ih1rz1qn383g7v503ydp"; depends=[BiocGenerics S4Vectors]; }; - BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.14.0"; sha256="1a43hzmcpxviqa9723hkafr6gm358amfpqj9d56imclkkfkdz95x"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; - BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.16.0"; sha256="1alplszw84vqa1mvzp996f94s40scmh4qwbrqhg43hrnyvbnq7pi"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.30.4"; sha256="1sf87gxyh41v82pip71qkqpmind357zyngzyg1f80iz65c85xk0k"; depends=[BH codetools futile_logger snow]; }; - BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.14.1"; sha256="0akryshjdn227a8ir8r0lb59v060h58rhy5vjmdxax8p81ajzxkd"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; - BiocSet = derive2 { name="BiocSet"; version="1.10.0"; sha256="1ghba7020inrdxlbrrgds9gjymjxjma2p89b9lgkjin89zalqglh"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; - BiocSingular = derive2 { name="BiocSingular"; version="1.12.0"; sha256="1sraycnn0jahpi8kni1y8ik00ga89fvwqjmbr8388968q22mvm3x"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; - BiocSklearn = derive2 { name="BiocSklearn"; version="1.18.2"; sha256="0q9qlp12ycmhnvfqwn7mvrhd8ypwnbbf715ficgx1xnagh72dpgg"; depends=[basilisk reticulate SummarizedExperiment]; }; - BiocStyle = derive2 { name="BiocStyle"; version="2.24.0"; sha256="1nwiib201b9q1x19ihqjqr5jl0vnid8wfgpi8sa3y02bn722g5a5"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; - BiocVersion = derive2 { name="BiocVersion"; version="3.15.2"; sha256="0rs4nyza4hqqk204d037gi013135wgfhx5asq2dsdjc9vk5nwzfn"; depends=[]; }; - BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.22.0"; sha256="1jj4icpkhrv9f6yx3vghkpdil1pfghf3yvc9756wmndvhs100r5l"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; - Biostrings = derive2 { name="Biostrings"; version="2.64.1"; sha256="1wk8nlmp6f6fsjrcb4fb48s3ay38yywwad748i6lfkkcw2pdfw33"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; - BitSeq = derive2 { name="BitSeq"; version="1.40.0"; sha256="0pfsdc15zfn7sizf0zqh0wjg5yr84kd9lmdifykkbxk882gjy5fh"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; }; - BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.4.0"; sha256="1dlb6jbzrdp417sm55y0h90sx2l62h4329l67w49z321yi7iyw1j"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; - BrainSABER = derive2 { name="BrainSABER"; version="1.6.0"; sha256="1rc4ff0rglbj1kax4fdn6mmv8jzz5qyapi9mjb4nh9ffaswfj09n"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors shiny SummarizedExperiment]; }; - BridgeDbR = derive2 { name="BridgeDbR"; version="2.6.0"; sha256="1389ymch31wqmp8spvwzyhn95bv1h7nkzhin6mzz1prp8rsdpc0z"; depends=[curl rJava]; }; - BrowserViz = derive2 { name="BrowserViz"; version="2.18.0"; sha256="03z1vkbimvhgjl9c08nndvjzgg2d3d3sgx9mk8bv65brpgpzd3nd"; depends=[BiocGenerics httpuv jsonlite]; }; - BubbleTree = derive2 { name="BubbleTree"; version="2.26.0"; sha256="1q5hlq80p848askxafni502yxnp587vpla65hb2925pcighnz5a3"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; - BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.60.0"; sha256="1sla61mrmwpk3aczgggzmnfgy9wr1cqknv6rsyscjniii7shn360"; depends=[]; }; - BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.60.0"; sha256="07m2r046lk1akbccy52n2rg3ydzkwl157xlyylfqhkmpz7x9zix2"; depends=[BufferedMatrix]; }; - BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.4.0"; sha256="0gy972qvvvf4rbxrcj24l3x8kk3ic85y6l655d54fvlbwr8h82iv"; depends=[IRanges Matrix S4Vectors]; }; - CAEN = derive2 { name="CAEN"; version="1.4.0"; sha256="054wrw550sxn6gn1h3yra623k48syiqn0cm0kz0nn63ys9fmwk3l"; depends=[PoiClaClu SummarizedExperiment]; }; - CAFE = derive2 { name="CAFE"; version="1.32.0"; sha256="1mcmfghl982dqr13bnybx0v5gs302hnnar1m64l13f4si6lnxk62"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; - CAGEfightR = derive2 { name="CAGEfightR"; version="1.16.0"; sha256="1nn1flq3732vbxb7r971sbk1qxiqdgzgib8v0g21v8362vajcjwv"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; - CAGEr = derive2 { name="CAGEr"; version="2.2.0"; sha256="03gxnbsf8byk1ggijf264p6dyvl09hihkmrcx5m28pjs0imlzmhw"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; - CAMERA = derive2 { name="CAMERA"; version="1.52.0"; sha256="0jz8i0m8g8f18yzjzkgf4xsk038nm6h6qdhsdmmkprz97ysjayr5"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; - CARNIVAL = derive2 { name="CARNIVAL"; version="2.6.2"; sha256="0shq6bdhbfvsg0ihdsbz0gdpn8mwa2h67zm6kxfdh862ssfn4rbz"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr tibble tidyr]; }; - CATALYST = derive2 { name="CATALYST"; version="1.20.1"; sha256="05vfqwa9qsm16px77s9bzygs6zymcxshymmpvz86a9l1cy1yxbza"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; - CAnD = derive2 { name="CAnD"; version="1.27.0"; sha256="14x0m5iv7dm1iii5zsny9wnf4j5ddh0kij2jm658r3i4wnc99mkb"; depends=[ggplot2 reshape]; }; - CBEA = derive2 { name="CBEA"; version="1.0.0"; sha256="08hhpd7syycliqn5fw3x6pfxi89pghm4b4my4p73lvgkr75n71x4"; depends=[BiocParallel BiocSet dplyr fitdistrplus generics glue goftest lmom magrittr mixtools Rcpp rlang SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; - CCPROMISE = derive2 { name="CCPROMISE"; version="1.22.0"; sha256="1zmm22rbwp706l2xl5623aja0fw01r0w9cn3dv8ga0riz3pz2fy7"; depends=[Biobase CCP GSEABase PROMISE]; }; - CEMiTool = derive2 { name="CEMiTool"; version="1.20.0"; sha256="05lpi29mwv45na4b2pi59fdv6vfxdjmyd0xf1lsrmiy7c1p2df8s"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; - CFAssay = derive2 { name="CFAssay"; version="1.30.0"; sha256="0cfkkvci9zf08zfgxv6knz00qf89x45g81ifml274y4jg40swcjd"; depends=[]; }; - CGEN = derive2 { name="CGEN"; version="3.32.0"; sha256="1010mi5s82q7v2dwfyn1a65cijxpn9lrjgn5pm5s6blzb8l4s7d4"; depends=[mvtnorm survival]; }; - CGHbase = derive2 { name="CGHbase"; version="1.56.0"; sha256="1q8yy60r4g5nyv2gbfdgk192xd73c0rrjr668d5616ddb7sx8wcr"; depends=[Biobase marray]; }; - CGHcall = derive2 { name="CGHcall"; version="2.58.0"; sha256="1qpsibp4gb09sn6fkwwrdjkh3a28lqfbk18c6fvn4m386j96ps65"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; - CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.50.0"; sha256="16i0i83wd3ibzkj5l5az3jxgsp78i6ragl3yiy3yymvgr9f2z3fz"; depends=[Biobase CGHbase CGHcall]; }; - CGHregions = derive2 { name="CGHregions"; version="1.54.0"; sha256="18k833qpbkyj8ywvgmglcxm3cqaj1ys4ygq7cvnv43d6sm4fi44m"; depends=[Biobase CGHbase]; }; - CHETAH = derive2 { name="CHETAH"; version="1.12.1"; sha256="19nx25f4m45k9wc4rdb5siw7p4zdfrm75x0rwfckbrkqlk9iaj4q"; depends=[bioDist corrplot cowplot dendextend ggplot2 pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; - CHRONOS = derive2 { name="CHRONOS"; version="1.24.1"; sha256="1xkjliliwq03qklhcsvm2sbw6hprvzwid2cccb5zyx6gap7kszaz"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; - CIMICE = derive2 { name="CIMICE"; version="1.4.0"; sha256="12knj9vz41kbx0jzqw6ah1ils6hsxv5fbnw98mbi3phnr3kl9ih4"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; }; - CINdex = derive2 { name="CINdex"; version="1.24.0"; sha256="1k6wl4y4za85n8pf96x9zj7irmq3glkpyz612wxj1s16whl6wy6s"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; - CMA = derive2 { name="CMA"; version="1.54.0"; sha256="0bl8j1dx153k66vvmhsln1s58jnjfrp6ihfnydsgiq72zqkxhcbz"; depends=[Biobase]; }; - CNAnorm = derive2 { name="CNAnorm"; version="1.42.0"; sha256="1cnf8lj16d1z663ff4k5vfq4bkyj1jims6a6phkjj1sb1zsx3xji"; depends=[DNAcopy]; }; - CNEr = derive2 { name="CNEr"; version="1.32.0"; sha256="05zvr5fv8nprxqh2wvvrlf737dq242i20p1rpyqjaxihl6xl62kq"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; - CNORdt = derive2 { name="CNORdt"; version="1.38.0"; sha256="161qhpx6kyn87h1p72mwfpi1pd4ck3cssr4f291axhw99sg6968c"; depends=[abind CellNOptR]; }; - CNORfeeder = derive2 { name="CNORfeeder"; version="1.36.1"; sha256="07k18izfzfnm7l5bddbdyhignv18fgv3varvi8ynv22zd0gf9bs1"; depends=[CellNOptR graph]; }; - CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.38.0"; sha256="0qnfvfd2wsmpaggq2amp8n1ry7wgysxysfh97rvrx5ymivbzr18p"; depends=[CellNOptR nloptr]; }; - CNORode = derive2 { name="CNORode"; version="1.38.0"; sha256="0bvlwlf0mm6q3cp2vf87rb7xsha5cz9bk7vsi6ssxngmspiq3kjz"; depends=[CellNOptR genalg knitr]; }; - CNTools = derive2 { name="CNTools"; version="1.52.0"; sha256="1d5ahszdf0brbmhd1vi2l9v1qi8kbpkw2kawcdf3rxibla0756y3"; depends=[genefilter]; }; - CNVMetrics = derive2 { name="CNVMetrics"; version="1.0.0"; sha256="15ihpsr804qrywf968h0zvskcz1w8117hlh6ly5lr30afs4kfq5g"; depends=[BiocParallel GenomicRanges gridExtra IRanges magrittr pheatmap S4Vectors]; }; - CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.28.0"; sha256="1d7srf01ds32nbn2m26nc2bffi59dc2pc9nn5whb7kkgawgbh4a9"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; - CNVRanger = derive2 { name="CNVRanger"; version="1.12.0"; sha256="08w1nmpvyy302024g6xcb3vi4hr8kspxqx40qs234l6k62xsri4z"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; - CNVfilteR = derive2 { name="CNVfilteR"; version="1.10.1"; sha256="1sbgzsbiz0jhlswsj4xa517ay5pkjncikz653k6n7jiq71d2x81i"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; - CNVgears = derive2 { name="CNVgears"; version="1.4.0"; sha256="1n93vbxsb69j302rbbgb10z576hmhm0f8hwjv36xr92chy7x6fya"; depends=[data_table ggplot2]; }; - CNViz = derive2 { name="CNViz"; version="1.4.0"; sha256="062rr0im9dfi7qgkwz3a34m63vd479n9m7d1nlm22fcalym5s08r"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; - CNVrd2 = derive2 { name="CNVrd2"; version="1.34.0"; sha256="1mdn5dljl8cw7sax4d0p6pv7kc9li8g3r19yybyhbv7wzh6q350j"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; - COCOA = derive2 { name="COCOA"; version="2.10.0"; sha256="0ml09hihkf0drx743a44ff978nn8jgcpf4wchr7zybyj5k52dc11"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; - CODEX = derive2 { name="CODEX"; version="1.28.0"; sha256="11pq2hym0hhg42pbk59fj0xri12i8mn6qhf3ad182asqh5sngvdp"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; - COHCAP = derive2 { name="COHCAP"; version="1.42.0"; sha256="0wy91spx9iv81xqw7kqljhmy2wazpmk8s17bq6ssmybg6yxhdj5j"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; - COMPASS = derive2 { name="COMPASS"; version="1.34.0"; sha256="0ib2v9d8bzjykrdfpclzxh27lkj2iaxlvl6z58n44x3kflb4js0w"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; - CONFESS = derive2 { name="CONFESS"; version="1.24.0"; sha256="11k4j21lj27pp6ngf361k1mmq7drnd7xca62jsnrh4h9j00lsmg8"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; - CONSTANd = derive2 { name="CONSTANd"; version="1.4.0"; sha256="04lw35r8c979xmzlq7ikf83vficp6rjlrr0iqzs6wlhzj5s0zfpz"; depends=[]; }; - CORREP = derive2 { name="CORREP"; version="1.62.0"; sha256="0lkgnypkpjbx9qhwph1ylijfqcxhjrvkdhlf4i5mpnq9ghpa0a3z"; depends=[e1071]; }; - COSNet = derive2 { name="COSNet"; version="1.30.0"; sha256="1gz1kxjbbigvbgzk1sb3207gxhx70jnd1dfh89xpwsswia9r6laz"; depends=[]; }; - COTAN = derive2 { name="COTAN"; version="1.0.0"; sha256="0rkxz9f13jdm903k8ywrynvrpx4izv662pl0awbclicb1994adpy"; depends=[basilisk circlize ComplexHeatmap dplyr ggplot2 ggrepel Matrix reticulate Rfast rlang scales tibble tidyr]; }; - CRISPRseek = derive2 { name="CRISPRseek"; version="1.36.0"; sha256="1sw4jrq14wnc9v5ybgj3xrmnvh6kf9z6ybvskbx6nm29mz8116z3"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; - CRImage = derive2 { name="CRImage"; version="1.44.0"; sha256="0bf6lk3c04c5l08md43lda2rwj3way79ap259d8cz5yn24dhklf1"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; - CSAR = derive2 { name="CSAR"; version="1.48.0"; sha256="0lzdl84d84nf5jjw5cc5lr36pllaw89ci08sn559dsrmvn9c5c1w"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - CSSP = derive2 { name="CSSP"; version="1.34.0"; sha256="0asb29dxhr92cspfq6v0iz8pdhf2j3amrlisjpm9nwhd8nwaxbj0"; depends=[]; }; - CSSQ = derive2 { name="CSSQ"; version="1.8.0"; sha256="1kgadkqjcac127xbaxr38r2icfhdz6y4q1w9xpamj4mjb6d27hq7"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - CTDquerier = derive2 { name="CTDquerier"; version="2.3.1"; sha256="18pxg4qhgf03sq48yp5m0x0jq5y27pbpqqlcvpn2pj09dzx7camc"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; - CancerInSilico = derive2 { name="CancerInSilico"; version="2.16.0"; sha256="1xswflpx055x3lkakbvxaw6q8y4ndrpr9ma1wyia63ghvdnaian0"; depends=[BH Rcpp]; }; - CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.22.1"; sha256="0dg35d0m1lvrqbq3v406qagjdpwi2kfsfvnby3mcj9lpn7vahg0x"; depends=[cluster ConsensusClusterPlus impute limma NMF sigclust survival]; }; - Cardinal = derive2 { name="Cardinal"; version="2.14.0"; sha256="07048rzp4x6593836a9iag8xjq93a94z9zvj6cbp0bj15w3p62r6"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; - Category = derive2 { name="Category"; version="2.62.0"; sha256="07js03cfdd6gzbzw14iavlqxynfcqszh988v6k1a3h074wxiivqd"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; - CausalR = derive2 { name="CausalR"; version="1.28.0"; sha256="1ij6z12a6irbd1hd8nzd01xipmrgrpj7gqm6gp5r3hd7gfdpsway"; depends=[igraph]; }; - CeTF = derive2 { name="CeTF"; version="1.8.0"; sha256="0hs5jk6x6kamajs61122vr39n7x65rx5qk3sfj2lil9r4wlmmc13"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; - CellBarcode = derive2 { name="CellBarcode"; version="1.2.0"; sha256="1xan4ha7aiasch2h1lk7adj2dc3prpmiily1s6pfy0chwj0bi76n"; depends=[Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp S4Vectors ShortRead stringr]; }; - CellBench = derive2 { name="CellBench"; version="1.12.0"; sha256="1sw3z3n7vdvw2352amc7biz35dmyzx7fhxdmz1jr0gdf0fhwhr1s"; depends=[BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; - CellMapper = derive2 { name="CellMapper"; version="1.22.0"; sha256="1sz81czvam86am9mrzs3kn4qn0qz6402i7n2bdic7hcchl00qbbd"; depends=[S4Vectors]; }; - CellMixS = derive2 { name="CellMixS"; version="1.12.0"; sha256="06xjxdgmgndc06xvgg1kylnh8248j780r4jbc27hga6jha9jbh1f"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; - CellNOptR = derive2 { name="CellNOptR"; version="1.42.1"; sha256="0hacmjg02hz9qjk0dj95pwg3670gkvy22hs1wlvkrkicmwk4746r"; depends=[ggplot2 graph igraph RBGL RCurl Rgraphviz rmarkdown stringi stringr XML]; }; - CellScore = derive2 { name="CellScore"; version="1.16.0"; sha256="11iqs9isggfp5l1sh9ndsrb5f57lhgpspsb5mmzd1vn182bsj3n8"; depends=[Biobase gplots lsa RColorBrewer squash]; }; - CellTrails = derive2 { name="CellTrails"; version="1.14.0"; sha256="11xrkib9ajwsyz608d221r2z0nb67063ssmwd6i2zd4i7vhci5b0"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; - CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.6.0"; sha256="0ccx0698rircn5csd56il1v4s0707fhp2b7yidadrn6apv0jyd7b"; depends=[BiocGenerics Biostrings dplyr forcats Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; - CelliD = derive2 { name="CelliD"; version="1.4.0"; sha256="0697cfm9mlxk12acxxz68rng8niavmf42qlrkd8063k9kkzzh01q"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; - Cepo = derive2 { name="Cepo"; version="1.2.0"; sha256="08bpddpkagp9yzb65j3caf740vndnk399rm21f32qvbq803y0lp5"; depends=[BiocParallel DelayedArray DelayedMatrixStats dplyr ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CexoR = derive2 { name="CexoR"; version="1.34.0"; sha256="1sph506rwc4p25ar6km7yvg11aj7clk4bjncnlb75fynrv9zsarw"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - ChAMP = derive2 { name="ChAMP"; version="2.26.0"; sha256="1ck4pn24q222k4bhv4ngimzwyzgkf7a0nw9svhcmv91ys5h4lhhj"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; - ChIC = derive2 { name="ChIC"; version="1.16.0"; sha256="17az2nhccji8qjllvr5adzb8sqr15rhc4lg0iq52gmn6w7f7vrlz"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors spp]; }; - ChIPComp = derive2 { name="ChIPComp"; version="1.26.0"; sha256="06q34y59gf1iz0rs7y5x8ndy1wa95j65rfmz37aym5c46ijqsnq0"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; - ChIPQC = derive2 { name="ChIPQC"; version="1.32.2"; sha256="1c7yi0ga6fbw7903aakgkvm9048a9yndmlg7sn15i2pjrvwql8ms"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; - ChIPXpress = derive2 { name="ChIPXpress"; version="1.40.0"; sha256="1w8kvpvvwh7bjpk4672060vz0nn6ya0lm40k97grss1i4kmv7zna"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; - ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.18.0"; sha256="0vi7qngbyss7h6zzbqv5x31x09pnwkrhxgfsbmhazz6wczmwkcix"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; }; - ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.20.0"; sha256="1r4s8awvwwj1g33jpnzfxji23mfy0chkhi14i0ml5sh090xijpaz"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.30.1"; sha256="0a26glldxczcfymjvd45gv5m4hympziivm6wwx4ab9wld7n43l8y"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; - ChIPseeker = derive2 { name="ChIPseeker"; version="1.32.1"; sha256="0l2514wvlc8q7n1zjzfrghdg372sp73z39204bkif3g6pdkcvbcf"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggVennDiagram gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - ChIPseqR = derive2 { name="ChIPseqR"; version="1.50.0"; sha256="09z03ym6iqllj007558pijksjz6bqizrq8r5y1s9f12919szydsv"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; - ChIPsim = derive2 { name="ChIPsim"; version="1.50.0"; sha256="1rjh61721pxm3r0zh1jpk65f2ll7yyhk7d92hvp4hjmq8283xwsh"; depends=[Biostrings IRanges ShortRead XVector]; }; - ChemmineOB = derive2 { name="ChemmineOB"; version="1.34.0"; sha256="1cxblrisvqmrng5zvsm2x9g2rjl088s9jmrxxapgbf5zxdv1h1lb"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; - ChemmineR = derive2 { name="ChemmineR"; version="3.48.0"; sha256="1nri4zkc9lp1mqgsi0h58486vixwiv2989b6pmx2aj5c3575i0ma"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; - Chicago = derive2 { name="Chicago"; version="1.24.0"; sha256="13vzxmvxpc3r9gii37zvhhr5nbnaggrva97g6m2n02qn9daf6vmm"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; - ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.50.0"; sha256="1k7w5dlq5wa87rnqizvpr1pj3dx4l1ja6fls0691793ag337av0l"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; - ChromSCape = derive2 { name="ChromSCape"; version="1.6.0"; sha256="0hvk0lpslmlbim3dlr8rngp6ggr8chn2wbx344mf71hy48qyvarh"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges gggenes ggplot2 ggrepel gridExtra IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist SummarizedExperiment tibble tidyr umap viridis]; }; - CiteFuse = derive2 { name="CiteFuse"; version="1.8.0"; sha256="19l1splp6364wfmddxxpj2zlq30frglzcrfs3xhkrai2yfx2cnmy"; depends=[cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap propr randomForest reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; - ClassifyR = derive2 { name="ClassifyR"; version="3.0.3"; sha256="1a24i413v2cvmcf9f20gdvdkvwjx2yvlhbiasiwnmflb0p95n48m"; depends=[BiocParallel dplyr MultiAssayExperiment randomForest rlang S4Vectors survival tidyr]; }; - Clomial = derive2 { name="Clomial"; version="1.32.0"; sha256="0l1z45yp02hqjrrbyggk78fcm8g25sgdqsy4z2s4b2phrjh8nlc2"; depends=[matrixStats permute]; }; - Clonality = derive2 { name="Clonality"; version="1.44.0"; sha256="08z691r97krlzxwzcfhqkcpjwiacdxlfds1g4nzzi680zmvrdb4n"; depends=[DNAcopy]; }; - CluMSID = derive2 { name="CluMSID"; version="1.12.0"; sha256="0g9ml6dw5flcjlqjr4y33dy17hz2g9r7kavhywzgzh4167ppi0vh"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; - ClusterJudge = derive2 { name="ClusterJudge"; version="1.18.0"; sha256="0aw6dpqb8ky6in6a7is6fjjhng74vzqfirrvx4f7pvhj3hcmq22i"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; - ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.24.0"; sha256="1njqcwlbxfb0xc9jyxli3hyq5fjivvhklhvxqcr4aqg9as577qad"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; - CoCiteStats = derive2 { name="CoCiteStats"; version="1.68.0"; sha256="1agaxkxzgxfz7ycyjdmkfm1r21lhamkm7y7k7nxqkwpdz8rxg45y"; depends=[AnnotationDbi org_Hs_eg_db]; }; - CoGAPS = derive2 { name="CoGAPS"; version="3.16.0"; sha256="0ssq59pz0jfdpzj5dhh5bri6iffalhrgvl330v0q0zbj854fagm3"; depends=[BH BiocParallel cluster gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CoRegNet = derive2 { name="CoRegNet"; version="1.34.0"; sha256="16vqv6nc59jwyprhbwvlcmzya3837kimaplj0h09qmch9dr50yrb"; depends=[arules igraph shiny]; }; - Cogito = derive2 { name="Cogito"; version="1.2.0"; sha256="0sahx7cdqqnpzwb0164c84xwr246aiv4jdv9b07mw3k4s45z3h37"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - ComPrAn = derive2 { name="ComPrAn"; version="1.4.0"; sha256="0wwx025sv07h4xf3nvvqijvyca5mwdb8vsb8kvp4g0rxngc6jm30"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; - ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.12.1"; sha256="0b4p3ijhdcydfp0j58xlb5dn7d3m2x420n91rl9diqpg4r2gl0s8"; depends=[circlize clue codetools colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; - CompoundDb = derive2 { name="CompoundDb"; version="1.0.2"; sha256="1lwl4n9zm196l8dc5wdp4xl1h5dncbswqsninzzdqjrdwbpflkfz"; depends=[AnnotationFilter Biobase BiocGenerics ChemmineR DBI dbplyr dplyr IRanges jsonlite MetaboCoreUtils MsCoreUtils ProtGenerics RSQLite S4Vectors Spectra tibble xml2]; }; - ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.60.0"; sha256="1021cix4mr9qsafskw4kk1l3wdzx9pk2gcwjifz6f4zqxss9v07p"; depends=[ALL Biobase cluster]; }; - CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.12.0"; sha256="01sxmgsjrwhg8j7gckmcjwjy0yfbhw2rnww8z4hk0ig5vcb8g778"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; - CopywriteR = derive2 { name="CopywriteR"; version="2.28.0"; sha256="1k11kvam96hpg71hz2n9cfzizmb7d1bmq5zfvm34s7fn09is60xb"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; - CoreGx = derive2 { name="CoreGx"; version="2.0.2"; sha256="06wd9z8bgccxxxyipv30sgc2cxqnr1fmlpr3c11bqzaxp2g42y0a"; depends=[bench Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; - Cormotif = derive2 { name="Cormotif"; version="1.42.0"; sha256="0ww39z987ig23sn9w2m7jd6rv3njiyslnzcxxzi6gbqy0dax8n93"; depends=[affy limma]; }; - CoverageView = derive2 { name="CoverageView"; version="1.34.0"; sha256="0mh66l4yh6rpd1r7qbqwh5jkklqyvpfiap0zcqhz9kimssm2pbbp"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - CrispRVariants = derive2 { name="CrispRVariants"; version="1.24.0"; sha256="05hb0z6zmi6vxn11l5cih7ja92362v6idzwiwjk67dk4rrk273va"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; - CyTOFpower = derive2 { name="CyTOFpower"; version="1.2.0"; sha256="0dkz6wihnlvmrbjvw1rigcm5mff9vds0izqhcr4507cmvclw6984"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; - CytoDx = derive2 { name="CytoDx"; version="1.16.0"; sha256="0rk3ksgycwxagkyvl3qm0sbcrzjwlmll9mrhiwyj6n3divw2qg81"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; - CytoGLMM = derive2 { name="CytoGLMM"; version="1.4.0"; sha256="04k9gz1rbz2rkkdcn1g1ya6dcjslk4h8427dmy9mkz58nvyjg1ya"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang speedglm stringr strucchange tibble tidyr]; }; - CytoML = derive2 { name="CytoML"; version="2.8.1"; sha256="01yzdljpyq92bv318b5qs29f190226zwbqjnckvxmbb0k8m7s5hw"; depends=[base64enc BH Biobase corpcor cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite lattice openCyto plyr RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib RUnit tibble XML xml2 yaml]; }; - CytoTree = derive2 { name="CytoTree"; version="1.6.0"; sha256="1dsdhwjkd3ngnw50fs6vz048afk47r95vhi0wqj8sip11nhndkd8"; depends=[Biobase BiocNeighbors cluster destiny flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; }; - DAMEfinder = derive2 { name="DAMEfinder"; version="1.8.0"; sha256="123ra94bij0m45j2fzqr7fjipj4ld9kgk0kir1zfdbbd5h8h4mdf"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - DAPAR = derive2 { name="DAPAR"; version="1.28.5"; sha256="1z7p6h1j76k5dhqd1fs1swy2iyjh79h50nlagkdbxfpcc9vcfa3z"; depends=[Biobase DAPARdata foreach highcharter MSnbase]; }; - DART = derive2 { name="DART"; version="1.44.0"; sha256="105f3awf9dxkmrqgxjqzsragvhavfnygzgggi0mgq330ybmmp1as"; depends=[igraph]; }; - DECIPHER = derive2 { name="DECIPHER"; version="2.24.0"; sha256="045q2bfzgq1yzhyrzvrhrnmlpka4gikrajxxwv05szksy5nvp7q5"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; - DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.16.0"; sha256="09a967x1rnv7byjwh29ngjhs67rgg27zblmlzx6pyqlwy5jsp89d"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; - DEFormats = derive2 { name="DEFormats"; version="1.24.0"; sha256="1y6z5zvqmcrsl184skmlryi27s6511xas0nr117mz1g7skd5j2f4"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; - DEGraph = derive2 { name="DEGraph"; version="1.48.0"; sha256="0jdz7snssfiq9rv48irqsxzsgw9j0276wgvp61fpp37av4hp1dh2"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.32.0"; sha256="0lgz1zyy3dn1nhjkn9sp0bs6psrnvkli74y1aixrmq8wmq8dq526"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; - DEGseq = derive2 { name="DEGseq"; version="1.50.0"; sha256="1pjyxhfbm03dmq2hlh2ndr9hr9q8mc5skyraywnhk7spa59vz11f"; depends=[qvalue]; }; - DEP = derive2 { name="DEP"; version="1.18.0"; sha256="019brs6jspc32ax6gj0l9kqi2ih79jsgwin4akfl80pyz83rr7j6"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; - DEScan2 = derive2 { name="DEScan2"; version="1.16.0"; sha256="0hqj9vp8pqfn75yzn3njfns4ls5fvryk483fn2qfmh30cf38flsn"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; - DESeq2 = derive2 { name="DESeq2"; version="1.36.0"; sha256="06mvb0jqn2fg96wfwspv0kzpa8xpimzaldrcy8m2d4yk76xwsdr7"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - DEWSeq = derive2 { name="DEWSeq"; version="1.10.0"; sha256="138j21nph0nzn69qs1gqpwqv6hx3a75rbm5k8p5xaaii3jr5jf1w"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; - DEXSeq = derive2 { name="DEXSeq"; version="1.42.0"; sha256="1dzx9mvm8pvcrwr88rin3flnpmzp3vq8mvspx9s8virqhv1102am"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; - DEqMS = derive2 { name="DEqMS"; version="1.14.0"; sha256="04b35mhsz87dfj53clgxrb7igkyv41hqmblb4429l68l55wsxhp6"; depends=[ggplot2 limma matrixStats]; }; - DEsingle = derive2 { name="DEsingle"; version="1.16.0"; sha256="0gw2zbq910jnn1pdpc5sgvvfmvg06hximz1qnvvmv9pb8g68r0zk"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; - DEsubs = derive2 { name="DEsubs"; version="1.22.0"; sha256="06vjby0wpaczaw9bj2g2inylfnw92acrqgpadr70q458v1kpshs5"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; - DExMA = derive2 { name="DExMA"; version="1.4.5"; sha256="08pxd01x829v6a20y2lvdsbmhq2as1c5pnsyzcjbpmb3d73aad70"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr RColorBrewer scales snpStats sva swamp]; }; - DFP = derive2 { name="DFP"; version="1.54.0"; sha256="19xjvfymjclnd0ck7n7al3f54s7f8z3aszi35i0cavr7xj3cgrj5"; depends=[Biobase]; }; - DIAlignR = derive2 { name="DIAlignR"; version="2.4.0"; sha256="0mh27n8vsnsv10mq8jcslspyq86sfvwwgn8iib5w3f7qb47w5d7r"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; - DMCFB = derive2 { name="DMCFB"; version="1.10.0"; sha256="0wka5s820k0vfw87dfycnkbr3c41wm4rmylwnkm8c0azjda8n126"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; - DMCHMM = derive2 { name="DMCHMM"; version="1.18.0"; sha256="146b7568ckgcwg1r7gh6802vbfnha8a2b0kssxa4hf8vfd61a7mj"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; - DMRScan = derive2 { name="DMRScan"; version="1.18.0"; sha256="0gmfmmg7hs4qkinkypcxnk5ixylz47hb0z5x9pyd7jx3pldpld3m"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; - DMRcaller = derive2 { name="DMRcaller"; version="1.28.0"; sha256="12rdw3l2vjms6z9n7nlljnaf91hkfcvyv3f1vjsxkdvl91kj6arn"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; - DMRcate = derive2 { name="DMRcate"; version="2.10.0"; sha256="0l0fz89x1nxjszsdz9zdqrdz8jn9w22c3fasz3ach75fawfdznjv"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; - DMRforPairs = derive2 { name="DMRforPairs"; version="1.32.0"; sha256="14z01pnvg3v15cmdgrb216hc7yz2wkpb6dqj7a4bsrfqpbjy021s"; depends=[GenomicRanges Gviz R2HTML]; }; - DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.12.0"; sha256="07q6grnzpb5mmqidkd6dv95jflvxzzzvdyw5591is05px7if96q4"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; - DNABarcodes = derive2 { name="DNABarcodes"; version="1.26.0"; sha256="0n2qlvpcjhrxr3br27gz9vhwcpf7sn6g4xdjazvvi3gqcgk90xc6"; depends=[BH Matrix Rcpp]; }; - DNAcopy = derive2 { name="DNAcopy"; version="1.70.0"; sha256="10bh4p8nbl84rfngsm3bi9w542m159kff95f8c2hvjcxv5yw7iwc"; depends=[]; }; - DNAshapeR = derive2 { name="DNAshapeR"; version="1.24.0"; sha256="0qayysdkifa7dpin6a64zqp0mfvfxj2z0g1vcp757jci2w903b6g"; depends=[Biostrings fields GenomicRanges Rcpp]; }; - DOSE = derive2 { name="DOSE"; version="3.22.1"; sha256="1mch26kddrhhzgi4bssnyy7bvdhprrncmvxl6zn1cq7g07p5765i"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2]; }; - DRIMSeq = derive2 { name="DRIMSeq"; version="1.24.0"; sha256="1dph483ij43ayw0z5dbnp6gwp53ka7k5si1hp3miac7z8dqzv94l"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; - DSS = derive2 { name="DSS"; version="2.44.0"; sha256="12l5b3h9jd2ld6g4vncxy70a8vfi37byl5k85ix61ir0rbcqf6jn"; depends=[Biobase BiocParallel bsseq matrixStats]; }; - DTA = derive2 { name="DTA"; version="2.42.0"; sha256="13x7z2zgxcnz8lpgdnsm5rp6j8yj6fkm03amymlnzihrqjdjpzw4"; depends=[LSD scatterplot3d]; }; - DaMiRseq = derive2 { name="DaMiRseq"; version="2.8.0"; sha256="1lyj8ic87bh8bwwm64rc5wj6sargf81x4x8bilff0gisq35w981g"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; - DeMAND = derive2 { name="DeMAND"; version="1.26.0"; sha256="0dwn6p24gc4ix8258w8xvc32ldhh6w3q4drzmm7nwacfk9rjqi93"; depends=[KernSmooth]; }; - DeMixT = derive2 { name="DeMixT"; version="1.12.0"; sha256="11x6s6dsnh05l853218b2528adjdy4pbgf95jclibz9gx5nf4hnf"; depends=[base64enc ggplot2 KernSmooth knitr matrixcalc matrixStats Rcpp rmarkdown SummarizedExperiment truncdist]; }; - DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.38.0"; sha256="10smk88srxm58hli0fhkdfd6l5z02q58xc9mww39gkn71y0127k6"; depends=[ggplot2 limSolve pcaMethods]; }; - DeepBlueR = derive2 { name="DeepBlueR"; version="1.22.0"; sha256="19mxag9pzaa4bsh9plq4zrky3fpai6rangi01p6yrkxpjnnhrwqq"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; - DeepPINCS = derive2 { name="DeepPINCS"; version="1.4.0"; sha256="06kxdw1cl2i3jqyfsk3cxppdhqcdmqqfisqn7pyidacjwjm16rvg"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; - DegNorm = derive2 { name="DegNorm"; version="1.6.1"; sha256="0332mw9b0qvrnsvshjpcznglz406dqk44l7mjcrb1995ddld3221"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; - DelayedArray = derive2 { name="DelayedArray"; version="0.22.0"; sha256="11id63qza9dxl1364gllqafxmx25a0q22jv5q8h709bgc3f0grqy"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Vectors]; }; - DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.12.0"; sha256="1nja5h0vxl2i34dhag7gyjdhyaisqagn11004i65pwbx5fmwq58d"; depends=[BiocGenerics DelayedArray S4Vectors]; }; - DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.18.2"; sha256="0zc7560d5lizkfai7yf4is246mjw8n5j2wrrikrrv3fabby44h7x"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; }; - DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.4.0"; sha256="13g4dfsv4d5fdp8flxy7p7sc5l9jiby97zixpkda8q1smg2ggr93"; depends=[BH DelayedArray dqrng Rcpp]; }; - DelayedTensor = derive2 { name="DelayedTensor"; version="1.2.0"; sha256="1paciar5cm61gx894awwxb7gzqnyiwmsfinfijff2qx210l0yz51"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; - DepInfeR = derive2 { name="DepInfeR"; version="1.0.0"; sha256="03qvgk20dgxa95gkv2ya2dibiwshda3ssl5f95x5nn06lfgzk6m0"; depends=[BiocParallel glmnet matrixStats]; }; - DepecheR = derive2 { name="DepecheR"; version="1.12.0"; sha256="0rixczdds5gpac50wap6s68kmpdj4208l38gcihkrysz5frbvqjp"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; - DiffBind = derive2 { name="DiffBind"; version="3.6.5"; sha256="1c82szcbbai9yldzby90p0q7qi4n9g1wd2wl7h4imyqyj2n4yagx"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; - DiffLogo = derive2 { name="DiffLogo"; version="2.20.0"; sha256="08dr3ah0gakdkv133ipw1ib2w1p84hild0s4y9kp8z51qg0zk7mn"; depends=[cba]; }; - DifferentialRegulation = derive2 { name="DifferentialRegulation"; version="1.0.7"; sha256="1q33zyhqc0dxfip5pcn4m5rvr4nivzic4wshdh8sk1hwpviwd90r"; depends=[BANDITS data_table doParallel doRNG foreach ggplot2 MASS Matrix Rcpp RcppArmadillo SingleCellExperiment SummarizedExperiment]; }; - Dino = derive2 { name="Dino"; version="1.2.0"; sha256="1rcll2y034v1n183v819brazr6crr73klp8qmkq51p7jpsvx1450"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; - Director = derive2 { name="Director"; version="1.22.0"; sha256="1s6yg90ai37cvkqq7gs394bxd70l85mgz36y6gyjv1bzbc298am8"; depends=[htmltools]; }; - DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.38.0"; sha256="15l0h2qz80lmrm5rva3v7lkgddn42igyxxwims57zwpwyhrk9bmx"; depends=[BiocGenerics IRanges S4Vectors]; }; - DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.12.0"; sha256="1ld3515clkmxnwyn3z44n7h1bsk3qyxlf0v0fybv5k78rmkrjamv"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; - DominoEffect = derive2 { name="DominoEffect"; version="1.16.0"; sha256="0iyd3my4kqs2cj284gym59ldq49jhga67z95qwsh1kyjapqiqjz9"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; - Doscheda = derive2 { name="Doscheda"; version="1.18.0"; sha256="116s7s81yxkc0igfy79fqbn6wn1mvd73c5qx1g86vc1mss3nw7k0"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; - DriverNet = derive2 { name="DriverNet"; version="1.36.0"; sha256="0lpcmx02xnmxrnkwssjgb9pd7jmshkpqslama920d905lrxydp9c"; depends=[]; }; - DropletUtils = derive2 { name="DropletUtils"; version="1.16.0"; sha256="1zq8yhix70a63piffia228zbia9nrzv85lga77flix4p836qmcww"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; - DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.38.0"; sha256="0q1k4pjfl7nvb1g97iraqfan59idwwp0775ndk99qv8lcmnn032h"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; - Dune = derive2 { name="Dune"; version="1.8.0"; sha256="0xbhbjjhh82k7vblb3b2afxyiqqi17l225zwsycjqpvb2bqpybpc"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; - DynDoc = derive2 { name="DynDoc"; version="1.74.0"; sha256="0yqidldl1n93wcdr7n6k18hy602r04b2plkblcvbvi0rlpwcggxi"; depends=[]; }; - EBImage = derive2 { name="EBImage"; version="4.38.0"; sha256="1vcx45bw36k9daw9dywj5bz77jmqk4gjfwsym8ajjnc1jmlq20si"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; - EBSEA = derive2 { name="EBSEA"; version="1.24.0"; sha256="104534fl41p9qwi2md78prw4wdzd0c309j3pvq225z4n38fzs8gp"; depends=[DESeq2 EmpiricalBrownsMethod]; }; - EBSeq = derive2 { name="EBSeq"; version="1.36.0"; sha256="192xl9fwsh04w563yk33mfl303d1kqby2ssbqkckqsdr4jb7d57y"; depends=[blockmodeling gplots testthat]; }; - EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.30.0"; sha256="0530imykm1lpisa1ksmw5kdndjxcnj2nyvca6zpjfqw3wdj0s24q"; depends=[EBSeq]; }; - EBarrays = derive2 { name="EBarrays"; version="2.60.0"; sha256="027zarnpxpdnyl877swp5ypxj7zvq0cjp2q2xs6g6yn5dpqjvxxk"; depends=[Biobase cluster lattice]; }; - EBcoexpress = derive2 { name="EBcoexpress"; version="1.40.0"; sha256="07rkar9yh06z3i7v4din5bwpy34a01xdj78sm3r4k64z4xh4zglp"; depends=[EBarrays mclust minqa]; }; - EDASeq = derive2 { name="EDASeq"; version="2.30.0"; sha256="1qnpbmhxvqsma7ihi6yp3ad962xcanlxald84k2szh011ipxj7ws"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; - EGAD = derive2 { name="EGAD"; version="1.24.0"; sha256="1w8pfkb9capppb3m2fhhy84s1aghf5vp90zlmlnb0mmvxcs6i7im"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; - EGSEA = derive2 { name="EGSEA"; version="1.24.0"; sha256="09z5247djg4yif8kvkzqady85r7k7xnls7n3hmpjld6rxb00qyrn"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; - ELMER = derive2 { name="ELMER"; version="2.20.0"; sha256="1zffwm9m7mixnfc912f0g4qvnzljr9d13zrfg7c38p35qlkdi2wp"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; - EMDomics = derive2 { name="EMDomics"; version="2.26.0"; sha256="14mn3p3mq0hcgr5ynf2jq09y7y1sykcq86hpsnbhgq56gf2v3gzg"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; - ENmix = derive2 { name="ENmix"; version="1.32.0"; sha256="09lznn1ajlpn3rr9gcs9v8c370cdk1gcfjpb1cmp68gc22333ql7"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; - ERSSA = derive2 { name="ERSSA"; version="1.14.0"; sha256="0g06svlww704z65jk9w747gs8jv6h75b9d096an0qi5zqp2s1lh4"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; - EWCE = derive2 { name="EWCE"; version="1.4.0"; sha256="19mq43s0rfzgy793cf7l5a4vgss3s2l0nhnsfgdsrxv4gy6nfgnq"; depends=[BiocParallel data_table DelayedArray dplyr ewceData ggplot2 HGNChelper limma Matrix orthogene reshape2 RNOmni SingleCellExperiment stringr SummarizedExperiment]; }; - EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.24.0"; sha256="04r9fcxaqajhzdbjhi9dhv8pppqlprc0g5h2spf0d798if51f2ck"; depends=[]; }; - EnMCB = derive2 { name="EnMCB"; version="1.8.2"; sha256="1kna7s4rz5mlaj7vwc0mrzaziadvai7zq8ajiy4jya8xw78llyw4"; depends=[BiocFileCache boot e1071 ggplot2 glmnet igraph Matrix mboost rms survival survivalROC survivalsvm]; }; - EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.14.0"; sha256="1ghsmfyhb2wa6vm5zhpjxcbmlnwhccahjajgpccbn85lq2203lz2"; depends=[ggplot2 ggrepel]; }; - EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.26.0"; sha256="1960amh4pwnim6didgjqp6f3456ddndcsz2ghvpc0pv8v832phnl"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.26.0"; sha256="1bqq2jhlqm1vykrlr65z7yrvai406wymhrz0kallyhvgqwjbzwl3"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; - EpiCompare = derive2 { name="EpiCompare"; version="1.0.0"; sha256="0ca4xh0slzhdbji5ffqgjvd9vgaypmgl412vksc8n1jg6q7zx0xm"; depends=[AnnotationHub BRGenomics ChIPseeker clusterProfiler dplyr genomation GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db plotly plyranges reshape2 rmarkdown rtracklayer S4Vectors stringr tidyr UpSetR]; }; - EpiDISH = derive2 { name="EpiDISH"; version="2.12.0"; sha256="020jimk1qy6r62z6pibsi9nyjxpfw0ikn1h136pn13b42rrrmjk4"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; - EpiTxDb = derive2 { name="EpiTxDb"; version="1.8.0"; sha256="12xa3h1j7jp1h27dz7hqfsbx3h4p76r5fm1bvspf52w8823qwpds"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; - EventPointer = derive2 { name="EventPointer"; version="3.4.1"; sha256="0fykvpbi4jr9j5xkbia7gj7yq3xf2nfahasa44i4yswqr7d82bbl"; depends=[abind affxparser Biostrings BSgenome cobs doParallel fgsea foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; - ExCluster = derive2 { name="ExCluster"; version="1.14.0"; sha256="1vxkhll9zmv4w13xhazhmpbfjsc47g4sz2hizci491hyh41yq4jx"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; - ExiMiR = derive2 { name="ExiMiR"; version="2.38.0"; sha256="06k8f62c9ssbmqgx2gyxhy5cx8mryx3d5mzrwjlq35jbnnvdqn8c"; depends=[affy affyio Biobase limma preprocessCore]; }; - ExperimentHub = derive2 { name="ExperimentHub"; version="2.4.0"; sha256="11hna8vrm1az1zk7pw2dv0wh84sd0hw2bi55w40hqvs36csb7lkl"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; }; - ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.22.0"; sha256="07n2igb5sva2l323d7p1xqd7520a4fpfan4y5q0l2nr8f3azgfdy"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; - ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.6.0"; sha256="0j4qhqpgh925yjgc2cbrqh0vfc0wih4hvva4645cwmrd3hb09hzf"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.8.0"; sha256="152m93d0z4z5wksfbizly7dsr7v9a6c4qar540swcr4qba39p6mm"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; - ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.24.0"; sha256="0m9hjxdlndr00zqv8xh817n9bnf49smgdw0jc48i6rlmpnr3namx"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; - FCBF = derive2 { name="FCBF"; version="2.4.0"; sha256="0kymmx151f0n42h6b8m07y3fir95a29bf76hskkbix18x62ak570"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; - FEAST = derive2 { name="FEAST"; version="1.4.0"; sha256="050m7l8wm5c9gzj5m9pd472l29affj5zzwgnjscb4gi9albhbs1r"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; - FELLA = derive2 { name="FELLA"; version="1.16.0"; sha256="0j7h8xaxa0wkpbfwq17qgsp3rn45fkjv4fc3ca01y1kvj219a3vw"; depends=[igraph KEGGREST Matrix plyr]; }; - FGNet = derive2 { name="FGNet"; version="3.30.0"; sha256="10v82y7gmxxq1drw1w51r175ada5igy1ixj2m6y6kk8xldiy1ngr"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; - FISHalyseR = derive2 { name="FISHalyseR"; version="1.30.0"; sha256="12qrqh9xm3zd2wlkda4n3h4v057hq3bgqzz8z25wnhxil6qyqb43"; depends=[abind EBImage]; }; - FLAMES = derive2 { name="FLAMES"; version="1.2.2"; sha256="1dk1pc3vhk2jgmmhkq9q0jy1s1ad5zxzgmnr6nx3x7wbaibb5rp2"; depends=[bambu basilisk BiocGenerics Biostrings circlize ComplexHeatmap cowplot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gridExtra igraph magrittr Matrix RColorBrewer Rcpp reticulate Rhtslib Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment stringr SummarizedExperiment tidyr withr zlibbioc]; }; - FRASER = derive2 { name="FRASER"; version="1.8.1"; sha256="1bixarfx0ykzns4w5c556l8q2lscnxmmdbl292g9q7k9qiw39p03"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; - FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.32.0"; sha256="14wskfc350zrna1ng8wkyb91y3h01jhk93ajw3if04nkghav193a"; depends=[fda MASS]; }; - FScanR = derive2 { name="FScanR"; version="1.6.0"; sha256="0117fgbmig6zaik5j7axcw33rx2pjwhgla751sr4zi990a9p6igb"; depends=[]; }; - FamAgg = derive2 { name="FamAgg"; version="1.24.0"; sha256="0pzqy8rx7hyz93v8gh4qf861axwidxwiv3w9i8j7g796mdmy66my"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; - FastqCleaner = derive2 { name="FastqCleaner"; version="1.14.2"; sha256="0vna7kmfgn6m0irrp7aqgvswvfmxcd8bjpl6l35mwqq2rm8h25gf"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; - FilterFFPE = derive2 { name="FilterFFPE"; version="1.6.0"; sha256="0x76a382lw0j06h8hlq2vrawnydjngn9w0dhymyrx94jkmsl15wl"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; - FindIT2 = derive2 { name="FindIT2"; version="1.2.3"; sha256="0fj6csbxx6dfcd8fhsiff04cagb2yyg79h8wklqqm0dr7agbfaj9"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; - FitHiC = derive2 { name="FitHiC"; version="1.22.0"; sha256="0iv14yx3g7shzl8qrjknyxbmiylj51sbd1wzr1ff9lc5shgl55kq"; depends=[data_table fdrtool Rcpp]; }; - FlowSOM = derive2 { name="FlowSOM"; version="2.4.0"; sha256="0balsds5mm981cqamdjv3ndq1y9arharisd6f2lrpkzgvwawa645"; depends=[BiocGenerics colorRamps ConsensusClusterPlus CytoML dplyr flowCore flowWorkspace ggforce ggnewscale ggplot2 ggpointdensity ggpubr ggrepel igraph magrittr pheatmap RColorBrewer rlang Rtsne scattermore tidyr XML]; }; - FoldGO = derive2 { name="FoldGO"; version="1.14.0"; sha256="1dwdppgawgc22qryc98p3ibamcn90871hgix1ad0p3zyhpvza9z5"; depends=[ggplot2 tidyr topGO]; }; - FunChIP = derive2 { name="FunChIP"; version="1.22.0"; sha256="1cc6yxizb8jxfin1pl0lxf6x0yxwvi0lr1pyg1v8a0842dv3zh1d"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; - GA4GHclient = derive2 { name="GA4GHclient"; version="1.20.0"; sha256="0mg6c1ygj732dpcqbv3ndh58z66msy7bp1rq95d3inj57ccw5fpf"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; - GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.18.0"; sha256="1gpls1wpd4rdhkwwmm81pv06sj2w6ravcsns2rgqaa4sp2pdsb8a"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; - GAPGOM = derive2 { name="GAPGOM"; version="1.11.0"; sha256="0sl97w5zx4zdrdbcwayqyvgxspaxpbils3mpsrim0zlspjrjcy6z"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; }; - GARS = derive2 { name="GARS"; version="1.16.0"; sha256="1v3ps3v2zsr4p2q5wvxa1wm9mnxkhc2d9sgsz841ld0rbqzw7fjl"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; - GAprediction = derive2 { name="GAprediction"; version="1.22.0"; sha256="08xhky97f5x6kakdavzpqdxp053nrjfjr51r4gkfvcv4xj4dypk0"; depends=[glmnet Matrix]; }; - GBScleanR = derive2 { name="GBScleanR"; version="1.0.6"; sha256="01wk8d1kbs7x26i2anxh8pjsvc9arr6b64qy4zzr32kwmlj0yvg7"; depends=[expm gdsfmt ggplot2 Rcpp RcppParallel SeqArray tidyr]; }; - GCSConnection = derive2 { name="GCSConnection"; version="1.7.0"; sha256="1psmw3825whyzvbzqpqksgcl09b6kfyb8k5vny6ljkjbac1jzvnf"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; }; - GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.6.0"; sha256="0qk8xyg06f71y4r1q1zpcj89irh9i6cd9z6nqlx635x8if84sh6d"; depends=[]; }; - GCSscore = derive2 { name="GCSscore"; version="1.10.0"; sha256="0cdhv2awcyg95cjwq088r9rsbmdi3vqnlnh0c74h7k2gjldl9r24"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; - GDCRNATools = derive2 { name="GDCRNATools"; version="1.16.6"; sha256="0zkw0g711g1w0dp75qwa3cfk3d8dfsp6v4f122j88xc1cjf5rarv"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; - GDSArray = derive2 { name="GDSArray"; version="1.16.0"; sha256="1j6a0xlrx4cjqsfcm1k1vapddi5v2q5h05b617i839l9cp0ggd1s"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; - GEM = derive2 { name="GEM"; version="1.22.0"; sha256="0vxpncvnqhgggy0is4lvgf29lgh307jkgz4zjjspdq9ds6y40l1i"; depends=[ggplot2]; }; - GENESIS = derive2 { name="GENESIS"; version="2.26.0"; sha256="1qn3x6j9lvyx130sx9wg7bxvacwbwp87x75inpxx9llc00p7sl9c"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; - GENIE3 = derive2 { name="GENIE3"; version="1.18.0"; sha256="0h3vnpnznb9rda8gfwp4cnd2mqsvs1vzmfx90dchn5pqaphz1k2l"; depends=[dplyr reshape2]; }; - GEOexplorer = derive2 { name="GEOexplorer"; version="1.2.0"; sha256="00lnrp07nv8hia77riy3p10iq5rsyjzlrq93l4ql6m2cxv2p4qdg"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; - GEOfastq = derive2 { name="GEOfastq"; version="1.4.0"; sha256="05s35fbzi2w3c4y11h144mf70i0rhbx1jwdz70ldyfa0ld3hbh89"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; - GEOmetadb = derive2 { name="GEOmetadb"; version="1.58.0"; sha256="12x2aabm2m1rv4s91h6vyq5q36i4i15lgh3bya3bjm80bfmxkfm3"; depends=[GEOquery RSQLite]; }; - GEOquery = derive2 { name="GEOquery"; version="2.64.2"; sha256="1cvkvq2haz831qi8w0gd3ayvxfxsl0z5klhki4gkfi9xqdv1gi9x"; depends=[Biobase curl data_table dplyr limma magrittr R_utils readr tidyr xml2]; }; - GEOsubmission = derive2 { name="GEOsubmission"; version="1.48.0"; sha256="0ml72djmli9qvq2c75nqq00q31lqcb64v8532vw4fk57cclmf76d"; depends=[affy Biobase]; }; - GEWIST = derive2 { name="GEWIST"; version="1.40.0"; sha256="0df1jm69krsr8y315mx93hjnmf4qpvnhbm0iz4j4920ra7g8wdp7"; depends=[car]; }; - GGPA = derive2 { name="GGPA"; version="1.8.0"; sha256="08p3k5dfkc2la5j99wbwswd7zhc4i4aynkmr3x561h6p59n31hnk"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; - GIGSEA = derive2 { name="GIGSEA"; version="1.14.0"; sha256="1v8f3slcx08kcba13aq68y4lmdprz71h33cm7masrcxs2iz839c9"; depends=[locfdr MASS Matrix]; }; - GISPA = derive2 { name="GISPA"; version="1.20.0"; sha256="1qpw6fwa15p6ccylb4hjfwjypy0waywp1yiwq3fwhdazg0pbzr9h"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; - GLAD = derive2 { name="GLAD"; version="2.60.0"; sha256="02amcicn07ywgmd4dkinw0wq6vi0yx45m0naycfgc6bszh78a05z"; depends=[aws]; }; - GMRP = derive2 { name="GMRP"; version="1.24.0"; sha256="0bkz9pj07gn5a2gfci0zl1932mkzcmm5cv9axaa0f8yavn4vy4i5"; depends=[diagram GenomicRanges plotrix]; }; - GNET2 = derive2 { name="GNET2"; version="1.12.0"; sha256="1s09cyhhfbi5p9bnp1wgpl94js65sp63z33bf795mm6jv460ibyy"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; - GOSemSim = derive2 { name="GOSemSim"; version="2.22.0"; sha256="1hp15pzd0m0g9f8kglyfsgjqxnvxcmm9022xnsrkzfvmj2yw14vd"; depends=[AnnotationDbi GO_db Rcpp]; }; - GOSim = derive2 { name="GOSim"; version="1.34.0"; sha256="0nl5fk7nxmha9sp7phmj9r6mxvg5v0p8l7pblrb34m40h3f27d96"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; - GOTHiC = derive2 { name="GOTHiC"; version="1.32.0"; sha256="0hnwqsa7pgxnmqrcrbn78mr647rzjs004xx2x5bbi9nbpirr04j9"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; - GOexpress = derive2 { name="GOexpress"; version="1.30.0"; sha256="164vr6hff42gym2rak37xnpz23d4ga20p67jxzw96bnynnzgaaxw"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; - GOfuncR = derive2 { name="GOfuncR"; version="1.16.0"; sha256="02vdfsjrqp0m06mfbspwkxjyqxfca0w1idgygpi1a9i5m4fqhwpk"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; - GOpro = derive2 { name="GOpro"; version="1.22.0"; sha256="04xgfmazi557r5qr9ginbfsqwvccpw7kds7kyvh6xxcy5kgnlbf0"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; - GOstats = derive2 { name="GOstats"; version="2.62.0"; sha256="121ly9vifarg8y7mc468571bbs0xv4sx6sflm5zcdqf0p83yvjrm"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; - GOsummaries = derive2 { name="GOsummaries"; version="2.32.0"; sha256="0wkal7hsfz9msf8j7975vkqqzv5x681c891zj1b4mfk6dvn5xffa"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; - GPA = derive2 { name="GPA"; version="1.8.0"; sha256="0z4qh88x7gvm02186mnl6bkhg1f5swqci30gzj27lj1kx700jsf3"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; - GRENITS = derive2 { name="GRENITS"; version="1.48.0"; sha256="09c6d8hcawc6ky0pjhvc5yvd7fj1a1bl8n4hcw72nyfgbf20hygi"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; - GRaNIE = derive2 { name="GRaNIE"; version="1.0.7"; sha256="1lvc78fbhbp4i6ix4bdmmlnzwma2n5w0v3099p1nghzwcl0jx7z2"; depends=[BiocFileCache BiocManager BiocParallel Biostrings checkmate circlize colorspace ComplexHeatmap csaw data_table DESeq2 dplyr forcats futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph IRanges limma magrittr Matrix matrixStats patchwork progress purrr RColorBrewer readr reshape2 rlang robust S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect tidyverse topGO viridis]; }; - GRmetrics = derive2 { name="GRmetrics"; version="1.22.0"; sha256="1qz2bj8wnp14mw5zm2207xk3zj98s2gk16fvhdzpy21y07irrx3j"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; - GRridge = derive2 { name="GRridge"; version="1.20.0"; sha256="16bra2nz4i4f40x2gfcky7ggz3alpvhwcbilv48r7nv4p6b31j8i"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; - GSALightning = derive2 { name="GSALightning"; version="1.24.0"; sha256="0p2k8k05283h7ls1aj5457ycqq46mxjjx7pmjijmj0kfzcmnqyv2"; depends=[data_table Matrix]; }; - GSAR = derive2 { name="GSAR"; version="1.30.0"; sha256="0b71l3hlg5zxf6y3yffbl785pprh66z89xx9gz9s2vb5rqkbqydb"; depends=[igraph]; }; - GSCA = derive2 { name="GSCA"; version="2.26.0"; sha256="0vrgzp4rc8y0amzjgqv3l77jqpbjgc5qdpijpqfm870fcjp1iqvi"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; - GSEABase = derive2 { name="GSEABase"; version="1.58.0"; sha256="1qhvgyg392fd98h2qnmfmhg7mil5hp9cy3qmkqs4x1bhpv1m978g"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; - GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.16.0"; sha256="19yvv82c2fvmjzv4rrfv19svsj2dm3pkvg78zjk7vs64y81ph5d7"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; - GSEAlm = derive2 { name="GSEAlm"; version="1.56.0"; sha256="1ybfd6b79bqv3rk986456y9hqmjkgibmpv43q9ivxqz1acyvj6v0"; depends=[Biobase]; }; - GSEAmining = derive2 { name="GSEAmining"; version="1.6.0"; sha256="19r923086qr400f4p2kfn4ii09q2k2pqg9k4r035b9afqgd0x91a"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; - GSRI = derive2 { name="GSRI"; version="2.44.0"; sha256="0z79l6m3z0ib9iy24hpiscmxasrx33y6swrdg0k1z48sdhy0gsf1"; depends=[Biobase fdrtool genefilter GSEABase les]; }; - GSReg = derive2 { name="GSReg"; version="1.30.0"; sha256="0g0j4bh9h8qvki84gcp2s6yn2hhc38219jzihmf9jpjl66k74gs0"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; - GSVA = derive2 { name="GSVA"; version="1.44.5"; sha256="09szzrgyjcx33yh2327s8w4xaarvavajsb19jfdgdxc1bs5yhzl9"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; - GSgalgoR = derive2 { name="GSgalgoR"; version="1.6.0"; sha256="1wi6ww5rycc2zxhnm83amzrh7ffripmiqklcmxisv6jqgr64adp3"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; - GUIDEseq = derive2 { name="GUIDEseq"; version="1.26.0"; sha256="1ar20zr3mjfqs7fvd323mdrxylvsjazn6si4d8ilgbpq4xhdv58a"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; - GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.6.0"; sha256="01bj6gh95p95imyvvzjylnw42rcrzw3x8z0q8x2cx42zqf45dqc1"; depends=[caret doParallel GA ggplot2 Matrix memoise Rcpp RcppEigen reshape2]; }; - GWASTools = derive2 { name="GWASTools"; version="1.42.1"; sha256="0a9k2dsaxp5szqm71qd3l5jq0aqnbgp7w5n8d7qiywlkfw4l8lwm"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; - GWENA = derive2 { name="GWENA"; version="1.6.0"; sha256="10cs5csg6dwqajsk461flq55siz6jfd90w5cyqdhyq4mcbv6zp1x"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; - GateFinder = derive2 { name="GateFinder"; version="1.16.0"; sha256="1wrx3rp1r4fjq8c56dk40izawzpsrmkrrdvivi67arx5pdjhjz30"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; - GenProSeq = derive2 { name="GenProSeq"; version="1.0.0"; sha256="0vmsjpdkfvq28bihmf47a2ihlfxzadjr5vm6clh25016rz0086pp"; depends=[CatEncoders DeepPINCS keras mclust reticulate tensorflow ttgsea word2vec]; }; - GenVisR = derive2 { name="GenVisR"; version="1.28.0"; sha256="1cr9f044vj4qfb050nsbnnr9bvz12p3fzvnag54na3j2yinvsq6c"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; - GeneAccord = derive2 { name="GeneAccord"; version="1.14.0"; sha256="0lpw3fxfwfhnymivvjh6na9ssqs7268543kpf5wximfcm7wy9mzm"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; - GeneBreak = derive2 { name="GeneBreak"; version="1.26.0"; sha256="0dw5r5zaxp0y2g626gsvwcqcaqf7lz8ajnca6n6k6krbng7nqpf2"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; - GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.42.0"; sha256="0jyxvsqm8gswbv2aky18hz2lc75l2l12yidhkqhv0c0rr3kxqvsv"; depends=[Biobase]; }; - GeneGA = derive2 { name="GeneGA"; version="1.46.0"; sha256="1xb7m5rzgycbp1w1wa022ksn5fskkvyh38ndg7a11nfk0lq1mxiw"; depends=[hash seqinr]; }; - GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.22.0"; sha256="1ccxwdjyk567i78xda40ycnpa9lnln9zc8r9k5njwizj9wma1fzy"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; - GeneMeta = derive2 { name="GeneMeta"; version="1.68.0"; sha256="1y0d65h40s68gmnw680a2ac1g6kmfh4zbgzff1dblh1k4lvgzir2"; depends=[Biobase genefilter]; }; - GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.38.0"; sha256="0yz0p9q3km71lji12p0bqa7zz6rcbrmw2c62im0bnrxmraw1l498"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; - GeneOverlap = derive2 { name="GeneOverlap"; version="1.32.0"; sha256="0nqwa3x9q1hl9nm06hqzzrn00rirc9kj6s320csjlf7x6rcidr93"; depends=[gplots RColorBrewer]; }; - GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.52.0"; sha256="0qgfjlahc93ijsz7m2i11xmkkkwnzddf4mi17l2cq6a14ykdlww5"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; - GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.40.0"; sha256="19q88wy0gmyyvc9ddq7dm6mqy5zh8kqpad1dz5ymvzq8663cldqa"; depends=[Biobase limma MASS]; }; - GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.16.0"; sha256="1ciflsp0i96ljh4xz1b1bbf6za4hd2swnykmp0wvgayxxcwxdwjv"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; - GeneTonic = derive2 { name="GeneTonic"; version="2.0.2"; sha256="08mq482px35a1b3cz64h8hlw2s4cabyddb1ly5hzbbgcqq9h18p3"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap ComplexUpset dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; - GeneticsPed = derive2 { name="GeneticsPed"; version="1.58.0"; sha256="0vbkbjyb9r5gsbkn3c28y3bicmn82r1bfsah6ww6pf539xzipbzj"; depends=[gdata genetics MASS]; }; - GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.32.4"; sha256="0z2bqr0zrl3r2kcqs72ny8p1psf8w1sgbr7qjjknxdv1qp8m2j7v"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.32.1"; sha256="09pg7822camyav5zvlpv360sj5gz8q1bhk528qa2da2qsz74a3cz"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; - GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.20.3"; sha256="09qjy79wvbahwyb2avvagp3pp4d2v3qr2balsjvg75g8j5fsy50f"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang tibble xml2]; }; - GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.4.6"; sha256="05q36bbcg2acr93bzcmd6vfxl442ig7rk0d0kmzhp33fbrrz8k3a"; depends=[Biostrings broom data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2 scales]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.48.4"; sha256="15kn5lmdqp7rsh2zlixj7ashsqnv50bs36hapw36qbaz9vgvim4v"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; - GenomicFiles = derive2 { name="GenomicFiles"; version="1.32.1"; sha256="06ycfna26klx27vvsnlpgv46bymfrc8z0zkpag7nm4m23153ivkz"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - GenomicInteractionNodes = derive2 { name="GenomicInteractionNodes"; version="1.0.0"; sha256="064mvbgrhf098pyqabqdi70yskri5pa3fd1yylzwmabx3g7wvsw8"; depends=[AnnotationDbi GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges RBGL S4Vectors]; }; - GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.30.0"; sha256="0aph1hja5vfprxs3jl4zd1inhvih6m3v1p3jkm6w7xpj3jzvmgbx"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; - GenomicOZone = derive2 { name="GenomicOZone"; version="1.10.0"; sha256="1dhrlibbs41rl97rspnn4sc77ic5rv7l23vgm4qmgq37lv1crpdk"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; - GenomicRanges = derive2 { name="GenomicRanges"; version="1.48.0"; sha256="088rv1aclwq265pdg4hmks73nl0125vk0vigyi44n3djkrdx48yn"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; - GenomicScores = derive2 { name="GenomicScores"; version="2.8.2"; sha256="12rcxw69an1d5q7ar58xy8s871l47imw2nm08j054ivxslx8597j"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array httr IRanges rhdf5 S4Vectors XML]; }; - GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.4.0"; sha256="09hfb3j1v4b2as4vwy87h5jqi4kzz179k4lzvw4csr0yvs80f3ks"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr plotly S4Vectors SummarizedExperiment]; }; - GenomicTuples = derive2 { name="GenomicTuples"; version="1.30.0"; sha256="0mjw7vvw28lgb7yrsymnixambnwasq79hfbcc3rw24c0srad6hsw"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - GeoDiff = derive2 { name="GeoDiff"; version="1.2.0"; sha256="0s0bcx6j7varibkv5gwf29kld8znzz0dlbsrip6qxg5w23wwdhcz"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; - GeomxTools = derive2 { name="GeomxTools"; version="3.0.1"; sha256="1jj4jsh4z514lkdzd7isfhsg54lr6fkvqacdmizyvbcpiiccgw6v"; depends=[Biobase BiocGenerics data_table dplyr EnvStats GGally ggplot2 lmerTest NanoStringNCTools readxl reshape2 rjson rlang S4Vectors SeuratObject stringr]; }; - GladiaTOX = derive2 { name="GladiaTOX"; version="1.12.0"; sha256="15s1qm5519ijr4h2krbfgix1768yb4jjhx9py57px6v6mwg7ahks"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; - Glimma = derive2 { name="Glimma"; version="2.6.0"; sha256="1k17ay09vhb2hakg1vrgvpp1zliavlj7cdkxaal162bc3v8pyvyz"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; - GlobalAncova = derive2 { name="GlobalAncova"; version="4.14.0"; sha256="01w50kl0cfif8d773i4xx70p8wp337fkx6kclxgvrgd7bmv286v4"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; - GmicR = derive2 { name="GmicR"; version="1.10.0"; sha256="02h92xlziqjva283crbgjlffii00bsmbldknzsj38fksjp43dih9"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; - GraphAT = derive2 { name="GraphAT"; version="1.68.0"; sha256="1s5qcykfprqwqbhmlp64yxmjaxskwrxgh93j4idzgp71md1k5sf1"; depends=[graph MCMCpack]; }; - GraphAlignment = derive2 { name="GraphAlignment"; version="1.60.0"; sha256="0spjsqb8rx6si5lshk0drlq1h4h5jgb6bmcwdh0wz9755npz0p8m"; depends=[]; }; - GraphPAC = derive2 { name="GraphPAC"; version="1.38.0"; sha256="1qrcxcb68bx1kzpilrd61m14902wl490kmzkjj9bv35w20ln1f3h"; depends=[igraph iPAC RMallow TSP]; }; - GreyListChIP = derive2 { name="GreyListChIP"; version="1.28.1"; sha256="0w52vwvjarql19bsv40b80yn701qx8c9d0clsjhj85wmzj2p6dhg"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; - Guitar = derive2 { name="Guitar"; version="2.12.0"; sha256="09grsasnnk7rmlzjh4lhas9r5spzcsrvmdqj6fx1dk22sckcqahh"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; - Gviz = derive2 { name="Gviz"; version="1.40.1"; sha256="0as3sxhv21bqqrpvafcqim7798hhkzj3q40hy1rqyhv2lhj4rbvi"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; - HDF5Array = derive2 { name="HDF5Array"; version="1.24.2"; sha256="1dzx5463ig3ag72a47slc4jbq5id11w77cj0zgzr85h0dbxklrr9"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; }; - HDTD = derive2 { name="HDTD"; version="1.30.0"; sha256="084bx1qwlibpd6xna29sb9nfksxa3z4jiz4l3fhkl8n5ww6k33pq"; depends=[Rcpp RcppArmadillo]; }; - HELP = derive2 { name="HELP"; version="1.54.0"; sha256="1sk3433d90msi6g0rpvsj8fdvr7isqs7gna409fcya2n4dlgmbs1"; depends=[Biobase]; }; - HEM = derive2 { name="HEM"; version="1.68.0"; sha256="1hq6i9rjrlis4fmi6zc06d37562vvv0sbsm4mihyrfmmn87k06wq"; depends=[Biobase]; }; - HGC = derive2 { name="HGC"; version="1.4.0"; sha256="1mm6drdslj7f23p9mzy0nlmyvmqafad9hm7nvskm6fv4jwbpg4wv"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; - HIBAG = derive2 { name="HIBAG"; version="1.32.0"; sha256="0a9gm7r2f1rfqzc5bviz3z4bfgl5lfzdwjlrc1dca2s6qsb5z01l"; depends=[RcppParallel]; }; - HIPPO = derive2 { name="HIPPO"; version="1.8.0"; sha256="0y69bc5557sijzczh2viflxg6wgy380a8jk7d1cqgmqcaqabwzbv"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; - HIREewas = derive2 { name="HIREewas"; version="1.14.0"; sha256="0gxaki4si2brjjns1fmhkgbrxv6kr5wcrhxx3083cnhdvllpqmzi"; depends=[gplots quadprog]; }; - HMMcopy = derive2 { name="HMMcopy"; version="1.38.0"; sha256="0hpb42wxsxyvl2p7l9ml2fnr30fvba54hc8zrl6rqaf9qdhw4c3x"; depends=[data_table]; }; - HPAStainR = derive2 { name="HPAStainR"; version="1.6.0"; sha256="1hp5y6ws0zg3qckd2bhhbpcqpzrlggljphqi2xc9fmjpbk2h0hbg"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; - HPAanalyze = derive2 { name="HPAanalyze"; version="1.14.0"; sha256="0w69qs669l36n287n3dqz3ym81m5ww3191xd6ixrxz4c4jph16d5"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; - HPiP = derive2 { name="HPiP"; version="1.2.0"; sha256="19pay1091q5w0kmcx1f2843dm1lk3f7p2nd9ffvgynxg84k873i8"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr MCL pROC protr PRROC purrr readr stringr tibble tidyr]; }; - HTSFilter = derive2 { name="HTSFilter"; version="1.36.0"; sha256="0s47sd83ih69r8m7q4llnscwpljbiraam16mwz29jwij5nqlaa1q"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; - HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.25.1"; sha256="0g1qkp8h4cmsisvjkv8qgm6aq4yifkr9bs1rxzlva0hlxlllg5k8"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; - HTqPCR = derive2 { name="HTqPCR"; version="1.50.0"; sha256="0am98rzwpi3kybq1l27c5qn3n1pg5aqwmh6jq9q0lzbjjin3haqc"; depends=[affy Biobase gplots limma RColorBrewer]; }; - Harman = derive2 { name="Harman"; version="1.24.0"; sha256="1rcn9i6mav40c1awxpnrn7lqxqmxhsm1mdgawcvx10xflyy7gqik"; depends=[Ckmeans_1d_dp matrixStats Rcpp]; }; - Harshlight = derive2 { name="Harshlight"; version="1.68.0"; sha256="152gxcngniw14kmminf9fcc0jkvi4dab1j88mp13nv05nmkd7c7l"; depends=[affy altcdfenvs Biobase]; }; - Heatplus = derive2 { name="Heatplus"; version="3.4.0"; sha256="0b1mzxysmrqinp93p587apna8p0llmawblwj93icydqxxm2jkhb1"; depends=[RColorBrewer]; }; - HelloRanges = derive2 { name="HelloRanges"; version="1.22.0"; sha256="1mmp19gpmpgn3kw9wjgsdc25hf4jfgg9bkjplg2qaf8rvm0mj8ih"; depends=[BiocGenerics BiocIO Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - HiCBricks = derive2 { name="HiCBricks"; version="1.14.0"; sha256="0zf4mpq1bv7hhylrwnz3ia26mxwjyfx6rr9l9hxcjvm6zxh856dc"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; - HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.4.2"; sha256="0psww4sl4m5ynkv53xzyrigxzbypjdhqivg4r64993dlgcdsyi48"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; - HiCcompare = derive2 { name="HiCcompare"; version="1.18.0"; sha256="0bgfa085x3w8g005iwnydv1c5i2sz12h5pksmki3427im6khycmr"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; - HiLDA = derive2 { name="HiLDA"; version="1.10.0"; sha256="0rf96isx2qwy7fs8y43bamfcdypiwbh5gggxqmdwdgkk0zhcpnls"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; - HiTC = derive2 { name="HiTC"; version="1.40.0"; sha256="1pkshlrra26cad0hf8a54brlkazni6rsvrplh36azxapx5rpps4s"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; - HilbertCurve = derive2 { name="HilbertCurve"; version="1.26.0"; sha256="0ay05dh8n98v1fasj9dw195vi24wry40xnzzcf57wfvxrn18ps34"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; - HilbertVis = derive2 { name="HilbertVis"; version="1.54.0"; sha256="0vci86nzwynzv95v90c48nkrwnf55z3a8ah2k6q5d17v8jd9p9b5"; depends=[lattice]; }; - HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.54.0"; sha256="19x99ah99a7fh1h7lhpxjs0ibnh7bcy6ri250clvv54pv2znindi"; depends=[HilbertVis]; }; - HubPub = derive2 { name="HubPub"; version="1.4.0"; sha256="1xixk2vm9ipm9rpdhcvs66gar2f7wlnx72pwfmlr0s75v6d5y0a5"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; - HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.12.0"; sha256="0b76awzcz8nf6hpipfiylz2rn40zi443wld4v087baljb7y41wyr"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; - HybridMTest = derive2 { name="HybridMTest"; version="1.40.0"; sha256="0wf002nrfr5ndkr2am555ifnx39iwygd5i2294z84vbfpxdi39rs"; depends=[Biobase fdrtool MASS survival]; }; - IHW = derive2 { name="IHW"; version="1.24.0"; sha256="1gsfy75dz7xh16z844llcmjnp0a0ridszmrbbv2bdaa43na5msmf"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; - ILoReg = derive2 { name="ILoReg"; version="1.6.0"; sha256="091z51j8whfg02g2lbfrjm53vcyncrc8v6g2agkr7p8ji2ms09la"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; - IMAS = derive2 { name="IMAS"; version="1.20.0"; sha256="07gb5k0xjwpq74ziknl3y9448591z6cxc7yza16x3vaz3927y7nz"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; - IMMAN = derive2 { name="IMMAN"; version="1.16.0"; sha256="1fg0vcckibrn59lcjvp3bjx1bzzvgl8wvbwj65zs22bkaw0g14h5"; depends=[Biostrings igraph seqinr STRINGdb]; }; - IMPCdata = derive2 { name="IMPCdata"; version="1.32.0"; sha256="09x3bnwdjrs3p3mkafln4fxxf1v4yglffwsj7bypfl04d4nqvsn6"; depends=[rjson]; }; - INDEED = derive2 { name="INDEED"; version="2.10.0"; sha256="09d694i2rjgaw4f3jsm41x0b1jhzxizbnvi9vvr8sd535cgzgczz"; depends=[devtools glasso igraph visNetwork]; }; - INPower = derive2 { name="INPower"; version="1.32.0"; sha256="0zszizdpb4b3lwp9561a1rq415vxns3w5dky2g1121p7b0pn3wdq"; depends=[mvtnorm]; }; - INSPEcT = derive2 { name="INSPEcT"; version="1.26.0"; sha256="0jx887vhxwd8zlqajr9czvn9nx88ryyxlnl58hxrlajjpcjkz9ax"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - IONiseR = derive2 { name="IONiseR"; version="2.20.0"; sha256="0cgx1dcfh617l9vr4r3ky8w7f0snl0vpavfd9n1h5n68p0p42dwi"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; - IPO = derive2 { name="IPO"; version="1.22.1"; sha256="00wzavqw8qldwqsj46z97wi32yxacwf64xjywr2ck6kjicz4d245"; depends=[BiocParallel CAMERA rsm xcms]; }; - IRISFGM = derive2 { name="IRISFGM"; version="1.4.0"; sha256="13c9xk3gmqg0chzhmd6kj9fwmc11mc2j3wqin5202dkkn7x9b170"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; }; - IRanges = derive2 { name="IRanges"; version="2.30.1"; sha256="1r01c9lczkchgd9hbxxd6wrd5avhy52mfqjck7l9avjq1jimvzv3"; depends=[BiocGenerics S4Vectors]; }; - ISAnalytics = derive2 { name="ISAnalytics"; version="1.6.2"; sha256="10arh47m7pg81rry1hb4pdfd0b5rdcj81lz9i32xlxanh3sp8kjv"; depends=[BiocParallel bslib data_table datamods dplyr forcats fs ggplot2 ggrepel glue lifecycle lubridate magrittr psych purrr Rcapture readr readxl rlang shiny shinyWidgets stringr tibble tidyr]; }; - ISoLDE = derive2 { name="ISoLDE"; version="1.24.0"; sha256="13cgy5hr4y6l3fkq2fx43wm4aypn5k3wp159kdqgp00lywd7pzxp"; depends=[]; }; - ITALICS = derive2 { name="ITALICS"; version="2.56.0"; sha256="150kfwhf47ipr2aql5cxli2hhs3cmgcya9aag0il41xy0wgc96k5"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; - IVAS = derive2 { name="IVAS"; version="2.16.0"; sha256="1flsha57b7p2rnnrg4vs9dpghr9kf6g92r0xng3rrmxzb9i88kzw"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; - IWTomics = derive2 { name="IWTomics"; version="1.20.0"; sha256="0yqgvyybfqpp4s44if323ipvxl8mpnjbsfvibbmhq108radzv488"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; - Icens = derive2 { name="Icens"; version="1.68.0"; sha256="0jnbfv7js8bw0ginql90krrpk0p54whj9igw0zk3jc45jqvj2vyc"; depends=[survival]; }; - IdeoViz = derive2 { name="IdeoViz"; version="1.32.0"; sha256="1wwh3ifdijhpm58lw7cmnx084xwfxnc7i0206w8rhrjnvnq6ljh3"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; - IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.10.0"; sha256="08rm56fniyg6lp8psmh0z6f2hvngvpy0q8fzcxxsizff87mqf0hq"; depends=[Rcpp reshape2 rstan StanHeaders SummarizedExperiment]; }; - ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.24.0"; sha256="12hk0bq0fgna8dbahgc04lm9bgv2jp8lh1qirjs5x45gjz896mbz"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; - InPAS = derive2 { name="InPAS"; version="2.4.0"; sha256="17ndjhf0kngpp7l48xbzc4p10h8zrmk76kjf05dw6ifpg50plqip"; depends=[AnnotationDbi batchtools Biobase Biostrings BSgenome cleanUpdTSeq depmixS4 dplyr flock future future_apply GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr parallelly plyranges preprocessCore readr reshape2 RSQLite S4Vectors]; }; - InTAD = derive2 { name="InTAD"; version="1.16.0"; sha256="1xjzml66a1sfqi0lai2jflfxwfc4k6n4cbram50sn21h7lkq330k"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; - Informeasure = derive2 { name="Informeasure"; version="1.6.0"; sha256="0rna7pgsgq4amjmq91y40gxrqv0rw3vc1rfk5g5bq2ki3lqqvi0s"; depends=[entropy]; }; - IntEREst = derive2 { name="IntEREst"; version="1.20.0"; sha256="10rnm2va657zqcmbrd2f19ypmm0s8kyljy0b22kx8qn0zr7zcis3"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; - InterCellar = derive2 { name="InterCellar"; version="2.2.0"; sha256="136hcjhn1mgvmvxqfmmwrclqm4qrfkhwfkkcn008ga9i01s94yvp"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; - InterMineR = derive2 { name="InterMineR"; version="1.18.0"; sha256="09qsh1ha2f5lipm3hnjpq7ra5xx2fqll9jkkq20w9xqn2b8a59mr"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; - InteractionSet = derive2 { name="InteractionSet"; version="1.24.0"; sha256="0qjimx25jvm8siq8hmlbf2z6mknzpbq945p06fsj826k57bpcsm5"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; - InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.4.0"; sha256="13pij41vhafipf96069hv6qkja75vkdxj5iicpbq409d8sdghbj2"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; - IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.18.0"; sha256="0w8zvlx4il5fh9fczfabac9mvzvxbrskn7pf0cc49s5ja8267vpq"; depends=[FGNet igraph knitr]; }; - IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.14.0"; sha256="1g4xv5x9g5ijjq80k8jswil7crhmwqv2j29rialx9z980nvkphyr"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; - IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.12.0"; sha256="10ysfzhycawlhm6zxxk1flwgz9si09vxv4hjygmjp2nn23py4ivm"; depends=[IsoCorrectoR readxl tcltk2]; }; - IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.31.0"; sha256="1w7zxsvmcrz8cj8g8xa1vqbzfycdhgsclhcjmkqjw1hwz6fp3xgn"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust RColorBrewer Rcpp relimp tkrplot xlsx]; }; - IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.18.0"; sha256="0n1gb9azxa1mxpsqvw3i3kf72f45nyjj1kgwwrzhd88n3g63lvkd"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; }; - KBoost = derive2 { name="KBoost"; version="1.4.0"; sha256="03rlkz6sblc6x2g1qy2n3di4gpribhxyivm2ddqsxzlm74f24mc1"; depends=[]; }; - KCsmart = derive2 { name="KCsmart"; version="2.54.0"; sha256="1qw4ag113rkg6lv556m0wv5c89r86f9sw1jzdg6mx4vrprnl64lv"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; - KEGGREST = derive2 { name="KEGGREST"; version="1.36.3"; sha256="0lzb3z6pzm323q70931b7220ygml7jb4g81dybwa79wqiqz15pni"; depends=[Biostrings httr png]; }; - KEGGgraph = derive2 { name="KEGGgraph"; version="1.56.0"; sha256="15pq040pcg8hr18xixmjp59xb7mgvygjv6kisqk8yv99l1611ndx"; depends=[graph RCurl Rgraphviz XML]; }; - KEGGlincs = derive2 { name="KEGGlincs"; version="1.22.0"; sha256="1lrs6nqsfsafnvkyj46851r7m6b10dq8f6jfikqyhbv4cisw4kln"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; - KinSwingR = derive2 { name="KinSwingR"; version="1.14.0"; sha256="1703kfmgp52v6yd5pjj8d7s8j725xq4xgrzsi015jgrka76q1860"; depends=[BiocParallel data_table sqldf]; }; - KnowSeq = derive2 { name="KnowSeq"; version="1.10.2"; sha256="0lvxkn2jcyyfwiz9l670dpb6fiyffp0dgsyy9dl5ja7vwrphkv45"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; - LACE = derive2 { name="LACE"; version="2.0.0"; sha256="0msm6hw4jkhgi4idz8xd8xjnywhz9sp5bh9xkwamc7854nfq5bqw"; depends=[biomaRt bsplus callr configr curl data_table data_tree doParallel dplyr DT foreach fs htmltools htmlwidgets igraph jsonlite Matrix purrr RColorBrewer readr Rfast shiny shinyBS shinydashboard shinyFiles shinyjs shinythemes sortable stringi stringr SummarizedExperiment tidyr]; }; - LBE = derive2 { name="LBE"; version="1.64.0"; sha256="1zlz3z9pin4aikdqwzs8p1y4mmkmjaj28hghv55lp2ygfy3z63y5"; depends=[]; }; - LEA = derive2 { name="LEA"; version="3.8.0"; sha256="0x5pwlk24f3mksd1wzgb09majsln4v10j54np1jlvydgcrd5pzf0"; depends=[]; }; - LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.22.0"; sha256="0scjl3g6bw3mh3ba7p4wa88vpa91msb6sridx0dn7v1vyi4c46q9"; depends=[CAMERA xcms]; }; - LOLA = derive2 { name="LOLA"; version="1.26.0"; sha256="142xwvx7bz5c8qg2kyi336bhrvvvmz8p5jjccciay59ywrwj6glq"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; - LPE = derive2 { name="LPE"; version="1.70.0"; sha256="03h2ipcj8zndj5rz1b9cwrdlxkxy0n7jalxmd75bwv3fyw82zdyq"; depends=[]; }; - LPEadj = derive2 { name="LPEadj"; version="1.56.0"; sha256="0w33bk7f0cbs8s7ay0q5h7khkxrg3i3h6cbpdz80r7p175rzn430"; depends=[LPE]; }; - LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.6.0"; sha256="03h7dp2s2salrydvdwf323bhipfalhz8y59da44cjqbccmvq6l7r"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; - LRcell = derive2 { name="LRcell"; version="1.4.0"; sha256="0yl32x1rx195csgv2sr3skw1089l5sb1k2da4x4shjjyljcvbj3y"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; - LedPred = derive2 { name="LedPred"; version="1.30.0"; sha256="17yqi84qmcwyg01swqzilinrjnlk8fq5x673nvz0l9cjbkq8nya3"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; - LinTInd = derive2 { name="LinTInd"; version="1.0.0"; sha256="1bj2j8hgs8rdk304i1i16xf6qwglyhxpcbw63zsmhqp4d1yw490g"; depends=[ape BiocGenerics Biostrings cowplot data_tree dplyr ggnewscale ggplot2 ggtree IRanges networkD3 pheatmap purrr reshape2 rlist S4Vectors stringdist stringr]; }; - LineagePulse = derive2 { name="LineagePulse"; version="1.16.0"; sha256="0h5s52iyfqnv6wrwb13qzv18dr2nrvxp359vxs8yrvynwl2ffhz5"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - LinkHD = derive2 { name="LinkHD"; version="1.10.0"; sha256="0f2qqvas1nvj5j22ihclxiv4sb0k7jyyygcn4bfrxv3pd29nhq47"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; - Linnorm = derive2 { name="Linnorm"; version="2.20.0"; sha256="1002lllgns5klv3q2wsikkbypa2bafpka7a8mri0y5bfxncfr2zb"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; - LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.50.0"; sha256="123qlv58y4vhsjnqgxs0w8zylnvib0hjb3jlg5cl74xzdb2gfl0f"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; - LoomExperiment = derive2 { name="LoomExperiment"; version="1.14.0"; sha256="1rnnvnbpxlvy85fdyz9zxsn4r6j4x8fydblz00jjl3mk9943538j"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - LowMACA = derive2 { name="LowMACA"; version="1.26.2"; sha256="0inx7lgywi6687i5kdifmfx8b4q3gbbiz9vn0mlfp8kwhjirb551"; depends=[BiocParallel Biostrings cBioPortalData data_table gridBase httr LowMACAAnnotation motifStack plyr RColorBrewer reshape2 stringr]; }; - LymphoSeq = derive2 { name="LymphoSeq"; version="1.24.0"; sha256="12habp9qw5pi6ylfwraqayxfhmrxx2334gcj0k3c8awgxnb20hc1"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; - M3C = derive2 { name="M3C"; version="1.18.0"; sha256="120gd7gkgc98d1l6hl2ij799b3jksdnga5iyb44ps9mbc79hl012"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; - M3Drop = derive2 { name="M3Drop"; version="1.22.0"; sha256="0h8qj7hwkm007717yv2j6bx5ri0zi71yd2bdl45rh68j30qv62ab"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; - MACPET = derive2 { name="MACPET"; version="1.15.1"; sha256="0742i3fxg2793lhgpxb4whh6mwvzd4bn86ykd0rv8sgilxyq5zsl"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; }; - MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.10.0"; sha256="060ja4q3nh8vl2gmdhdi028kqbk108mgmzmlvi68v3ndlhn535fq"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; - MACSr = derive2 { name="MACSr"; version="1.4.0"; sha256="1m35zsd20cfj715hxdn0sglr3k6yc18danhi422wx9mqnrig9grh"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; - MADSEQ = derive2 { name="MADSEQ"; version="1.22.0"; sha256="0wv6c1hmpsmzlxbx4vxvb7259ywy15knwkw3k6cdn15sxfkyviaf"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; - MAGAR = derive2 { name="MAGAR"; version="1.4.0"; sha256="1kgbs5ym43sdgqg1424s7pgz0jchqn19i73srsrl4icbizdig9c7"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; - MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="2.0.0"; sha256="0vcf7p585mw6avvs7rh2ffdhw2j5v9fcppdcp3a8lc99gxz2302m"; depends=[Biobase clusterProfiler depmap DOSE enrichplot ggplot2 ggrepel gridExtra msigdbr pathview reshape2]; }; - MAI = derive2 { name="MAI"; version="1.2.0"; sha256="1p2rimkrpg3r0pdd37wcr21lsbysmpvs318r477s0amvnbcqi9ni"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; - MAIT = derive2 { name="MAIT"; version="1.30.0"; sha256="0bhvhnxkhwjs0ilfa4y9a4wpiqg77hfpydfdx7v95fhgnwwcayii"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; - MANOR = derive2 { name="MANOR"; version="1.68.0"; sha256="1z0222fb2xkyi0wylcvlpzz8gdlh1174jxyv5ihz0wxxa2w07kdf"; depends=[GLAD]; }; - MAST = derive2 { name="MAST"; version="1.22.0"; sha256="1kmrqxcfzzcs8l33n9qn0vahc6wxq6ks3cjx95vg96maf2qzhzzi"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - MBASED = derive2 { name="MBASED"; version="1.30.0"; sha256="1hg8jg898zr0ighg64jzkb513vbjr1a76mc203pgh6h3gmdn56px"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; - MBAmethyl = derive2 { name="MBAmethyl"; version="1.30.0"; sha256="0kz8brk08d32b1iqp6lrwksfpwwiqbmdgni54pwy36n0n7biir9k"; depends=[]; }; - MBCB = derive2 { name="MBCB"; version="1.50.0"; sha256="1qslgqivsg8hjvyyw59d192jramla88lnx22zixm8jnjs7r4w4fi"; depends=[preprocessCore tcltk2]; }; - MBECS = derive2 { name="MBECS"; version="1.0.0"; sha256="0z9mhqg6f6gylw5q6hi0ll4nv0b5crzwp217i1n05psg8dg7wzi3"; depends=[cluster dplyr ggplot2 gridExtra limma lme4 lmerTest magrittr Matrix pheatmap phyloseq rmarkdown ruv sva tibble tidyr vegan]; }; - MBQN = derive2 { name="MBQN"; version="2.8.0"; sha256="0dml5ysapdmcf6qlv33v69007zj9bgz0gqdj4ywfwcsmjyvscdp6"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; }; - MBttest = derive2 { name="MBttest"; version="1.24.0"; sha256="0ydlbn2rh7b83l6fg2qrcr6a2vx2h29mv2ifi59dnybczwx8krx1"; depends=[gplots gtools]; }; - MCbiclust = derive2 { name="MCbiclust"; version="1.20.0"; sha256="12j1ghn3gccm6nsjp1faki2ncbxhpirp8bchm42mmqava5j7rgym"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; - MDTS = derive2 { name="MDTS"; version="1.16.0"; sha256="0hsbw98i88pls8744nj6z6lar4m649jdjgqrh6k692zmh5d8n52a"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; - MEAL = derive2 { name="MEAL"; version="1.26.0"; sha256="1d1daf2xj3bwvcgwd2dbf27vmw6n5rk1kk4crc61v0dra8j9dsqf"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; - MEAT = derive2 { name="MEAT"; version="1.8.0"; sha256="0s0mbfl1p6w3xpv27wjy6i8gddkr8prc6fhglfmklci791gxmjja"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; - MEB = derive2 { name="MEB"; version="1.10.0"; sha256="02zp4zk2986xajp91rak4pg8vwxp1f78wv3qwjmc8pig5m65a22j"; depends=[e1071 SummarizedExperiment]; }; - MEDIPS = derive2 { name="MEDIPS"; version="1.48.0"; sha256="1qxg2a7jqhnbn7zvlvn4i4kjg010ab34afds2sgcsvl4qpqcj9d0"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; - MEDME = derive2 { name="MEDME"; version="1.56.0"; sha256="0jfqr2bc8v45j38nmk9k03p02imvmrhfbd7b2gj9zcnbj4j3z6rz"; depends=[Biostrings drc MASS]; }; - MEIGOR = derive2 { name="MEIGOR"; version="1.30.0"; sha256="1qfb969jjm6xyrnq1l108mhjrgzm886aiakiacagsbivjcq7ianf"; depends=[CNORode deSolve Rsolnp snowfall]; }; - MGFM = derive2 { name="MGFM"; version="1.30.0"; sha256="0f0flpv2i6531k4vdkwljpzzljpdsyj32arf56q362vq0zpaf0k9"; depends=[annotate AnnotationDbi]; }; - MGFR = derive2 { name="MGFR"; version="1.22.0"; sha256="1v9aljss454kjqzrwzgfirqfpi59f36l9jgmfd8zwkljwgi8i6fn"; depends=[annotate biomaRt]; }; - MIGSA = derive2 { name="MIGSA"; version="1.20.0"; sha256="0ijf33z9xgqb67zhym0zn7jjfyh8kr7bvhm341b517r5igb311fb"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; }; - MIMOSA = derive2 { name="MIMOSA"; version="1.34.0"; sha256="0j2bf365ycs5z7vprm247g22cjfsq9g9z7x4h5g90nvkzz7cbx4r"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; - MIRA = derive2 { name="MIRA"; version="1.18.0"; sha256="17wxks9hbyy8hxmv0sfnd3wn1zfq33yy1p3lvbzsgzh1r2sgc2x1"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; - MLInterfaces = derive2 { name="MLInterfaces"; version="1.76.0"; sha256="179d19kxjipfkc40z15337x1vzqd7vz3gbmr2lw5w7x9l857ngs5"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny threejs]; }; - MLP = derive2 { name="MLP"; version="1.44.0"; sha256="169ck10y0md887x0agigbrzsdncd50sxxwrm17iz6qais9adikqa"; depends=[AnnotationDbi gplots]; }; - MLSeq = derive2 { name="MLSeq"; version="2.14.0"; sha256="0ajkxa6wm215df6i8y7z9ha68m25p5kg5hzk2ni4v07w6mn3cikj"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; - MMAPPR2 = derive2 { name="MMAPPR2"; version="1.10.0"; sha256="1w8ajra7ip9yfmzinvdgxcm1n808saj0shfx0irflmz54a829kfr"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; - MMDiff2 = derive2 { name="MMDiff2"; version="1.24.0"; sha256="031d3j2d6rqj5adaflbhq1q40h1573mg44vxk07hg3ky6w55mv82"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; - MMUPHin = derive2 { name="MMUPHin"; version="1.10.3"; sha256="0kg4zwwwbxzzl4cddbcn2ww93z5z17n6d2imw2gfr8jcpzxysd3n"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor stringr tidyr]; }; - MODA = derive2 { name="MODA"; version="1.22.0"; sha256="1aa5g2zy251q3rpy83c4siyvdnrzw5cb3a136qrxd69z6pfpnkx3"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; - MOFA2 = derive2 { name="MOFA2"; version="1.6.0"; sha256="1cdx2zgmicn5qa59x794mjcnz9csgmsscl21qd9yhwc5n9fj0zqw"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; - MOGAMUN = derive2 { name="MOGAMUN"; version="1.6.0"; sha256="1wgpr6ci1hmzl1racszxfvgk95q5x4ca21rxhimimgag1gkk472b"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; - MOMA = derive2 { name="MOMA"; version="1.8.0"; sha256="1fkmjaja97lnicxd6inwas5hfvpl0nz3my1cryidkc2ycsmslk8s"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; - MOSim = derive2 { name="MOSim"; version="1.10.0"; sha256="0vvigfn830z4cqgywglk6fd8vxakf68l9k076l5a7c52zq5l2vsl"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; - MPFE = derive2 { name="MPFE"; version="1.32.0"; sha256="10s0lyga44c1xnpv269sifhir1r208gf5p5ww41y6wp42rnr9shl"; depends=[]; }; - MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.14.0"; sha256="0pxp5k38fqxx8ncr8v1qv4mnckjyypq8s49h2vb64x7hrdiygvbx"; depends=[BiocParallel progress SummarizedExperiment]; }; - MQmetrics = derive2 { name="MQmetrics"; version="1.4.0"; sha256="0fyh9pqrfjav3ygvjvg90jv3vw81ngsxpgmkdwvdwpzrmqn2ngp9"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; - MSA2dist = derive2 { name="MSA2dist"; version="1.0.0"; sha256="075zq2rdxdjs7a777nxwqm0jm7g6qfvnijfrdrk3pckqg34z83bn"; depends=[ape Biostrings doParallel dplyr foreach GenomicRanges IRanges Rcpp RcppThread rlang seqinr stringi stringr tibble tidyr]; }; - MSPrep = derive2 { name="MSPrep"; version="1.6.0"; sha256="1g0kd405iypvl0vkc190a1mm4gf17pdvk32ij3m23d03pz6qsdpg"; depends=[crmn dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; - MSnID = derive2 { name="MSnID"; version="1.30.0"; sha256="1yiw95p40nz0pvq7s4i0xg02r9yqmnknak00z4lkw8jij3w3rkkq"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; - MSnbase = derive2 { name="MSnbase"; version="2.22.0"; sha256="1xzn0k3c2wn6c6gv90hddy3c201sg927342zrw9ig2xap0r053x3"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; - MSstats = derive2 { name="MSstats"; version="4.4.1"; sha256="0n03spd9a57wqsl3hmz5flsh8ijzgykg2iv7f05n0a7iwrq75ms4"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo survival]; }; - MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.6.0"; sha256="01rh07a5ibk3fn7dvmmj4665xki03jvlybv40sa0fzf25z07nsfg"; depends=[checkmate data_table log4r stringi]; }; - MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.4.0"; sha256="177fz522fx2bph66gm945jrg5wvr7cz98n0wbn7ndym85v6dql32"; depends=[ggplot2 minpack_lm Rcpp]; }; - MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.2.1"; sha256="1yx686wk5ykl31qq3fxcsvh8bw5hrv3yiqrkc1jngxjph1xzx2bg"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; - MSstatsPTM = derive2 { name="MSstatsPTM"; version="1.6.0"; sha256="1zpgisvnnqnp9x1ylzfkhdw2z3d9vfgig560xjl5vwmj3vhix7i3"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; - MSstatsQC = derive2 { name="MSstatsQC"; version="2.14.0"; sha256="0bgkwgcghdmccza7f4fkza3drjarl3b3prbzq7kf88k7k7zvknzr"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; - MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.16.0"; sha256="0nrhqznkg61vmv9g3zly0p26dvkbcf4lqx48yj9k8rbrfkg06bdk"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; - MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.10.0"; sha256="09cclwrf2s0ld3cvvs0drkfk8xgq6la9cc9mqn4kjw355zqwb7lp"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; - MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.4.1"; sha256="1g3vljkfddq95m31r53vcjnk785ikw8ml1clmfii10s66y852c4j"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; - MVCClass = derive2 { name="MVCClass"; version="1.70.0"; sha256="0apcjlq4i2mg8mlfqgvlcsqkiy51whzid3nd0m830jff0ywgh47g"; depends=[]; }; - MWASTools = derive2 { name="MWASTools"; version="1.20.0"; sha256="17j82k7nrw8lsvvzlzaq6134gckkrxgff3yi8s4jwlzi1grzgjc7"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; - Maaslin2 = derive2 { name="Maaslin2"; version="1.10.0"; sha256="1qw2vmxg5z8lirj2pknfsybn9vhrifqh3j7p2xyhnjsbsfw5ix70"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging lpsymphony MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; - Macarron = derive2 { name="Macarron"; version="1.0.0"; sha256="03mkvs3wwhs3xbyqm62db6x3r8djw57bkmrv1sxvz437khn12szp"; depends=[BiocParallel data_table DelayedArray dynamicTreeCut ff logging Maaslin2 plyr psych RCurl RJSONIO SummarizedExperiment WGCNA xml2]; }; - MantelCorr = derive2 { name="MantelCorr"; version="1.66.0"; sha256="1gkf6i63933ip5w41ba146d9sa3zxrq212cvk5pbma7mcflb4hdc"; depends=[]; }; - MassArray = derive2 { name="MassArray"; version="1.48.0"; sha256="1pa4mavjbd015cjmjy5kzzzkv60268a5yifzxhrdskjjigg6jd0k"; depends=[]; }; - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.62.0"; sha256="0g9izdy3f7h1zmsfbq45ahdz0ak5013rp3vxc4ijb1mpqx8ldd39"; depends=[]; }; - MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.8.1"; sha256="1liblnpziyyjxzrhdd5d89ilvfqqhbl87h3hsmdm0kwnmc73r37f"; depends=[matrixStats]; }; - MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.4.0"; sha256="11d8w1w2vy4wwvyd7wxg65j0jlfwk19ys5q1cfwmizlr048mhnv5"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma openxlsx pcaMethods plotly proDA rlang rmarkdown Rtsne S4Vectors shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vegan vsn]; }; - MatrixRider = derive2 { name="MatrixRider"; version="1.28.0"; sha256="1x35yjmgrnp327na3wnj7m42v71kgjhja3c80535042vgj6rilqp"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; - MeSHDbi = derive2 { name="MeSHDbi"; version="1.32.0"; sha256="07mcs3hj8z8bij09l58805rjff54d5599b12gxli56v2b5lk2ksw"; depends=[AnnotationDbi Biobase RSQLite]; }; - MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.68.0"; sha256="165chxcqbklamrrx6c2dmvxf4gj0mbmxy4wa3yxkn8kx9rxazn3f"; depends=[]; }; - Melissa = derive2 { name="Melissa"; version="1.12.0"; sha256="1acf89vy246gzs3xpnl1khc0jp8i7gh503r6f64a5452jpmwmbbh"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; - Mergeomics = derive2 { name="Mergeomics"; version="1.24.0"; sha256="1r2bx5w3xxamdzgnijffqn6rfw69320hk0glrsm9abssnfh1aygc"; depends=[]; }; - MesKit = derive2 { name="MesKit"; version="1.6.0"; sha256="1484x2sbbliiyjfmdx0kl11h24rgjd5xyzl34d3d2q56dgpf8plr"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; - MetCirc = derive2 { name="MetCirc"; version="1.26.0"; sha256="09skarxg69c3h0cgabm5rib10w6bkhxb8bjwdr6vsq1snzrw2p0n"; depends=[amap circlize ggplot2 MSnbase S4Vectors scales shiny]; }; - MetID = derive2 { name="MetID"; version="1.14.0"; sha256="02i4n39zar5ybzz0l051ik835q4yf4cps7hsv2yyna3misp22gpa"; depends=[ChemmineR devtools igraph Matrix stringr]; }; - MetNet = derive2 { name="MetNet"; version="1.14.0"; sha256="01vm4km6xs55nkw7gbvf73c55x0izi4kfc58ppcd5bjgsmwvzw0k"; depends=[BiocParallel bnlearn dplyr GeneNet GENIE3 ggplot2 parmigene psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; - MetaCyto = derive2 { name="MetaCyto"; version="1.18.0"; sha256="0l5q6hiz9hjjpd8y255v34487yv7ianfq8rd7py76686l9l82rya"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; - MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.16.0"; sha256="1fjggizwmm2db4plqqcfk49rvsm6jy116lb2sbyzvhs3bmp8nrx7"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; - MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.10.0"; sha256="0mdjl3vvf4ymc7rg9r08dgq0n0n7wc4lgz6ayjhp049ar0ry8yhr"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; - Metab = derive2 { name="Metab"; version="1.30.0"; sha256="1hy9h8q61did3j3md72gdjsnxv6x7vgkqidaffn8c66xcbc98pw5"; depends=[pander svDialogs xcms]; }; - MetaboAnnotation = derive2 { name="MetaboAnnotation"; version="1.0.0"; sha256="08xdp7s5c4xb9qhg91mgyb07d21l327bjyqzvrnwbn8ynkqyv3wh"; depends=[BiocGenerics BiocParallel MetaboCoreUtils MsCoreUtils ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; - MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.4.0"; sha256="0lvc8hzn0czzrz01hwkkhrsshq5k5nikc5irn6hbi3sv93r2bzka"; depends=[MsCoreUtils]; }; - MetaboSignal = derive2 { name="MetaboSignal"; version="1.26.2"; sha256="1cvzm0dgk09angkdmp27f0nfh0glz8zlljz2zg4gs2ng15virp4n"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; - MethPed = derive2 { name="MethPed"; version="1.24.0"; sha256="145pm17h164qqj4vhdrgrqqj5j1axls0841c6ikz5yp0l13065ij"; depends=[Biobase randomForest]; }; - MethReg = derive2 { name="MethReg"; version="1.6.0"; sha256="1133ndj4q6ddmq6rjjljj8f01zrh5rn09pgj6g0yp4yfpymbkj04"; depends=[AnnotationHub DelayedArray dplyr ExperimentHub GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesame sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; - MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.28.0"; sha256="06cvyic6y1g6j397j9xvsqhjhwlarldxqfg28i00ym6l6hzcad4l"; depends=[Biostrings gplots seqinr stringr]; }; - MethylAid = derive2 { name="MethylAid"; version="1.30.0"; sha256="02m1f64734akq7fjklxlckxh0jvw6qvkwkcy86fnn4kp06z28vcq"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; - MethylMix = derive2 { name="MethylMix"; version="2.26.0"; sha256="1fdsia49km7rha9m05zn37arjdxhvji4hb5zf6s1fapfy9nvlfyy"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; - MethylSeekR = derive2 { name="MethylSeekR"; version="1.36.0"; sha256="141ms4dy49pvfkvhrkvpffx3wcn68zz2c99cxajhymv7346qi9sz"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; - Mfuzz = derive2 { name="Mfuzz"; version="2.56.0"; sha256="0rz5gpw3p2qcghi1gd3sdxcbwm0f2b4hqdr461wlz0r0dbnnwhh4"; depends=[Biobase e1071 tkWidgets]; }; - MiChip = derive2 { name="MiChip"; version="1.50.0"; sha256="10z06f0i41yckxvs32hnd6k1q5l4fvdvr27rgjrkk817k14shn59"; depends=[Biobase]; }; - MiPP = derive2 { name="MiPP"; version="1.68.0"; sha256="080cc1y32yi046xsj05vppp1l3c2sdyjclw8p439kmakcrf0sigf"; depends=[Biobase e1071 MASS]; }; - MiRaGE = derive2 { name="MiRaGE"; version="1.38.0"; sha256="0w4c41izigparfaddj5ffccxw7v33gc11zh0b1cdyz2hacmw03ly"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; - MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.2.0"; sha256="0czli81lqbx1xkhj5yqlixjgszk4whvckhjpw9k70ggcx9svc249"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; }; - MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.8.2"; sha256="1v7drwwn1qflrxi25nllk84xr7v24qypdnq7pz7nkxganfdnw7xh"; depends=[ape Biostrings coin dplyr dtplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar plyr rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; - MineICA = derive2 { name="MineICA"; version="1.36.1"; sha256="0552rxj4blisxyzrjm59qxmqnrfg9x1kygr6d2knhnzyasprwl5p"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; - MinimumDistance = derive2 { name="MinimumDistance"; version="1.40.0"; sha256="0409nqlhjnx0l8zcy71zrawjbml1rmjkgch9a87zcc1j2phnpdch"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; - MobilityTransformR = derive2 { name="MobilityTransformR"; version="1.0.0"; sha256="0x3xxh54sdlb6dan9rrrg116vfr1q4b0z9fdjaqh52qbwchy1x82"; depends=[MetaboCoreUtils MSnbase Spectra xcms]; }; - ModCon = derive2 { name="ModCon"; version="1.4.0"; sha256="1av9ragz32ss6y0hh36hc8zldg5qmgz4kxjkgi649v2l2fb5yn8h"; depends=[data_table]; }; - Modstrings = derive2 { name="Modstrings"; version="1.12.1"; sha256="1854yzhr3k4x72d5ix5c14m6b3hhxlg2pvmyifvqx3j65rbinq37"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; - MoonlightR = derive2 { name="MoonlightR"; version="1.22.0"; sha256="1yigaiychilz0v847vvqwxdgn5gcfxih1nxf7586g0w9g147srd9"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; - Motif2Site = derive2 { name="Motif2Site"; version="1.0.0"; sha256="1lrzl082gb2l2y5skmra9kl2rns19xdbxaw5cki3n7831s476kq2"; depends=[BiocGenerics Biostrings BSgenome edgeR GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS mixtools S4Vectors]; }; - MotifDb = derive2 { name="MotifDb"; version="1.38.0"; sha256="1cyfz0l0yvdii3idaiq5w39yzxlzfpifa4v5pv7hdjfjj83a8rbi"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; - MouseFM = derive2 { name="MouseFM"; version="1.6.0"; sha256="1z5qlkcgjrj2hhjqh5zirp940brsc92c9ss28f4fq35j2x4zhmx5"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; - MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.4.0"; sha256="1jabh2xr27c12628bfsn6jywbygmisaggvkvazaf8qx14xdi5d7c"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; - MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.4.0"; sha256="1m06akw50rrpj5h3r78a5c4cbq52j8ni5kkk1fw7221z8j65sy8c"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; - MsBackendMsp = derive2 { name="MsBackendMsp"; version="1.0.0"; sha256="0p6df64w9d79i7xzwg19pqwn074slfp2izh7hiflncdxffp412i1"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; - MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.2.0"; sha256="1zlgdj7ycf3is9wv5w0fbrzf4w7fh3k21id1s6gwr5zdws9zbhs6"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; - MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.8.0"; sha256="077x1zcy27x8akmagjn75j97082cgnahrbfw0qx08q455m5x3xzh"; depends=[clue MASS Rcpp S4Vectors]; }; - MsFeatures = derive2 { name="MsFeatures"; version="1.4.0"; sha256="111iqcq4q315pb4j8z427shin9b00p179m2s9h6dd7imvbd68yq3"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; - MuData = derive2 { name="MuData"; version="1.0.0"; sha256="11plrz8mfaj1nrw6igxxk6hmrhnxyfs7cw3bmj3f1fg6sa9nr76j"; depends=[DelayedArray Matrix MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - Mulcom = derive2 { name="Mulcom"; version="1.46.0"; sha256="1fs3wl9x7ww6q15ichi3jxfjvafsa2vdghds948vwwn9jpv79bhc"; depends=[Biobase fields]; }; - MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.22.0"; sha256="1wnp52l9vifxn1wzqgndzp9b6ih0s1cflxx1fhw32k32d05cw9q1"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; - MultiBaC = derive2 { name="MultiBaC"; version="1.6.0"; sha256="028jc5kr84qi9m38g6xqf7cizif2qzg2j4ypvyav7syqb9n0927s"; depends=[ggplot2 Matrix MultiAssayExperiment pcaMethods plotrix ropls]; }; - MultiDataSet = derive2 { name="MultiDataSet"; version="1.24.0"; sha256="0rfs6jkzh1i4mj1pgfk4lwzmcl8pcwizra3q3282x3d8h2g98qnf"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; - MultiMed = derive2 { name="MultiMed"; version="2.18.0"; sha256="1cdkkspmwn67d685kgna8fr9w3mqrzg6qbv6vzr81knrwmhgxp1z"; depends=[]; }; - MungeSumstats = derive2 { name="MungeSumstats"; version="1.4.5"; sha256="14c8gx5pjppf7z0dcwdrg6cmbwg7k7k4782a13v47xiwhpxszxd2"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr IRanges jsonlite magrittr R_utils RCurl rtracklayer VariantAnnotation]; }; - MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.6.0"; sha256="113b2hrc0n47qz144xhky93jcm6qh6flzadq5y0plga5jrz0rnwg"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; - NADfinder = derive2 { name="NADfinder"; version="1.20.0"; sha256="0ynwf5ij694a46qa2fl4xvvxalh8a9mh6k0gxd3dfbi692lm6ihv"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; - NBAMSeq = derive2 { name="NBAMSeq"; version="1.12.0"; sha256="0rgyhijlv7knnb5z2zswxdicyblrxrnyliw1hlppdwsjwjyd3ixj"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; - NBSplice = derive2 { name="NBSplice"; version="1.14.0"; sha256="1hkcjn1icc6rmg13gnkya6xsmxa71pggdc9fzg8i47bs4cw0y6fb"; depends=[BiocParallel car edgeR ggplot2 MASS reshape2]; }; - NCIgraph = derive2 { name="NCIgraph"; version="1.44.0"; sha256="15srh42yrax35kkxiansx9aabraifyh70dxv17fg0vkf9pdndxic"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; - NOISeq = derive2 { name="NOISeq"; version="2.40.0"; sha256="0ah6adlhv4254jkssinn2ik8n811hd1nw85bnzqk2kwhl49nrk27"; depends=[Biobase Matrix]; }; - NPARC = derive2 { name="NPARC"; version="1.8.0"; sha256="1c9zi2a3jki589brg09hzmlzqxzlnq2xwd1674v0vrc70d99ybs9"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; - NTW = derive2 { name="NTW"; version="1.46.0"; sha256="1nqf9nm86lirwrzn6mipj9y7j9zi2jl4675y66k92pvdh0cvcyxx"; depends=[mvtnorm]; }; - NanoMethViz = derive2 { name="NanoMethViz"; version="2.2.0"; sha256="0qxk3zhpd5axyzh5sa1dvvls386dzjmas2xkf0gpkgjyq4c7p2l1"; depends=[AnnotationDbi assertthat BiocSingular bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 glue limma patchwork purrr Rcpp readr rlang Rsamtools RSQLite S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; - NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.26.0"; sha256="0kqhdcqaikvrnfnw24m0sk569674zv3rvq345ysnmgyhj7xw3vpv"; depends=[Biobase matrixStats Rcpp]; }; - NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.4.0"; sha256="19ah6rlqahkrb02zm2hrbdkz4z7rdpgzg6rm77q5pras9q6r75c7"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; - NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.28.0"; sha256="1vjhxzi4d66kmsm22dwbzq9w5i7y7ldfh41krb2755q23f7pd4rs"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; - NanoTube = derive2 { name="NanoTube"; version="1.2.0"; sha256="0f50xb155dwxkzvirqhz1l4iqbs8m6qp6klihjlww12yhv967b67"; depends=[Biobase fgsea ggplot2 limma reshape]; }; - Nebulosa = derive2 { name="Nebulosa"; version="1.6.0"; sha256="0i37bsvppfn2djivg7hnvpjxnw0h42cxa31590w18c0mjgy7a553"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; - NeighborNet = derive2 { name="NeighborNet"; version="1.14.0"; sha256="0s0aqnd91jylkkcrwm00dmvfd25fyfzdb7n0y0kbnc8d5m8njqkq"; depends=[graph]; }; - NetPathMiner = derive2 { name="NetPathMiner"; version="1.32.0"; sha256="10rgiy57ifmvz0m7z35q0xighxj4wnb0gvak45s249wagishppji"; depends=[igraph]; }; - NetSAM = derive2 { name="NetSAM"; version="1.36.0"; sha256="1vc4qnjr1qwcws3z5a665y790f5nw4ipv6ld5lzr5vdq09sxd5gr"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; - NeuCA = derive2 { name="NeuCA"; version="1.2.0"; sha256="0x2q7la9b3nfwlca0vnrkgankwpsrch2jhglrjn7qvnmc1zlk99p"; depends=[e1071 keras limma SingleCellExperiment]; }; - NewWave = derive2 { name="NewWave"; version="1.6.0"; sha256="1k4zyvylkidnkkqgjcqk1w43sx93ss86h6bsa62h7qa9186wxivb"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; - NoRCE = derive2 { name="NoRCE"; version="1.8.0"; sha256="17awsr3l50p4isfpmvw1v6mk8lygc8xrhwdxgqp1icbng5i620j2"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors SummarizedExperiment tidyr zlibbioc]; }; - NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.14.0"; sha256="13z5vgnmx6d85ygb1hj3s24mq4jcnfhx6pgigi9ha73p8rimixs8"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; - NormqPCR = derive2 { name="NormqPCR"; version="1.42.0"; sha256="1jrif7cqippczyzf3nszbwxn0a58fvlmkcwb9as0ymv9qvh372vx"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; - NuPoP = derive2 { name="NuPoP"; version="2.4.0"; sha256="0gxanqk1xarjgnczll3fj48hx0b7iizkixy8z94d3q28y5zcqvfz"; depends=[]; }; - NxtIRFcore = derive2 { name="NxtIRFcore"; version="1.2.1"; sha256="1mjd09ywdsmzn46qgh3gzalvid3d9b6wajwkj8siibx7rpmc0rwz"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges magrittr NxtIRFdata plotly R_utils Rcpp RcppProgress rhdf5 rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; - OCplus = derive2 { name="OCplus"; version="1.70.0"; sha256="0smrb7k510x19pgpk53xl6c8gc8bccasg6d461jwzblx01mm4l2x"; depends=[akima multtest]; }; - ODER = derive2 { name="ODER"; version="1.2.0"; sha256="1vj3l4032sbjmbi508lzhl41gr3wpyma2ch8fm7arv5csksnn20s"; depends=[BiocFileCache BiocGenerics dasper data_table derfinder dplyr GenomeInfoDb GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyr purrr rtracklayer S4Vectors stringr tibble]; }; - OGRE = derive2 { name="OGRE"; version="1.0.0"; sha256="1lm6hqi9lc5xpdgbvwcjzhcjw7qp2ympi7w17s90mmki0g36rf6x"; depends=[AnnotationHub assertthat data_table DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges rtracklayer S4Vectors shiny shinyBS shinydashboard shinyFiles tidyr]; }; - OLIN = derive2 { name="OLIN"; version="1.74.1"; sha256="0yv767qf9h6d9hyzlpwq2y5l874gyfn9mvrs8m5kjvzspnm6sisk"; depends=[limma locfit marray]; }; - OLINgui = derive2 { name="OLINgui"; version="1.70.0"; sha256="0pdnxp9i08faljafy91kxg7xiv9b2fh3k5c3gqdfrvwggx3d839x"; depends=[marray OLIN tkWidgets widgetTools]; }; - OMICsPCA = derive2 { name="OMICsPCA"; version="1.14.0"; sha256="0fldppwhjijw53s6q44g92n59pfmlz5049qsmna7nzqdh06l8wh6"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; - OPWeight = derive2 { name="OPWeight"; version="1.18.0"; sha256="1k4qfbg29lll9hpkzbcbhfipyjn4rdpfyhm2wmr8a9jcp04fpl43"; depends=[MASS qvalue tibble]; }; - ORFhunteR = derive2 { name="ORFhunteR"; version="1.4.0"; sha256="1381knb35njc4dvbdr9jbkmyfyc87aacvham3ljmdq7llis0zz7b"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; - ORFik = derive2 { name="ORFik"; version="1.16.6"; sha256="0yiby6z7bx5n7p32nz8yhv630m3laawq07ck11lp6vw0sn9dg6s1"; depends=[AnnotationDbi BiocGenerics BiocParallel biomaRt biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gridExtra httr IRanges jsonlite R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; - OSAT = derive2 { name="OSAT"; version="1.44.0"; sha256="1hd1qmxbsqr1x1k8iihji48n5dqqg0zpk0ccvgaq2qkdkf9ayp06"; depends=[]; }; - OTUbase = derive2 { name="OTUbase"; version="1.46.0"; sha256="1s41amahlqpb5gffmxd4rgdc1wwdjfzsr3jikv7flbb48965rjin"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; - OUTRIDER = derive2 { name="OUTRIDER"; version="1.14.0"; sha256="0app3h20d76nrrrm2yc856fsz6wvjm3rl0irlr8vfb85qws7zrfi"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; - OVESEG = derive2 { name="OVESEG"; version="1.12.0"; sha256="19z51p11g7a3bdr8ipq1pq7006z69n5qbfpj6xg50jbqv6vl7j6i"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; - OmaDB = derive2 { name="OmaDB"; version="2.12.0"; sha256="1ydpfdfa6gx2ca5damy5l806i9wjvpphz8wjzfbb3ijgza0dwl15"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; - OmicCircos = derive2 { name="OmicCircos"; version="1.34.0"; sha256="0644xcyk0li39xcyldqy927k06q6p6b8y07s3wl75dmd8gqwgvdp"; depends=[GenomicRanges]; }; - OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.12.0"; sha256="125ijszmi6igsxhdg4kmgkc1sbsvsqk6ybqab73d1ly17w612z5q"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; - Omixer = derive2 { name="Omixer"; version="1.6.0"; sha256="12avwqrb27ljish8xk4gryjisa6zslx8b977k2dmgp19wm7f2f9x"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; - OmnipathR = derive2 { name="OmnipathR"; version="3.4.7"; sha256="1042hif90kcq8vf0qmqkkhmx014ammg5m7j96mxkd139nrdc6hzs"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang rmarkdown stringr tibble tidyr tidyselect withr xml2 yaml]; }; - OncoScore = derive2 { name="OncoScore"; version="1.24.0"; sha256="02s6y5p1ncmlbaqf4fmgkvkbf913d6czz3gd9dqfwblsycxy2cxp"; depends=[biomaRt]; }; - OncoSimulR = derive2 { name="OncoSimulR"; version="3.4.0"; sha256="0ixlyrj7112rn2dnrfx226kqxfsisi2rccan9rxfcz1l1slkjvwk"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; - OpenStats = derive2 { name="OpenStats"; version="1.8.0"; sha256="08r2id3f6gx5s1va4gr6m191c9y44m2c6s5lbxr8xhrnpi4c61p0"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; - OrderedList = derive2 { name="OrderedList"; version="1.68.0"; sha256="15085hiyqn5ci5ahc674hp1j2lszdm6gm8acs1b87rg6pp5zjl4q"; depends=[Biobase twilight]; }; - Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.24.0"; sha256="0j29f85d66c45ww3417xx376vpz0mmvga5n7h2cl1sd4h70b55as"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; - OrganismDbi = derive2 { name="OrganismDbi"; version="1.38.1"; sha256="0mxnxj8x4hc21psz39mf7qwvh1fsn6qyjgl5qffk1xxmasf69619"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; - Oscope = derive2 { name="Oscope"; version="1.26.0"; sha256="0rbz82k96k7d8nrbcr8mnz24kq8x95yw7m55vg64i66gm5gks168"; depends=[BiocParallel cluster EBSeq testthat]; }; - PAA = derive2 { name="PAA"; version="1.30.0"; sha256="0nq79hwinz95f0rifpk18r26vfvymns8dvib0mx4jjd13k75xgzz"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; - PADOG = derive2 { name="PADOG"; version="1.38.0"; sha256="156w598w39gf1mc4jm0p7c7hip4vlsms7jvb3dj5h789bgr0whnq"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; - PAIRADISE = derive2 { name="PAIRADISE"; version="1.12.0"; sha256="1p0wyxdbhcv88x0yrg03z1ml4qx6j7544z1xpgmz1i6sxp8k18mk"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; - PANR = derive2 { name="PANR"; version="1.42.0"; sha256="1g3165x4zgrw0x3yacq25k9jvfnad0yi1zbkmqxccivgnxh572ah"; depends=[igraph MASS pvclust RedeR]; }; - PAST = derive2 { name="PAST"; version="1.12.0"; sha256="14kv16nwgpdb7sqx6ba41pkdxqv2vpsfn6d8fwv24c7iihl8vac9"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; - PCAN = derive2 { name="PCAN"; version="1.24.0"; sha256="1c4rwima7jzk18ib370rnyxraknzhkpil2jh2q22qhj5sgrnkpcx"; depends=[BiocParallel]; }; - PCAtools = derive2 { name="PCAtools"; version="2.8.0"; sha256="03s4dh008fys2rrcpzanc0892p63f6jyyvzc9m42jbi1dlkyx26v"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; - PDATK = derive2 { name="PDATK"; version="1.4.0"; sha256="1psnpjii3a2hv6nrlzxn4xb5180n6wwylv0csx5akgbn3mdqwm8n"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; - PECA = derive2 { name="PECA"; version="1.32.0"; sha256="17lhbcq9pn9zi86vpv4b6ywj91aas4cyj17qv161jb093yfx8vwq"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; - PERFect = derive2 { name="PERFect"; version="1.10.0"; sha256="036bvk3bbrpvg8dzikw2di76k9vmdd7i1x0hfdr24l4wdq81jaa6"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; - PFP = derive2 { name="PFP"; version="1.4.0"; sha256="1dglmiq24gmnw5lhi509d1f5w7iabgiyndr36cz7j9wzqrxnzf09"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; }; - PICS = derive2 { name="PICS"; version="2.40.0"; sha256="04hysyaikw0dl2visnhyzvj21k6gamzsh5awlrgczaqcpxh5j7gf"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; - PING = derive2 { name="PING"; version="2.40.0"; sha256="0x75lq8igf5ppdbr7vs672cs6qi15wxrh4v5ir3qsyfv96n3i9dl"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; - PLPE = derive2 { name="PLPE"; version="1.56.0"; sha256="07s2xgz733zr3a7z3nzvb3iimb2pb1xpixp8xwmyzi624ndms0v3"; depends=[Biobase LPE MASS]; }; - POMA = derive2 { name="POMA"; version="1.6.0"; sha256="1jd1k0kvxkinnd74kcm6yhihfal4d1b17zpwjg3m3492x2hg79dd"; depends=[broom caret ComplexHeatmap dplyr e1071 ggplot2 ggrepel glasso glmnet impute knitr limma magrittr mixOmics randomForest RankProd rmarkdown SummarizedExperiment tibble tidyr vegan]; }; - POWSC = derive2 { name="POWSC"; version="1.4.0"; sha256="071bvywmnjc08yrs912m7cfb0s9rf8rvsqyg0dnqsyh16cyc4nxw"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - PPInfer = derive2 { name="PPInfer"; version="1.22.0"; sha256="0y7wagkskw8m22bq7sd99hqc1zn583lljqddncz2kcd8x57pims2"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; }; - PREDA = derive2 { name="PREDA"; version="1.42.0"; sha256="10vl8d57x3hyn3145nyi2jg3fyb8xjhbgiica8fy90x6759avaqg"; depends=[annotate Biobase lokern multtest]; }; - PROMISE = derive2 { name="PROMISE"; version="1.48.0"; sha256="0pic8mvlv87hz9cmscr74vaxg4wnlsgmxlybhy4xnyzidg2cadyi"; depends=[Biobase GSEABase]; }; - PROPER = derive2 { name="PROPER"; version="1.28.0"; sha256="01frrjg3rwg2vwsg7hq27kp4k7in1y0fckz9xdfv0b0737ps7j1y"; depends=[edgeR]; }; - PROPS = derive2 { name="PROPS"; version="1.18.0"; sha256="1y2n16gnmqfp187sylh7v0fvsd4p9ij773ngviv57idwg9nrb8a1"; depends=[Biobase bnlearn reshape2 sva]; }; - PROcess = derive2 { name="PROcess"; version="1.72.0"; sha256="03ppx9zm9mvqb5r1mkrr3pxids8nllw2phqzpsb3bmz1x0yab4nh"; depends=[Icens]; }; - PSEA = derive2 { name="PSEA"; version="1.30.0"; sha256="0wdljlx7jvq78g9qp330ccqld4n9ilaaykqh527lljzc8p5vvbjx"; depends=[Biobase MASS]; }; - PSICQUIC = derive2 { name="PSICQUIC"; version="1.34.0"; sha256="0gkkxxbc2a7cin92qwn1masqfigyz9s4fhyy2daa17r3ckk4ccgx"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; - PSMatch = derive2 { name="PSMatch"; version="1.0.0"; sha256="027r2r70n9v54m6kww6bzaqvf7ahn42vh7fdbbb4m6xzbl62frmq"; depends=[BiocGenerics BiocParallel igraph Matrix MsCoreUtils ProtGenerics QFeatures S4Vectors]; }; - PWMEnrich = derive2 { name="PWMEnrich"; version="4.32.0"; sha256="031j563jcaakiasx1r8aflhqm0vq7j5628f9bv4kkyi5rhr3aix9"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; - PanomiR = derive2 { name="PanomiR"; version="1.0.2"; sha256="14cmhsns15620ggqp41hl1dahanvqdlydxgr1aysq0h1145yhw31"; depends=[clusterProfiler dplyr forcats GSEABase igraph limma metap org_Hs_eg_db preprocessCore RColorBrewer rlang tibble withr]; }; - Path2PPI = derive2 { name="Path2PPI"; version="1.26.0"; sha256="0csqciqavnamyhsf7hx5c6x3ranr1h8wskzz09hf7rw65gxbn6jp"; depends=[igraph]; }; - PathNet = derive2 { name="PathNet"; version="1.36.0"; sha256="1xbwzvbnjgxby7xwgpl20qnx172lpzhm5z8rm3q1n3ww0n4z7pfk"; depends=[]; }; - PathoStat = derive2 { name="PathoStat"; version="1.22.0"; sha256="1f01vrncrw50jcvaivgqpjyc6h0ccphzifcw1aq03w39nrw55mz9"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; - PeacoQC = derive2 { name="PeacoQC"; version="1.6.0"; sha256="1b2jhph8nhx9iqia6cbs84aaz7srm7fchn7r0d55fmfnzg5cdr7z"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; - PepsNMR = derive2 { name="PepsNMR"; version="1.14.0"; sha256="04q4xminxkqzc88dqyrpddzdmcnj1n4ssspk3wnraplwrxhg1kcx"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; - PhIPData = derive2 { name="PhIPData"; version="1.4.0"; sha256="06fc0h2jn2v6n921rmxb37rdkk60v9il9x32w1ky2n5xaiqhx3yl"; depends=[BiocFileCache BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - PharmacoGx = derive2 { name="PharmacoGx"; version="3.0.2"; sha256="16mpqz4amzydwihniwz7ivj8z9lb0z9rmldk3j4f2f8gy49l63pi"; depends=[Biobase BiocGenerics BiocParallel boot caTools checkmate coop CoreGx data_table downloader ggplot2 jsonlite magicaxis MultiAssayExperiment RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment]; }; - PhenStat = derive2 { name="PhenStat"; version="2.32.0"; sha256="1g8g7452vkl06vphmmb7vv090dng58cx9v3d1vhsxsf6bzqny4ql"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; - PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.4.0"; sha256="0wzf9c3iimcq8hc78ai188slbhkgzq94nmzcd4gxzlgmk44524ap"; depends=[doParallel dplyr foreach igraph Matrix]; }; - PhosR = derive2 { name="PhosR"; version="1.6.0"; sha256="0rgqr458m5hbai1jmcxv73ay74bgd44iwjz98b848qgx4imz8jp2"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; }; - PhyloProfile = derive2 { name="PhyloProfile"; version="1.10.5"; sha256="1ij0mjz9arpfp67vjv6mp3h2w1marwqqdbvb2sc7vmqd0wj8bnvg"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyFiles shinyjs xml2 yaml zoo]; }; - Pi = derive2 { name="Pi"; version="2.8.0"; sha256="0vpvpq7ss4x6qcz525zl71ysfh65zcqp13qym03s0v6r491gndnv"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; - Pigengene = derive2 { name="Pigengene"; version="1.22.0"; sha256="11bx3ivzfzh0bnmz77psz4vah0gm0vaa7pwbbkwjcra85sbzyxiz"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI DOSE dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; - PloGO2 = derive2 { name="PloGO2"; version="1.8.2"; sha256="0icflih4wkddj87zvq1f188v0rqb57cw9l9vygmz7vvlxis2x9ny"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; - PoDCall = derive2 { name="PoDCall"; version="1.4.0"; sha256="1k47igncvcz4sqpv59148nqcinabz5ifpl6xkcrry20gvbngnrca"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; - PoTRA = derive2 { name="PoTRA"; version="1.12.0"; sha256="0k93zj0mfs8pkr5cnf2y7bg9ynnwwr1acylsav8dcyz8vkc9r25k"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; }; - PrInCE = derive2 { name="PrInCE"; version="1.12.0"; sha256="02vnpdmns14g0qhizpify2p4mzkacj31ar31jmbxzg3bcbq2nz84"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; - PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.11.0"; sha256="1miw8rj1zn1xv97dkgs66k9g21i6gp3j2m1l1akysskczgam3i2c"; depends=[BiocParallel biomaRt brglm data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; }; - Prostar = derive2 { name="Prostar"; version="1.28.6"; sha256="1kjwzb94g91g9nw2kx8dcqq7iwld3flkaxaisvjg5rzi3306s96g"; depends=[DAPAR data_table highcharter htmlwidgets later MSnbase RColorBrewer rhandsontable shiny shinyAce shinyBS shinycssloaders shinyjqui shinyWidgets]; }; - ProtGenerics = derive2 { name="ProtGenerics"; version="1.28.0"; sha256="04hcgj4q8dbzp1a29rbww2bxxrg679pgys3m09p0ydkpsx76rq05"; depends=[]; }; - ProteoDisco = derive2 { name="ProteoDisco"; version="1.2.0"; sha256="1929aarf9al6di1r6z2n2ggdzblmfidikwswfg53nqanwwms31wa"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; - ProteoMM = derive2 { name="ProteoMM"; version="1.14.0"; sha256="0l5h4s77bv5wj6kj0zyj517acydqvd2sbxgl2fd22c1igwj9iqyl"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; - PubScore = derive2 { name="PubScore"; version="1.8.0"; sha256="18bmzvv6mxrdlh297i29q24vi5rc4x2mjaryi5asiki186x0hy8d"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; }; - PureCN = derive2 { name="PureCN"; version="2.2.0"; sha256="1rd6a9x2jsha5l1nw2xn57q7nr7jxjg1wylnv7iib77nwrb0sjfv"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; - Pviz = derive2 { name="Pviz"; version="1.30.0"; sha256="0ipsf10h9qbpmc4jj04x5gvxkbihicza8fw3qlh5qmwj83xyw5py"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; - QDNAseq = derive2 { name="QDNAseq"; version="1.32.0"; sha256="0s360s72lfn9vjml88gg1m40n61s0dc66ilzgfjdcp65djdxxfvm"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; - QFeatures = derive2 { name="QFeatures"; version="1.6.0"; sha256="1yz1wh81v4d7y109kbr51gial69l0g6mv7n28askbzpn5dl4gvwp"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; - QSutils = derive2 { name="QSutils"; version="1.14.0"; sha256="0bbyk568z0bd2pmlw28hdibbwvfhs6wgcjdvyr8az6kqpz3yg326"; depends=[ape BiocGenerics Biostrings psych]; }; - QUBIC = derive2 { name="QUBIC"; version="1.24.0"; sha256="00annp5savi5z4f7m7kwsnijmhg7z4pwfj4lapr2wpsl51kga4fj"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; - Qtlizer = derive2 { name="Qtlizer"; version="1.10.0"; sha256="023yr1szcsz8x78k2209242c21drszcmiyb7bs1n39qd2vi8ilhg"; depends=[curl GenomicRanges httr stringi]; }; - QuartPAC = derive2 { name="QuartPAC"; version="1.28.0"; sha256="1xfnnk896kng4m694rablk8gxq254d7nf5y8iz1gb0s688b20lyh"; depends=[data_table GraphPAC iPAC SpacePAC]; }; - QuasR = derive2 { name="QuasR"; version="1.36.0"; sha256="1m0c0rdakkdn4rr6dh51c6rs40cbxkvz93n6s0m2kc6fqjv9zplf"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; - QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.30.0"; sha256="0cq79377z73hhcvhzv5l8frss6wz6hmf7zvjh4v9jvrk8n0p3h7g"; depends=[dplyr Rcpp yaml]; }; - R3CPET = derive2 { name="R3CPET"; version="1.28.0"; sha256="1igxbx8wvf7jgzss2zv9w8bq7pdqr8g64dqm4j9nv20gagz6sh9m"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; - R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.46.0"; sha256="1vxgkhigmsk4f1cdn83rr8ysw3mj1lp0h7wjmxmm9pj97ig31v9b"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; - R4RNA = derive2 { name="R4RNA"; version="1.24.0"; sha256="12861114yw3dx2acqk2if5h11agfsdzl23pxzqy23gymxc1wm0z1"; depends=[Biostrings]; }; - RAREsim = derive2 { name="RAREsim"; version="1.0.0"; sha256="1q2cvjikisxzpiz9zqgldlyrz0ah19vnapn4c2p4yc1k5fqhc02f"; depends=[nloptr]; }; - RBGL = derive2 { name="RBGL"; version="1.72.0"; sha256="0ph089vxla49sng0pdwiyh9rpk9i96cbsx5q2jn46jj4x51ijc7y"; depends=[BH graph]; }; - RBM = derive2 { name="RBM"; version="1.28.0"; sha256="1yiyd78nkjh24dvj3vj86mc44bw9bb9maarji0w307bw71s94mgk"; depends=[limma marray]; }; - RBioinf = derive2 { name="RBioinf"; version="1.56.0"; sha256="1mm3i5fqvqal2y0lq2cdngy445dp8yv8rzvi59bjviwqzxp44m63"; depends=[graph]; }; - RCAS = derive2 { name="RCAS"; version="1.22.0"; sha256="05sj2ab7bxgf41gkmjaskhqm0198xlir1sw3f73x8rjg14rssmqf"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; - RCASPAR = derive2 { name="RCASPAR"; version="1.42.0"; sha256="0zzg0gsg6hcinskdj3625vk1pbzaxsfxf2m9d17gzc2jydjysfbz"; depends=[]; }; - RCM = derive2 { name="RCM"; version="1.12.0"; sha256="0v1dv69qlv0knaf96imi94mbpr8qz2a46hjn6rw7yfzfgsprnx7s"; depends=[alabama DBI edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; - RCSL = derive2 { name="RCSL"; version="1.4.0"; sha256="1b15jjd6v2slw94fd54y2xf638yrzqaw6qs4vzwan5ima6yl0bhk"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; - RCX = derive2 { name="RCX"; version="1.0.1"; sha256="1xrarll3fh8a3zgv507944klyq7kym87rpn7rk1kfsxs3zd94fsq"; depends=[igraph jsonlite plyr]; }; - RCy3 = derive2 { name="RCy3"; version="2.16.0"; sha256="0xbvi9k4lvva4njmgcjz2yjbhjp7n6if5622swnkyb01s178a7vi"; depends=[base64enc base64url BiocGenerics fs glue graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; - RCyjs = derive2 { name="RCyjs"; version="2.18.0"; sha256="105spxlmmr23h43hrym10h5jgizq3m5g1kmxzf42q8jzns042dqs"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; - RDRToolbox = derive2 { name="RDRToolbox"; version="1.46.0"; sha256="13c7701g9n6irqpfc1bcamg2pys8vsryq1y6q9mw28im73wf0caw"; depends=[MASS rgl]; }; - REBET = derive2 { name="REBET"; version="1.14.0"; sha256="03v6qdc9hz2p74s64v0vk4wxc4nkl4g465ygdnnyxk2qz99q79qa"; depends=[ASSET]; }; - REDseq = derive2 { name="REDseq"; version="1.42.0"; sha256="16iqqzk7jlwb3yzsamxmpm0424a7hphv5ajbfw9fzmsshll3q18p"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; - REMP = derive2 { name="REMP"; version="1.20.1"; sha256="0176p0bjlmyp95ssiqkziyasm247n2jgv2ijcl34zy1d5jndv4gj"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; - RGMQL = derive2 { name="RGMQL"; version="1.16.0"; sha256="1bwcqh6hmxjwzszd2747yc9wadh1jj0dm04d9752vyf1hz5nnhkv"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; - RGSEA = derive2 { name="RGSEA"; version="1.30.0"; sha256="0p03fxf725c9ayk29ah48jd96ry3i0360mxphzmsdycc3sna6mrq"; depends=[BiocGenerics]; }; - RGraph2js = derive2 { name="RGraph2js"; version="1.24.0"; sha256="14ffqx419vd5qz1fbbdszvzvx4m8mqmd7sh4d0dyxy37k19l60q3"; depends=[digest graph rjson whisker]; }; - RIPAT = derive2 { name="RIPAT"; version="1.6.0"; sha256="0xqj14lgvgs2mms0khxvjl5pkacvv5b6vg5acn01dhg3bs83lbr6"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; - RITAN = derive2 { name="RITAN"; version="1.20.0"; sha256="0scn410jri1a1zr1j9kbk9884js6ps1v9a873fpzfdrrvb31dksd"; depends=[AnnotationFilter BgeeDB dynamicTreeCut EnsDb_Hsapiens_v86 ensembldb GenomicFeatures ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; - RIVER = derive2 { name="RIVER"; version="1.20.0"; sha256="1x02pkb7ff9zxlmwcdc8ck841bikhm8rpsn4jlkywy22s4mb074w"; depends=[Biobase ggplot2 glmnet pROC]; }; - RImmPort = derive2 { name="RImmPort"; version="1.24.0"; sha256="0ay2604wdksppbhgrd9zig380r7392zjaypfv6gd011wjh8gh05f"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; - RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.20.0"; sha256="0m8rsvlyicp2bk6ax5sfssw6378z42d9bdp22v3j33vii3mla1fi"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - RLMM = derive2 { name="RLMM"; version="1.58.0"; sha256="0rmir7ab8bs45c1q49yf6apx9i4sr673b33zw12hmp76zlgabwsi"; depends=[MASS]; }; - RLSeq = derive2 { name="RLSeq"; version="1.2.0"; sha256="0lka8q9hpv3kx8xlx6glsdhc1z7y0ihfdi2qglsggy4iyzdnav0d"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR RLHub rtracklayer valr VennDiagram]; }; - RLassoCox = derive2 { name="RLassoCox"; version="1.4.0"; sha256="19kvnhxwvw652cng9ngq2d9dnfaqxxd9qjsvhaqv8kb4kz2r9bfb"; depends=[glmnet igraph Matrix survival]; }; - RMassBank = derive2 { name="RMassBank"; version="3.6.1"; sha256="013j46ypgvr99j2grcxp251q8178a0x0xcsn9spdwba0cis2p836"; depends=[assertthat Biobase ChemmineOB ChemmineR data_table digest enviPat httr logger MSnbase mzR R_utils rcdk Rcpp RCurl readJDX rjson S4Vectors webchem XML yaml]; }; - RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.8.0"; sha256="10d320bcdmn6mzcvivbphygnirs1znf1rnmirhzl1f978m50jp9j"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; - RNASeqPower = derive2 { name="RNASeqPower"; version="1.36.0"; sha256="0bv9xkkg30vr9lmybiialh0mimcvmcrsf0wm23r6jsmm8pqgv7wd"; depends=[]; }; - RNAdecay = derive2 { name="RNAdecay"; version="1.16.0"; sha256="0skv7hx83yq9c426am81555imdbbkysckv8py5ng3q56r67cgy45"; depends=[ggplot2 gplots nloptr scales TMB]; }; - RNAinteract = derive2 { name="RNAinteract"; version="1.44.0"; sha256="1f0kvpmkq6djfr6qx95fhmb2wblzz0iaffwwrqi6ibwbp4s3dmzv"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; - RNAmodR = derive2 { name="RNAmodR"; version="1.10.0"; sha256="0nih7ix5bw9zc7grlw8a0yipx15r6n9ias1y30i6gr0z612whv6g"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; - RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.10.0"; sha256="0qdh9h4vw0fc3dnsm1mb232pladp5hc0k8irxdmrs5akfqfcfc29"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.10.0"; sha256="17br1v3v36h11b3hc3qnxdic9zk2q5g8p99h2350nhq54z54g9j3"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; - RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.10.0"; sha256="1g4ds43xaw6rzj5jxnahkbgpgarfjp4mygh8q5a80b7zi8z4w948"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAsense = derive2 { name="RNAsense"; version="1.10.0"; sha256="19r4vvz9mj1jw5cw1afs4sx010vd2ssz2c4qspi2y6x12gnbhmnf"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; - ROC = derive2 { name="ROC"; version="1.72.0"; sha256="0yfq0d0j2bzqdnjs6l2h6p48kmv9wfphlqym3brgndlnadipq1v2"; depends=[knitr]; }; - ROCpAI = derive2 { name="ROCpAI"; version="1.8.0"; sha256="0vakvv2n5pzsfyy0iryafysrwrpzl15mg1wq1qs8y7hrrpc18cry"; depends=[boot fission knitr SummarizedExperiment]; }; - ROSeq = derive2 { name="ROSeq"; version="1.8.0"; sha256="00cp1293359s3h73xwjfnhdvl04h61f5jjbkzqan2q59j8bc5n92"; depends=[edgeR limma pbmcapply]; }; - ROTS = derive2 { name="ROTS"; version="1.24.0"; sha256="021a578p8kcl5yd9myiy0h2qp10r30ggnip2kp6xs7dx8nzic96r"; depends=[Biobase Rcpp]; }; - ROntoTools = derive2 { name="ROntoTools"; version="2.24.0"; sha256="1p84vx25lgynsbb7ng62wmbhjhk2qippfpar9nsbv7vhdl6yriyy"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; - RPA = derive2 { name="RPA"; version="1.52.0"; sha256="0kwipm60h3g02xm0v8x8c18az4zqm2fqsn9m3n2wvy59lyzgd4cp"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; - RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.8.0"; sha256="1mvqwrm1y0vij66gdwgpf5l1h660wsi9jzjfs4ihw3zm4cb0q5pp"; depends=[]; }; - RRHO = derive2 { name="RRHO"; version="1.36.0"; sha256="1ryfalc6h465w5zv03jq8cgbslvzk70l83bfj5cy2fcxsjgzi1z9"; depends=[VennDiagram]; }; - RSVSim = derive2 { name="RSVSim"; version="1.36.0"; sha256="1x72ksb9r7850xpmi5qhw6fnmz6p831mdf1s9s9bgn67kz7940d5"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; - RSeqAn = derive2 { name="RSeqAn"; version="1.16.0"; sha256="0i16z4vqp7mqjjkn8xzzxadh88r3ikl04h7jkjnn777cn4596svm"; depends=[Rcpp]; }; - RTCA = derive2 { name="RTCA"; version="1.48.0"; sha256="06bcy13i6j2y4fxizhg9k6yv2grvb2fi4w98f3q4pf8b6w6hcczb"; depends=[Biobase gtools RColorBrewer]; }; - RTCGA = derive2 { name="RTCGA"; version="1.26.0"; sha256="1r8ivxgqi9c33rzg0bx699grgzpikiqhbdznnck1daj66ab78shs"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; - RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.26.1"; sha256="12h5lj1a6v8cbmxvg8cw0iqzci3sl6ixv49qzzyz5srq4kidh40j"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr limma RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; - RTN = derive2 { name="RTN"; version="2.20.0"; sha256="06gxc3qpvkd488m4wsy0xqwgdpfakas934k3pqs8knq5ivc5hy2a"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; - RTNduals = derive2 { name="RTNduals"; version="1.20.0"; sha256="0lglzmd4hsc4nlf6j7c5ixgkvs5dxgb1jmr3b5080flcn24s5a3p"; depends=[RTN]; }; - RTNsurvival = derive2 { name="RTNsurvival"; version="1.20.0"; sha256="1vw185sskn59b647gfk1hqdmbm4kkb856wmv8dqlnw88mj5pls14"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; - RTopper = derive2 { name="RTopper"; version="1.42.0"; sha256="01rn7ak7h7q9clwkbgal8n9ivb27ppzqq9s3sxp44s3dz6x07835"; depends=[Biobase limma multtest]; }; - RUVSeq = derive2 { name="RUVSeq"; version="1.30.0"; sha256="001h07b074hvj16bjdp9llb9psphw7r6kpwhq61bj4519y6lpg7x"; depends=[Biobase EDASeq edgeR MASS]; }; - RUVcorr = derive2 { name="RUVcorr"; version="1.28.0"; sha256="1fwmghmzyjfbifb4mchp64v3n9fwzdc0bzlcvb96q6d1vwb9vs9k"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; - RUVnormalize = derive2 { name="RUVnormalize"; version="1.30.0"; sha256="02jphy9y90jcl1i2pmsai188whb7ivb4zq0l2whzsz8hyanqgbwv"; depends=[Biobase RUVnormalizeData]; }; - RVS = derive2 { name="RVS"; version="1.18.0"; sha256="0yzzbj31gb86gvcchs6bbi69hbd39f2y4d3zv1g4lmyhbxzqw6zb"; depends=[GENLIB gRain kinship2 snpStats]; }; - RadioGx = derive2 { name="RadioGx"; version="2.0.0"; sha256="0biajaa10skv55r7g8gfa1gkz9cav1g9rr9bj6zfqdcyg4i9a9hi"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; - RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.20.1"; sha256="0j784nixky7rzfzwzmgfv7cd7x3lv1dkhnqg9j8g7jxgc8prha2v"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; - RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.16.0"; sha256="1cy4c1gw7gmz15hvl2bx6r4r1hjslymw74gmqir068qgbnn9jz86"; depends=[dnet igraph Matrix]; }; - RankProd = derive2 { name="RankProd"; version="3.22.0"; sha256="0rq14h9kjj84krgvfa09jbc5s8yks37fjbcv8z88daaib0j3fq2d"; depends=[gmp Rmpfr]; }; - RareVariantVis = derive2 { name="RareVariantVis"; version="2.24.0"; sha256="0m6r8ldilv8hl3qhvbxafv928f7xma7w1rj7nv0hzi21hg741kp1"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - RbcBook1 = derive2 { name="RbcBook1"; version="1.64.0"; sha256="1ivk4hjx1jzjg46cwwjmk7anqxwa9ddr34zf0xgbyfrbg25ilf44"; depends=[Biobase graph rpart]; }; - Rbec = derive2 { name="Rbec"; version="1.4.0"; sha256="0870yy8j77yw67y3ihyb10w8a6py33h4p27bgikqq2b9830f5cpw"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; - Rbowtie = derive2 { name="Rbowtie"; version="1.36.0"; sha256="1ya1irwshsyy9l1fj51b04nv1ahq7a47ck7q19h2cly6yskc4x1q"; depends=[]; }; - Rbowtie2 = derive2 { name="Rbowtie2"; version="2.2.0"; sha256="0dhdx27vrkhd4fak0qb5q9amlcpi97xhf3ry39zk0ifx5zpjynkg"; depends=[magrittr Rsamtools]; }; - Rbwa = derive2 { name="Rbwa"; version="1.0.0"; sha256="1rf43p87p5397cbh9znl0qvrplid102qd3bgf310kk3kpkjdw56q"; depends=[]; }; - Rcade = derive2 { name="Rcade"; version="1.37.0"; sha256="1x8a4kas3bd4dzlwwiw781l9j2xa4sqmwbzblmsc23cp7kfbvffg"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; - RcisTarget = derive2 { name="RcisTarget"; version="1.16.0"; sha256="17fnjkg6rjqj33v7slg81skqag10y6dc14g5iv69gqshjal4w4im"; depends=[arrow AUCell BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges GSEABase R_utils S4Vectors SummarizedExperiment tibble]; }; - Rcpi = derive2 { name="Rcpi"; version="1.32.2"; sha256="0rnwnybsllq2lh5c3v3pz5c010522wmhq2q8nlqws1yl4vyq82c2"; depends=[Biostrings doParallel foreach GOSemSim rcdk RCurl rjson]; }; - Rcwl = derive2 { name="Rcwl"; version="1.12.0"; sha256="1q10gzh3m46jaac1w5hhfv166vrh23q3fwn377cy0p0cq6mhqk9j"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; - RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.12.0"; sha256="1lcx926y437jkphldnydw71k64mibgh5k0cwxzsf8f9b0lwmhl02"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; - Rdisop = derive2 { name="Rdisop"; version="1.56.0"; sha256="0cy1m1mch6d7csvlaacb5c54nz3f4caddjyfwbxq74qbzgx8mq07"; depends=[Rcpp]; }; - ReQON = derive2 { name="ReQON"; version="1.42.0"; sha256="1f5pplm8fy3wvl0b6n18gph4dq9i9x5qiyjrj0bk0kwlkbpba74r"; depends=[rJava Rsamtools seqbias]; }; - ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.4.0"; sha256="1v4r1jybffjjz45ya2a8vx81i5fm911vqrba5qc846c5mikwxifp"; depends=[data_table doParallel foreach httr jsonlite magick]; }; - ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.10.0"; sha256="1al69vrxsc3yw7d7vi8zvx6s5cac9dm0dzhkd96gqixjfr8lbsiq"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; - ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.4.0"; sha256="07psjmygwvjkrz4dsgsa6hbw15dn97lkl5h1hk386yj94d5aplbk"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; - ReactomePA = derive2 { name="ReactomePA"; version="1.40.0"; sha256="1fd72m2afxbbvbgwy8knp6fiq1h561plmsh4r8a08w21ngmkz2s5"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; - ReadqPCR = derive2 { name="ReadqPCR"; version="1.42.0"; sha256="1999bn50w4sm8lr8ly6n773kswffcyrj3l6if37z1c17krfp58vl"; depends=[Biobase]; }; - RedeR = derive2 { name="RedeR"; version="2.0.1"; sha256="163rxsnj00nyxy96jx36z08wahbxr5lgh5r7rlk2kc1r5mv9hypn"; depends=[igraph]; }; - RefPlus = derive2 { name="RefPlus"; version="1.66.0"; sha256="0q0jklcbf7przhaxdb4w2qalin7ypds8s6v1yjlriqj62zkvd9bk"; depends=[affy affyPLM Biobase preprocessCore]; }; - RegEnrich = derive2 { name="RegEnrich"; version="1.6.0"; sha256="0nfdnbw69dl6zba3mrvjb1v4h8avgn30kzpfwl5fi5n07x6s7xpb"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; - RepViz = derive2 { name="RepViz"; version="1.12.0"; sha256="1y60br7rk1834izrsi74cnmw90klxdxgbwhlxcqsmvr3r1nblgwq"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; - Repitools = derive2 { name="Repitools"; version="1.42.0"; sha256="1jasydq3wai7zxkgjph7fgy77i65qrsf520chaq474xf1j9hr9j8"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; - ReportingTools = derive2 { name="ReportingTools"; version="2.36.0"; sha256="0r8cdqzfh1jxkghhk3j8x3y9kkmdyg9ibfhsic15jqkmp1im6khh"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; - ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.6.1"; sha256="1530706c7b53h9m8smgnaj63rgdbm3hd09n7jwy6zc0y6qcffckd"; depends=[DelayedArray Matrix S4Vectors]; }; - Rfastp = derive2 { name="Rfastp"; version="1.6.0"; sha256="06zzmdym2x72a99853qvh1a4snbmgysnmi6yckakdg6isizxm14p"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; - Rgin = derive2 { name="Rgin"; version="1.15.0"; sha256="1x5zj2d5rvsr2xh0ifpnrys9v91dal1xxhv5mmk16rs8wzwqpqba"; depends=[RcppEigen]; }; - Rgraphviz = derive2 { name="Rgraphviz"; version="2.40.0"; sha256="1r6ff7w2bmyfl1vzjvpgnhb8f5arwjlpab8fw5ph8fgyiqbcx94l"; depends=[graph]; }; - Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.18.2"; sha256="1jpb8h7c724yz51zjfqs90bsqxgmy1rry2ra9qamsgqpr2j9764g"; depends=[]; }; - Rhisat2 = derive2 { name="Rhisat2"; version="1.12.0"; sha256="0hzair41l47kzykymd169a34pfhb98vrjgkgdf15m17csyz7pnv7"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; - Rhtslib = derive2 { name="Rhtslib"; version="1.28.0"; sha256="07kws6afkxbmxq4w357mwwl712pdd16alvz7iqijjd2x7rjchj2f"; depends=[zlibbioc]; }; - RiboCrypt = derive2 { name="RiboCrypt"; version="1.2.0"; sha256="071y96ilsb9l5jfdsyhjpm69aqz8v8hjis2izvqwvds4ia2j1mhh"; depends=[BiocGenerics BiocParallel Biostrings data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges ORFik plotly rlang]; }; - RiboDiPA = derive2 { name="RiboDiPA"; version="1.4.1"; sha256="1qr7505kvgabxmr5mp4smvz0x7pwp6n64s60iynsz08r2p3cf77c"; depends=[BiocFileCache BiocGenerics data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; - RiboProfiling = derive2 { name="RiboProfiling"; version="1.26.0"; sha256="08m4rc530bkzcc43iwzg2fw9cjlf4wc2d8akv5vblsb42xdn8sqp"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; - Ringo = derive2 { name="Ringo"; version="1.60.0"; sha256="1znmxzp1g1jim5za2gi7mk0r2ac4q3wd609xncvq23s0jww0nzpc"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; - Risa = derive2 { name="Risa"; version="1.38.0"; sha256="0l3k04s0wh82bfhy561m2j7zj2ckx1rdgvlbdnbkx3qr6d905cj9"; depends=[affy Biobase biocViews Rcpp xcms]; }; - Rmagpie = derive2 { name="Rmagpie"; version="1.52.0"; sha256="1i9cs3jxg9izskq2n2f4n5k9dkivnm64knmzgmdl9xhsqdabih2v"; depends=[Biobase e1071 kernlab pamr]; }; - Rmmquant = derive2 { name="Rmmquant"; version="1.14.0"; sha256="1s2sb2f4kc20anmhcrgy988yam1iyk383ia7mci0gb32dsblrpfk"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - RnBeads = derive2 { name="RnBeads"; version="2.14.0"; sha256="1r5njn90893j3p0sz335w8xq0fkf6q7ai2w23qacnm2zfhh6k345"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.6.0"; sha256="1v5bjdwzv0kram0q0cyghjn8cc2zd58qbbz6s8xa12avl0cbnxhn"; depends=[biomaRt dplyr edgeR ggplot2 ggpubr heatmap3 KEGGREST matlab Rcpp recount RnaSeqSampleSizeData SummarizedExperiment tidyr tidyselect]; }; - Rnits = derive2 { name="Rnits"; version="1.29.0"; sha256="0m6afic9p7synmngkn7zyf53saqnrmgydjbk41k0w814i46dcd6h"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; - RolDE = derive2 { name="RolDE"; version="1.0.0"; sha256="0jynxvwrz8f40sj2iha3g25znv4z097hm3snhzm36bs0h7nvv8sq"; depends=[doParallel doRNG foreach matrixStats nlme qvalue rngtools ROTS SummarizedExperiment]; }; - RpsiXML = derive2 { name="RpsiXML"; version="2.38.0"; sha256="0x4nph4xss4piq4fgijjjj33yrqqfdbsgn9wvqy17nglvz5gi7bi"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; - Rqc = derive2 { name="Rqc"; version="1.30.0"; sha256="11j8m69zdcmpjb3xzr4s8sqmv8aqgl8q7k81gnd09l3nyjzy0h1k"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; - Rsamtools = derive2 { name="Rsamtools"; version="2.12.0"; sha256="1wll703if12qrn0d11ljwf7rqhs4lb27fzyyz1hqwvzn3v361s10"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="2.10.5"; sha256="0n9qqbkj2lgxkia6kfpfz06wbc1lvw24qyvn88f48zw5nh0rsrs2"; depends=[Matrix]; }; - Rtpca = derive2 { name="Rtpca"; version="1.6.0"; sha256="1cv0yj3j2cndyb0827raw3x7gi3li0nj2q0s71apj2bvl74y2h27"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; - Rtreemix = derive2 { name="Rtreemix"; version="1.58.0"; sha256="0n9pmmn0mzj6zi303zzkmcww8f23xydgvw6bz5cx7sswlqvsixvm"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.34.0"; sha256="0j3ybhzdhlhw8527nks3mjja28asjya2n0m0rjkh4bw66rkfys4k"; depends=[BiocGenerics]; }; - SAIGEgds = derive2 { name="SAIGEgds"; version="1.10.0"; sha256="0qvwyaiqkgdi9aqhx7w3cv1rrap5c6zcnprac6lixp5ib9a5nc7i"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; - SANTA = derive2 { name="SANTA"; version="2.32.0"; sha256="0d501mb84a95n3r8zirrhkm6l7kl47rfkzcrag3cpmd2zl0nppq0"; depends=[igraph Matrix]; }; - SBGNview = derive2 { name="SBGNview"; version="1.10.0"; sha256="0d4phx2bc77cvvy7lkn2mvkwwy5mld73rpis8q88c85sda07yakl"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; - SBMLR = derive2 { name="SBMLR"; version="1.92.0"; sha256="05qs42b8ssxqlapcy9cn99hkgr3yak0bb97zbc548wp1yfhwmdqb"; depends=[deSolve XML]; }; - SC3 = derive2 { name="SC3"; version="1.24.0"; sha256="179x0x9zr5ffqhr33va3x7ph5r1mzhy1j9xdmmf8qga0jw80alz2"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; - SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.38.0"; sha256="0riz6fmq9rsdkpfwyzva15xrfhdpab42yn2zklv6663pwha64wjj"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; - SCANVIS = derive2 { name="SCANVIS"; version="1.10.0"; sha256="136kzmgpyn3jxnsc60x6x93zb5c65ji5221z89178yfvr7h48v17"; depends=[IRanges plotrix RCurl rtracklayer]; }; - SCATE = derive2 { name="SCATE"; version="1.6.0"; sha256="14zm5y3m03wxjd8fbl0hn5fvmyv5hlwcfh38hzzv68jfmhyyasfh"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; - SCArray = derive2 { name="SCArray"; version="1.4.0"; sha256="1yd251b5wdgjg9g2xjj0b4h5bbfj9mhpsll5kzq5cmw31qz6q6b9"; depends=[BiocGenerics DelayedArray DelayedMatrixStats gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SCBN = derive2 { name="SCBN"; version="1.14.0"; sha256="1hg2rwaag0vnh8wq2lwi62qjk13apdwhhbxnp93sry4h7gvkpxaa"; depends=[]; }; - SCFA = derive2 { name="SCFA"; version="1.6.0"; sha256="0kqwjhrjqj8q9zijajyyw7yy9dbzacard8imgc0p3p9iyssa9g9n"; depends=[BiocParallel cluster clusterCrit glmnet igraph keras Matrix matrixStats psych RhpcBLASctl survival tensorflow]; }; - SCOPE = derive2 { name="SCOPE"; version="1.8.0"; sha256="1vif96msq93j0rmz5ak898wbjbw6l649n0jhbd5jqjyg9h47rm8s"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; - SCnorm = derive2 { name="SCnorm"; version="1.18.0"; sha256="0bd1y7nakacc1hl6dn8g47wx1z132qpi459626szc2ahmi62bq5d"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SDAMS = derive2 { name="SDAMS"; version="1.16.0"; sha256="1gqyzd3dmb3ba9ymjk4x9kbj10cx7iggbp3iv2a3nl2il7h3kkq1"; depends=[qvalue SummarizedExperiment trust]; }; - SELEX = derive2 { name="SELEX"; version="1.28.0"; sha256="0kf81k9r5rsihx7w5rh0hb7b6pwmn0qxikwy443q6j30m2b26rbw"; depends=[Biostrings rJava]; }; - SEPIRA = derive2 { name="SEPIRA"; version="1.16.0"; sha256="0dz7d0vvzg9ak2gs2pgciqabpjgqwhs236gfa48m71cy13khsdpz"; depends=[corpcor limma]; }; - SEtools = derive2 { name="SEtools"; version="1.10.0"; sha256="0s382ph3v3ynx5j90rzsh6ix9h8776m7dmn0pr8shc9gy5ixv54z"; depends=[BiocParallel data_table DESeq2 edgeR Matrix openxlsx S4Vectors sechm SummarizedExperiment sva]; }; - SGSeq = derive2 { name="SGSeq"; version="1.30.0"; sha256="0hz45367i70wl97silnimicdvs3g41zyf8syc6igz6471wbwkxwp"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; - SIAMCAT = derive2 { name="SIAMCAT"; version="2.0.1"; sha256="05r9sv41l812hnz6dq2hzgk29y25raqqzn0mcw4lcqv6zlm60k0s"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo lgr LiblineaR lmerTest matrixStats mlr3 mlr3learners mlr3tuning paradox phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; - SICtools = derive2 { name="SICtools"; version="1.26.0"; sha256="1vj5y3xysvf113f2iy2n10yzm3xy30m7g3brirydrj9vk73ssdcs"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; - SIM = derive2 { name="SIM"; version="1.66.0"; sha256="0kvayxf4h7l9410v0gafbg31xkc8xcl1cbilfgln4l5pv42wnrl4"; depends=[globaltest quantreg quantsmooth]; }; - SIMAT = derive2 { name="SIMAT"; version="1.28.0"; sha256="06f4py4gk2gqdas1gwz43by1m4k5b617l58a36rm294w9hvwi03b"; depends=[ggplot2 mzR Rcpp reshape2]; }; - SIMD = derive2 { name="SIMD"; version="1.14.0"; sha256="1sbqfrawrh2yndzwl0c0dlpsj5zy264r725r4awzzawnxac3c0k7"; depends=[edgeR methylMnM statmod]; }; - SIMLR = derive2 { name="SIMLR"; version="1.22.0"; sha256="1y26296n42w18ra9c35qfqlxgxk16hz051139g82ki9aydh6b0mm"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; - SISPA = derive2 { name="SISPA"; version="1.26.0"; sha256="17zljr5vr9zh5cwah6dya3nyzv1266wlfm558r8j1zccirahjvf7"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; - SLqPCR = derive2 { name="SLqPCR"; version="1.62.0"; sha256="1336jfm13yhn1anzl7kjgqhvvk6gy8h0ikzi9iqrrm0sxhjyyb74"; depends=[]; }; - SMAD = derive2 { name="SMAD"; version="1.12.0"; sha256="1qwdwslb5sx07sgjafv7yd69isbn7sf60yisfry64bkc3h8rrmmb"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; - SMAP = derive2 { name="SMAP"; version="1.60.0"; sha256="11c0br8kv93bzdn4y4xrkl6pkqdpn4zzyx31dqkq5bz4vvjfmz47"; depends=[]; }; - SMITE = derive2 { name="SMITE"; version="1.24.0"; sha256="0klqxzaypidfzgcxfa1lnrlsv08zkqwf5y82ldac7bpnnyr91z1b"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; - SNAGEE = derive2 { name="SNAGEE"; version="1.36.0"; sha256="0zjn0qjyhpnfzabgi5rv1zhblfwz4rdldp7pa18zkayflhfhql5i"; depends=[SNAGEEdata]; }; - SNPRelate = derive2 { name="SNPRelate"; version="1.30.1"; sha256="1j3cz45g0bm48hqm6zm8zyfsmjb08cb7p52yw8r4jmld3jci33cr"; depends=[gdsfmt]; }; - SNPediaR = derive2 { name="SNPediaR"; version="1.22.0"; sha256="1qg1arrf9pv59hzmncmfhw9w2npk6mm068c6ghx527vja7g3lcxd"; depends=[jsonlite RCurl]; }; - SNPhood = derive2 { name="SNPhood"; version="1.26.0"; sha256="186qcscxgpjxc3c875yvnc75xv4dmmjpy7ci2glabw9sy5p2vz2a"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.4.0"; sha256="0xjrn2anfsw6d48lb2kp1zxj2d4cn6gr6wb6cfllwxiwdq635lyc"; depends=[Matrix mgcv VGAM]; }; - SPEM = derive2 { name="SPEM"; version="1.36.0"; sha256="1nnyx7jaqz2cj7zmm4dfv5n9m4willwv411q0wiqsjbgm60j37ak"; depends=[Biobase Rsolnp]; }; - SPIA = derive2 { name="SPIA"; version="2.48.0"; sha256="1s6mx463xgy8hdifksb824brmrr07k38yksdrbk38v0zniyns97w"; depends=[KEGGgraph]; }; - SPLINTER = derive2 { name="SPLINTER"; version="1.22.0"; sha256="1kvin1kma85p4q3jasm0q631dalndq021r4wx4vls34mhglhrrzx"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; - SPONGE = derive2 { name="SPONGE"; version="1.18.1"; sha256="071w946cdvc8x277893ji74l336j99j73k3cxawi64k39c1qqsnd"; depends=[Biobase biomaRt caret ComplexHeatmap cvms data_table doRNG dplyr expm foreach ggplot2 ggpubr ggridges glmnet gRbase igraph iterators logging MASS MetBrewer miRBaseConverter ppcor randomForest rlang stringr tidyr tidyverse tnet]; }; - SPOTlight = derive2 { name="SPOTlight"; version="1.0.0"; sha256="1h6w02ya3fcg13rb0phzfx6qdw4mhbgsq6jai1h2jab8whcggfpn"; depends=[ggplot2 Matrix matrixStats NMF nnls SingleCellExperiment]; }; - SPsimSeq = derive2 { name="SPsimSeq"; version="1.6.0"; sha256="11symjnpyp6yb26071gnzgp3immhjyyzirwb6j7gnh8hmgzmcpz9"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; - SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.10.3"; sha256="0fxl2if1bnw79md4lkz8lq51j7hi05bhf2k66605xwgfmz5q9lyf"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; - SQUADD = derive2 { name="SQUADD"; version="1.46.0"; sha256="13g381j3xbzdh6xwmgf3d1jsr39zd523q1kldpw3cmp01asykcwm"; depends=[RColorBrewer]; }; - SRAdb = derive2 { name="SRAdb"; version="1.58.1"; sha256="11590a9zayqy4h1f9mfq9mdfj0d4i3amlb4q5vpc5ibir7l9a4bk"; depends=[GEOquery graph RCurl RSQLite]; }; - STAN = derive2 { name="STAN"; version="2.24.0"; sha256="18qa8fa6n9n965h0rwbsyfd14snh2n96rwfi1l1dg7wdrksyr8wx"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; - STATegRa = derive2 { name="STATegRa"; version="1.32.0"; sha256="157jm77mh12p5wdik1xm00p8r7x692gw5sb2dphkjf6fkc53sxk0"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; - STRINGdb = derive2 { name="STRINGdb"; version="2.8.4"; sha256="1jn6080v6097zpqsr4gfbx31gqqdhpzjrk63avk3v3xwawmf2379"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; - STROMA4 = derive2 { name="STROMA4"; version="1.20.0"; sha256="14qz7napk9kmga7gvhp34zh0kdkwzqx57q79famz1lyanzvibcij"; depends=[Biobase BiocParallel cluster matrixStats]; }; - STdeconvolve = derive2 { name="STdeconvolve"; version="1.0.0"; sha256="092gsmnp70wqpw21yxicpm29qwp27zxz60d026i6mfszhd48abxx"; depends=[BiocParallel clue ggplot2 liger Matrix mgcv reshape2 scatterpie slam topicmodels viridis]; }; - SWATH2stats = derive2 { name="SWATH2stats"; version="1.26.0"; sha256="0n6ap58lbn3rbaqb50244byam2fc62q85zl2a5bws5bsfccnvzk3"; depends=[biomaRt data_table ggplot2 reshape2]; }; - SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.50.0"; sha256="0p4a9f4aa714jn1z4r9177jqin11qi3ln3pdjb0vblcj435yhpdm"; depends=[]; }; - Scale4C = derive2 { name="Scale4C"; version="1.18.0"; sha256="0n63sp8jalm8il1vyl1ls9cbbzs3jb227kq6rdw436mmnk5d7hik"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; - ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.4.1"; sha256="05gxr41nb1jqhv357rfha4062kszvrmkr36mhkjsf7kgnzf0p8hz"; depends=[DelayedArray Matrix S4Vectors]; }; - Sconify = derive2 { name="Sconify"; version="1.16.0"; sha256="0nm6z5dmnqd1bw1xpw7ljjlrbccqjmpcb1ds83yjy5wc9i0m2jdb"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; - SemDist = derive2 { name="SemDist"; version="1.30.0"; sha256="01pjcxhbyhbdcfw8jrjq04n4xi659ah3mx176rf0x7dll732y161"; depends=[annotate AnnotationDbi GO_db]; }; - SeqArray = derive2 { name="SeqArray"; version="1.36.3"; sha256="0b1zcays48s23k3z7p0k7l6sb89a8zn73xpdg38hbna016g92wjx"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SeqGSEA = derive2 { name="SeqGSEA"; version="1.36.0"; sha256="0jpj0hksbbgzfr0k5f4zwm2ivdwrm00mcz8n8q0m35k44bj311b0"; depends=[Biobase biomaRt DESeq2 doParallel]; }; - SeqGate = derive2 { name="SeqGate"; version="1.6.0"; sha256="0fa5spf66d1x0747ikgk822mpcjbvb0y4slmq636njxgi6n739wk"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; - SeqSQC = derive2 { name="SeqSQC"; version="1.18.0"; sha256="1687klbjypwhd6qg7s965s7n47wf0kyfsn734wg27zv6mvfhck9r"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; - SeqVarTools = derive2 { name="SeqVarTools"; version="1.34.0"; sha256="1giabkg0q9fyqqm1fqw05h6dhvs58w3x1d8jp7xddh5dqisk4b3a"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; - SharedObject = derive2 { name="SharedObject"; version="1.10.0"; sha256="0z33jp0vlx2d9wn8zi28hd5ilzp1rql5zvylx1vm71bfsjpy7nlc"; depends=[BH BiocGenerics Rcpp]; }; - ShortRead = derive2 { name="ShortRead"; version="1.54.0"; sha256="0303198b4v2wjah9kc829kn01030996l6di4jpf8q5ccd212rjhq"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; - SigCheck = derive2 { name="SigCheck"; version="2.28.0"; sha256="0xagj5zfm25d8ld497pvbx23pwbds1pkg68zlk908zwhy7g26512"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; - SigFuge = derive2 { name="SigFuge"; version="1.34.0"; sha256="1kqpkl6b742z9jldnxkji7ng4w9yaj76s86njkw94qyzrvkn6xcg"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; - SigsPack = derive2 { name="SigsPack"; version="1.10.0"; sha256="1c3xnk90gy60jzjgydg0vr1xmlcad4dkk45skyh42abzqxlwj5yd"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; - SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.34.0"; sha256="1ndim53fhx0naj1r5zwq4d655nbdvclfi40m3fqg891hzz370sd6"; depends=[Biobase limma mclust Ringo]; }; - SimFFPE = derive2 { name="SimFFPE"; version="1.8.0"; sha256="0i2ah49bajhjf0yjjhm84vpc8brs8y3c016l4sbwhpb2nhcqgvgj"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; - SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.18.1"; sha256="13iq480xbgqriyjrlknamym1wspdh54i9jahgvk726ksfzf19vx0"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; - SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.8.0"; sha256="0c0fsr1b0mc5a7qfa7cjipx50fscb120747c9xjp5n55jv5hwd9c"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran SIMLR stringr]; }; - SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.4.0"; sha256="0kayi1cahn57ysdhykk4h3a93ajnr41p7xbf1v04mvbz9gq9piqf"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; - SingleR = derive2 { name="SingleR"; version="1.10.0"; sha256="0qbyc6ygw2xv3li9187i3axsw6ihwpa7pkvxvy9cagv7xck45c5y"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; - SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.32.0"; sha256="1ydnp54laznzpi08s403kxhnr5nqhvm3iilaxlcdlz0ngxhm6vx6"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; - SpacePAC = derive2 { name="SpacePAC"; version="1.34.0"; sha256="0i0bl55cbrhj9zvlvh3wbxgjaq5g1xvxdd6gpnj0barr5p8bx7x2"; depends=[iPAC]; }; - Spaniel = derive2 { name="Spaniel"; version="1.10.0"; sha256="19280ardr91mk0l60nxprq9405drwmnc4jlbrzx1lz6951k07zj0"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; - SparseSignatures = derive2 { name="SparseSignatures"; version="2.6.0"; sha256="1ks4279slgyn2fnwmafgcmmhq69fx6jpvafjahpvnvh6jlf9dxy9"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; - SpatialCPie = derive2 { name="SpatialCPie"; version="1.12.0"; sha256="06axh7wnf19hs7y6skik2yff3xyd06y4x9jrx1996hjliyhdv88v"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; - SpatialDecon = derive2 { name="SpatialDecon"; version="1.6.0"; sha256="12fyzsrgz76wndxk59p8aknxvj62g4b9k21hla4m2zj1cav46lhc"; depends=[Biobase GeomxTools Matrix repmis SeuratObject]; }; - SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.6.1"; sha256="1ddsdh6c1hwyaqf664ih0midfgc6crh17g2kx2glnzl29vhidr9i"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SpeCond = derive2 { name="SpeCond"; version="1.50.0"; sha256="051p6npzjpwagd0bnzpbdjcmgkasr8d74a42ppmlc9hsfg8pzqcw"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - Spectra = derive2 { name="Spectra"; version="1.6.0"; sha256="0kzz7par5zwk4qypicmz39d6bc4aqmflzzxfrpng2y3id7f15jks"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; - SpectralTAD = derive2 { name="SpectralTAD"; version="1.12.0"; sha256="0svv4mp6qk2k3clz8qdigzhawh4cglzwrb8frh5c6mgrgdbf53g5"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; - SpidermiR = derive2 { name="SpidermiR"; version="1.26.1"; sha256="0zwnl1pyclg994l8ikp13zlzh13daph113d8brg37cjmrvag4abm"; depends=[AnnotationDbi gdata httr igraph miRNAtap miRNAtap_db org_Hs_eg_db]; }; - SplicingFactory = derive2 { name="SplicingFactory"; version="1.4.0"; sha256="11kkr4c2ilwbr2h80aqiphxihwzs4sr23hq3q6w22w3wqqp7w24k"; depends=[SummarizedExperiment]; }; - SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.36.0"; sha256="1c8m8ab5jrwa8fryrdww4r41svkv864l2pr1hy1kil3njyaam0ml"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; - StarBioTrek = derive2 { name="StarBioTrek"; version="1.22.0"; sha256="10wf96rn0d1srwkp980www7w5jjxzrq1li8d7n7069z3ja01p4ca"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; - Streamer = derive2 { name="Streamer"; version="1.42.0"; sha256="0v2cgi38blr8ydsnkyf50raqh7kcjzz0bpw27sl4ayprxbqg8nda"; depends=[BiocGenerics graph RBGL]; }; - Structstrings = derive2 { name="Structstrings"; version="1.12.0"; sha256="175g2wpsvmh8vj3pqv55mczhfzxip64rilynprywll9njk72ayb0"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; - StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.12.0"; sha256="0f3x74ic3blg8nm5xlv79k0n8j3fpl98mmhfanqfzmdl0g3j6wx6"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.12.0"; sha256="1gj49s99sfcnvpd04h9y4mil1x4d4s33jadljfpwwavhqnbqbp0w"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; - SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.14.0"; sha256="04w3mb5f3wj8n82fzhfvhaq986k1nfji8v4w7pnrbprizq6a5clf"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; - SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.26.1"; sha256="02vlqzmslyijs09jl0gdjxqjjnnl4yqbqqqlb4vb7nr0fspmyz39"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors]; }; - Summix = derive2 { name="Summix"; version="2.2.0"; sha256="08f7dr3ni2dkd55m7rgfc9s6xxn1na9xp9vpnmr3rcimp9w6lhwb"; depends=[nloptr]; }; - Sushi = derive2 { name="Sushi"; version="1.34.0"; sha256="0adswrbzd93rhy3q56ypwkrk6155vd4zxapvznswyjlxp8ha813q"; depends=[biomaRt zoo]; }; - SwathXtend = derive2 { name="SwathXtend"; version="2.18.0"; sha256="02lkh200pvzps2vp0i4fjm96zi1fy8x21kvd0sa599yks7vimzp4"; depends=[e1071 lattice openxlsx VennDiagram]; }; - SynExtend = derive2 { name="SynExtend"; version="1.8.0"; sha256="0z30izc2wnbbhv19xf5dnnls8j42v38771yv78im75li88zxl91m"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; - SynMut = derive2 { name="SynMut"; version="1.12.1"; sha256="0smrqh2gk1cy8aqqrfx7whwdcsn5s57w6crkah2v50p1q9xbvgjm"; depends=[BiocGenerics Biostrings seqinr stringr]; }; - TADCompare = derive2 { name="TADCompare"; version="1.6.0"; sha256="0ramji5pn5w7ch83slflsw1wxhy451zw99rkhzb4slvgqi8v7bk8"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; - TAPseq = derive2 { name="TAPseq"; version="1.8.0"; sha256="0ls9l12fp04j2asr25cbz6xs38y3znhgcphfglbc13li3aa77gx0"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; - TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.8.0"; sha256="1npcdr3grm6qq4lqan6z9czkiwyz74pi741jwahzr0q93ah25kks"; depends=[ASSIGN BiocGenerics BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; - TCC = derive2 { name="TCC"; version="1.36.0"; sha256="077gj5f1iwb3xwy29p5q5fr3459nq9swybn7504dyxb93259qxzi"; depends=[baySeq DESeq2 edgeR ROC]; }; - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.24.3"; sha256="0visvfhzaf0p1rb5vjkmw1c91zfxpks8nl9nbl9xlnpm8lkmmkms"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; - TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.22.0"; sha256="1rav6nmbq8sn60x6cdc5zmvwwpiyfjc6n8hlzyjsg2yy3h3ij0qp"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; - TCGAutils = derive2 { name="TCGAutils"; version="1.16.1"; sha256="0lsnqxv0zbx4b3dfm3x5bf7i88y9wpq39faff84lrqk4nz9v4svn"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; - TCseq = derive2 { name="TCseq"; version="1.20.0"; sha256="0wqkbvg41xbkfc0xs44ckpzagwyfmqrdr69fj7am51khzv7gznrk"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; - TDARACNE = derive2 { name="TDARACNE"; version="1.46.0"; sha256="1ryrnaaq15sgji2j4js5vgsr2j7dl4dd0shmz7qayyq0k7ai2yaq"; depends=[Biobase Rgraphviz]; }; - TEKRABber = derive2 { name="TEKRABber"; version="1.0.1"; sha256="0pilrjrvd43jr8h6s2zcc6rk0p4q2l3bhz6lm344a7y5wyvccly6"; depends=[apeglm biomaRt DESeq2 Rcpp SCBN SummarizedExperiment]; }; - TEQC = derive2 { name="TEQC"; version="4.18.0"; sha256="1n0ifh86z4635x8hk4yv8n1ay35725i7y0n8j2gdp7si5y3nsfnv"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; - TFARM = derive2 { name="TFARM"; version="1.18.0"; sha256="0rmw7r6k8mb5672aap26liqblrmasxvccxd4fjw2sdb449wbd9dl"; depends=[arules fields GenomicRanges gplots stringr]; }; - TFBSTools = derive2 { name="TFBSTools"; version="1.34.0"; sha256="0l6j1r2cx7jfd39qzbyynk4jvzd81ys6yypzxjc97js4kkyrx29w"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; - TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.16.0"; sha256="0ckc4azfd9li5qd07ylprmds8qyq78bf8blbqgrkrgig9jpzn92s"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; - TFHAZ = derive2 { name="TFHAZ"; version="1.18.4"; sha256="07vfy39fa0nx685wj248q19h0733p773vhad893ds4ikbylmy6mg"; depends=[GenomicRanges IRanges ORFik S4Vectors]; }; - TFutils = derive2 { name="TFutils"; version="1.16.0"; sha256="1awzxj668ldh44fl0izvbm73cgm60rw93rfqfbhsflsx984rhzj9"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; - TIN = derive2 { name="TIN"; version="1.28.0"; sha256="1kgs45dif5fdmxlzhd6971mlhg0y1a41srnrx7irm4s4wckrpg4n"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; - TMixClust = derive2 { name="TMixClust"; version="1.18.0"; sha256="11ypr523hzbrynr1l68l7grn32499bl3j5wb7ic5i265r2kjcz4w"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; - TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.12.0"; sha256="12w43p3fpcn98h3p9brkc9fdsn0wn73bzyrz63gm43q1jw0zpizd"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; - TOAST = derive2 { name="TOAST"; version="1.10.1"; sha256="08pqriz9x32ixkjajh2wlh1cb7y8xmxna7by2qm5pjrrzblq96bh"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; - TPP = derive2 { name="TPP"; version="3.24.0"; sha256="0w0gwhvc2mra0jd81pskhqsdayikz3fpbcx0sf45iac918dd2m4l"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; - TPP2D = derive2 { name="TPP2D"; version="1.12.0"; sha256="1567r1v92skhlvjysh5v32h6c50grm8qm7wbwdvr52pjqc7kvfb4"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; - TREG = derive2 { name="TREG"; version="1.0.1"; sha256="1d0ynkj1iiirigrzbnfclzcvvz1yx8c0ykqhz5vg8bhaw1h0ry3j"; depends=[Matrix purrr rafalib SummarizedExperiment]; }; - TRESS = derive2 { name="TRESS"; version="1.2.0"; sha256="17g37g8kbis42iv980002py225cxy0gvjfnjda760am387gb9hqm"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; - TRONCO = derive2 { name="TRONCO"; version="2.28.0"; sha256="1ynf41bpc0v51sv6mig84n778kpfq0l9g50xff1bwz7zl1iab4al"; depends=[bnlearn circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; - TSCAN = derive2 { name="TSCAN"; version="1.34.0"; sha256="0a8f38jbb2lhqavqgbvm0d9xfy1cgjq4l7vs5h6kr45ij09wr6pm"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - TTMap = derive2 { name="TTMap"; version="1.18.0"; sha256="01kj5snbf435d073xdh0pya2rmd1h3cxsagn0mqq5vvf46246258"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; - TVTB = derive2 { name="TVTB"; version="1.22.0"; sha256="006xyify2vy8jblzwi1hayn4yvvqpyz9is2z1z0lrcy7krhdmx8s"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; - TarSeqQC = derive2 { name="TarSeqQC"; version="1.25.1"; sha256="0g6zpbyn7ysvlply9sqbw3pw504nk5g342vv5n59czrr9nyymics"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; - TargetDecoy = derive2 { name="TargetDecoy"; version="1.2.0"; sha256="15z2nzaikgbp0y56v0cifbk2w1c1akgqb5d5zgbcbpih0kawhfjd"; depends=[ggplot2 ggpubr mzID mzR]; }; - TargetScore = derive2 { name="TargetScore"; version="1.34.0"; sha256="1yrcjdv5g3nx8m95wf1nilrmi1sppii4i4da19sm5ys4idl60213"; depends=[Matrix pracma]; }; - TargetSearch = derive2 { name="TargetSearch"; version="1.52.0"; sha256="0pgj9h5sfwgx1rrlxd9zrvmbj0z26jxmhdx6f2khbgk7i2c1hxpd"; depends=[assertthat ncdf4]; }; - TileDBArray = derive2 { name="TileDBArray"; version="1.6.0"; sha256="0n600170qabrswjch922skfsbwr7hnyxzmg015bxm5kfmwhab9pd"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; - TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.13.0"; sha256="0bdpxxr739qdg92qabfx122k9f43vw2hyxp4yxqlbp37vzgcdf2c"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; }; - TimiRGeN = derive2 { name="TimiRGeN"; version="1.6.0"; sha256="1x8s0k938vfdadf6b33ha7ffvd2sn16scxii0wlzzm9s4v65vsvy"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; - TissueEnrich = derive2 { name="TissueEnrich"; version="1.16.0"; sha256="1l8qza4dmacp2rgx0z9nmya6jhidymx14wnz0vza0bm9409kaw41"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; - TitanCNA = derive2 { name="TitanCNA"; version="1.34.0"; sha256="14mxskynm6rjh8c7nzkp06c7a3a5rlcj88s9c6brzgx7gm3k7j3x"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; - TnT = derive2 { name="TnT"; version="1.18.0"; sha256="01c4lhy9k2wiy7m7685qy4bj5q9bys7xqxfy9x3kpcn7by3dix83"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; - ToxicoGx = derive2 { name="ToxicoGx"; version="2.0.0"; sha256="0d331md9cq2h44zq8wvj2167994i097drfgljhwj1nnfsx9agqn1"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; - TraRe = derive2 { name="TraRe"; version="1.4.0"; sha256="1vrafzf8qk6nnav1m4ym26n8f0nfbsxqnmymv9a7k8yfxry3jnn8"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment]; }; - TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.4.0"; sha256="13dxsk2dq5bsf9bwq4618kr6wsbmvzqnqh8i8zqrx4i818wd571s"; depends=[ggplot2 pracma rgl]; }; - TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.4.0"; sha256="07hcr3zplxlzlwc13wh9006m5kaqm57cm1b2x74bpp857f2q93dj"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; - TransView = derive2 { name="TransView"; version="1.40.0"; sha256="1k3fs0wxh2m2mp7i6hqnpgf60jikgjn7cdv2mmnz77ignp37xr4f"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; - Travel = derive2 { name="Travel"; version="1.4.0"; sha256="1k3wv2a38cfmyxci8pi8i6vqj0q3prqdh1hid2sa40slapk6h30z"; depends=[Rcpp]; }; - TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.8.0"; sha256="0wxgwcf2g2siz3kv19an1qv45xap8cdi4gblc9kssg0pjbxyhqnh"; depends=[ape igraph RedeR]; }; - TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.4.0"; sha256="0bqqnx89bcknlrpxm5n3wbmfw99gfrpaxi5n6fv4pmqyrd0rwcx7"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; - Trendy = derive2 { name="Trendy"; version="1.18.0"; sha256="06rjim93kqrf7l2m16vgi567fi9cdblgbf9khnmmbg73kaa346zz"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; - TurboNorm = derive2 { name="TurboNorm"; version="1.44.0"; sha256="00rggbdsk7xprkry8bi17mf143kqgw63cb315d9dc1qrc9vyz568"; depends=[affy convert lattice limma marray]; }; - TypeInfo = derive2 { name="TypeInfo"; version="1.62.0"; sha256="17cj4yd6lpckidzh5f3jb3vbwyimlnmsb3v5as4f91h2vnymwpax"; depends=[]; }; - UCell = derive2 { name="UCell"; version="2.0.1"; sha256="08wh5fch4sb1ijjz8rr8jkz3vvskb7k7948fd2b7bb104qmyhv41"; depends=[BiocParallel data_table Matrix SingleCellExperiment SummarizedExperiment]; }; - UMI4Cats = derive2 { name="UMI4Cats"; version="1.6.0"; sha256="0216qwriwjm0m7rzq8qjrvhnmn0fyqsv13cx24is53wqkqbqnavm"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; - UNDO = derive2 { name="UNDO"; version="1.38.0"; sha256="0fasad2y0cnrdlfarqxlmgn30hjfqksddnvq5yia3ps50wzj7xyr"; depends=[Biobase BiocGenerics boot MASS nnls]; }; - Ularcirc = derive2 { name="Ularcirc"; version="1.14.0"; sha256="0pqinw35vd94gk78i45rdyl4gyp6q8dmzc5kz72mcfg702wh7g8h"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr plotgardener R_utils S4Vectors shiny shinydashboard shinyFiles shinyjs yaml]; }; - UniProt_ws = derive2 { name="UniProt.ws"; version="2.36.5"; sha256="1q5wdfww4pdsqyxjvv2dw88b3kwddvj94p17yxbnnrs4ra6jcfdn"; depends=[AnnotationDbi BiocFileCache BiocGenerics cellxgenedp httpcache httr jsonlite progress RSQLite]; }; - Uniquorn = derive2 { name="Uniquorn"; version="2.16.0"; sha256="0hf2gs0aw0jw9qw1bqhsvxvw5grppbi3wxbfiynkbvza11aglifw"; depends=[doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; - VAExprs = derive2 { name="VAExprs"; version="1.2.1"; sha256="19jhjayyaga1lyswhbibgva32mdmfvkdidcvxgl22728c6ppkg61"; depends=[CatEncoders DeepPINCS DiagrammeR keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; - VCFArray = derive2 { name="VCFArray"; version="1.12.0"; sha256="17zgwv8nc192jyzlym09zyqppbg6zlid60xzh921mvp41sprf2j9"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - VERSO = derive2 { name="VERSO"; version="1.6.0"; sha256="13s91s03l15sha9sqcwazhhzph7s7ivbijlq1cz6c04x54bsdncn"; depends=[ape Rfast]; }; - VaSP = derive2 { name="VaSP"; version="1.8.0"; sha256="10fvdlxj4flv4zssaprhzg76l0jlin015pha7dmvfmjda4xm2zrl"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; }; - VanillaICE = derive2 { name="VanillaICE"; version="1.58.0"; sha256="1m3fi8snnf5rklhnwj2wndk86ry27anpa9pkk43v35qx5cvm1q9p"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; - VarCon = derive2 { name="VarCon"; version="1.4.0"; sha256="0l0vgs2hmykkxp2s14pzwjzg3xbhcj5md3hfz85n0cn4j8qgf4hz"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.42.1"; sha256="12d5hkx6pby6l2asyg4jp4jb2x17ybwhqd55rl64h37mwcndbdg1"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; - VariantExperiment = derive2 { name="VariantExperiment"; version="1.10.0"; sha256="17xrlmr25iilrnmsicf42qc7alh8qfqg6v7sd5mpw4lzwxim1mqv"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SeqVarTools SNPRelate SummarizedExperiment]; }; - VariantFiltering = derive2 { name="VariantFiltering"; version="1.32.0"; sha256="1bjqn8qik221x0bqvgd99p87v45iihwp6cxckh4ks964pd0c1xk8"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; - VariantTools = derive2 { name="VariantTools"; version="1.38.0"; sha256="18nxcamfgnw4n2ab0czxglw0sqc9wzdqzpjv43lcyyal23lzzsix"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - VegaMC = derive2 { name="VegaMC"; version="3.34.0"; sha256="172sa4zy4azyq50gxz9p4w23ac2xczwbq3nyp95q9zw9q6k7zcsk"; depends=[Biobase biomaRt]; }; - VennDetail = derive2 { name="VennDetail"; version="1.12.0"; sha256="0z98xhc636c291n76x9zxfcplgd3gc83fdvfbm8hjsmbp0fwca83"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; - ViSEAGO = derive2 { name="ViSEAGO"; version="1.10.0"; sha256="0s5x81cd7az9bx74rpfqy1lcf4p494mcj5bgvb0ky7fgnfcn6b6d"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; - VplotR = derive2 { name="VplotR"; version="1.6.0"; sha256="0k2gg4kjkhlha95yxknp16sj6idz7jsqimna7grcfabclqilypms"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; - Wrench = derive2 { name="Wrench"; version="1.14.0"; sha256="1zx65s4m71wj85s2sq8ip54pq12r4sxfv8b2rxc41gfc5aj0zzca"; depends=[limma locfit matrixStats]; }; - XDE = derive2 { name="XDE"; version="2.42.0"; sha256="02nvrkj2pjc8jv57zilmx39bn9vxpj95f68gvf3sp6g3gffblv0d"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; - XINA = derive2 { name="XINA"; version="1.14.0"; sha256="03gf7mqpnwx12kny9fsaskgrw83b0wi2cf1j4dbq46pfxjx34v1g"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; - XNAString = derive2 { name="XNAString"; version="1.4.0"; sha256="07y0n21i83izlnavwbxlhmrsa074k73d9p2cl19bj704sylw0g1j"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; - XVector = derive2 { name="XVector"; version="0.36.0"; sha256="1f3sbqy279gb9k13l73j00ixywa1havlqy81zx766r1xkz15nvhk"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; - Xeva = derive2 { name="Xeva"; version="1.12.0"; sha256="1ajgaf00bik6dfk3zj0m211g38lxqdg99r99rz1n21nms6a4qzia"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; - YAPSA = derive2 { name="YAPSA"; version="1.22.0"; sha256="1klqfif4sadkxw7agywk2ncvcdqsnfb1d6adnacdfdasr8abvhid"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; }; - a4 = derive2 { name="a4"; version="1.44.0"; sha256="1zs8fs6mdd7fhsmx4k824mid0jk400cm6dwfhl8z5lg85y8y2n0r"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; - a4Base = derive2 { name="a4Base"; version="1.44.0"; sha256="15zqirz16gpks9f5d3d76h85b936za2jih74vfr55l5arqrrvvsn"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; - a4Classif = derive2 { name="a4Classif"; version="1.44.0"; sha256="1v61vgpqrf7bhk44n2gkxb8dm5d0rr8c9rd6fdcjs50nhij0lbiw"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; - a4Core = derive2 { name="a4Core"; version="1.44.0"; sha256="1ky1lphq6bqxj6h12pg06cvs451fziqam8gd56wmpk6r5pbg4390"; depends=[Biobase glmnet]; }; - a4Preproc = derive2 { name="a4Preproc"; version="1.44.0"; sha256="098yzy7x5536bj76iavismdsdn7x6x07aw0j3knj6i9www9y8yz9"; depends=[Biobase BiocGenerics]; }; - a4Reporting = derive2 { name="a4Reporting"; version="1.44.0"; sha256="03sypayh187gqc6hykkqr1g0vb3zxc2c3xyp00jfbn12b35acnb0"; depends=[xtable]; }; - aCGH = derive2 { name="aCGH"; version="1.74.0"; sha256="00ni0kwy68v33ggfi8g5vffirhmbhaxg4l54hcqhx75m535z1x7d"; depends=[Biobase cluster multtest survival]; }; - abseqR = derive2 { name="abseqR"; version="1.14.0"; sha256="0jh3rj6ag07vpw6fymqm6m4jkrm9mgf50zkjncahxdf52mna8a9b"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; - acde = derive2 { name="acde"; version="1.26.0"; sha256="0lgq546y4qklfzbc6fjr3d656hn76p6dn4694qfiafql2nlsjbj2"; depends=[boot]; }; - adSplit = derive2 { name="adSplit"; version="1.66.0"; sha256="1wl2gd0b7krf485clw67cxayp0g9argklkzn8nw1vrkil0vvr4jm"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; - adductomicsR = derive2 { name="adductomicsR"; version="1.12.0"; sha256="0623qf06xgdsyz0in2wnxwvpdw8kj6cnwf8vlqmgp7g0n3w701ys"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; - affxparser = derive2 { name="affxparser"; version="1.68.1"; sha256="16x92gwsy7zdyz4md4cw847xn2ymqd6gqsn0rlr2nnf3qmnjnils"; depends=[]; }; - affy = derive2 { name="affy"; version="1.74.0"; sha256="02l77y4d4m4jwgkb3jdaskv6shmba5292whp0i29mg9asxv4rdc7"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; - affyContam = derive2 { name="affyContam"; version="1.54.0"; sha256="1pyd4rj6pp139kvhh97whi4afvx029w5lglr4mnscw7m3f618v0p"; depends=[affy affydata Biobase]; }; - affyILM = derive2 { name="affyILM"; version="1.48.0"; sha256="1rk68bhz2pyca4saiwd0kcw7sh2gs6d4c482jj4kx9r216mpb4q6"; depends=[affxparser affy Biobase gcrma]; }; - affyPLM = derive2 { name="affyPLM"; version="1.72.0"; sha256="1m3n5mvpg9g46rrglhdh94pppf71xp344yrcnw1i60vwv41vhbck"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; - affycomp = derive2 { name="affycomp"; version="1.72.0"; sha256="0aq5p56sqpvba0yhgd75302s9bazchh1izgymng6cpb78y5wfpj0"; depends=[Biobase]; }; - affycoretools = derive2 { name="affycoretools"; version="1.68.1"; sha256="05x64hy5jpmg973biwq4q9gzy1n0iqc0pxrix1f6bri1w6vil3ww"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; - affyio = derive2 { name="affyio"; version="1.66.0"; sha256="19cw82qvzkz6vh2gm302y7digsf6xif7c9l2q9s6lkx2yflqpgfp"; depends=[zlibbioc]; }; - affylmGUI = derive2 { name="affylmGUI"; version="1.70.0"; sha256="0ic8cmssjpjkblrblfdpqqcaxn1izxk1hmcfdk1sphm7wfiw8l2n"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; - aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.6.0"; sha256="0ngg12bgr95m4wm12scmrb55dgy4909c6qrg169l6dkng99v4nx1"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; - agilp = derive2 { name="agilp"; version="3.28.0"; sha256="1pm329y2nfcnx98ggxq0prdd5pxfcl5iylvsjjnhw5lyz1awg1yf"; depends=[]; }; - airpart = derive2 { name="airpart"; version="1.4.0"; sha256="0ljankgvgf8rby4z340wxx8v7acs9yz955p3a40jl6y8rz1svc06"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; - alevinQC = derive2 { name="alevinQC"; version="1.12.1"; sha256="0g75qnz7ah0widdjn99lhvnacz38vgl9j86n65wyswsf413hz3bb"; depends=[cowplot dplyr DT GGally ggplot2 Rcpp rjson rlang rmarkdown shiny shinydashboard tximport]; }; - alpine = derive2 { name="alpine"; version="1.22.0"; sha256="1nl1hxwakh5m9rqm3ksn2jzknsj9xnwl51bmc30knknm4q35wdv9"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; - altcdfenvs = derive2 { name="altcdfenvs"; version="2.58.0"; sha256="0caw9h0gw3qfrg4iqrydjdbagm059if513qjp1869cb0cq1w45r6"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; - amplican = derive2 { name="amplican"; version="1.18.0"; sha256="0q1c0g93xl0s2i6b1g21s11dngh7fbz63sn48yfiasvpxxlbag5q"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; - animalcules = derive2 { name="animalcules"; version="1.12.0"; sha256="144949zlamwh0ykkw2n0qr019cn5pml95s3g59k5xkb85q6wykqc"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; - annaffy = derive2 { name="annaffy"; version="1.68.0"; sha256="1fbqknwbl4534h66xrhcryg9pavm9fkja47gqbsxf8bd5yhk5mgq"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; - annmap = derive2 { name="annmap"; version="1.38.0"; sha256="0ywqbb8jia7rrkzcsf6a11kqf8dnx96z8n8xw7067mahycykbixv"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; - annotate = derive2 { name="annotate"; version="1.74.0"; sha256="0x6vddpiw2g713vicf70198x8dlrwf36p8jjygdsfnl56ls5bh2g"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; - annotationTools = derive2 { name="annotationTools"; version="1.70.0"; sha256="122b424zida3j0vqkn8d06sg3jpc3ngsgidr8kgg00n4cjngkc51"; depends=[Biobase]; }; - annotatr = derive2 { name="annotatr"; version="1.22.0"; sha256="1fbax9v3d486c8lwf3yfjbf4w7zf53wmdpxk2clwm8ngm7w0pqm0"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; - anota = derive2 { name="anota"; version="1.44.0"; sha256="1x75r5znl8jllqsgzpxsqj62ch11bpwhmyzmbjmb8sz8f8ww923c"; depends=[multtest qvalue]; }; - anota2seq = derive2 { name="anota2seq"; version="1.18.0"; sha256="0mjgw1ncdl2pqqbkgsj8ws9nkj6zfh1dlygmh535jck6gg2rh454"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; - antiProfiles = derive2 { name="antiProfiles"; version="1.36.0"; sha256="1277kg5xpyb2yriyjy18p437q5lj22h4al7z7pygkzxzywxv9g40"; depends=[locfit matrixStats]; }; - apComplex = derive2 { name="apComplex"; version="2.62.0"; sha256="1h5xn9wm75rphikyjdnamyvlvqvy3hlgf4qgx540va9w7v9gfhqc"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; - apeglm = derive2 { name="apeglm"; version="1.18.0"; sha256="1ppwk4g66x46hpqsfsvhl12398d1srqr47nmp0y2gz212kff0rby"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; - appreci8R = derive2 { name="appreci8R"; version="1.14.0"; sha256="0r7x9dhy1bivcpqrcq43w2awg7y2ql92rarbvylxbzch8x07f70h"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; - aroma_light = derive2 { name="aroma.light"; version="3.26.0"; sha256="1240v9wvsf205g998ms19hncki8g6shidg09dy5np9pqpiix4vys"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; - arrayMvout = derive2 { name="arrayMvout"; version="1.54.0"; sha256="1wh4hhd9qq14137yp0zi39wh9m458vfcfff7dsfdzpra565sdrjn"; depends=[affy affyContam Biobase lumi mdqc parody]; }; - arrayQuality = derive2 { name="arrayQuality"; version="1.74.0"; sha256="0bqxnny60sx474kk5cxd0id6gm1slypp8sqah1m80wd0vpwmp575"; depends=[gridBase hexbin limma marray RColorBrewer]; }; - arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.52.0"; sha256="0dqfl9agfr11mn38ibrf4jrfbhy4vcvn7ajd2mp7w2nmrfr0720i"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; - artMS = derive2 { name="artMS"; version="1.14.0"; sha256="0mdcvlpnjkkgp08kh3smx49pw1bav5zsynp4vak6m937ngccnzsr"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; - atSNP = derive2 { name="atSNP"; version="1.12.0"; sha256="0dmv34xqwr3l2rznapxmyrkyf1w78qzxdv88s5nn8s1m8qdkgwkz"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; - atena = derive2 { name="atena"; version="1.2.2"; sha256="0b89wb7cc44c8jd6868dn8pwgid768bprkncsi87qkdz0abbhzhp"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix Rsamtools S4Vectors scales sparseMatrixStats SQUAREM SummarizedExperiment]; }; - attract = derive2 { name="attract"; version="1.48.0"; sha256="0f1fsv278kpnxvqg9qa5rw2k3zr8zws0ab73ldl60h6pv9cy8x82"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; - autonomics = derive2 { name="autonomics"; version="1.4.0"; sha256="00k04pp81s6s3dyzykh0cqn27gxyk2brkl0k8g40b8rh13s1w8qy"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; - awst = derive2 { name="awst"; version="1.4.0"; sha256="0iw3zycmj95rmdx7f2w0j4yxkzd90y87lrzgdn9cyvvzi5avflav"; depends=[SummarizedExperiment]; }; - bacon = derive2 { name="bacon"; version="1.24.0"; sha256="1zvcxdj3r892898ik5gq3jdbfig1438qws4bwd465ik8vi7g39v8"; depends=[BiocParallel ellipse ggplot2]; }; - ballgown = derive2 { name="ballgown"; version="2.28.0"; sha256="0l8q3fymskxmsi5jcikzjz5xi66lpzgv7bjymir4izah2v68z708"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bambu = derive2 { name="bambu"; version="2.2.0"; sha256="0dc2hpnykr575jbrq9whmdabknl70s2hcs6gkmkl4kpv7xfqdq6w"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; - bamsignals = derive2 { name="bamsignals"; version="1.28.0"; sha256="0ywbxq829hclhr5bb6p77rspxvfs580zlwd2f5kr3an6rdgyx9ky"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; - bandle = derive2 { name="bandle"; version="1.0.0"; sha256="1f18k23hdjasbds37dsmd31ns4p1jm6bqfllw5za64z0mzd3dd29"; depends=[BH Biobase BiocParallel BiocStyle circlize dplyr ggalluvial ggplot2 ggrepel knitr lbfgs MSnbase plyr pRoloc pRolocdata Rcpp RcppArmadillo rlang robustbase S4Vectors tidyr]; }; - banocc = derive2 { name="banocc"; version="1.20.0"; sha256="10vaggq1w5jkxd8r2k1mhymzvb7x3h8afwn2pvmcpj022ka7xhbx"; depends=[coda mvtnorm rstan stringr]; }; - barcodetrackR = derive2 { name="barcodetrackR"; version="1.4.0"; sha256="0yxa15xkgqazw31vq4wm8v747bw4qb18m6i602pvynk0n5bgg3d3"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; - basecallQC = derive2 { name="basecallQC"; version="1.20.0"; sha256="07mcg0bs13apabhsip997nj6riqdrv9247azg379z6anaa0b0vpd"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; - basilisk = derive2 { name="basilisk"; version="1.8.1"; sha256="134xix2iq5l7783dng2jjklxd3m5lh4snb7bjhslrs2r1j3p8jpk"; depends=[basilisk_utils dir_expiry reticulate]; }; - basilisk_utils = derive2 { name="basilisk.utils"; version="1.8.0"; sha256="1jnqv0rlljkq27rd4ixl763v335f2aanm4fzr386yc81fj4vnmhk"; depends=[dir_expiry]; }; - batchelor = derive2 { name="batchelor"; version="1.12.3"; sha256="00ix3hvhgalxg63qnynv2waa273jk336lg47k72qwxfzimsxfjxc"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; - bayNorm = derive2 { name="bayNorm"; version="1.14.0"; sha256="12896sryq5bfbqglpk3dg9cdsq6rk3jhzdqcpyasvk6w7v1w8bin"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; - baySeq = derive2 { name="baySeq"; version="2.30.0"; sha256="1yqykndyv32s2rk7x86qf410qr0pigc8z4gdkl8vhj4dgyr47n2j"; depends=[abind edgeR GenomicRanges]; }; - bcSeq = derive2 { name="bcSeq"; version="1.18.0"; sha256="0bn3maqxayprrd73gwvxgqkk0zqc0nanw29wsnmvw7z1bd15zqy0"; depends=[Biostrings Matrix Rcpp]; }; - beachmat = derive2 { name="beachmat"; version="2.12.0"; sha256="0fc6vvjjq1mfjfj2zqkap3rwvinnfqjs0cpk1447sspvd1rjya8c"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; }; - beadarray = derive2 { name="beadarray"; version="2.46.0"; sha256="09n38fmckc0zbsv150x8k7l0xqbbjjkxnyqx84lfxqjxs592dvjy"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; - beadarraySNP = derive2 { name="beadarraySNP"; version="1.62.0"; sha256="0f07mjxm3d5636rd668i5710r57zkhn1j642ivghs61bjgmb3a01"; depends=[Biobase quantsmooth]; }; - beer = derive2 { name="beer"; version="1.0.0"; sha256="15s7ygx63by28hjks3b5w5ig72zvlzb8lxp1mv9vzzxjhp8jq33p"; depends=[BiocParallel cli edgeR PhIPData progressr rjags SummarizedExperiment]; }; - benchdamic = derive2 { name="benchdamic"; version="1.2.5"; sha256="16mrc5mybi8sz0v7xh5z4i5vd7p9wg8cry83gj62ka3vznd7y9qk"; depends=[ALDEx2 ANCOMBC BiocParallel cowplot dearseq DESeq2 edgeR ggdendro ggplot2 ggridges limma MAST metagenomeSeq MGLM NOISeq phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment tidytext TreeSummarizedExperiment zinbwave]; }; - bgx = derive2 { name="bgx"; version="1.62.0"; sha256="0q2y4n6bcc9pvz5sgfkw1lrb00rrp7q29i1vh7srdfmfhgpyz6bk"; depends=[affy Biobase gcrma Rcpp]; }; - bigPint = derive2 { name="bigPint"; version="1.12.0"; sha256="1hp69j2qcidrxqs3dxjjngb09nbzp5x2yy4jz1rjmv6ghif9ccfj"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; - bigmelon = derive2 { name="bigmelon"; version="1.22.0"; sha256="1msch4qbifkdqv0bbw03xj6d9w28z91mf4ki41rqg6048cq17h2k"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; - bioCancer = derive2 { name="bioCancer"; version="1.24.01"; sha256="0dyxwms1s19bmj5691fqk51ig2b0s5yf62j12gpd0xv1arcc2zy1"; depends=[AlgDesign AnnotationDbi Biobase clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets httr org_Bt_eg_db org_Hs_eg_db plyr r_import R_methodsS3 R_oo radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; - bioDist = derive2 { name="bioDist"; version="1.68.0"; sha256="04nrvrcvpj0sn8p2i8n3ggsl2s7r4na576174i7bn1sj21vr0yb0"; depends=[Biobase KernSmooth]; }; - bioassayR = derive2 { name="bioassayR"; version="1.34.0"; sha256="0zbrci0vgk4qca28i0qb2izhyrz3r95l1w54h9h3zj9f3vd61wrz"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; - biobroom = derive2 { name="biobroom"; version="1.28.0"; sha256="04x1z9nchm4mbhqr31011zdprc4md156j4zf003s7xx0n278xsgh"; depends=[Biobase broom dplyr tidyr]; }; - biobtreeR = derive2 { name="biobtreeR"; version="1.8.0"; sha256="0cx46hdqqm6mbj0vp4y86axv0qccd4sgk2jwwjvnqp5pynq9bbqa"; depends=[httpuv httr jsonlite stringi]; }; - biocGraph = derive2 { name="biocGraph"; version="1.58.0"; sha256="1y59a7c4ahhn1g2wz2hkx83izfn8i85mmxxp63jdd0rg7zwhr6nn"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; - biocViews = derive2 { name="biocViews"; version="1.64.1"; sha256="0ixcx9qqpmwmnhml3klk5z075km8g2l4q0iqc1dbniga87qgyl38"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; - biocthis = derive2 { name="biocthis"; version="1.6.0"; sha256="1hdgjp00d2si3mr7m1d289i9wn7g927z6n8n27d5sm94lb91qln0"; depends=[BiocManager fs glue rlang styler usethis]; }; - biodb = derive2 { name="biodb"; version="1.4.2"; sha256="0f3clqmrpaawhjjyb4x5mnbhsam56r0av05b5cl5p4waylp8qbs1"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; - biodbChebi = derive2 { name="biodbChebi"; version="1.2.0"; sha256="14sgjlklrvdz6wrsk8qbfmv98q8wcr229w1ra1kif7agvdqdw0ad"; depends=[biodb R6]; }; - biodbExpasy = derive2 { name="biodbExpasy"; version="1.0.0"; sha256="1a2g0i5jb6i3qvldiy1msdcpv3w65jpay2iavzmzsp228jp49v5f"; depends=[biodb chk R6 stringr]; }; - biodbHmdb = derive2 { name="biodbHmdb"; version="1.2.0"; sha256="16vmp1z1b0jsap7xd7wcr0fbpl75srrswmqhcq26biy23w1r93kj"; depends=[biodb R6 Rcpp testthat]; }; - biodbKegg = derive2 { name="biodbKegg"; version="1.2.1"; sha256="0227nnqfyylghn3gb5ps26ak18hvbjhplxrnwg2lcccd5mi67hwh"; depends=[biodb chk lifecycle R6]; }; - biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.2.0"; sha256="0zbw7jmkq3zaf2mp86yizsfm4nyamgi2fnlhn5bl0wvd01jrjlc0"; depends=[biodb lifecycle R6]; }; - biodbMirbase = derive2 { name="biodbMirbase"; version="1.0.0"; sha256="1ci7wf0wkqvrwqw04z57i0l9ldgzgmhwfwv69yrrz1a9yjfq82q6"; depends=[biodb chk R6 stringr]; }; - biodbNcbi = derive2 { name="biodbNcbi"; version="1.0.0"; sha256="1ymngw0wy2jr853v0r1gf3nb1q596f03gjhxxf0x2pkblpp85mqz"; depends=[biodb chk R6 XML]; }; - biodbNci = derive2 { name="biodbNci"; version="1.0.0"; sha256="19gv91mqscdzpxcia32hc03v62icjd79c8bkkmi2nmvaa4zsyjii"; depends=[biodb chk R6 Rcpp testthat]; }; - biodbUniprot = derive2 { name="biodbUniprot"; version="1.2.1"; sha256="1cxmjq5f92is9ckqm61fj6syb2yw9i1pxj54yr268l2l67kz89vn"; depends=[biodb R6]; }; - biomaRt = derive2 { name="biomaRt"; version="2.52.0"; sha256="0yn3kanyrplc89a900xiz33nw1v23mkljvd5isizgs8gzvwzf8xg"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; - biomformat = derive2 { name="biomformat"; version="1.24.0"; sha256="12wqjipxhngmlnrdmx329dqmkmy2wa4nkkrhwaqv2nwy90dncs9n"; depends=[jsonlite Matrix plyr rhdf5]; }; - biomvRCNS = derive2 { name="biomvRCNS"; version="1.36.0"; sha256="0i576g7pkivqaxff1pkb760mdpx8v9fh071aic1mwfnlfa7k87ln"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; - biosigner = derive2 { name="biosigner"; version="1.24.2"; sha256="0vdv2by3qv7y8vzr8qgg7apwwgsa0fhlfrhzns7g3nas7883c89m"; depends=[Biobase e1071 MultiAssayExperiment MultiDataSet randomForest ropls SummarizedExperiment]; }; - biotmle = derive2 { name="biotmle"; version="1.20.0"; sha256="1frig90krvfdk6nwpmslpj0pvligyzwzfwwci7hzwcmbglk5jj22"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; - biovizBase = derive2 { name="biovizBase"; version="1.44.0"; sha256="1ffzf7yvl47l8v8a50m8g9q33hgwvxg4fcm8ld2yy8hd2zl86zyd"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - biscuiteer = derive2 { name="biscuiteer"; version="1.10.0"; sha256="0y7vbdaafiga16yr0d22w1v4p0jmczndcar0r0km06f5y1b74amr"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute IRanges Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - blacksheepr = derive2 { name="blacksheepr"; version="1.10.0"; sha256="1b3ij0rzri4xxldinpk632m2px228xl1fy6vgj4f8mawymlfl6h7"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; - blima = derive2 { name="blima"; version="1.30.0"; sha256="1h3bnwlsi14l1f4kdmv6qqypfa09gml812k6fdni0i6m9g79yylv"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; - bluster = derive2 { name="bluster"; version="1.6.0"; sha256="1g496yc7mdhshf6r0n8xhj7ax936ia5z2cx72lqyk2vzzzl5c4v8"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; - bnbc = derive2 { name="bnbc"; version="1.18.0"; sha256="1d2m98vpjl2ibzx61rr9a95v7wa5zz2s2bnymwmm08445dv33sy2"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; - bnem = derive2 { name="bnem"; version="1.4.0"; sha256="1qh3kxy09q29s9sg17gg3yhvcq3p99mnvr6zm91izf8fgyivz912"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; - borealis = derive2 { name="borealis"; version="1.0.1"; sha256="0glldfg1h480fpm5wpsqq6mffnkwvfknpl2hdvxvwnarqv0qiz7s"; depends=[Biobase bsseq cowplot doParallel dplyr DSS foreach gamlss gamlss_dist GenomicRanges ggplot2 plyr purrr R_utils rlang snow]; }; - brainflowprobes = derive2 { name="brainflowprobes"; version="1.10.0"; sha256="0vyzw4i28bz15z06rz57h1ipcxs5lqlwcpf58a1wz0gzn5na11js"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; - branchpointer = derive2 { name="branchpointer"; version="1.22.0"; sha256="0rsfx60l6972nz4kpjly0h4sm48flfrwskgh1shl3hbq3bnli18b"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; - breakpointR = derive2 { name="breakpointR"; version="1.14.0"; sha256="0mx8lk8q69jq5wqwhp7qvqv1zvm3hj6z53z3sil0470ri7jdyh6l"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; - brendaDb = derive2 { name="brendaDb"; version="1.10.0"; sha256="0wg52zq664zdv8lh4s6662wrwwxf9blrpag7b89ywz8p8rsnnmvm"; depends=[BiocFileCache BiocParallel crayon curl dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr xml2]; }; - bridge = derive2 { name="bridge"; version="1.60.0"; sha256="0w8l5fzid3iz7pb8wdggx2xli2jgcgyxvgnij2jl5blkg1dfzhc5"; depends=[rama]; }; - bsseq = derive2 { name="bsseq"; version="1.32.0"; sha256="1jpfib2vb6hd7pgh3d33jgch24lba175zmbalwsbgvlmmyyf1ki5"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; - bugsigdbr = derive2 { name="bugsigdbr"; version="1.2.2"; sha256="0jrvxlpc18gr5ba5r4pqrwzy9q6v03q26v150b2cb5b5nz4k8mbk"; depends=[BiocFileCache vroom]; }; - bumphunter = derive2 { name="bumphunter"; version="1.38.0"; sha256="0k92ps9chqsimbc7vsr8swg679zfv8nfn5zahbqq4nknhhy7hwxw"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; - cBioPortalData = derive2 { name="cBioPortalData"; version="2.8.2"; sha256="09bjlyr4l7iifgk39kkn3bq9lddvsgg2qj362xxy6z8igzblm05x"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; - cTRAP = derive2 { name="cTRAP"; version="1.14.1"; sha256="1dsn2g0qnvv2qvkd9c1la20585z7pvhzzbr30y45sh271s27pa12"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; - caOmicsV = derive2 { name="caOmicsV"; version="1.25.0"; sha256="10i4imjihmssdwfys21fsqng8zfp7sxzkc58m8qmnh6s5sccb3sz"; depends=[bc3net igraph]; }; - cageminer = derive2 { name="cageminer"; version="1.2.5"; sha256="1aq9q9cl75zscddmr3ijzyr9cn9cjdirvi0rl4jlnrpqkyh60x1i"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2]; }; - calm = derive2 { name="calm"; version="1.10.0"; sha256="0fmi5s7g9xcbznd4g4hngp1rgy4anwdqxi1isp40anyhgmn3i3kj"; depends=[mgcv]; }; - canceR = derive2 { name="canceR"; version="1.30.01"; sha256="1fv3dl7r67xhzzdrcwqyhr3g5pz8im0ll2rnyixskp1w55b98kjg"; depends=[Biobase circlize Formula geNetClassifier GSEABase httr phenoTest plyr R_methodsS3 R_oo rpart RUnit survival tkrplot]; }; - cancerclass = derive2 { name="cancerclass"; version="1.40.0"; sha256="1s80w8ksf735ps677c7dcwkkpq1ynjqmp2r4biqav4j1y50nbi57"; depends=[binom Biobase]; }; - casper = derive2 { name="casper"; version="2.30.0"; sha256="0rx23ppj78m7dinvrim3hdh330xdlv2yw5405akd32dxr5dhp0wh"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; - categoryCompare = derive2 { name="categoryCompare"; version="1.40.0"; sha256="1bidg957kjfg16w07gdbb8ygzipg2c47by9wilj4ijm32czv2ls7"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; - cbaf = derive2 { name="cbaf"; version="1.18.4"; sha256="1iqjqigb24qkj4wyci2q9f5nrgz1fnm0fl9xfjpjw1sx2csqgirz"; depends=[BiocFileCache cBioPortalData genefilter gplots openxlsx RColorBrewer]; }; - cbpManager = derive2 { name="cbpManager"; version="1.4.0"; sha256="0h60a4cx3cgzbs9mchdasy7vgh6rm8vqp5w770328jwq9wyj3xkr"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; - ccfindR = derive2 { name="ccfindR"; version="1.16.0"; sha256="1gg5508qxhv0g4k3m1iy3bzs53wlqbvnx3lsm77zmxhng38zzniv"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; - ccmap = derive2 { name="ccmap"; version="1.22.0"; sha256="03rw2k0ln1lr4c0sz06x1b8wyriq659bvngbb9wyr4mkcbjz5jy7"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; - ccrepe = derive2 { name="ccrepe"; version="1.32.0"; sha256="04dmka519ppp6c68wdw98qfi897jad5wr9az0j09kyzk92mkcl10"; depends=[infotheo]; }; - ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.8.0"; sha256="1bl7nasll5p18b0g8q1d0wfx2min8897pkkw0hfp6ir6d85fkj4f"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; - celaref = derive2 { name="celaref"; version="1.14.0"; sha256="0pnnk7rq4yrl33ycxsxak3zz104350rzldi7hdnrp5aghr0jxjl6"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; - celda = derive2 { name="celda"; version="1.12.0"; sha256="1qqm4pags5bp08w70419qlaghfr3r3pmb870k8ax9snbiqx32sp3"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; - cellHTS2 = derive2 { name="cellHTS2"; version="2.60.0"; sha256="1mrf7mdhcbvvcizc8nr8mr6xp6k9zv6v97p3zz173iqhlwf0mvvn"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; - cellTree = derive2 { name="cellTree"; version="1.26.0"; sha256="0zpf05w4bcnjfzb8jqq936rs5ji84gpn72bndsk6ipg8s4lh0bav"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; - cellbaseR = derive2 { name="cellbaseR"; version="1.20.1"; sha256="15y11jykxm3c681lr277zvzwsfbz0rxfzmdwanlmh0akafyl6nr6"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; - cellity = derive2 { name="cellity"; version="1.24.0"; sha256="0ywghrfj6m6hcz9yvpq0ww3p05rxdrfjna7il9faa76va5m8ssly"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; - cellmigRation = derive2 { name="cellmigRation"; version="1.4.0"; sha256="09c6rmraajiqx7hgxmjyx4h32gdjy849ymyid0zvxqq4cfrx0pbs"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; - cellscape = derive2 { name="cellscape"; version="1.20.0"; sha256="1k0z7sw4d3wxy4sz42b6aplq2njm673sfqgzzyf6m8iax2rvgvhs"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; - cellxgenedp = derive2 { name="cellxgenedp"; version="1.0.1"; sha256="1p2ajvsnrsz3kl1xkpvja5pxk3qycx0dvmnrwxwij3z15kgbcm2b"; depends=[cpp11 curl dplyr DT httr jsonlite shiny]; }; - censcyt = derive2 { name="censcyt"; version="1.4.0"; sha256="03cr3l893b6250339d60xpf5mqcjl38fa9cpihy5gl83iy3dz9x4"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; - cfDNAPro = derive2 { name="cfDNAPro"; version="1.2.0"; sha256="1bbmp324nl2ijbifhqyw074s2na391c359iyq03w73yd86w8fcc0"; depends=[dplyr ggplot2 magrittr quantmod rlang Rsamtools stringr]; }; - cghMCR = derive2 { name="cghMCR"; version="1.54.0"; sha256="0761pjajxgavxmrljzwksw0awdqrqxbi9cadqgixc0sj94rz82rd"; depends=[BiocGenerics CNTools DNAcopy limma]; }; - chimeraviz = derive2 { name="chimeraviz"; version="1.22.0"; sha256="06m60db90fnhm3r82n5zdbnwqlqnnc93cacaidizm5c29f7f3h40"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; - chipenrich = derive2 { name="chipenrich"; version="2.20.0"; sha256="0nfxhghkygn16j21031kdwh27vmwzlvsj6cn7a9bcd2vr34kq31g"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; - chipseq = derive2 { name="chipseq"; version="1.46.0"; sha256="1vh0hvgnw7ykj401v1q807sl14s4nixp1d8xbm41n01q6w8x834i"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; - chopsticks = derive2 { name="chopsticks"; version="1.62.0"; sha256="0zhf3s8pbgvk1g2qkp1hs1yhsg87hpf71pf9v9sczcggnwcrgj8r"; depends=[survival]; }; - chromDraw = derive2 { name="chromDraw"; version="2.26.0"; sha256="0x6znw33r7791cs7504kih12r9alcvsvk2z8in98nhndzlfr99qh"; depends=[GenomicRanges Rcpp]; }; - chromPlot = derive2 { name="chromPlot"; version="1.24.0"; sha256="02k7l22hjvmkvnva28plbrxv87v7krbjivs2bxrl5jw6ksc5m4mj"; depends=[biomaRt GenomicRanges]; }; - chromVAR = derive2 { name="chromVAR"; version="1.18.0"; sha256="0vhsvkm4kvln0002f13ayk57f9fmiz1kw9vwpsm1vds1vahd656m"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; - chromstaR = derive2 { name="chromstaR"; version="1.22.0"; sha256="1xjwmnr4hk8v3nwvhqd6ixk5qr2dv0n4mb9wd6nl7cgjfhjsdgj7"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; - chromswitch = derive2 { name="chromswitch"; version="1.18.0"; sha256="1sdgmigr89kbbm2rcbjkjv9z8ig332a1lnk3mqpa15bkpapw7abm"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; - cicero = derive2 { name="cicero"; version="1.14.0"; sha256="1ip12ijazlmcfbym078slxykpkz7d1zwvs8l8aqdnqpxjfk1ipx5"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; - circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.10.0"; sha256="1gwm416shhv2p3gh1n6kv1rvx0n0imy25b7z62z4s8b3gs3nfp5j"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; - cisPath = derive2 { name="cisPath"; version="1.36.0"; sha256="07h948mxn2zjylv2y5q5w6rwqqmmha21xgwqpckzhgjh310jj674"; depends=[]; }; - cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.34.0"; sha256="1n1j9cz2v5bd0dbmpbb7pggixjsvyx3dfqjkmmqxir3dddbp6d0c"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges S4Vectors seqinr stringr]; }; - cleaver = derive2 { name="cleaver"; version="1.34.1"; sha256="1ycrx0n2ignhmgb87is4qm6sv1z0m6a5c8sg3xn0cw9y4abjkgdf"; depends=[Biostrings IRanges S4Vectors]; }; - cliProfiler = derive2 { name="cliProfiler"; version="1.2.0"; sha256="08hvj9zk42hf4r0cdd5pqxm2mk15salhk031fqbbks048hnqs42v"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; - clippda = derive2 { name="clippda"; version="1.46.0"; sha256="1nhkf1nchxf26b05bdi4qz1asyrbxgi80irx80w1scijn33yv3d7"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; - clipper = derive2 { name="clipper"; version="1.36.1"; sha256="0c58kwrlfbrnzwgh3amjby1bbk519rx4l6767b2ivx6qrpxcng6p"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; - cliqueMS = derive2 { name="cliqueMS"; version="1.10.0"; sha256="1fp5222wi91wk1fnw29gaiv02asidhrxzaq3da9isgjjvvr1gx63"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; - clonotypeR = derive2 { name="clonotypeR"; version="1.34.0"; sha256="15nnj6c23bcnln1xsmxs7f13m13lvn6did7lvp7ij8gcb0vg2g6q"; depends=[]; }; - clst = derive2 { name="clst"; version="1.44.0"; sha256="0smr6kh6rk10zd2k8si79l3wdl2gdk6h3fh345a8m19rkv6sy455"; depends=[lattice ROC]; }; - clstutils = derive2 { name="clstutils"; version="1.44.0"; sha256="0w2gki24xf9m8qh1289hns8bkr7gj6big21lyb4p2mp652z1daw7"; depends=[ape clst lattice rjson RSQLite]; }; - clustComp = derive2 { name="clustComp"; version="1.24.0"; sha256="1svj1xvg8cn1hm5snw8yv764382vc41m7q2qjwv7cfyv7ri3ai42"; depends=[sm]; }; - clusterExperiment = derive2 { name="clusterExperiment"; version="2.16.0"; sha256="1xd2kxmdg51hhj0zvz7pxmpdvb1sya7prsf9ny2wj2y8ivrqgn4f"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; - clusterProfiler = derive2 { name="clusterProfiler"; version="4.4.4"; sha256="0k5jhry0j6wa7779n3hrw4ld4bvyahpgpbwi2a0g704m3dd3mqp5"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim magrittr plyr qvalue rlang tidyr yulab_utils]; }; - clusterSeq = derive2 { name="clusterSeq"; version="1.20.0"; sha256="0rh9ql3f1z79hxwlnsv5r8l0cpqyr6jxlz38f1aakshdlwdxlkiq"; depends=[baySeq BiocGenerics BiocParallel]; }; - clusterStab = derive2 { name="clusterStab"; version="1.68.0"; sha256="0p5dk9s3zrd5d2ap5i445jlkhjp7f8vh3dj3h59wya2n4phpigb4"; depends=[Biobase]; }; - clustifyr = derive2 { name="clustifyr"; version="1.8.0"; sha256="1c1lbgsmwafg9aa8j95x235270axp1g7mq41hmidc9mf4f6vclxc"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - cmapR = derive2 { name="cmapR"; version="1.8.0"; sha256="0hh9if8zhb4nfh2l76fjj364kcp0km78qlb0i67xlhj8py27bhij"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; - cn_farms = derive2 { name="cn.farms"; version="1.44.0"; sha256="1dy0hd55h8ly4j4n713wal655j6p1sfpnhswczhn3k2xkzykb974"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; - cn_mops = derive2 { name="cn.mops"; version="1.42.0"; sha256="152l9nnncyyz182cnafw8ipy94jf7mizhr6xmvp3l4qj9yixr0y5"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - cnvGSA = derive2 { name="cnvGSA"; version="1.40.0"; sha256="0wvkn62i4g3r5fg7am6mmwri01gr5g5dil5mp5w4na57h1svsksc"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; - coGPS = derive2 { name="coGPS"; version="1.40.0"; sha256="1211fvcf6li32575p8638a6hf4a6bqqkx4jyfb8hpymhj5d4z5lx"; depends=[]; }; - coMET = derive2 { name="coMET"; version="1.28.0"; sha256="03b7a1b0g3zrh34ifjrylqdd1yi033lda6q71mir6plqr9y7fva1"; depends=[biomaRt corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; - coMethDMR = derive2 { name="coMethDMR"; version="1.0.0"; sha256="0n89jv29mqrc2qjn7fv7zcn1ycsfrlsfs5ps1yiw5p77mq2rapp4"; depends=[AnnotationHub BiocParallel bumphunter ExperimentHub GenomicRanges IRanges lmerTest]; }; - coRdon = derive2 { name="coRdon"; version="1.14.0"; sha256="1kiw6kbbwqmr89mzppmgral0zxd5shmp53xyvbcr26fxs0xn1np2"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; - codelink = derive2 { name="codelink"; version="1.64.0"; sha256="0r1srzx7z2833yvbnmdmbpkhy7irs4hdy2901bzqcwp91b4n6q75"; depends=[annotate Biobase BiocGenerics limma]; }; - cogena = derive2 { name="cogena"; version="1.30.0"; sha256="0xibcmnbaxsgq06wmh45263gp2f8m9llk2v5m2n1qlvcykyr7vwr"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; - cogeqc = derive2 { name="cogeqc"; version="1.0.7"; sha256="1dxywmwn0wsfvhpsyvrrav33bf4d0lszrll1f83514ycc9xvzqby"; depends=[Biostrings ggplot2 ggtree igraph patchwork reshape2]; }; - cola = derive2 { name="cola"; version="2.2.0"; sha256="1940aqpqnb31kkypnhrrp7lbsv70bxcqkcrjgjmc1ag58148mnka"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; - comapr = derive2 { name="comapr"; version="1.0.0"; sha256="1m8jzgnkghwn7ci8jqr7zs4sj6lisnxri0wiw92m1vz9zibz3w5q"; depends=[BiocParallel circlize dplyr foreach GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz IRanges Matrix plotly plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment tidyr]; }; - combi = derive2 { name="combi"; version="1.8.0"; sha256="12rv2ic1y4ab4mj5jlrfgph9fbm44sqla8kqsjn2fwfw2zfzyfq4"; depends=[alabama BB Biobase cobs DBI ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; - compEpiTools = derive2 { name="compEpiTools"; version="1.30.0"; sha256="1b7aasmm56ckfhb8b6im0p6yvlbn6njmn2jyvc8n1x0bxrpy3nv3"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; - compartmap = derive2 { name="compartmap"; version="1.14.0"; sha256="0iq19ca8jmdviacrm5aw6bicgnrkc84s1ywva8mc7lgwnc2fjrnw"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; - compcodeR = derive2 { name="compcodeR"; version="1.32.1"; sha256="09jc7h0i5821piga3prqkhzk8zp29iac7r9z9m2rxlsv7lk2ynnk"; depends=[ape caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS matrixStats modeest phylolm ROCR sm stringr vioplot]; }; - conclus = derive2 { name="conclus"; version="1.3.3"; sha256="1lgr0k1wf6a0dn4zvb6hpknr3dh10r3v81l3zlwnyfii5bnpi4a6"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra org_Hs_eg_db org_Mm_eg_db pheatmap rlang Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; }; - condiments = derive2 { name="condiments"; version="1.4.0"; sha256="15b6zpj9ivj8i2rykd39ywmb8gyllgfkbmswrjb5jhkinqcj53lf"; depends=[BiocParallel distinct dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; - consensus = derive2 { name="consensus"; version="1.14.0"; sha256="0hw9z5mqgnb0zy9sx5w96zsnnzywmlg7pqvvbs6lk33wyi7q42k6"; depends=[gplots matrixStats RColorBrewer]; }; - consensusDE = derive2 { name="consensusDE"; version="1.14.0"; sha256="1vgkvqxybpnw0sifp3lxvg9fd0y93p5x5xx7acay0mlg1vnbs3hp"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; - consensusOV = derive2 { name="consensusOV"; version="1.18.0"; sha256="0m1jw434b6pn7ymx9829nrvy1viqpl50d4mhvkpkx37qnv45qdfa"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; - consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.24.0"; sha256="1nc1ylr7mkj6bgxhyccxrvp3ybndr185c7ah9d3msvzp17497r13"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; - contiBAIT = derive2 { name="contiBAIT"; version="1.24.0"; sha256="19spydvgkypf695lb8pvhslf8sv340ancz5hdhvmfdb1ghhb62lk"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; - conumee = derive2 { name="conumee"; version="1.30.0"; sha256="1pzg6vvzskxdfkwwshqa0vi498vi9341bkc5dinihm8qvjn2h268"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; - convert = derive2 { name="convert"; version="1.72.0"; sha256="0xj4k82q9547cls3dcs2wnlk6ssvcgawynsbmry9kqmjrl44ng20"; depends=[Biobase limma marray]; }; - copa = derive2 { name="copa"; version="1.64.0"; sha256="09g05jy46mq570dm0hs65j5axqswkyf0an68aqhl8g8kw0nq888j"; depends=[Biobase]; }; - copynumber = derive2 { name="copynumber"; version="1.36.0"; sha256="1gr8q9ri49x8qlmbsi6k6wcak1w9v48wr1qy7axc86brzx6z6mhd"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; - corral = derive2 { name="corral"; version="1.6.0"; sha256="028av863qqqgvkcsnl5180h7ryxx0xs5ya0zpj04a80vlcb0ikbz"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals reshape2 SingleCellExperiment SummarizedExperiment transport]; }; - coseq = derive2 { name="coseq"; version="1.20.0"; sha256="02w3s64d186qhivd2a6adxi8jwdxd5cs0mpbfrijiyxd37allhpx"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; - cosmiq = derive2 { name="cosmiq"; version="1.30.0"; sha256="1a0lqd4lgn2qx4p8d77dcn9gnymv42iv6jyz61rzawh6vkmj6f4m"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; - cosmosR = derive2 { name="cosmosR"; version="1.4.0"; sha256="1i2a5xajxzkk7m50vavygsnb4wadmf9qkfip90554l69ylvvafj7"; depends=[CARNIVAL dorothea dplyr GSEABase igraph progress purrr rlang stringr visNetwork]; }; - countsimQC = derive2 { name="countsimQC"; version="1.14.0"; sha256="0a5i0mb19ck65mqr4l695ngwj1qjapb3s7h52pn128qyywr02gla"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; }; - covEB = derive2 { name="covEB"; version="1.22.0"; sha256="0l04bsqcdb8m61mwrvq0d2gx2iz1kn2fbryxvhj5rsjrf72r6slk"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; - covRNA = derive2 { name="covRNA"; version="1.22.0"; sha256="031vxazqss5mi5clc15iw38xgc079vd17wf53fik1fynr84g5xpi"; depends=[ade4 Biobase genefilter]; }; - cpvSNP = derive2 { name="cpvSNP"; version="1.28.0"; sha256="0npggmics5lng86zsg132khak4hn15sb8w8qhxl19kdxiayf9dpa"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; - cqn = derive2 { name="cqn"; version="1.42.0"; sha256="1qipaskv2bqgc733sssalzygcbhdlnh6cxvk3w7nz3wlmjar2yqp"; depends=[mclust nor1mix preprocessCore quantreg]; }; - crisprBase = derive2 { name="crisprBase"; version="1.0.0"; sha256="0bcdnp56qyw2a4qmc5jkmq8cvn2n4kbmz0yavi8692myfdr35vlq"; depends=[BiocGenerics Biostrings GenomicRanges IRanges S4Vectors stringr]; }; - crisprBowtie = derive2 { name="crisprBowtie"; version="1.0.0"; sha256="1gdkpx81gg7m1s956n57r6bk5vi3f9qypl93762x1hr0pd03xy01"; depends=[BiocGenerics Biostrings BSgenome crisprBase GenomeInfoDb GenomicRanges IRanges Rbowtie readr stringr]; }; - crisprBwa = derive2 { name="crisprBwa"; version="1.0.0"; sha256="157nxk2ymjikw2madbyjxbihcdjav3gg5xmr6i5jp8jsm0m4hpjc"; depends=[BiocGenerics BSgenome crisprBase GenomeInfoDb Rbwa readr stringr]; }; - crisprScore = derive2 { name="crisprScore"; version="1.0.0"; sha256="19vwvjq7pw6m813saldns38y3rhg7a63f5cd5sly3qiai8qfa3bb"; depends=[basilisk BiocGenerics Biostrings crisprScoreData IRanges randomForest reticulate stringr XVector]; }; - crisprseekplus = derive2 { name="crisprseekplus"; version="1.22.0"; sha256="18xiwjbssyz7dphiafqza5awxb6b4g023r3lq51mggbqczhrqwfp"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; - crlmm = derive2 { name="crlmm"; version="1.54.0"; sha256="0znspkc8mvfq94687dzmzix1dnnz32nvv2pdhv9cay2q6sv3d6z5"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; - crossmeta = derive2 { name="crossmeta"; version="1.22.1"; sha256="1qqbs11b5srm063igwddgnkmk65fsi7zy3ncl80q0bikn9d9dbcs"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets stringr sva tibble XML]; }; - csaw = derive2 { name="csaw"; version="1.30.1"; sha256="12fyrg251g0c25vff3badi3mrw6lwhlxnq1xc9q5m1mq9p6151d3"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; - csdR = derive2 { name="csdR"; version="1.2.0"; sha256="02r3waqvv4v7pjbw2xv41y46ammlm5s04hg0pwpb327ia6pz9c1v"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; - ctc = derive2 { name="ctc"; version="1.70.0"; sha256="0c9pgp25dqx12fmi4cqm7xyxjmy6g7wv9vbljgdjghaij2lrc4pb"; depends=[amap]; }; - ctgGEM = derive2 { name="ctgGEM"; version="1.7.0"; sha256="0hmapz96r024r3bws1wf0spd0i81viyma859y9nn93jrwxscrcdb"; depends=[Biobase BiocGenerics igraph Matrix monocle sincell SummarizedExperiment TSCAN]; }; - ctsGE = derive2 { name="ctsGE"; version="1.22.0"; sha256="0scqb397cx61sn9xsclg80wwjh3fvlc8a7l3fakmdmy3jc667ny8"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; - cummeRbund = derive2 { name="cummeRbund"; version="2.38.0"; sha256="1p4anmi436zykp0ir307g75g23kj8b7shxg4r65qq6zdwflphm0q"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; - customCMPdb = derive2 { name="customCMPdb"; version="1.6.0"; sha256="1h5zpxlvnywafbssf8pk143xw5b8n7ixl1dq76msvvhgharqhl87"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; - customProDB = derive2 { name="customProDB"; version="1.36.0"; sha256="0bypa4xww5hsby7hs7l4p1lz790d8sk0qvjvciq0ai4f7nb4gwjr"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; - cyanoFilter = derive2 { name="cyanoFilter"; version="1.4.0"; sha256="0r30q9lxc3nwz90sv6ra7y2fdj04k0q1dz2hhw979v1yjndjqr6q"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; - cycle = derive2 { name="cycle"; version="1.50.0"; sha256="0kwn6wbxc5zd0cp9wpb7x9yaf3zcrrs1bjq83y5wp9xxj2cbmn4k"; depends=[Biobase Mfuzz]; }; - cydar = derive2 { name="cydar"; version="1.20.0"; sha256="07lz3smlc4lsl3r2dnjjfvpymcw8msh2695v41vnrpabij489srl"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; - cytoKernel = derive2 { name="cytoKernel"; version="1.2.0"; sha256="1h49gmldw3bwwqsn05shsqxfwysxq5v06awn4v0dwnrxqgra0qym"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - cytoMEM = derive2 { name="cytoMEM"; version="1.0.0"; sha256="0p822gg2r1842csyyyrxwh8pr8qa452zij8h0n5wi52wwmgdli6l"; depends=[flowCore gplots matrixStats]; }; - cytolib = derive2 { name="cytolib"; version="2.8.0"; sha256="18b532sicca5l8sn334prrm7g1z1cakiwydccz4i833168pnsjyg"; depends=[BH Rcpp RcppArmadillo RcppParallel Rhdf5lib RProtoBufLib]; }; - cytomapper = derive2 { name="cytomapper"; version="1.8.0"; sha256="1svr120n0a7mphi1nr6qds7iqj9dgdi2q0l6lfkx37dc89wd3nwr"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats nnls raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; - dStruct = derive2 { name="dStruct"; version="1.2.0"; sha256="1wxvqs09aflwfrka8aij0sxwqwzm8ma2ab06wcs778l2gki230dv"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; - daMA = derive2 { name="daMA"; version="1.68.0"; sha256="1mpjvl24wsdmpgra3iasgfvy29m71318gj6j1gg6081w0n4cq72m"; depends=[MASS]; }; - dada2 = derive2 { name="dada2"; version="1.24.0"; sha256="0nvjnmcjh0i660y8s3rh9b3zl163wxdx7qm2n36m6vf0iy987l4x"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; - dagLogo = derive2 { name="dagLogo"; version="1.34.0"; sha256="1k7a750gf0ww0s3pzxbd6ff5725321bq787z2r2lg6ysxh387f1l"; depends=[BiocGenerics biomaRt Biostrings motifStack pheatmap UniProt_ws]; }; - dasper = derive2 { name="dasper"; version="1.6.0"; sha256="0cv51fkmi29cnba750fkayycfgsn93wh5xll0m5rjpqz7lxzc83s"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; - dcGSA = derive2 { name="dcGSA"; version="1.24.0"; sha256="1p0i81bh6knkyy0d86icsa4dcdx0mahhdgcg3fyqnzn6bhwhk3bg"; depends=[BiocParallel Matrix]; }; - dcanr = derive2 { name="dcanr"; version="1.12.0"; sha256="0c4x3b8azcrqlkhbs7db4qh7828yx311bx1bng6wy7121asni4kz"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; - dce = derive2 { name="dce"; version="1.4.99"; sha256="140w6zf3vzi40n1gvlln88b0fk2dgyqfnjznizhsk9wnapqq3540"; depends=[assertthat dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger magrittr MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang shadowtext tidygraph tidyverse]; }; - ddCt = derive2 { name="ddCt"; version="1.52.0"; sha256="03vgihxh8k33vdd1g96iwy69lf9zl3rg2bn0zdnbhrj7rfiqvj3q"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; - ddPCRclust = derive2 { name="ddPCRclust"; version="1.16.0"; sha256="0pfscgbc241if2bj1xsj56nxcd31qq0wm39daznnjk155j5bfmx4"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; - dearseq = derive2 { name="dearseq"; version="1.8.4"; sha256="1zsqsgf243gq1k57mw11d6apzccnq531mwg2wzw9mjrs1m0jsfzl"; depends=[CompQuadForm dplyr ggplot2 KernSmooth magrittr matrixStats patchwork pbapply reshape2 rlang statmod survey tibble viridisLite]; }; - debCAM = derive2 { name="debCAM"; version="1.14.0"; sha256="1ynz57kkxl8nx80zhh1vhhydqb5n6r9d7p69f0k9nj8rp4hdgng7"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; - debrowser = derive2 { name="debrowser"; version="1.24.1"; sha256="064dsvy5p9dibnk77iyq9ha4dqpbnr5gfmfykzhwgnkcxli9anhd"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; - deco = derive2 { name="deco"; version="1.12.0"; sha256="18n5zgln33c79jbjzjlivs8ihyg8zci6minfqlvagxgzcpa67k0m"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; - decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.12.0"; sha256="04hg9bbga2s8scjxfd8wjlmr45nzzvh8d6gr0w929sybx4nj2qz6"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - decontam = derive2 { name="decontam"; version="1.16.0"; sha256="1g9hcfcfnpq6z21069yw0pyzncwznmvxb2xalg4y6y1604dy98q9"; depends=[ggplot2 reshape2]; }; - deconvR = derive2 { name="deconvR"; version="1.2.0"; sha256="091z3lncamscsvzj63zzbw7dr7vnkn0jwfkm5ljq4112w4rxgrm3"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit nnls quadprog rsq S4Vectors tidyr]; }; - decoupleR = derive2 { name="decoupleR"; version="2.2.2"; sha256="0q1w8yw3bwx8ai5z8rw8lz97w4cplxijq93634hza2vgkig1ck9m"; depends=[broom dplyr magrittr Matrix purrr rlang stringr tibble tidyr tidyselect withr]; }; - deepSNV = derive2 { name="deepSNV"; version="1.42.1"; sha256="0bgj1grv3a5bqhcdsw445x49kl3pz367svy6fnrzfsk9bmj46kgn"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; - deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.10.0"; sha256="1v15v7lhxaymj2940k11z5bg5zpqsgncdpc4sxw8ff89m1ilwrlk"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; - deltaGseg = derive2 { name="deltaGseg"; version="1.36.0"; sha256="1a2p4mx88n2hrg30gkilhisjf1hbnjqqv86hcji2ypz54axx7jdv"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; - densvis = derive2 { name="densvis"; version="1.6.1"; sha256="0is5gxdd2m9qhdzkr8cs22f3kp5qjy45x9hcws01189px637pk64"; depends=[assertthat basilisk Rcpp reticulate]; }; - derfinder = derive2 { name="derfinder"; version="1.30.0"; sha256="1zyrfz26k8mscssfk7f0sjqgaf3xbp6ns89b4sfj2mpmf7m4m7rv"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; - derfinderHelper = derive2 { name="derfinderHelper"; version="1.30.0"; sha256="0r7zbx5bfmh5cjs12y8d9qwz53nz340gdy3sx7zcn4rzn7rpslp5"; depends=[IRanges Matrix S4Vectors]; }; - derfinderPlot = derive2 { name="derfinderPlot"; version="1.30.0"; sha256="0wp4bj9fccqccyz6nal2y52j88sb9llli65psnvnz2kv2m30j23p"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; - destiny = derive2 { name="destiny"; version="3.10.0"; sha256="1c85ky5ggdsi0ab1l4ipl85gc1kj1zv3wp08qrvslax3z0yw0ljy"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; }; - diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.78.0"; sha256="17m2m4srjafdj2c16lrh9kp82il5pnbcfhzn3kcyb1am2yyr6whi"; depends=[minpack_lm]; }; - diffHic = derive2 { name="diffHic"; version="1.28.0"; sha256="1gj3691ngsxkbh9n985jnm387xgcwy943fnjwfd03ycgpl5lv5js"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; - diffUTR = derive2 { name="diffUTR"; version="1.4.0"; sha256="018bpkg39mgw0y67d9b2n1h0i4p0383wj1kk4jfldvh9qa3hl3n5"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; - diffcoexp = derive2 { name="diffcoexp"; version="1.16.0"; sha256="0l9gx1bvr0s9nys8qicw04s6kp5h7dg377bmlnjylygxn4znkjdf"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; - diffcyt = derive2 { name="diffcyt"; version="1.16.0"; sha256="0mysylzmg24g7lm1xan4yklzqmskfgh53j6vjcz2gzakz5rq3rdb"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; - diffloop = derive2 { name="diffloop"; version="1.24.0"; sha256="0v0jg9y08xzw775x2lm82ig1ag4wjf4z2l6a66zmk6qbn59dwj1g"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; - diffuStats = derive2 { name="diffuStats"; version="1.16.0"; sha256="0pkr77x48p3k5ahn7jfshd1zrzwqy57ynp8crh1ji0288hzrw78n"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; - diggit = derive2 { name="diggit"; version="1.28.0"; sha256="084nbx8sgdk3madsqgpia6jcl4fw20dzwbvphhbkws5yghf49pg8"; depends=[Biobase ks viper]; }; - dir_expiry = derive2 { name="dir.expiry"; version="1.4.0"; sha256="098wzm8hlpy70c99k2sl4k8z2dllhw7rwdj8dhcskr7kaw71k3sq"; depends=[filelock]; }; - discordant = derive2 { name="discordant"; version="1.20.0"; sha256="0896ch07zpbwif48nz9n91gzsdkf7ax68vylhlfvz5mbgdd1cc3f"; depends=[Biobase biwt dplyr gtools MASS Rcpp]; }; - distinct = derive2 { name="distinct"; version="1.8.0"; sha256="0g7591km80zz1jhy5d8ys9snmva79prx2v4sdm57whn93mxqyp0l"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo Rfast scater SingleCellExperiment SummarizedExperiment]; }; - dittoSeq = derive2 { name="dittoSeq"; version="1.8.1"; sha256="0vi0hcyffaxp6yxsrq95bdlrhr85dvbqm9c7rg6a6blkfgwhlzb4"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - divergence = derive2 { name="divergence"; version="1.12.0"; sha256="0zh38cl5rsi7mx9nijhz8qrbjgfzrc4hgkcyywxady315zxfbl7y"; depends=[SummarizedExperiment]; }; - dks = derive2 { name="dks"; version="1.42.0"; sha256="1ljxin1c36glri7cq5mgw929gaivdakqhssdyblciy4y8qpkxa3s"; depends=[cubature]; }; - dmrseq = derive2 { name="dmrseq"; version="1.16.0"; sha256="1c99l62fi26bnbvpzrlsvvs722za0l5vfhddcrhzzzasabhccb4n"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; - doppelgangR = derive2 { name="doppelgangR"; version="1.24.0"; sha256="01n0xkd0fkdwiwrnd28pk08yf2n0004q7n2w87wirw65g04f56zd"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; - doseR = derive2 { name="doseR"; version="1.12.0"; sha256="1g793np07a9npv7vl8fwr9ijd7hbka6k101py3m99rw4wnp6dv0w"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; - dpeak = derive2 { name="dpeak"; version="1.8.0"; sha256="07cv8yd95diwz9aw4d4wqhb5v75rjh8rcii62x0dqb0nf6x47gcn"; depends=[BSgenome IRanges MASS Rcpp]; }; - drawProteins = derive2 { name="drawProteins"; version="1.16.0"; sha256="1rg0kji5rn4zp111cl09dkdd6bichrgd87kqa1623mcxa9xcn7np"; depends=[dplyr ggplot2 httr readr tidyr]; }; - drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.4.1"; sha256="1i9c9c7c83z3i3ldm7qz4wmf4p8aaafakcfyfgzdafhaacxgz4y9"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; - dupRadar = derive2 { name="dupRadar"; version="1.26.1"; sha256="0lffngmhbld8w2j1njbrk1y41iwbigm1ssac23hlq3p0djad4fxn"; depends=[KernSmooth Rsubread]; }; - dyebias = derive2 { name="dyebias"; version="1.56.0"; sha256="0xciqggk4vm31y9zq05iirkrhb9wy5m8pzzdjkzd4k80dvsiny30"; depends=[Biobase marray]; }; - easier = derive2 { name="easier"; version="1.2.2"; sha256="1l2245qcbji1cv2rzvl3sf8xailr4rr0hiw0lqafk885qdqlxg7v"; depends=[BiocParallel coin DESeq2 dorothea dplyr easierData ggplot2 ggpubr ggrepel matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix]; }; - easyRNASeq = derive2 { name="easyRNASeq"; version="2.32.0"; sha256="1dy1prn7qjvw7kjmq5cgdd0yvpw167f9m2azg1wxn2xfrdyb5ipr"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; - easyreporting = derive2 { name="easyreporting"; version="1.8.0"; sha256="1jpgaa55zqnhqla0kid200c63ghwv0apm7p1g1z5ybrfxdlfrrkv"; depends=[rlang rmarkdown shiny]; }; - ecolitk = derive2 { name="ecolitk"; version="1.68.0"; sha256="07dax788x8p5dxwkw24hnlzkcpy72swzxl4ynhivjwixwy248diz"; depends=[Biobase]; }; - edge = derive2 { name="edge"; version="2.28.1"; sha256="1yp80qc6ji11ln8zxs3g3rm6k0jh2v20sqfm5h2pqlfw3nn5yqal"; depends=[Biobase MASS qvalue snm sva]; }; - edgeR = derive2 { name="edgeR"; version="3.38.4"; sha256="1ww69xrg9qrmq7dix2k48j6akgn58ss3340hm7pjvzx508x1j6n6"; depends=[limma locfit Rcpp]; }; - eegc = derive2 { name="eegc"; version="1.22.0"; sha256="16ixc3bn5qkqy5w38428avzrd078xq5h2r8g0csms9b09hxmj65z"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; - eiR = derive2 { name="eiR"; version="1.36.0"; sha256="0pnv2cfdkagq31v2q7x9yfzi1q79nj76k1i0d92wzkxh8j2rnmhh"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; - eisaR = derive2 { name="eisaR"; version="1.8.0"; sha256="1c1nmrc6xvmxk40wiwrqysvnslrfr318lypd6qbgh7h3z5n70s0w"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; - enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.2.0"; sha256="06wycza921fqycwff7fbyjxp64p7lyqinjglvwgv9jk85pxm1dxp"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; - enrichTF = derive2 { name="enrichTF"; version="1.12.0"; sha256="0fv50ma7jaqqbrzaznzvk6vza76if40f5vbxvl22s1ymk5chwk50"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; - enrichplot = derive2 { name="enrichplot"; version="1.16.2"; sha256="0qh7bci3rn6y2fl45izrdb62jcm6j0zxxg4pyp4mvvgjvka5lnss"; depends=[aplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext yulab_utils]; }; - ensemblVEP = derive2 { name="ensemblVEP"; version="1.38.0"; sha256="1xllmsdxz0v0fg62piwxh2r96k1s4fykkznpn6dzqg749x1nzb68"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.20.2"; sha256="12n21dcimdhgyjzk33m6xbv0m9ihgyzcf66vr1jr5ycv3rq2s7xc"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; - epiNEM = derive2 { name="epiNEM"; version="1.20.0"; sha256="1bi0pjmdvlvfjvl6m6r7hd3bd6jdh18i3bnk3s6vpnb52hi35a07"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; - epialleleR = derive2 { name="epialleleR"; version="1.4.0"; sha256="0qw2wvrbfin2l80id06pr779l1mkvlafadkl3ja4s4nmn2ip5yfn"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; - epidecodeR = derive2 { name="epidecodeR"; version="1.4.0"; sha256="1fingfn0rbygvlhkgva6999sw4xc8g7k6w8nm86vw3dz5c77mq5f"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; - epigenomix = derive2 { name="epigenomix"; version="1.36.0"; sha256="15drlib696rylc4952rjnxrc0hfn5nskap93sz6f98b9v1g9gsmk"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; - epigraHMM = derive2 { name="epigraHMM"; version="1.4.0"; sha256="13cfc86yz7wvjm3mqnmmcqq0q01w35s4vwzjhvrkwck1yn4kkpf4"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; - epihet = derive2 { name="epihet"; version="1.12.0"; sha256="0v002h96b4p2sb30iszcvfvnzqm5dnw8klypmd0496zcr7dqk8jk"; depends=[data_table doParallel foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; }; - epimutacions = derive2 { name="epimutacions"; version="1.0.3"; sha256="1ga5z7w5gimzzf0zhqv3ina7vhjkas0pngjmjxpgmpk4c5z6v76j"; depends=[BiocGenerics BiocParallel biomaRt bumphunter epimutacionsData GenomicFeatures GenomicRanges ggplot2 IRanges isotree matrixStats minfi robustbase S4Vectors SummarizedExperiment]; }; - epistack = derive2 { name="epistack"; version="1.2.0"; sha256="0vlxdl99y1hl6pzsc55khgw5r102vvlfqlm2d7z21vnvxr4dwijr"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors SummarizedExperiment viridisLite]; }; - epivizr = derive2 { name="epivizr"; version="2.26.0"; sha256="1hzhx062qwfzg2fr61zzsnfzzkyn3z0i5b1pdxc99ba32qx1bphz"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - epivizrChart = derive2 { name="epivizrChart"; version="1.18.0"; sha256="0pyyypp75nbbxqcsid50r16qdhj280snl4jwbxqfjnqiyjh7wsrm"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; - epivizrData = derive2 { name="epivizrData"; version="1.24.0"; sha256="0givnx3if0jrxaflrz89g0qfzd9vnbm4dxc9mkyi06z8nbnhvwd0"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; - epivizrServer = derive2 { name="epivizrServer"; version="1.24.0"; sha256="0qs9l270pbpgrc1fim1spylbncgjkjrkd2mv2xvq7bvfc2h52wqk"; depends=[httpuv mime R6 rjson]; }; - epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.24.0"; sha256="1i8s27sw7dpsd6cmpfchc4qby34jbyqabdm0xplva89jfjn40gda"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; - erccdashboard = derive2 { name="erccdashboard"; version="1.30.0"; sha256="1nnxp34cj9zgk0bspq92jx9hi33777wdcvw3acykq9vy536ndi80"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; - erma = derive2 { name="erma"; version="1.12.0"; sha256="1ilq01cr2ipxpmp422fikiz6nj4nasjhj0ikcagjn2zmmarpgi1b"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; - esATAC = derive2 { name="esATAC"; version="1.18.0"; sha256="043r0mh4m26bx1r07alvidhl4bs8hxz5cmpkj6inl3q7xcv5wx0b"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; - escape = derive2 { name="escape"; version="1.6.0"; sha256="0llvja5aaqybr3ksyl7f1qjga0ax920y5mgnc5qbqbgzn02zh1fg"; depends=[BiocParallel broom data_table dplyr ggplot2 ggridges GSEABase GSVA Matrix MatrixGenerics msigdbr patchwork reshape2 rlang SingleCellExperiment stringr SummarizedExperiment UCell]; }; - esetVis = derive2 { name="esetVis"; version="1.22.0"; sha256="1nsh1hybcjf8gc79zzsbjjfr6l40l4n5jrnhrx6my35fmfn1c482"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; - eudysbiome = derive2 { name="eudysbiome"; version="1.26.0"; sha256="1pmk1x221hpds68yq2izwrfmvwd6v0gi0r40ggnlc9zrpx2s9fpm"; depends=[Biostrings plyr R_utils Rsamtools]; }; - evaluomeR = derive2 { name="evaluomeR"; version="1.12.0"; sha256="0wvha5ppx937b6qhxf95j0bwav07gq1bs2hw2q487mssksd7s1r2"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; - exomeCopy = derive2 { name="exomeCopy"; version="1.42.0"; sha256="0wfigjicbz22dijibbcz38j7javlj891q2f9mgwjpg6pwb0xi178"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - exomePeak2 = derive2 { name="exomePeak2"; version="1.8.1"; sha256="1vr5sijfddzss96zw560i46dgjw5jwrmi5dbgqjvbrrrr371sbk2"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DESeq2 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magrittr mclust Rsamtools rtracklayer S4Vectors speedglm SummarizedExperiment]; }; - extraChIPs = derive2 { name="extraChIPs"; version="1.0.4"; sha256="1b6kfs0lngvl6wy6a5d5qavls8jakbkjhyq7acrjgqnd94cqndr5"; depends=[BiocIO BiocParallel broom ComplexUpset csaw dplyr edgeR EnrichedHeatmap forcats GenomeInfoDb GenomicInteractions GenomicRanges ggforce ggplot2 ggrepel ggside glue Gviz InteractionSet IRanges limma RColorBrewer rlang Rsamtools rtracklayer S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect vctrs VennDiagram]; }; - fCCAC = derive2 { name="fCCAC"; version="1.22.0"; sha256="1dn8srjg505725l3arx3cajd2zf0lipq9sqhqrym7km4vlpj58qn"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; - fCI = derive2 { name="fCI"; version="1.26.0"; sha256="17gdknml04m18ds0yjik8h8c778r0jqpd182yhzfzq2gldngnaya"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; - fabia = derive2 { name="fabia"; version="2.42.0"; sha256="04apwymadah5vidbyg0ayp1lx6955c2626zgb6lhj6jhkhzqqxdv"; depends=[Biobase]; }; - factDesign = derive2 { name="factDesign"; version="1.72.0"; sha256="0q6bd3fv6s3br19wivaf2qpcxafw244nvipxixp8ss7a4zgn4qf7"; depends=[Biobase]; }; - famat = derive2 { name="famat"; version="1.6.6"; sha256="1fj4j3i632dysj5mj03dlbhjs7zmyrh485z5sqdxkj5cr3gjiw24"; depends=[BiasedUrn clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr mgcv ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; - farms = derive2 { name="farms"; version="1.48.0"; sha256="1mnmgd846ayjx1g31pwk186pq6pv0sdq114axpq41728ai3v347c"; depends=[affy Biobase MASS]; }; - fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.32.0"; sha256="0q6zx6kwgv3lzl2gi8f6c9yzc6vl7kafjfbqnaa7q3a2h26dw9y4"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; - fastreeR = derive2 { name="fastreeR"; version="1.0.0"; sha256="1skqg527nfpwknyj9k369l4qkzdm02dn262g8v3m4y75i9dw9s58"; depends=[ape data_table dynamicTreeCut R_utils rJava stringr]; }; - fastseg = derive2 { name="fastseg"; version="1.42.0"; sha256="1cr1b1jbgp1z1zpf71kl7mljbm2jpi6b97bf3bll3gnagfm489hy"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; - fcScan = derive2 { name="fcScan"; version="1.10.0"; sha256="0yv7ifw0xxx1v9z8dxszv0cb72q3frd74dyxfbvrcs6x9y9v3jzp"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; - fcoex = derive2 { name="fcoex"; version="1.10.0"; sha256="0rkxxf71c5w4pfbzndp7mvq5aqz6qab4msb8xafhf1qakm4gc66m"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; - fdrame = derive2 { name="fdrame"; version="1.68.0"; sha256="0a0vlji2knqkqa6waf6jcvvkhddn3gni0nnzwyhl1b48spqsim5l"; depends=[]; }; - fedup = derive2 { name="fedup"; version="1.4.0"; sha256="1qf9mf9zzli1l8m47slzxpb6j5gwn5khjgvw0abmw5y3m82r2fiq"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; - ffpe = derive2 { name="ffpe"; version="1.40.0"; sha256="034w4q9rgzad5mhk1vjpsgdzcp3snh9bk322gc581sls17502wdb"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; - fgga = derive2 { name="fgga"; version="1.4.0"; sha256="0m2vr8ny5m635ycsk819l65ppfwlyymb5vkzma0w0f25z328cg2b"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; }; - fgsea = derive2 { name="fgsea"; version="1.22.0"; sha256="0innyggai6l4fpl4qrblzdc52vqw9jaszmip0yr1lv7rzwyl6mpg"; depends=[BH BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; }; - fishpond = derive2 { name="fishpond"; version="2.2.0"; sha256="0svp4yh0srhzbbxy1grchzdd9yzchadjp3d2sy2n9xpwxzpkhrym"; depends=[abind GenomicRanges gtools IRanges jsonlite Matrix matrixStats qvalue Rcpp S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; - flagme = derive2 { name="flagme"; version="1.52.0"; sha256="147m79v00gfk4fqjy9skacscnfyslxz0i9y4g7a5vwxz3mrrzidc"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; - flowAI = derive2 { name="flowAI"; version="1.26.0"; sha256="19964p0gni9x61fx24alb713dqyqd816l8s6azm6q0v89y15rqzl"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; - flowBeads = derive2 { name="flowBeads"; version="1.34.0"; sha256="1nn19kv3z0pv3hbvazp1x1lmm8rjw392q4d74rsz1hfwz0vj9j97"; depends=[Biobase flowCore knitr rrcov xtable]; }; - flowBin = derive2 { name="flowBin"; version="1.32.0"; sha256="10h7jhadmr1l8qw94fsxcrq581ir9136w91ah84c95m7297nr5r8"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; - flowCHIC = derive2 { name="flowCHIC"; version="1.30.0"; sha256="0zj76ymr6cs27pg0k9gwzr67y5c3iav40fs4rjcjsi26bv5vxpsy"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; - flowCL = derive2 { name="flowCL"; version="1.34.0"; sha256="05dcxl99sw6d1ngq3wl61y1knmyrf4l9b7nrfmcbigb1isxgjy26"; depends=[graph Rgraphviz]; }; - flowClean = derive2 { name="flowClean"; version="1.34.1"; sha256="0zqgccbfqm6hpi07i5nq5gd626imb6w5xkfb6q8pc0nkkz48mrfh"; depends=[bit changepoint flowCore sfsmisc]; }; - flowClust = derive2 { name="flowClust"; version="3.34.0"; sha256="055vm9s8aha92znhpjqkipzprw8bkrinwjaik4ygmhym7w6vbblk"; depends=[Biobase BiocGenerics flowCore graph]; }; - flowCore = derive2 { name="flowCore"; version="2.8.0"; sha256="17nci6rc4i0vs0ibw5q8zy30ap7q4550qpq4ifkbblqbyzxlzkhr"; depends=[BH Biobase BiocGenerics cytolib matrixStats Rcpp RcppArmadillo RProtoBufLib S4Vectors]; }; - flowCut = derive2 { name="flowCut"; version="1.6.0"; sha256="0p8mgx1q3hw9pfhg41mv9pigx0rakvhsdx5f3dlsqdv2ll85gi98"; depends=[Cairo e1071 flowCore flowDensity]; }; - flowCyBar = derive2 { name="flowCyBar"; version="1.32.0"; sha256="0hrccry4a5m3gg9zkawvhhlr4a3062vrq50gg5c48s0jvdng03hx"; depends=[gplots vegan]; }; - flowDensity = derive2 { name="flowDensity"; version="1.30.0"; sha256="0g8h43w9cb8l8dz14lahxqgy7ras48dl06c38b8j9bpissav68f3"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; }; - flowFP = derive2 { name="flowFP"; version="1.54.0"; sha256="0hmlajm6vdzrx3vmhi4wv4l0qszqc7z18ls361zrk1679nyxa4ms"; depends=[Biobase BiocGenerics flowCore flowViz]; }; - flowGraph = derive2 { name="flowGraph"; version="1.4.0"; sha256="0im9mjyynfl7yda6xcwbzai42p2q0q3g0f0j82hh044lidhpc14d"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; - flowMap = derive2 { name="flowMap"; version="1.34.0"; sha256="1yiw3fs850yi712bcx5j1v8sh0yavqzr0hnlxjbx6rpfp9wnrs5a"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; - flowMatch = derive2 { name="flowMatch"; version="1.32.0"; sha256="095azgkvjc5h4ycjgdw846gn4qizw29xmk4l5mqir4yvnlhxzaw9"; depends=[Biobase flowCore Rcpp]; }; - flowMeans = derive2 { name="flowMeans"; version="1.56.0"; sha256="1n4li43ydwwf5gvgmdml4ba28cxymybg5wnz6jvp35n959fwxv6y"; depends=[Biobase feature flowCore rrcov]; }; - flowMerge = derive2 { name="flowMerge"; version="2.44.0"; sha256="00sypimyhjgy44jh0ba200by79kgypm7yyqy7hr7y80rzxgkn55s"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; - flowPeaks = derive2 { name="flowPeaks"; version="1.42.0"; sha256="1a35ss0szgscfkvqvpdvvb9vgclhml27ggj7rpw4ndkl0m61565f"; depends=[]; }; - flowPloidy = derive2 { name="flowPloidy"; version="1.22.0"; sha256="0v5yci4zlf94wf0zgzdbmmlx0hcx5rz2d1dzmb0w8b6sckfvi3b6"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; - flowPlots = derive2 { name="flowPlots"; version="1.44.0"; sha256="0z38qvn2hd4ar17g8vp8fyj595nsys3yhb0m3fvv24mh48vasp4y"; depends=[]; }; - flowSpecs = derive2 { name="flowSpecs"; version="1.10.0"; sha256="1kjcphza5prrzc52aavshyshs2ck0spayp5jvrgk26a2dpk6xqhk"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 hexbin reshape2 zoo]; }; - flowStats = derive2 { name="flowStats"; version="4.8.2"; sha256="1x01gg5ifxh3wp0cp5a23lr9v6l9q5qg8145q2pgn904jkx5wldc"; depends=[Biobase BiocGenerics cluster corpcor fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mnormt ncdfFlow RColorBrewer rrcov]; }; - flowTime = derive2 { name="flowTime"; version="1.20.0"; sha256="1vv6s87brnfrs52s8rspq1xrs6ymq6gcb78ci7dvjj26y3p8pkfn"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; - flowTrans = derive2 { name="flowTrans"; version="1.48.0"; sha256="03amxbhfi3fkk9ip16bvdfnlqzi1by2xywcm8bd9ndimpqq12y8s"; depends=[flowClust flowCore flowViz]; }; - flowUtils = derive2 { name="flowUtils"; version="1.59.0"; sha256="11x362dqb9mjlsbq6g1qkb8hhnkvm22z5s3wkgmpyy9kyifjkm26"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; - flowVS = derive2 { name="flowVS"; version="1.28.0"; sha256="1fhfmwh7ji3n823zl410zcgz0nmjmbc0awl3149vvl2s0p93jj2d"; depends=[flowCore flowStats flowViz]; }; - flowViz = derive2 { name="flowViz"; version="1.60.2"; sha256="08rwzc26jns0wwjsqqmf60bpxsckr5x8skdn9iwl8grp81npcc95"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; - flowWorkspace = derive2 { name="flowWorkspace"; version="4.8.0"; sha256="0riyi9628cx1j5x6hmdd28yq75xh25j8ckcdz8dnb94dpvnhaqss"; depends=[aws_s3 aws_signature BH Biobase BiocGenerics cytolib data_table DelayedArray digest dplyr flowCore ggplot2 graph lattice latticeExtra matrixStats ncdfFlow RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; - flowcatchR = derive2 { name="flowcatchR"; version="1.30.0"; sha256="1ixq18rmarg4kr6l747699b48zz6cj131zyfbmj5i28sdmbwjk1d"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; - fmcsR = derive2 { name="fmcsR"; version="1.38.0"; sha256="1mblmk21dxc9v2fikhvfg2njwgl190gkysppl6msxizwcmxsmh30"; depends=[BiocGenerics ChemmineR RUnit]; }; - fmrs = derive2 { name="fmrs"; version="1.6.0"; sha256="1jds04azfjdpn9pmmh0ghc274h4iqz5334gv6aq30w2m7gws35nz"; depends=[survival]; }; - fobitools = derive2 { name="fobitools"; version="1.4.0"; sha256="1y50xyiy02zpnvvxfp0sskgrp515m2d54nn6gqjsdv0vv8wlkvcs"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; - frenchFISH = derive2 { name="frenchFISH"; version="1.8.0"; sha256="12nixzdqkaxfv3jwcbf20npc9hpzkxpsm4a5znivg8ac60cw286p"; depends=[MCMCpack NHPoisson]; }; - frma = derive2 { name="frma"; version="1.48.0"; sha256="1w0q34jkmzqwdjxl4xrvg5nmv11n4l2qf180fwrknvp8am6nf6yx"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; - frmaTools = derive2 { name="frmaTools"; version="1.48.0"; sha256="0paas86hfqkvcgv00bbgidcaps8p3gvmfy8prq4rcda4lv8i67bl"; depends=[affy Biobase DBI preprocessCore]; }; - funtooNorm = derive2 { name="funtooNorm"; version="1.20.0"; sha256="02wkjj2nbghwa0ybmh58hl7r2863h9nw95rsd42xzvcp9vxkpfzz"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; - gCrisprTools = derive2 { name="gCrisprTools"; version="2.2.2"; sha256="023csgiik16k72jnb3322qvbrz0vl6pkmdmki29jlj1wmdfz7x6j"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; - gaga = derive2 { name="gaga"; version="2.42.0"; sha256="17a2a73lgmgmrkznysd23c1qbddxcsnjdma7xa0pfjwrwskcisxb"; depends=[Biobase coda EBarrays mgcv]; }; - gage = derive2 { name="gage"; version="2.46.1"; sha256="01y04jcy7a9fksyhj0nq37n1inkrpqf4qv117lflvipbx0dsw4gl"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; - gaggle = derive2 { name="gaggle"; version="1.64.0"; sha256="1w2819cx7s2hazifhv8iw54jjcvzacjwcpix045ay4fa98ryg7fz"; depends=[graph rJava RUnit]; }; - gaia = derive2 { name="gaia"; version="2.39.0"; sha256="023mw2dy6dni7h7a1ild1y6l741kp9bmjzzfyi70jipji1jig4pa"; depends=[]; }; - garfield = derive2 { name="garfield"; version="1.24.0"; sha256="1dp8z778ca4pj8da9nlhm80845mv4k7njnz5q4cdy7w1bhlfcjb7"; depends=[]; }; - gcapc = derive2 { name="gcapc"; version="1.20.0"; sha256="18y1xs8zy76j9vbxmx7d6g3rd2mw8diib083948l4sr2ipnb9rvl"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; - gcatest = derive2 { name="gcatest"; version="1.26.0"; sha256="1b6iscydh2c70dv2m5qdjf6zc3wbmk2jk18x00rbcxl10ckc451a"; depends=[lfa]; }; - gcrma = derive2 { name="gcrma"; version="2.68.0"; sha256="13a8igr2b02gsa6n3437kb33wg6h7si82fmqi35dzpfzhvx0qf6d"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; - gdsfmt = derive2 { name="gdsfmt"; version="1.32.0"; sha256="1cdwyivgfc6yw5hj9b3j57wx55gckwhx6fwx2lvqynrjzjyzf3q0"; depends=[]; }; - geNetClassifier = derive2 { name="geNetClassifier"; version="1.36.0"; sha256="1kh7mp5h0n7yd1klcd7w4v7i3fh9pkmvgf7189wangfzbcsr4f70"; depends=[Biobase e1071 EBarrays minet]; }; - gemini = derive2 { name="gemini"; version="1.10.0"; sha256="0kx38b5xaksn9ikk98b60hnalnxlcb9xs3vwbwsn90cg9h94cdar"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; - genArise = derive2 { name="genArise"; version="1.72.0"; sha256="0jmk7ddwvh8hy9ri6a6rfhmbaglpqq43qxh1hjdw5k4ci87l7kd3"; depends=[locfit tkrplot xtable]; }; - genbankr = derive2 { name="genbankr"; version="1.24.0"; sha256="141adiac75vn232cn8bp1skzn2h4ns85k3g5wq179b6y6mr4zcv6"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; - geneAttribution = derive2 { name="geneAttribution"; version="1.22.0"; sha256="0f0nralfhzv59q9ia3mjdhdsrvi34z5mafgxb6gsb3ilbvx0yvz7"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; - geneClassifiers = derive2 { name="geneClassifiers"; version="1.20.0"; sha256="10kb03lkac3cc1pagl6az0phhw8nhmrckarshf9xqncj99rslbcw"; depends=[Biobase BiocGenerics]; }; - geneRecommender = derive2 { name="geneRecommender"; version="1.68.0"; sha256="1sl8mlz7nzskixjh5358wx4jvamzp5792dj2irjbfab2cr3kj8lc"; depends=[Biobase]; }; - geneRxCluster = derive2 { name="geneRxCluster"; version="1.32.0"; sha256="1q9l7734n2w23945x5sfi5yrvs09fq9b62y1li240amajpdqws1z"; depends=[GenomicRanges IRanges]; }; - geneXtendeR = derive2 { name="geneXtendeR"; version="1.22.0"; sha256="0qbhgarlr71fpg1ggxbqnj4h5n2wywl2zm95vdqr6vypplg6hjfa"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; - genefilter = derive2 { name="genefilter"; version="1.78.0"; sha256="1lp3alnljhsil8zylf8rvf8ik4wmsyciy3ij4rr9l4191dkkp4aq"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; }; - genefu = derive2 { name="genefu"; version="2.28.0"; sha256="1a3q0qh5z5zva0d4jz521pcmig12h1hib3prbnnw1a74jxryan1i"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; - geneplast = derive2 { name="geneplast"; version="1.22.0"; sha256="1k3s6ic2bawa690s641bqa3s412rk628cc55dwd3i43064ff25rc"; depends=[ape data_table igraph snow]; }; - geneplotter = derive2 { name="geneplotter"; version="1.74.0"; sha256="13230mzrdralnvf9jp032s16a8mk3kx5476nnvpa4pvcgp1i1ijc"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; - genoCN = derive2 { name="genoCN"; version="1.48.0"; sha256="0646y4y2wv367gdj0cy78hddyy0h964zz5ij8v9lzs0w63a72497"; depends=[]; }; - genomation = derive2 { name="genomation"; version="1.28.0"; sha256="0rvay7gs4g2wi6h42kln8xwy9b05axj1x8mkfayl6pnnlva6xj79"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; - genomeIntervals = derive2 { name="genomeIntervals"; version="1.52.0"; sha256="1b2i1bdl9n1a7c9v8757w76s1aahhph6y0a7z9axanb8g8gx7bdp"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; - genomes = derive2 { name="genomes"; version="3.26.0"; sha256="1a8cla2k3x5x3pvxahzl5vfym5dxcffggk1jwzp91qqkp6dss0jf"; depends=[curl readr]; }; - genomicInstability = derive2 { name="genomicInstability"; version="1.2.0"; sha256="1lx4ln867wxc2bhn24s7b4xsrb1lymq48lw6dkc4s9dm98h49y4z"; depends=[checkmate mixtools SummarizedExperiment]; }; - genotypeeval = derive2 { name="genotypeeval"; version="1.28.0"; sha256="13pyr82xcwzmch9w0rlzlwzis5qs9fqsy0dknn7n79jj5ws6snr6"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; - genphen = derive2 { name="genphen"; version="1.24.0"; sha256="1m60qagcxviix4zjzfhvrwchbjq2clss6mivb8q07bcq369yw1b8"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; }; - gep2pep = derive2 { name="gep2pep"; version="1.16.0"; sha256="1ry5h095gg1kq9idsq94dz843ldf6jz1pyg9sryfkszzyi7ddfhh"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; - gespeR = derive2 { name="gespeR"; version="1.28.0"; sha256="0i2r79k77rkw7yhwvpzif1m0llfxv42i9inad7i46630dxpwa1bf"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; - getDEE2 = derive2 { name="getDEE2"; version="1.6.0"; sha256="0c2air5mra7g80y7r7qpy2hplrh2k38jj5zn4sa5a4fcpniifx7v"; depends=[htm2txt SummarizedExperiment]; }; - geva = derive2 { name="geva"; version="1.4.0"; sha256="0zc9zxw2bifkkiqivmg8bf8xn9sff13bih55k9nxdabsgkkwhyad"; depends=[dbscan fastcluster matrixStats]; }; - ggbio = derive2 { name="ggbio"; version="1.44.1"; sha256="0iyhjalwq1jmldpn20iv8l2kmz6sm20ddry2yz2zn7yq0wszp3vg"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - ggcyto = derive2 { name="ggcyto"; version="1.24.1"; sha256="1cw60x78vqzjmgb5xd3sxyz6zwdaffp3byk34z8d4b3wkh530325"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; - ggmanh = derive2 { name="ggmanh"; version="1.0.0"; sha256="0bcdjvhablnxvakin5a4yhdpv5y5n9rqm21yz51mwjdfgz00p2mb"; depends=[gdsfmt ggplot2 ggrepel RColorBrewer rlang scales SeqArray]; }; - ggmsa = derive2 { name="ggmsa"; version="1.2.3"; sha256="12s6bs8b8lgcllc540dn4mjdvij2cx28l7zgnz8yzcb05dqnisbr"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 ggtree magrittr R4RNA RColorBrewer seqmagick statebins tidyr]; }; - ggspavis = derive2 { name="ggspavis"; version="1.2.0"; sha256="0m0wfswz1jn7zhq527qa7q1x028zzrhg1zkw781w5p5i7ky0qzqf"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - ggtree = derive2 { name="ggtree"; version="3.4.4"; sha256="0h1qlhn4rj7jgd9vrja7lykaglyfvnzwkghvsqj1mvp4niwli7y5"; depends=[ape aplot dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; - ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.6.1"; sha256="0jhk2wqw8mi99n9063wllbl4ajrz1lzqdn7b827316q7ynh8z6ma"; depends=[ggnewscale ggplot2 ggtree rlang tidytree]; }; - girafe = derive2 { name="girafe"; version="1.48.0"; sha256="0633w8dyzrwqgnzj7zhr1hwqh617qpcp7cvs33pgsyxmdh52i32p"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; - glmGamPoi = derive2 { name="glmGamPoi"; version="1.8.0"; sha256="0k1qyljg89jvc4g3ixv8n50a1fmw3yfa7xjdvrfhbk3xsm6n1lh9"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array matrixStats Rcpp RcppArmadillo SummarizedExperiment]; }; - glmSparseNet = derive2 { name="glmSparseNet"; version="1.14.1"; sha256="0xpbxgrfrgysnfcj757a0i9235pivwpga5xz052izyw2p5nfrlr2"; depends=[biomaRt digest dplyr forcats futile_logger futile_options ggplot2 glmnet glue httr Matrix MultiAssayExperiment readr reshape2 stringr SummarizedExperiment survminer]; }; - globalSeq = derive2 { name="globalSeq"; version="1.24.0"; sha256="03fb4cd4nbyik7qjblq1fr94gn2xv6jvnb0jzxksdfb7lj8b0axi"; depends=[]; }; - globaltest = derive2 { name="globaltest"; version="5.50.0"; sha256="0mdh9xm9l70i5y4783xv76arx0601w6sz3l8h5bmpsavsz8kc9s5"; depends=[annotate AnnotationDbi Biobase survival]; }; - gmapR = derive2 { name="gmapR"; version="1.38.0"; sha256="0xmc9js5wpnaggf3ldplyxw5w4f2abavlsfzirr2qpik0ha8f7v8"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - gmoviz = derive2 { name="gmoviz"; version="1.8.0"; sha256="110pdblqnr2flmb2gvba6l22p6mrkrqzd1fi3c6pr80hshs7gc95"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; - goProfiles = derive2 { name="goProfiles"; version="1.58.0"; sha256="1cdnqsb00gbf9ff9bl19inkh20vmppnda2ib85alvwdbzmhsgflw"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; - goSTAG = derive2 { name="goSTAG"; version="1.20.0"; sha256="12ks45lglc23ipkbn89vdlf8l441g9kd2xh49qwinsj6c8zvmd75"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; - goTools = derive2 { name="goTools"; version="1.70.0"; sha256="1bxxwrn420vlwkc9jn8jjrvykzzsr7j11lb6mv0i1zrkwpmcmcgp"; depends=[AnnotationDbi GO_db]; }; - goseq = derive2 { name="goseq"; version="1.48.0"; sha256="1w0rwzhqkvp2x7y5v0qcyjbss0p95gb1jrnx5sdkqginbvrmrd48"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; - gpart = derive2 { name="gpart"; version="1.13.0"; sha256="1518wjkaw22ckgpwl6si83bhijvib0r0kgs9s4das41f0ygi92sd"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - gpls = derive2 { name="gpls"; version="1.68.0"; sha256="0ai49lk7pba7k42p9wb67sp744gvkkb2rgfqzdpdwnjmndfxqyib"; depends=[]; }; - gprege = derive2 { name="gprege"; version="1.39.0"; sha256="12yjyb7a7jc86hdi3a3cavqxfzkhmds1m2vigzw5ihhx6028pa78"; depends=[]; }; - gpuMagic = derive2 { name="gpuMagic"; version="1.12.0"; sha256="1g6zxs0wjj6fh23iv65iagyc8lrnzdjkbjv1yf8fq57brzhdl8zl"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; - granulator = derive2 { name="granulator"; version="1.4.0"; sha256="0bw07kcrg3cwd73crfgm71hdjrp9pprrg5mzx55rmabymn78915s"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; - graper = derive2 { name="graper"; version="1.12.0"; sha256="18dfk4d9cxgzmgb8wbagd1qlvlpwgs6nzdz6nzif6n4l6jg8x4b7"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; - graph = derive2 { name="graph"; version="1.74.0"; sha256="1b8hrjwjg82kicls1496fxfzv75xjvq2k6r9apzsd3qlbyg3ilg4"; depends=[BiocGenerics]; }; - graphite = derive2 { name="graphite"; version="1.42.0"; sha256="0nl5mkgrvf7vsqjy48ij9b1dmxfvp9lf8cpay55h93c4qz4x606g"; depends=[AnnotationDbi graph httr rappdirs rlang]; }; - groHMM = derive2 { name="groHMM"; version="1.30.1"; sha256="0v2mk7xcy483w2nygpmyjp73kj3v5pkk1kf1wr41n33dxqlddqai"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; - gscreend = derive2 { name="gscreend"; version="1.10.0"; sha256="1dymj9s11nqjv25a3adnhllkgi5dw5lvhgxkg6sd7qpkh1bvbmrx"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; - gsean = derive2 { name="gsean"; version="1.16.1"; sha256="1wmz760qyg281i62xmizy3p2ajfb4s99wnss9h9yys2skmqcl1vg"; depends=[fgsea PPInfer]; }; - gtrellis = derive2 { name="gtrellis"; version="1.28.0"; sha256="1s4xczzv6hz2kyv32xgcq84540w75qr3f644w1s4c3kwxgyq2gff"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; - gwascat = derive2 { name="gwascat"; version="2.28.1"; sha256="19ymdxj8966i4yk0zalfw23938cpv4q7pywg4qb242p44na5y9sl"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; - gwasurvivr = derive2 { name="gwasurvivr"; version="1.14.0"; sha256="1cdknh3ib417ni76wcbns54syqycslj0nzip4pw3sqnsif361ak0"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; - h5vc = derive2 { name="h5vc"; version="2.30.0"; sha256="01vvf4bf4a5sfj5rz1b3bc8smvw3j260q4q11bqbq2xaw5lg64q7"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; - hapFabia = derive2 { name="hapFabia"; version="1.38.0"; sha256="1l50p1hnym8amvdfazp36zp3ijbfsgd8sddbcqivd3rp01898mmr"; depends=[Biobase fabia]; }; - hca = derive2 { name="hca"; version="1.4.3"; sha256="1ryac7jcv17lcns8fja24iwayq4sl76yh4xcyv12pp5f5jgpsv1y"; depends=[BiocFileCache digest dplyr httr jsonlite readr tibble tidyr]; }; - heatmaps = derive2 { name="heatmaps"; version="1.20.0"; sha256="137cblqfn3w2nrlkffrxhpv1fd0ygy8njqf3n09gf2qw4vgzyz0g"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; - hermes = derive2 { name="hermes"; version="1.0.1"; sha256="0l4rynsz03s4rrdf6pn7sq6x9ra11lal9w65fwxvg1qk83b1gcx4"; depends=[assertthat Biobase BiocGenerics biomaRt checkmate circlize ComplexHeatmap DESeq2 dplyr edgeR EnvStats forcats GenomicRanges ggfortify ggplot2 ggrepel IRanges lifecycle limma magrittr matrixStats MultiAssayExperiment purrr R6 Rdpack rlang S4Vectors SummarizedExperiment tidyr]; }; - hiAnnotator = derive2 { name="hiAnnotator"; version="1.30.0"; sha256="0f1imlql09dgckcvf3dr7knr26yjs0r1ryrq54r1lwz57s3rn152"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; - hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.32.0"; sha256="0cf0ris5c2xbbmsjnww9lwmmlhya21gmhxfsmcid4bi9gs94qpci"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; - hierGWAS = derive2 { name="hierGWAS"; version="1.26.0"; sha256="0n8rbk3whs6ysjkdz6zwvdbw5gqrriyzdmyz2b09h6w1dl61cy43"; depends=[fastcluster fmsb glmnet]; }; - hierinf = derive2 { name="hierinf"; version="1.14.0"; sha256="0vls36kpz72vahjgx9ghb6aql2f9r5ny9nyg161jjfs1k4s2pr6d"; depends=[fmsb glmnet]; }; - hipathia = derive2 { name="hipathia"; version="2.12.0"; sha256="15ggym814jkcbx4kn2d9zi430vcgr50wbzvzj2f1d5qbdhbci9sh"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; - hmdbQuery = derive2 { name="hmdbQuery"; version="1.16.0"; sha256="0njxxbm58r6ikdh8j3765zy15paips94qyfhbbpb0xpqz7i1idcf"; depends=[S4Vectors XML]; }; - hopach = derive2 { name="hopach"; version="2.56.0"; sha256="0c2dx9l2dvhx74z4g2wvbz7m1h77jr257snlqsv2fkdv32m623k4"; depends=[Biobase BiocGenerics cluster]; }; - hpar = derive2 { name="hpar"; version="1.38.0"; sha256="07c6r703d5xp7y9bqmqalxgna2qrbk1h5s0d992m7360k259mgrj"; depends=[]; }; - hummingbird = derive2 { name="hummingbird"; version="1.6.0"; sha256="1zy35sayjclwcvv6agnvshxhr6l7nd9l0pxyxcfhj1hrqnw5xn14"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; - hypeR = derive2 { name="hypeR"; version="1.12.0"; sha256="1yk5119jv523kdh3sb85sdkbvrjj4xml8697l3d3f1n84qkicks4"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; - hyperdraw = derive2 { name="hyperdraw"; version="1.48.0"; sha256="0ndw4y6b15jy4w86vfkahmdc81d3ycjsvqy1mxi55dwvd8xq0ap6"; depends=[graph hypergraph Rgraphviz]; }; - hypergraph = derive2 { name="hypergraph"; version="1.68.0"; sha256="0xmryqj5yw1ns6wbhjqbb6h14jlj89zrznzvqnvd4n03ci20kzzp"; depends=[graph]; }; - iASeq = derive2 { name="iASeq"; version="1.40.0"; sha256="1cwx3pc17lrrskzrq2ghj1vgjc2gmnwbkid531qpvdw0ixqb9jhr"; depends=[]; }; - iBBiG = derive2 { name="iBBiG"; version="1.40.0"; sha256="10p9iky61ym8bj1mpyjpslg2ixb3abic5bpfp4yqaqg4vq7a7wip"; depends=[ade4 biclust xtable]; }; - iBMQ = derive2 { name="iBMQ"; version="1.36.0"; sha256="0715hr72wvm14f6vb3j4ns94ii8g7kp6fgb7zjdjmqab92hqm1rd"; depends=[Biobase ggplot2]; }; - iCARE = derive2 { name="iCARE"; version="1.24.0"; sha256="1b09q6z240rc4cx9mz61f1l65khwxlq03f2sal0cf1y2584p4hxl"; depends=[gtools Hmisc plotrix]; }; - iCNV = derive2 { name="iCNV"; version="1.16.0"; sha256="12fyj9nxsfzckyb7qjwg8a4v335hzg0d0fgav3g00i30c7ldqlam"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; - iCOBRA = derive2 { name="iCOBRA"; version="1.24.1"; sha256="1gvra5bgsf6lvs4f2md3xx7xxsx4j8079c2nr8vz9lvy2sfyl6s9"; depends=[dplyr DT ggplot2 limma markdown reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; - iCheck = derive2 { name="iCheck"; version="1.26.0"; sha256="0phc4xr9vclmd2xkcjaa5l8w6v1748hs63asfbl0xl6xgj5475mc"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; - iChip = derive2 { name="iChip"; version="1.50.0"; sha256="0p5n20yjr94l76ibmlcvbq48zw9a14dpdza0k0mg16vq17lqz2rf"; depends=[limma]; }; - iClusterPlus = derive2 { name="iClusterPlus"; version="1.32.0"; sha256="0xzx3vly3p99zc5a69pra4jjp8d3bdhx7dl1l76w459cs58zy0sm"; depends=[]; }; - iGC = derive2 { name="iGC"; version="1.26.0"; sha256="1brdkdclmydj44485irzwva375zp13mf9vjw5xd5lhdq88ishnsc"; depends=[data_table plyr]; }; - iPAC = derive2 { name="iPAC"; version="1.40.0"; sha256="1h7dxq6isc5zbpi01zj4xsncs9a5l4x5lflqv0lfi2n11y8y4x40"; depends=[Biostrings gdata multtest scatterplot3d]; }; - iPath = derive2 { name="iPath"; version="1.2.0"; sha256="1gkw3j3fc5rydxzm3dhv10wwvnhgfb8hic1842irmnb3rqwg0khw"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; - iSEE = derive2 { name="iSEE"; version="2.8.0"; sha256="1smpd3hfs415g4qiz3s9d8qsy5n84ppy23q0vwhfg8gh2lypikzh"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; - iSEEu = derive2 { name="iSEEu"; version="1.8.0"; sha256="1j0ksx6sdk0g44yi3dccgnqhf9jqfzmax131d52q2s6yfn1m1dhw"; depends=[colourpicker DT ggplot2 IRanges iSEE S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; - iSeq = derive2 { name="iSeq"; version="1.48.0"; sha256="09zba3mr55n42kyw89r4vbykczq3y97hsy2a55a2b8zmsh27w2dc"; depends=[]; }; - iasva = derive2 { name="iasva"; version="1.14.0"; sha256="070bda8fxm1gby2jq5zpbd85l10kxhsy7a8jac3s6rpf1saz70m1"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; - ibh = derive2 { name="ibh"; version="1.44.0"; sha256="0l7436yk3hv73zljg00mxa5nyilsxphhwliy5h3a4ci02pdfa92k"; depends=[simpIntLists]; }; - icetea = derive2 { name="icetea"; version="1.14.0"; sha256="1n642pa32yr6lmz4362875p5f6z1zdxdg96ljxfc1fsfkvdhjv0c"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; - ideal = derive2 { name="ideal"; version="1.20.0"; sha256="0bgc7f2c1m777acmfx1lcsiga8kf4db6wx0rb56hwhq2yw2h1x7r"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; - idiogram = derive2 { name="idiogram"; version="1.72.0"; sha256="1w749dmbmgwrbxdpcakd48l6sfcshafqhlkrq5gzb6bhq1ll3xwy"; depends=[annotate Biobase plotrix]; }; - idpr = derive2 { name="idpr"; version="1.6.0"; sha256="1xl73m1lwy0336r5aan8sam8ac61h2flapj7m1ag0acpy0bhvg23"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; - idr2d = derive2 { name="idr2d"; version="1.10.0"; sha256="0la044qyjnic6cbnvsas1dx7xgiz64qp4ygpsb1g6qhk2m0ybzj1"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; - igvR = derive2 { name="igvR"; version="1.16.0"; sha256="0jaj600dcis1xd4hp6zw3j92zqi476zxlnb3lhcsszx7rg6lqnfp"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv MotifDb RColorBrewer rtracklayer seqLogo VariantAnnotation]; }; - illuminaio = derive2 { name="illuminaio"; version="0.38.0"; sha256="1xk057a9w4ps8xi8jyw8imkjcicfmzns8g92grn4af7yiip68h62"; depends=[base64]; }; - imageHTS = derive2 { name="imageHTS"; version="1.45.1"; sha256="18cv1mss1vgm4zwx37nijc1riw2n9lwl73l2cfiqglblgdmyq2sm"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; - imcRtools = derive2 { name="imcRtools"; version="1.2.3"; sha256="1a2gapm9642x7a4m9cl95fpl6qq3zrhgvib8rqzx465d0p47szfw"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table dplyr DT EBImage ggplot2 ggraph igraph magrittr pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph viridis vroom]; }; - immunoClust = derive2 { name="immunoClust"; version="1.28.0"; sha256="10dwlg91wg38s97hivd8fm4wkmv0nv7xcw8dwdh2g7m5pip7nchp"; depends=[flowCore lattice]; }; - immunotation = derive2 { name="immunotation"; version="1.4.0"; sha256="06yknvqz65x3vgc9xykdwhsgqhz75jr038fwnjjr2ir8x9h6fri5"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; - impute = derive2 { name="impute"; version="1.70.0"; sha256="11b0z7py0im6y43k55xpzz5jnvc0ram9rk3n1n4mwhvs0vhy39r2"; depends=[]; }; - infercnv = derive2 { name="infercnv"; version="1.12.0"; sha256="01f021fdxm058733rky46dlvqg7dmf5mn5x9lnq0fspp5665w3bl"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov leiden Matrix parallelDist phyclust RANN RColorBrewer reshape rjags SingleCellExperiment SummarizedExperiment tidyr]; }; - infinityFlow = derive2 { name="infinityFlow"; version="1.6.0"; sha256="14qdamv4ydbqwxw7gfm1yqzgihb7zxpi9irji0a5mnvvyrkzrfpz"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; - intansv = derive2 { name="intansv"; version="1.36.0"; sha256="1x7386g0f1amjhvpb75ma86ifagh73d3yqmh1aq25r3cwgkgi9lc"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; - interacCircos = derive2 { name="interacCircos"; version="1.6.0"; sha256="1jk2mr271dabwjxz3a0habpy0cs6gh4wcdkl9yfb17g41qr3gd1s"; depends=[htmlwidgets plyr RColorBrewer]; }; - interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.34.0"; sha256="0flfn30q4qd0dp39qqswvg83vs568spbyiplqnsrp85nprnrxk9g"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; - interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.34.0"; sha256="0fdwx5ch0ch8axdkfiq7zzhhq5hwcvd6kf8fggw9nd3ah1yjwbdg"; depends=[BiocGenerics DT shiny]; }; - inveRsion = derive2 { name="inveRsion"; version="1.43.0"; sha256="0h2q10xf4x22hy7780w4pvq488921wzjngly8qcc97sa8iacssk3"; depends=[haplo_stats]; }; - ipdDb = derive2 { name="ipdDb"; version="1.14.0"; sha256="12wnl8gpkwvp3lvdw5qfjy8n2wpwgm7hgp0cx4lysyr7hchfjzi1"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; - isobar = derive2 { name="isobar"; version="1.42.0"; sha256="1z8qxdd4kqdi55g84lb8268nd270y4knzrpcm3b1gvxd91pynbq4"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; - isomiRs = derive2 { name="isomiRs"; version="1.24.1"; sha256="14a9a5k435yn4csbhmh9yplyn2k889jhrav31bsaiixfms16v3k8"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - iterClust = derive2 { name="iterClust"; version="1.18.0"; sha256="11j6ssy88v0wxqkx9b4skqi8jww8b4nh1gjl8smlnw98lvf5vwl4"; depends=[Biobase cluster]; }; - iterativeBMA = derive2 { name="iterativeBMA"; version="1.54.0"; sha256="1ykn4cac33w85gxh1bbqcg06xx0jsx1ivq4477h0057y3vf09cck"; depends=[Biobase BMA leaps]; }; - iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.54.0"; sha256="0fll6aqmh4dbrn4pv8nwp5cnsc2jd40clfnb76zzgi6qka5h2kms"; depends=[BMA leaps survival]; }; - iteremoval = derive2 { name="iteremoval"; version="1.15.1"; sha256="0bwl8lzxvf5azwyacv9x16l4kyi8l00xny2s83gp2kng5gyz8602"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; }; - ivygapSE = derive2 { name="ivygapSE"; version="1.18.0"; sha256="04ril40rs4y4j8b8pbxxgj3qzxy5n7vcd9wfdmfr10c9j489sixw"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; - karyoploteR = derive2 { name="karyoploteR"; version="1.22.0"; sha256="0hawq9wi3ikvlcdgnjfy5fiiwfq22zwx1p8xf5h4bpypp96pknsk"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - kebabs = derive2 { name="kebabs"; version="1.30.0"; sha256="04ipdf3vcmg2817i314vkxw8yy358iwq9i23f1bwa86qq0a1q6f0"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; - keggorthology = derive2 { name="keggorthology"; version="2.48.0"; sha256="1a5cjsp610pvr7s27schr3hi06i47v73f0f6n5wzf6062cjvrrbh"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; - kissDE = derive2 { name="kissDE"; version="1.16.0"; sha256="16gx3cpmi1xb78g12aiajm6k93fx5wk0j82kv682dd2j8qzfxq1n"; depends=[ade4 aods3 Biobase DESeq2 doParallel DSS DT factoextra foreach ggplot2 gplots matrixStats shiny shinycssloaders]; }; - lapmix = derive2 { name="lapmix"; version="1.62.0"; sha256="15ydcqvawmwradx20x5jz0lrvfrgfjxgnfcnrxxknv5iqh2d035y"; depends=[Biobase]; }; - ldblock = derive2 { name="ldblock"; version="1.26.0"; sha256="08ss03b93czwb4x60hsi30ad4lmamvq5mxa8nj0g18z68qcraijm"; depends=[BiocGenerics EnsDb_Hsapiens_v75 ensembldb GenomeInfoDb GenomicFiles httr Matrix Rsamtools snpStats VariantAnnotation]; }; - lefser = derive2 { name="lefser"; version="1.6.0"; sha256="0n3gf60c4r1p81ifn4xklmm3npp790p8vw7mdi1f6bb5vm373rj0"; depends=[coin ggplot2 MASS SummarizedExperiment]; }; - les = derive2 { name="les"; version="1.46.0"; sha256="07c805gcyc7b462hbkvkkjajk8sn735j1js452lz67ixf03pwcaq"; depends=[boot fdrtool gplots RColorBrewer]; }; - levi = derive2 { name="levi"; version="1.14.0"; sha256="1dh314yd0zpnmi2vfnf41fhzpg76cgwgzkbm93vcxwrszj53cljc"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; - lfa = derive2 { name="lfa"; version="1.26.0"; sha256="044866h4fnxmzb3sh9vmrd2smgsbcqgvd19dgwxisi418cad577l"; depends=[corpcor]; }; - limma = derive2 { name="limma"; version="3.52.4"; sha256="14xy3qyra2crz31sxgz768mhnhhvcpfhfcigf4xsii643lqcz75h"; depends=[]; }; - limmaGUI = derive2 { name="limmaGUI"; version="1.72.0"; sha256="1sq20bdnc9j93iink9cs1p50alzgqfjcxikr8p0dfvd96c4js5b7"; depends=[limma R2HTML tkrplot xtable]; }; - lineagespot = derive2 { name="lineagespot"; version="1.0.0"; sha256="0bn0rr7c8x576p53d7p7q0hs7dh5y7dm4z5dgcrp9m8pqgdq3n9h"; depends=[data_table httr MatrixGenerics stringr SummarizedExperiment VariantAnnotation]; }; - lionessR = derive2 { name="lionessR"; version="1.10.0"; sha256="182hyz7acnlmprfn3555d1li73abahkylznrnqzizyi20r3nwczq"; depends=[S4Vectors SummarizedExperiment]; }; - lipidr = derive2 { name="lipidr"; version="2.10.0"; sha256="053q300caqn2a5rjxxc6c9b5drrk1y6bllm96rb7nxlwxzkkjlpg"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; - lisaClust = derive2 { name="lisaClust"; version="1.4.0"; sha256="0411vkzz5rh937qcamrsmyvrjbncjgj961lmvd9vqpbf2srvd902"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 purrr S4Vectors spatstat_core spatstat_geom spicyR tidyr]; }; - lmdme = derive2 { name="lmdme"; version="1.38.0"; sha256="1x56d40v9v0jz9dmxqkvpc756fqwh31119qx1bsamrz03263fhw8"; depends=[limma pls stemHypoxia]; }; - loci2path = derive2 { name="loci2path"; version="1.16.0"; sha256="03gqzjn619fz7c53lcj3p7kycdl7minmv81zszf0jw5m8xgab7a5"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; - logicFS = derive2 { name="logicFS"; version="2.16.0"; sha256="06y064fkns71m4h7w7mmf75myd22zv000g7drkxwx25x6jqghcgg"; depends=[LogicReg mcbiopi survival]; }; - logitT = derive2 { name="logitT"; version="1.54.0"; sha256="0z8yphvca5glhwbrzdd5vz07243akm0fyyx8x9004frsyqrsyyva"; depends=[affy]; }; - lpNet = derive2 { name="lpNet"; version="2.28.0"; sha256="17l7k07vf21y4yw5s640xp4lh686y74sd773ij92r2spc3vk4bnm"; depends=[lpSolve]; }; - lpsymphony = derive2 { name="lpsymphony"; version="1.24.0"; sha256="0kc708ss5byzw8qh439mb4nq6hsfmz73gfamiznw3lv352brd33g"; depends=[]; }; - lumi = derive2 { name="lumi"; version="2.48.0"; sha256="06zmll5j1yymsm3byarhllrz4q1w5mzv267a9g6visn73wan8y9d"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; - m6Aboost = derive2 { name="m6Aboost"; version="1.2.0"; sha256="0qi7l52c3m08i4c4vj44azycb5qj99qnjmkpl5j9j13scpancnpw"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; - mAPKL = derive2 { name="mAPKL"; version="1.26.0"; sha256="0zzfdwjssig6km1c630jx8pl0q20c5y16z6jrms43zhbk52h2p1s"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; - mBPCR = derive2 { name="mBPCR"; version="1.50.0"; sha256="1gdd5jj0dpimp0ix2i7dspkkggn0m5d36cvhsvyr0y5k3gq5cail"; depends=[Biobase GWASTools oligoClasses]; }; - mCSEA = derive2 { name="mCSEA"; version="1.16.0"; sha256="10g46k9ryg183dhaakmbjnpqhx4a4q9r1fjf9gfnpaycspmh7hx8"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; - maCorrPlot = derive2 { name="maCorrPlot"; version="1.66.0"; sha256="018hc5sqp23cmfdr0k4dgx9rwl3f6f9fgab99h5hlg8rrqhy2abm"; depends=[lattice]; }; - maPredictDSC = derive2 { name="maPredictDSC"; version="1.34.0"; sha256="0rn3s0lpbrdkhbqsg94x4b2fwybrpfyys0ih2dkdscdc9h9dapyw"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; - maSigPro = derive2 { name="maSigPro"; version="1.68.0"; sha256="1l478qjx3cx6xc9j5gl3hv3dbrglrd2dgsifvpmw64y6a00zz09g"; depends=[Biobase MASS mclust venn]; }; - maanova = derive2 { name="maanova"; version="1.66.0"; sha256="0nh2wn8zyipm2sxxqlj0nnghybnxc2y77h031c3maab1c6kjmjiq"; depends=[Biobase]; }; - macat = derive2 { name="macat"; version="1.70.0"; sha256="1w3a0s5p93zhx8vrf0qmspisnm3gf0j1z8l38wgc86k0d9zjcbs8"; depends=[annotate Biobase]; }; - made4 = derive2 { name="made4"; version="1.70.0"; sha256="1wrv9d2mp799qzy1bsaj4w7wx12gdhfv9qvklz7z41vfz59d6bq5"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; - maftools = derive2 { name="maftools"; version="2.12.0"; sha256="1gqfi95v4fs64n4walij0g2kds3fbbwp6lih5yakmgf6kj8fpkk6"; depends=[data_table DNAcopy RColorBrewer Rhtslib survival zlibbioc]; }; - maigesPack = derive2 { name="maigesPack"; version="1.60.0"; sha256="1imqs7jr3hnib90dclwfxx5cagf0in8zd0hz3jqw5x2xyfq2mzbp"; depends=[convert graph limma marray]; }; - makecdfenv = derive2 { name="makecdfenv"; version="1.72.0"; sha256="03lqcrbyasqychzay8iflkdfqsbsncvaxmn3g3nwr9p7l726gsik"; depends=[affy affyio Biobase zlibbioc]; }; - mapscape = derive2 { name="mapscape"; version="1.20.0"; sha256="1x9446fakxmnpkzfk541kihc95y2ilnvq7v9icky4175s70492w4"; depends=[base64enc htmlwidgets jsonlite stringr]; }; - marr = derive2 { name="marr"; version="1.6.0"; sha256="1y7s30wxk75qk2w19irs77kkg7kghs247h6n4abxvnv3wq4ygwmd"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - marray = derive2 { name="marray"; version="1.74.0"; sha256="0awfz0akz3sylyw1jxhxgadv1rqdzvy9v11933yxkl9a8m9ngm8i"; depends=[limma]; }; - martini = derive2 { name="martini"; version="1.16.0"; sha256="043pl5r2ahnv6i7x1yd9pvs0v4xpajyxick1liivp4zrgxskpfs4"; depends=[igraph Matrix Rcpp RcppEigen snpStats]; }; - maser = derive2 { name="maser"; version="1.14.0"; sha256="0zl390lcahk9ipadi8jj25jf50dv6sxsmi54qj1nzq0q6qh0hyay"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; - maskBAD = derive2 { name="maskBAD"; version="1.40.0"; sha256="05aznwh5jmv4bd5s2gb6kjwz0zn7523qkpygdlrb5pxhh1vw1b5j"; depends=[affy gcrma]; }; - massiR = derive2 { name="massiR"; version="1.32.0"; sha256="179f1fd6xxaq7hwk6pixp3pbqmlx06mb7kin4ajwl5gch7kkr2qn"; depends=[Biobase cluster diptest gplots]; }; - matchBox = derive2 { name="matchBox"; version="1.38.0"; sha256="14jhbfvi6rwal693zbmb00pkzhpzmhib5ihr63m2y1ccmisnfqkp"; depends=[]; }; - matter = derive2 { name="matter"; version="1.22.0"; sha256="0pgi7vq1arrdhqyc34dkylbz6s4f1wx8j38ddk9yfi8m45nbhqig"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; - mbOmic = derive2 { name="mbOmic"; version="1.0.0"; sha256="13lb639g3cg5k6y215r40hxn2g5i4flz0cyxgs3nfn7wf3y2cfyi"; depends=[cluster clusterSim data_table doParallel igraph psych visNetwork WGCNA]; }; - mbkmeans = derive2 { name="mbkmeans"; version="1.12.0"; sha256="1f5krzlyqljz763vkp1a50danjn78xhn35s8qqdvzrmwyx0fzphg"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; - mdp = derive2 { name="mdp"; version="1.16.0"; sha256="1r7w7mzq6a31rjfnpbanvvk95nai189bggw4kj8y08k8kf44hsji"; depends=[ggplot2 gridExtra]; }; - mdqc = derive2 { name="mdqc"; version="1.58.0"; sha256="132spf0yhc864f8adsavyljcnmq28p1cpw8clb0rsi1v3hrj6kn5"; depends=[cluster MASS]; }; - megadepth = derive2 { name="megadepth"; version="1.6.0"; sha256="0qq82dmd3drr2bhn51bgbc6ml40klfmmhj6wdj72n9ya6n60lwy8"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; - memes = derive2 { name="memes"; version="1.4.1"; sha256="1s0mdfhvq52vg3494wgh4ar8vax5bc99gqsaism3d7vi4h9wnhzn"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; - meshes = derive2 { name="meshes"; version="1.22.0"; sha256="1affs7w2rwzkl2gh895ixwpvmp158acx1i4vcjg25gvak3wnwapq"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; - meshr = derive2 { name="meshr"; version="2.2.0"; sha256="1gaxjz5day6xipfh8dy0nxf7vxnvdy9b9hfdp83ysyhxszb36fdl"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; - messina = derive2 { name="messina"; version="1.32.0"; sha256="1avfj9xdx1mi7f1sdl9j1xf1jhj5cibkiwwy7aa1w7chz1mz8hr4"; depends=[foreach ggplot2 plyr Rcpp survival]; }; - metaCCA = derive2 { name="metaCCA"; version="1.24.0"; sha256="1shpb8p7rxf101k8vy4nd6fllgfm3jazv87h5qk5mhfcfrja0819"; depends=[]; }; - metaMS = derive2 { name="metaMS"; version="1.32.0"; sha256="00mdv3k3qndjznxixvnb7v764wz8c6zh2jzm0h948ra3ap345fga"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; - metaSeq = derive2 { name="metaSeq"; version="1.36.0"; sha256="0775xgvmcaqf6pgm8651pcnlkd3adwpdzac295g1xmcwfj3r7sav"; depends=[NOISeq Rcpp snow]; }; - metabCombiner = derive2 { name="metabCombiner"; version="1.6.0"; sha256="1vnh0bqfzknpflk0j5y9jxggmc3m4irxyfbkm9jf6k5a30fnmmxb"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; - metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.6.0"; sha256="0mg7wrg8qgv11w7179nrw5w7209qjqbirm9niz2ygw1pidg0slc8"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; - metabomxtr = derive2 { name="metabomxtr"; version="1.30.0"; sha256="0z02b91gd71b5ksfk2ql5jldicsqh66z2yvv5yyws98xl0qqrrxw"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; - metagene = derive2 { name="metagene"; version="2.28.1"; sha256="1r6kjwbwhksmk9kpvpmn9zwlfllznpam880ma4imsz6pgzfxsskw"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats purrr R6 Rsamtools rtracklayer stringr]; }; - metagene2 = derive2 { name="metagene2"; version="1.12.0"; sha256="1606i1kw8i4q1m07x2yax2mfmj9knzd7jiqgzq3fn792z1yj1bsb"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.38.0"; sha256="0v8h8ld4gzq0v90hfprw3v8j2hlac44wxyj2m6qmz0y5hml97k02"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; - metahdep = derive2 { name="metahdep"; version="1.54.0"; sha256="1y8pr873jy1ax8n8qp8kihagddk5j03pjwmxff03amnqrnxyphlv"; depends=[]; }; - metapod = derive2 { name="metapod"; version="1.4.0"; sha256="19g9c08alg4qqr710si465wlb5dy759m5d8wn91zwj24077dds7b"; depends=[Rcpp]; }; - metapone = derive2 { name="metapone"; version="1.2.0"; sha256="11q90c6qif030xffhfr8ii7vffbg2q2y6n2w8fj0x39yis6qcgf9"; depends=[BiocParallel fdrtool fgsea fields ggplot2 ggrepel markdown]; }; - metaseqR2 = derive2 { name="metaseqR2"; version="1.8.2"; sha256="1zrbn45r62nzb1rq8xlksl6dr1zlvy6zg3dgqg7ks9aqv5grd7w4"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; - metavizr = derive2 { name="metavizr"; version="1.20.0"; sha256="0sjz94a46a3frij3vx7dp4xhxn0snhrr219hg53v5ypnfbqyyxin"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; - methInheritSim = derive2 { name="methInheritSim"; version="1.18.0"; sha256="1g7wygaqhn1fsxaijzcil7inby25c1m85ph3xrkjn12m9lhxzzxv"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; - methimpute = derive2 { name="methimpute"; version="1.18.0"; sha256="1d197yf3hfnag6s2pr7vy69vmrh1v8bdxwfylb7v7xsjkhjb1nv7"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; - methrix = derive2 { name="methrix"; version="1.10.0"; sha256="0717pazv7yakj3b0c8p7rzb4iykyiv8vh02c4357qc3kwarkpncj"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; }; - methylCC = derive2 { name="methylCC"; version="1.10.0"; sha256="0sigx62cy47cmpirr6nqcdik5dxkn79j2xjap36jmipaa2i914s2"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; - methylGSA = derive2 { name="methylGSA"; version="1.14.0"; sha256="0lmzipk9mn3m0nv9fmfc5q53w7f1pz37cyj18n501p3p6ljqhz3r"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; - methylInheritance = derive2 { name="methylInheritance"; version="1.20.0"; sha256="0a0rgi396jghxpsq44ybn518r8qkz329kpnpfb0jggwc8ygg56id"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; - methylKit = derive2 { name="methylKit"; version="1.22.0"; sha256="00asjzv05avfg0rrkmfbdqd6xx8d18zi72n3b1kf9wj81z2d2a35"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; - methylMnM = derive2 { name="methylMnM"; version="1.34.0"; sha256="1mxkxs06j8mi44rqnzz52dnarhh1x120qqxwkdlggl8ll36zkhrm"; depends=[edgeR statmod]; }; - methylPipe = derive2 { name="methylPipe"; version="1.30.0"; sha256="15wssa2mp3rx4ccgnmq8bb4b7h0g6vccy2i18vc45v79gq3bn3if"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; - methylSig = derive2 { name="methylSig"; version="1.8.0"; sha256="1qmd2hkinr7d4dd026r3ah0k5hrdpv1zazr8vqvx7rvxmkzz55g5"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - methylclock = derive2 { name="methylclock"; version="1.2.1"; sha256="08a4yapgdryz410b8s42f1wiy1zzkk6xmvsqmbmb2gsxsfiv48a7"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr gridExtra impute methylclockData minfi PerformanceAnalytics planet preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; - methylscaper = derive2 { name="methylscaper"; version="1.4.0"; sha256="19vp4hp67qvjxhbkhhhsgxa91hq5p19qsk5rjmksd5xqvgs1g4gw"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; - methylumi = derive2 { name="methylumi"; version="2.42.0"; sha256="0klkinq55lfj1d4z8gkrv98849079x1l5gd15habw7jq9xxvhjww"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; - mfa = derive2 { name="mfa"; version="1.18.0"; sha256="0xwrwaldj78rmr1zyvz8mw9rxqdp8vr4s9k2776ijx7s71zklh8z"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; - mgsa = derive2 { name="mgsa"; version="1.44.0"; sha256="1g6chz14q0vpfr6x7pcv3icx3c50lppwcv231j1a3iirz30n8d6w"; depends=[gplots]; }; - miQC = derive2 { name="miQC"; version="1.4.0"; sha256="056sy6qk04gaqzcxvxpxskq7wzbgbfa8yclp2r0ry6i9qh7f8imm"; depends=[flexmix ggplot2 SingleCellExperiment]; }; - miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.20.0"; sha256="0z2rjf95maqalqbdw2v5vhwhj7fjaijp74rmmxfkciwrja25xq57"; depends=[]; }; - miRLAB = derive2 { name="miRLAB"; version="1.26.0"; sha256="0dhdzmv02vg0wj32bs0rqpax1k1m9vvyn31i95c40nbh245hfjyk"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; - miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.24.0"; sha256="10v192wykdgbjbdbg5jc4y8zkyknqi35zx0gb39nby2ss5sh01k8"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; - miRNApath = derive2 { name="miRNApath"; version="1.56.0"; sha256="0993zpv9zl31r3x6ifi44syw8w6f6rcwrambvhfy7f22bifz66cl"; depends=[]; }; - miRNAtap = derive2 { name="miRNAtap"; version="1.30.0"; sha256="171c1zvc8z2hdzfkdm19w4qbi2pqsis0pjqyca4w1fr3gkrx519n"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; - miRSM = derive2 { name="miRSM"; version="1.14.0"; sha256="0h13ig1mvciagyifzgi2paag2ypw5kwpjn7k2a1am6fgabywp5b5"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; - miRcomp = derive2 { name="miRcomp"; version="1.26.0"; sha256="1vf3q3132bn0qxs047yh7bi3cq5rfirmyhs2f4m05kiwc3ipmc3a"; depends=[Biobase KernSmooth miRcompData]; }; - miRmine = derive2 { name="miRmine"; version="1.18.0"; sha256="089r950x369z3a47jxcankvq0aqv6jkpjqkssfmzg5cp55hxzrhc"; depends=[SummarizedExperiment]; }; - miRspongeR = derive2 { name="miRspongeR"; version="2.0.0"; sha256="0ri5afvazrq1zq5f8ddma3qx34ifr4bd3858g14rq28fia9khl1s"; depends=[clusterProfiler corpcor doParallel DOSE foreach igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA SPONGE survival]; }; - mia = derive2 { name="mia"; version="1.4.0"; sha256="15pa9q6s9bq0xachfk122p7nz0bad438rfa0zx7zsm99kaygacmk"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; - miaSim = derive2 { name="miaSim"; version="1.2.0"; sha256="0dc6nqmnj4phqqvs04hzcrl4w0w80j7cbmhlzdxp01rszzzr1yzw"; depends=[deSolve gtools MatrixGenerics poweRlaw S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; - miaViz = derive2 { name="miaViz"; version="1.4.0"; sha256="1bdbvbh8mkl1gk10zf11b8wqwwr1ybbd6r7dpgh4y35ayscpvdqn"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; - microRNA = derive2 { name="microRNA"; version="1.54.0"; sha256="1bd38qxcd0lb44wgnns5jsn65b3mvgxfalfz7wpysv6sikmlagx4"; depends=[Biostrings]; }; - microbiome = derive2 { name="microbiome"; version="1.18.0"; sha256="1z9arkjp5xszlg07mzb4p163i74jfbd9p4gbwv5syivnpl040k12"; depends=[Biostrings compositions dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; - microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.10.0"; sha256="05lj8ihx8cpx2casxbpyn7n3zwia0bmj0lyn9prqial56s0zmsaj"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; - microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.6.1"; sha256="0sccij5f0h6gg3gi3qsirqc3v17qc6wv6rvh601rgn0zhbdf6hl7"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; - microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.2.2"; sha256="0bd5a92na9hk2hpmqphpdhn24pk1p2gk5nsbslp8yk5c4161qxmk"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics BiocParallel biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC pROC purrr rlang S4Vectors tibble tidyr tidytree vegan yaml]; }; - midasHLA = derive2 { name="midasHLA"; version="1.4.0"; sha256="1xvqrsp6rkcnr8fnjr9g62krwwshiy3xapxlmbi4bhm6605b0ccy"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; - miloR = derive2 { name="miloR"; version="1.4.0"; sha256="1jz9p3grnczx0bpdw6j64x21in8zgm3qy19hmm296har2rx9m5zs"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - mimager = derive2 { name="mimager"; version="1.20.0"; sha256="1iy1bghz3wqn80444h9aq81mz1pw7wcx0m6bjj33qxdzcr66jbgl"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; - mina = derive2 { name="mina"; version="1.4.0"; sha256="0csvsfld45cqcsnpprviggbb4lsqjsyz00iy02zmzi6kz2djhwil"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; - minet = derive2 { name="minet"; version="3.54.0"; sha256="0q6jw2jqkl9qynjpzaygz45c7dmx1l5y2d8s1illpcf87siawcam"; depends=[infotheo]; }; - minfi = derive2 { name="minfi"; version="1.42.0"; sha256="0255z7w5i5k01w8wn7jkb37h3q7m7vg0szqgk76h330yydnmkrq6"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; - mirIntegrator = derive2 { name="mirIntegrator"; version="1.26.0"; sha256="1qgz9l4bpkgvahdm2vi0s9amakxw4zhjndc5k8d598vmwa35zjvf"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; - mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.4.0"; sha256="10w0y3dflyyaaz8wk2p0pzv62pa2pq28aw0l5q8bvw8as0h6bpy1"; depends=[assertthat caTools corrplot data_table dplyr ggplot2 MASS pheatmap pscl purrr R_utils reshape2]; }; - missMethyl = derive2 { name="missMethyl"; version="1.30.0"; sha256="0ini4a6brxsmd1k73g7q671g0ddrbajz5gcgxk1dbny33fcixyl1"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; - missRows = derive2 { name="missRows"; version="1.16.0"; sha256="17hfm5jvdxb3hlv7hvq7m2a1s4bxzzxv1gakxk9nb26mcw01b29z"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; - mistyR = derive2 { name="mistyR"; version="1.4.0"; sha256="1b8ndp5wrzy37gspw15s8xv78nk493xwi9wvjav8k4m6cyspgr0q"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 purrr R_utils ranger readr ridge rlang rlist stringr tibble tidyr withr]; }; - mitch = derive2 { name="mitch"; version="1.8.0"; sha256="0wxgrfnih9ygpyznlr6c8sgpy8ca6k9a5jcniiwy1c43cxarvx3p"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; }; - mitoClone2 = derive2 { name="mitoClone2"; version="1.2.0"; sha256="1w5083f5g9dz3lwhfminz4l6yrn7zjysbwlib75n53grkhgwkivz"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; - mixOmics = derive2 { name="mixOmics"; version="6.20.0"; sha256="0fwc2w7frj0bjijzfckkxf7ipx1z13gw7907q4zr5qfl9mh127w7"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; - mnem = derive2 { name="mnem"; version="1.12.0"; sha256="04wc6za7vxq2sbspn69lszn6k83s7q0yfgns1052c2jqhfmxgp80"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; - moanin = derive2 { name="moanin"; version="1.4.0"; sha256="0k3k554ncm4j3zkz67dlzdvii9m6k117gryj7lk9wrbsv1a0y7if"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; - mogsa = derive2 { name="mogsa"; version="1.30.0"; sha256="1yxnkwf6f356nm999b2ng54zb4cdi94pxhpwzj3f3rnr31jawvlp"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; - monaLisa = derive2 { name="monaLisa"; version="1.2.0"; sha256="0rqqkry54cz7id87znc59d8x49z8cwckmx30nxr6razmyl5bqmx6"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; - monocle = derive2 { name="monocle"; version="2.24.1"; sha256="11g1wx0f1yzhg3x1aa3d5l7pqlzxj16s0gha21skxkgld8k2x8xn"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba leidenbase limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; - mosaics = derive2 { name="mosaics"; version="2.34.0"; sha256="196wz422a284akariq5iicknaqqcm50v63b57gsi2pzmv6qfmf5y"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; - mosbi = derive2 { name="mosbi"; version="1.2.0"; sha256="00l9kykr9n8ys3riw4pjqsdskf8klv9j62v0nr66z66646c1a7vp"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; - motifStack = derive2 { name="motifStack"; version="1.40.0"; sha256="0d2ihx73chczbv6f91n04qb372plrdv7k4qws8shyw1fmvb1rq0z"; depends=[ade4 Biostrings ggplot2 htmlwidgets TFBSTools XML]; }; - motifbreakR = derive2 { name="motifbreakR"; version="2.10.2"; sha256="0xmakbas2hhp0lknnfkdh73pm5z2dm4mrzixkx1sf69q7gq2g8gg"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; - motifcounter = derive2 { name="motifcounter"; version="1.20.0"; sha256="06yy1ngf703ba6m9vs2jk3w1bds1s8hd4nlr3xrxfj3h7gs9dlak"; depends=[Biostrings]; }; - motifmatchr = derive2 { name="motifmatchr"; version="1.18.0"; sha256="1ssn00mxwk23zr5na0vcmxvm69i68f0ga0wqlv1nk2isg0wpv878"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; - mpra = derive2 { name="mpra"; version="1.18.0"; sha256="0hbsaw39k7yryl1bf45kzsnwv479minydvxc6kd0sr9qsvlhn6dc"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; - msImpute = derive2 { name="msImpute"; version="1.6.0"; sha256="11sqb0sj3g224fnx1kkxy9j4r5ggnp09wm902dlgkgyqj7fywlnv"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; - msPurity = derive2 { name="msPurity"; version="1.22.0"; sha256="0ag1x4smva0zn377s29ff16xpwhcwb7c4yhhl1wx5fvgg9p4kn0i"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 magrittr mzR plyr Rcpp reshape2 RSQLite stringr]; }; - msa = derive2 { name="msa"; version="1.28.0"; sha256="0vlhpv4hh3m2wb8bfr0hn0xfycd6x80zyjf275swx46mssdqwzyp"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; - msgbsR = derive2 { name="msgbsR"; version="1.20.0"; sha256="00r3kfimcjy02bb0i8przj45rfkdv3ddaxfjnmi1bb6j5l5sp17b"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; - msmsEDA = derive2 { name="msmsEDA"; version="1.34.0"; sha256="0jnaq9ar4mnf3pfhka9hvk61p51ny9jws49xi8z29dq288b42b42"; depends=[gplots MASS MSnbase RColorBrewer]; }; - msmsTests = derive2 { name="msmsTests"; version="1.34.0"; sha256="1wzdz0p9wmr243xkmymx9fwskafkyxgmlip4sd1fy2s06px7r0xi"; depends=[edgeR msmsEDA MSnbase qvalue]; }; - msqrob2 = derive2 { name="msqrob2"; version="1.4.0"; sha256="0023mippnmmpz0r4f2h5r8g7z3yvhm6vfvkwp9ndsl1r1rpv801w"; depends=[BiocParallel codetools limma lme4 MASS Matrix purrr QFeatures SummarizedExperiment]; }; - multiClust = derive2 { name="multiClust"; version="1.26.0"; sha256="0dkj479id0kz8afmaskgn5dnfg26q47qf7gwm9qq3r9n51hbglsb"; depends=[amap cluster ctc dendextend mclust survival]; }; - multiGSEA = derive2 { name="multiGSEA"; version="1.6.0"; sha256="0nsab0ip3qnic5q15kmv42d4wf0vys5n4d539x0jq1i3mi3zpfbb"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metap rappdirs rlang]; }; - multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.14.0"; sha256="0mff46n168bxrg8y5dj38p2dfb0mhxf6z55fnmpfc2kahfa5bkk7"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; - multiMiR = derive2 { name="multiMiR"; version="1.18.0"; sha256="1wlr21v8brl20cphbvr5vcfy3ilamb7a1sd261i7lkdj4if8bxfx"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; - multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.20.0"; sha256="0cbz32ma935ci4aq83dq55ks66v7pz9rpaqfjvkd9gz3c5s88p16"; depends=[doParallel foreach SummarizedExperiment]; }; - multiSight = derive2 { name="multiSight"; version="1.4.0"; sha256="1nkx92kyyimgz2jm4dl2izir0z3qbf9fibgxr5r9j3l3zjwbbd08"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot ggnewscale golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; }; - multicrispr = derive2 { name="multicrispr"; version="1.6.0"; sha256="0smljmmwlkawbd4hdwgzvl25zynij4ssn4fjdhkgrmszsq79wscy"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; - multiscan = derive2 { name="multiscan"; version="1.56.0"; sha256="0wxpm0np4721nw2gz4db4a1wdi06pnnziyj0mwkwpsll7mgz337p"; depends=[Biobase]; }; - multtest = derive2 { name="multtest"; version="2.52.0"; sha256="037wcmwk1wvhjxgmlvnk289pkwishi1753ajkmy9x14xlmldix82"; depends=[Biobase BiocGenerics MASS survival]; }; - mumosa = derive2 { name="mumosa"; version="1.4.0"; sha256="1zrbajjfjq8mp6qq10xfrq2m2yrnda37s2aba32dwdk1gpkxx9g4"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; - muscat = derive2 { name="muscat"; version="1.10.1"; sha256="1j3zkhqgza92vdykb1yia1jjwsdqra6q9c0jk6p5p2x0778xqgfd"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; - muscle = derive2 { name="muscle"; version="3.38.0"; sha256="16qfnf02lmfk1cwwql5airkpv7c90lvpyjjrwicid55gqhajfzhx"; depends=[Biostrings]; }; - musicatk = derive2 { name="musicatk"; version="1.6.0"; sha256="1j3402ywcma83zxbhwlazr0s57c8b11xzg41qfxc6k2dngv3h06z"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap cowplot data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny shinyalert shinyBS shinybusy shinydashboard shinyjqui shinyjs sortable stringi stringr SummarizedExperiment TCGAbiolinks tibble tidyr topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation withr]; }; - mygene = derive2 { name="mygene"; version="1.32.0"; sha256="0j1cwz95hx2wl6mf6kycrw0xlsi4j6s7y4jjm87dq52dnwnh8svy"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; - myvariant = derive2 { name="myvariant"; version="1.26.0"; sha256="096zkpmllf58x3pz571h0y2v1klpw82xs6ffgg78hz3kayxbyqr9"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; - mzID = derive2 { name="mzID"; version="1.34.0"; sha256="1q1aqyya9nd494s7m3rdaf3kixipdrwbj825g40kdljwrg85y961"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; - mzR = derive2 { name="mzR"; version="2.30.0"; sha256="1dqa03hb42kbqfg15ksijdkyf9pr54gcl3in4mzjkld5sdi8ncds"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib]; }; - nanotatoR = derive2 { name="nanotatoR"; version="1.12.0"; sha256="13r462fn6mfqknvizfbsim9dic6zw2wznmdhzwfwiax4b1ccjkk0"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse VarfromPDB XML XML2R]; }; - ncGTW = derive2 { name="ncGTW"; version="1.10.0"; sha256="1xcwh6xd0jhiq40rvswzngddndmvday0c8rni0sq43y9ng901jnd"; depends=[BiocParallel Rcpp xcms]; }; - ncRNAtools = derive2 { name="ncRNAtools"; version="1.6.0"; sha256="10ajjvhaagvgjcjfjkgviwdrk4962gb35lknwpab9mzdvgkwjb95"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; - ncdfFlow = derive2 { name="ncdfFlow"; version="2.42.1"; sha256="0759xvkp22dnbhq5wpgvpk8p61w0d50r5jrbh9n7sj8sga4lvvv7"; depends=[BH Biobase BiocGenerics flowCore Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; - ndexr = derive2 { name="ndexr"; version="1.18.0"; sha256="0l6bfzkrd8n719fqll4v202dm19hgdn9l8n56l8bykfsa3sff0lj"; depends=[httr igraph jsonlite plyr RCX tidyr]; }; - nearBynding = derive2 { name="nearBynding"; version="1.6.0"; sha256="0gf0gm9aqxxhblhfjab61j0bmyh2lij9bcpk2jvb55gmdaqc1vxg"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - nempi = derive2 { name="nempi"; version="1.4.0"; sha256="1hl1znxwdhsixv1cxq04nzsj982hjhpd5jc3pl6xdcivr0jbb405"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; - netDx = derive2 { name="netDx"; version="1.8.0"; sha256="0v6760mghq6ynmzfll16gc2q7c4l7gqlxilx6np6aha2qcwgr4cl"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; - netOmics = derive2 { name="netOmics"; version="1.2.0"; sha256="11yjlp1siq80492sywpkwghcsnqmwvmx0rbw9wm58j61qdlywcb5"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; }; - netSmooth = derive2 { name="netSmooth"; version="1.16.0"; sha256="0jzid8svq21i5kbc3c908dqmf0i4mlsnfa4bq7avp9ynv195nc4q"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; - netZooR = derive2 { name="netZooR"; version="1.0.0"; sha256="03a1i508hm8i86nnlj1i4hz83fz1krp3qfbiyv2yhrdq3f5ra1yr"; depends=[AnnotationDbi assertthat Biobase data_table doParallel dplyr foreach ggdendro ggplot2 GO_db GOstats gplots igraph MASS Matrix matrixStats nnet org_Hs_eg_db pandaR penalized RCy3 reshape reshape2 reticulate STRINGdb tidyr vegan viridisLite yarn]; }; - netbiov = derive2 { name="netbiov"; version="1.30.0"; sha256="1c63ywyp7zcszrrkyx3q4xnkzij17km675825gcmfgk3h0g96lx7"; depends=[igraph]; }; - netboost = derive2 { name="netboost"; version="2.4.1"; sha256="11rayvp15ysk2fkpsw3w3ivkxfk8dznz6zdrnbmfhv1814mbfvk7"; depends=[colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; - netboxr = derive2 { name="netboxr"; version="1.7.1"; sha256="06pc0qw275r1ksj07hvkfvcvxl9dg539wja07j7lbqvnp6hzl0xd"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; }; - nethet = derive2 { name="nethet"; version="1.28.0"; sha256="1c6is3w1saw5i2akmxf6272qlbxpf40ayfh19jialmmqsdhik01z"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; - netprioR = derive2 { name="netprioR"; version="1.22.0"; sha256="0wbhcr0qkcsnakfpx49hkjhwbmrc9n76rbs75pc3da4z9wv89qg3"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; - netresponse = derive2 { name="netresponse"; version="1.56.1"; sha256="0vzvmbb01f4dqy6g9yvwl078zmrnvzgdx12d91k43cw289z3ykvz"; depends=[BiocStyle ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; - networkBMA = derive2 { name="networkBMA"; version="2.35.0"; sha256="0xa0b977apbr6p9kqk38582af635kp99csj32bsn2bf8pjsmd4d2"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; - ngsReports = derive2 { name="ngsReports"; version="1.12.4"; sha256="16nc7yl9gaxj7j3dggnd02jn157nndjgxpbvjwa78gxag1lp5fld"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 lifecycle lubridate pander plotly readr reshape2 rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; - nnNorm = derive2 { name="nnNorm"; version="2.60.0"; sha256="09xr73xpfzj0w9wx23bqzkcnxlvgc50lazbfpd5phl0ravsl5spl"; depends=[marray nnet]; }; - nnSVG = derive2 { name="nnSVG"; version="1.0.4"; sha256="033210n4i52kdm2qv6m3f6pkmb0ll7lwanwn2nz9kzig55mgmn23"; depends=[BiocParallel BRISC Matrix matrixStats SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - nondetects = derive2 { name="nondetects"; version="2.26.0"; sha256="1y31pzsihqmlhprdgl9xwspbfj2k9zgp15d905v6y9zjzjdxfdhf"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; - normalize450K = derive2 { name="normalize450K"; version="1.24.0"; sha256="03cmxljvcfmzkvsrzhc4si17g68fcb8877pzf6960cvbhv00d4ys"; depends=[Biobase illuminaio quadprog]; }; - normr = derive2 { name="normr"; version="1.22.0"; sha256="1v1x54k8kphq3xrnv5m2ya4viyg22msgviv6hg6qg8fb4hqp9ich"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; - npGSEA = derive2 { name="npGSEA"; version="1.32.0"; sha256="05l9dd4w013k9m6yckidal2q2b991nkir78543rzjh81x9kqz229"; depends=[Biobase BiocGenerics GSEABase]; }; - nuCpos = derive2 { name="nuCpos"; version="1.14.0"; sha256="1lx3d1iadhah35hc30wmmki8yxqqw5qs0h0h1wjd6qyg0hyxskq7"; depends=[]; }; - nucleR = derive2 { name="nucleR"; version="2.28.0"; sha256="1878hzdffsz4hsghk9y9m8bdqcy75z5hipj264dawvp89lm57sfg"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; - nucleoSim = derive2 { name="nucleoSim"; version="1.24.0"; sha256="0s81vjca93afz9ysjz16pkdsn7x206lr7mbj9lnrllffhy4n4n59"; depends=[IRanges S4Vectors]; }; - nullranges = derive2 { name="nullranges"; version="1.2.0"; sha256="00zx8xq8hz2pz3x6x5lmq78nvrzpzmkjwm364d9qswjvcxdgmcvb"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales speedglm]; }; - occugene = derive2 { name="occugene"; version="1.56.0"; sha256="1cbi3h0m48vdy1jd5zqmwvrxgc7dn9jxadg1drc3sfbba5y85bsh"; depends=[]; }; - odseq = derive2 { name="odseq"; version="1.24.0"; sha256="1j8fv35z3wlc6y5ms34fd0z1r7w9hkr6fzb5rxx2ylc6nfgcsymv"; depends=[kebabs mclust msa]; }; - oligo = derive2 { name="oligo"; version="1.60.0"; sha256="0y7j96rafm9b85sxq2483i73685i3j67lk33fn8nfcav6lmsv5vy"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; - oligoClasses = derive2 { name="oligoClasses"; version="1.58.0"; sha256="1m4x50gl1fm5waa531v7ml0q229q65qn9cgiwnvjg721fvra7mdk"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; - omicRexposome = derive2 { name="omicRexposome"; version="1.18.0"; sha256="0gpd1hqniz6m0q1r6ijbr9kj7j9k4lzxqw9r906hlrh3jkwdyw21"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; - omicade4 = derive2 { name="omicade4"; version="1.36.0"; sha256="1l7w3sczsimg640klq8navgdcwjj090wjqd40n4mw76pny2xj2lj"; depends=[ade4 Biobase made4]; }; - omicplotR = derive2 { name="omicplotR"; version="1.16.0"; sha256="0sqh8nympgrig01x4j302xsya10sbrpn75sjwy16srxxiagkrlzk"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; - omicsPrint = derive2 { name="omicsPrint"; version="1.16.0"; sha256="08gv2qzv7a1jsyqqm802w3awymnnyyy84ic56wzhcdimhqgs0an3"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; - omicsViewer = derive2 { name="omicsViewer"; version="1.0.1"; sha256="1dndhjwi7n0syp6dq84008df12f628pr0h880qvgfgzfy63g0vnz"; depends=[beeswarm Biobase curl DT fastmatch fgsea flatxml ggplot2 ggseqlogo htmlwidgets httr Matrix matrixStats networkD3 openxlsx plotly psych RColorBrewer reshape2 RSQLite S4Vectors shiny shinybusy shinycssloaders shinyjs shinythemes shinyWidgets stringr SummarizedExperiment survival survminer]; }; - ompBAM = derive2 { name="ompBAM"; version="1.0.0"; sha256="0pjkp6vhnnbdflgg15f9cvlx8cdmbd3y09d7i1dk421z28jlwzrs"; depends=[Rcpp zlibbioc]; }; - oncomix = derive2 { name="oncomix"; version="1.18.0"; sha256="0yj0p2vkph8qy1hhfv8nc15ac0z506xazzsmq6a7pvz5yqw7hxqc"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; - oneSENSE = derive2 { name="oneSENSE"; version="1.18.0"; sha256="189zhz5glffh0q368mj8z7q7kvdpx2yl7xvwz5q20ckqj3xyyf10"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; - onlineFDR = derive2 { name="onlineFDR"; version="2.4.0"; sha256="0l2sc6kzwg1y68b4hh8xq075kkb1iz6l5ns417z36hwzb5sl0jxr"; depends=[dplyr ggplot2 progress Rcpp RcppProgress tidyr]; }; - ontoProc = derive2 { name="ontoProc"; version="1.18.0"; sha256="01wc7yk44zkylkx1blh7a299696pvf2smya728v3f8axvk8n5hyp"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny]; }; - openCyto = derive2 { name="openCyto"; version="2.8.4"; sha256="0fa3hbbrjw458dhmxdjypcjgyxmphp9kdr3r62qqf803i4wsxfk0"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; - openPrimeR = derive2 { name="openPrimeR"; version="1.18.0"; sha256="1lxs08x6xw80rw6q15qda1668yil53pwcwcm1kryibjx78rng3mf"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; - openPrimeRui = derive2 { name="openPrimeRui"; version="1.18.0"; sha256="1gkqka5i3advring4ajhkad183j27lik605hhnww0fm8n7qmgz7l"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; - oposSOM = derive2 { name="oposSOM"; version="2.14.0"; sha256="0fglnzab8p2za8d3d3cpia2rai64jyra1yazkfk718bin6nx2bpg"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; - oppar = derive2 { name="oppar"; version="1.24.0"; sha256="0p5r98v5f969hllm0ywqfi67gaxlgxba506qvlq2rd870bv5bgmk"; depends=[Biobase GSEABase GSVA]; }; - oppti = derive2 { name="oppti"; version="1.10.0"; sha256="0rwgyq4qx4bgz1rl6z93yiadpslnj8v1aj84pdhjdd7gcn0xyc4g"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; - optimalFlow = derive2 { name="optimalFlow"; version="1.8.0"; sha256="0h6a1cv7gc9pbahn3jpxayxqn9gl9qdygvmppz0za4bmi7jsc03i"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; - orthogene = derive2 { name="orthogene"; version="1.2.1"; sha256="1ckzzqglidwb8kmmd93aq2fm8ip95ac3hrf7f8kq27v2z62ykmjk"; depends=[babelgene data_table DelayedArray DelayedMatrixStats dplyr ggplot2 ggpubr ggtree gprofiler2 grr homologene jsonlite Matrix patchwork repmis]; }; - pRoloc = derive2 { name="pRoloc"; version="1.36.0"; sha256="11nznxcw06v9z5l9zlkqqpqzb5iaabvfbww0d0y1blgzhf06mfpz"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; - pRolocGUI = derive2 { name="pRolocGUI"; version="2.6.0"; sha256="0j48nky1gl1jggpikq60zxcnd4l3ka7l7wwsg0mn3i99ak1x55xh"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; - packFinder = derive2 { name="packFinder"; version="1.8.0"; sha256="0swvwh8wx871yppzi5mail4hrm8cvfyic4yqnwr32sihipsr9sgq"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; - padma = derive2 { name="padma"; version="1.6.0"; sha256="1rp0l035dcqb3vr6rh2q8x9169abcv02g71a6gvbzrs6zipp1183"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - pageRank = derive2 { name="pageRank"; version="1.6.0"; sha256="0ad9c6zrfajlkw0d1xhk2b4lggaj37iw92n2lj9qmw9jcdbpqlnq"; depends=[GenomicRanges igraph motifmatchr]; }; - paircompviz = derive2 { name="paircompviz"; version="1.34.0"; sha256="00fqwm8f2aw8lif3hpf7lh68b1gyffi18c97q2y4nh97zf94da0i"; depends=[Rgraphviz]; }; - pairkat = derive2 { name="pairkat"; version="1.2.0"; sha256="05ci3mbbfri30xxhi7ssj1wc35qbl1q5aaybqvfk9s8l14ax0izy"; depends=[CompQuadForm data_table igraph KEGGREST magrittr SummarizedExperiment tibble]; }; - pandaR = derive2 { name="pandaR"; version="1.28.0"; sha256="1l0iz2pyw728vi6smc1gk1sxjczfgdfv805fdc8bby0qapl7v85r"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; - panelcn_mops = derive2 { name="panelcn.mops"; version="1.18.0"; sha256="1pi6xva3s7avcdayqhh5xyrv00dv2gkv4pwxp3f5k8biz2i5qn0x"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - panp = derive2 { name="panp"; version="1.66.0"; sha256="0bvl3jrsqvf0955mjzqn4nzj3anhhhhn6id57icsmjq15gviajzl"; depends=[affy Biobase]; }; - pareg = derive2 { name="pareg"; version="1.0.0"; sha256="1kzs349cbz81ba1jm7vjqypn1041l5p8qrg9r596b9d902hiqfjg"; depends=[DOSE dplyr furrr ggplot2 ggraph glue igraph keras magrittr Matrix matrixLaplacian nloptr progress proxy purrr reticulate rlang shadowtext stringr tensorflow tfprobability tibble tidygraph tidyr]; }; - parglms = derive2 { name="parglms"; version="1.28.0"; sha256="0h9bd3rv2cbn8rfv4d1c2ah0pp7bsiziyj7zwslgwa2ycqrarpqa"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; - parody = derive2 { name="parody"; version="1.54.0"; sha256="0g974q140byiniixgsq717vz66wrsfwhrv76w0c4by23kvmkyrz7"; depends=[]; }; - pathRender = derive2 { name="pathRender"; version="1.64.0"; sha256="07mad39y9l4c1mb66psi5d9vqd7lwkin3psrszqhl5kd6fi6z3in"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; - pathVar = derive2 { name="pathVar"; version="1.26.0"; sha256="1q7dryn1h98cfr03xc7bm84rc0xsdhpc1mizd169cyck0jj70siq"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; - pathifier = derive2 { name="pathifier"; version="1.34.0"; sha256="0aanvd9sgicnbl87wwfr7sdh6bjy6knhcx1x1d5g34pqbzkwfzwq"; depends=[princurve R_oo]; }; - pathview = derive2 { name="pathview"; version="1.36.1"; sha256="11g4zhy4qfq0gmy588334f7s2w1acs2dz9kimax5ya2b8jjibk71"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; - pathwayPCA = derive2 { name="pathwayPCA"; version="1.12.0"; sha256="13ny1z0i7zywpk8lk8qpbj2zpgznq3l4q1vyg1r0rc265p8c3031"; depends=[lars survival]; }; - paxtoolsr = derive2 { name="paxtoolsr"; version="1.30.0"; sha256="0kzszgk69078kg5v6blnr1bbhhin8rx62s40xx1abm6pm0k87kli"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; - pcaExplorer = derive2 { name="pcaExplorer"; version="2.22.0"; sha256="0xkafpi6y5n8hljdaj183hd5z4ik7lpbklg2cbx1hwfz4n4hh1bl"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; - pcaMethods = derive2 { name="pcaMethods"; version="1.88.0"; sha256="1087sl7y707zld7zpf3ly51gnmdp93vn90dwa5440v7qawvg2h9b"; depends=[Biobase BiocGenerics MASS Rcpp]; }; - pcxn = derive2 { name="pcxn"; version="2.18.0"; sha256="08w3b8ngbrv7nhc6ybmzwkahk89ixxq67f9zjwinajw3svfi7yw8"; depends=[pcxnData pheatmap]; }; - pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.60.0"; sha256="14lhkhkgslwls86p7y04k0vjg5yqd2js9j4hnvkn89zydv7r29r0"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - peakPantheR = derive2 { name="peakPantheR"; version="1.10.0"; sha256="0ais6q8vl16x9prf8xsairrhjaaq246zw5n90g2zmh0nnb6674hw"; depends=[bslib doParallel DT foreach ggplot2 gridExtra minpack_lm MSnbase mzR pracma scales shiny shinycssloaders stringr XML]; }; - peco = derive2 { name="peco"; version="1.8.0"; sha256="12mq87cyndl7zgwn155vbd8lh3yil9l6slmyjin971hlw53qvikn"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; - pengls = derive2 { name="pengls"; version="1.2.0"; sha256="0zk8f9yzxc1mnyyv1g2rfjlcc0hz2dgavjrlgfqajzss4m5dilqs"; depends=[BiocParallel glmnet nlme]; }; - pepStat = derive2 { name="pepStat"; version="1.30.0"; sha256="1fj32n61zxm7ls7qk0ncpmm1g2xpf60i0310axniyxlxcbyds0b3"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; - pepXMLTab = derive2 { name="pepXMLTab"; version="1.30.0"; sha256="11fnm35cbnwy9l09mci9846xcv2mxvknv9hb1bs1i8381q8ysvws"; depends=[XML]; }; - periodicDNA = derive2 { name="periodicDNA"; version="1.6.0"; sha256="0ak5i5pqhjyz99lhbiqxjymsars3pajfwd2snzlyc7xd1fjxg06s"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; - pgca = derive2 { name="pgca"; version="1.20.0"; sha256="1mrn054flab2v18za40fhfxn691g3gq93p1ciyxfakbyb89ryi5x"; depends=[]; }; - phantasus = derive2 { name="phantasus"; version="1.16.2"; sha256="0r860hs25higr4crq1jf0s9a8pzrxbswdmz2zyx5bx0p1b78m6si"; depends=[AnnotationDbi assertthat Biobase ccaPP curl data_table DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; - phemd = derive2 { name="phemd"; version="1.12.0"; sha256="0nn0qgb0rz4j2xsjq0wydjhg5pmf2ra67rm9fdm4m1izmzwa0nhs"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; - phenoTest = derive2 { name="phenoTest"; version="1.44.0"; sha256="0dm3h7ax83j3izcij7cdf8wg9cl4409vwnmzfbymf33y2l2z8csx"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; - phenopath = derive2 { name="phenopath"; version="1.20.0"; sha256="114v90my05q89bgyjgl2ix62h3l4xcy96j2fncmpa89l7zax9fr2"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; - philr = derive2 { name="philr"; version="1.22.0"; sha256="1mj6mzl74dbpdhc5laiax5h20i0rh9n2rkip7vgwr5qc26a16kcw"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; - phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.20.0"; sha256="0mcgxwg3igji0a3nwhjby10yy6p1hlh1pfcx973vi7fy3w5inm19"; depends=[matrixStats plyr]; }; - phyloseq = derive2 { name="phyloseq"; version="1.40.0"; sha256="0hcyv4ziyaw74mc9vf7bad3q9izi9p0whg3hspbs6w8b3hp34y2k"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; - piano = derive2 { name="piano"; version="2.12.1"; sha256="0my7pkd565mkx8b8v008yayh5a0wkp25hwy7fpslygs5ycmr872h"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; - pickgene = derive2 { name="pickgene"; version="1.68.0"; sha256="1zdiaw0n72sc98qz5fl5xq34s1sqjmp45p2m8m882cv17d81fdgm"; depends=[MASS]; }; - pipeComp = derive2 { name="pipeComp"; version="1.6.0"; sha256="0m3kp996x248jvcy3d2d8hfw53vzj24k1jkcdw02lcc8p0rcy0zm"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; - pipeFrame = derive2 { name="pipeFrame"; version="1.12.0"; sha256="13xxkk7ja7f7kzn5pxcikdczc5y8f42l4xx3qbw837jxl5sxk2fy"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; - pkgDepTools = derive2 { name="pkgDepTools"; version="1.62.0"; sha256="1fpdlvivarilkbd5zanqpss1irr3a1y10qqj2k8zmh3rxw6gd99g"; depends=[graph RBGL]; }; - planet = derive2 { name="planet"; version="1.4.0"; sha256="0gqcflfn3l4dia6bi9jbadmhhp1flh3fss8glnlqxwgh4znlgj2x"; depends=[dplyr magrittr tibble]; }; - plethy = derive2 { name="plethy"; version="1.34.0"; sha256="1lj31iizb042zxqr5hma25p0clwc5d034bdbrwcpsfi6gq50ca42"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; - plgem = derive2 { name="plgem"; version="1.68.0"; sha256="07zxflxcay17hxjw3wh5kfdwl2x8537csb18p1qzmyrkvscnja77"; depends=[Biobase MASS]; }; - plier = derive2 { name="plier"; version="1.66.0"; sha256="0zs053ih93klbdwz4gg8m5kizn9ifdccvgm21ddphv9jyn0sic4b"; depends=[affy Biobase]; }; - plotGrouper = derive2 { name="plotGrouper"; version="1.14.0"; sha256="1v8yjpavyz6gkm9wpv1ja3ifgdm25x7yw3rsb40py3bfz6wq50pr"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; - plotgardener = derive2 { name="plotgardener"; version="1.2.10"; sha256="1azl98gnr6019hzl8c6j3cs7wnq8wicwydxc7wga0882l4jaiv5c"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr]; }; - plyranges = derive2 { name="plyranges"; version="1.16.0"; sha256="16af5v9k40sc152bgywkhzxbwx3gyljmn4whx0idfr58q5lafk90"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; - pmm = derive2 { name="pmm"; version="1.28.0"; sha256="1s2b4n91chjsplcmk8zj1sc8fm834vq1rygj10fvap9cnacc53pr"; depends=[lme4]; }; - pmp = derive2 { name="pmp"; version="1.8.0"; sha256="12bfbcvsxvlrv4znb7sy5ysmqr3rgpf24axcd5clhbw4xxsasak9"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; - podkat = derive2 { name="podkat"; version="1.28.0"; sha256="1fv0xpir46hfm85lcp3r0wwwf95w3frxn869m41qqqd20l45dbv7"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; - pogos = derive2 { name="pogos"; version="1.16.0"; sha256="1yqz6zayjpgbjfv2b2xy1hrriyjp9p62sgz0m3wzc036ki6hdgj5"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; - polyester = derive2 { name="polyester"; version="1.32.0"; sha256="1l25aggq6yx00rcbqqmpn9w48lj28z1m4s52ngmd2yxvr1kfwz7y"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; - powerTCR = derive2 { name="powerTCR"; version="1.16.0"; sha256="0wdaxhhsr0zap3mmcfsky5qxka38q86qm3fwdpxq3dprq87i4gyi"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; - ppcseq = derive2 { name="ppcseq"; version="1.4.0"; sha256="0m5cw7xjzway21ys1ihyp6s1ni05hxzswhixzig5w375m4qq32zp"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; - ppiStats = derive2 { name="ppiStats"; version="1.62.0"; sha256="0w5gkfah2y50x4wj5fn8i6ycx1x013mn9w4bs8r2vfqabpws1a81"; depends=[Biobase Category graph lattice RColorBrewer]; }; - pqsfinder = derive2 { name="pqsfinder"; version="2.12.0"; sha256="1mzl1n5vag59m0i30p839dba400pl41kzqk6mqlysysrbhy55mq4"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; - pram = derive2 { name="pram"; version="1.12.0"; sha256="1shri7kc33wfliv6bjgcx9xxgblz6kg791r2zpbmj0mc1dwzvqz4"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - prebs = derive2 { name="prebs"; version="1.36.0"; sha256="0v72wxmv790bbwx5fblp90a3rxqg7g19ryv6xbi23753jd4l6290"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; - preciseTAD = derive2 { name="preciseTAD"; version="1.6.0"; sha256="0zj90y364yfdg6sws32b71n9wdjbw5rhygihcimnwszfhqkfm7hg"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; - preprocessCore = derive2 { name="preprocessCore"; version="1.58.0"; sha256="1sqpp00hhv6gypflrjw8qpqyqgdcp29m86gmi1di1574x8casdkf"; depends=[]; }; - primirTSS = derive2 { name="primirTSS"; version="1.14.0"; sha256="19m448jiww7z5jf54k625fqljh34nnaxrs9pz2by24kb1iwq9bml"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; - proActiv = derive2 { name="proActiv"; version="1.6.0"; sha256="1m3rcd6qffd27kdrac5zvriy04p22pky2ldb70069vlhykh979hm"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; }; - proBAMr = derive2 { name="proBAMr"; version="1.30.0"; sha256="06k52jjii9mmy6nyq49f42j8z15snhq58zjj35piyj9vb8x5nl3n"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; - proBatch = derive2 { name="proBatch"; version="1.11.0"; sha256="1296zlqpkf6pcdxn42sfb8sr8yml7fx97i6iw3ivq98fbgikrad6"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; }; - proDA = derive2 { name="proDA"; version="1.10.0"; sha256="13an4g1m671if0jvnxvcbvidlaycfyva6bipairjakzvisc3v7df"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; - proFIA = derive2 { name="proFIA"; version="1.22.0"; sha256="0cprrdb3mqx9vfqfhx64s0ix22piqy1g2vqjwzxsh5330rg9x4jd"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; - procoil = derive2 { name="procoil"; version="2.24.0"; sha256="1yw59sjljwa4minnlf8w2cbasyf0xyfm3y7r7nw2cl9pkil7q8lh"; depends=[Biostrings kebabs S4Vectors]; }; - profileScoreDist = derive2 { name="profileScoreDist"; version="1.24.0"; sha256="04kvrw09zacvl9cxycw691vhijmhm9whb56iw19jh9w6910bd8g6"; depends=[BiocGenerics Rcpp]; }; - profileplyr = derive2 { name="profileplyr"; version="1.12.0"; sha256="0i4nrq3n122hz6y6fxnx9crv4k9dk1q75b0f38lclblm897vxhnw"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - progeny = derive2 { name="progeny"; version="1.18.0"; sha256="1rhy2l2yf9ndxlvff8756s6n8qyi42nz7a75lgygj5aqqckkj21b"; depends=[Biobase decoupleR dplyr ggplot2 ggrepel gridExtra reshape2 tidyr]; }; - projectR = derive2 { name="projectR"; version="1.12.0"; sha256="06xnygqzs4pbdilrm482dxv700bwwy94fkcqgzg1y93bg2pc9jcx"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; - protGear = derive2 { name="protGear"; version="1.0.0"; sha256="19kzjlm7d9yc8zr38cda9c8ijrakiv795av59gvi2h6hkbawh3z1"; depends=[Biobase data_table dplyr factoextra FactoMineR flexdashboard genefilter GGally ggplot2 ggpubr gtools htmltools kableExtra Kendall knitr limma magrittr MASS pheatmap plotly plyr purrr readr remotes rlang rmarkdown shiny shinydashboard styler tibble tidyr vsn]; }; - proteinProfiles = derive2 { name="proteinProfiles"; version="1.36.0"; sha256="0d229pa4drqpmx8557rc9ic4hck6p0b4kjrvcql97zxbawd42p9l"; depends=[]; }; - psichomics = derive2 { name="psichomics"; version="1.22.1"; sha256="01dgp09219abcvy1kc8hwkpx40rqsyl5g2i5x99c31zsnm4bmhrg"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; - psygenet2r = derive2 { name="psygenet2r"; version="1.28.0"; sha256="1yak827sma4l90k7hvsknkiacbvz3q4rfbxc3v5m5hk0xdwh26fi"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; - ptairMS = derive2 { name="ptairMS"; version="1.4.1"; sha256="0pdsb98gf11hh93h9ml546s36vsn9x2vq2fkq3zgyj708prpp7s7"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; - pulsedSilac = derive2 { name="pulsedSilac"; version="1.9.1"; sha256="1zb8xzs9h4rcrnmsfvrwb1qixn3jbnzxdwqgdrb82hgmxabmajlb"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment UpSetR]; }; - puma = derive2 { name="puma"; version="3.38.0"; sha256="0nvyn5j3j5054ifwc9mngf37hq40qdhrhfih195qalpkj6il2b1b"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; - pvac = derive2 { name="pvac"; version="1.44.0"; sha256="0vmfnc5cb1xxbhjaxz8rdvdx2w3dg0i8jnc4i9wa67x6rb3g19ba"; depends=[affy Biobase]; }; - pvca = derive2 { name="pvca"; version="1.36.0"; sha256="1356hc5zvfhkn7xgnxs1qm6w0fadb1nqsclgc5mlr15ckf1pr8gr"; depends=[Biobase lme4 Matrix vsn]; }; - pwOmics = derive2 { name="pwOmics"; version="1.28.0"; sha256="0viy8k7dcx1cgq23mq2779d8hfn4wffq4xi483fjizihs11hr6yy"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; - pwrEWAS = derive2 { name="pwrEWAS"; version="1.10.0"; sha256="1xfb9sqz6r21qgdqfs2jzlgky9myzdcqpv4vavh2g33bbnqbkknf"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; - qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.14.0"; sha256="18ma0calaywm4jdlr2v1vzhr4xiswqih9r72ggj9h0vvwwc7gfjw"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; - qckitfastq = derive2 { name="qckitfastq"; version="1.12.0"; sha256="1xj882jm4fi7cy8lixzyliaxa617k7wx70bjkzwhd5k9hww28ld1"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; - qcmetrics = derive2 { name="qcmetrics"; version="1.34.0"; sha256="1xr2j7d7k8fi4bfvgzmi100zhln7a7jq0jw0vn0b1jjs5zwlcikc"; depends=[Biobase knitr pander S4Vectors xtable]; }; - qmtools = derive2 { name="qmtools"; version="1.0.0"; sha256="17absfbzih3jam158byykpywlphvzjp3f59dzkjzx7x0wfps4mlz"; depends=[ggplot2 heatmaply igraph MsCoreUtils patchwork rlang scales SummarizedExperiment VIM]; }; - qpcrNorm = derive2 { name="qpcrNorm"; version="1.54.0"; sha256="06k1ymzylfsrfbs9cz6m8snrl841fbrrklymfxyrqd20kgfw13xi"; depends=[affy Biobase limma]; }; - qpgraph = derive2 { name="qpgraph"; version="2.30.2"; sha256="095d3qbi7852islcr30h5s5pny0ci8k60isbczajnfrf79zgad15"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; - qrqc = derive2 { name="qrqc"; version="1.50.0"; sha256="0dv6x2g5xkncvzrh37mxlf6hin46qdbj0hrnm83fapw2jb5bfy05"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; }; - qsea = derive2 { name="qsea"; version="1.22.0"; sha256="0ir752k7is9ns6jxvdsxpjw6byxywl8kakvvfpya763rck014rw0"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; - qsmooth = derive2 { name="qsmooth"; version="1.12.0"; sha256="0fvmb4dd6hfh0m0zssisd3fgd2j93js45gqklpvldpcm76g0dnw7"; depends=[Hmisc SummarizedExperiment sva]; }; - qsvaR = derive2 { name="qsvaR"; version="1.0.0"; sha256="1gm2n5085jvz615lcd5qdpqlpk1wmrr395hgaixqgzxagwr5v6ll"; depends=[ggplot2 SummarizedExperiment sva]; }; - quantiseqr = derive2 { name="quantiseqr"; version="1.4.1"; sha256="0yvrgqnf3n5fb49sqcmi34hcvzbnkhndd5i9jq5haw23ns9czmva"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; - quantro = derive2 { name="quantro"; version="1.30.0"; sha256="1zfrz7lxyrbf0c8d277npzj1h4six9whkqplvcjmn3li0xj5qng3"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; - quantsmooth = derive2 { name="quantsmooth"; version="1.62.0"; sha256="027am11ilisdn82k0f62dj0csninfxph1bsv5ff71hsjd9wghars"; depends=[quantreg]; }; - qusage = derive2 { name="qusage"; version="2.30.0"; sha256="0ljch8y7985c0q9mfkl0sxdacwyqflszi34qm8gc9lrjf67p0q21"; depends=[Biobase emmeans fftw limma nlme]; }; - qvalue = derive2 { name="qvalue"; version="2.28.0"; sha256="0cvhm5cldcnnxwa293dig1pj9lvj2hnz9zh4gfr25sw0xlcjzmyw"; depends=[ggplot2 reshape2]; }; - r3Cseq = derive2 { name="r3Cseq"; version="1.42.0"; sha256="1dzckmciyx985zc23im5dp8jrirscdrcwyacsck8w68i37aasrl1"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; - rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.36.0"; sha256="05yh4zcqjwra301xala6b3wjx3i8dliifg1kydpy36gxm2qiy5l2"; depends=[data_table XML]; }; - rCGH = derive2 { name="rCGH"; version="1.26.0"; sha256="1a0dwqcs4mpwqqqxw07vphmvbqwh6989ifd7jkls0jcpn2zxsk9g"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rDGIdb = derive2 { name="rDGIdb"; version="1.22.0"; sha256="11zqkxvbha38riah0j25crg9lwmwp9017a37ap95bh65cvxr9870"; depends=[httr jsonlite]; }; - rGADEM = derive2 { name="rGADEM"; version="2.44.1"; sha256="052z9iavnmkaz9jzz7ycpb8z7qqq3s5k6a04icrwl00wff7zqa2q"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; - rGREAT = derive2 { name="rGREAT"; version="1.28.0"; sha256="0px72r8mjimf5mxfwb9qz46kqpgjw5gaqq41hy0212ymjd8whaky"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; - rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.2.0"; sha256="06fgw2sfnpbnaaa1clj4ahvx19pqkylyka62mdhh34sq9majxisq"; depends=[imager reticulate rGenomeTracksData]; }; - rRDP = derive2 { name="rRDP"; version="1.30.0"; sha256="091picbs0cmvn1a0pmgpxg5j2gxcdj24d1vm1gz6dch8x9sl2ly2"; depends=[Biostrings]; }; - rSWeeP = derive2 { name="rSWeeP"; version="1.8.0"; sha256="063assf7vhf62ygd58bwhixbglhjvjd9qg9vxgzid3yhjdpn2rry"; depends=[pracma]; }; - rScudo = derive2 { name="rScudo"; version="1.12.0"; sha256="08yn4biv5cadby0pvg1zhy14yc9y90z203hm7wv329x217ccm90m"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; - rTRM = derive2 { name="rTRM"; version="1.34.0"; sha256="17kgipd3nr9l20x5nak24zjfpfslcm8cbj7bhmq8ch9w2ysimpw9"; depends=[AnnotationDbi DBI igraph RSQLite]; }; - rTRMui = derive2 { name="rTRMui"; version="1.34.0"; sha256="1gzw30kcnrnmjx5pn7xr1kgkgwyyjl138nsiqly5xh7h9b1is0sm"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; - rWikiPathways = derive2 { name="rWikiPathways"; version="1.16.0"; sha256="05nxgjc119yhkckykjzribawjxlg95qy9pb7yq1m7rv2j44izmfk"; depends=[data_table httr RCurl rjson tidyr XML]; }; - rain = derive2 { name="rain"; version="1.30.0"; sha256="1fn62w0d86lc1iilmi11cwqg2sk7fkhg9asdxnglsyiq8hz512ci"; depends=[gmp multtest]; }; - rama = derive2 { name="rama"; version="1.70.0"; sha256="1l10yq28d3qswcbza9f9jk1vx2cqzqn7r1ixwkvhj87yiqz99rhc"; depends=[]; }; - ramr = derive2 { name="ramr"; version="1.4.0"; sha256="06davx5rkcgms5423aksrcg07y4gg9xsaabhzy6adf7058xbl6dn"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; - ramwas = derive2 { name="ramwas"; version="1.20.0"; sha256="1an7ppyhnxcg2px9ydc9x623wi8vwbhxdxvvsvlna383j402r1xn"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; - randPack = derive2 { name="randPack"; version="1.42.0"; sha256="1mn1hwdmcvsijf5dvxvgj0pyg12m1ca4b6n0myjk5pva6xykwvhg"; depends=[Biobase]; }; - randRotation = derive2 { name="randRotation"; version="1.8.0"; sha256="0s92pvy6vw3jd2brvgnjdh3wacy3m0702qrn6wv5scsrn2b1kwxn"; depends=[Rdpack]; }; - rawrr = derive2 { name="rawrr"; version="1.4.0"; sha256="0828fmxn0bz0s01fjpripc1jg5jsdnq5l8m4c9bfwx5xnvcgsml4"; depends=[]; }; - rbsurv = derive2 { name="rbsurv"; version="2.54.0"; sha256="0dvf7nvafap2k5f3ap38zp0m4c12ih1jzg05c2n3l0wivimyp10s"; depends=[Biobase survival]; }; - rcellminer = derive2 { name="rcellminer"; version="2.18.0"; sha256="0spjill74i15j6l0ckg9yvans07fsxvim5gpq7rfxv2zblfvhaqb"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; - rebook = derive2 { name="rebook"; version="1.6.0"; sha256="02bg0gmxlcg3wj628wda41q58qjb3swqnf67nyyczjv17f4cpd8j"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; - receptLoss = derive2 { name="receptLoss"; version="1.8.0"; sha256="0lymq3im87k8qv1f1aga08y45zssnb4f3z3hjzmk1ndzfkqb7ds2"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; - reconsi = derive2 { name="reconsi"; version="1.8.0"; sha256="0vpx9a9bwwnsgaxazmdggqvw1ap34xj30rshkq0imwfw8s1hagsq"; depends=[ggplot2 ks Matrix matrixStats phyloseq reshape2]; }; - recount = derive2 { name="recount"; version="1.22.0"; sha256="1mipj8nrihn7gmxn81l9bxv0rbr9zly7s3vfrbzimvg56iq8wrly"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; - recount3 = derive2 { name="recount3"; version="1.6.0"; sha256="0322vplaz77dmvkb7f2ybfgm5bidfq97zrprhvyn28zw2qllr8vg"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; - recountmethylation = derive2 { name="recountmethylation"; version="1.6.1"; sha256="1k582mnq0vdjsz1jyb7h45p6klz9lc35law4x6ydjiv6z0wld55i"; depends=[BiocFileCache HDF5Array IlluminaHumanMethylation450kmanifest minfi R_utils RCurl rhdf5 S4Vectors]; }; - recoup = derive2 { name="recoup"; version="1.24.0"; sha256="1qrlhfrg991x0w5p4jlyra6wdvnqljiicckw0iqzybwp5xha8wkp"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; - regionReport = derive2 { name="regionReport"; version="1.30.0"; sha256="1qqii65xvmj7fgsx45n6szpr0l3z6q2c9s76mx4977wq5rhx8w09"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; - regioneR = derive2 { name="regioneR"; version="1.28.0"; sha256="11whi2v211xiz9s7cjl14d8vavlry2fmhvx12rma25wkjmhrpa3f"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; - regsplice = derive2 { name="regsplice"; version="1.22.0"; sha256="0lfgihf3v2ipw13nshwk6nzqv8qajry45zi30qhibpjdi6d3fsjd"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; - regutools = derive2 { name="regutools"; version="1.8.0"; sha256="1r8qxl5md44vvywfvfpkqg5jqb8zkw7hwdh2qpii20jxfd8nf77c"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; - restfulSE = derive2 { name="restfulSE"; version="1.18.0"; sha256="09alrj7q373w01vylnymna8hjsgs5gg9ngadglasncnk3yswjg3d"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; - rexposome = derive2 { name="rexposome"; version="1.18.2"; sha256="07vmprnv5rg42ddq3bwh3d9m488rnfsn82wpkd3l5lx4mlzp81g5"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; - rfPred = derive2 { name="rfPred"; version="1.34.2"; sha256="1ccicwvsfb0b4cmiykswmrhjzpycbfwvfpwz3n23yq594i7658v7"; depends=[data_table GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - rfaRm = derive2 { name="rfaRm"; version="1.8.0"; sha256="1brzplaw5nrwmayfjdqbwyd6xqq2h8421njpi63w6njjc41j9mhh"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; - rgoslin = derive2 { name="rgoslin"; version="1.0.99"; sha256="01gkgpqz5xb785par8xrx8mf8icbazxcskn9x2ailk5laaxd73sp"; depends=[dplyr Rcpp]; }; - rgsepd = derive2 { name="rgsepd"; version="1.28.0"; sha256="08b11x5qhkq5q17mbr4a2q5r6hz8rrd2xgssclm0flwp2czvnldx"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots org_Hs_eg_db SummarizedExperiment]; }; - rhdf5 = derive2 { name="rhdf5"; version="2.40.0"; sha256="00cp90mnb8p83jiflm6x4x0qf4p7gvgh47jk9jry6j3qyvfqaiff"; depends=[rhdf5filters Rhdf5lib]; }; - rhdf5client = derive2 { name="rhdf5client"; version="1.18.0"; sha256="1mxbpnyqhzvxqc34fyd31pai242ivzs0l28z2zssj8ja463fif9f"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; - rhdf5filters = derive2 { name="rhdf5filters"; version="1.8.0"; sha256="1ipg0v8nqz1imj63scqmpiswcxbl4ankg3knfq4p06ic6ypbbmvs"; depends=[Rhdf5lib]; }; - riboSeqR = derive2 { name="riboSeqR"; version="1.30.0"; sha256="1zs3y0icsqrndjp9wwqz3jxysvyc9pch45y49j6g9b5b2l44ma26"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; - ribor = derive2 { name="ribor"; version="1.8.0"; sha256="1jwzxcn2civ5g2wcdzi8a10lc0y96b7xpgdb2z3yq4s9sipmbw0j"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; - ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.8.0"; sha256="1f57r81g1gvfs84si4mz8r7058ga525hwdf71991z58hiyxbr7xd"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; - rifi = derive2 { name="rifi"; version="1.0.0"; sha256="15rqmlx3cnl9n8y821v42ganfyazqg85jd757mwrkmvi4xwnbmpw"; depends=[car cowplot doMC dplyr egg foreach ggplot2 nls2 nnet rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble]; }; - rmelting = derive2 { name="rmelting"; version="1.12.0"; sha256="1ag2cr4mlb824la0yywjrjkjsnxxmjp5svg2jv4017syl1l5dj2x"; depends=[Rdpack rJava]; }; - rmspc = derive2 { name="rmspc"; version="1.2.0"; sha256="1hj93l3l4maigqd9b4vhsa24x3fjqgqw0d81gm6rjv09pyn4zclh"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; - rnaEditr = derive2 { name="rnaEditr"; version="1.6.0"; sha256="1js6a0y5hmkilsq1vgnkjk798z6dnz0acphgfq40p7i6182w1bx8"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; - rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.26.0"; sha256="1gpdlv980nid6nsjg1prahdxwp1a8ij00xgzf08ir4ywpvy61ilz"; depends=[RColorBrewer]; }; - roar = derive2 { name="roar"; version="1.32.0"; sha256="0zq1praf5h9294cvmrb06l3chx8v40xw2sfvhlnh1516x9sjkwfc"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; - rols = derive2 { name="rols"; version="2.24.4"; sha256="1hgd4zl8r3xxl5jc8yqyxdqsqpvn9dkmkf79ndqzldq8hmgrpdn9"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; - ropls = derive2 { name="ropls"; version="1.28.2"; sha256="07gpx15r8c3wljiwxnff2zp7wxbhzz9r7njk8zg8hpy2q5qm3i6c"; depends=[Biobase MultiAssayExperiment MultiDataSet SummarizedExperiment]; }; - rprimer = derive2 { name="rprimer"; version="1.0.0"; sha256="040fy6zjvjjgz9syczvy8dpv02jnl3pv8vb75n40622z0c2hl1nx"; depends=[Biostrings bslib DT ggplot2 IRanges mathjaxr patchwork reshape2 S4Vectors shiny shinycssloaders shinyFeedback]; }; - rpx = derive2 { name="rpx"; version="2.4.1"; sha256="169yyyjvr46kis18yxlsznbdb5mdxnlxi6l9nrq5z49wnwx69vav"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; - rqt = derive2 { name="rqt"; version="1.22.0"; sha256="0039sk0dx4d7fqc9yl0grwlv5k18sv08piqyc3fyp66302p38wrj"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; - rqubic = derive2 { name="rqubic"; version="1.42.0"; sha256="108mw7xx04lgkj38k017mw7na1jglsbw0rx1ixb1d7hcgaqjcs63"; depends=[biclust Biobase BiocGenerics]; }; - rrvgo = derive2 { name="rrvgo"; version="1.8.0"; sha256="1r90q18nhmzh45djbi1i5x3bcyzbybkp9d5j8i8yqxphs29sr5vx"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap wordcloud]; }; - rsbml = derive2 { name="rsbml"; version="2.54.0"; sha256="1v11pspkml6xdsacgwxw8r4qdhbnn2h2sqgpm9aidaq9p2085b0v"; depends=[BiocGenerics graph]; }; - rsemmed = derive2 { name="rsemmed"; version="1.6.0"; sha256="0dw607kxcwv5dig5y3gja5916bpjki3bkphc7jxs79y9sl22zg4p"; depends=[dplyr igraph magrittr stringr]; }; - rtracklayer = derive2 { name="rtracklayer"; version="1.56.1"; sha256="10qy9s6253mgj871qfqn03i8yw10mz7id4cxfyf67qxczz2xmjls"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; - runibic = derive2 { name="runibic"; version="1.18.0"; sha256="04a12w2hnybw5h27b7szd4v4r4p3z359xkrpqpqp9hmvbrx6apa6"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; - sRACIPE = derive2 { name="sRACIPE"; version="1.12.0"; sha256="0q749j2pqhnmlx8d6vak3ig4ggqqwv74sfapfysbfg4n1v6cpkhp"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; - sSNAPPY = derive2 { name="sSNAPPY"; version="1.0.2"; sha256="0in95n2nwqg63i0a8zi8hh0gp3m78qxrf4qp94xnxihiry8h1dam"; depends=[BiocParallel dplyr edgeR ggplot2 ggraph graphite igraph magrittr org_Hs_eg_db plyr purrr Rcpp RcppArmadillo reshape2 rlang SummarizedExperiment tibble]; }; - sSeq = derive2 { name="sSeq"; version="1.34.0"; sha256="0cc1kz4fqf87xiq00vli8fcp4lix723vsa9ax4g55l5lqxp3k8pv"; depends=[caTools RColorBrewer]; }; - safe = derive2 { name="safe"; version="3.36.0"; sha256="19hxp2zg48dmw1j5jsp2i9n6ccw4613i5bhi5wg6kld4wy8k496v"; depends=[AnnotationDbi Biobase SparseM]; }; - sagenhaft = derive2 { name="sagenhaft"; version="1.66.0"; sha256="0czbjc83df4xgavkqf4qvypcy0wzlzpdysjmyd189jqinagifzjy"; depends=[SparseM]; }; - sampleClassifier = derive2 { name="sampleClassifier"; version="1.20.0"; sha256="1gx76wcln8nxfm4h9klndi7rpzqpcci4h0fxqqhpsd0x19yw6rz2"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; - sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.6.1"; sha256="0qp36w1mfwj0kzx055sc3gfyi0b86zahlsjvdiiclpwxh7wizkc4"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; - sangerseqR = derive2 { name="sangerseqR"; version="1.32.0"; sha256="12rh6y38j66l21dlb1199imp4jwkpv19l306lj7qi7prcfwzhmmy"; depends=[Biostrings shiny]; }; - sarks = derive2 { name="sarks"; version="1.8.0"; sha256="1da5vxbf7r2yla1l1m5gcbqbka33c2ry7gwnmjixr6xlv9vs4209"; depends=[binom Biostrings cluster IRanges rJava]; }; - satuRn = derive2 { name="satuRn"; version="1.4.2"; sha256="1iyym6hakzwd6vcgmkgvgk593ikbjzcwh16r2j9zb2z4bf7y9wwz"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; - savR = derive2 { name="savR"; version="1.34.0"; sha256="04zlf3lyr6vnpj80m6fd2is2f7302sxwih8nzzjnc4ss972jid2k"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; - scAlign = derive2 { name="scAlign"; version="1.9.0"; sha256="0g209c1m06wn66n4zm0gyy1pg41y39d9a14dlpahni7f5zs0zmvd"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; }; - scAnnotatR = derive2 { name="scAnnotatR"; version="1.2.0"; sha256="067q57kabhqd1z8l3d91fw74aaw89nb48gm6fll4hv00nqza3n5b"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; - scBFA = derive2 { name="scBFA"; version="1.10.0"; sha256="1w9jy37626ap1lfg7lg672nmbwq8w277mdk7b8xwif4hrjdzkl2f"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; - scCB2 = derive2 { name="scCB2"; version="1.6.0"; sha256="0mlkm43piaw2krbh7sh7q26lzj0zvwnwhiw37i59va0kp1zg43h5"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; - scClassify = derive2 { name="scClassify"; version="1.8.0"; sha256="0c4nrgwr7mzb888g27ak0gfz6hvm02n6y0y37z3c7xch71l0lqx0"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; - scDD = derive2 { name="scDD"; version="1.20.0"; sha256="0bjww338z5qf2g97kbh85h9kpagjr59ff9f4alm33h16xz5mb7k0"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; - scDataviz = derive2 { name="scDataviz"; version="1.6.0"; sha256="0h7jb0pwff7vq5yarab1c242g1gx21y6h6a8pj7v9yi0i62j3p6n"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; - scDblFinder = derive2 { name="scDblFinder"; version="1.10.0"; sha256="0y14dvdm16b3bvlrnz03adfylm1kj6jrp2fwciyldij2lfal90y0"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray GenomeInfoDb GenomicRanges igraph IRanges MASS Matrix Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; - scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.16.0"; sha256="0nnw9di62r68ih25l11755aikgh2p577dnla1yb0q9gdxcvbyxai"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; - scGPS = derive2 { name="scGPS"; version="1.10.0"; sha256="0z5my7x2yigl024nl0vx1261amf66q7vdgpam2wxqrsvw4f7ylvz"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; - scHOT = derive2 { name="scHOT"; version="1.8.0"; sha256="05qkq5bg351rpx01q1c1hs7y1zygp6m6r7javia67j8r5w7iir3p"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scMAGeCK = derive2 { name="scMAGeCK"; version="1.8.0"; sha256="0qmqn2w16wzgyrbfgh16xaw2kccm6nhdib9nva6w6mg29xa5ifkb"; depends=[ggplot2 Seurat]; }; - scMerge = derive2 { name="scMerge"; version="1.12.0"; sha256="0p55zp02zkdn7g6hdv7ilv7h4ii4988gkd6kf2naq83xs201m2k3"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr igraph M3Drop pdist proxy ruv S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scPCA = derive2 { name="scPCA"; version="1.10.0"; sha256="1ia5z1qf2jvilamkw3vgxshw14bzl4xk19s1bm9f4p08ghvx6px0"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; - scPipe = derive2 { name="scPipe"; version="1.18.0"; sha256="13wam3qbp9c8qgsp7hm7jq7q0a1ala6mw2xnp3nfbyz39aiwbix9"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hash magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib rlang robustbase rtracklayer S4Vectors scales scater SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; - scReClassify = derive2 { name="scReClassify"; version="1.2.0"; sha256="1afwxnvn17a5awcggifas7zaiw2r556l9iq1yl4kq06s73c1dfws"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; - scRecover = derive2 { name="scRecover"; version="1.12.0"; sha256="0p3j54ii9assvhpyy8x8zwibv56h7mf4clvahgp0shp0qg4x7zjv"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl rsvd SAVER]; }; - scRepertoire = derive2 { name="scRepertoire"; version="1.6.0"; sha256="0an485i5myfiv2zzwd3ql7ckawid894md3k2603mz2yz6qfsl8yj"; depends=[doParallel dplyr ggalluvial ggplot2 igraph plyr powerTCR reshape2 rlang SeuratObject stringdist stringr SummarizedExperiment vegan]; }; - scShapes = derive2 { name="scShapes"; version="1.2.0"; sha256="1ammb3a7ddys5zl2maggx3xqvdycy9dn9fl4kffrnqv4abfkvs9c"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; - scTGIF = derive2 { name="scTGIF"; version="1.10.0"; sha256="0vmr6fginvs1zdzzqmvw8yz25s3w58fwb9ifk8rca922af4m72jx"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; - scTHI = derive2 { name="scTHI"; version="1.8.0"; sha256="1izl8fk4p1ihxb42d4vi5pnxwi2v2j1630sbw70yajxav6i7riav"; depends=[BiocParallel Rtsne]; }; - scTensor = derive2 { name="scTensor"; version="2.6.0"; sha256="0g3qjxq48aq1kx3b7ma1faxyqvz1qxphvin5byhbird9hn36fljw"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; - scTreeViz = derive2 { name="scTreeViz"; version="1.2.0"; sha256="005pin0wvq4vws436jqjnpxrgqy0c5pbfg1g3j6mwfpn970frawp"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; - scanMiR = derive2 { name="scanMiR"; version="1.2.0"; sha256="177v72kgzkh2mvbj1sz2c833w51dgknx23h04awi5kh1gxfbhshk"; depends=[BiocParallel Biostrings cowplot data_table GenomeInfoDb GenomicRanges ggplot2 ggseqlogo IRanges S4Vectors stringi]; }; - scanMiRApp = derive2 { name="scanMiRApp"; version="1.2.0"; sha256="1m24vq9cq8n912hx6l0q2miwz8ln235j74514lf97jc9srm60scm"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard shinyjqui waiter]; }; - scater = derive2 { name="scater"; version="1.24.0"; sha256="0dqirggw7my5nq4ln9q0ya18ciqplkz9gx318ffias9ag3yii5rw"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ggbeeswarm ggplot2 ggrepel gridExtra Matrix RColorBrewer RcppML rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment viridis]; }; - scatterHatch = derive2 { name="scatterHatch"; version="1.2.0"; sha256="0a35xbd9ziph7h0dc6qc8816frkjqiawxwdyiac80s0r7r8x8mpx"; depends=[ggplot2 plyr spatstat_geom]; }; - sccomp = derive2 { name="sccomp"; version="1.0.0"; sha256="0acch9aa6w5lqkcvjcpzmaii65r1zb0hssndmjbbwn3zhm8ryirc"; depends=[BH boot dplyr forcats ggplot2 ggrepel lifecycle magrittr patchwork purrr Rcpp RcppEigen RcppParallel readr rlang rstan rstantools scales SeuratObject SingleCellExperiment StanHeaders stringr tibble tidyr tidyselect]; }; - scde = derive2 { name="scde"; version="2.24.0"; sha256="074rhfxv80hg4sfl4ksyqz6wz108zwp5bfi602p81i0zfprvkg3g"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; - scds = derive2 { name="scds"; version="1.12.0"; sha256="0zmqhsfdx60g1caxbf4vh356wf06v7fgfv7lng5y13vqlf5d875h"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; - schex = derive2 { name="schex"; version="1.10.0"; sha256="0kv0sagxkdqj5jd58hj7w7v0swrvnd162wqg31zb32iwxb8y012w"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; - scmap = derive2 { name="scmap"; version="1.18.0"; sha256="0pfwaa9pgml11b84rpf7afdkmg8kxb4srgpc56571vaz388xrv7l"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scmeth = derive2 { name="scmeth"; version="1.16.0"; sha256="15v1f641zdk70l5ss08kgvvq5h7b213f6zc5bg8jakqx2cj99xx9"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; - scone = derive2 { name="scone"; version="1.20.0"; sha256="05id34n6min03ha1chg5mrvx399qm2mby9kxkaz5w8fbidp97851"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; - scoreInvHap = derive2 { name="scoreInvHap"; version="1.18.0"; sha256="10ipfhmp93jjw5ijqiv34vkl79i0wmc9mwwrz2j641qlbkyxziaq"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; - scp = derive2 { name="scp"; version="1.6.0"; sha256="09gjq6n7rp4wngfq1yplcrkjrc7yw9w6rg7d2jr6lfj1x74p8syn"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scran = derive2 { name="scran"; version="1.24.1"; sha256="1a6vlq8i5gh7zxm6igmy75187pkx42z28qjag50m49xy5valw3ni"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; - scruff = derive2 { name="scruff"; version="1.14.0"; sha256="0y5p27ih1v4qz47i83zvwwk1d4qkw6i9hwkfpdma3fw87ffxdy0q"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; - scry = derive2 { name="scry"; version="1.8.0"; sha256="16mj21r91jy8ircdz8rfrdli9gjy0hrx90kf6ghs305d3d4dl193"; depends=[BiocSingular DelayedArray glmpca HDF5Array Matrix SingleCellExperiment SummarizedExperiment]; }; - scuttle = derive2 { name="scuttle"; version="1.6.3"; sha256="1w1jy5fqkp2d03lp84d49fsksnl0pcg0wgqyd49d5k1mipdw4671"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; - sechm = derive2 { name="sechm"; version="1.4.1"; sha256="1rimldsflmaa0ljrhi4am91hvkx6k8xvx5b0q3yl5ndblv2i6rvc"; depends=[circlize ComplexHeatmap matrixStats randomcoloR S4Vectors seriation SummarizedExperiment]; }; - segmentSeq = derive2 { name="segmentSeq"; version="2.30.0"; sha256="16ijs06ccm36z634qyrs3pjcnv0ssdzbvd4r76n55qq0mb10fgcq"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; - segmenter = derive2 { name="segmenter"; version="1.2.0"; sha256="1q3dx6j3d85f94ki67lga81d7nk0swy5y8ip3fab186i3amdlwjk"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - selectKSigs = derive2 { name="selectKSigs"; version="1.8.0"; sha256="00wbbakdd5jggd1wrv7cra1mrzs6r5jg21b760ym056wcmqggn09"; depends=[gtools HiLDA magrittr Rcpp]; }; - semisup = derive2 { name="semisup"; version="1.20.0"; sha256="0676sb39kz3aw70s87snj38kcdc3dhxq4i9wlbmafj4qxrly0l01"; depends=[VGAM]; }; - seq2pathway = derive2 { name="seq2pathway"; version="1.28.0"; sha256="0258fck970ryg3k5ilp5nhxpr3q6hgj3rgjnbxcmvmyclp3bfn8f"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqArchR = derive2 { name="seqArchR"; version="1.0.0"; sha256="1qivaakafyr080a1r544hfkn109y6ahjpjprkr5qjcb89q5yi0pn"; depends=[BiocParallel Biostrings cli cluster cvTools fpc ggplot2 ggseqlogo MASS Matrix matrixStats prettyunits reshape2 reticulate]; }; - seqCAT = derive2 { name="seqCAT"; version="1.18.0"; sha256="0fjx1rl4jm2jil126iy594la13ai8yf4j2axyxhhs69v5wss2d8s"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; - seqCNA = derive2 { name="seqCNA"; version="1.42.0"; sha256="0jkg85ymhz0m7s910x9fp0jxq054j972ljzhvxah9b3y4q4nmxi1"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; - seqLogo = derive2 { name="seqLogo"; version="1.62.0"; sha256="1lk3238m17acmd6lgjjbpscyxw8fm63wv34kbbr478wcih1wbwxr"; depends=[]; }; - seqPattern = derive2 { name="seqPattern"; version="1.28.0"; sha256="0nrrlr1nl9zxmp88qq8jn7wgmda6jh0xvp4nph94w4nwjsyb7xqn"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; - seqTools = derive2 { name="seqTools"; version="1.30.0"; sha256="0cbikjgg6b5mpr8p8d3mfnyzz917qcvc3bsn3z2c3qq5kllp0qmd"; depends=[zlibbioc]; }; - seqbias = derive2 { name="seqbias"; version="1.44.0"; sha256="085nq6pf0bdn17wsbr5jnyy512v7rf67xff9rp5wz47mcifbv6rg"; depends=[Biostrings GenomicRanges Rhtslib]; }; - seqcombo = derive2 { name="seqcombo"; version="1.18.0"; sha256="1y8pv1zl0vv5ng9nl0rgsgig6k6n6v9jhmax7wgrplz056x1ha8p"; depends=[ggplot2 igraph yulab_utils]; }; - seqsetvis = derive2 { name="seqsetvis"; version="1.16.0"; sha256="0yzr1xcyhmziajj8c0v6gxsy5hz01i2ld0m4dvgx51f91gdv4q3p"; depends=[cowplot data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; - sesame = derive2 { name="sesame"; version="1.14.2"; sha256="1lpx2w21993i7jzwphf4hwl3d1da9qq6wcn8nr6rglfc23h0cj0i"; depends=[BiocFileCache BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore readr reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; - sevenC = derive2 { name="sevenC"; version="1.16.0"; sha256="0gv319qrm37yrzvrv9ns0vsar18i0b94mgqbsnkw3122mzrlhfy1"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; - sevenbridges = derive2 { name="sevenbridges"; version="1.26.0"; sha256="170msiz4n1n16m3cddnw6jpwvh2j7y6gi6cvbzr4psqabynlvn7x"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; - shinyMethyl = derive2 { name="shinyMethyl"; version="1.32.0"; sha256="1636y3f9653l5dn4pyrq7kz54vjy2fmg4qrr9pav0215rfilgzyy"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; - shinyepico = derive2 { name="shinyepico"; version="1.4.2"; sha256="1pq6kmsq3b965vqc0y2aqniimwpv8i11af22qypcv0mhqk1xlx1m"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; - sigFeature = derive2 { name="sigFeature"; version="1.14.0"; sha256="0770hqhq7y1q3mknsfjh0x2rwlmm85wqhi7375bpj612npaqdc7m"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; - sigPathway = derive2 { name="sigPathway"; version="1.64.0"; sha256="1c2kwhbxgf66az7ssm2mab9n5x59zy4kxq8vblz5r9636xqaysif"; depends=[]; }; - siggenes = derive2 { name="siggenes"; version="1.70.0"; sha256="0amjqm2c8p1vjzx109p7n81wbsbx8rljwn6mbkl7dpi834im9d7l"; depends=[Biobase multtest scrime]; }; - sights = derive2 { name="sights"; version="1.22.0"; sha256="040qm341bk62pqdl58dninh8mbh7spn8m21vp2nhnmgdqy1v4kqp"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; - signatureSearch = derive2 { name="signatureSearch"; version="1.10.0"; sha256="1kjxbfvbhhxlxg4ms74pz03vmpn39315rw2p0gq2amr94dqv6yd5"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment visNetwork]; }; - signeR = derive2 { name="signeR"; version="1.22.0"; sha256="13jv0f90p462clwncp2ggky0n1xx4vaicak8712dnqzfzch04pzm"; depends=[BiocGenerics Biostrings class GenomeInfoDb GenomicRanges IRanges nloptr NMF PMCMRplus Rcpp RcppArmadillo VariantAnnotation]; }; - sigsquared = derive2 { name="sigsquared"; version="1.28.0"; sha256="13dvbl3s345yqmdxcrk19ql1asspgcc08p9sfyx1n6caamwg90a9"; depends=[Biobase survival]; }; - similaRpeak = derive2 { name="similaRpeak"; version="1.28.0"; sha256="14bkmfwwx0x8gz78bzyhfgy5rpvvafxq5z9r8knv4qj6hp1kalsh"; depends=[R6]; }; - simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.6.1"; sha256="0qblgdxmr7zc981529cca3ykakql618q1im6gaxw8pwws5jgpyk6"; depends=[AnnotationDbi BiocGenerics circlize clue cluster colorspace ComplexHeatmap digest GetoptLong GlobalOptions GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; - sincell = derive2 { name="sincell"; version="1.28.0"; sha256="152hlryc3xhkyp2v7fq20f0d04b2wvr09fl5p8fhiw1r0465vyab"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; - single = derive2 { name="single"; version="1.0.0"; sha256="1nx6cglidcmxznmvpkydj1lhgb2wyisl3yqqj0kfzbng2mxv6g0r"; depends=[BiocGenerics Biostrings dplyr GenomicAlignments IRanges reshape2 rlang Rsamtools stringr tidyr]; }; - singleCellTK = derive2 { name="singleCellTK"; version="2.6.0"; sha256="06hvxxdd8sdx8idgfqpnlxap7mq80asqgl5iq2paa1p6zvjk0w1b"; depends=[ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT enrichR ExperimentHub fields fishpond generics ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly plyr R_utils reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq scuttle Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SoupX SummarizedExperiment sva TENxPBMCData tibble TrajectoryUtils TSCAN tximport VAM withr yaml zinbwave]; }; - singscore = derive2 { name="singscore"; version="1.16.0"; sha256="0jnncpv9bjpp8xlzpx6ks78pil87cg0a3i5ihsp0yrs676dmhhhr"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; - sitadela = derive2 { name="sitadela"; version="1.4.0"; sha256="162y2xfnv3bpgcmzrr9mhbgns3q1sfpsiif163r3p667iic80ffv"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; - sitePath = derive2 { name="sitePath"; version="1.12.0"; sha256="0kxg6zpljzqbvz00k2akv3fl5kwf90lldmgjzr429gwcip5ggzdf"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; - sizepower = derive2 { name="sizepower"; version="1.66.0"; sha256="0f5y2b4zx978js5y3vm77dcc1lvn9lqyjnpi5mdqxcmp6n5sbwgl"; depends=[]; }; - skewr = derive2 { name="skewr"; version="1.28.0"; sha256="0b800yjyfdqwzaxrkair1dgd54l5bdw72ppln464fppqq3lmr9l3"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; - slalom = derive2 { name="slalom"; version="1.18.0"; sha256="04yy7h4d9jm44alg4w0yzslk4h8qrlz1ij9d5i40hlbra79nsy69"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; - slingshot = derive2 { name="slingshot"; version="2.4.0"; sha256="0xapi66l5z2qdqns3fcjqcjal6npqj7rxra60lwjvbrq49pq69p2"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - snapCGH = derive2 { name="snapCGH"; version="1.66.0"; sha256="03mz36ghpj4fvl9klhjgkqnxds6ickva2azq3hnxmb7jnak3rnlq"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; - snapcount = derive2 { name="snapcount"; version="1.8.0"; sha256="0dh7havwzl1fhypf5aygi56agf6hqps714viq9rjzk4bd9shmcna"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; - snifter = derive2 { name="snifter"; version="1.6.0"; sha256="09hp1lchzhm8iilc34lnyaxr5002zcg3ihcfv4fv07vc5i52ydmw"; depends=[assertthat basilisk irlba reticulate]; }; - snm = derive2 { name="snm"; version="1.44.0"; sha256="08vpzp7xr2w2qg1zcxqqj4wayik661cv2s5niivb7r82jxf6rm6i"; depends=[corpcor lme4]; }; - snpStats = derive2 { name="snpStats"; version="1.46.0"; sha256="0a5b5nqc7n965jk45ijwkzbn416ib4gfhp8xl39z8f2bdskip4a2"; depends=[BiocGenerics Matrix survival zlibbioc]; }; - soGGi = derive2 { name="soGGi"; version="1.28.0"; sha256="0hdqikcisva4blak5znwwv4xxvxxkg5n3jx0q4mhbqk7sp28p8vp"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - sojourner = derive2 { name="sojourner"; version="1.10.0"; sha256="19gg70hjydxqj46ll6hanl3yvcpc9kmy65i1hh1w6yqph05xralb"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang scales shiny shinyjs sp truncnorm]; }; - sparrow = derive2 { name="sparrow"; version="1.2.0"; sha256="0asmqfadqjc99dvrcdsz6jcvqkkqd5d3cf822jpf93ywk75a7gww"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; - sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.20.0"; sha256="16wgj99i05s4gvv8i7k8ycdmyjs2bp6n61ahab0x10qhw823yy4s"; depends=[MASS MCMCpack optparse tmvtnorm]; }; - sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.8.0"; sha256="0p12kay7p5zbfm2589wdx0n9jhgpf5fb2fsmkhn3p4ck4xcy13x2"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; - sparsenetgls = derive2 { name="sparsenetgls"; version="1.14.0"; sha256="0818i5hk62gynb3f5slrw5b86n9gj14p9kabk1lhmdhqpbynpar5"; depends=[glmnet huge MASS Matrix]; }; - spatialDE = derive2 { name="spatialDE"; version="1.2.0"; sha256="1hbs8z8hfgmnj4zzjppg5zpkv6i4baaqargiwf8gqdv1abzi3dbn"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate S4Vectors scales SpatialExperiment SummarizedExperiment]; }; - spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.2.0"; sha256="1jl9p53k7sxjg4nn5qkfcsf0p1warg26j488x5nkpnqhng59pg0q"; depends=[av BiocFileCache BiocParallel data_table DESeq2 distinct dynamicTreeCut edgeR flashClust genefilter ggdendro ggplot2 ggplotify gplots gridExtra grImport HDF5Array htmlwidgets igraph limma magick Matrix plotly pROC rappdirs reshape2 rols rsvg S4Vectors scater scran scuttle shiny shinydashboard SingleCellExperiment SummarizedExperiment UpSetR visNetwork WGCNA xml2 yaml]; }; - spatzie = derive2 { name="spatzie"; version="1.2.0"; sha256="0zgy1m4ljsr51mdd8bqv64gx08yqk9r3cgbszyq4k0sjk136xg2m"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; - specL = derive2 { name="specL"; version="1.30.0"; sha256="0xrjbwsjc02amgmmsj5s63fdlimf4726d9s22jmm243b6s16nbh6"; depends=[DBI protViz RSQLite seqinr]; }; - spicyR = derive2 { name="spicyR"; version="1.8.0"; sha256="1znndd64nz9jgw2paj5qb9wr7zrdl905q7kz0g159syl8lzlixg7"; depends=[BiocGenerics BiocParallel concaveman data_table dplyr ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors scam spatstat_core spatstat_geom tidyr]; }; - spikeLI = derive2 { name="spikeLI"; version="2.56.0"; sha256="1sjy783ab394x3f3wqsh1slcq6i2xdns25w1pkp7hvjwsrmmq8f4"; depends=[]; }; - spiky = derive2 { name="spiky"; version="1.2.0"; sha256="0nfazdrlzgh1p3rsfmaibkyag5h0mmbbmnhaqg6nxnv92yddqfyr"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; - spkTools = derive2 { name="spkTools"; version="1.52.0"; sha256="006v158b9397r1w64ah7rqxdzj4sxha5cb82rdcxssbwkz7zmghl"; depends=[Biobase gtools RColorBrewer]; }; - splatter = derive2 { name="splatter"; version="1.20.0"; sha256="1bh5w1jsxaizs0n9f9pv2s84l6j4k3fgdbyxwvzzva602kwhxbqf"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; - splineTimeR = derive2 { name="splineTimeR"; version="1.24.0"; sha256="1b0mlfmy237s4pw8ycf4z9qjq41kk1ayky6ga211bik35x0k6yzs"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; - splots = derive2 { name="splots"; version="1.62.0"; sha256="08mrk44v90zs7hj7k809d6ay88rj7cpx3ijmnshp7fmf998l3pfm"; depends=[RColorBrewer]; }; - spqn = derive2 { name="spqn"; version="1.8.0"; sha256="02dd1irl15nb9ydwsjbdx1n01xiav0aylnmyipv1rjajciyg0xsq"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; - srnadiff = derive2 { name="srnadiff"; version="1.16.0"; sha256="1g2g6y2mlqq7p79q5xm11i963gjxbzzxvggz5lzpl55kaz8bxxlr"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - ssPATHS = derive2 { name="ssPATHS"; version="1.10.0"; sha256="0zf9mpjsrcvp4mj41dz9r8q0r94b5rsgm9f17qv2pyl7a33daivv"; depends=[dml MESS ROCR SummarizedExperiment]; }; - sscore = derive2 { name="sscore"; version="1.68.0"; sha256="10zvpqjg19l1jwcvbz5bc2gm0gr25apnzl19y7d886bkd9xc68wl"; depends=[affy affyio]; }; - sscu = derive2 { name="sscu"; version="2.26.0"; sha256="1dd1kf6h062d2billx632ykbjyzygsmjlkvy7cfqq690bi54kqpj"; depends=[BiocGenerics Biostrings seqinr]; }; - ssize = derive2 { name="ssize"; version="1.70.0"; sha256="08bdw9x6dj52fv3jhp27pkbpri81mpn8rggawb5lp1si4fwaxzgk"; depends=[gdata xtable]; }; - ssrch = derive2 { name="ssrch"; version="1.12.0"; sha256="0l9rhi66knb9d9v93qbxf9vwz9wpz82vlfs39i5bwd3mprlzp6kx"; depends=[DT shiny]; }; - ssviz = derive2 { name="ssviz"; version="1.30.0"; sha256="0hnbcxn4m1q2yffi3xrxk4mbjxjn5axl5p8ffli145jjr00n0mq5"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; - staRank = derive2 { name="staRank"; version="1.38.0"; sha256="0jbyg1b2gc9snnqnybapqmp5mwyhh9b3l4dswfxbx3jdl514wamr"; depends=[cellHTS2]; }; - stageR = derive2 { name="stageR"; version="1.18.0"; sha256="0ns3ih6l4na6irshrc5iy4d9qf7hrnqq3ndnlcjb2i1cn38l2w9y"; depends=[SummarizedExperiment]; }; - standR = derive2 { name="standR"; version="1.0.0"; sha256="0cqsvnm4ffg0gq5qlx81hmhz8cjpsc451jmwlvfzrhhxy3i9d1v5"; depends=[Biobase BiocGenerics dplyr edgeR ggplot2 limma mclustcomp patchwork readr rlang ruv S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tibble tidyr]; }; - statTarget = derive2 { name="statTarget"; version="1.26.0"; sha256="0k182sp8vzrwn3zxxqyi11bq0ca90w5ly0pdc03kflgr4z186fs8"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; - stepNorm = derive2 { name="stepNorm"; version="1.68.0"; sha256="1czlhb9cqhacl4g87ydgsb8i9ilcxr9gb64kx7vxk49dv6ffyszi"; depends=[marray MASS]; }; - strandCheckR = derive2 { name="strandCheckR"; version="1.14.0"; sha256="15r5ng9z9zyijm7w562dml56lxjvj290cxbjm8r59dvb7g9br07b"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - struct = derive2 { name="struct"; version="1.8.0"; sha256="03cd2v72m0p0k99qhvpsbhvdlvx608a7765h6zcawbys35h7k020"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; - structToolbox = derive2 { name="structToolbox"; version="1.8.0"; sha256="015iabqbjy4zar42dnrnj3602y89rc0ln2y3chrwfk3bd00317dj"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; - subSeq = derive2 { name="subSeq"; version="1.26.0"; sha256="1fwnjw0bqjqwb39i4cy34ipa6nw6jmk01d4la7r3fmf57xz73sp7"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; - supersigs = derive2 { name="supersigs"; version="1.4.0"; sha256="0llhk099ql7xv5wcb710pgz6r5ljiac5g9bjwwvzvg3rnjnsq9im"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; - supraHex = derive2 { name="supraHex"; version="1.34.0"; sha256="1677sffcndrymh8dlahl7qh35zs9k5h0h4x040a7lal1iaqzgxdi"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; - surfaltr = derive2 { name="surfaltr"; version="1.2.2"; sha256="1dx8nfvyknqahszg94064mkvb45b79biibagqz6w24lmymdvxv0v"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; - survcomp = derive2 { name="survcomp"; version="1.46.0"; sha256="1b39s6v0awmznfs2gkklps1x3pnk0b4420vhrhgfv5lakz89f1zi"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; - survtype = derive2 { name="survtype"; version="1.12.0"; sha256="0ihq2js9j2wkbqpgvpk8mzd0rrjvwmmdph84nhm20z04mfbsl4k5"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; - sva = derive2 { name="sva"; version="3.44.0"; sha256="0ka259rn0la0hjslj7w24q1dyyh79h84nw6mxp7armqbfjb207a4"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; - svaNUMT = derive2 { name="svaNUMT"; version="1.2.0"; sha256="13kk77bqsm8pk8kwjk8ag4mg7f8fqgpypwkdv5zhqds51zb14pkm"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; - svaRetro = derive2 { name="svaRetro"; version="1.2.0"; sha256="15q7k9rjds0qzyighfp1bn6j8jr36h9wckvb1sfg0zk3lhzr04sz"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; - swfdr = derive2 { name="swfdr"; version="1.22.0"; sha256="1gkam38fcn0i5vrkngapf2wbbixbr059xi1xl04iwnllz1xg0sny"; depends=[]; }; - switchBox = derive2 { name="switchBox"; version="1.32.0"; sha256="0fyysinxa14fx2lwmpishyva7jn4m4k9cipxmbhinf2v5z5h3qj5"; depends=[gplots pROC]; }; - switchde = derive2 { name="switchde"; version="1.22.0"; sha256="0mgif3d6pkhivk8yrjdp4xm6kad5vm9g18mvn617zd71zfqd902y"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; - synapsis = derive2 { name="synapsis"; version="1.2.0"; sha256="1m8js52l8spp3w40pypbha1ydgbjz0ypylk08gjxclw3jp9abwjy"; depends=[EBImage]; }; - synapter = derive2 { name="synapter"; version="2.20.1"; sha256="193j8r44msr0hhb9hvpk5yl0i2ns1lpzbfb585jfiji6w37lskrp"; depends=[Biobase Biostrings cleaver lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; - synergyfinder = derive2 { name="synergyfinder"; version="3.4.5"; sha256="01m56wbb9qlyv4fj939h68g31vm0c1rfj0xammc5g2lwwwnnascz"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; - synlet = derive2 { name="synlet"; version="1.26.0"; sha256="0zygs6gskgddb68as4yh3bw1kjlsxk60rym1f6yxj5vzln0ka53c"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - systemPipeR = derive2 { name="systemPipeR"; version="2.2.2"; sha256="1yybbff29gwv6rm0nw4yjw73bbl5prfj8gj4zky917smjfd459im"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; - systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.6.1"; sha256="1b0x9vy7mkppf20c0i5p65wjicz12njx7in9w4vjqggvixbc9cjn"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; - systemPipeTools = derive2 { name="systemPipeTools"; version="1.4.0"; sha256="0zandgmzwj5b3hk8w60rmmc40hkpsvg9vynpix50hi81s8vwj26j"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; - tLOH = derive2 { name="tLOH"; version="1.4.0"; sha256="03ap5c7pznmflnlx7q9bwl8d64x68vz849ld6lxhm7j6wsva2c9m"; depends=[data_table dplyr GenomicRanges ggplot2 MatrixGenerics purrr scales VariantAnnotation]; }; - tRNA = derive2 { name="tRNA"; version="1.14.0"; sha256="140lpja0brw898is5xazxdz1h1agfzwwx9w63fhxacyx1ll43h41"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; - tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.14.0"; sha256="1c3jmx3ddr7yiijpv08lzgk52r49g2ir4xayf65fzqb90ni6k04q"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; - tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.16.0"; sha256="1zfk4a4qm76ah2z0bmkl0h0xpbqfjlkgmiy478gi7xvnd5rm0gwy"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; - tRanslatome = derive2 { name="tRanslatome"; version="1.34.0"; sha256="0pv11lrg0fsfpv933k7zjlqswb5zqqxx12cwrfkz91v3x3ivsbza"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; - tanggle = derive2 { name="tanggle"; version="1.2.0"; sha256="1r04qmxq9ww0ly4mzpkxqv7xyva3mqy02lh3vw13v4dp9d9zaf7c"; depends=[ape ggplot2 ggtree phangorn]; }; - target = derive2 { name="target"; version="1.10.0"; sha256="00dwbwzv6y9nfs1cc2jv39b0fcjcbzwfnqmv3zicwfq1lsa4z9mv"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; - tenXplore = derive2 { name="tenXplore"; version="1.18.1"; sha256="0abybqmmn5ah189c38j7l1msm985vdzk42a1cw0pkskvan62hw50"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; - ternarynet = derive2 { name="ternarynet"; version="1.40.0"; sha256="02r53h6224f8jwwvnv1n09s8i8akhq2qf562crq14m8qk5xw4scf"; depends=[BiocParallel igraph]; }; - terraTCGAdata = derive2 { name="terraTCGAdata"; version="1.0.0"; sha256="16sc6n1cgrxr425024k37vzy1n2pij8n7lzxq383r73wyp5z3zkc"; depends=[AnVIL BiocFileCache dplyr GenomicRanges MultiAssayExperiment RaggedExperiment readr S4Vectors TCGAutils tidyr]; }; - tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.6.3"; sha256="1b90n9sirpff8dh8kh8m2p4lnpfpqfh0zwvhpk5ymnw7j7x1vw7n"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect ttservice vctrs]; }; - tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.6.1"; sha256="0y30479w9nim6yap55fcg99qi4599rnliacqaiq693qwnrglksmg"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect vctrs]; }; - tidybulk = derive2 { name="tidybulk"; version="1.8.2"; sha256="0ma28j78hcmhwzz6fcc9gp0rpwd1j2wf5nwhnc1xq66sm0wn299g"; depends=[dplyr GenomicRanges lifecycle magrittr preprocessCore purrr readr rlang scales stringi stringr SummarizedExperiment tibble tidyr tidyselect]; }; - tigre = derive2 { name="tigre"; version="1.50.0"; sha256="0a4nn8q6iz20xfpwjvdp387cc3w0wdd9rpn6p8gh3dkqh8wsnggd"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; - tilingArray = derive2 { name="tilingArray"; version="1.74.0"; sha256="17n30c0nybsqvmm920zfxfx82yz0afnv1p14jcrnhf3qi9ipdjna"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; - timeOmics = derive2 { name="timeOmics"; version="1.7.1"; sha256="0s3h8rk7k2s6fnac3v5m8hc2mmdnb4dvbld6ad1as9ac0nvz3521"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr propr purrr stringr tibble tidyr]; }; - timecourse = derive2 { name="timecourse"; version="1.68.0"; sha256="10gin2dmg955ksg5s81kahracf889vdzjkj1f5nk59bpdyps2ga0"; depends=[Biobase limma marray MASS]; }; - timescape = derive2 { name="timescape"; version="1.20.0"; sha256="0w7jbk49647hzx1ny8xa8mf5q8nyfdn92xmw4k4lm8d7w1xbjx75"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; - tkWidgets = derive2 { name="tkWidgets"; version="1.74.0"; sha256="0b7ic4sz8d93b4cp4idhcywc9j9y8dvamz5y4mm9p0xhn404s4k0"; depends=[DynDoc widgetTools]; }; - tomoda = derive2 { name="tomoda"; version="1.6.0"; sha256="032h10674vyp017jww0rfpgs8jn7kl5m9w36j3azzvjh5p04n9s7"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; - tomoseqr = derive2 { name="tomoseqr"; version="1.0.0"; sha256="0afxzfqllr1l8mhkv75wismhsb1ipsspws18x3gyx2cvwi3yz5mw"; depends=[animation BiocFileCache dplyr purrr readr shiny stringr tibble]; }; - topGO = derive2 { name="topGO"; version="2.48.0"; sha256="125r42ymk1irjmwk4sywjkcshs71s26p3zsvryfdvf56k5w162v6"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; - topconfects = derive2 { name="topconfects"; version="1.12.0"; sha256="0v1cq7gvbwdqxczmy5vrw8yqk7h1bvx3rils4pkv7w9nhqps5g4k"; depends=[assertthat ggplot2]; }; - topdownr = derive2 { name="topdownr"; version="1.18.0"; sha256="1qrjgbs2lh851d22bcl75574jnyc554aqqxb34zdnpvpwavaqaya"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; - trackViewer = derive2 { name="trackViewer"; version="1.32.1"; sha256="0hifh15z5d83qmrvh3kpi8i18dfqqfj6kn4kqkkcyxbfm1yx62h1"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rcpp Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales]; }; - tracktables = derive2 { name="tracktables"; version="1.30.0"; sha256="0xv4n8avwls10dk2kn2mhjq69cfqkackdn1jdz85xq5z42qnkl10"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; - tradeSeq = derive2 { name="tradeSeq"; version="1.10.0"; sha256="0v9nqxrwa69qhmyaicn2vvs8haha4kzs93iqim306331vadp9qm0"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; - transcriptR = derive2 { name="transcriptR"; version="1.24.0"; sha256="1zc6aasd5nzwl9jxr0rdriiq85adqdbfi5b9m3jyf69pa71sgy03"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; - transcriptogramer = derive2 { name="transcriptogramer"; version="1.18.0"; sha256="1zwyiabw3iagbp95q16pzwdx1i8w77ibqi5wawn1j046q9qi20fh"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; - transformGamPoi = derive2 { name="transformGamPoi"; version="1.2.0"; sha256="0nc2524yfq44zlfiv8nawaj83i04kpmrmr18jg81gjcya6n0xayq"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics Rcpp SummarizedExperiment]; }; - transite = derive2 { name="transite"; version="1.14.0"; sha256="0h6d9akl1amz0b0k6f39pfg8szd7z85lxicw2bzy74pfmcdig3an"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; - transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.6.1"; sha256="15a75mzbdzd8fm65mp7qpzwhgl0hy1r9ny02m97c4cm7qq0rl2hm"; depends=[dplyr KEGGREST purrr RCy3 tibble]; }; - traseR = derive2 { name="traseR"; version="1.26.0"; sha256="1saas8qiiir4hafshs8i8pbpj3rfnsngrfg9a4ryalnwnbqyh519"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; - traviz = derive2 { name="traviz"; version="1.2.0"; sha256="1y2gckk7nm1yb8qv1llkal3mzmdk11kgmdagflymhla4nx2gdgay"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; - treeio = derive2 { name="treeio"; version="1.20.2"; sha256="1jymbyl82n88ckw0nkbj72rvlxbk5m7xmcmq3fyi885z7aasc0x1"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; - treekoR = derive2 { name="treekoR"; version="1.4.0"; sha256="0sd1vk1hzvma0644p8wz4037gmm5wpf1d8n22fa0d5m7c97qijrl"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; - trena = derive2 { name="trena"; version="1.18.1"; sha256="1d8rf8403by7bfqckhv25qz8bhx4ph0hq48w17d255awb1i8z6ly"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 WGCNA xgboost]; }; - tricycle = derive2 { name="tricycle"; version="1.4.0"; sha256="0bjkajcz6xcfak6071d0ihakrvgf7s0pmkn6vqkjd6yxbfld7zln"; depends=[AnnotationDbi circular dplyr GenomicRanges ggnewscale ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; - trigger = derive2 { name="trigger"; version="1.42.0"; sha256="09gbchwpifx5dkmw3irshb63jl22fn2sxsj450krqjjq1gjq1xhx"; depends=[corpcor qtl qvalue sva]; }; - trio = derive2 { name="trio"; version="3.34.0"; sha256="1d6gwzx99np8yrsmqnn23s94ib6k41290sv2h4nmzblsidsimlbs"; depends=[LogicReg siggenes survival]; }; - triplex = derive2 { name="triplex"; version="1.36.0"; sha256="07yfm0vvrvw21hvdrprsw8crjb07hvz36w83avrqq16v3l64xgq8"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; - tripr = derive2 { name="tripr"; version="1.2.0"; sha256="0v5yqzh20ha7zbl3d8xl04gw3qq9mfpnggk4aw3k8ckqasii10q7"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr pryr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; - tscR = derive2 { name="tscR"; version="1.8.0"; sha256="0i8d739xd39bvj05bx4x98nhpdl1mjsdsci1vdw6ri2kh7hrihji"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges kmlShape knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; - tspair = derive2 { name="tspair"; version="1.53.0"; sha256="04xxrm313mnknhc38vl1sx6hic2g1x1xaa5772qlc7ip957hz85k"; depends=[Biobase]; }; - ttgsea = derive2 { name="ttgsea"; version="1.4.0"; sha256="15kzy6ah7yz1ldx79g3z3n2ipfc842hg1l72ijcrsni47l6gs8ss"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; - tweeDEseq = derive2 { name="tweeDEseq"; version="1.42.0"; sha256="152alh46baz6kjfqsawyh74if4jnyqq4axxw7ihj4b4c79r5bq9g"; depends=[cqn edgeR limma MASS]; }; - twilight = derive2 { name="twilight"; version="1.72.0"; sha256="1s0xv8kh5mfwa9z3f5096bq99g8ncnygcih7xb0fpvj6knpp0w5k"; depends=[Biobase]; }; - twoddpcr = derive2 { name="twoddpcr"; version="1.20.0"; sha256="0gjsbn47a8rid73krlip1nczhwnfi85a7023pchc9j98y85lv8w9"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; - txcutr = derive2 { name="txcutr"; version="1.2.0"; sha256="016y2g0n1394n3ynfxszxsnh9874r1f1jy4yh9c48c3ivkp36nk1"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; - tximeta = derive2 { name="tximeta"; version="1.14.1"; sha256="0hxq5lkrdiz0a3xpl88adrv4m55jr6g46a5m9pamc0w4bxddirr8"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; - tximport = derive2 { name="tximport"; version="1.24.0"; sha256="1cnra82pvwz79a1hkw0phc6aa3v43r5p4nx8xyx5wzmkd7rjkc8x"; depends=[]; }; - uSORT = derive2 { name="uSORT"; version="1.22.0"; sha256="1fq9zqa0kgdzvc0bhr60kqkl27b5y525czfm0w7qmbv3a832mhhd"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; - uncoverappLib = derive2 { name="uncoverappLib"; version="1.6.0"; sha256="0r0vgi7pq93vpw7mcqw96ixfgkhwllw16v20jsk3v27jx5gvr31c"; depends=[BiocFileCache BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools S4Vectors shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.32.0"; sha256="1skfs94a6bv05c844zf5vfqw1fbgxyppgdnckdbhxg2a2470a4wh"; depends=[BiocGenerics HTqPCR]; }; - universalmotif = derive2 { name="universalmotif"; version="1.14.1"; sha256="1sm54z8aq3534qjsa19wychhwcvwnjlkydmiqqvidiiwcxwqpjsr"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; }; - updateObject = derive2 { name="updateObject"; version="1.0.0"; sha256="0ng927m9hrmwlnx02pm35b5173a0wx1b2k54gww9xc1pz9b5zp24"; depends=[BiocGenerics digest S4Vectors]; }; - variancePartition = derive2 { name="variancePartition"; version="1.26.0"; sha256="0wk1xql8b0gxyrqz9hs54xvmp7qdw9b8jnv88p4vgv061iwyk7wv"; depends=[aod Biobase BiocParallel doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix pbkrtest progress Rdpack reshape2 RhpcBLASctl rlang scales]; }; - vbmp = derive2 { name="vbmp"; version="1.64.0"; sha256="02xxvam2dmhhqvm30gxh2v16894qbqha1mc7bl78gq5sc067yr0n"; depends=[]; }; - velociraptor = derive2 { name="velociraptor"; version="1.6.0"; sha256="07hbrjqwlxpjrznd9jbv3psqgrsadpa626acgzc02wkl9vfgg5bc"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; - veloviz = derive2 { name="veloviz"; version="1.2.1"; sha256="0k84ghg5c0qlkmd1ck3k1gly8gyd7l1qysm2jmw60nf1b8w8lxxz"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; - vidger = derive2 { name="vidger"; version="1.16.0"; sha256="0kn06i2kb6drq4g5y1xx8wrw4fp5q9147d5mnfj0jvi5db7cmsav"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; - viper = derive2 { name="viper"; version="1.30.0"; sha256="0ii6fg0bzgnwfrhlvkh34c17xg2wpyqvb1hg1qsh7prv8dij4q0x"; depends=[Biobase e1071 KernSmooth mixtools]; }; - vissE = derive2 { name="vissE"; version="1.4.0"; sha256="01gw1cjm9nz804hw64vsk2jicb86p0dl1qrgkadnixxzcksgb3gz"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; - vsn = derive2 { name="vsn"; version="3.64.0"; sha256="1ja7vdjvgx671l57f9fzfn4vc6q7xzfmqs4krg2rdyfaaf531gqf"; depends=[affy Biobase ggplot2 lattice limma]; }; - vtpnet = derive2 { name="vtpnet"; version="0.36.0"; sha256="10sr9rpq5bb1a76wa4r80w01cm5wmijc83f0aq2idbw8qbvxn39c"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; - vulcan = derive2 { name="vulcan"; version="1.18.0"; sha256="0f9gmypm1n3g0a7k76kkzyxa3pm3jsqyb75d1xf148gr1n0qqf2w"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; - waddR = derive2 { name="waddR"; version="1.10.0"; sha256="15sg5912vvl3bhw1cfrk22r5azisp18dawipybj78rgzbqvrzga3"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; - wateRmelon = derive2 { name="wateRmelon"; version="2.2.0"; sha256="0adqyfabrvfcaj3mwp0rbqlcgpj92yb205cyhibbrs5gdr5ri4pv"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; - wavClusteR = derive2 { name="wavClusteR"; version="2.30.0"; sha256="04di095i9i19j9ppx8gdsk7n18vd02d4rjdi9d4a3p0xv05ihnb6"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; - weaver = derive2 { name="weaver"; version="1.62.0"; sha256="10d3pnrs26xmk2dpnfvkd5ngl9l5xcfcsch4za8jkissfs3w9y24"; depends=[codetools digest]; }; - webbioc = derive2 { name="webbioc"; version="1.68.0"; sha256="1g3srxsa2fqcn3r4wz4y19fwjmw3vawlcvdw6lbjdnvbgcafq1ah"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; - weitrix = derive2 { name="weitrix"; version="1.8.0"; sha256="0xkmh3k174jywrvaqanbbw4xinymx1fgds1n4i2qnv6bkdpcjfi1"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; - widgetTools = derive2 { name="widgetTools"; version="1.74.0"; sha256="10w1s5h4za6ibmphvj145ir3lp22qgah2z8fvmipmf8ciq1jf86d"; depends=[]; }; - wiggleplotr = derive2 { name="wiggleplotr"; version="1.20.0"; sha256="0s128mm5w8n072k6j0fv1mxnxjpwisjp5lpz8a9z96cnn69bnr0i"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; - wpm = derive2 { name="wpm"; version="1.6.0"; sha256="12b3sf1xzxynv7c7r24rgzfzgznw3s00rwyg26f9c2agk8pz1cjq"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; - wppi = derive2 { name="wppi"; version="1.4.0"; sha256="1008s39bb7sd261cy1vfgdah7bmhfw9qq322fh7g4wvpfw63ii9f"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; - xcms = derive2 { name="xcms"; version="3.18.0"; sha256="0p2zd2728lj5q8y24gdfvsjijd6zl2i73hrcf017n32jq7vn71xm"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; - xcore = derive2 { name="xcore"; version="1.0.0"; sha256="1czys3nbw1hzy0p6bblqa6qvp68xd7iifi2isw9dhsn2k4nkr0xf"; depends=[DelayedArray edgeR foreach GenomicRanges glmnet IRanges iterators magrittr Matrix MultiAssayExperiment S4Vectors]; }; - xmapbridge = derive2 { name="xmapbridge"; version="1.54.0"; sha256="1n3nxc4jwxf5z32i70sza52nyk29adhp8vc3hac7r5b8mbi6gg10"; depends=[]; }; - yamss = derive2 { name="yamss"; version="1.22.0"; sha256="1lcfxw73cxvpy3bnq28pxdy5128mpq5xklsa0mzxdjyqc4g55hy8"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; - yarn = derive2 { name="yarn"; version="1.22.0"; sha256="0z5202pqq02fwm8qf1g36004k7sv668s1xacbpr1cvw5sl452lbg"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; - zFPKM = derive2 { name="zFPKM"; version="1.18.0"; sha256="1h7g553rgb5mkmmsp8dyqqs9n9x17xmmcg3iijhb54nyrr2j1mji"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; - zellkonverter = derive2 { name="zellkonverter"; version="1.6.5"; sha256="0rxpjkisjj1xjchjjm72k8za5hn48wbdahmbllljvxm5ii6k36k6"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; - zinbwave = derive2 { name="zinbwave"; version="1.18.0"; sha256="0vpz721sciw5b4ypxj5lj8p53gwkpfwlwkn6k3y8i65zg80p1g6i"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; - zlibbioc = derive2 { name="zlibbioc"; version="1.42.0"; sha256="0w0y9jixdk6akmasn55g9g0nhlh93hbca5bwx5w1fypnvqrqpxzv"; depends=[]; }; + ABSSeq = derive2 { name="ABSSeq"; version="1.52.0"; sha256="1ypd0wg3k2zzl0zf15c16dc38hfpsm5vv4x0x0yf90x0f8b6jpaz"; depends=[limma locfit]; }; + ABarray = derive2 { name="ABarray"; version="1.66.0"; sha256="02rjxzbrzphl28z8zpgw3gavzlzlx71n5ld8sb3im6xpn81ykvfh"; depends=[Biobase multtest]; }; + ACE = derive2 { name="ACE"; version="1.16.0"; sha256="12gmdkzm9wnrq793xqvw3mzwmmsm1vkh36llapr7m7q4dmcfgxr0"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; + ACME = derive2 { name="ACME"; version="2.54.0"; sha256="0prcaxqmzm4hhpv228xh0glhm166gs17sa9h4lqrm03pwrjrdqdw"; depends=[Biobase BiocGenerics]; }; + ADAM = derive2 { name="ADAM"; version="1.14.0"; sha256="1s1mzjxqld8gllfh6z9kg30klb4y1jrkrif7vwr18c0mhamf47a6"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; + ADAMgui = derive2 { name="ADAMgui"; version="1.14.0"; sha256="1ks799kgdmlxn5iyj6rzj04cm28klivclz3bg6bc4wad2q7h4ra9"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; + ADImpute = derive2 { name="ADImpute"; version="1.8.0"; sha256="0wrprxd91vi4wwh9wixhx1ppbjsb56r4kcxgqz8w6ahr3z2387im"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.38.0"; sha256="0g9x3lnr56035wq9ijdcri4sz5pwj8184yxm415gmsxrii9xvpfd"; depends=[aCGH bit cluster DNAcopy ff GLAD snapCGH tilingArray waveslim]; }; + AGDEX = derive2 { name="AGDEX"; version="1.46.0"; sha256="0yvdx32yr4mv7dl5ycpbxhrkm6csrr7k3398ggjavdcfhz54dgr8"; depends=[Biobase GSEABase]; }; + AIMS = derive2 { name="AIMS"; version="1.30.0"; sha256="1civ4a14ynccv6xs27fm95fw6254l1z0q37546ivyv2mhbz0d2i1"; depends=[Biobase e1071]; }; + ALDEx2 = derive2 { name="ALDEx2"; version="1.30.0"; sha256="0585s5pb8zr9il1vhxw9vjzzajmdcjmf9zz3zlc5vpczd3fnzfkf"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; + AMARETTO = derive2 { name="AMARETTO"; version="1.13.0"; sha256="18w65sf3h4yzw9v5xgkalxnkmgzgsx100v7qc7z4ifx10lgpji5n"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; + AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.24.0"; sha256="0zzl5dv64yhdivsm2pgsfjikygib9pkfiv34h1lnmqrj6yivvvw8"; depends=[]; }; + ANCOMBC = derive2 { name="ANCOMBC"; version="2.0.1"; sha256="1bwzvi6j3s66dcll1lb4xy25j4nfn1ln6mc3flh0wgy13l26x8m6"; depends=[CVXR DescTools doParallel doRNG dplyr emmeans energy foreach Hmisc lme4 lmerTest magrittr MASS mia nloptr Rdpack rlang rngtools S4Vectors SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; + ANF = derive2 { name="ANF"; version="1.20.0"; sha256="0yfwvgx7144r894fr13sx4gyyq6ljh7y734wx74sb7q80cl2gs1j"; depends=[Biobase igraph MASS RColorBrewer survival]; }; + APAlyzer = derive2 { name="APAlyzer"; version="1.12.0"; sha256="1iaz9ircfh5x3z5pibn5vnd4lbbr7m5ypk97xnizn22z41aqrxn3"; depends=[DESeq2 dplyr GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HybridMTest repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; + APL = derive2 { name="APL"; version="1.2.0"; sha256="1i02m70aa67m1h81q9lz3qmc52sc6cjicgxd9krqm9r6fpgcf22g"; depends=[ggplot2 ggrepel magrittr org_Hs_eg_db org_Mm_eg_db plotly reticulate rlang Seurat SingleCellExperiment SummarizedExperiment topGO viridisLite]; }; + ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.38.0"; sha256="14mffjsy7cwpa2xf8zdqwdk6mnfj3lf06y8s59ndh531b45nw5wc"; depends=[ARRmData]; }; + ASAFE = derive2 { name="ASAFE"; version="1.24.0"; sha256="1q4i33rw1qb8bnvkl06izl4nyl9lzgwy8rwrmvbrz1c384pmy8yj"; depends=[]; }; + ASEB = derive2 { name="ASEB"; version="1.42.0"; sha256="1kr6l2ma7wzy8i9dn86zx927yvx1l4bnkxhv97ra3sh5vr6m8ywa"; depends=[]; }; + ASGSCA = derive2 { name="ASGSCA"; version="1.32.0"; sha256="12wap8xbq6xl7p430yd9yy5kdhs15n7nmv2h3k9bsi0f4m6md02i"; depends=[MASS Matrix]; }; + ASICS = derive2 { name="ASICS"; version="2.14.0"; sha256="0c2b3gdza58vqhharhw8967p2w2knnrm5s2svvnnjbf67qbg45b7"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; + ASSET = derive2 { name="ASSET"; version="2.16.0"; sha256="13zwnjap4y0s3qqv10mv2i4mqan9nmkm2l29i448h1j3wwfq18j2"; depends=[MASS msm rmeta]; }; + ASSIGN = derive2 { name="ASSIGN"; version="1.34.0"; sha256="0y1j9j9g8mlrrxz8ggi45lb9gvdsmcq94c0pzj8y8lm7hmsmixwg"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; + ASURAT = derive2 { name="ASURAT"; version="1.2.0"; sha256="1n5wvdyf80c0yhw8mxzkawxk0bkvy3qysxb9vgw1pj75nrp7ml7i"; depends=[circlize cluster ComplexHeatmap plot3D Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ASpediaFI = derive2 { name="ASpediaFI"; version="1.11.0"; sha256="13jny6ca8hdf269z37baaggfs7jss00ln09apn42pj411g3p7nms"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; + ASpli = derive2 { name="ASpli"; version="2.8.0"; sha256="0gwp5ijpxjy6hd1090cmwbfrfac1qqrzxc06n1j89c0va7wm9l4k"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; + ATACCoGAPS = derive2 { name="ATACCoGAPS"; version="1.0.0"; sha256="1n389l4b17j6q36irpd3gbdn5hlfk47315rx30jmsiwyid17qm4j"; depends=[BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm10 chromVAR CoGAPS dplyr fgsea GeneOverlap GenomicFeatures GenomicRanges gplots gtools Homo_sapiens IRanges JASPAR2016 motifmatchr msigdbr Mus_musculus projectR rGREAT stringr TFBSTools tidyverse]; }; + ATACseqQC = derive2 { name="ATACseqQC"; version="1.22.0"; sha256="12ggi2dzf8qyzjrxprvk099f61yrabg2d84iqnjxzrn77v6z19b2"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; + ATACseqTFEA = derive2 { name="ATACseqTFEA"; version="1.0.1"; sha256="0p7cs8a6ywh4k80q3hjbh8gd3599209li8igzkilaa4z7gvhj0fi"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggrepel IRanges limma Matrix motifmatchr pracma Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; + AUCell = derive2 { name="AUCell"; version="1.20.2"; sha256="1qb13qd5xzgrpx6jlg3ll0ff5spz3y06ji31vvqzm759almg2w3s"; depends=[BiocGenerics data_table DelayedArray DelayedMatrixStats GSEABase Matrix mixtools R_utils shiny SummarizedExperiment]; }; + AWFisher = derive2 { name="AWFisher"; version="1.12.0"; sha256="1psbxxrwb6mk2jwjw963vwdczb3i5590rcm7hk43kpiw45i1q1j9"; depends=[edgeR limma]; }; + AffiXcan = derive2 { name="AffiXcan"; version="1.16.0"; sha256="1jsdl477qhsq3rpqvgdm7navr4izpppfkiw0fvlhxwspgp3fjs6c"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; + AffyCompatible = derive2 { name="AffyCompatible"; version="1.58.0"; sha256="1bg7iqasvfsgd9x3ykgpblqnz1q06g3ifmzj4jf2kn8kxj63wfbl"; depends=[Biostrings RCurl XML]; }; + AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.44.0"; sha256="1n6x2c0h6xmcll7mxq4n1y8ahqfmba8ppdcrjk9hf3nh5wngprkz"; depends=[affy]; }; + AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.48.0"; sha256="0q3hynyd4dhhh1a2b27y3rrshgvxfwv17k7yabh6g4pc12c33mf7"; depends=[affy affycoretools Biobase limma preprocessCore]; }; + AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.36.0"; sha256="0zn8pp4pl5wr957mf6agjpn61f9qpnjx0nbxb5wnbr40672x0263"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; + AlphaBeta = derive2 { name="AlphaBeta"; version="1.12.0"; sha256="000apg879li9wkbyrl8cm73z6h0xasqp41h9ir9hywy2v38rmc5b"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; + AlpsNMR = derive2 { name="AlpsNMR"; version="4.0.2"; sha256="1y4qqc6l8flv5ns4qwzjwmcykm6zcm4jg097mn8xyp7mnxymy7pl"; depends=[baseline BiocParallel dplyr fs future generics ggplot2 glue htmltools magrittr matrixStats mixOmics pcaPP purrr readxl reshape2 rlang rmarkdown scales signal speaq stringr tibble tidyr tidyselect vctrs]; }; + AnVIL = derive2 { name="AnVIL"; version="1.10.1"; sha256="0iqsffkrxv28g9cddx2w05f2dbscwxhh6bpizwa8xaxhvn5bcpsv"; depends=[BiocManager dplyr DT futile_logger htmltools httr jsonlite miniUI rapiclient rlang shiny tibble tidyr tidyselect]; }; + AnVILBilling = derive2 { name="AnVILBilling"; version="1.8.0"; sha256="13qcp2s012ai44dkddk71ga44y87jnl0vljyd93lj1dlh8nw7c00"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; + AnVILPublish = derive2 { name="AnVILPublish"; version="1.8.0"; sha256="1i5zf7pyrzi6v13gpscmdb5qdb5gknicc8fk9s9nmsl1wpj6wlsw"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; + Anaquin = derive2 { name="Anaquin"; version="2.22.0"; sha256="08y2syaacy15rxcf3x2r3906kfm58fkx7ainaqvy5inlc9f670j5"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; + AneuFinder = derive2 { name="AneuFinder"; version="1.26.0"; sha256="154cg63n7h9h5jkj00aqf0hzbmmjg16bzvvk50fyixwq0a4q1j00"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust reshape2 Rsamtools S4Vectors]; }; + AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.60.0"; sha256="1srv0jizmwgmsmgb9cfgy5nbgd3jsgxgzzax6wfsahckb5zihrqp"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; + AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.22.0"; sha256="0m16kfssxbblf03ykawkmqa038cl90prhb23k6y88g2hwm00wynk"; depends=[GenomicRanges lazyeval]; }; + AnnotationForge = derive2 { name="AnnotationForge"; version="1.40.0"; sha256="15shh8rmcx69g3zd256720vh0c3qbly5zrvwm463dws41cjla48x"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="3.6.0"; sha256="1hk02q6mwx49khbhydndfa1qry8ylhmwz2dff8845a510hm0di7n"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.28.0"; sha256="0mcx09kcxccw2gkf4c3w7sxgb7v3gwbvahvx9wgq8f93q85yzg95"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; + ArrayExpress = derive2 { name="ArrayExpress"; version="1.57.0"; sha256="1fzi951mjc4kbkkvlfvwlfrpfnjckkmw4xz4m5dapy1z2jkgp8w6"; depends=[Biobase limma oligo XML]; }; + ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.47.0"; sha256="0fndc7xifzj2wq8si8q8zjjkly5ckgr28jrm3m887s7kivbvjzvv"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; + AssessORF = derive2 { name="AssessORF"; version="1.16.0"; sha256="125qkjsjyxp6zk3nzfamakyfgm7wd7w9vv1vn7xyyylpqpa8rpml"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; + BAC = derive2 { name="BAC"; version="1.58.0"; sha256="00dkhns9n1x4wmlxjcw75h7iwwk37zlv1c2fi0g1mmsw1xvdjzp6"; depends=[]; }; + BADER = derive2 { name="BADER"; version="1.36.0"; sha256="1hkvmfik4m2yw5xg4k2g551l27i64blbsdvp1kmvvyix66p53hsr"; depends=[]; }; + BAGS = derive2 { name="BAGS"; version="2.38.0"; sha256="0rnaahbdqpgl666w9xlm6prrrnks2k6p83r625j1lcj2v533232r"; depends=[Biobase breastCancerVDX]; }; + BANDITS = derive2 { name="BANDITS"; version="1.14.0"; sha256="18xq8gg1j07gbbxy7r0cc34zwn40mh4fr39zzi8l3z0cymw73qs8"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; + BASiCS = derive2 { name="BASiCS"; version="2.10.2"; sha256="06mp74kchxj2gq0n4rgxfvsm2p92hwd0zy05zq5fnig8mkqkq8sq"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; + BASiCStan = derive2 { name="BASiCStan"; version="1.0.0"; sha256="1an4kiipb3y1xixynpka0k2pdsi7a4s6h2mw2yfnwab1q6qf97kj"; depends=[BASiCS BH glmGamPoi Rcpp RcppEigen RcppParallel rstan rstantools scran scuttle SingleCellExperiment StanHeaders SummarizedExperiment]; }; + BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.28.0"; sha256="01n9msbnr4x6hjlvz9z43lyrbxnmhi6bc655ir4cq0vizm1mk84m"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; + BCRANK = derive2 { name="BCRANK"; version="1.60.0"; sha256="01ibjaym2kyv4x0fwv8mk5mq550lm1pqgrq40spmyrgb4vnwkh0h"; depends=[Biostrings]; }; + BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.16.0"; sha256="0d73w5pcca6d4dscw12hwy823ls4xhvdyi2xbiixm9n0rx23wls1"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; + BEARscc = derive2 { name="BEARscc"; version="1.18.0"; sha256="1j430ijy2b2j5x1y276vya25pw0qrcl2q11smr394jf4b9hm60qr"; depends=[data_table ggplot2 SingleCellExperiment]; }; + BEAT = derive2 { name="BEAT"; version="1.36.0"; sha256="0b48ravaaqbqvw35bamalrjnp77gqf13rp11wpd86m9ghpjl4gr0"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; + BEclear = derive2 { name="BEclear"; version="2.14.0"; sha256="05znaj2fialxi937mhj2dlrm3v4j2wgqafcy78qrkz7xxn13pr01"; depends=[abind BiocParallel data_table dixonTest futile_logger ids Matrix Rcpp Rdpack]; }; + BGmix = derive2 { name="BGmix"; version="1.58.0"; sha256="0r4cxrjvf3qr5514lsw1s53h4by3djb9ipkz7bi979w343dn9xfx"; depends=[KernSmooth]; }; + BHC = derive2 { name="BHC"; version="1.50.0"; sha256="0ryd9lg8pywqlxj802y9jad5nxy40ivnzdq2ldldypwyalgk9ahm"; depends=[]; }; + BLMA = derive2 { name="BLMA"; version="1.22.0"; sha256="0jxxf4g0j5prarjq18ab435h963h1d7mlb4ssj2919lf98rhxl0r"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; + BOBaFIT = derive2 { name="BOBaFIT"; version="1.2.0"; sha256="0shv241jkzcyp1mydxpg6sjf74zxmc8dpsxdniw7c6arjfv4b39z"; depends=[dplyr GenomicRanges ggbio ggforce ggplot2 magrittr NbClust plyranges stringr tidyr]; }; + BPRMeth = derive2 { name="BPRMeth"; version="1.24.0"; sha256="0w97b34d6i0n4bvq8a63da1bnkmhhd2sclwhsixlacisgy5hdfls"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; + BRAIN = derive2 { name="BRAIN"; version="1.44.0"; sha256="1rp2aa7jigi8h3qa55a1pf5zj06a5fpyqxwpc92w8gb0flmmdbn8"; depends=[Biostrings lattice PolynomF]; }; + BRGenomics = derive2 { name="BRGenomics"; version="1.10.0"; sha256="1mdf8v2768vm1wfrcia9cs0biv51hybwa6nraddhccx25cnz1prj"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + BSgenome = derive2 { name="BSgenome"; version="1.66.1"; sha256="1gzpvajw5n3qmym3312qaks450sq3w456kj4gqwaabgpjxbq7frm"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; + BUMHMM = derive2 { name="BUMHMM"; version="1.22.0"; sha256="1llxj25bjq68963nvr4b1n84400w6qb2gaa8jv7if4w8kslv5wvf"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; + BUS = derive2 { name="BUS"; version="1.54.0"; sha256="1bv50vx4dyb1cz502nqknyss5vfh9cwnms65gcyrii5xydjxr1ch"; depends=[infotheo minet]; }; + BUScorrect = derive2 { name="BUScorrect"; version="1.16.0"; sha256="05a8sn7rd4d3qx46gr742aqgf0968ni2s238z0gxbg8sifjphii7"; depends=[gplots SummarizedExperiment]; }; + BUSpaRse = derive2 { name="BUSpaRse"; version="1.12.0"; sha256="1hnlgqd6igcpq6kfmj82v1m07ndq3nsx4iiv3j37gxy5pi367026"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; + BUSseq = derive2 { name="BUSseq"; version="1.4.0"; sha256="0ydryxgas192fsyvivwjjrghz9jgxnvaq3igchmwvl50yxnggmzb"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; + BaalChIP = derive2 { name="BaalChIP"; version="1.24.0"; sha256="16s67v6mkv14dkk1r7c50brm7198b84h87h1wrahmrrcnzq8pi0n"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; + BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.26.0"; sha256="0bsgdjchwsfc8aiwiacr454kw97dbymq6v450m1fx7hxmmpqz1sm"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.42.0"; sha256="07pqs0jkwcbxavc65sanvhvzc9spkk46bqnwz162f3pvrz15b5h7"; depends=[RCurl RJSONIO]; }; + Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.34.0"; sha256="1zzh7d9c319lfncz73i1mcldiinqfss0b2jl0nhm836ygksykc3x"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; + BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.26.0"; sha256="1yk4zpgwy5dcgimqp9w7hscvg2irgr281f8zv8rp576c8xbzqgqz"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; + BatchQC = derive2 { name="BatchQC"; version="1.26.0"; sha256="1rjqldr9vp8ppcwbclm8cvkpsncss31n449s6nsczmv517mjna1q"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; + BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.24.0"; sha256="1r4d3h6fvn946czpf81prqwycvkgmzlcypy8dl54diagvdp3dr9y"; depends=[Biobase]; }; + BayesSpace = derive2 { name="BayesSpace"; version="1.8.0"; sha256="1hqlr82fribkw9vs7fjwqr0impz7f5wfdm7q19ny17k8ald6mh21"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; + BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.50.0"; sha256="0309cvc9aq4nb06zysb7jvzd844pvw6jbjiqwhar6fg01cx255j0"; depends=[]; }; + BgeeCall = derive2 { name="BgeeCall"; version="1.14.0"; sha256="05w6b10vc4mmwdqnkcj7vnfigk03f03n776vqhlb38k0lx8k4hk3"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; + BgeeDB = derive2 { name="BgeeDB"; version="2.24.0"; sha256="14fja1dikzq60zjx1arcv1q16qd0hmibqjy0nbaivmk3zh16spkc"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; + BiFET = derive2 { name="BiFET"; version="1.18.0"; sha256="0awzq3i7ga6jsh7xgmrpzz8klx69p8cxj73p6h7ya43bgcr0iff0"; depends=[GenomicRanges poibin]; }; + BiGGR = derive2 { name="BiGGR"; version="1.34.0"; sha256="07b80qpkbas3x2yhndcm6vdkba0cpricyvnjf18dxklj5j612wfy"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; + BiRewire = derive2 { name="BiRewire"; version="3.30.0"; sha256="0nr40nm87qzbni3w0cik887csc899jh7j8z82i94v15fc30vfilh"; depends=[igraph Matrix Rtsne slam]; }; + BiSeq = derive2 { name="BiSeq"; version="1.38.0"; sha256="0k9s0l2whvlhb2zmp7119drb8nlv8nlmipvws42vb87xb9hg4a4g"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; + BicARE = derive2 { name="BicARE"; version="1.56.0"; sha256="1z7x30705a4ww9vdam2668pk064na5ispigqnaqy8zqvlfvp3c8d"; depends=[Biobase GSEABase multtest]; }; + BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.4.0"; sha256="01gazqcvw9z112wlcljmb83vxz3bns9wgbfsccr54h8c957ynpbq"; depends=[dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 Gviz matrixStats plyr rtracklayer S4Vectors tibble tidyr]; }; + BioCor = derive2 { name="BioCor"; version="1.22.0"; sha256="0a8xyrmarb2ja5zyvx5sndd67hylmwi29gpr5lwrzinww8w8b8w6"; depends=[BiocParallel GSEABase Matrix]; }; + BioMM = derive2 { name="BioMM"; version="1.14.0"; sha256="06c36lpbmcz0s8v6dsjbmlmisab3h02jx67ycwlnymfwzw1hq1cb"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; }; + BioMVCClass = derive2 { name="BioMVCClass"; version="1.66.0"; sha256="1xclmwxps7yvqnaw8kn6z4mlpx6v8xfzyly4cadsjaj2qm535xxk"; depends=[Biobase graph MVCClass Rgraphviz]; }; + BioNAR = derive2 { name="BioNAR"; version="1.0.0"; sha256="1z0ln7j4ack0pv8bzxjfrq6ncsnd0jif5s42njm94c7j408fj9kz"; depends=[AnnotationDbi clusterCons dplyr fgsea ggplot2 ggrepel GO_db igraph latex2exp org_Hs_eg_db poweRlaw Rdpack RSpectra rSpectral scales stringr synaptome_db WGCNA]; }; + BioNERO = derive2 { name="BioNERO"; version="1.6.0"; sha256="10nwgp8a9chn33p5k7cdp920rraiw187xfrylyd9bq010c7vp7xh"; depends=[BiocParallel ComplexHeatmap dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggrepel igraph intergraph matrixStats minet NetRep networkD3 patchwork RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; }; + BioNet = derive2 { name="BioNet"; version="1.58.0"; sha256="12c6m7dzwkdh4bk1c5xmzm5ajrsba7v62mag1f3rrpmrapdh6s0j"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; + BioNetStat = derive2 { name="BioNetStat"; version="1.18.0"; sha256="1h99d6gnqw5v9ha2169zfhw9cvxhyjgkf4zm8qj1i03h2cywapgv"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; + BioQC = derive2 { name="BioQC"; version="1.26.0"; sha256="1ssxsxdm8vmlrmvvdz5p98apd3xsal1h3ss8556g83kgw830zsxf"; depends=[Biobase edgeR Rcpp]; }; + BioTIP = derive2 { name="BioTIP"; version="1.12.0"; sha256="1n90n4vz0cwz8irwpmrkm9qcyvk5rssl2v6wrzny4zwhzjkmvlni"; depends=[cluster GenomicRanges igraph MASS psych scran stringr]; }; + Biobase = derive2 { name="Biobase"; version="2.58.0"; sha256="0rp541nphbcya6kbk1nzrrb05g5m6pxb3yqz5cj873di9vsqlyfv"; depends=[BiocGenerics]; }; + BiocBaseUtils = derive2 { name="BiocBaseUtils"; version="1.0.0"; sha256="0p6siidrx8q6qr36fc67hzi091m2zwik3zngj27yllbfz6sn5k69"; depends=[]; }; + BiocCheck = derive2 { name="BiocCheck"; version="1.34.2"; sha256="1zj43kbzvi2ws8c182fp6vn5r6iiqsr6p2iyy3k8n3ifm2acqw2h"; depends=[BiocManager biocViews codetools graph httr knitr stringdist]; }; + BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.10.0"; sha256="13l5shmiiv4wl9m5xnwzagjxqrchjg9znvcgf7hv8f263l2yc8qm"; depends=[dplyr httr memoise readr whisker]; }; + BiocFHIR = derive2 { name="BiocFHIR"; version="1.0.0"; sha256="1b0mychyv778cf2jmib15jpjmh83s4sjr69qrjgmv0c7kvv4msf7"; depends=[BiocBaseUtils DT graph igraph jsonlite shiny tidyr visNetwork]; }; + BiocFileCache = derive2 { name="BiocFileCache"; version="2.6.0"; sha256="0skrvmkm6ch8gbpdi4wr59zk5vxzxs7cyqvz3jhki9d8w492wylg"; depends=[curl DBI dbplyr dplyr filelock httr rappdirs RSQLite]; }; + BiocGenerics = derive2 { name="BiocGenerics"; version="0.44.0"; sha256="17dhr7vaph8dnvyklszyas7y8i64mxqxhnfhb6q3l47gq5if8645"; depends=[]; }; + BiocIO = derive2 { name="BiocIO"; version="1.8.0"; sha256="15d4xsn3k32q7lzcyxvs70f0jbh9fgwl3vi7xd6sqpggar12hh9f"; depends=[BiocGenerics S4Vectors]; }; + BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.16.0"; sha256="09f00rf5gwwlxxaycsciq4l53gjg5kjayx8xzhns2yf1fv297j9p"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; + BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.18.0"; sha256="1x4mzzjvjgcxg5xyxjib8r2n55hpf2vzcci0xkb7d8frakfncn9s"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.32.4"; sha256="1m4i27zx3ajwygwp38lrxf36rs575dkaxxc6jawpj1kzn7whi5ym"; depends=[BH codetools cpp11 futile_logger snow]; }; + BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.16.0"; sha256="1av7vnw6z9cw7j4d3vpi8mfs5h4pn4yr2wc8ybg7ad1d686ah845"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rorcid rvest stringr tibble xml2]; }; + BiocSet = derive2 { name="BiocSet"; version="1.12.0"; sha256="197cy5gdlvac7jqwb4dm4dbqfms2nvc3paqs75nsg9mpp1h5z8l8"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; + BiocSingular = derive2 { name="BiocSingular"; version="1.14.0"; sha256="041izymcifvi0pa97fh5000bwlyl0mdk9003i5bbvlld6mbbv2kk"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; + BiocSklearn = derive2 { name="BiocSklearn"; version="1.20.0"; sha256="049j8rq17k84mw4pa9zgcn6814bdq4m5xcrxp730j183h8wly742"; depends=[basilisk basilisk_utils reticulate SummarizedExperiment]; }; + BiocStyle = derive2 { name="BiocStyle"; version="2.26.0"; sha256="092hpmyhra755j32vc8w2l6xqwg09jm8apnk5rvxi1cm5034yvsl"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; + BiocVersion = derive2 { name="BiocVersion"; version="3.16.0"; sha256="1djp23y131dyx4g22f9r7an177bq0mky94bvpqvc8b14166g0ynw"; depends=[]; }; + BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.24.0"; sha256="00cy5lqmfap57bm2s00bis9ddci2lv1lrp0mk5ydgx061p4ym29i"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; + Biostrings = derive2 { name="Biostrings"; version="2.66.0"; sha256="1z86s8ncl91pxcjnv8fwvgwjjnd384dn5paylwyymrigph4ca4kk"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; + BitSeq = derive2 { name="BitSeq"; version="1.41.0"; sha256="185cssrvaw2x0r3y5fqnfqm31924ccwg33qpj3v8ywrh3x7qn22p"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; }; + BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.6.0"; sha256="01hxz2y906lx848pw64j78bwzm5yx9cjw0yshicnv0n2kbw1w53g"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; + BrainSABER = derive2 { name="BrainSABER"; version="1.8.0"; sha256="1nxcjvaip7pp387bhdc2pmjai3chib1n63ig0cslhppzzjp2y6jd"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors shiny SummarizedExperiment]; }; + BridgeDbR = derive2 { name="BridgeDbR"; version="2.8.0"; sha256="03zpgd836c4qdbp8fmz0yb20pdyszs2pra9ih3b68pv4b6rx25jz"; depends=[curl rJava]; }; + BrowserViz = derive2 { name="BrowserViz"; version="2.20.0"; sha256="010hmaba81swqsv0nqzs3ybg31n0b9zyjgxgp270az4bkrw59gjs"; depends=[BiocGenerics httpuv jsonlite]; }; + BubbleTree = derive2 { name="BubbleTree"; version="2.28.0"; sha256="0rw7127hgpzw7akga8daw6gzlqfamx347l53v6sx05xdgn451097"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; + BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.62.0"; sha256="08b8pm1vkwvkbv3dqldb9h1n7aiwih7dw66w8ag1xjp0sn9v9d7d"; depends=[]; }; + BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.62.0"; sha256="1b0c0dick3gxdlrfjgx4dpgaqry5rd9gmpvdinfs94f9bfp89xyf"; depends=[BufferedMatrix]; }; + BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.6.0"; sha256="1w7vfmpjhm2jdykzfqkfwz0hg52c3h1d3kq3j0mh340l0pc0bdzx"; depends=[IRanges Matrix S4Vectors]; }; + CAEN = derive2 { name="CAEN"; version="1.6.0"; sha256="04zdsvkdb532l9bnm14p5ycq4wjqgvvjsr9cq6gwsa87ly1wf72l"; depends=[PoiClaClu SummarizedExperiment]; }; + CAFE = derive2 { name="CAFE"; version="1.34.0"; sha256="03riynxr0gqf5qapplr78sffbdv52x3vp6x5yjzai09xhky9qa7s"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; + CAGEfightR = derive2 { name="CAGEfightR"; version="1.18.0"; sha256="1iw8bf7dcgg3vd5l29pcrvbrx3ksc3dlp5nbhcfcqp5mgr65j4ny"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; + CAGEr = derive2 { name="CAGEr"; version="2.4.0"; sha256="1lcajai32pnnjv4yp6flblv37a0f54mz4sxv6jljpgw6iyfy49p0"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; + CAMERA = derive2 { name="CAMERA"; version="1.54.0"; sha256="17ygir00xjjxwlgmlxm0sw5sf645fxabjdziw4ja1ia641cpd6mm"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; + CARNIVAL = derive2 { name="CARNIVAL"; version="2.8.0"; sha256="0qdydrrdim99aggm001380r8g6vny4wxb6kx2dbhk7b283whx0q3"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr tibble tidyr]; }; + CATALYST = derive2 { name="CATALYST"; version="1.22.0"; sha256="0n3x5w074x5hhgdf2qa0pkma4vrjwrcgjna7hx0az6ixkgpbkrpv"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + CBEA = derive2 { name="CBEA"; version="1.2.0"; sha256="0nycc7xql3f589pwdzw19pmvbhz3zxa88dkdq0746di9agn6wfdd"; depends=[BiocParallel BiocSet dplyr fitdistrplus generics glue goftest lmom magrittr mixtools Rcpp rlang SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; + CCPROMISE = derive2 { name="CCPROMISE"; version="1.24.0"; sha256="1iwvmw7k64n41qggxjxk3jbhrhpdnwfgn6vbm3cy467kpfzbzrzg"; depends=[Biobase CCP GSEABase PROMISE]; }; + CEMiTool = derive2 { name="CEMiTool"; version="1.22.0"; sha256="15dm4ajhnf7wv1cs6kfpp4sxfqyl0x11d1bzjagwxk7c911p4a8x"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; + CFAssay = derive2 { name="CFAssay"; version="1.32.0"; sha256="0lm7281d7gvdlkk35195zi2kjs0xj7jnr3gwkjgrvn6qhi0dk2vr"; depends=[]; }; + CGEN = derive2 { name="CGEN"; version="3.34.1"; sha256="12xnnnllpkgxi7vl8x97ib5mldh2b2kh66klhm1hkk0yfj3nrax8"; depends=[mvtnorm survival]; }; + CGHbase = derive2 { name="CGHbase"; version="1.58.0"; sha256="01n1z525h4h6yr3jfalgjg2g6lhd77sc3n33q0485x7l6xqv1dvp"; depends=[Biobase marray]; }; + CGHcall = derive2 { name="CGHcall"; version="2.60.0"; sha256="0860w2vf662qqii09pjdx85yl346jcldxiikhbwv0vg86blwb2g2"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; + CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.52.0"; sha256="08s3mdsaqv92f6mjj4mg1m7b13zpfm7c144mv754pnpfay2slw88"; depends=[Biobase CGHbase CGHcall]; }; + CGHregions = derive2 { name="CGHregions"; version="1.56.0"; sha256="1r6zi99jfq14jgw4v7nvad2fans0nd08xyg03qmc1j37hsnac769"; depends=[Biobase CGHbase]; }; + CHETAH = derive2 { name="CHETAH"; version="1.14.0"; sha256="0cizc0i5gqbn12kd4l5ym35w3k2ydqf0nmdhn7p3486ivp81f5rq"; depends=[bioDist corrplot cowplot dendextend ggplot2 pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; + CHRONOS = derive2 { name="CHRONOS"; version="1.26.0"; sha256="0akw9l0l23kc18d9m5sgfcsnc22py07k77l0wqikpsyjzvvj94aw"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; + CIMICE = derive2 { name="CIMICE"; version="1.6.0"; sha256="0w3rx643ing2i1b71fhcmqm9pbrw7q206lk7ncml3gaaw13lf6hc"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; }; + CINdex = derive2 { name="CINdex"; version="1.26.0"; sha256="186akmq5s81849pa56f3cqdacrmip2h9i0n67qkv9jnxk1l3h2x3"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; + CMA = derive2 { name="CMA"; version="1.56.0"; sha256="13qdhg5w1yga5sb4vack2srx5ly126g740wbxb55cg1kyqnzs1pd"; depends=[Biobase]; }; + CNAnorm = derive2 { name="CNAnorm"; version="1.44.1"; sha256="1f7y609q007mrjjwrs2q26yfgafaydim0van3v6p42x20k0n30y8"; depends=[DNAcopy]; }; + CNEr = derive2 { name="CNEr"; version="1.34.0"; sha256="15y27ca14fdhn2prqgkyikff7p7490xn0bp2c7cnwhw173mm1syw"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; + CNORdt = derive2 { name="CNORdt"; version="1.40.0"; sha256="0ybxps1dnl7v7p68vkxqjr7f7zbmaqnh9x2gq1vzhcgzv767p1jz"; depends=[abind CellNOptR]; }; + CNORfeeder = derive2 { name="CNORfeeder"; version="1.38.0"; sha256="0y8wmm4sb28k4hk9cc59wqk1im79z13ahm232dcqh78772cw5w0h"; depends=[CellNOptR graph]; }; + CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.40.0"; sha256="1d5ckcmj9dzxi5qxny0yqb6ygh0aqxfm31ccnr38awr9y2ysp9n1"; depends=[CellNOptR nloptr]; }; + CNORode = derive2 { name="CNORode"; version="1.40.0"; sha256="1f1699gwfvwsqmv7154h44jli5i49y8skha7p8mvawxm1cr86mg0"; depends=[CellNOptR genalg knitr]; }; + CNTools = derive2 { name="CNTools"; version="1.54.0"; sha256="18rl79i66z8d3addinp76krnyp9hzvprrihrksvcjkvrrl14adaz"; depends=[genefilter]; }; + CNVMetrics = derive2 { name="CNVMetrics"; version="1.2.0"; sha256="11i47ml2y5s8adh3qysasjl8b3w4xhg5h7v9rcdmd1hysjl4d4hi"; depends=[BiocParallel GenomicRanges gridExtra IRanges magrittr pheatmap S4Vectors]; }; + CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.30.0"; sha256="02k6bbzaj7q87nsg9zqda8dz44q3wshsps5pzm2764gxcwn4sz0z"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; + CNVRanger = derive2 { name="CNVRanger"; version="1.14.0"; sha256="1if6k9iakrvq0fw6j2xpd26l13ikkpni8px3w76c9z0wsvbjf0cc"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; + CNVfilteR = derive2 { name="CNVfilteR"; version="1.12.1"; sha256="0jkd65ncsbgwrrg0xs8ycj2lm9ailrayqqd6a453sbhx74gjsnyy"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; + CNVgears = derive2 { name="CNVgears"; version="1.6.0"; sha256="0gqw8l7pswamjm4j1jr8ri1rpf31szlx9ba6b99j3iypisxq1r1r"; depends=[data_table ggplot2]; }; + CNViz = derive2 { name="CNViz"; version="1.6.0"; sha256="1nm8k4ry8p6k8cb6bqi6dyffi48fyhv1gq1277cz1nys31y0pdnv"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; + CNVrd2 = derive2 { name="CNVrd2"; version="1.36.0"; sha256="0jr9m08ip17l9w9i62nqdv13p5f3s7n0zyj4y3vy671s6c1syfiv"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; + COCOA = derive2 { name="COCOA"; version="2.12.0"; sha256="01879lxdzxbg77sd5r8rw59kaa9s5jrsfnd2na68hsv41vhs64xf"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; + CODEX = derive2 { name="CODEX"; version="1.30.0"; sha256="1wrxzdk0ldkb2svgi84gvmkg97m3fv71937harzhmwhfwbk2mlc6"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; + COHCAP = derive2 { name="COHCAP"; version="1.44.0"; sha256="0nmnvnz8qli5xxzdnps0ndyjniixd4qpm8kbigmyqi0zviha588i"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; + COMPASS = derive2 { name="COMPASS"; version="1.36.0"; sha256="16wc5cipsl37707v1ffqpr55dks0m9ygv5a8v2llgdjd176dz1pd"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; + CONFESS = derive2 { name="CONFESS"; version="1.26.0"; sha256="10yz0nwssgak0gndw9py5yksdq1syb7dfa33kvkhf5ljwyxf955c"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; + CONSTANd = derive2 { name="CONSTANd"; version="1.6.0"; sha256="1mkzmjqsm9kqlabw50d8jn0jqx2iad1wn10il4j473bhamanwqg4"; depends=[]; }; + CORREP = derive2 { name="CORREP"; version="1.64.0"; sha256="07pr5v8sqzlvag1yapaz01pl54c8ab1gdq2hinhwv2kiyyxpkq11"; depends=[e1071]; }; + COSNet = derive2 { name="COSNet"; version="1.32.0"; sha256="1w1rh8c7nwxwi9szkij1k675dp0rg0li2ppzskkwpxm6vddyspm8"; depends=[]; }; + COTAN = derive2 { name="COTAN"; version="1.2.0"; sha256="1i19p2a3c1z7j4fc88k2ynvk7siwbl320jhlnm2b3giim7rs9xp9"; depends=[circlize ComplexHeatmap dplyr ggplot2 ggrepel irlba Matrix Rfast rlang scales tibble tidyr]; }; + CRISPRseek = derive2 { name="CRISPRseek"; version="1.38.0"; sha256="1658awsdc1qqm3qss3h8cbnapahn9rd476rhfsrckcq7gdqqg69h"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; + CRImage = derive2 { name="CRImage"; version="1.46.0"; sha256="0m097an8v06nx3alyj1gxz6i6g33ryrk1wc6pxia9kdb11rwzwkq"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; + CSAR = derive2 { name="CSAR"; version="1.50.0"; sha256="09js7lh1ga8l3kfkqc2vzrg83r3jckhcr5fdx1078sp2rc1dpv2y"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + CSSP = derive2 { name="CSSP"; version="1.36.0"; sha256="1hnpg6ba73h5r83g8ziiwcai8blan5piir8n1r7rnf6ixr20f352"; depends=[]; }; + CSSQ = derive2 { name="CSSQ"; version="1.10.0"; sha256="11msiwpk2swb5ijs59adp794fa50c42v6sb2i4hgpiayqfbmiiig"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + CTDquerier = derive2 { name="CTDquerier"; version="2.6.0"; sha256="15p4fb3p1i3i2fy0n3qz8p9psikhdfk59wdypn0rivmp0g35rvdi"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; + CTSV = derive2 { name="CTSV"; version="1.0.0"; sha256="11simigbrqlmr4b3ywi83zb6jc4f21ava9vyyk5y4qfndn16lijh"; depends=[BiocParallel knitr pscl qvalue SpatialExperiment SummarizedExperiment]; }; + CancerInSilico = derive2 { name="CancerInSilico"; version="2.18.0"; sha256="0szbz88wnr3dbf7k9bhihv6hkr29gsp9vrllr201wx5qfzl2gncy"; depends=[BH Rcpp]; }; + CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.24.0"; sha256="1dp7h2bgpiy9ywv4l9gii1pkm1z7zsilpadb3l2piyd3r747dwy1"; depends=[cluster ConsensusClusterPlus impute limma NMF sigclust survival]; }; + Cardinal = derive2 { name="Cardinal"; version="3.0.1"; sha256="0n8760dfwc5qna6v4b7sxwr20rk10pj2alp259ypgmpb2ryk01sl"; depends=[Biobase BiocGenerics BiocParallel EBImage irlba magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; + Category = derive2 { name="Category"; version="2.64.0"; sha256="1j62b3ycvb27p80k1a1qj4pdf8cjynf5fkj65v74c3l1hgl9qxnh"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; + CausalR = derive2 { name="CausalR"; version="1.30.0"; sha256="0nxiwnln696v3hw1m19whpajzqfb6y0c9dn3v154l7n84v0j5wd2"; depends=[igraph]; }; + CeTF = derive2 { name="CeTF"; version="1.9.0"; sha256="07hzw8ynywfyvac3xm7llvs67mnlixjw5y9rz3sfvbfssnz5ihh2"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; + CellBarcode = derive2 { name="CellBarcode"; version="1.4.0"; sha256="0kiariwn252ri27gsdy7924i98akx8bmpgr76f7s395hrhlrc36d"; depends=[BH Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp S4Vectors seqinr ShortRead stringr zlibbioc]; }; + CellBench = derive2 { name="CellBench"; version="1.14.0"; sha256="0p5bs7v5ya31z0hxaw52ccx8qv8yq86q6k0qcd2z20fia0f9471v"; depends=[BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; + CellMapper = derive2 { name="CellMapper"; version="1.24.0"; sha256="172bmzk5g18slvym5w557c9wy7irb0mp81kanwn1csk0va3cl9pc"; depends=[S4Vectors]; }; + CellMixS = derive2 { name="CellMixS"; version="1.14.0"; sha256="1nl39wrrfp7kfxmm0m2n1x9rgwyykxpkmbpgvipgs5rp818ghalg"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; + CellNOptR = derive2 { name="CellNOptR"; version="1.44.0"; sha256="1ym74v3kq6656vvd02y1m2czil9mgdr1bay3q6zlgcygmllq8n14"; depends=[ggplot2 graph igraph RBGL RCurl Rgraphviz rmarkdown stringi stringr XML]; }; + CellScore = derive2 { name="CellScore"; version="1.18.0"; sha256="1790p98zhjl3lpm4xcn3rjwizmzgpylzk7c0ndn5hlrz5ck3qmbm"; depends=[Biobase gplots lsa RColorBrewer squash]; }; + CellTrails = derive2 { name="CellTrails"; version="1.16.0"; sha256="02jwp5ypp32hs8sxgi8ifv62sadlpgd8g8i6i03yahwz7pd8d3ry"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; + CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.8.0"; sha256="144d1h73x4gbymjka5a4i5nvqj7fmmhw9kdq1a9qmf0bah2xwcv0"; depends=[BiocGenerics Biostrings dplyr forcats generics glue Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; + CelliD = derive2 { name="CelliD"; version="1.6.0"; sha256="1qg14d4fv2wbwcs0gsw0vvn3lny9sdk3k1ybxci8sd847r7jrahm"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; + Cepo = derive2 { name="Cepo"; version="1.4.0"; sha256="07ymk3kw0r8sdk3fyssh93ap3fx2xq5mhznksdvi2i1k4rv2pc07"; depends=[BiocParallel DelayedArray DelayedMatrixStats dplyr ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CexoR = derive2 { name="CexoR"; version="1.36.0"; sha256="0bd3kd3d67h3wbp7wbccwqppm3pfmvb45k4k13w772mawzr2k6ja"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + ChAMP = derive2 { name="ChAMP"; version="2.28.0"; sha256="10ss0a3miqrx92vy1r1h5rv3mnjn4iyl32q86s0x59d3fvqp2cx1"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; + ChIC = derive2 { name="ChIC"; version="1.18.0"; sha256="1z00d2952qwscx5ljr7zvxm6kydmk188iiky0zprxl9hzp69iv17"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors]; }; + ChIPComp = derive2 { name="ChIPComp"; version="1.28.0"; sha256="1wnc7zrnnxk3nlk2l9y4il75dzirndp4vs5ivxn5rzqr6p7h4bhw"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; + ChIPQC = derive2 { name="ChIPQC"; version="1.34.0"; sha256="1kkrr0i30m1mnp274db2q9rwrgsrc4659smck62r07k8dympdhk8"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; + ChIPXpress = derive2 { name="ChIPXpress"; version="1.42.0"; sha256="06yg5fvq0z63iz9jfpjl4bd5bzppz8ai9j3am1m5h1632xdlp3bh"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; + ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.20.0"; sha256="04gdhzvhqnq2w0dcx2153bkg2ywrmz2zjg323sajl1gm32dn036g"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RColorBrewer RcppRoll ROCR rtracklayer S4Vectors]; }; + ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.22.0"; sha256="0k4vbdwpp7z06fzjgqnmrx2yllayc0z2baj26bh4vji5vb48k9ik"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.32.0"; sha256="13syh3mvqpaqgfndcrwdmn7815f4myxhzjga9a9q3lspci25rvy6"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; + ChIPseeker = derive2 { name="ChIPseeker"; version="1.34.1"; sha256="0jr9mc79di0r3xrc7m27vwk85qa4fpcwp4nb77pr9s6jbv23773r"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + ChIPseqR = derive2 { name="ChIPseqR"; version="1.52.0"; sha256="0h4bb676s8xz57pcwp421563fxapqpkxisikrjk6z5vb8c5az7vi"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; + ChIPsim = derive2 { name="ChIPsim"; version="1.52.0"; sha256="1g0i15lijpl0wrzcr9difblh6zi4ba1p2c5kvdgqjjnw5gc7c09i"; depends=[Biostrings IRanges ShortRead XVector]; }; + ChemmineOB = derive2 { name="ChemmineOB"; version="1.36.0"; sha256="0jm2igxkxzyfl6phxa1305cddfgslbrydbr26ngwy5403vhnfg1w"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; + ChemmineR = derive2 { name="ChemmineR"; version="3.50.0"; sha256="0rk4ydanqxjh5yj0m9qlj06a12j7rkx9gxv6x7zpiyvnscahw63i"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; + Chicago = derive2 { name="Chicago"; version="1.26.0"; sha256="1b24iiy6d5kzpixgpdkg4s1cb50jdrmgn9sjgvwr1qinckwz6zdn"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; + ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.52.0"; sha256="1kfm73kma072g2hd4r65d7nq0ydnar7c63j658vjxi2r05yr6iaw"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; + ChromSCape = derive2 { name="ChromSCape"; version="1.8.0"; sha256="0zvvc826zqi88gr2m4lzgmc2mgh83f9vc6f033l77a367v7p5cnk"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges gggenes ggplot2 ggrepel gridExtra IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist stringr SummarizedExperiment tibble tidyr umap viridis]; }; + CircSeqAlignTk = derive2 { name="CircSeqAlignTk"; version="1.0.0"; sha256="0jc63nmlkvx829h85fk8wh9sma200hv0g3a94slxhdiidnjph7l6"; depends=[BiocGenerics Biostrings dplyr ggplot2 IRanges magrittr Rbowtie2 Rhisat2 rlang Rsamtools S4Vectors ShortRead tidyr]; }; + CiteFuse = derive2 { name="CiteFuse"; version="1.10.0"; sha256="04zf5bvwqgr8rk4mzdglrbys62qsqgm4d5yzn2gpyk74qb8jcbir"; depends=[cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap randomForest reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; + ClassifyR = derive2 { name="ClassifyR"; version="3.2.6"; sha256="0rbb0z1xixbgiig56n67cjqcnwgg3yj82bwg6zla5zm7i2mi72dc"; depends=[BiocParallel dplyr genefilter generics MultiAssayExperiment ranger rlang S4Vectors survival tidyr]; }; + Clomial = derive2 { name="Clomial"; version="1.34.0"; sha256="03xbkszrp760d7qzfflzrcj9hq42r1w2692nzsdzs7c5d4pcavss"; depends=[matrixStats permute]; }; + Clonality = derive2 { name="Clonality"; version="1.46.0"; sha256="13fnw8l11gzvsn95kcskd0q064nay04x9q12h7wb2n9wbmi7s4av"; depends=[DNAcopy]; }; + CluMSID = derive2 { name="CluMSID"; version="1.14.0"; sha256="0lgajn2zyanz8fjq9rmhc6pmg3f32zsb6n9b4n60kx2wva3jmna9"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; + ClusterJudge = derive2 { name="ClusterJudge"; version="1.20.0"; sha256="0qbd2hq6phs6vkvz63xdr3xmil9fngaphh3a5s452p0sk8ijzrj2"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; + ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.26.0"; sha256="1sa5nddssny2nhylm0560nm4bddn8irckanr0fj0s0klsmssrsl2"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; + CoCiteStats = derive2 { name="CoCiteStats"; version="1.70.0"; sha256="11p7gz6bzc8znjqhpa0wj8fyh2f1xi0f53vfihivl7ladyml19lz"; depends=[AnnotationDbi org_Hs_eg_db]; }; + CoGAPS = derive2 { name="CoGAPS"; version="3.18.0"; sha256="0cc9anznijn3klfkp6hiqzwxwq3la9k5k6c88h37x9zh9r7sdp4a"; depends=[BH BiocParallel cluster gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CoRegNet = derive2 { name="CoRegNet"; version="1.36.0"; sha256="0z9b7azardbfqkwdn5bd2wnja6xzxm9qfhpcaar9xp45mz0a34h7"; depends=[arules igraph shiny]; }; + Cogito = derive2 { name="Cogito"; version="1.4.0"; sha256="14xaf6kfxj46fp4v1d35am700r5isn1h026ai3y85l5ilrhb4kky"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + ComPrAn = derive2 { name="ComPrAn"; version="1.6.0"; sha256="1zn93iwmayrqwsk94bcswm295ihn0v3yksliq7w92y6abb4vx4yh"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; + ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.14.0"; sha256="1mf0h2j31m57jd3s1sj8ijn9wdgbg452d79drdkxypxqvpm7b927"; depends=[circlize clue codetools colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; + CompoundDb = derive2 { name="CompoundDb"; version="1.2.1"; sha256="0f7jj0bphgjjba7dgrmgar6l3zv8ln3dsaq2adcy22hkryfidm55"; depends=[AnnotationFilter Biobase BiocGenerics ChemmineR DBI dbplyr dplyr IRanges jsonlite MetaboCoreUtils MsCoreUtils ProtGenerics RSQLite S4Vectors Spectra tibble xml2]; }; + ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.62.0"; sha256="15cz3bbl21vzf5xn5xb791sy2yvzir7h4fdqm0a5anhbh8jg0iaq"; depends=[ALL Biobase cluster]; }; + CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.14.0"; sha256="1pbi17z8fmyr0n8yvvpa5lw36pqb4mv6apcakdq39s7wzzczgpms"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; + CopywriteR = derive2 { name="CopywriteR"; version="2.29.0"; sha256="1h4cyrjwdazgk49yzi9lvya8bfz9r4cpq19hyzikvc81ia8zdxs6"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; + CoreGx = derive2 { name="CoreGx"; version="2.2.0"; sha256="0j10crmgsi0sm3cx27qbnl8d9yfn9w4wpkqaqdizpj3g5bby3knd"; depends=[bench Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; + Cormotif = derive2 { name="Cormotif"; version="1.44.0"; sha256="1wbqycmmi307z61fwi2smaavh9rwjd65ifbrwkb2wlhffnnp0852"; depends=[affy limma]; }; + CoverageView = derive2 { name="CoverageView"; version="1.36.0"; sha256="0cqvwp0ybxgnk9kif3ly780v23pwv4cyh46kk47gxcxqqkjv36ld"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + CrispRVariants = derive2 { name="CrispRVariants"; version="1.26.0"; sha256="184bn5gyjj0s7wpnyrqxrsh47f7f9w020p5fbhbi48nnks38j7ca"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; + CyTOFpower = derive2 { name="CyTOFpower"; version="1.4.0"; sha256="0g3629xi5hvkds2ixibr9p2ipjyr341nksafh38ap2w870whc31j"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; + CytoDx = derive2 { name="CytoDx"; version="1.18.0"; sha256="1w5xy40wpyw6fj42zj2zf79r0kkdhn6h7wxzilh1dhnqkd0k8ay1"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; + CytoGLMM = derive2 { name="CytoGLMM"; version="1.6.0"; sha256="1vvzw440blicfmdidr1sh8wiyfwmgrhmvazikm4f7g8jcw0cn9dm"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang speedglm stringr strucchange tibble tidyr]; }; + CytoML = derive2 { name="CytoML"; version="2.10.0"; sha256="105vdmwwglknwk7x7cb6b2jf6bngbxsly0ymjf8175p2lfv98jsa"; depends=[BH Biobase cpp11 cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite openCyto RBGL Rgraphviz Rhdf5lib RProtoBufLib tibble XML yaml]; }; + DAMEfinder = derive2 { name="DAMEfinder"; version="1.10.1"; sha256="1cgykb70mxnhilwwp1jr4dr523zvjxpix173s4ldfh49064gzwc1"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + DAPAR = derive2 { name="DAPAR"; version="1.30.2"; sha256="13lhckx9nk1av23y0agkscdsqbb46q64h1s4mwm6846kd88w6rvv"; depends=[Biobase DAPARdata foreach highcharter MSnbase]; }; + DART = derive2 { name="DART"; version="1.46.0"; sha256="08nmnnvz4iy70jsd0cnp41mzh2l9mccxnf62lbrhm95kxpsyaxvj"; depends=[igraph]; }; + DECIPHER = derive2 { name="DECIPHER"; version="2.26.0"; sha256="01hzxd5f5v2kspx5jd7l21bn87cfgm9aah3zd4d6kyxv98h5a3n1"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; + DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.18.0"; sha256="12gw9b0gdwyih51j2gzay6vxhycgc52n8svd0slv6wsbw5rc19lh"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; + DEFormats = derive2 { name="DEFormats"; version="1.26.0"; sha256="1mcjwck06akl8zm6bkrcjqvqrfdzrcd59qvnxw5iri46i8vd7jac"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; + DEGraph = derive2 { name="DEGraph"; version="1.50.0"; sha256="1g0hbkwr0fwgy9zryn3bmp1lfqpplqh3489bb1z7w12sydphi5ik"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; + DEGreport = derive2 { name="DEGreport"; version="1.34.0"; sha256="0i75hdainn9sppvix2j2m0faprq1ajdkjm8bl2h1hxq8s7djmq6c"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; + DEGseq = derive2 { name="DEGseq"; version="1.52.0"; sha256="15x3hb767j1s9snx3zk2vbyz3nvb33gsilpkidcncswj140h9cr6"; depends=[qvalue]; }; + DEP = derive2 { name="DEP"; version="1.20.0"; sha256="13c1g4dqbrvw1cjfgxjgc5rwp5zvfrh5sghjlpzssc0l5m5y5c7s"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; + DEScan2 = derive2 { name="DEScan2"; version="1.18.0"; sha256="0an41nr2xy3c2f5fnh6krkbyvs8w7dx1828yv1anb6d23lnqbz66"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; + DESeq2 = derive2 { name="DESeq2"; version="1.38.1"; sha256="0xp3rfhwn8k1bqzqnjzjqlaq8lqyad7kqjhb29vkbxgzjvafvxmk"; depends=[Biobase BiocGenerics BiocParallel geneplotter GenomicRanges ggplot2 IRanges locfit matrixStats Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + DEWSeq = derive2 { name="DEWSeq"; version="1.12.0"; sha256="0y3v46ib9g581mkmhjr8avqj1lw2kgn9wdgylpggfvbv9wfyjkwc"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; + DEXSeq = derive2 { name="DEXSeq"; version="1.44.0"; sha256="01728hag1c5fh4n0v57k1p9ss5rqgckab4cnj5flp750myi1fbps"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; + DEqMS = derive2 { name="DEqMS"; version="1.16.0"; sha256="0v0jaynssmf8pyyjkdr3yg5p7y6zpjikwl5hdv2k7i52lnimr2r0"; depends=[ggplot2 limma matrixStats]; }; + DEsingle = derive2 { name="DEsingle"; version="1.18.0"; sha256="1644cq4ryzjw2q8y8jz4pyzs4wd0nsm5kny6s5spfg7xx543qaap"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; + DEsubs = derive2 { name="DEsubs"; version="1.24.0"; sha256="0z2ghrmnr4cmzw5vrqjf351p09vprir9kwwish65byifw4s65rv9"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; + DExMA = derive2 { name="DExMA"; version="1.6.0"; sha256="04j5h3ijmhzkgs02r0vsq3p00i4ydcnnis4kn1a69bp3x1bnv0n9"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr RColorBrewer scales snpStats sva swamp]; }; + DFP = derive2 { name="DFP"; version="1.56.0"; sha256="1pkg4461ib1iplcrlwkwrqzdzqixj2rhwwfkhjw87z4rx04hz3gf"; depends=[Biobase]; }; + DIAlignR = derive2 { name="DIAlignR"; version="2.6.0"; sha256="04kpdab8h0krxqzsxl3sb1gsxqwrrdpsn7irgdpns8qqjlzcbzv5"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; + DMCFB = derive2 { name="DMCFB"; version="1.12.0"; sha256="00j362frx70vj326xjppkzfd36mvfq3ym58dnckz3c0jb2dxv3wr"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; + DMCHMM = derive2 { name="DMCHMM"; version="1.20.0"; sha256="1cf5i3ikn81qw0s3kbx2yl15fmgwal22yqpys8wya8pd2agbi4lj"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; + DMRScan = derive2 { name="DMRScan"; version="1.20.0"; sha256="1mx0kk1rbn0mkk94mm1a7mk64ia315fvwwb34adyslmyq5gq93i5"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; + DMRcaller = derive2 { name="DMRcaller"; version="1.30.0"; sha256="03d7rl5z1pxdwxya53mkf8a8n9jzp8rb8awhfhfd22dgdf2l327h"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; + DMRcate = derive2 { name="DMRcate"; version="2.12.0"; sha256="0iphlsbam5fcxbj5j0cmqk3wz5ykwz0mvk3qbrhzxbpf2h4w2qib"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; + DMRforPairs = derive2 { name="DMRforPairs"; version="1.34.0"; sha256="1amrbmijqv0w96qc813abl12xr3sz8a92gfjwg7zm7l7dz2gjss9"; depends=[GenomicRanges Gviz R2HTML]; }; + DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.14.0"; sha256="1kjfpysf70lxc2sw0ggrnir91d6kl9gvc6vhx3ivzxah92zvp643"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; + DNABarcodes = derive2 { name="DNABarcodes"; version="1.28.0"; sha256="18sivwzl8gk52dnhwls0i4imw78rkjlwbfrcaas1i53q0bmw15i5"; depends=[BH Matrix Rcpp]; }; + DNAcopy = derive2 { name="DNAcopy"; version="1.72.1"; sha256="1y2qnagjrbjxn4xglv2sxr6fallkbmbms8fq9icv27pm5030y4xz"; depends=[]; }; + DNAfusion = derive2 { name="DNAfusion"; version="1.0.0"; sha256="1b1k5gs1rfk02p9j7xl186ynvsxax8sc2l9r8vwr53w37x3fzh43"; depends=[bamsignals BiocBaseUtils GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; + DNAshapeR = derive2 { name="DNAshapeR"; version="1.26.0"; sha256="0cj1nff3kn0d5djddapn37gi47739c69r61wp9v3bcvwcvq6nlqa"; depends=[Biostrings fields GenomicRanges Rcpp]; }; + DOSE = derive2 { name="DOSE"; version="3.24.2"; sha256="0scp6sgb1iwwfh7gdak4dxf1hb870745km9nc9hga8pnsnqi5v3g"; depends=[AnnotationDbi BiocParallel fgsea ggplot2 GOSemSim HDO_db qvalue reshape2]; }; + DRIMSeq = derive2 { name="DRIMSeq"; version="1.26.0"; sha256="0cj3fyb99fh30f35ra1gpvzwplszbwvwk33ppgyh1zx2axsx164w"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; + DSS = derive2 { name="DSS"; version="2.46.0"; sha256="1qm0pq6495fn2zrbddaadb1w01ry76rg8mmbmxf3zws9pww48jgf"; depends=[Biobase BiocParallel bsseq]; }; + DTA = derive2 { name="DTA"; version="2.44.0"; sha256="0s7z24ka29ki3gvx0831k4cxlnismk6gh92rqg3sx4qk4srlplhx"; depends=[LSD scatterplot3d]; }; + DaMiRseq = derive2 { name="DaMiRseq"; version="2.10.0"; sha256="10qpr9p6sqljq05rc2gkh45yh5rsmkh51prqq349b3733d1ld03y"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; + DeMAND = derive2 { name="DeMAND"; version="1.28.0"; sha256="1x0hyna6qgz5w9y7j95wyyrvg7rx8pdpyp9dzmic7q0hycjmg33n"; depends=[KernSmooth]; }; + DeMixT = derive2 { name="DeMixT"; version="1.14.0"; sha256="02hkkxkj6fv4jxlq3mj1hxd1zi42pvis8ffcwxf25jk8j19j124c"; depends=[base64enc dendextend DSS ggplot2 KernSmooth knitr matrixcalc matrixStats psych Rcpp rmarkdown SummarizedExperiment sva truncdist]; }; + DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.40.0"; sha256="05rwqchfspy8i9fcj9526rl5vvk0rrgr95nvxzdj0sa2136my8y4"; depends=[ggplot2 limSolve pcaMethods]; }; + DeepBlueR = derive2 { name="DeepBlueR"; version="1.24.0"; sha256="1as3jjsk77aczikd7lniiqih5x20f0wgf5biy4rlnhr0mlr05di6"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; + DeepPINCS = derive2 { name="DeepPINCS"; version="1.6.0"; sha256="1n81lsllbbdkl97dlw7lnpg815siiwk3xsivdfy166dh5jm104yl"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; + DegNorm = derive2 { name="DegNorm"; version="1.8.0"; sha256="077mi8986l1f9nzjxijwwvbwlzj840y4wc3qh2kvfvk9k5a81pi9"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; + DelayedArray = derive2 { name="DelayedArray"; version="0.24.0"; sha256="0nl1v0mxb759wiia2rsxay0cv0q631gqyzgaa10s175lhzsb8r6p"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Vectors]; }; + DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.14.0"; sha256="1r2fgww105433nk2r9sakqszh39l1zhh377wl5q9vnf00iasm2cr"; depends=[BiocGenerics DelayedArray S4Vectors]; }; + DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.20.0"; sha256="0qcn7rlq0bsj11sc31wzks2xv900fpmbsblxp9cng5lj5cn2djk3"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; }; + DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.6.0"; sha256="15g6agzfcp64dqs0mi0fjggkn8cqi9d116j8i0kjpb9sjh9882i3"; depends=[BH DelayedArray dqrng Rcpp]; }; + DelayedTensor = derive2 { name="DelayedTensor"; version="1.4.0"; sha256="1lahwbgwnkiw98ij2vjvf81baas3s35i357392jz3ps8sw7m7vs8"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; + DepInfeR = derive2 { name="DepInfeR"; version="1.2.0"; sha256="0887lyqq6sc12c9rzida2r56mnbrw313wyysy7g5cf18bcd2xcmx"; depends=[BiocParallel glmnet matrixStats]; }; + DepecheR = derive2 { name="DepecheR"; version="1.14.0"; sha256="1j4gxgw1s3a0nm888k02qi1smxqsplc42827ks666md025h9bxcj"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; + DiffBind = derive2 { name="DiffBind"; version="3.8.3"; sha256="039gy9ll6ingh3y5h2hp3rhbh2imaryjxzgf8ysk87irlbpnx1qs"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; + DiffLogo = derive2 { name="DiffLogo"; version="2.22.0"; sha256="0n6nyw0vb0hvi9awpx6igdgdsfd91fs520aspbxlb33jcd3x0aaz"; depends=[cba]; }; + DifferentialRegulation = derive2 { name="DifferentialRegulation"; version="1.2.0"; sha256="0qhbnac9726ywci7bbmgvjbyyxzqjp0rxynfha4769lmgl6fi1s0"; depends=[BANDITS data_table doParallel doRNG foreach ggplot2 MASS Matrix Rcpp RcppArmadillo SingleCellExperiment SummarizedExperiment]; }; + Dino = derive2 { name="Dino"; version="1.4.0"; sha256="1jvhcs24bi0g0hzi3dk6ny6wq8h2950whkqimdqyyglwy7lcbz1f"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; + Director = derive2 { name="Director"; version="1.24.0"; sha256="0bnvagsqm5cm8l2g18fyavaf7s93hwfi75zmggxiy46xqn7s1718"; depends=[htmltools]; }; + DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.40.0"; sha256="009nnl3zwcsg6mh7wl3j856dpi7awkyxdy660rqmiskn7m2ah4l1"; depends=[BiocGenerics IRanges S4Vectors]; }; + DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.14.0"; sha256="1fky7w82zx1ynmzfrslsih2639ihhzlj0pa14bwzj1g7xr5p49bi"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; + DominoEffect = derive2 { name="DominoEffect"; version="1.18.0"; sha256="15k62maqj4kbv2184h5j0j8rkmbcskvmjjn8z26kw296ihifis6w"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; + Doscheda = derive2 { name="Doscheda"; version="1.20.0"; sha256="0y0lxbjd1kqds3rx77sb4agk8j35xh8k698assrbjjhwg5gjfgid"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; + DriverNet = derive2 { name="DriverNet"; version="1.38.0"; sha256="0sryp2w0lzalqhk2aizj0lrbxj60illfzg6vzg8isqzv9ic4gnqd"; depends=[]; }; + DropletUtils = derive2 { name="DropletUtils"; version="1.18.1"; sha256="0rshaskx9nwd57aliwhk9gc0h6ccrvzbaikyjpbdz1i1zf4fsf77"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; + DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.40.0"; sha256="13xry8cdcidc7g2hl30pwyi9gg1kx2zw7w504fncmjk9niz5m95w"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; + Dune = derive2 { name="Dune"; version="1.10.0"; sha256="03kjhck5ypydzz23cp5avah9kpz74i61v9mi89rr7wqdsad3zyif"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; + DynDoc = derive2 { name="DynDoc"; version="1.76.0"; sha256="0w8x997npnphd91s3nc9f0s4vb94ikszw5mrpf5lfv3n25sqgvhb"; depends=[]; }; + EBImage = derive2 { name="EBImage"; version="4.40.0"; sha256="1k6gbivwlai451whq2vr3c0shzs9p4g188jn5waw7973gdzdi00q"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; + EBSEA = derive2 { name="EBSEA"; version="1.26.0"; sha256="1pfcpawbax3ld4wwn98b13aqrwzdgz8k4x63ncckd2jdanq1l01r"; depends=[DESeq2 EmpiricalBrownsMethod]; }; + EBSeq = derive2 { name="EBSeq"; version="1.38.0"; sha256="1gh1cyb76gv2h0knh780648gsbgpn76adfj6x3pjzily5m5bmin0"; depends=[blockmodeling gplots testthat]; }; + EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.32.0"; sha256="1k6c2qc7xvv3f094zddjdbjj4hlfxsv04gf5b0zdphmrhbhb8r9m"; depends=[EBSeq]; }; + EBarrays = derive2 { name="EBarrays"; version="2.62.0"; sha256="0kg22appd9sd6knm129hchkamzilwr3h8wi4ibrvllbfmx31v9q8"; depends=[Biobase cluster lattice]; }; + EBcoexpress = derive2 { name="EBcoexpress"; version="1.42.0"; sha256="0was3sjr5q420inj42bl0ifyd55b2brzbv2nskswskar7myad3yn"; depends=[EBarrays mclust minqa]; }; + EDASeq = derive2 { name="EDASeq"; version="2.32.0"; sha256="0hx4als33lvdchz5s6cv2axvjyp0k8p3v0lm51jayhjcjpmihqzp"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; + EGAD = derive2 { name="EGAD"; version="1.26.0"; sha256="01wxhrfbmhabh8ci95c3drll7g9lc9zpgmlac5b5blp1ar60a2if"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; + EGSEA = derive2 { name="EGSEA"; version="1.26.0"; sha256="1cjld33vrnlm6l8ssg6x4w7b4ack2xa1lpy924phx64zv44fi3s9"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; + ELMER = derive2 { name="ELMER"; version="2.22.0"; sha256="1cyyl3596dqs3qyz2ngdlbz8pl8hr5y2gnh5yby8pab4z1sxpr79"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; + EMDomics = derive2 { name="EMDomics"; version="2.28.0"; sha256="0fz8p3g9cb25v25cmmkwldxijplcm1wn99aa9i7s0zi3i8426vv5"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; + ENmix = derive2 { name="ENmix"; version="1.34.0"; sha256="0zg64c18ag11yqxayir9s5xgmani5pkpv074c95vnf0pysi7v6s4"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; + ERSSA = derive2 { name="ERSSA"; version="1.16.0"; sha256="03ns14cbi1c9jcmxf4fhv5f7r7hvql33wz9n9ddcrn43xki8r6vw"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; + EWCE = derive2 { name="EWCE"; version="1.6.0"; sha256="1d2sw63i5jy1fa1q3cwdvd05xd8bb0k66zjdvpgsds9m7mvw75vb"; depends=[BiocParallel data_table DelayedArray dplyr ewceData ggplot2 HGNChelper limma Matrix orthogene reshape2 RNOmni SingleCellExperiment stringr SummarizedExperiment]; }; + EasyCellType = derive2 { name="EasyCellType"; version="1.0.0"; sha256="1xry2kgb7ha2hg82jap88px9xxcq609il85xi0k0gilla1swvjc1"; depends=[AnnotationDbi clusterProfiler dplyr forcats ggplot2 magrittr org_Hs_eg_db org_Mm_eg_db rlang]; }; + EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.26.0"; sha256="1vws49a204xkwixdvp5l62in7vxbpf4qsfcnm34zkc4kx5hval9j"; depends=[]; }; + EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.16.0"; sha256="1nbg2r097rz24ybzh9ww6myd6kc2rz02vbg6g0rb3dlng0002xsm"; depends=[ggplot2 ggrepel]; }; + EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.27.2"; sha256="1il5cj5zmjwp3drw9psj1nsp94yxd421kd7jqrv34p4r1v0zw5z5"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.28.0"; sha256="0sjm4myq5nqrkk10z8k3i4az46zwcrr20rrs4vrvlmvz7fzspamx"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; + EpiCompare = derive2 { name="EpiCompare"; version="1.2.0"; sha256="0h0ap1xa0g57zh4djr263d97firklsvb6nwq0dk1h39j8wyp5j54"; depends=[AnnotationHub BiocGenerics BRGenomics ChIPseeker data_table genomation GenomeInfoDb GenomicRanges ggplot2 htmltools IRanges plotly reshape2 rmarkdown rtracklayer stringr]; }; + EpiDISH = derive2 { name="EpiDISH"; version="2.14.1"; sha256="02pf0y8sj1j48qfmfjckr4vx9rz3aypb6iydlpfvhcm829jr51cl"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; + EpiMix = derive2 { name="EpiMix"; version="0.99.16"; sha256="1lqjfi8q3fbqqbd3ykpb68php1iwy93n59dgjj14z1xb56hfwjna"; depends=[AnnotationDbi AnnotationHub Biobase biomaRt data_table doParallel doSNOW downloader dplyr ELMER_data EpiMix_data ExperimentHub foreach GenomeInfoDb GenomicFeatures GenomicRanges GEOquery ggplot2 impute IRanges limma plyr progress R_matlab RColorBrewer RCurl rlang RPMM S4Vectors SummarizedExperiment tibble tidyr]; }; + EpiTxDb = derive2 { name="EpiTxDb"; version="1.10.0"; sha256="152snn75nixdas9n3g80f32hmdrqdyv71cl8fkax5jl4mqrp6px5"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; + EventPointer = derive2 { name="EventPointer"; version="3.6.0"; sha256="0z9bcqfwi8mym1pwywmvdmiszw0whpz4svh7jgwjvza94z5w5ly5"; depends=[abind affxparser Biostrings BSgenome cobs doParallel fgsea foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; + ExCluster = derive2 { name="ExCluster"; version="1.16.0"; sha256="0m635as5xigkjqlmwh32afbbxffjf6ahrr83gr8z886z365h4m81"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; + ExiMiR = derive2 { name="ExiMiR"; version="2.40.0"; sha256="02aw2kjpg2xfmx0xjphsalw81gixwd2yrw73rcbcxyz7fpq98c5h"; depends=[affy affyio Biobase limma preprocessCore]; }; + ExperimentHub = derive2 { name="ExperimentHub"; version="2.6.0"; sha256="1j71zmxwiz82gg6kii2bmynzwll1r6fmsq972kmvxvm6crpvi15s"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; }; + ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.24.0"; sha256="0jkbp0pc6zjjwmklrd23grxrk200rw1wbd78w3qcicgzfnz90gar"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; + ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.8.0"; sha256="1jfzxca82cyd4hh4jk9nmwjwq608i8zs2nfjiclkpk0hh0bf6j22"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.10.0"; sha256="18dbcalpk4m8ziqksgp6kxd4gm8ip0l5sydnqfd7mjzymhvxsbv9"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; + ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.26.0"; sha256="0z9x1j9wrqqzqdg8c1vy20lgd9dfq9z74af813nkag8qph2nhnm9"; depends=[Biobase BiocStyle httr jsonlite limma RCurl S4Vectors SummarizedExperiment XML xml2]; }; + FCBF = derive2 { name="FCBF"; version="2.6.0"; sha256="124c25x18xkhyrizfzchj4xkg5hwdw3935gyibbvgxj6b3l1ph97"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; + FEAST = derive2 { name="FEAST"; version="1.6.0"; sha256="1yk2k0n6nafzh594rydnnpwmznv64iqan9p7137n72vpbcav9ql4"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; + FELLA = derive2 { name="FELLA"; version="1.18.0"; sha256="09rl9zna99rydqk8vfdlmfx0g4cg0zaw27r153ll7hpcnnkx18z1"; depends=[igraph KEGGREST Matrix plyr]; }; + FGNet = derive2 { name="FGNet"; version="3.32.0"; sha256="1jg7qiq7fdlw2fg362sjhalrdbvqxxrzb0q7l6ih4vq6qxjlyyyz"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; + FISHalyseR = derive2 { name="FISHalyseR"; version="1.32.0"; sha256="18sj688bm80zldj6d6w1ic66pk2qzp7liwp9vjmh8a80i6xxlnkm"; depends=[abind EBImage]; }; + FLAMES = derive2 { name="FLAMES"; version="1.4.1"; sha256="0fbf8v1daw77a7cy03hfhd7rj70wld6rbphgvp095i3xgw9j0p1v"; depends=[bambu basilisk BiocGenerics Biostrings circlize ComplexHeatmap cowplot dplyr DropletUtils GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gridExtra igraph jsonlite magrittr Matrix MultiAssayExperiment RColorBrewer Rcpp reticulate Rhtslib Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment stringr SummarizedExperiment tidyr withr zlibbioc]; }; + FRASER = derive2 { name="FRASER"; version="1.10.0"; sha256="1ql4h8j4yzd408w1frvzyf90ksddy6jgg6gcqhfx0qh114b12r7c"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; + FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.34.0"; sha256="0xnrrrhxdgcn6033kj1v780s7m58j2krc8hj1y554ddilf90jwy5"; depends=[fda MASS]; }; + FScanR = derive2 { name="FScanR"; version="1.8.0"; sha256="1i0w5ai5si9a4m3s96grm75wwdx5g2ah4vg0q95sgjj68gx4ln2c"; depends=[]; }; + FamAgg = derive2 { name="FamAgg"; version="1.26.0"; sha256="17avlg6x7kan3lq5ffvzq7lmrscnm0h5vj29hhspf6zn8gwpi86f"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; + FastqCleaner = derive2 { name="FastqCleaner"; version="1.16.1"; sha256="1xy4b1ppm9jlrxzzr18f0vcj91wpai328c1l49jkrz3cc6s0hap2"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; + FilterFFPE = derive2 { name="FilterFFPE"; version="1.8.0"; sha256="0i7737mzg557yg23h730pvxz1gx37blbh7krla4p4nqmic2qdrcy"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; + FindIT2 = derive2 { name="FindIT2"; version="1.4.0"; sha256="0cid8lvh5zck421ajfca320n4lxr7jafmipgcvk86zd89izz72pa"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; + FitHiC = derive2 { name="FitHiC"; version="1.24.0"; sha256="1c7jscl82knbh5ha1i1hlm46nnhz6aw5h0j5xnl4hlgx8mnn05fl"; depends=[data_table fdrtool Rcpp]; }; + FlowSOM = derive2 { name="FlowSOM"; version="2.6.0"; sha256="1s7xilhhc55igq0zmvpfzhnh5df8bzmm3daknz75xhzhhg5b7z1c"; depends=[BiocGenerics colorRamps ConsensusClusterPlus dplyr flowCore ggforce ggnewscale ggplot2 ggpubr igraph magrittr rlang Rtsne tidyr XML]; }; + FoldGO = derive2 { name="FoldGO"; version="1.16.0"; sha256="1b4h4gggxfv12lvxsjk1c8rn9rrlcl63p8p61i7wfbh3nkzx62r0"; depends=[ggplot2 tidyr topGO]; }; + FunChIP = derive2 { name="FunChIP"; version="1.24.0"; sha256="1wjbjmppizpgdxlkq19wa5v1yvkgh6cal2cqiby90267djq9m8y5"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; + FuseSOM = derive2 { name="FuseSOM"; version="1.0.1"; sha256="0wx7f7y81sr0qmz8sza1rpg3v8d9z6rc2z6df83ws1rwsaz5zn0f"; depends=[analogue cluster coop diptest fastcluster FCPS fpc ggplot2 ggplotify ggpubr pheatmap proxy psych Rcpp S4Vectors stringr SummarizedExperiment]; }; + GA4GHclient = derive2 { name="GA4GHclient"; version="1.22.0"; sha256="09kfjrsbz6sk3g304kqk0zy39v10sb758alyvajvjj7pfkdv67ak"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; + GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.20.0"; sha256="0zal12pb48hwam9zan1a865i5njrvzg9dc7mpd9jiffp7q9rrwi9"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; + GARS = derive2 { name="GARS"; version="1.18.0"; sha256="12mfqv9ag1rrig8wcpl5zwvb68j7g1cdrw5ynlkbrgxcwnibpmnq"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; + GAprediction = derive2 { name="GAprediction"; version="1.24.0"; sha256="0x2mkm6fq7772fql2whjp1xcf5pqi06ywzj8prb51yz8s8zqvzl2"; depends=[glmnet Matrix]; }; + GBScleanR = derive2 { name="GBScleanR"; version="1.2.4"; sha256="1jdldghw6kmck732bn38ix66ys7l2dx0nj0136m8rvsxab980kxv"; depends=[expm gdsfmt ggplot2 Rcpp RcppParallel SeqArray tidyr]; }; + GCSscore = derive2 { name="GCSscore"; version="1.12.0"; sha256="11d8ygc8lfyzz7vmwvi6yy3lf6pd8fsichg6ki0lkp459nivbdi8"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; + GDCRNATools = derive2 { name="GDCRNATools"; version="1.18.0"; sha256="0f2nqdcygpmcwjngadqxri3y87ylrg0f67ihg7gwd4afqsbckd62"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; + GDSArray = derive2 { name="GDSArray"; version="1.18.0"; sha256="1knaqi5pslqkkx7fd93vmkwcxii7rbyj13s89iy54snlw29lbchj"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; + GEM = derive2 { name="GEM"; version="1.24.0"; sha256="0lbs7igiq8v0y66pbr0jvxcadp7ni47mjynag7m352k87633nann"; depends=[ggplot2]; }; + GENESIS = derive2 { name="GENESIS"; version="2.28.0"; sha256="0lca67dxnwpignglimc67hpyhjg6ybwqz9sqhg4yqg6m05ym15fa"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; + GENIE3 = derive2 { name="GENIE3"; version="1.20.0"; sha256="096crx7n75x60s9sx3l7nld3yvrsqs0clvjsdarxc6bbn2qxk81i"; depends=[dplyr reshape2]; }; + GEOexplorer = derive2 { name="GEOexplorer"; version="1.4.0"; sha256="1gjb0xsfg745sckzwz0v4g1jh6ikwkbvb5k9cw15g3cnqc5xlqjl"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; + GEOfastq = derive2 { name="GEOfastq"; version="1.6.0"; sha256="1k62g3k60rzddg6k7f88pkb19ip6zshm2ymi1gz10kf9xrfj0d97"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; + GEOmetadb = derive2 { name="GEOmetadb"; version="1.60.0"; sha256="09xfacrfdnnm43pi0a96zmw1awqgffq1izdyzpnjd23ks4hjw9hk"; depends=[GEOquery RSQLite]; }; + GEOquery = derive2 { name="GEOquery"; version="2.66.0"; sha256="0ck2aml1kxdahwcszi3j7hcikwi8fdnzphlrsn3h2q4dkk5x00kn"; depends=[Biobase curl data_table dplyr limma magrittr R_utils readr tidyr xml2]; }; + GEOsubmission = derive2 { name="GEOsubmission"; version="1.50.0"; sha256="1vqdh9nbib40xcwc2j239ijjdrlgyx20qb5ji99639v6ibia02wm"; depends=[affy Biobase]; }; + GEWIST = derive2 { name="GEWIST"; version="1.42.0"; sha256="1hkqv11apwhvg89ky792m6y0aml6hmxbqkk622r4zr1snkc6ggxw"; depends=[car]; }; + GGPA = derive2 { name="GGPA"; version="1.10.0"; sha256="16yz5vjf76bj3jkds32fxbk3032ni57aafz2crp2rzrq0rlvk1bq"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; + GIGSEA = derive2 { name="GIGSEA"; version="1.16.0"; sha256="1gf4zzxcbh4g54div9ckjcx6yha74ilzqbmjzifjg1ybixy9d2mw"; depends=[locfdr MASS Matrix]; }; + GISPA = derive2 { name="GISPA"; version="1.22.0"; sha256="0j448iqr71hqbfv9r9f4rccy4phfhcgy7w8kij0idw2mjpvkpyvr"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; + GLAD = derive2 { name="GLAD"; version="2.62.0"; sha256="0gb52ic5r6nkgm2ynm174vcvbmkbhhjgv71lsmxpxzcsb6rr7qj6"; depends=[aws]; }; + GMRP = derive2 { name="GMRP"; version="1.26.0"; sha256="1q79q958wpfrl6q4g1yl6kxcw38817rpbdnjl4k4xzk3hf5jmd7h"; depends=[diagram GenomicRanges plotrix]; }; + GNET2 = derive2 { name="GNET2"; version="1.14.0"; sha256="0vhdn8nrp9fj2g1qdng0zdw5crmzcck3rwvvzcswh2p9pwg1cfzb"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; + GOSemSim = derive2 { name="GOSemSim"; version="2.24.0"; sha256="14wc7qgk1psknld05246cn0nqxpbjprax7j75h5yyd0w7hjyly2s"; depends=[AnnotationDbi GO_db Rcpp]; }; + GOSim = derive2 { name="GOSim"; version="1.36.0"; sha256="0hxy1x1mkygd0r7n38plpb3wj443kak413ml813zzmhvrs39zvnf"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; + GOTHiC = derive2 { name="GOTHiC"; version="1.34.0"; sha256="117vbz1yasav1p92x2wylmsc9kc5z0qv4jsvd1nf9b2ndxcrgxd5"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; + GOexpress = derive2 { name="GOexpress"; version="1.32.0"; sha256="1wccyfy8wkgns12r2mh7w6zfwjqiqhv1riyk0s4ivax2vyqmhb65"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; + GOfuncR = derive2 { name="GOfuncR"; version="1.18.0"; sha256="0d0xis4nns5icsr16w4ik2d95n3p2h93c47jvlp22crv7f4rlaa5"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; + GOpro = derive2 { name="GOpro"; version="1.24.0"; sha256="04kr02whakm65gqy1h4vxl9m6s9zl6hgwd3dfdk8106npyrjqlsb"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; + GOstats = derive2 { name="GOstats"; version="2.64.0"; sha256="07chyfkq8nwxjgnlrrwza8jw996dq0ki4bzdfalj9yl1iac1pnys"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; + GOsummaries = derive2 { name="GOsummaries"; version="2.34.0"; sha256="1fgalk4gs1vajax7zngq9caqdw0r9ryjz0vydjr4n21ypjbc9476"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; + GPA = derive2 { name="GPA"; version="1.10.0"; sha256="0gd7ln4xiagibzdzhfqy8m7v35yp6vm07xhbp7ky5ipq1j2nzpcc"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; + GRENITS = derive2 { name="GRENITS"; version="1.50.0"; sha256="0bfi8y0ps4flir7yvl9wgdpy9hiii79awc20rp8qw5d5j3wbb9by"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; + GRaNIE = derive2 { name="GRaNIE"; version="1.2.0"; sha256="1qxfjgv2z7b97m9mcs6h0qfg7pwkai0bhv8mprgl3j1cra9zl9li"; depends=[biomaRt Biostrings checkmate circlize colorspace ComplexHeatmap data_table DESeq2 dplyr forcats futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph limma magrittr Matrix matrixStats patchwork progress RColorBrewer readr reshape2 rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect viridis]; }; + GRmetrics = derive2 { name="GRmetrics"; version="1.24.0"; sha256="08jjmlr1xiilfji6c42bcaf22vjvizhj1vgxxxzmda349cxyc1fv"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; + GRridge = derive2 { name="GRridge"; version="1.22.0"; sha256="0vmwm50dwk3im3qx40vh9ipmfqywzz5fmmm79b74zjcd3qjrznf3"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; + GSALightning = derive2 { name="GSALightning"; version="1.26.0"; sha256="08zkd2vganx424g8kkp2ny9dzpggcvj53avsjk7gx2fr1l8zxhmd"; depends=[data_table Matrix]; }; + GSAR = derive2 { name="GSAR"; version="1.32.0"; sha256="17i6v0wmcl7qz96aqaf596zrdfndja9nvrzy298vsz3xgb9x0jx2"; depends=[igraph]; }; + GSCA = derive2 { name="GSCA"; version="2.28.0"; sha256="0svf5cz8dq6ghv6qvpzrhziks9nchkg3izw3ivqnqgc9b7h54cds"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; + GSEABase = derive2 { name="GSEABase"; version="1.60.0"; sha256="0i8fliln3v9sw9x34pqafdx1z6jkys8b11fkz4ihmw8lc8lfd0x5"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; + GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.18.0"; sha256="11j46g9knb7da3xh5fq68w3d3z2h73w08dc7ml35a3336f52604w"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; + GSEAlm = derive2 { name="GSEAlm"; version="1.58.0"; sha256="0xzywh8824xiggwgw88x2x83z75wwrajiv7qk7hgp1zw2mg2k15y"; depends=[Biobase]; }; + GSEAmining = derive2 { name="GSEAmining"; version="1.8.0"; sha256="0dlj9s2070bms5ih896sffniygcnwbvbq6wphiwsljgcs4fb94sf"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; + GSRI = derive2 { name="GSRI"; version="2.46.0"; sha256="13nhiz25h66c8ql2mcdx9zvlvqyxvhvy2xcsh2z42jggrnbq026p"; depends=[Biobase fdrtool genefilter GSEABase les]; }; + GSReg = derive2 { name="GSReg"; version="1.32.0"; sha256="0zz1xlf3n0bwlvpn8r8bi5q54rjaj2clnzg773ksnc59nw1bkxzq"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; + GSVA = derive2 { name="GSVA"; version="1.46.0"; sha256="1vpnxcjd9npbmqpffdr6gl89b17jcjykkr725z9144xkaqclbw65"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; + GSgalgoR = derive2 { name="GSgalgoR"; version="1.8.0"; sha256="176qh1cfmy1cv3773fhy5x0g7qx9rnawmkk7n77mikbp45c8yvi9"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; + GUIDEseq = derive2 { name="GUIDEseq"; version="1.28.0"; sha256="0bvns0sqwmqybfjcy9cbdwm3gglf7fisllxmvqxk9ky270jc31zg"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 hash IRanges limma matrixStats multtest openxlsx patchwork purrr rio rlang Rsamtools S4Vectors stringr tidyr]; }; + GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.8.0"; sha256="1h481k2sz3mbj5wq8xfi78gc97p2370yadj37pb0hw1mi460xx4c"; depends=[caret doParallel GA ggplot2 Matrix memoise Rcpp RcppEigen reshape2]; }; + GWASTools = derive2 { name="GWASTools"; version="1.44.0"; sha256="02fi0vqk554l3akh841lam4wfknzi31rpbgj560vjfgpwvhz5r9q"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; + GWENA = derive2 { name="GWENA"; version="1.8.0"; sha256="1w27nwgs6087a5s0vh70365ikv60ahp3jvhridsqy9n038wp2yhq"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; + GateFinder = derive2 { name="GateFinder"; version="1.18.0"; sha256="1s37haxmdh84fxqjvvb3dvaha8ds2khhnfk8z7jpsx1arzzlm9r0"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; + GenProSeq = derive2 { name="GenProSeq"; version="1.2.0"; sha256="1fmmyb2lhnnvr8s9l8pljrkpzlzhbchy0sv6q72lgqbnxr5p2a5f"; depends=[CatEncoders DeepPINCS keras mclust reticulate tensorflow ttgsea word2vec]; }; + GenVisR = derive2 { name="GenVisR"; version="1.29.3"; sha256="0qqcdxjpkj8dlwq0najlbvp6lqby6x812w0h3ds9n8b06mxddzp2"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; + GeneAccord = derive2 { name="GeneAccord"; version="1.15.0"; sha256="1dlnqdcrl1fv5yf0zwfgkqfd2x19fv6q84p7c730nmnnaqal6md1"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; + GeneBreak = derive2 { name="GeneBreak"; version="1.28.0"; sha256="1rq7zw6d6i4qrich9g00pshily56y704q6llwgb39609m1h9828c"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; + GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.44.0"; sha256="16cgfw2fdggkzklb13qf7mravbjymg6yazl7q6iqdrkwlhpxl0f7"; depends=[Biobase]; }; + GeneGA = derive2 { name="GeneGA"; version="1.48.0"; sha256="136z3sxjps1k63ivr0cmqg7xkvbzf7j69vwkfbc1n00yfapiprm2"; depends=[hash seqinr]; }; + GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.24.0"; sha256="1j8jkg5cfkizd62rqmagwnmbi5f3c9bix7q5si115wxnc1nfc8cd"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; + GeneMeta = derive2 { name="GeneMeta"; version="1.70.0"; sha256="1ggjnbsmjnprdmbpcb0ghqaydr95d7vf9q27z0kg1mb6djd92n26"; depends=[Biobase genefilter]; }; + GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.40.0"; sha256="023ibp69gb322csc8g7yz2l1khhsh20zdqxf1apcv0mr5ils6nga"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; + GeneOverlap = derive2 { name="GeneOverlap"; version="1.34.0"; sha256="0ii3ymysqkhyvj204zigpgjny0cglggqmvw311gvgkdi16dib1qs"; depends=[gplots RColorBrewer]; }; + GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.54.0"; sha256="1q7fgxgak5fahmxy17ys3g3k1mqihinyhnm0f7dfvydmd25cfx84"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; + GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.42.1"; sha256="0cg5zkkg1bd3nxaxpvw46xbi4b7k1wnl0zb40qh2xizvsmrkw8n2"; depends=[Biobase limma MASS]; }; + GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.18.0"; sha256="0kn3qgdzi6wdr6r34s646j082lv11hng71l8waqiip2xn7xqnjww"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; + GeneTonic = derive2 { name="GeneTonic"; version="2.2.0"; sha256="113h6s9xak7qpc6wgkr33sqr7s62xnx78ciz0jhhw4ya5vbh90pj"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap ComplexUpset dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; + GeneticsPed = derive2 { name="GeneticsPed"; version="1.60.1"; sha256="1haqy46wfkgwbv86k5fw6q0hxd98i75z5rxjkzpl2dhara0zmkna"; depends=[gdata genetics MASS]; }; + GenomAutomorphism = derive2 { name="GenomAutomorphism"; version="1.0.2"; sha256="1qcc6k6nnx6p4g8pzzdvpqg3wc8b26ml3l6c24mjki7630xvgxy5"; depends=[BiocGenerics BiocParallel Biostrings data_table doParallel dplyr foreach GenomeInfoDb GenomicRanges IRanges numbers S4Vectors]; }; + GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.34.4"; sha256="1nskqmlar85zg96c1fbacl7dqg6r0gl814rc7yh482y4wgmwyg0r"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.34.0"; sha256="0y9yjyzch0cn2j4yrwfp0z8qw3yqvl8h1dlrl7ylzy9mwsqc6wg5"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; + GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.22.0"; sha256="0wzkhbv1zalx05l3vwr9qjr8335iwyp47pjnapcn5if49a55m8c1"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang tibble xml2]; }; + GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.6.0"; sha256="0kknl7ras2wir8775m0spl8dya6pf68l1br14wzjrxxwsdlbfx7c"; depends=[Biostrings broom data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2 scales]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.50.3"; sha256="14pn7lngayascj5k84g2g748assbivpiakss247cdj9ngzx5sfwz"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; + GenomicFiles = derive2 { name="GenomicFiles"; version="1.34.0"; sha256="0k64m9f5y88p90wd87hy0ixj5ly5yi413al9p2bn10b1fjx2c451"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + GenomicInteractionNodes = derive2 { name="GenomicInteractionNodes"; version="1.2.0"; sha256="12mrnc2wpsj87qkff5kxz58058wzvr8s94pc98lvf8csha6sf6rc"; depends=[AnnotationDbi GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges RBGL S4Vectors]; }; + GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.32.0"; sha256="0l14hz5pr0wlin46y8ycpvk5hp2ld9ajx11y85rw5hlwv50byfbb"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; + GenomicOZone = derive2 { name="GenomicOZone"; version="1.12.0"; sha256="0jq8llksadhls1174g22kjr0k5vdsz99k9h2ypwfji2j05c4843a"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; + GenomicRanges = derive2 { name="GenomicRanges"; version="1.50.1"; sha256="14m4pvvd9m8kpc7k905km9vib7giq0i9g11bxc1ygw30ifi96966"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; + GenomicScores = derive2 { name="GenomicScores"; version="2.10.0"; sha256="1sz0gmwc5iam83pxnc702pd5h6nsa46kb0wsqs8ysb1ximbkfh5h"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array httr IRanges rhdf5 S4Vectors XML]; }; + GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.6.0"; sha256="0mzwn9fchaxkpd4f85bj63gnwnrxba47slrcxmgv7a39b1yjh46y"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr irlba plotly S4Vectors SummarizedExperiment]; }; + GenomicTuples = derive2 { name="GenomicTuples"; version="1.32.0"; sha256="1wahzm5vk1l5gcj8y8ngkp9w1yzk0b5hsvx53mpcis08np9x64bk"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + GeoDiff = derive2 { name="GeoDiff"; version="1.4.0"; sha256="0ycfzy05kr638a4hydhxl36n9qmdjb2gp8njbc49xgq5qby6qpgc"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; + GeomxTools = derive2 { name="GeomxTools"; version="3.2.0"; sha256="1rhld2s6ixq8djnqpmxjbibkrksxgvn4giyrqm8pmmkqy3awczs6"; depends=[Biobase BiocGenerics data_table dplyr EnvStats GGally ggplot2 lmerTest NanoStringNCTools readxl reshape2 rjson rlang S4Vectors SeuratObject stringr]; }; + GladiaTOX = derive2 { name="GladiaTOX"; version="1.14.0"; sha256="02svr9mnqzp3gy8gd5b5d53mc0gdw8vkdzyhxarq52bp711q8g03"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; + Glimma = derive2 { name="Glimma"; version="2.8.0"; sha256="1fskabpd3xlrbhqvzam9ibpxmbdys7y1b265np8hz4k704ww1g22"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; + GlobalAncova = derive2 { name="GlobalAncova"; version="4.16.0"; sha256="0z3c9kcd17chsnypl5kbrdaz1pdlaq687aq9y9yqasqp8bb8lqwv"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; + GmicR = derive2 { name="GmicR"; version="1.12.0"; sha256="08a296vyl3bcrak3bpgb7il1r8w1mf7hwhc1qvrxfjlj7w1v1yfm"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; + GraphAT = derive2 { name="GraphAT"; version="1.70.0"; sha256="1y4fbxvcrb6gndz69g17ya1ad11anbxbiymdvxp9rs363kg563ll"; depends=[graph MCMCpack]; }; + GraphAlignment = derive2 { name="GraphAlignment"; version="1.62.0"; sha256="004ivwdz8xdpvdakc9i32skh9f7rj8d5mf3r1ap2n1al53ymbjlj"; depends=[]; }; + GraphPAC = derive2 { name="GraphPAC"; version="1.40.0"; sha256="08kpnqpmicm3jydnx4p9yxmqf7rj4br8jsi6zv04qq4f3mz1l1ii"; depends=[igraph iPAC RMallow TSP]; }; + GreyListChIP = derive2 { name="GreyListChIP"; version="1.30.0"; sha256="02qzvs8fmh79g4cc5j2gxj1wazpmly7vjr527qlsgi3jmc3swxgz"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; + Guitar = derive2 { name="Guitar"; version="2.14.0"; sha256="0lrw1v82amr54bkfh98953b16fhlgd1i6kz1g7zy8gj0hd417ms1"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; + Gviz = derive2 { name="Gviz"; version="1.42.0"; sha256="09j94kk3dd3bbfw6a2l14i7vd4rh11g9lxhw4zsm15vg71cm1lv9"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; + HDF5Array = derive2 { name="HDF5Array"; version="1.26.0"; sha256="1y25mlsqf2inij6w2825xxl30bdba971az6rjf7j9bnya3gpvi6h"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; }; + HDTD = derive2 { name="HDTD"; version="1.32.0"; sha256="1x3j104sa69qcymxzsda460fcwphk2kfy9hbh4jj92jqglqv6npp"; depends=[Rcpp RcppArmadillo]; }; + HELP = derive2 { name="HELP"; version="1.56.0"; sha256="1j5wa3w32rsj4pzvx4dyg43m2kqmnxxyrd2gaplnq9riwgmqgs0j"; depends=[Biobase]; }; + HEM = derive2 { name="HEM"; version="1.70.0"; sha256="03m1ciknphvh6vf0jl2n53jjqdggjaakvfpyx6ba0zspa88pw2lk"; depends=[Biobase]; }; + HGC = derive2 { name="HGC"; version="1.6.0"; sha256="0lxjfzwcmksfrfgs49ad7idv93z7y7g35vir2sxacnmprs451nar"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; + HIBAG = derive2 { name="HIBAG"; version="1.34.0"; sha256="11ybx1r91r6m8hflmj5bl0531yfqpcjclkm38xjq51g4q5kjypbx"; depends=[RcppParallel]; }; + HIPPO = derive2 { name="HIPPO"; version="1.10.0"; sha256="136wsy70p87yva1ipdxg27gsz9mran9q9050frrx91d0fl1q7d94"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; + HIREewas = derive2 { name="HIREewas"; version="1.16.0"; sha256="1mrymcipll2rj8xkh0h7ggvkazdlrhw16px6kc4xfwkr65vs4p7g"; depends=[gplots quadprog]; }; + HMMcopy = derive2 { name="HMMcopy"; version="1.40.0"; sha256="0p1jn2lyvwy9kx83kmpxjma0fcar8gngp3hmv35qc2qa0ns6ji5v"; depends=[data_table]; }; + HPAStainR = derive2 { name="HPAStainR"; version="1.8.0"; sha256="0h2i5aihrwhka4qq5xka1l1k5kwx1sn2j0xccgiwkm27743y1l68"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; + HPAanalyze = derive2 { name="HPAanalyze"; version="1.16.0"; sha256="0kfmlsar5a8ypq412fzm473phadqy9s1icn1idwbk9hrv6a9h0ch"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; + HPiP = derive2 { name="HPiP"; version="1.4.0"; sha256="0rpfkkicc1bhzwxfkh29wz154vn651aydjvri9m8py0fw5lwjc21"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr MCL pROC protr PRROC purrr readr stringr tibble tidyr]; }; + HTSFilter = derive2 { name="HTSFilter"; version="1.38.0"; sha256="15fxsdh2zaz42i3zrpk8yrvgwg8f1jk8f184wjdrkw3jlxh46k55"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; + HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.27.0"; sha256="14w7fmxmcs81m9nkq33nrsk98pb55zprnzhrg6whzkid9g7fg4y0"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; + HTqPCR = derive2 { name="HTqPCR"; version="1.52.0"; sha256="1kclvh8f2sf534cjw07ry9nx74n6p7r0vmc3mk2nr37yvpf26b3q"; depends=[affy Biobase gplots limma RColorBrewer]; }; + Harman = derive2 { name="Harman"; version="1.26.0"; sha256="1gfdmcjgr3vnafyddcg8kvw0ls7303r2z7ql2lls31x4cz9las3w"; depends=[Ckmeans_1d_dp matrixStats Rcpp]; }; + Harshlight = derive2 { name="Harshlight"; version="1.70.0"; sha256="0asjgcnwawg8x7ql0srhb2011rvb4kr2cpsa1cy28nfmjfvdf0qm"; depends=[affy altcdfenvs Biobase]; }; + Heatplus = derive2 { name="Heatplus"; version="3.6.0"; sha256="0zbjw9f616dz1fpp6q6whbmlrf2gypq8pp9i66c376cs2aifp1si"; depends=[RColorBrewer]; }; + HelloRanges = derive2 { name="HelloRanges"; version="1.24.0"; sha256="049841bzm0mbj3vhy70yp1r4kc95lqn1yz52ld24b9m2svwzwzhc"; depends=[BiocGenerics BiocIO Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + Herper = derive2 { name="Herper"; version="1.8.1"; sha256="18jmxkw6j7y10958q48phs5hanw3aqdnjx64r9qymg8jbf4z5gnr"; depends=[reticulate rjson withr]; }; + HiCBricks = derive2 { name="HiCBricks"; version="1.16.0"; sha256="03m80snh7k7gmkjj19rxgch2bhwlwiibrpg3wc2gyqiv0007c6nl"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; + HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.6.0"; sha256="0kq6p1v4d29f9x1b1bfad4gqmi61cjv8h10lzlfkybiqvqgv717d"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; + HiCDOC = derive2 { name="HiCDOC"; version="1.0.0"; sha256="06814r4nmznixr9iq7kkfr5cj8wpgyfykscz454pvz3fzflfxvr1"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicRanges ggExtra ggplot2 ggpubr gridExtra gtools InteractionSet multiHiCcompare pbapply Rcpp rhdf5 S4Vectors SummarizedExperiment zlibbioc]; }; + HiCcompare = derive2 { name="HiCcompare"; version="1.20.0"; sha256="0hvv3bp0fk03bg7ndnr7j4p1a56xavbpl84941fngc45xybdqjmf"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; + HiContacts = derive2 { name="HiContacts"; version="1.0.0"; sha256="1sbvlfldfbill61vih6ankmqz63r9ym6p3l3j7fy8pl4q1bwv5xf"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicInteractions GenomicRanges ggplot2 ggrastr glue HiContactsData InteractionSet IRanges Matrix reticulate rhdf5 S4Vectors scales stringr tibble tidyr vroom]; }; + HiLDA = derive2 { name="HiLDA"; version="1.12.0"; sha256="0jlx7x06lrxh86sbkcnyabbv1g1jyf06dwj0wmlx9q1q7n0wn08d"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; + HiTC = derive2 { name="HiTC"; version="1.42.0"; sha256="10m3pq22a8m8bbfkmq5r44ydg2668g6dxmxp7km47jxgf9hlqhcl"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; + HilbertCurve = derive2 { name="HilbertCurve"; version="1.28.0"; sha256="09l6lllp0sqb1m7fgdxmq05ng4qr6817l360s7ly6cigkaylq6s1"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; + HilbertVis = derive2 { name="HilbertVis"; version="1.56.0"; sha256="15xql3rq1g2p0ih1ahjv2y9rwfrzrhj9f4sp7qrrhha9izas4v6d"; depends=[lattice]; }; + HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.56.0"; sha256="1x4clsjdg95wn4n65jyh1fyhnamma1897mq9jg16akvg7d48q60m"; depends=[HilbertVis]; }; + HubPub = derive2 { name="HubPub"; version="1.6.0"; sha256="014alfgyrqk8l74jsnz9lkjfiracrrdg7xv757qawvkwzl4phs89"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; + HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.14.0"; sha256="1jlq5np9sxdznxmbqjxlasx8ksy2lzhx98sf6svkxjw9p5qxpxlk"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; + HybridMTest = derive2 { name="HybridMTest"; version="1.42.0"; sha256="0mv092lq8548l306ghgvh8yka1fnyvs7w1yzfjzcchj8vlsb0qns"; depends=[Biobase fdrtool MASS survival]; }; + IHW = derive2 { name="IHW"; version="1.26.0"; sha256="04vbf42bzqydf5mi4mqmcyh0xdx4phs4cjhsm6fimhmjhxm8jyry"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + ILoReg = derive2 { name="ILoReg"; version="1.8.0"; sha256="1zqlj87p641xi77vgdskxyspg2pnwmva3a4sn62w7r8blik4j3z1"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; + IMAS = derive2 { name="IMAS"; version="1.22.0"; sha256="1kc30iq5myxqx81kl9pkwm2lydg0n8prch7f4nvm175myyni0950"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; + IMMAN = derive2 { name="IMMAN"; version="1.18.0"; sha256="1kmpg3zlhdg9b4dgj2r1v67kdpj17383v85ycik35lvpa2dh9xa6"; depends=[Biostrings igraph seqinr STRINGdb]; }; + IMPCdata = derive2 { name="IMPCdata"; version="1.34.0"; sha256="1gasv2i11sfdsinpg46b1lmjc8g864wzjg3791zx43ls1qnslgdh"; depends=[rjson]; }; + INDEED = derive2 { name="INDEED"; version="2.12.0"; sha256="14ivj70sdzii9cqm5qh76r92i7pscr4scix7pn6s5zfs7g2z5sri"; depends=[devtools glasso igraph visNetwork]; }; + INPower = derive2 { name="INPower"; version="1.34.0"; sha256="07sjr0z3m1jchlxc1pqp97l4mydskbkh1xw41cwsw39r9ssimpni"; depends=[mvtnorm]; }; + INSPEcT = derive2 { name="INSPEcT"; version="1.28.0"; sha256="126cbanan2fr916spacw6lm8hzkys56k7z3gq0r351zd7q13gky3"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + IONiseR = derive2 { name="IONiseR"; version="2.22.0"; sha256="1xkxqavhcw22lhij87cpd5ps1ldkzzi0pp93d38pxbbhj15gc3d3"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; + IPO = derive2 { name="IPO"; version="1.24.0"; sha256="0hj1kprkkv9ab0akblb89ww0iwsqlnr0r6d8i079fif197ikfr08"; depends=[BiocParallel CAMERA rsm xcms]; }; + IRISFGM = derive2 { name="IRISFGM"; version="1.6.0"; sha256="1dhnv62p9crdrqi4kla33hykl4ag7agcb298ycgszc4h8mmslgrc"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; }; + IRanges = derive2 { name="IRanges"; version="2.32.0"; sha256="0jvavhl6p2di0n5176gg7shfmpg79rngl2gaw423icswdf8kay89"; depends=[BiocGenerics S4Vectors]; }; + ISAnalytics = derive2 { name="ISAnalytics"; version="1.8.1"; sha256="0lshyr3mg3w3h4annx0ssjv9njlyz3z79gl3sw2dq0g7viipd6pv"; depends=[bslib data_table datamods dplyr forcats fs ggplot2 ggrepel glue lifecycle lubridate magrittr psych purrr Rcapture readr readxl rlang shiny shinyWidgets stringr tibble tidyr]; }; + ISLET = derive2 { name="ISLET"; version="1.0.0"; sha256="0iwcdvq5dzvdsiwchlmlzfay10x5ci35i905xkiil6a77l9s57iq"; depends=[BiocGenerics BiocParallel Matrix SummarizedExperiment]; }; + ISoLDE = derive2 { name="ISoLDE"; version="1.26.0"; sha256="07xw0cg121xcv85d4ah67a38x3y8h6gxx8zwrwqffp86vfzqwcgl"; depends=[]; }; + ITALICS = derive2 { name="ITALICS"; version="2.58.0"; sha256="0g937h9zxkxnm424wh58b46mfasdd7pqy5c04r0a46mx9lxibgbs"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; + IVAS = derive2 { name="IVAS"; version="2.18.0"; sha256="0nhmxxj0gdbsx18a2cn2905ylf1m6h514ak51fxfrl3krcjz3flr"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; + IWTomics = derive2 { name="IWTomics"; version="1.22.0"; sha256="18mdhld2m3pjfmnaryfvdaa0z6h87hjcy0dkx5vkpjn9ph0cc7pq"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; + Icens = derive2 { name="Icens"; version="1.70.0"; sha256="13ygc467nqh0235sf1ags1ihv7pg2yriva6qi7z46c534vxv6b8n"; depends=[survival]; }; + IdeoViz = derive2 { name="IdeoViz"; version="1.34.0"; sha256="0jpj8bkfm3jcb5fj0xhh13vqh2dcgdgi4i1qk3wx1301irkk7fgf"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; + IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.12.0"; sha256="1bzj6ckkwj430pwzy4nysk0k0vbjpa9mgibgabl03m7n33irxvza"; depends=[BH Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders SummarizedExperiment]; }; + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.26.0"; sha256="16nf2m2vij7vx8nxmwk6pc1im5mia1x1y7kbwn0jcfm5ac57mzpd"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; + InPAS = derive2 { name="InPAS"; version="2.6.0"; sha256="1xbkz7g8yw43dbqkck42ikgrwi7yym39kbj65gpc4fyjyg5wkhln"; depends=[AnnotationDbi batchtools Biobase Biostrings BSgenome cleanUpdTSeq depmixS4 dplyr flock future future_apply GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr parallelly plyranges preprocessCore readr reshape2 RSQLite S4Vectors]; }; + InTAD = derive2 { name="InTAD"; version="1.18.0"; sha256="1fgrais14665nz0cbsmzgzawp6vzlv5v4qdbn56lvwfr4svd39ly"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; + Informeasure = derive2 { name="Informeasure"; version="1.8.0"; sha256="0ywffwxl3nx7w7p54ixlr058l92s2d17mrnfj9ngqxl7w3g16vfp"; depends=[entropy]; }; + IntEREst = derive2 { name="IntEREst"; version="1.22.2"; sha256="0cb3bwjcjh8ixqiys7279w12mwcx3fz5k31qpakc1mgj2nvgqsnf"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; + InterCellar = derive2 { name="InterCellar"; version="2.4.0"; sha256="1aqx98w4nnmb2xmrs70wqpywvq39qdmsna021ywxnyapd27w27l1"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; + InterMineR = derive2 { name="InterMineR"; version="1.20.0"; sha256="0rp6fyhlk3dp22z5anfzx2fjw23azm4hajv67spayh8j8q9fsmkm"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; + InteractionSet = derive2 { name="InteractionSet"; version="1.26.0"; sha256="14fb780f2g24ay28dy9xkmfziavbkj75v4vc2cmqbxfdsfp4yn0w"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; + InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.6.0"; sha256="14slb0g72d8ikfl7f2ir6gmxdkry6gsjgh3irxgkkjy9q880zpqi"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; + IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.20.0"; sha256="1l6bf5v1mvsmj4zqv19zfji52d6w1y08p1grqlzh6j01xjhvpz5a"; depends=[FGNet igraph knitr]; }; + IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.16.0"; sha256="1a298xaf8ricx09bv8hxy4d67ii57vz53rbac2kqszdg2pkfayzp"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; + IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.14.0"; sha256="1rm1vspgfd2733y1y828awz4hwn3qqhmfsx8lld6814iqrv63mxh"; depends=[IsoCorrectoR readxl tcltk2]; }; + IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.20.0"; sha256="06kcx0a7xxzqhf4y8l69my5chh06sfahsaz6anhana7shym3yif5"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; }; + KBoost = derive2 { name="KBoost"; version="1.6.0"; sha256="1w7m30dpjwbkgvvhvllgycnrzalah4lnan08xpr3cyx7nbr0pbsb"; depends=[]; }; + KCsmart = derive2 { name="KCsmart"; version="2.56.0"; sha256="1v7hl0lwr407fap71q8wsdz3d3ac2nq1blaz9wn8jb5j3yqkdwy3"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; + KEGGREST = derive2 { name="KEGGREST"; version="1.38.0"; sha256="0623p6px259v000pp14c2rknjgivx9c90b626q9bln0qw6wy97zc"; depends=[Biostrings httr png]; }; + KEGGgraph = derive2 { name="KEGGgraph"; version="1.58.0"; sha256="0hpsb009qmhy9p67d5wd0cl60smhgjlhxsz5f52i1c6qy4jk1niq"; depends=[graph RCurl Rgraphviz XML]; }; + KEGGlincs = derive2 { name="KEGGlincs"; version="1.24.0"; sha256="1xq10x5cirp2x3amrvprggsf8mvibfh40wa7fdnmkj8y2igf2r4z"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; + KinSwingR = derive2 { name="KinSwingR"; version="1.16.0"; sha256="051z4fcwis14ic4mz36d4aiixx3m6nndi2kj3yzykf1p1hwksq3g"; depends=[BiocParallel data_table sqldf]; }; + KnowSeq = derive2 { name="KnowSeq"; version="1.12.0"; sha256="0cxr3f67654h3nyjm4yaghw22wdb67jqg37685haffv1dkvfkcwl"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; + LACE = derive2 { name="LACE"; version="2.2.0"; sha256="16z28avyljma30kpp4ygw76yc7h3brz4sldpr6zailnrqaxkrzmd"; depends=[biomaRt bsplus callr configr curl data_table data_tree doParallel dplyr DT foreach fs htmltools htmlwidgets igraph jsonlite logr Matrix purrr RColorBrewer readr Rfast shiny shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyvalidate sortable stringi stringr SummarizedExperiment tidyr]; }; + LBE = derive2 { name="LBE"; version="1.66.0"; sha256="00460w36ayf0b9ln7v42i3wwmxyfy1hdm0snc01gaxf5276mvrai"; depends=[]; }; + LEA = derive2 { name="LEA"; version="3.10.0"; sha256="0an9m4qca9slcp847zqxxc5mk26lmmlrd755r1pfircgaaixda3f"; depends=[]; }; + LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.24.0"; sha256="0xhrdq5s5cn6vvp2h1pp871vncmxjkr9dmzb9hrykpc8pfvbj9w7"; depends=[CAMERA xcms]; }; + LOLA = derive2 { name="LOLA"; version="1.28.0"; sha256="00fk1drjwc7smbykq3qcl382qqd7kcjpcamklq48pqgy2mbjyk9d"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; + LPE = derive2 { name="LPE"; version="1.72.0"; sha256="06wmkwx633a3jjqhcp586x9jqic51sxyy11l8zhipzvj07fcsy70"; depends=[]; }; + LPEadj = derive2 { name="LPEadj"; version="1.58.0"; sha256="0cm8hdwfs0nrxyf6z1xwfjkpxawlh9mszmng4jakppcr9rl843ir"; depends=[LPE]; }; + LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.8.0"; sha256="1fgvck20w1gix7slszgsjnss4b85mp0nkb9x4sl3a0nl9qfsjz1a"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; + LRcell = derive2 { name="LRcell"; version="1.6.0"; sha256="0n5z47b4gdfyrzqrjc7dw0ja2526k71axjr3001gdfm7mx09gvmv"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; + LedPred = derive2 { name="LedPred"; version="1.32.0"; sha256="11rjnc9l88hlfwz7ppmliisx3m55nllmnikxiwjr6a6fx7rbhnk4"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; + LinTInd = derive2 { name="LinTInd"; version="1.2.0"; sha256="0nxjy9lrfid73dspmxdpc7davcnckl63s9bl796r6vmwkkcqfy76"; depends=[ape BiocGenerics Biostrings cowplot data_tree dplyr ggnewscale ggplot2 ggtree IRanges networkD3 pheatmap purrr reshape2 rlist S4Vectors stringdist stringr]; }; + LineagePulse = derive2 { name="LineagePulse"; version="1.18.0"; sha256="197ki29dbnm5lidlp45nidvskxpa7mdhihmlfz6qkvnbfr8c3rhg"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + LinkHD = derive2 { name="LinkHD"; version="1.12.0"; sha256="02yr5lmqxkpsgqfb1jjzy1cd9mfcg2q50szjji3mdadyg2c8i8rg"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; + Linnorm = derive2 { name="Linnorm"; version="2.22.0"; sha256="0ndhvdd9gkqyayxqgj5320sgj15di7ji945lpdi3rj5lwldh7na0"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; + LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.52.0"; sha256="0jf0njw4xib0wf24k2g64jg3agglf0jc9fymcjvagc70z9pm18k3"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; + LoomExperiment = derive2 { name="LoomExperiment"; version="1.16.0"; sha256="1bjqg5krzxm3v1mcy208ccbs2d1aljkbpav6qz6zgwmwpsci99dz"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + LowMACA = derive2 { name="LowMACA"; version="1.28.0"; sha256="0j5233xziszwak65rypd9f8lsp25sdr4j5nm5kanj4d4wd0zsdqv"; depends=[BiocParallel Biostrings cBioPortalData data_table gridBase httr LowMACAAnnotation motifStack plyr RColorBrewer reshape2 stringr]; }; + LymphoSeq = derive2 { name="LymphoSeq"; version="1.26.0"; sha256="1wlyk3gpy7j5ml3n3xs6mmxi9bv1ixs6gw7i2rkb513wnrxb9bg7"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; + M3C = derive2 { name="M3C"; version="1.20.0"; sha256="1djgbnxsdp1w9hhc6346gmvad3x8avy8nc85gpvg9i4x52wcrn4j"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; + M3Drop = derive2 { name="M3Drop"; version="1.24.0"; sha256="1h8y27d0dnmg4k31wl2k556r4h7n7iq2536770z7ci0ir0i0y4b6"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; + MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.12.0"; sha256="1lxq7fanfypbzrh2il4ib9fplz6hmr0y3cdg9waplvrf1scqc8pp"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; + MACSr = derive2 { name="MACSr"; version="1.6.0"; sha256="0ksbmj8jh87nb60h1lfwz4gx40lpryc125dh554wsy48i0kv82cs"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; + MADSEQ = derive2 { name="MADSEQ"; version="1.24.0"; sha256="025ny68gcsd5pbj9g8vrnzymgq52nq72zbwsvgjl7f2b6jnbd6w9"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; + MAGAR = derive2 { name="MAGAR"; version="1.6.0"; sha256="145xnlnkpqmb18jawwizr53y4lw9d1nxc4k60lpvl2z2fn8hm3v5"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; + MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="2.2.0"; sha256="1p58hcsmhgia1rlr064nfbd3kf0rlmnvabxlr2hpkw8b1hmcvrz0"; depends=[Biobase clusterProfiler depmap DOSE enrichplot ggplot2 ggrepel gridExtra msigdbr pathview reshape2]; }; + MAI = derive2 { name="MAI"; version="1.4.0"; sha256="01cpiiwzxkar8zr4q6bs2mbkh1hqszr71gzmbbp9z0b88805arm8"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; + MAIT = derive2 { name="MAIT"; version="1.32.0"; sha256="0i5n1bjc8bn4cx5b17d57m6fhk4m486cqnj6cn1zyyw0zy8z5sg4"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; + MANOR = derive2 { name="MANOR"; version="1.70.0"; sha256="16b30bmyzml97cjdbh6h9ky5c4h5ws2a3g2xkxnd55sd3jg64jgx"; depends=[GLAD]; }; + MAST = derive2 { name="MAST"; version="1.24.0"; sha256="133ijkw5sd0gl38dfr7qfqvvp2df7lg6j8vkvy54zlpamkg6l2x1"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + MBASED = derive2 { name="MBASED"; version="1.32.0"; sha256="09v229vgxwhf3vx8nx2zb0g6rzqgfs91w44ly5y5r8rq2n9qa0lz"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; + MBAmethyl = derive2 { name="MBAmethyl"; version="1.32.0"; sha256="06jhcv8nw21qnzbf9law4dvrgga47di02q3124sf5v365zasnzr5"; depends=[]; }; + MBCB = derive2 { name="MBCB"; version="1.52.0"; sha256="1376537z1hzc3wb791nr13icp1h04z4jmfga2kszxsza4iw01hnr"; depends=[preprocessCore tcltk2]; }; + MBECS = derive2 { name="MBECS"; version="1.2.0"; sha256="10pyc41h3r2z5f0r7l7cg0cdyaxc2psm4q2d08dsddh8lpyc4v85"; depends=[cluster dplyr ggplot2 gridExtra limma lme4 lmerTest magrittr Matrix pheatmap phyloseq rmarkdown ruv sva tibble tidyr vegan]; }; + MBQN = derive2 { name="MBQN"; version="2.10.0"; sha256="138a7qfqcy904vlycbaif3wn9k1iwjafwvadbm3nscpz4k9x7phb"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; }; + MBttest = derive2 { name="MBttest"; version="1.26.0"; sha256="0jgyigd60bbqrkg640i6lv2lx6k52il0k9lnrcg67v5z0xrhrrqx"; depends=[gplots gtools]; }; + MCbiclust = derive2 { name="MCbiclust"; version="1.22.0"; sha256="09sl5bk56wgs0hih492n4qscdc6nx68w6nx0cxr0pjhdvgrybli0"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; + MDTS = derive2 { name="MDTS"; version="1.18.0"; sha256="1jbkv7fpqla3l9hpr1g6yn152653agvmnpcljgnl01mx392xnblf"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; + MEAL = derive2 { name="MEAL"; version="1.28.0"; sha256="17wy534ir65vjv69m55pd6vvfdhyl5w170wbm91r5l7ri1y0r9sl"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; + MEAT = derive2 { name="MEAT"; version="1.10.0"; sha256="150cs39xf0fnvwh76vvhf6f6ill5gqmh7cf2svhi19lldg4a569n"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; + MEB = derive2 { name="MEB"; version="1.12.0"; sha256="0axd2kahwy5sc6pp2bxdi4ahb6mwfsgbhbcm51l3g5jr898z8xia"; depends=[e1071 SummarizedExperiment]; }; + MEDIPS = derive2 { name="MEDIPS"; version="1.50.0"; sha256="1zb0w4d6qvzrb5xp0bfcc2mfxyj618ghw3ifhx9yhl7pqp8c8ny1"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; + MEDME = derive2 { name="MEDME"; version="1.58.0"; sha256="0qli5ipyv3q5qvpmp1cdqvgzl6giarg458apqyspzapwvvnn9967"; depends=[Biostrings drc MASS]; }; + MEIGOR = derive2 { name="MEIGOR"; version="1.31.0"; sha256="134253lygmwszxq2bj38iydd44rkas10cbjnz3dikn90gg0xhada"; depends=[CNORode deSolve Rsolnp snowfall]; }; + MGFM = derive2 { name="MGFM"; version="1.32.0"; sha256="0ih7hkziajyf9flxg0grfydqylvk0qr7v1wrbp1wyfh2d1bkl8l9"; depends=[annotate AnnotationDbi]; }; + MGFR = derive2 { name="MGFR"; version="1.24.0"; sha256="0r7gka30g17v22rsc059p6fwdcdpyb7n2pl93prpbkpv39lzcik3"; depends=[annotate biomaRt]; }; + MIGSA = derive2 { name="MIGSA"; version="1.21.0"; sha256="0b7w9lzi8xb1vzh7zahw7wh9jm7x1y04rs2gvvjmfbdfw085rdpm"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; }; + MIMOSA = derive2 { name="MIMOSA"; version="1.36.0"; sha256="10c07s0l2hshcvy4ym3mgq7k9569l5am2k4mx83wxwicidv607hi"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; + MIRA = derive2 { name="MIRA"; version="1.20.0"; sha256="0709kl7m1nj5jbvlsr4hfk5pr268vgvig8wq353wc7wqwq0j1yhn"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; + MLInterfaces = derive2 { name="MLInterfaces"; version="1.78.0"; sha256="0xnaghm65ydk01gzx5g38jyq7vfdw206c2w59k0qg8lhy9fqky9x"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny SummarizedExperiment threejs]; }; + MLP = derive2 { name="MLP"; version="1.46.0"; sha256="024h8mrwpfp6nkdzk6y6v0jhng1z78h47mxb36gy1mbklhknllbv"; depends=[AnnotationDbi gplots]; }; + MLSeq = derive2 { name="MLSeq"; version="2.16.0"; sha256="040gm8bnp110mhj05whkdrfl46lrm82fkyh6zba50aap8s2mp2b4"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; + MMAPPR2 = derive2 { name="MMAPPR2"; version="1.12.0"; sha256="0rvhvsyg2g1i8kipvg83c19nyr7xj061fnda9j771mbgagcbwma5"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; + MMDiff2 = derive2 { name="MMDiff2"; version="1.26.0"; sha256="0rhnlzci5zs2if3lzzn2nif3x72a42fpxkm6v83d3krw9kb9jvvd"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; + MMUPHin = derive2 { name="MMUPHin"; version="1.12.0"; sha256="0swazk8zh6s88994w5jd3n8s6mfhsis4i9hahihdxqah9i21ihwg"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor stringr tidyr]; }; + MODA = derive2 { name="MODA"; version="1.24.0"; sha256="17bfazy4wxb8idrn8frf43nrggn5n0w4bsxzmlhxjq0jm0c9ki25"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; + MOFA2 = derive2 { name="MOFA2"; version="1.8.0"; sha256="1i8i7n9iki16nmwmh5fs9afj0vqls38sj7vgxjacdsldcdwxz6h0"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; + MOGAMUN = derive2 { name="MOGAMUN"; version="1.8.0"; sha256="0rpz06rvxxxsgwb6xnk65mp2kz4jvhsr06qvkkknmyxc7q66ycb0"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; + MOMA = derive2 { name="MOMA"; version="1.10.0"; sha256="048lvnqa3wpi4bg7j8kh8dl358zppzrb3xg5ghdgk99xbanwmkqy"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; + MOSim = derive2 { name="MOSim"; version="1.12.0"; sha256="0x49p6f9q6vc8yn5nql9ryjd85zcimw3hy8n5wklwpx4bc3xadjs"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; + MPFE = derive2 { name="MPFE"; version="1.34.0"; sha256="0xr4cpvr83c7mmcbm99bbgg05qd20y5vha73m4if4d8ba1l7k2mv"; depends=[]; }; + MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.16.0"; sha256="1pgl0q4il2ywnbdb8pmhrwqlmjk4i5xkv8va933748fijy194pw8"; depends=[BiocParallel progress SummarizedExperiment]; }; + MQmetrics = derive2 { name="MQmetrics"; version="1.6.0"; sha256="0ch0qcgdzdz0035b2nm468q0vsvk9blws6szq7261znfvwmqpzxw"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; + MSA2dist = derive2 { name="MSA2dist"; version="1.2.0"; sha256="1248xchv7nk47w1lp61nqyhmmrfnm9vgjiiwn7ikb417hxcryay7"; depends=[ape Biostrings doParallel dplyr foreach GenomicRanges IRanges Rcpp RcppThread rlang seqinr stringi stringr tibble tidyr]; }; + MSPrep = derive2 { name="MSPrep"; version="1.8.0"; sha256="05bq27v2iwmrf92y6fyzczvnrwmpqy5b7faa3z4si68fhpa81p2s"; depends=[crmn dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; + MSnID = derive2 { name="MSnID"; version="1.32.0"; sha256="1ljhxbyq5pa32sh44f06cwcdq79xh5nm51bpx1i8xig3bvwyg7p9"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; + MSnbase = derive2 { name="MSnbase"; version="2.24.0"; sha256="16apm4qn7sbv06pk2i8k5z7qgkv0yq0h8ri32vikdplqxxh7h0cz"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; + MSstats = derive2 { name="MSstats"; version="4.6.0"; sha256="1zgzqrwmgwc68xdkwfaxpgsiqmypq03skn3ks83nfy1i4dfh3ni9"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo survival]; }; + MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.8.0"; sha256="1nnfjlxd3g69kscs0k1pywk4m9v1ixf6wwd909sl16gjb81ipmn9"; depends=[checkmate data_table log4r stringi]; }; + MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.6.0"; sha256="1hg9bjx9rwsdpj65mzd931lbyj4gb26x32mly4n1gkk1rf6iplry"; depends=[ggplot2 minpack_lm Rcpp]; }; + MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.4.1"; sha256="0hj10r3x1pql0497x3clk9wlv8xvbcvbv35q45x1ki8hfc5b3ifc"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; + MSstatsPTM = derive2 { name="MSstatsPTM"; version="2.0.0"; sha256="1mawiphdv4syh6ch4fa4jin7dfyqy3klxl4yla4vv25sal9byn3j"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; + MSstatsQC = derive2 { name="MSstatsQC"; version="2.16.0"; sha256="1x55d2saf8y45pp4rsln6km8iqzv14pzrsw3bjc2x6z67v837f5i"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; + MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.18.0"; sha256="0mbflhwlvrq18k6gavsj2d32ihxgnaww8zdncadxwnlgv6p083kd"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; + MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.12.0"; sha256="1xwb8bm92jlm2q1047v02x9v69h305l940s2a8dxjqpb42bhg1nf"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; + MSstatsShiny = derive2 { name="MSstatsShiny"; version="1.0.5"; sha256="01v9gnplf30jpycqkfssa5pi2fwv20shfqp1cd29m05canj1ni36"; depends=[data_table dplyr DT ggplot2 ggrepel gplots Hmisc htmltools marray MSstats MSstatsConvert MSstatsPTM MSstatsTMT shiny shinyBS shinybusy shinyjs tidyr uuid]; }; + MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.6.0"; sha256="01kbdkxdgy3rj04ihzr11ljr6mrwdlks97ygwdmdn3lf1jcsb49k"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; + MVCClass = derive2 { name="MVCClass"; version="1.72.0"; sha256="1yzb7m7vk50f9x1g8yb95wlmpccj3n4qgczz46lvhsk7hkifybzq"; depends=[]; }; + MWASTools = derive2 { name="MWASTools"; version="1.22.0"; sha256="1j6ixgir3mjx8xdclh2wisp82xx6ardm4rm6cz6ihdss2y34w6wi"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; + Maaslin2 = derive2 { name="Maaslin2"; version="1.12.0"; sha256="0ncvsywn9f8766gjb8nxzg82p3w30g8pjs85sy8s0bz9ilanpy89"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging lpsymphony MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; + Macarron = derive2 { name="Macarron"; version="1.2.0"; sha256="14fbijbjs73piprh6irlclr4yv87waiw6wv91sz5iw1pxrhp7pli"; depends=[BiocParallel data_table DelayedArray dynamicTreeCut ff logging Maaslin2 plyr psych RCurl RJSONIO SummarizedExperiment WGCNA xml2]; }; + MantelCorr = derive2 { name="MantelCorr"; version="1.68.0"; sha256="0d42m4zbc6pzfph2ydb11rcxq7h64fvv286zx1vh2scvi8j9655a"; depends=[]; }; + MassArray = derive2 { name="MassArray"; version="1.50.0"; sha256="0jxlnl466dgbn0817h5vk5h52cblyq1r48pvk9v76dzdc86llskx"; depends=[]; }; + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.64.0"; sha256="0l86gwq073nbx973v99b0lr9cz0pb72c4asmgj5w16jykicrnxn9"; depends=[]; }; + MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.10.0"; sha256="05a83gh5bvgadi2msgql5nmcgr8zp398rhdbmiqna608hqbymyq9"; depends=[matrixStats]; }; + MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.6.1"; sha256="1l0wnfyg3wgjr35qrqdh1916bklbvf7s43nsc05vqfsccs9a9a7k"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma MASS pcaMethods plotly proDA rlang rmarkdown Rtsne shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vsn]; }; + MatrixRider = derive2 { name="MatrixRider"; version="1.30.0"; sha256="1y4h57n7bg6hmaszq1bzf1qlyl2p378928inca7s68ygigibsh6l"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; + MeSHDbi = derive2 { name="MeSHDbi"; version="1.34.0"; sha256="1lg13vqlw3ibjpssbgwg1mpy778v22xnrr92wjfqpn8s4h057z9f"; depends=[AnnotationDbi Biobase RSQLite]; }; + MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.70.0"; sha256="1j6scmghs6mmi0wyfxy6hsf363r90wy7njq1334xaq4crbj3kag9"; depends=[]; }; + Melissa = derive2 { name="Melissa"; version="1.14.0"; sha256="005am6j14nxp0qwyvg870349szpybx3p0fmyiwjl3zghzma41xfa"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; + Mergeomics = derive2 { name="Mergeomics"; version="1.26.0"; sha256="1svw7jk4xv0xm66qr5w2m2fz9k4ifd8dv52b5157p5apv45jdd45"; depends=[]; }; + MesKit = derive2 { name="MesKit"; version="1.8.0"; sha256="04c6y9hv49db4dy8iv122lvawhc9f8vj66ipzh6qfvgbhqm8lgc0"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; + MetCirc = derive2 { name="MetCirc"; version="1.28.0"; sha256="1vpn9mpn6fyrvnp4rfc37s5z80bamb73d2w8484x1aim3vl467ly"; depends=[amap circlize ggplot2 MsCoreUtils S4Vectors scales shiny Spectra]; }; + MetID = derive2 { name="MetID"; version="1.16.0"; sha256="1zxhqvx6zhy8zxckih3pnafzqyivygq2iw5scvv0cv01hhkj1ac5"; depends=[ChemmineR devtools igraph Matrix stringr]; }; + MetNet = derive2 { name="MetNet"; version="1.16.0"; sha256="0d52ib51j44ic8zy0x1hmmi0q1l71n03qcra7sza0d46dpna6k8g"; depends=[BiocParallel bnlearn corpcor dplyr GeneNet GENIE3 ggplot2 parmigene psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; + MetaCyto = derive2 { name="MetaCyto"; version="1.20.0"; sha256="007lwh9yxvvdr5xhnrz3krh6v9vfi386jh1040x2cnw2x5p2hjjd"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; + MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.18.0"; sha256="1gjjp5qlmv26sd3fvrd8cgv3invckxr8ldjpizpqm4mxjzifxwpm"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; + MetaPhOR = derive2 { name="MetaPhOR"; version="1.0.0"; sha256="12imh3zwgrcaqc6gb0p6jhhb37km8j7n6cfp3d5s1rhcg2c180kx"; depends=[clusterProfiler ggplot2 ggrepel pheatmap RCy3 RecordLinkage stringr]; }; + MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.12.0"; sha256="08m1a3gpl2zx8yw60h3y430jflagcl7c5gn9wljl043vr84rnxpi"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; + Metab = derive2 { name="Metab"; version="1.32.0"; sha256="0qllncdvvab093gns9jb39kqvb4v8mm61aiva4hmy5hc2sk32blv"; depends=[pander svDialogs xcms]; }; + MetaboAnnotation = derive2 { name="MetaboAnnotation"; version="1.2.0"; sha256="03731wq7vx52l986fg32mw42f95mvzmrarppnrjfg80dwsnj9qgp"; depends=[BiocGenerics BiocParallel CompoundDb MetaboCoreUtils MsCoreUtils ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; + MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.6.0"; sha256="14y53snkyis1njx0vr7hy9jmn4lbw72k14x74spmsslcik2zadav"; depends=[MsCoreUtils]; }; + MetaboSignal = derive2 { name="MetaboSignal"; version="1.28.0"; sha256="1771mmdlk1i17lx51fcjv0lifc11rkk6x6qv5k03bq1fka5nfnnl"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; + MethCP = derive2 { name="MethCP"; version="1.11.0"; sha256="099jaadjfalvxpwq3k630yrqa1dfbp8rqn2fahz1rsha3y5z9bys"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; }; + MethPed = derive2 { name="MethPed"; version="1.26.0"; sha256="02vjnxzl72np2skgr6kj2vfkpf9i1ll0sdicfajr5rgsjzlnjpjh"; depends=[Biobase randomForest]; }; + MethReg = derive2 { name="MethReg"; version="1.8.0"; sha256="09vzarsmjm06fvgay0ysmi5f81g921dx513i1w2s6k97d8zv7z3f"; depends=[AnnotationHub DelayedArray dplyr ExperimentHub GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesame sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; + MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.30.0"; sha256="1rz12vh0j96wh7chzbk88f97fbg49g433ahb0c55lkgqn6ql7r1g"; depends=[Biostrings gplots seqinr stringr]; }; + MethylAid = derive2 { name="MethylAid"; version="1.32.0"; sha256="1kzfwvjb8rzv5jghvzgfc9p85727b0v13lc8dibn4016mgap06vk"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; + MethylMix = derive2 { name="MethylMix"; version="2.28.0"; sha256="0687kfbcj11x5idbdkkhymqxjl2f2k877wqzx506djmxlbqgac60"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; + MethylSeekR = derive2 { name="MethylSeekR"; version="1.38.0"; sha256="0db4fxli829x3na4adzmk41rf3zwp33xzmj49w9n9c8s8k5bhagj"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; + Mfuzz = derive2 { name="Mfuzz"; version="2.58.0"; sha256="01kdccfjs01a2ya22g9zig78pjvi96aq9d14js8jvf8h868wmffz"; depends=[Biobase e1071 tkWidgets]; }; + MiChip = derive2 { name="MiChip"; version="1.52.0"; sha256="1ichljymsal8mnanqck89243lwpf184r47jknd56ksvpn2s6a0ja"; depends=[Biobase]; }; + MiPP = derive2 { name="MiPP"; version="1.70.0"; sha256="08ini3nj077k7knp3zsmw33yc0wpsnszd75dnp9vdn141d1kvsmx"; depends=[Biobase e1071 MASS]; }; + MiRaGE = derive2 { name="MiRaGE"; version="1.40.0"; sha256="19jgv2sgqiqqyqcbfivj8a4qrb18ryyl74rpp3805iisx44rnbkl"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; + MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.4.0"; sha256="1pl2kd24h88xs0asby3zz2agx64carkd0sjm5l3mj1340b77qk5l"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; }; + MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.10.2"; sha256="0p74n2nkh341bknlkjsff4cm8hlbdnaxj4n35bhp07q6vlaclxf9"; depends=[ape Biostrings coin data_table dplyr dtplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar plyr rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; + MineICA = derive2 { name="MineICA"; version="1.38.0"; sha256="0qfk61qfw94r3ynzzvqxr9flswxbrfriw3n3yv499gk33cswb459"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; + MinimumDistance = derive2 { name="MinimumDistance"; version="1.42.0"; sha256="0r59a27nl6l28ck3mm4icpahplgxqpqzibiahw265fsl8yzx2zk7"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; + MobilityTransformR = derive2 { name="MobilityTransformR"; version="1.2.0"; sha256="0i8ljpjhvvfa1wg8ycm9pl0l0v3zwr4q7yr4n99nb88d54z89a5q"; depends=[MetaboCoreUtils MSnbase Spectra xcms]; }; + ModCon = derive2 { name="ModCon"; version="1.6.0"; sha256="1whwmf7qma0xz8bjqww6vr2idazgqlykd5mmf0xzryr1xdfbk54h"; depends=[data_table]; }; + Modstrings = derive2 { name="Modstrings"; version="1.14.0"; sha256="0r9smk5026pv6487xna1qsv9a6lc044xpzslbrddxyhgv0d8dz2m"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; + MoonlightR = derive2 { name="MoonlightR"; version="1.24.0"; sha256="17xff4sp4raqwcqgl2fc1j0k2s299cd3g0d5kdmmily7wvjnfrgz"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; + Motif2Site = derive2 { name="Motif2Site"; version="1.2.0"; sha256="19qjkcqrsag2gycwqmmn19d2vnkn2graa8sidhi1vl0nna5ycm36"; depends=[BiocGenerics Biostrings BSgenome edgeR GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS mixtools S4Vectors]; }; + MotifDb = derive2 { name="MotifDb"; version="1.40.0"; sha256="122ifxmbi0v3192cd9chq265i3dyw3hzwsndq3w97f4d68vll7gl"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; + MouseFM = derive2 { name="MouseFM"; version="1.8.0"; sha256="0cp0y793d4mvz5kh7rl7ysl969qvwg7dvrvqjh2i9hax47s865jg"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; + MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.6.0"; sha256="1n5mbd8mmsci8pvn3884i2vvr4dydw083kc851y4cx4ldbbfsfnk"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; + MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.6.0"; sha256="0r02fl6fq0g7l7mdlza89x1zkm3c16sf4wr1yrqygfmxf47q58xa"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; + MsBackendMsp = derive2 { name="MsBackendMsp"; version="1.2.0"; sha256="122s5agwac8wzsdj1igjyk8dgi5vgxd2bhymcp61sx5l1x7c0678"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; + MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.4.0"; sha256="13bkjbk5h4dr719942bghiqprrkgwg7z82vh88cn8jf8vg2bd43d"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; + MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.10.0"; sha256="1shrvb2vmvk1m6xk59jqpvrxi8vzcr978aalbx1gjcmaqf6abzcq"; depends=[clue MASS Rcpp S4Vectors]; }; + MsExperiment = derive2 { name="MsExperiment"; version="1.0.0"; sha256="031j106yaf1nal7nf5avg6kg216w3fplcnici8j45dwfd31kjis9"; depends=[IRanges ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; + MsFeatures = derive2 { name="MsFeatures"; version="1.6.0"; sha256="1q1224w31wdaagfv8ysc1w0d0n34y547c0jzkff1vxri9pb0w1j1"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; + MuData = derive2 { name="MuData"; version="1.2.0"; sha256="0xi8ldjv7nij11fggaqk91wdyf1nbv66hzqxy3y67hj0rkqxakv5"; depends=[DelayedArray Matrix MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + Mulcom = derive2 { name="Mulcom"; version="1.48.0"; sha256="0r900mhq2yi7gv1y9vh9lvaz97mk785ih8lvndncg0q6xg0mfq4v"; depends=[Biobase fields]; }; + MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.24.0"; sha256="00lhnqa4yz3lm5kl79bghad93iijihnassy2caf87czc540why09"; depends=[Biobase BiocBaseUtils BiocGenerics DelayedArray GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; + MultiBaC = derive2 { name="MultiBaC"; version="1.8.0"; sha256="0a3snl5djp9z0ggd39dmz0qgr0cvapsd2zs3xbwqah3dxafwsh2k"; depends=[ggplot2 Matrix MultiAssayExperiment pcaMethods plotrix ropls]; }; + MultiDataSet = derive2 { name="MultiDataSet"; version="1.26.0"; sha256="1qja5xd42wh8qbcil4hhnmh9zlby2gfglax2qbf5bzg3h6yzpy4g"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; + MultiMed = derive2 { name="MultiMed"; version="2.20.0"; sha256="09snrrgifz5wl9a0av87rccq8fh1d03h38i6x2lfmpak5m1vc270"; depends=[]; }; + MungeSumstats = derive2 { name="MungeSumstats"; version="1.6.0"; sha256="1sng3gra750pa0nm1jfpri2pha9n8rs1ncn42ddjfm330w45wqpg"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr IRanges jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; + MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.8.0"; sha256="071s1hfxln8zdr303g0ifmajd3kcfxxb6dds0pz67chc2gmgnd9q"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; + NADfinder = derive2 { name="NADfinder"; version="1.22.0"; sha256="0gbcfyda6liqimd4rcjbmfcjj4zymibfm94g46xv75ahypf5rm6z"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; + NBAMSeq = derive2 { name="NBAMSeq"; version="1.14.0"; sha256="12axvrs0zbp82n4lv89299vm6v696352d0jzm398vpbkdk3jn6y2"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; + NBSplice = derive2 { name="NBSplice"; version="1.15.0"; sha256="0yn7s7igshall34cflmdwvmknv8h1zdi6vg8svvcyn9fvzlgjdm8"; depends=[BiocParallel car edgeR ggplot2 MASS reshape2]; }; + NCIgraph = derive2 { name="NCIgraph"; version="1.46.0"; sha256="06y04lbp1wn1w9xy3lsqcdsycp4cdlrcyhga5kn1a4skb48bc6rc"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; + NOISeq = derive2 { name="NOISeq"; version="2.42.0"; sha256="1j0yafl5r1vsn99zkhvaz2mrwv37l4p8ldgiq09d9hxpjq9ls7i2"; depends=[Biobase Matrix]; }; + NPARC = derive2 { name="NPARC"; version="1.10.0"; sha256="0zph5lxw7ysra897jkbrmxjvb4zd5q2knl07xw8q5dyphjw8bbr3"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; + NTW = derive2 { name="NTW"; version="1.48.0"; sha256="0vx5swxmw76vba5wwl1qjyyb2dm7vg9wa7jsky93knhdl0s2fli9"; depends=[mvtnorm]; }; + NanoMethViz = derive2 { name="NanoMethViz"; version="2.4.0"; sha256="1ybbpc6v6al0vdgcbsyj921hpcyaaghdaf4cfwrd8wmlha75c2y3"; depends=[AnnotationDbi assertthat BiocSingular bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 ggrastr glue limma patchwork purrr R_utils Rcpp readr rlang Rsamtools RSQLite S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; + NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.28.0"; sha256="1fjmp78q3hsnslarb7w39r3kcvf8m9jrzcw4na6k55dqp5917lys"; depends=[Biobase matrixStats Rcpp]; }; + NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.6.0"; sha256="09g94vksn5zmwxj25q00ja3zk259psrj0vvn95hx4k5ldjby10ys"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; + NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.30.0"; sha256="1wfqrnbz2wcgxf2hz67z39zgy41m0ygf8a7gk1x22ry8y2irkipm"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; + NanoTube = derive2 { name="NanoTube"; version="1.4.0"; sha256="0gyjlj15bymib12b8j5ng66h6ixqj9w2arcd3x042djfqnx2crj9"; depends=[Biobase fgsea ggplot2 limma reshape]; }; + Nebulosa = derive2 { name="Nebulosa"; version="1.8.0"; sha256="1irjgvvycw1kx2nisqn7982hn843v4jncld7j712hv0kn2py3hn6"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; + NeighborNet = derive2 { name="NeighborNet"; version="1.16.0"; sha256="04yxkrc2qscx9ckday90b6hmar4zfqjdan0phmpgv622spnk16f3"; depends=[graph]; }; + NetActivity = derive2 { name="NetActivity"; version="1.0.0"; sha256="0jf406i34n4j3mx3x9543h5a8pngbj5hsl62kx38f387bvki6zb3"; depends=[airway DelayedArray DelayedMatrixStats DESeq2 NetActivityData SummarizedExperiment]; }; + NetPathMiner = derive2 { name="NetPathMiner"; version="1.34.0"; sha256="19pybhh43a9bzfgq7j4pk7w1flqx1mpz8pyqazgzichpgc5wbzx0"; depends=[igraph]; }; + NetSAM = derive2 { name="NetSAM"; version="1.38.0"; sha256="0d3b2h0d8d9zdqa1wjn3a6r55aa978gma4ajf7pgbp1p0y81smm8"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; + NeuCA = derive2 { name="NeuCA"; version="1.4.0"; sha256="0v6m022y7xb70f5z5hzsdg2rv5gdsldjd34bni8k9r8fd04d2q18"; depends=[e1071 keras limma SingleCellExperiment]; }; + NewWave = derive2 { name="NewWave"; version="1.8.0"; sha256="13zwn5qzh9mjhp6d72yndymwbmi4hb7s8qg6ji0nmqp53gj30lc8"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; + NoRCE = derive2 { name="NoRCE"; version="1.10.0"; sha256="0bmqgpiwm65wqr5wr6il131kllzpxc0mgx38adrncggcgxx3risg"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors stringr SummarizedExperiment tidyr zlibbioc]; }; + NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.16.0"; sha256="0fhm924r32sw5kjnpj9s79c6s6davb97whi2g8m62aii3c9di2zc"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; + NormqPCR = derive2 { name="NormqPCR"; version="1.44.0"; sha256="09cj78p7d11sichaxh5cgvd44i7mv8fs71j4sjianzky9y19474y"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; + NuPoP = derive2 { name="NuPoP"; version="2.6.1"; sha256="0gn1nbri1jpa0sf751fgyk4x80930g9dcw5cxim7i4n6isb33xaz"; depends=[]; }; + NxtIRFcore = derive2 { name="NxtIRFcore"; version="1.4.0"; sha256="1k923fqfjqfhlp648bs09xm1nb23gmh8n4y9jkdrdf05czyl73az"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges magrittr NxtIRFdata plotly R_utils Rcpp RcppProgress rhdf5 rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + OCplus = derive2 { name="OCplus"; version="1.72.0"; sha256="0517ib36cppxwf8kpyxcrm5hnvzd2z1gpahslfr7cns1r3si0byr"; depends=[interp multtest]; }; + ODER = derive2 { name="ODER"; version="1.4.0"; sha256="09zvr01cgwc3rbqlbj8dr6yh4ghv1yha6ygl222458iq8vcwf6cv"; depends=[BiocFileCache BiocGenerics dasper data_table derfinder dplyr GenomeInfoDb GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyr purrr rtracklayer S4Vectors stringr tibble]; }; + OGRE = derive2 { name="OGRE"; version="1.2.0"; sha256="0rnrg6xwi9xgxyzzk1qkyqh4k9yzq4q6wpliwgp8myf37yb8sjcy"; depends=[AnnotationHub assertthat data_table DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges rtracklayer S4Vectors shiny shinyBS shinydashboard shinyFiles tidyr]; }; + OLIN = derive2 { name="OLIN"; version="1.76.0"; sha256="060d4hflnrk17vs651cfh2dazyc6avp3gjvp9w52y8jbfnnwyvqg"; depends=[limma locfit marray]; }; + OLINgui = derive2 { name="OLINgui"; version="1.72.0"; sha256="0rqrzaz052kggi970whqiaf6sjs66dfcys1jrmx3909fz65cz9mg"; depends=[marray OLIN tkWidgets widgetTools]; }; + OMICsPCA = derive2 { name="OMICsPCA"; version="1.16.0"; sha256="0kirg4xnj19igyyxzybdjl3y833zniki2s20lcg6ygsr7kmrc1g4"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; + OPWeight = derive2 { name="OPWeight"; version="1.20.0"; sha256="17lhz1sf158y5adsw9ibww6jdmrsqihm6g9nhk673wvd8i9kg3s4"; depends=[MASS qvalue tibble]; }; + ORFhunteR = derive2 { name="ORFhunteR"; version="1.6.0"; sha256="0220mwfpxals7p03l11banpg7i593bxmk3dqp63jfx40m7v1x6v6"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; + ORFik = derive2 { name="ORFik"; version="1.18.0"; sha256="1pgp4g6jf1rmfgfk3ggms7fs5r81hygbcp3z4hj5l665sl5n22kz"; depends=[AnnotationDbi BiocGenerics BiocParallel biomaRt biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gridExtra httr IRanges jsonlite R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; + OSAT = derive2 { name="OSAT"; version="1.46.0"; sha256="1w86yf0bxrrfmmqknw59z2p2a0gfpnf54r139isd3irk0jhwwk50"; depends=[]; }; + OTUbase = derive2 { name="OTUbase"; version="1.48.0"; sha256="029f1hjvl5wzydn6k7436hhmgvhf7wgnmacf9wvar6gfj09n9n7d"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; + OUTRIDER = derive2 { name="OUTRIDER"; version="1.16.0"; sha256="14784178jlf7sddm9vkqvhpjsy4ppblacassna7bsx46xszx53jn"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; + OVESEG = derive2 { name="OVESEG"; version="1.14.0"; sha256="1lbv1p3pwggn1i75w4xkf4nfd4ff1fd9qkm65l7g7d98jinwa1wm"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; + OmaDB = derive2 { name="OmaDB"; version="2.14.0"; sha256="0hvsang8qlddd8andinl6p5ip823bg08c146p72glfa87bkf8xh6"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; + OmicCircos = derive2 { name="OmicCircos"; version="1.36.0"; sha256="0lqv04hjc2z3qnq4ijd9iym3mlbvxrhrxpaxdhs6w9dd32b8n8mh"; depends=[GenomicRanges]; }; + OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.14.0"; sha256="0wax0bplaibb27cvvqab3lpjb7qzy66dc5fs10mxadcbihl48fsb"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; + Omixer = derive2 { name="Omixer"; version="1.8.0"; sha256="080x94lhqml1fwvs0n8j6kvy2v2x3ij64960lhwjf8k1r8vyq4d5"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; + OmnipathR = derive2 { name="OmnipathR"; version="3.5.25"; sha256="1a0d4vf8i45h1fifswx9lhk6fk0z8sxfnav35psz9kvmxxab9698"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang rmarkdown rvest stringr tibble tidyr tidyselect withr xml2 yaml]; }; + OncoScore = derive2 { name="OncoScore"; version="1.26.0"; sha256="01qrlifbhfnq5liyiqa05pwjcr659v2i32ns2g6hc2crcf7nf5zz"; depends=[biomaRt]; }; + OncoSimulR = derive2 { name="OncoSimulR"; version="4.0.0"; sha256="1zxzl78l1vs1s4njs99mb5f97sxgffh6nycy0b5yhzw317kj1rdn"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; + OpenStats = derive2 { name="OpenStats"; version="1.10.0"; sha256="1jr0yshp4qy1869kv2cncy77kqnb2vi3m4cdh0v79w062qxbi7p7"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; + OrderedList = derive2 { name="OrderedList"; version="1.70.0"; sha256="06vl8miwzwl2i0ik3p50fs9z65d65bd793z5kvnn80dk2zbnj6qk"; depends=[Biobase twilight]; }; + Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.26.0"; sha256="1hawn8pp63kal5ml0sm3h1j1wnkq02z64sliyaf6apv7vl60ja9g"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; + OrganismDbi = derive2 { name="OrganismDbi"; version="1.40.0"; sha256="11l1xqwbqs129vxd6lxdaizpp6j08spyh6799rv5wqmlymap1ykw"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; + Oscope = derive2 { name="Oscope"; version="1.28.0"; sha256="0454f9yc0jmg3mcq9264wb5v2n8n0kaf801hlvsiy1xa3baj3h29"; depends=[BiocParallel cluster EBSeq testthat]; }; + PAA = derive2 { name="PAA"; version="1.32.0"; sha256="1zyms2s98bhjjl8bx86yznn87k8sv7dgadpgfall279q7av3vkgb"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; + PADOG = derive2 { name="PADOG"; version="1.40.0"; sha256="1irx2cv9k0wcx4aq1liyka9badgf4f20rxis7y4jz9wd9hhakilx"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; + PAIRADISE = derive2 { name="PAIRADISE"; version="1.14.0"; sha256="1mpz4afz6mx7a696pylzlar2jspkflkp15g4kzvk1sjkmwb6k9pj"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; + PANR = derive2 { name="PANR"; version="1.44.0"; sha256="0ma44mv7v0bcdzgzg575ky8h1mdffk426r18gjcg3v5xbjjargw5"; depends=[igraph MASS pvclust RedeR]; }; + PAST = derive2 { name="PAST"; version="1.14.0"; sha256="0mbqw5kffv7jfz37ydfmbwgcxf7baxghsbs163fpi9qksn37d1v7"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; + PCAN = derive2 { name="PCAN"; version="1.26.0"; sha256="0ya9s06dxrwzw0d4r08h5nddklyw3qbgwffbinwy84vgipkki0cz"; depends=[BiocParallel]; }; + PCAtools = derive2 { name="PCAtools"; version="2.10.0"; sha256="1r32ajjmrhlwl0ylwavlfzph6m01mq3y7r87x8mbkmqw9ld1y2fd"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; + PDATK = derive2 { name="PDATK"; version="1.6.0"; sha256="1s6j4j4s5vq2zfiz0axzmxcvfypwhn6wr1f0pm6f6kfaymkpp1xb"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; + PECA = derive2 { name="PECA"; version="1.34.0"; sha256="1yp4nw6agcrcy0ib4c293hd4j2waw5x7zjn2x175n3dq02hplpvq"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; + PERFect = derive2 { name="PERFect"; version="1.12.0"; sha256="1l9p2cs8hypihrl57bsyszzk9kwlp03pl3pskhgwsn5vzjmfgymg"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; + PFP = derive2 { name="PFP"; version="1.6.0"; sha256="06fg96phldv4rlkq4zrmvkkc19r57f7c9vrq51g8p54byj58rjbp"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; }; + PICS = derive2 { name="PICS"; version="2.42.0"; sha256="0snl32fk5vglww4rh3nmai86kxc55qwnhvbad2gqk821xh1idl70"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; + PING = derive2 { name="PING"; version="2.42.0"; sha256="1j4jx9lr1kia7880xvv87mv72ish490sn4kirkpp4jzcz3n99bh6"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; + PLPE = derive2 { name="PLPE"; version="1.58.0"; sha256="1v30v0i3awq8vfid77hgcwxallq0swarvrsszs1jff9wq9gnr6vi"; depends=[Biobase LPE MASS]; }; + POMA = derive2 { name="POMA"; version="1.8.0"; sha256="0ll61s9ylymsha2mvys36hr3ximx91ldbzb4k34gmy8rxjgb2ima"; depends=[broom caret ComplexHeatmap dbscan DESeq2 dplyr ggplot2 ggrepel glasso glmnet impute limma magrittr mixOmics randomForest RankProd rmarkdown SummarizedExperiment tibble tidyr uwot vegan]; }; + POWSC = derive2 { name="POWSC"; version="1.6.0"; sha256="08cahszklxj42cpaklzil7q3jkmrigsqkbbklfkq74q8sa65ry3j"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + PPInfer = derive2 { name="PPInfer"; version="1.24.2"; sha256="16nkqn6d8pakkbl3r2rvxzfjcsx5calyjcxnysy3g84lflv4lfid"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; }; + PREDA = derive2 { name="PREDA"; version="1.44.0"; sha256="1j2v7h7xajdlmbvi397qrn61w6zvrckql7hzzk0bhly3lcfsr5ij"; depends=[annotate Biobase lokern multtest]; }; + PROMISE = derive2 { name="PROMISE"; version="1.50.0"; sha256="0981l0yssnfjlxdqjv4r0a7a4gp01v1zqrpk9c19c1hpklzjzn9s"; depends=[Biobase GSEABase]; }; + PROPER = derive2 { name="PROPER"; version="1.30.0"; sha256="1fx832vinc5rfb52g2f62480sga3lh6hslz19v6whjadrqaxi1kv"; depends=[edgeR]; }; + PROPS = derive2 { name="PROPS"; version="1.20.0"; sha256="1arz8wq4k3dzsqzq39g95pyl934h3kdyqh2hahjpb2qpz0dnr1mk"; depends=[Biobase bnlearn reshape2 sva]; }; + PROcess = derive2 { name="PROcess"; version="1.74.0"; sha256="1vnj82yhc949hbn6crbqq6jk919b7fc43vrr4bbqls0czdajs42l"; depends=[Icens]; }; + PSEA = derive2 { name="PSEA"; version="1.32.0"; sha256="1rx7p8k6rwdx5lclz85h5qabkl0lvjprk6cx8xaaabg2g1i4d99y"; depends=[Biobase MASS]; }; + PSMatch = derive2 { name="PSMatch"; version="1.2.0"; sha256="03nkkx0chmz4ms9zkhjdjylzk4i3s1r51h955nn2qr236vi5h60p"; depends=[BiocGenerics BiocParallel igraph Matrix MsCoreUtils ProtGenerics QFeatures S4Vectors]; }; + PWMEnrich = derive2 { name="PWMEnrich"; version="4.34.0"; sha256="02rjdq4sbbb3w91p2k8bbbwwgb4caipbkj338lx0alc58ax0c0fh"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; + PanViz = derive2 { name="PanViz"; version="1.0.0"; sha256="19av4p7v215yb8scp6v161j1wj9ib98yxw7xkrryn7ad3j361a92"; depends=[colorspace data_table dplyr easycsv futile_logger igraph magrittr RColorBrewer rentrez rlang stringr tibble tidyr]; }; + PanomiR = derive2 { name="PanomiR"; version="1.2.0"; sha256="02kmlv258cvg7zqzb1wh48zxgbhpxqf3avfhlg2w0cf5kwmbxb2w"; depends=[clusterProfiler dplyr forcats GSEABase igraph limma metap org_Hs_eg_db preprocessCore RColorBrewer rlang tibble withr]; }; + Path2PPI = derive2 { name="Path2PPI"; version="1.28.0"; sha256="1psnkgi565gyv7jskpfjcsyvnlgarmqpa1ywzg9z6cfplfly550c"; depends=[igraph]; }; + PathNet = derive2 { name="PathNet"; version="1.38.0"; sha256="02371m21xh684hcrbhfdk9hg1jgcdgrnbn1h6vv7avaz6rc07iki"; depends=[]; }; + PathoStat = derive2 { name="PathoStat"; version="1.24.0"; sha256="17d3csjf8xxl3xq8kqyzkjlcd1xyq1wx5rln45nmancd3qsff9l4"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; + PeacoQC = derive2 { name="PeacoQC"; version="1.8.0"; sha256="06n9clc7bngw1fmbl0n25765svvc1r3n923ai50r9xpc75wygh0a"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; + PepsNMR = derive2 { name="PepsNMR"; version="1.16.0"; sha256="02i29jinawssqlb33wvj0h9w6cfcvamlyfxdynd38jmwx23l15l5"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; + PhIPData = derive2 { name="PhIPData"; version="1.6.0"; sha256="1gm1zr532vzz605sah2b2qmp95mnh68lqyp0kjb8l4qjz06vgawd"; depends=[BiocFileCache BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + PharmacoGx = derive2 { name="PharmacoGx"; version="3.2.0"; sha256="1wd6s9qsfhgc7krkhq26bmdgrcqz8w7nnl580hy0b0lqwnfrd86a"; depends=[Biobase BiocGenerics BiocParallel boot caTools checkmate coop CoreGx data_table downloader ggplot2 jsonlite magicaxis MultiAssayExperiment RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment]; }; + PhenStat = derive2 { name="PhenStat"; version="2.34.0"; sha256="1gjji1l1a39bbmq0dm533f9y10yg455zh8syz4ymp21ipshmh8x9"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; + PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.6.0"; sha256="0y6nay90b50b0cgg532vqk4cfdgvhcw4ianqxh3l4y8gz85136dz"; depends=[doParallel dplyr foreach igraph Matrix]; }; + PhosR = derive2 { name="PhosR"; version="1.8.0"; sha256="1g8ia2f1di5qd7rkgirgpzwmhxx1j2pmid8cqqpb3gmqv39dj5r7"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; }; + PhyloProfile = derive2 { name="PhyloProfile"; version="1.12.2"; sha256="007zr6fgrdrjg3g1zypcvh3966xzfwz4aghhivkcslyvl25smygv"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyFiles shinyjs xml2 yaml zoo]; }; + Pi = derive2 { name="Pi"; version="2.10.0"; sha256="09rv07k7sj6l5h00wm5z7hsq1nr084i4xdpy6sgc1kb7hksihcs0"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; + Pigengene = derive2 { name="Pigengene"; version="1.24.0"; sha256="0djknlcwhwfswi3wvy9zmi11ldv97zfq2p5rh5xv3ma4zfhrbh9d"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI DOSE dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; + PloGO2 = derive2 { name="PloGO2"; version="1.10.0"; sha256="0sq2x68bcslzldrh367hh9r1vrnk56mkc6iqiq3zy7rzgxhjigpl"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; + PoDCall = derive2 { name="PoDCall"; version="1.6.0"; sha256="1x368wc96nn4k17kbbwavriqfp6qywxivdas6sp069c053xkjxrq"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; + PoTRA = derive2 { name="PoTRA"; version="1.13.0"; sha256="1a32d1wndb24pxza3h53yddj9z2clff5srny2k00pbbfq1h99mjf"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; }; + PrInCE = derive2 { name="PrInCE"; version="1.14.0"; sha256="07q3x6rx3raz187akwfdd01x57hxbf6njbrydnl9r6a8q0b0gb0b"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; + Prostar = derive2 { name="Prostar"; version="1.30.2"; sha256="17aljj7r41cmgvf2xfvjglglf4zrcajdm0zm2vifvlmkr2bs95pi"; depends=[DAPAR DAPARdata data_table future ggplot2 gplots highcharter htmlwidgets later promises rhandsontable shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes tibble vioplot webshot]; }; + ProtGenerics = derive2 { name="ProtGenerics"; version="1.30.0"; sha256="1k5pg0zbhz9mjsl5i3j33p7qv2adax2lf7yqv6qz229fxxaxs5li"; depends=[]; }; + ProteoDisco = derive2 { name="ProteoDisco"; version="1.4.0"; sha256="0df39hwg5kmc900b57dxw76mz11a7h4nb9kq1z1wl6ampx27w0ks"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; + ProteoMM = derive2 { name="ProteoMM"; version="1.16.0"; sha256="00hivafxnk9kcji6k4r0ajrdlnlmpmaij6jqiaj9ghfcdqza2fjz"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; + PureCN = derive2 { name="PureCN"; version="2.4.0"; sha256="0x69n8v5fadx3my9s68j9wadicd8q07gmh40drrcd99n8xfrp41b"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; + Pviz = derive2 { name="Pviz"; version="1.32.0"; sha256="12j3piy8c0d3vd6kqn0i65g96xj8x8p5px4rprw2mw9jnaydavwj"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; + QDNAseq = derive2 { name="QDNAseq"; version="1.34.0"; sha256="1qv3vmc6i7r35pqhi45hmvg8h7v3bl82lv7yifs59k250zsdls59"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; + QFeatures = derive2 { name="QFeatures"; version="1.8.0"; sha256="00f2j2kmvap9h7xxayy83g91zm41jd52vi9iyxhfk1lvmzpipa7h"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; + QSutils = derive2 { name="QSutils"; version="1.16.0"; sha256="09zfjc1m8h7v18mccp3krk732ls3z64q21179r0dy4snb0xighln"; depends=[ape BiocGenerics Biostrings psych]; }; + QUBIC = derive2 { name="QUBIC"; version="1.26.0"; sha256="0cq98y7gl1ifx45j0ilwf70h873hwfdv3y4n2yxalk1rqbvwg5dg"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; + Qtlizer = derive2 { name="Qtlizer"; version="1.12.0"; sha256="1mqf7cbm9x0jvz52cmks6kyv8i3ccc80m5pn7z4mrmip782ddjav"; depends=[curl GenomicRanges httr stringi]; }; + QuartPAC = derive2 { name="QuartPAC"; version="1.30.0"; sha256="19r8h639iyc32p2yxz2j89igwl2286jv08hw5a05k4532qdkygj5"; depends=[data_table GraphPAC iPAC SpacePAC]; }; + QuasR = derive2 { name="QuasR"; version="1.38.0"; sha256="1pp94368aj5wx0zcnbbm6zrxrfhixmbcdzpj2lka3blvq5j7sncj"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; + QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.32.0"; sha256="1ij17xccnz4m9wvvrwql4ha790qj0x155286rkr9ybwww0ipr20i"; depends=[dplyr Rcpp yaml]; }; + R3CPET = derive2 { name="R3CPET"; version="1.30.0"; sha256="0xhb514qnxswsv58ycsfibi4yxbwfpxn6yp5mv891y7sdb6hkniz"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; + R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.48.0"; sha256="1xx4ssqw5x9y87hmb9h2xkqyvxl41nqfkarwzdlgfd3sqni808s9"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; + R4RNA = derive2 { name="R4RNA"; version="1.26.0"; sha256="13zscbrarxma3p49yfgvpj4rrycra4cnnlcxw8032g4y5v75jzpd"; depends=[Biostrings]; }; + RAREsim = derive2 { name="RAREsim"; version="1.2.0"; sha256="1r4am6k9q922wxxjdq84lbhvxql6padrgh811s73r99lfsxwfxg9"; depends=[nloptr]; }; + RBGL = derive2 { name="RBGL"; version="1.74.0"; sha256="0dccxsynfnhjzjk22hr5kg068zbg33g6kyhlhlhqh78582181j9m"; depends=[BH graph]; }; + RBM = derive2 { name="RBM"; version="1.30.0"; sha256="01842vqv2zl3n5y3xhzr07kclm5rhjv3i0cb315kzssbvrvgsfp2"; depends=[limma marray]; }; + RBioinf = derive2 { name="RBioinf"; version="1.58.0"; sha256="11sfsbbkz482m8jiz21czmhp2ha06ii9h1b6ww8gaka9y0pm8pgc"; depends=[graph]; }; + RCAS = derive2 { name="RCAS"; version="1.24.0"; sha256="0wja7m3b3zr0m8nwcq5m5appsr09jdwkvvvxzh2r5mhksn0abs6p"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; + RCASPAR = derive2 { name="RCASPAR"; version="1.44.0"; sha256="0v233p8lfgscqsi9d5sszbqhihqd44gs1rnvf8g8nh3090rc8asn"; depends=[]; }; + RCM = derive2 { name="RCM"; version="1.14.0"; sha256="1iaxkj8cm0f7vx2ypicls016kwfkqvarr3xway0n3brvzirmcv9m"; depends=[alabama DBI edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; + RCSL = derive2 { name="RCSL"; version="1.6.0"; sha256="0j2kcdkjpdlqg1ix0v2yq75w7phmhlrzzbaj3zwrljwzdr70wvh1"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; + RCX = derive2 { name="RCX"; version="1.2.0"; sha256="14fcipa1w7xpmvnq67lsk0xq03s9rc747jpx4w76xfwc1jy75799"; depends=[igraph jsonlite plyr]; }; + RCy3 = derive2 { name="RCy3"; version="2.18.0"; sha256="09rikpi8bkh3p7vpwip865vyw9gdr1n28y5azid6ja1wav315s3n"; depends=[base64enc base64url BiocGenerics fs glue gplots graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; + RCyjs = derive2 { name="RCyjs"; version="2.20.0"; sha256="0bkjyzphxn62hfmz2hpk9lbxikgv0gp56smss79abi3yx0841dpg"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; + RDRToolbox = derive2 { name="RDRToolbox"; version="1.48.0"; sha256="1i9ma3pi9b425jrgv0pry03id9dc3k0yjr7spfnvbz4xz8ifgllm"; depends=[MASS rgl]; }; + REBET = derive2 { name="REBET"; version="1.16.0"; sha256="18a201k2zdin3k5g5vpwlq8n6z2h6z7849zcz8rf3yzlfmbs2mx1"; depends=[ASSET]; }; + REDseq = derive2 { name="REDseq"; version="1.44.0"; sha256="13r04w1alpjs11kfm6cfqa4rf54z6yhhn8q754jxn8v2ivp7cwgy"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; + REMP = derive2 { name="REMP"; version="1.22.0"; sha256="1rqkvm1s7wb2cbkr8c8dxb8qaydspz83q03xdfgc656jd7431i70"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; + RESOLVE = derive2 { name="RESOLVE"; version="1.0.0"; sha256="1r91nmzw7ll22qxazaagxi0zv8l5kh6rf54alfy9nqx5w10ni78y"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 cluster data_table GenomeInfoDb GenomicRanges ggplot2 glmnet gridExtra IRanges lsa NMF nnls reshape2]; }; + RGMQL = derive2 { name="RGMQL"; version="1.18.0"; sha256="1yl0rpah721z0h8r5bsqhrj4nmyqn23sfn3zld59wc9pn8azsqsv"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; + RGSEA = derive2 { name="RGSEA"; version="1.32.0"; sha256="1psrm5qd7kk1h01rb73mf0zi159lpd59awfhslkxaq8b1ifck7ny"; depends=[BiocGenerics]; }; + RGraph2js = derive2 { name="RGraph2js"; version="1.26.0"; sha256="0yvjp8hzbiivmkb2bbwkgznmkgwxr31sr76hjh25cqgfwgj0rrzr"; depends=[digest graph rjson whisker]; }; + RIPAT = derive2 { name="RIPAT"; version="1.8.0"; sha256="0z0g9k09g4g0i2h0lq2f651q0336q6x3rzli6xh7a4pj4gqcbnsw"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; + RITAN = derive2 { name="RITAN"; version="1.22.0"; sha256="0ha5qn1l4518ks8bghsb4lmj1ch3ak4gwq8m29xq5wcyg932np7m"; depends=[AnnotationFilter BgeeDB dynamicTreeCut EnsDb_Hsapiens_v86 ensembldb GenomicFeatures ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; + RIVER = derive2 { name="RIVER"; version="1.22.0"; sha256="0ycb97npqrhavm6i8idhdaah3h4i7m73zmqnlki2spg49j6qkh1p"; depends=[Biobase ggplot2 glmnet pROC]; }; + RImmPort = derive2 { name="RImmPort"; version="1.26.0"; sha256="0hwwkdzzh118vw4k3pxxmd7yzxdbjwp5z0vzss1pvmkgidf4sy94"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; + RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.22.0"; sha256="13k01nclhl82kjyh16r5g2xx6f6inp5m7fkkd45pvahalx1cq0lm"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + RLMM = derive2 { name="RLMM"; version="1.60.0"; sha256="1kqxvrjfqf0l98nlj5fx36gh3n5gnxsks0gxpg9b5civjnmaxilv"; depends=[MASS]; }; + RLSeq = derive2 { name="RLSeq"; version="1.4.1"; sha256="12dbvvh7vg9bzyj64jans0p165lz2ca26d9ilg3nka4qii37q23m"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR RLHub rtracklayer valr VennDiagram]; }; + RLassoCox = derive2 { name="RLassoCox"; version="1.6.0"; sha256="0hh84631r6rm5sxpp40v8blrf142rlm4sfyww933yw9khvyxvbnc"; depends=[glmnet igraph Matrix survival]; }; + RMassBank = derive2 { name="RMassBank"; version="3.8.0"; sha256="1zlv2vyarj0przwdn39iybk9fkghqbiic5y24i603jzajv9hqxz0"; depends=[assertthat Biobase ChemmineOB ChemmineR data_table digest enviPat httr logger MSnbase mzR R_utils rcdk Rcpp RCurl readJDX rjson S4Vectors webchem XML yaml]; }; + RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.10.0"; sha256="0zj6ham16bjycdh1qids0pfq6xdbp8y1hdjm966ba6cwl9xxwl5d"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; + RNASeqPower = derive2 { name="RNASeqPower"; version="1.38.0"; sha256="1f8jiljxacqjj0vf2v01fclhl3i0w7xddxcs6ajxzlmmpqs19b8a"; depends=[]; }; + RNASeqR = derive2 { name="RNASeqR"; version="1.15.1"; sha256="0rkn98mp6d9lzm82r37mixfq7vka71c9nwkzkixajpsba2915sh6"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; }; + RNAdecay = derive2 { name="RNAdecay"; version="1.18.0"; sha256="1zf5gg25lyn4z8yq8mmysxzpm7jkpspawyv7siwzb0m80h59rpiy"; depends=[ggplot2 gplots nloptr scales TMB]; }; + RNAinteract = derive2 { name="RNAinteract"; version="1.46.0"; sha256="18yhkkwq4gvwvph8pz53cl7id644vv1n2d3jngwrfk918jay5d0s"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; + RNAmodR = derive2 { name="RNAmodR"; version="1.12.0"; sha256="0xhz2fz0lw2yw14cw8fcnghk9y9q0v75b4bkf7bg5v0jrcgg6bc4"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; + RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.12.0"; sha256="1ckd5n79psinpvw45ysnkw8n3r8g0njbd9f1a555dwl29vb7ay83"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.12.0"; sha256="08nkscr9164gpdyp3g3ypm7l7gn5lj034nj7hwmgjp4qihsnfliy"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; + RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.12.0"; sha256="14zkhq86sz7sj9nacfcsqb9g5w3nx9318aaqfqhkckk17nvrzhcg"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAsense = derive2 { name="RNAsense"; version="1.12.0"; sha256="130hbqhsvqm0sb39051b7s2asmvxv3pij0a5d03g7v828cbc96fh"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; + ROC = derive2 { name="ROC"; version="1.74.0"; sha256="00pw6xmxjzprbx8wskq6gbyqkfak764vic5yxrzs6wpram352vmv"; depends=[knitr]; }; + ROCpAI = derive2 { name="ROCpAI"; version="1.10.0"; sha256="0inil870ingad37gv6bc0hakizwb7lpg8s9disz888314f3xqmwz"; depends=[boot fission knitr SummarizedExperiment]; }; + ROSeq = derive2 { name="ROSeq"; version="1.10.0"; sha256="09jx7m25y7c0ihsv9a6cj002395kg3whrvzphgwbcipwdly1ag8f"; depends=[edgeR limma pbmcapply]; }; + ROTS = derive2 { name="ROTS"; version="1.26.0"; sha256="1wirblji4ckiwrvnh14cfwc9cjypazbaqr00ka5ndyz39cc31shn"; depends=[Biobase Rcpp]; }; + ROntoTools = derive2 { name="ROntoTools"; version="2.26.0"; sha256="0x0icx2r3vdn2a3615hfaqgp95p0d4cwz64231hqg1xji63b0q0s"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; + RPA = derive2 { name="RPA"; version="1.54.0"; sha256="1981822904nc6slkqs8mhcm82ys3s8l0yjcbg0n7ki7pibfyd87g"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; + RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.10.0"; sha256="07d5skr8cp0hyjbs7whw4h8scrf2w4hyn0wzj3khqdss53zmmr2m"; depends=[]; }; + RRHO = derive2 { name="RRHO"; version="1.38.0"; sha256="1fng44mhqxjq4xczw7hj32v09l1dl58azfd8cgc9jg1j2d5whjs6"; depends=[VennDiagram]; }; + RSVSim = derive2 { name="RSVSim"; version="1.38.0"; sha256="1zby1b7zic28x32m7w39lnp4cc1ksip08k5xq30wa7radlafagfn"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; + RSeqAn = derive2 { name="RSeqAn"; version="1.18.0"; sha256="0fjcwm3fw13yv3vdawwdbmbqws3n47f5s10rcvllm3wrbb1zrwb6"; depends=[Rcpp]; }; + RTCA = derive2 { name="RTCA"; version="1.50.0"; sha256="1jd5rknlbhdi650xg1isqxmgvi797c4jimn53x4nzaq88b8rabsc"; depends=[Biobase gtools RColorBrewer]; }; + RTCGA = derive2 { name="RTCGA"; version="1.28.0"; sha256="1h7x1hb7lnjaq842k72l76j7l4d9130vfh8flvsjvzyc3l98cywq"; depends=[assertthat data_table dplyr ggplot2 ggthemes htmltools knitr purrr RCurl rmarkdown rvest scales stringi survival survminer viridis XML xml2]; }; + RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.28.0"; sha256="0w02191nj94wapywy43r33f04ck92mww49lg1gik38pbafaahv68"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr limma RaggedExperiment RCircos RCurl RJSONIO rvest S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; + RTN = derive2 { name="RTN"; version="2.22.1"; sha256="0ga96f1qmbq5a8nxb94b60ml2fwynnz590xjbzcx1g5vhrblkj42"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; + RTNduals = derive2 { name="RTNduals"; version="1.22.0"; sha256="0m3h0rkix48pr4jywvm0h1pbqlv62gdzq3safwgqpgb7m0pg6d08"; depends=[RTN]; }; + RTNsurvival = derive2 { name="RTNsurvival"; version="1.22.0"; sha256="00naywzamklldsvipyg3q2c16s84y8cw1bngdw2l1d8yra4qpq9r"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; + RTopper = derive2 { name="RTopper"; version="1.44.1"; sha256="0g31606wsd8z2rpriad2fk9v8n27vp6gyk02nmq46s9c0jpf3s7p"; depends=[Biobase limma multtest]; }; + RUVSeq = derive2 { name="RUVSeq"; version="1.32.0"; sha256="1qb4k7pm8w86d2p9q2r4n63iyi34wdib5x9rsjx4vhcxrnzyyygm"; depends=[Biobase EDASeq edgeR MASS]; }; + RUVcorr = derive2 { name="RUVcorr"; version="1.30.0"; sha256="1g4krs3d7sr56chapaxxkr4bxyays8lv6kkdds8b3q89acwzq66l"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; + RUVnormalize = derive2 { name="RUVnormalize"; version="1.32.0"; sha256="0cn38bdc72qw5g9qwwpaql72684501nrk562xpvymw5nkgw28v6i"; depends=[Biobase RUVnormalizeData]; }; + RVS = derive2 { name="RVS"; version="1.20.0"; sha256="0cm8j9j1s77lklgadgbb1i774l2b2s62dsjg8y1i1w4mnb9a1sn9"; depends=[GENLIB gRain kinship2 snpStats]; }; + RadioGx = derive2 { name="RadioGx"; version="2.2.0"; sha256="1n11dkbqrlxgv6asl0qdd9d4xwbbciyh6ag5dhgkzv7fyp1kxd12"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; + RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.22.0"; sha256="0gclfng9rhw32r3z22nc3bna87z45jq83y5czd3865g6lwvpp04l"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; + RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.18.0"; sha256="0s13jgk4si3a2bnqavk2n420kh3iggap7kbrjfawadnjdj2ic34c"; depends=[dnet igraph Matrix]; }; + RankProd = derive2 { name="RankProd"; version="3.24.0"; sha256="1dyjm4wwjq8aqx7sbr4jqxjw1d55w2jzdl6f8cxslc63q2sjnpa3"; depends=[gmp Rmpfr]; }; + RareVariantVis = derive2 { name="RareVariantVis"; version="2.26.0"; sha256="1bkww57sv3jim07cawhfkm856p3ylyv0a89k7mr3lrnxfgxgnll9"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + RbcBook1 = derive2 { name="RbcBook1"; version="1.66.0"; sha256="06ddf30kpdmv7zs4n4q0jnnk0fsp0vb5263haw9bky45v56v4ghl"; depends=[Biobase graph rpart]; }; + Rbec = derive2 { name="Rbec"; version="1.6.0"; sha256="1n6cl79lvd4h249mvm6bzgcdgdpnw2683imlqxi74wd5aviw5shw"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; + Rbowtie = derive2 { name="Rbowtie"; version="1.38.0"; sha256="1kbpqhidj2bwhp9gxqx2qjaby6fc2dfrnnyjkciswgxckis6h2pc"; depends=[]; }; + Rbowtie2 = derive2 { name="Rbowtie2"; version="2.4.0"; sha256="05cczwkhv7kfnhlr0qznk6vdjncaj907895923f8mwx4j4cy5gcz"; depends=[magrittr Rsamtools]; }; + Rbwa = derive2 { name="Rbwa"; version="1.2.0"; sha256="0s6a4miawnsicysq9g8k0c5aycrq5bnx8pq07hsd86pbbmw57nhx"; depends=[]; }; + Rcade = derive2 { name="Rcade"; version="1.39.1"; sha256="05cli4h96xcsf6xas9z5ma8bzh10grlwkfgmz4a115ykblwyaj4r"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; + RcisTarget = derive2 { name="RcisTarget"; version="1.18.2"; sha256="02lz2m2zhwy1dvmjvlss6qg0dh574qhnvn7al3wx7ck1hkz0dgi2"; depends=[arrow AUCell BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges GSEABase R_utils S4Vectors SummarizedExperiment tibble]; }; + Rcpi = derive2 { name="Rcpi"; version="1.34.0"; sha256="0y64c3z7g8vsziphq39wypcncd3alvakd3ndwv7fgijpxf1rq4hf"; depends=[Biostrings doParallel foreach GOSemSim rcdk RCurl rjson]; }; + Rcwl = derive2 { name="Rcwl"; version="1.14.0"; sha256="17g2k748n4p7v7xvw5lrl5sw31w363hiqj8iaq6mclil7pyi90d7"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; + RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.14.0"; sha256="0b5v4x4v0ygkbfc8f8310bw2q8zsmqf9f8f2rynqmd5r7r5c8518"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; + Rdisop = derive2 { name="Rdisop"; version="1.58.0"; sha256="0109isvqjf18y5nryw98kvc4m5jq63jvlxlvdm7sqqikcq6irraj"; depends=[Rcpp]; }; + ReQON = derive2 { name="ReQON"; version="1.44.0"; sha256="1r4dzwnqv6a4zy5q9l3axqq23sbk9pjfb2y3fmwxjvdwq6c1qnp0"; depends=[rJava Rsamtools seqbias]; }; + ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.6.0"; sha256="0dwzamd82n598bj80cjp49mzjdfwrf4ajkb42fcp67j1w6zh6g73"; depends=[data_table doParallel foreach httr jsonlite magick]; }; + ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.12.0"; sha256="09sd33dji4bz6ym9hf1gpiamqm0cz45120p2k9rq70pwvra1ipcn"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; + ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.6.0"; sha256="0by0k2gj48y3ng0ckn46g2nfxn4jkh6qdd49w07bqvx8bmap1k3m"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; + ReactomePA = derive2 { name="ReactomePA"; version="1.42.0"; sha256="06994hk9nrzlgz8sby61656rdbf1r954v71djl1i7141dgw5rif2"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite gson igraph reactome_db]; }; + ReadqPCR = derive2 { name="ReadqPCR"; version="1.44.0"; sha256="1ss2mz31v2hps9hs34iz6cswynizw2qy64jzy72fgk4zi7a37wkv"; depends=[Biobase]; }; + RedeR = derive2 { name="RedeR"; version="2.2.0"; sha256="0icnd1cbmi410grzy0gxn7d8wp7avxffvzr8hk4qj6n2j46pd1y0"; depends=[igraph]; }; + RedisParam = derive2 { name="RedisParam"; version="1.0.0"; sha256="0jlkgkgfi7y5mmsqphp18qg1vnmrryq6xl6hdmafnh1skpn01mzn"; depends=[BiocParallel futile_logger redux withr]; }; + RefPlus = derive2 { name="RefPlus"; version="1.68.0"; sha256="1gi3z78g5z85sawqc4g056m8wgnbddyc0x9pdr0kjxr80kmm8jm3"; depends=[affy affyPLM Biobase preprocessCore]; }; + RegEnrich = derive2 { name="RegEnrich"; version="1.8.0"; sha256="0pjscj7zsd7kcmv23pndwasy4nf80ji8ynprl1xv1gxy0wbazxd4"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; + RepViz = derive2 { name="RepViz"; version="1.14.0"; sha256="0pbnca9srv6r5h5bin80xx95b9vx25y2kgfznydl6h6dp8vrxjdm"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; + Repitools = derive2 { name="Repitools"; version="1.44.0"; sha256="148m0pnp40bc8hnq72gxivyhylnzjwh5bwpsv6yvjjc5d9b4h003"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; + ReportingTools = derive2 { name="ReportingTools"; version="2.38.0"; sha256="1nrgnb002qv0yzmrvg59i9b5wzxda0fdkrmdi6vr15g0g7j3yry0"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; + ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.8.0"; sha256="0zqifr1zhsfhrkjlp0ajqiqc9f96yz8zr13yhl19lvw30pwg9rj9"; depends=[DelayedArray Matrix S4Vectors]; }; + Rfastp = derive2 { name="Rfastp"; version="1.8.0"; sha256="0vc03bch0j2zv468sb7prnc4ppxj45c21sgzkxx22gx019889qf2"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; + RgnTX = derive2 { name="RgnTX"; version="1.0.0"; sha256="1a70hwc1268qf0z2wyan1zgkgjc1z4fgbb8xlrbmv8nq0hblxfs7"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges regioneR S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + Rgraphviz = derive2 { name="Rgraphviz"; version="2.42.0"; sha256="0blymdax10zzg2lpj4hgvyh9c01b1qaivrc0gx95swji37zkqnwm"; depends=[graph]; }; + Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.20.0"; sha256="0zxgpc2krfwqzm8c05cdlfs3dyyf5ll43ff9mw8xzj89wcmlcfx7"; depends=[]; }; + Rhisat2 = derive2 { name="Rhisat2"; version="1.14.0"; sha256="19dc9fadgl55icqc5xv834kigicxxr6cny83247jjbgf5zp16piv"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; + Rhtslib = derive2 { name="Rhtslib"; version="2.0.0"; sha256="1ri76wwv44hgxji2bmlqi6v8gbvhr72q0d6nlgpfgfwb9sgvz62h"; depends=[zlibbioc]; }; + RiboCrypt = derive2 { name="RiboCrypt"; version="1.4.0"; sha256="0656cgcb5k2ky3850pf7il61dr5nb3i2cdk93x3xllcacp64h4mm"; depends=[BiocGenerics BiocParallel Biostrings data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges ORFik plotly rlang]; }; + RiboDiPA = derive2 { name="RiboDiPA"; version="1.6.0"; sha256="16i271hdibwv29883wxrzjhcilri4ydnyq5znl0dcqj2fbfr3y46"; depends=[BiocFileCache BiocGenerics data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; + RiboProfiling = derive2 { name="RiboProfiling"; version="1.28.0"; sha256="0wmmpcabi1ngwmvfhxkp44kj1wvzyrcckkrzpjlzcq016lr67iwn"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; + Ringo = derive2 { name="Ringo"; version="1.62.0"; sha256="0l9lpf6a2cj88hm75f8qy7h13lvwc1ldykvqkd0zxzdwx1s64gzr"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; + Risa = derive2 { name="Risa"; version="1.40.0"; sha256="1id6xgm74zj1h1kig2apg119ms8n6z9pnjfwyxlbkdzyyn040rl0"; depends=[affy Biobase biocViews Rcpp xcms]; }; + Rmagpie = derive2 { name="Rmagpie"; version="1.54.0"; sha256="00ys66bbj8c61dr23zj1r0gn5lkmih15b2cbcvxxllzyy9smcdpa"; depends=[Biobase e1071 kernlab pamr]; }; + Rmmquant = derive2 { name="Rmmquant"; version="1.16.0"; sha256="0x8s2whkg9x3r1hk973zwkaby2d616cvfzkg3qp77nqn0sip91r8"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + RnBeads = derive2 { name="RnBeads"; version="2.16.0"; sha256="1cjzdwfjcb4wqwm5kwzyvf7f6c3glxjvhi4w9f26n1g9ifli9725"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; + RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.8.0"; sha256="0v120ckw1b4j3fm80amm7qihrrczh3s291n2snrpai34xhpfbrva"; depends=[biomaRt dplyr edgeR ggplot2 ggpubr heatmap3 KEGGREST matlab Rcpp recount RnaSeqSampleSizeData SummarizedExperiment tidyr tidyselect]; }; + RolDE = derive2 { name="RolDE"; version="1.2.0"; sha256="0agxqynb58ky0z0dzhz3j7c2n1yz4njwk651jjikb9z3c4k67kiv"; depends=[doParallel doRNG foreach matrixStats nlme qvalue rngtools ROTS SummarizedExperiment]; }; + Rqc = derive2 { name="Rqc"; version="1.32.0"; sha256="02k64pjd1dlz5sksdbkbii9z4ihf1833ws7wwj81w3757zzabx0x"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; + Rsamtools = derive2 { name="Rsamtools"; version="2.14.0"; sha256="0wd4hsn19msz0fkwfq7gvi97vlfpsbzzw3rjj4b6z7s5a83zir2z"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; + Rsubread = derive2 { name="Rsubread"; version="2.12.2"; sha256="1gvd8vmglvzc3bixqxrm4k7yikl2as5l4x6bvvvnwsgx2i7vz7dm"; depends=[Matrix]; }; + Rtpca = derive2 { name="Rtpca"; version="1.8.0"; sha256="0n2k1pqba4fnf0mpkxywd93yzv9dk37c134pna3f25mgzgd84qj3"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; + Rtreemix = derive2 { name="Rtreemix"; version="1.60.0"; sha256="0pkc4xsqqfdvszbb0xwx3hbxl1f7kcx3vm9bhjd7zkwls1jvv2n8"; depends=[Biobase graph Hmisc]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.36.1"; sha256="16lssnmhy3klqp4sw1328f38cixkjh9317gdyikcrmsbcwg2ak6v"; depends=[BiocGenerics]; }; + SAIGEgds = derive2 { name="SAIGEgds"; version="1.12.0"; sha256="1dlkljzm0ji3hkck3w5p69x5ld1pw2yaz3j3v34az1v9xdkzq1j1"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; + SANTA = derive2 { name="SANTA"; version="2.34.0"; sha256="1i99s33id75srjr0x3yfz1gdyxw6766pr9w4afs8varfq8gxyc48"; depends=[igraph Matrix]; }; + SBGNview = derive2 { name="SBGNview"; version="1.12.0"; sha256="0644hd9m4d1s9y000yh831pwyx7q1dzr69fjqf15bby78xkn70yn"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; + SBMLR = derive2 { name="SBMLR"; version="1.94.0"; sha256="1x7p27abv9yc9mxbnprlwh5ph50jkycmlb90qib0mj361g4sr72d"; depends=[deSolve XML]; }; + SC3 = derive2 { name="SC3"; version="1.26.0"; sha256="0f1k27czkccgpgrmlr6bk5ajcbfr99iv9dyjxrmd0l86dm1afab9"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; + SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.40.0"; sha256="1hrfwkn1gd1r2clk09a2i4sqc92bmw1c7h5ddrdnlcpgfdlsdnxp"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; + SCANVIS = derive2 { name="SCANVIS"; version="1.12.0"; sha256="0hs065lsfwjdz8b6kic1gjpak8xd5p08k957f9zsz32shp0gp976"; depends=[IRanges plotrix RCurl rtracklayer]; }; + SCATE = derive2 { name="SCATE"; version="1.8.0"; sha256="1zxliw0q979jps5lrmwks5m39qjd827jbvax1ndkd8p6lp1pcm2h"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; + SCArray = derive2 { name="SCArray"; version="1.6.0"; sha256="0crh2ddh87j5qbxnslr1f94nsf24rzqz61ng6v3g8zpsldkrw09b"; depends=[BiocGenerics DelayedArray DelayedMatrixStats gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SCBN = derive2 { name="SCBN"; version="1.16.0"; sha256="1lan5anf451dmb19sra79d4w2qi9kk7xw3zijswlbhfnd4fv9kgz"; depends=[]; }; + SCFA = derive2 { name="SCFA"; version="1.8.0"; sha256="02g7hzgg68y8ckwhdwlp86574x0ffjp86nwg11whyira80v5y97y"; depends=[BiocParallel cluster clusterCrit coro glmnet igraph Matrix matrixStats psych RhpcBLASctl survival torch]; }; + SCOPE = derive2 { name="SCOPE"; version="1.10.0"; sha256="1z9v27l8bs7gkbgp1kd1q9nyq77x46anc0x0c1as0m04qq7c5xbj"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; + SCnorm = derive2 { name="SCnorm"; version="1.20.0"; sha256="0zv4pf650crwliby34cjv7kxkrbqhc7xvz15n39hz5d0fk7ablgd"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SDAMS = derive2 { name="SDAMS"; version="1.18.0"; sha256="0i9i9w24qb66rbvkpjn2fin8x0mxd7g767i4ly0s75v9kbbp3ca6"; depends=[qvalue SummarizedExperiment trust]; }; + SELEX = derive2 { name="SELEX"; version="1.30.0"; sha256="0b5dcx9djh9d0zi12bnzq81jjzcqam1i59a05d3p917gf0n058ms"; depends=[Biostrings rJava]; }; + SEPIRA = derive2 { name="SEPIRA"; version="1.18.0"; sha256="1vm4zy6a0hff6j6ysbnrxa51irc4mh98rxs2f253f50rwsbasxlv"; depends=[corpcor limma]; }; + SEtools = derive2 { name="SEtools"; version="1.12.0"; sha256="0q47pw3yvk13ld9zwpc6lihf9y4z2dq81y81zyz5b8mxnlkhwixa"; depends=[BiocParallel circlize data_table DESeq2 edgeR Matrix openxlsx pheatmap S4Vectors sechm SummarizedExperiment sva]; }; + SGSeq = derive2 { name="SGSeq"; version="1.32.0"; sha256="03ddz0mpgqqb52r7wa46bcr1ybf40126pg0n0n0pv6fnbq0ifwyc"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; + SIAMCAT = derive2 { name="SIAMCAT"; version="2.2.0"; sha256="1fx355rwaqg057f6qyynmnhqvf74c818irfaii6y3s46g455nvwk"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo lgr LiblineaR lmerTest matrixStats mlr3 mlr3learners mlr3tuning paradox phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; + SICtools = derive2 { name="SICtools"; version="1.28.0"; sha256="1zjwph09shvjzzhsnh8mfzqypj2s66r6irq1bms2zw1mqpjcb2fx"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; + SIM = derive2 { name="SIM"; version="1.68.0"; sha256="0vrz9cmzjy20h02gsi79svrh9ffrxkkzbnfa0azcgycz6h5ywggs"; depends=[globaltest quantreg quantsmooth]; }; + SIMAT = derive2 { name="SIMAT"; version="1.30.0"; sha256="1zwmwblzr9r66a5d9xrjb43id9fl5m4fbzgn04yx9bmvxywa4xfw"; depends=[ggplot2 mzR Rcpp reshape2]; }; + SIMD = derive2 { name="SIMD"; version="1.16.0"; sha256="18wwn76kd826jgqqdrdmsjq5m6mfn3kp3w2h2p5qwb4w5zqdw2ir"; depends=[edgeR methylMnM statmod]; }; + SIMLR = derive2 { name="SIMLR"; version="1.24.0"; sha256="1v5ias6m7p7bww4kslp61nzd6aqcgwwqjb9sxi0arizl5ddwnn0j"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; + SISPA = derive2 { name="SISPA"; version="1.28.0"; sha256="08ks8nlc200yz8r3qr45g03k4bpi4dfvdd7sin1yadazfil1s6kr"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; + SLqPCR = derive2 { name="SLqPCR"; version="1.64.0"; sha256="0s3gs5q5h4vrjaqwdr6gjfsl1pj286sim2cx9abvjj9hpcjk08vx"; depends=[]; }; + SMAD = derive2 { name="SMAD"; version="1.14.1"; sha256="1scmpagh86s9f8qsa89vi8l221asbygpv4mkg7bsv5943aqbknpm"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; + SMAP = derive2 { name="SMAP"; version="1.62.0"; sha256="152lrwn5rr9vlkgj22sgzg0winnhzvvlg6nvzd717bjngjjfj8nq"; depends=[]; }; + SMITE = derive2 { name="SMITE"; version="1.26.0"; sha256="0jkxchbwjjid2r8z1dipjp6rzmj0qs9afrvd4jamvx1gg9xwr6b3"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; + SNAGEE = derive2 { name="SNAGEE"; version="1.38.0"; sha256="1hbcibv4yhk7hw4w41nq85szk41vrfyfv7cv4qzn0xhv3cacivj1"; depends=[SNAGEEdata]; }; + SNPRelate = derive2 { name="SNPRelate"; version="1.32.0"; sha256="00b45rfsandmp6bc458lz7w3vkgc0vsr8wd7xbjq8rnzxpj3bzdj"; depends=[gdsfmt]; }; + SNPediaR = derive2 { name="SNPediaR"; version="1.24.0"; sha256="1afz3d8vbldd5q38nsqwblap4rgxhjqq6yixh5vgk0qbcmhhhb8g"; depends=[jsonlite RCurl]; }; + SNPhood = derive2 { name="SNPhood"; version="1.28.0"; sha256="0kn0ini79lp2c3mav1hf54jg3lw2ggdbi03nrxxp9iinzs83q9d2"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.6.0"; sha256="04lkkhq3im7cyi0ibm8i53092hjlwaz0v32chp487pwdpz87c650"; depends=[Matrix mgcv VGAM]; }; + SPEM = derive2 { name="SPEM"; version="1.38.0"; sha256="1763qcs36vsvbd7rv3s40lgq6yq7b2dcjadgcqmh081hc4zz63cb"; depends=[Biobase Rsolnp]; }; + SPIA = derive2 { name="SPIA"; version="2.50.0"; sha256="1zrjjlji7whpvgpznslswxs6nj29n40x02z0v62j1x7r0y4rkn7b"; depends=[KEGGgraph]; }; + SPIAT = derive2 { name="SPIAT"; version="1.0.2"; sha256="1lajmcg75nypl3ms1dsjxj5fiwi0ncc4405makkczm0gs6d06qch"; depends=[alphahull apcluster ComplexHeatmap dbscan dittoSeq dplyr elsa ggplot2 gridExtra gtools mmand plotly pracma RANN raster reshape2 rlang Rtsne sp SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tibble umap vroom xROI]; }; + SPLINTER = derive2 { name="SPLINTER"; version="1.24.0"; sha256="01rq0x3v5byqwj0mlxv207hkf2zhadyq28qnr49mx25xanb714ah"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; + SPONGE = derive2 { name="SPONGE"; version="1.20.0"; sha256="0wlm7xbnz50avlyx0gpxqbwsascwg777sc39h01a3qxbfz91ia4w"; depends=[Biobase biomaRt caret ComplexHeatmap cvms data_table doRNG dplyr expm foreach ggplot2 ggpubr ggridges glmnet gRbase igraph iterators logging MASS MetBrewer miRBaseConverter ppcor randomForest rlang stringr tidyr tidyverse tnet]; }; + SPOTlight = derive2 { name="SPOTlight"; version="1.2.0"; sha256="03zvbhr1k4zwnzkza99295fp7j1pihjfz8gs1v0kgksj340nwfvf"; depends=[ggplot2 Matrix matrixStats NMF nnls SingleCellExperiment]; }; + SPsimSeq = derive2 { name="SPsimSeq"; version="1.8.0"; sha256="1rhvxqldzv7if8r8x7xnszb68r6qcbysazddbbil0drvi1dxsl0z"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; + SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.12.0"; sha256="06sppcwx5xm1z2dyqfxl9ml3wpyblvcvy0jsc4dqyw5d8np87m5d"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; + SQUADD = derive2 { name="SQUADD"; version="1.48.0"; sha256="174gbzjjvyz0m4ldr0blg82xd7r3av7frzw199ignhflyxy6brsx"; depends=[RColorBrewer]; }; + SRAdb = derive2 { name="SRAdb"; version="1.60.0"; sha256="1j88gk2dr2anh61acvdyqf2gvy3d1dzdssfj1fwpwppy2p0gy0xr"; depends=[GEOquery graph RCurl RSQLite]; }; + STAN = derive2 { name="STAN"; version="2.26.0"; sha256="0lmgplv4fffcq6vp5083hz0y1di7m5zm9dpbkcbm2aq85idyswyr"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; + STATegRa = derive2 { name="STATegRa"; version="1.34.0"; sha256="1l9xzkd1hwiah7bwm23clwc62gs1jks9hgkympwyr5in33fy6z61"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; + STRINGdb = derive2 { name="STRINGdb"; version="2.10.0"; sha256="1md79vx4270wgh07g3m1mypdki1b9d4a558zxplcalwppqh0dsmp"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; + STROMA4 = derive2 { name="STROMA4"; version="1.22.0"; sha256="0cyyjly4wpzjyf130shcpy9q734l32wk3a3c2wymbvxxlphk9353"; depends=[Biobase BiocParallel cluster matrixStats]; }; + STdeconvolve = derive2 { name="STdeconvolve"; version="1.2.0"; sha256="1f5b3vnswpj6sja05g9lnx3lygzkh162kynja0xfjd0rksp4n0h5"; depends=[BiocParallel clue ggplot2 liger Matrix mgcv reshape2 scatterpie slam topicmodels viridis]; }; + SUITOR = derive2 { name="SUITOR"; version="1.0.0"; sha256="0ms36d1ay3w1ynrj6672yhvdv0fsvrlwx6fqrp56f5ibvmh3nchd"; depends=[BiocParallel ggplot2]; }; + SWATH2stats = derive2 { name="SWATH2stats"; version="1.28.0"; sha256="1mab1q9xv0pzm97lpsnvn3hhybqrmy29gcdcdxd4myf6zqg1j0a3"; depends=[biomaRt data_table ggplot2 reshape2]; }; + SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.52.0"; sha256="1sphi1y61abx428624nrk8srlcp405ssqzzxwrpjrd325gj5ry5q"; depends=[]; }; + Scale4C = derive2 { name="Scale4C"; version="1.20.0"; sha256="1fqzfq782xb378p3f8cyd2pd81iwpw5vf9ssq9349vwz1qzycm8a"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; + ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.6.0"; sha256="0lxr6z9zdrgvm06inc1d8gl2agqmbjvgs8f5ryn5x68hqlnchnl1"; depends=[DelayedArray Matrix S4Vectors]; }; + Sconify = derive2 { name="Sconify"; version="1.18.0"; sha256="09jhbvqrwkwp0lg8ixxja9hg88virvpj7bglcmws4z6ch98g42cy"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; + ScreenR = derive2 { name="ScreenR"; version="1.0.0"; sha256="1907v37z3lrqmlghx4kja5pfii1hbifdxka32yqqrnb5zzw4lgxz"; depends=[dplyr edgeR ggplot2 ggvenn limma magrittr patchwork purrr rlang scales stringr tibble tidyr tidyselect]; }; + SemDist = derive2 { name="SemDist"; version="1.32.0"; sha256="1w8jbzz5b9ggc696hbj7vy4n6j2h047raw3x9k6y3vf7b4g83nl6"; depends=[annotate AnnotationDbi GO_db]; }; + SeqArray = derive2 { name="SeqArray"; version="1.38.0"; sha256="12q4n2whcnp011xqlb6hfagk5d6yl24w5i68iz3j7m9cbcxwv6cn"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SeqGSEA = derive2 { name="SeqGSEA"; version="1.38.0"; sha256="1d88glq8k5bv76s3iq39s5vzzzpcg61r5rfbgw7kdcawing485fq"; depends=[Biobase biomaRt DESeq2 doParallel]; }; + SeqGate = derive2 { name="SeqGate"; version="1.8.0"; sha256="0j515d63xmy1p7d7f8cbg0dz5d61vznsfdw8id8cr32jz7ciz1y4"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; + SeqSQC = derive2 { name="SeqSQC"; version="1.20.0"; sha256="12czsf0nphqqrwh5iyragjmms4srjklqdzv3232p39vm5zy5p6c0"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; + SeqVarTools = derive2 { name="SeqVarTools"; version="1.36.0"; sha256="0cy85fzrbd646yc774y0v8qiccjhx7f6ysk399zgdfrkq6r458yd"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; + SharedObject = derive2 { name="SharedObject"; version="1.12.0"; sha256="11rrnm7kjm6z8j4ga88s4cafcdj83pvhnybp7ns5pn7s2ln8044d"; depends=[BH BiocGenerics Rcpp]; }; + ShortRead = derive2 { name="ShortRead"; version="1.56.1"; sha256="1dvnjjc6cwn9wicki3ff3w3zx7i0szj0lnfw4n6lbmipg4ia5bkb"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; + SigCheck = derive2 { name="SigCheck"; version="2.30.0"; sha256="0j8m04csgyz3ph6xp1qd5fzsqh83717366f136vgqr6y4msv6jyj"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; + SigFuge = derive2 { name="SigFuge"; version="1.36.0"; sha256="1bqj490afai01bkkxkc3pph2vix0hjvkixrndks57bwh94r9k876"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; + SigsPack = derive2 { name="SigsPack"; version="1.12.0"; sha256="0bwhpaj1wr67nhljslpvr25yz1y1zxnha2w58g8bmbxxfp8353zc"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; + SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.36.0"; sha256="12383rvcq7l2b3ik2gi741d33shrijj09gqpkbvbksj046j90swm"; depends=[Biobase limma mclust Ringo]; }; + SimBu = derive2 { name="SimBu"; version="1.0.0"; sha256="0hnvhl15jp3kdzijczii8z18533as496f17566kqjz9zrkahlldj"; depends=[basilisk BiocParallel data_table dplyr ggplot2 Matrix phyloseq proxyC RColorBrewer RCurl reticulate sparseMatrixStats SummarizedExperiment tidyr]; }; + SimFFPE = derive2 { name="SimFFPE"; version="1.10.0"; sha256="1mlmlbnqqzxmjmir9lnqnqqb6hmj6wfxhy6wpmf6sv9y2vi2cvjz"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; + SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.20.0"; sha256="1y9c9wf3009w4qh03zpsmc0ff0nkzal673a4nql5c11cn55sza2g"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; + SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.10.0"; sha256="194gnss397wv3pxh1vf8gfikbz519l8hx3w4fm2hxvjs6q8k2234"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran SIMLR stringr]; }; + SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.6.0"; sha256="0dqyx3w8mxhf04xczzdv49lc2jkyamv1vlbdvfj0556y54z45cgg"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; + SingleR = derive2 { name="SingleR"; version="2.0.0"; sha256="05rw6l0d4n9m1dd7dp55zfripx036x1riwy83sx3aj5mw4r1awb6"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; + SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.34.0"; sha256="0xyh4pwwbpa1bmamqdhp84qhjdc2qsxc43xgknjrrja24d06ji2j"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; + SpacePAC = derive2 { name="SpacePAC"; version="1.36.0"; sha256="0pbbqadais7lvkiz1cj1gpx35l28nb5mm53nmkif4jbd9a2p7lh5"; depends=[iPAC]; }; + Spaniel = derive2 { name="Spaniel"; version="1.12.0"; sha256="1sxjdcc31dl7ljbayrykjr0pq6yywxcysiiclziv62msyk9v4hfx"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; + SparseSignatures = derive2 { name="SparseSignatures"; version="2.8.0"; sha256="05zsmm8s23wms8arf2hrjx8vzklkq5py9wbqvvnp7989kb2r0bfn"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; + SpatialCPie = derive2 { name="SpatialCPie"; version="1.14.0"; sha256="07pl9wnn5b1ia71npvcfbm8virydj3fjrpr33gmk081yzvkqr52q"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; + SpatialDecon = derive2 { name="SpatialDecon"; version="1.8.0"; sha256="0an0wkblfv5bzsvlq7bz01hcc1vaj16l28yk621jpyb4bjva795z"; depends=[Biobase GeomxTools logNormReg Matrix repmis SeuratObject]; }; + SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.8.0"; sha256="1cjrgcn4cbflbfllrfjvn0nzz9xvyflr2pd8zjqgdqxyj7rxpng7"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SpatialFeatureExperiment = derive2 { name="SpatialFeatureExperiment"; version="1.0.2"; sha256="0jd4d1djrcqydyy182zd28fffvzkph4krlsk7sk1avk1nj5x2jg2"; depends=[BiocGenerics BiocParallel rjson S4Vectors sf SingleCellExperiment SpatialExperiment spdep SummarizedExperiment]; }; + SpeCond = derive2 { name="SpeCond"; version="1.52.0"; sha256="09f5nz799ai7y4ig6y24xnldd37qvv7yd1k258z3s9ckc76cdgd4"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; + Spectra = derive2 { name="Spectra"; version="1.8.1"; sha256="13vm0szpsac29sys1wmqi9mjxgmascn00vr01wdlg22789hvnzkd"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; + SpectralTAD = derive2 { name="SpectralTAD"; version="1.14.0"; sha256="1sfbbwl9i0615rapmlycr2c41vlw5yvip1qkkwjq3hmyvj4bs0rd"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; + SpidermiR = derive2 { name="SpidermiR"; version="1.28.0"; sha256="13dbz24g7l25d26piq00cpyll4cf8ss5l1kih7nvp8lrb540h6df"; depends=[AnnotationDbi gdata httr igraph miRNAtap miRNAtap_db org_Hs_eg_db]; }; + SpliceWiz = derive2 { name="SpliceWiz"; version="1.0.1"; sha256="0sncnp8csvz1vg5b74mqfsf3bmscqjzk1nzd66pz4vf5dm1px3qj"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats DT fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array heatmaply IRanges magrittr matrixStats NxtIRFdata ompBAM pheatmap plotly progress R_utils RColorBrewer Rcpp RcppProgress rhandsontable rhdf5 rtracklayer S4Vectors shiny shinydashboard shinyFiles shinyWidgets SummarizedExperiment XML zlibbioc]; }; + SplicingFactory = derive2 { name="SplicingFactory"; version="1.6.0"; sha256="1l92i96n7pgwrrl4ywwmbpl1al5x3lamn9wrplclkh0l8yx8c033"; depends=[SummarizedExperiment]; }; + SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.38.0"; sha256="0bqgn2lcmf6n188mj70cczwaps97dghmsililviq9sll91dj1gn8"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; + SpotClean = derive2 { name="SpotClean"; version="1.0.1"; sha256="1sxmj1zgx7xf3f29l9qws4sf9k6v1wwh94brawqd6qq1plv79g51"; depends=[dplyr ggplot2 Matrix RColorBrewer readbitmap rhdf5 rjson rlang S4Vectors Seurat SpatialExperiment SummarizedExperiment tibble viridis]; }; + StarBioTrek = derive2 { name="StarBioTrek"; version="1.24.0"; sha256="02j6l2dmygwmsg1kyb3wpd9qsph5a9wim6gzaljzfa3y2gcv7sx3"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; + Statial = derive2 { name="Statial"; version="1.0.1"; sha256="1d9crknbxrdpdvmjkm0y2im3har486dlgy5k40njiff7wcm9g4ms"; depends=[BiocParallel concaveman data_table dplyr ggplot2 SingleCellExperiment spatstat_explore spatstat_geom stringr tibble tidyr tidyselect tidyverse]; }; + Streamer = derive2 { name="Streamer"; version="1.44.0"; sha256="14wr5q5dkc5b8hb1zkh03hk7bx51hicshwjvwvy01yxfyi1jkszq"; depends=[BiocGenerics graph RBGL]; }; + Structstrings = derive2 { name="Structstrings"; version="1.14.0"; sha256="0sw8jv3qhfr0r13dpyhml3xrmvf35cnqai20mk123iq160zjq74s"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; + StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.13.0"; sha256="11z3acsbaifrxkghd7i8503ki9s1lc6c22880yna6qcfprlzb44g"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.14.0"; sha256="192yj32aj012ww5yz3v5x4xplrkr5k8zp9yvmfq86hzn4jwcpdxx"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; + SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.16.0"; sha256="1q63aqxrk3s944kld2ji0ghng7yyy8a2d4bwar3wpp1plhkiirrq"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; + SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.28.0"; sha256="0897v6x1ki4m7kajnd60yv5qj6xa1293sj572b4dhcnfjvsf9rcn"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors]; }; + Summix = derive2 { name="Summix"; version="2.4.0"; sha256="0da94002spi4hv6a42aahdcazq66lf2nf4r6l2zg3hqxw0v6kph9"; depends=[nloptr]; }; + SwathXtend = derive2 { name="SwathXtend"; version="2.20.0"; sha256="0bki0cl034zlccqg59dmvr9g57fz6qm57kr28arsl2w1bwjmng8d"; depends=[e1071 lattice openxlsx VennDiagram]; }; + SynExtend = derive2 { name="SynExtend"; version="1.10.2"; sha256="1cbbhyqyhwdzcsphaqirm2mas8yb6mgs2pmm1x2krfypq200sji1"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; + SynMut = derive2 { name="SynMut"; version="1.14.0"; sha256="0dq5cy79pdi4ibkyvac315f14xxwahpyznpgzjybksr8xqsa5lsc"; depends=[BiocGenerics Biostrings seqinr stringr]; }; + TADCompare = derive2 { name="TADCompare"; version="1.8.0"; sha256="197cbbi7wnw0j6i8fvl051zhmjl9cgiy45pq7fcjc48vnrv5vw6y"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; + TAPseq = derive2 { name="TAPseq"; version="1.10.0"; sha256="0ilpziqzbk4qlka4dmvbkv8dr3w86hpsxm0nlakkps895z8x59sz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; + TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.10.0"; sha256="0v4xi6hbzw2x0ipg49xn41fdn6mksfnmsikg9nqvq28m55hkxxmc"; depends=[ASSIGN BiocGenerics BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; + TCC = derive2 { name="TCC"; version="1.38.0"; sha256="17kkn8xfkf7g8y51nnzsrgn8v65qlh8a4jysn03phk7pnfrmj7jl"; depends=[baySeq DESeq2 edgeR ROC]; }; + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.25.3"; sha256="0daq7093yipry8pp6fj6pj8x1njxs8j6cz7875qkfmzqkbis4vql"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; + TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.23.0"; sha256="16757szccczlv1q35y1cnmlkr12s46f63z7ijffpb15q85xlaqdx"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; + TCGAutils = derive2 { name="TCGAutils"; version="1.18.0"; sha256="0vhpamn5ak3b7dr3f4a4z6f7xfsprryjw8nax4f4p3flifim9kmx"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; + TCseq = derive2 { name="TCseq"; version="1.22.0"; sha256="07zk4c8d9jf8d8f71jbd57c4dhi8g23avwhr2smzi7xqhy12zfp5"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; + TDARACNE = derive2 { name="TDARACNE"; version="1.47.0"; sha256="19zf7x2wcfnij1nlh623kim63d6wb3p42mwsn35msds778jvcbxq"; depends=[Biobase Rgraphviz]; }; + TEKRABber = derive2 { name="TEKRABber"; version="1.2.0"; sha256="139lblpf5vcpr2mni4x2l5ba4dcixnzbvav8cb90586myrwxkxf3"; depends=[apeglm biomaRt DESeq2 Rcpp SCBN SummarizedExperiment]; }; + TENxIO = derive2 { name="TENxIO"; version="1.0.0"; sha256="0qva89qpb8zhshq0b77js1m3hc81jpk53yi6vygwfmassg0s7wyz"; depends=[BiocBaseUtils BiocGenerics BiocIO GenomeInfoDb GenomicRanges Matrix MatrixGenerics R_utils RCurl readr S4Vectors SingleCellExperiment SummarizedExperiment]; }; + TEQC = derive2 { name="TEQC"; version="4.20.0"; sha256="124y6kmwk1cx3k5rjr36lx1ii6fr5xllxniggd59a8k5gdrfizg2"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; + TFARM = derive2 { name="TFARM"; version="1.20.0"; sha256="189h3cc113ikk7ixwrww7ahd20l4dnsnppylphkmxp2p1zhg8ny8"; depends=[arules fields GenomicRanges gplots stringr]; }; + TFBSTools = derive2 { name="TFBSTools"; version="1.36.0"; sha256="05kgkwmh5mcrm0xd81rzicysgknb8wrf71y2llikvma1b9c1g789"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; + TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.18.0"; sha256="0ylcr59zxyka3yngf419gzc6jqcg5yrvwsaclvaiz8fcnw0rymmv"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; + TFHAZ = derive2 { name="TFHAZ"; version="1.20.0"; sha256="16b3m09kn6kq8fhl873dg4h00mdnazk7kz5aipqn6nl3n5pxdpb7"; depends=[GenomicRanges IRanges ORFik S4Vectors]; }; + TFutils = derive2 { name="TFutils"; version="1.18.0"; sha256="1spfa75rxfkss8fipyq9bfdm3p71y2kabwcgjpq97q1b5wnfqazd"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; + TIN = derive2 { name="TIN"; version="1.30.0"; sha256="01cpi05y1x9d0i97w1bifi43spa9rkblqpvdx8vvbkzhxbmzkhi8"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; + TMixClust = derive2 { name="TMixClust"; version="1.20.0"; sha256="1l06mlz9fsxn552b28japiw4h5h4wjf4jcrqbpcisbrxnnp6480i"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; + TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.14.0"; sha256="0i17bikrsh408n75msli2h291iypi2higr4gr1lf76rg98lf5l4i"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; + TOAST = derive2 { name="TOAST"; version="1.12.0"; sha256="1v9nsbgwp5476ddn3irqiq4cxnpqs49w70l3qbhkm5ydg2ym3cvs"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; + TPP = derive2 { name="TPP"; version="3.26.0"; sha256="1vgvsf94rqabh6bpl73ml10ka91ky4xd0fk7l74vkxrshv02qk6f"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; + TPP2D = derive2 { name="TPP2D"; version="1.14.0"; sha256="1hba901gfm1saqyh8yf18nn4r5s6i1bpxsync0hcsy46lwx7gbwg"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; + TREG = derive2 { name="TREG"; version="1.2.0"; sha256="1skk9hqc5kyhj2jfy0lwywc3lwf6d15mfz05j57bx9z27gjkbkj4"; depends=[Matrix purrr rafalib SummarizedExperiment]; }; + TRESS = derive2 { name="TRESS"; version="1.4.0"; sha256="0ybyjkcj4xpha5c0afyx7ps13kdl45v9mbgpb75j15f76dw64162"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; + TRONCO = derive2 { name="TRONCO"; version="2.30.0"; sha256="0xr3vbs239zs5fgdkka4a51vf3q35w7h811qlix9kg549vabi5ir"; depends=[bnlearn circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; + TSCAN = derive2 { name="TSCAN"; version="1.36.0"; sha256="0aqn1rxzbil9m9mpcdfc0k75s5k6ljy0k4bjrn0zq3492zz4x1qi"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + TTMap = derive2 { name="TTMap"; version="1.20.0"; sha256="1vfj2zq4k4fzjnq48pckxkl3bwxwghhfwq8cz14hhwf10f735pq7"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; + TVTB = derive2 { name="TVTB"; version="1.24.0"; sha256="16lhbbisgxmvp86qfkp0cdd8akjld0ryklw41hi3k4ndimzax6hf"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; + TarSeqQC = derive2 { name="TarSeqQC"; version="1.27.0"; sha256="0iiv7c3jd1iw7i5nn65370zbvi11s9qn72zig9rw1gz8nvnmdgpq"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; + TargetDecoy = derive2 { name="TargetDecoy"; version="1.4.0"; sha256="1xx9y5faf5ic14h7cnxpb83nr34mqzz0c846g1z28f3x9d0kg9kz"; depends=[ggplot2 ggpubr miniUI mzID mzR shiny]; }; + TargetScore = derive2 { name="TargetScore"; version="1.36.0"; sha256="00z2zv5yhxriagvcz3bwkpr9ii0r9lw4vcf7kjp7x5pjzcc6q6wq"; depends=[Matrix pracma]; }; + TargetSearch = derive2 { name="TargetSearch"; version="2.0.0"; sha256="1m5v2d67w0hi3x1b6nlsq97z197djnr23d6lj9krib1im70cclwy"; depends=[assertthat ncdf4]; }; + TileDBArray = derive2 { name="TileDBArray"; version="1.8.0"; sha256="0xmf28h7bsbdr6kds7a99y1y2j52wppxsd1zrhbsipssdhxyir15"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; + TimiRGeN = derive2 { name="TimiRGeN"; version="1.8.0"; sha256="1jy700y81jjh03y7j66c2m150wl5l31mfd4xpm5jffq4361pwnjj"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; + TissueEnrich = derive2 { name="TissueEnrich"; version="1.18.0"; sha256="0mkxkmc7pmyqs7nayhhxqpi3a7vwydadzzb6gizliv0w9ic3fznv"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; + TitanCNA = derive2 { name="TitanCNA"; version="1.36.0"; sha256="135l414wk4mh3hbb17djh8pw5lvhl9yf28azc6g95djrahyhgi2g"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; + TnT = derive2 { name="TnT"; version="1.20.0"; sha256="0mn6n5cbpivf1d8n5ili4fnc663xkn90g3jbhdzk1pgi8lkk40fl"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; + ToxicoGx = derive2 { name="ToxicoGx"; version="2.2.0"; sha256="0bi7hf05a2nyd1yqz7sl961s7b5v4lx1p68xiyk91qnxm3ipcxn0"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; + TraRe = derive2 { name="TraRe"; version="1.5.0"; sha256="06w5rk2wjam5dhiya9n6kjbjahw4i46cb05zvakcy0f8gwrvb9ic"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment]; }; + TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.6.0"; sha256="02di1ijfv4rfjc1qn6zkg3bkxdc1y96dkbzhl8b4qzj23wzjy9x9"; depends=[ggplot2 pracma rgl]; }; + TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.6.0"; sha256="130w4vpsmrkg458n3wbhvlchg171gjqybvs2w14bxa608f3fzw03"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; + TransView = derive2 { name="TransView"; version="1.42.0"; sha256="0447jwij6bamx91gm92mjf5xc3pb4jlzsqnyragwr8wy9a3k5w2d"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; + Travel = derive2 { name="Travel"; version="1.6.0"; sha256="074v9hl4gzy8081mlas3mjaplchjrmk2bl4f5nkdjclh46xf3wgg"; depends=[Rcpp]; }; + TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.10.0"; sha256="0ykcngj7mf1hs6i801ivzncsd99qhmcwm9s3yr8j3qsy2d1nzki6"; depends=[ape igraph RedeR]; }; + TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.6.0"; sha256="136zgpn1l059i64gj6iappr6nz42z4wbxlg3zpc5npwkqrz3val2"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; + Trendy = derive2 { name="Trendy"; version="1.20.0"; sha256="0wn0alaqrcakz1rycyvr6ya7cvx28an9haa1azcfcr17ajlhdy2b"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; + TurboNorm = derive2 { name="TurboNorm"; version="1.46.0"; sha256="1dr1nvajgk5y695y2zjzaz57qxcb24zbcv82k953hha6hzmbknyq"; depends=[affy convert lattice limma marray]; }; + TypeInfo = derive2 { name="TypeInfo"; version="1.64.0"; sha256="0f5jm3pgrq3qawd42295n5x6qm5j2kl4xgj2l7jxwy6pd1hlnwmw"; depends=[]; }; + UCell = derive2 { name="UCell"; version="2.2.0"; sha256="1g7lgpcl9p0369q9mlvpax44fk3522y6ks2k112sk057fwnjpjp3"; depends=[BiocNeighbors BiocParallel data_table Matrix SingleCellExperiment SummarizedExperiment]; }; + UMI4Cats = derive2 { name="UMI4Cats"; version="1.8.0"; sha256="19ixkpr20n5gzml3yj4vrxzbvfzwc9n14a5w9zi39hxy6f0fcyp8"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; + UNDO = derive2 { name="UNDO"; version="1.40.0"; sha256="0yjxa0dv4j369m4hrvx163x0c9f8y68fnsq3zab9k8idfxbim500"; depends=[Biobase BiocGenerics boot MASS nnls]; }; + Ularcirc = derive2 { name="Ularcirc"; version="1.16.0"; sha256="1z10y0ix10fb4v3yf11vgh9zwbqnczrb7s0jsdn8jpkjq5nijrdy"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr plotgardener R_utils S4Vectors shiny shinydashboard shinyFiles shinyjs yaml]; }; + UniProt_ws = derive2 { name="UniProt.ws"; version="2.38.0"; sha256="0qhww6sjjdrxbjn2gx886dnk4qr8d20a8gnvcqfg4i5i232icz1f"; depends=[AnnotationDbi BiocBaseUtils BiocFileCache BiocGenerics httpcache httr jsonlite progress rjsoncons RSQLite]; }; + Uniquorn = derive2 { name="Uniquorn"; version="2.18.0"; sha256="1b9cfyxszdxc7ja6g3nyn7dg4zk45mhn6l9jglhwcl6v1xnc8jay"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; + VAExprs = derive2 { name="VAExprs"; version="1.4.0"; sha256="10scvyn6m0aaygg0xy7j5978kfi3rm1yjdmas7b3l1cx58356s9k"; depends=[CatEncoders DeepPINCS DiagrammeR keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; + VCFArray = derive2 { name="VCFArray"; version="1.14.0"; sha256="1zcd7lx9vypym4svpg47lgnmrczgrswzpr5dwcfm6h7c3jwnbnhs"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + VDJdive = derive2 { name="VDJdive"; version="1.0.0"; sha256="0qc95d6b3gy4rh90xp1iib88yjhr9v3jgja805an3rqr3c6r7a0m"; depends=[basilisk BiocParallel cowplot ggplot2 gridExtra IRanges Matrix RColorBrewer reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; + VERSO = derive2 { name="VERSO"; version="1.8.0"; sha256="1535si34m13w7z2k6ys2xvj73kdwik618iy8swvb44z73vg2xkp8"; depends=[ape Rfast]; }; + VaSP = derive2 { name="VaSP"; version="1.10.0"; sha256="1zvva74lwhng0j4k1kya6q07xgrav2f9pzxsdzgm1rrmnqcihdyb"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; }; + VanillaICE = derive2 { name="VanillaICE"; version="1.60.0"; sha256="148xbymfn3za74z5ml4csj6q875r7hk3iafgcifc797gnw203sl8"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; + VarCon = derive2 { name="VarCon"; version="1.6.0"; sha256="0y0arfjx5v6b4fc26xyv8ycvy5a2k77dkxgn7if7svjwkk39sgwk"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.44.0"; sha256="08rm27jcx6amawqdh59291r0qzkr5cdhbhm0xbjbd5mvdpp1icl8"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; + VariantExperiment = derive2 { name="VariantExperiment"; version="1.12.0"; sha256="129a0ya2jq600r0dfx3n70kqchh9a8d23xvc1ym2zlm407hi0bnj"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SeqVarTools SNPRelate SummarizedExperiment]; }; + VariantFiltering = derive2 { name="VariantFiltering"; version="1.34.0"; sha256="110db9gcla796mbll3pin0hv2qp8r6khx0zzqfgzkp4mcyjxi62y"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; + VariantTools = derive2 { name="VariantTools"; version="1.40.0"; sha256="181igcmlyx3ddmhml9wqcgw6ffdrqpmg4imd6ipf68c90agdgaz0"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + VegaMC = derive2 { name="VegaMC"; version="3.36.0"; sha256="07lpzzkwx9g2gcyqg33xxshwylmyzgbf2p63ck3kkyqv64ylkhw0"; depends=[Biobase biomaRt]; }; + VennDetail = derive2 { name="VennDetail"; version="1.14.0"; sha256="0976zqbp3xgxlq0b28r0z7shhmn7nrphhxqv8j3wdk3xxbgy4mzg"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; + ViSEAGO = derive2 { name="ViSEAGO"; version="1.12.0"; sha256="0y177yjw9bnsnfqnylwv8zhk7fyspx9qv94yw7jmfhxsh7azpafk"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; + Voyager = derive2 { name="Voyager"; version="1.0.6"; sha256="09kq47b7n1sqpsiypp2iiq9agq2b9n8w160245pq4pqlp5xix5dy"; depends=[BiocParallel bluster ggnewscale ggplot2 Matrix patchwork rlang S4Vectors scales scico sf SingleCellExperiment SpatialExperiment SpatialFeatureExperiment spdep SummarizedExperiment]; }; + VplotR = derive2 { name="VplotR"; version="1.8.0"; sha256="0v9qbz9vg3cd7jjb0bhl2qp8dbwi4f98l4wmppzkz3il624w8ny5"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; + Wrench = derive2 { name="Wrench"; version="1.16.0"; sha256="0n7mvj9jdp8w5w64i49kkqzbrvpv2vzx6y6fb7g2sqp24wqrn39x"; depends=[limma locfit matrixStats]; }; + XDE = derive2 { name="XDE"; version="2.44.0"; sha256="1djsr92zyh4739ra8v36nylxr3z7rx9lll25mm06vc3l77jxlfzp"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; + XINA = derive2 { name="XINA"; version="1.16.0"; sha256="1c97lsb5shixh4n4mi9kh4gz4qnia9vq736rnzxbs03n5bvlmwlq"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; + XNAString = derive2 { name="XNAString"; version="1.6.0"; sha256="05bs972b132mccf7k0v6rmacbck0ydi5x06fgzs05m48ykkbx988"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; + XVector = derive2 { name="XVector"; version="0.38.0"; sha256="0ygdyh3s4qsaay930a5lbnmgh6a4gqp5ck9ww466yk0jyk1hxfp9"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; + Xeva = derive2 { name="Xeva"; version="1.14.0"; sha256="1qy3hj0dijb859q7a2ygb6il4mn2m3f9chy8lkj6lkq64xlayjxg"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; + YAPSA = derive2 { name="YAPSA"; version="1.24.0"; sha256="17yxzqvyaa423k0rskahlgqxcsi70flgsxniry3f4m8yvmghxxkz"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; }; + a4 = derive2 { name="a4"; version="1.46.0"; sha256="1sis4hwrxyn2x96yysz82gffl2kkj68ry945y15zwikwk80s31hb"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; + a4Base = derive2 { name="a4Base"; version="1.46.0"; sha256="14diri7gswd6h5p3bdhh20fy7i54d270mq985qcdvdyhx4kpw6g6"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; + a4Classif = derive2 { name="a4Classif"; version="1.46.0"; sha256="0lirj0qzzrm996g8yh30x61cg1qkh436qd8xzgv3y3y3n5jj5d3w"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; + a4Core = derive2 { name="a4Core"; version="1.46.0"; sha256="0plgfzsvg220v6k6p0g7izsfw2lj78331lqyvz0p9vd91ynwp41k"; depends=[Biobase glmnet]; }; + a4Preproc = derive2 { name="a4Preproc"; version="1.46.0"; sha256="00xs1vayl8v6in79iv7lwbn52yyyq4lv6k3k727g7il8x17mi8i0"; depends=[Biobase BiocGenerics]; }; + a4Reporting = derive2 { name="a4Reporting"; version="1.46.0"; sha256="09q8ng5kp47bqpj7m2y2112fkjxcnhzxk9v80hqksm8h1df46riv"; depends=[xtable]; }; + aCGH = derive2 { name="aCGH"; version="1.76.0"; sha256="05q303bf8acvhbdzqxqk2gf12vg0fdqknlxryn2cs8nijx40zp46"; depends=[Biobase cluster multtest survival]; }; + abseqR = derive2 { name="abseqR"; version="1.16.0"; sha256="1z5an4vsm55a0qr46qmp8562vc3xdam5f3840r8hcdnn5dvzw414"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; + acde = derive2 { name="acde"; version="1.28.0"; sha256="1d47hbna68qm517afk1wb0w9gb8j52p7nqh5axcc6h76zppsc1sp"; depends=[boot]; }; + adSplit = derive2 { name="adSplit"; version="1.68.0"; sha256="0a05j1g42wnw5lcn6g6vp2z3mnjz185b2hvdg362ln270r19gch6"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; + adductomicsR = derive2 { name="adductomicsR"; version="1.14.0"; sha256="0h180k4r1lrij1smpibbqgiki1hb2q87n5ay6habig4bxzbx773x"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; + affxparser = derive2 { name="affxparser"; version="1.70.0"; sha256="0p42rpyh96aph9jr8kiyjvv860jn7m7ji2nrib2vr2nl0jyaxqjs"; depends=[]; }; + affy = derive2 { name="affy"; version="1.76.0"; sha256="1iix9mq4aph6avs2qr64a7hip461cif56k6npvs5g69nj3rn50gj"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; + affyContam = derive2 { name="affyContam"; version="1.56.0"; sha256="0phf9rvxr45zq9m5rcjsiixmj9ilz518l628l8cd1hzfdk240ffy"; depends=[affy affydata Biobase]; }; + affyILM = derive2 { name="affyILM"; version="1.50.0"; sha256="0i2hjaqjz06ym5kbw5da1h3cahc630mjwljsji1l2ks0gjcipll0"; depends=[affxparser affy Biobase gcrma]; }; + affyPLM = derive2 { name="affyPLM"; version="1.74.0"; sha256="1dvkjj0fm3wlkvm8w7cmhdhchpm3sai305gpihrnhxdvr57lv27a"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; + affycomp = derive2 { name="affycomp"; version="1.74.0"; sha256="18bxnjcl7cbgwm3yf58608ghwnpci94xgil11zmbpgzgrpv9pkrs"; depends=[Biobase]; }; + affycoretools = derive2 { name="affycoretools"; version="1.70.0"; sha256="17slls8dihjnpm6bynic8cm2fbnfl5iqwimz0wz7c9x44d1bxi4l"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; + affyio = derive2 { name="affyio"; version="1.68.0"; sha256="1bdcz9sz4khs7p4ddryc4ir0fwcjrkwqka8y0c9n36ykiv4myfib"; depends=[zlibbioc]; }; + affylmGUI = derive2 { name="affylmGUI"; version="1.72.0"; sha256="0jds73pxqf522wcg8qd4b4k1qbhn51av5md1nhgcdnb6is0lzvxi"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; + aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.8.0"; sha256="1snsc2430cc7cd0k01n1rwa6vympd79g1mcch0paxxkq7msvfn42"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; + agilp = derive2 { name="agilp"; version="3.30.0"; sha256="15cw004g1vxfwvf939018vmlv9gym4r473jissamkygqdv78hcr0"; depends=[]; }; + airpart = derive2 { name="airpart"; version="1.6.0"; sha256="07zxv0sjhlajaw4gxpjni14qyyqn70ar8ph5cpibzcky1lx6pmkl"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; + alevinQC = derive2 { name="alevinQC"; version="1.14.0"; sha256="0rd64j4hkdk2d6mlld6qkv2m96lqc93807xjdf05xm8qkyx8g8y2"; depends=[cowplot dplyr DT GGally ggplot2 Rcpp rjson rlang rmarkdown shiny shinydashboard tximport]; }; + alpine = derive2 { name="alpine"; version="1.24.0"; sha256="0rjnwljh4c2f7ml0m14pllns4pvyjwwf23qsn6zjygm5x04bapf0"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; + altcdfenvs = derive2 { name="altcdfenvs"; version="2.60.0"; sha256="0fm4l93j6nm1w1w57zzryc1hkzapp8l16pkwjzdzllvwvsnsg8r0"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; + amplican = derive2 { name="amplican"; version="1.20.0"; sha256="1c990i6gxbarcpbdpkz017x94spwzap95l95synlizbkyif4z8ij"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; + animalcules = derive2 { name="animalcules"; version="1.14.0"; sha256="1alpsamrglgvzhcibkaf7m3gyiv61wbj1gvsq4lw6vjka100j9qr"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; + annaffy = derive2 { name="annaffy"; version="1.70.0"; sha256="0qxihlhx7ijspvgzdp8zxzrc44y9pwkygvsllh4v47p85ham49fg"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; + annmap = derive2 { name="annmap"; version="1.40.0"; sha256="18ia189qgsbcivpfsfss05dnd3kdc6gmswq8i1whwf9n227b2cv3"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; + annotate = derive2 { name="annotate"; version="1.76.0"; sha256="06jmnv36y3n6pl1vs6mp14sgyzl4l37g13diaa49k7qwp1kdpl3a"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; + annotationTools = derive2 { name="annotationTools"; version="1.72.0"; sha256="1z5vgblhi1kj2n9d4kbqgvwnm48372q0szgjshch8g39dypijvhd"; depends=[Biobase]; }; + annotatr = derive2 { name="annotatr"; version="1.24.0"; sha256="08f3xikgb0z1j7n8i04yn1dlfj8rxc76nmf5b7i5ljcp0jqiv07n"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; + anota = derive2 { name="anota"; version="1.46.0"; sha256="1a9xgcp48zjql6an3kiv8li4saw10k1dl7qzyyw84xvx856ilv97"; depends=[multtest qvalue]; }; + anota2seq = derive2 { name="anota2seq"; version="1.20.0"; sha256="14ggggfa6mdqcb2hfvann9mb66s7a9nxlnh31zblb3mrrjizg1x3"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; + antiProfiles = derive2 { name="antiProfiles"; version="1.38.0"; sha256="0f32373ncfjbvy05yngmfhhdgyc99a4idz3ry2xlabdmrbs5yac3"; depends=[locfit matrixStats]; }; + apComplex = derive2 { name="apComplex"; version="2.64.0"; sha256="0ycchrdhx7zh62f0p0gxm7g58m2w3c2lfkaasrwydspd3jx0rsna"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; + apeglm = derive2 { name="apeglm"; version="1.20.0"; sha256="1hk2y7r734wdd56f18l03kyq9p35kv653a5f7z2cjkq37gvcqrd1"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; + appreci8R = derive2 { name="appreci8R"; version="1.16.0"; sha256="1ssldnz4k21i4zpa6r9ja9wvzdlgbrr53pmivwjj7kbvy02906p7"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; + aroma_light = derive2 { name="aroma.light"; version="3.28.0"; sha256="01g9vfkmpfkn9nv71jyybq93lid6x93jbadjahngy98w67n3sin4"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; + arrayMvout = derive2 { name="arrayMvout"; version="1.56.0"; sha256="0g66s64n4qlvhkanp33bbvpi93rsdx5xq0mjr96d0195qbf6k156"; depends=[affy affyContam Biobase lumi mdqc parody]; }; + arrayQuality = derive2 { name="arrayQuality"; version="1.76.0"; sha256="0b5q71bpl9ln26622jvchd4f9i4kwayqkm9b75yj0a69imbfcn4s"; depends=[gridBase hexbin limma marray RColorBrewer]; }; + arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.54.0"; sha256="0jz9b3f8x1aal4sskq1a09jpavhm8alggwbj3ka42fb89xymrz33"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; + artMS = derive2 { name="artMS"; version="1.16.0"; sha256="17pb8ba2p8kk72b1p9x46h7xw3z2js5612388d4lsm4gl2flczyd"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; + atSNP = derive2 { name="atSNP"; version="1.14.0"; sha256="12za1agpbjjg4i94mikbkdbwqnkzzwz07v0gwdc7lpa9899q2ycb"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; + atena = derive2 { name="atena"; version="1.4.0"; sha256="1a3qv66caz2pg67ff9c5424pygsgqnfx67ybzc3zkzaw4fj8cp54"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix matrixStats Rsamtools S4Vectors scales sparseMatrixStats SQUAREM SummarizedExperiment]; }; + attract = derive2 { name="attract"; version="1.50.0"; sha256="0r5vykjqq33gchqv0wp2i6wpnk95cv26w5j4yqxcnw0bnqfhrgkm"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; + autonomics = derive2 { name="autonomics"; version="1.6.0"; sha256="1nbfp2p33ana2dpadf5m7s1xl1z0ccxhxkrmd5ya5n44rvk1drrq"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; + awst = derive2 { name="awst"; version="1.6.0"; sha256="0dvzkqpjv7whns9q8zj6n2nyvnaw2ib7i53vf049n94x52vh9x15"; depends=[SummarizedExperiment]; }; + bacon = derive2 { name="bacon"; version="1.26.0"; sha256="1v5kvvbc5fwvs84d2aq6gq6f6z0l68n7626gcnc8mh3sc27lxz53"; depends=[BiocParallel ellipse ggplot2]; }; + ballgown = derive2 { name="ballgown"; version="2.30.0"; sha256="0iy24vj4lg1k4fzdxf9blc47xsp4dmplajgabsb2s925l7jpxfvw"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; + bambu = derive2 { name="bambu"; version="3.0.4"; sha256="174ww8fz8hzybc005w6jbxx4dzgn3samwwfmgl6ais4vyvp9hkf1"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; + bamsignals = derive2 { name="bamsignals"; version="1.30.0"; sha256="059pkm5pg9ssd0l8xrm13d0hscqnmlqcb4qb5p4fbzgx6088zg05"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; + bandle = derive2 { name="bandle"; version="1.2.0"; sha256="0xam7d7d43k5n4k855if0j21z4vk5igm0vldg31jh4pm3h4j7i1n"; depends=[BH Biobase BiocParallel BiocStyle circlize dplyr ggalluvial ggplot2 ggrepel knitr lbfgs MSnbase plyr pRoloc pRolocdata Rcpp RcppArmadillo rlang robustbase S4Vectors tidyr]; }; + banocc = derive2 { name="banocc"; version="1.22.0"; sha256="0d7ss3df6zcfsh8kgy35ghxa6f27ynjhdbi6mdypgk9q24f64r78"; depends=[coda mvtnorm rstan stringr]; }; + barcodetrackR = derive2 { name="barcodetrackR"; version="1.6.0"; sha256="1b3z83nkl8csxs88rcbmkkfjps71mwnylvpy3kjzyi02xw0kh0c1"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; + basecallQC = derive2 { name="basecallQC"; version="1.22.0"; sha256="0zaqgijazcii983agdhav2kn64kpdlmnmw54ipdgcbza6ky26hvh"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; + basilisk = derive2 { name="basilisk"; version="1.10.2"; sha256="14sgm3ia7jj5jckysqkljrffafg6rl8i7fgzsxv8ycnrwbd05d09"; depends=[basilisk_utils dir_expiry reticulate]; }; + basilisk_utils = derive2 { name="basilisk.utils"; version="1.10.0"; sha256="0gh29w8arg0glawprwshaixv07y756c4lx21h8jjbqlsrbspp8fw"; depends=[dir_expiry]; }; + batchelor = derive2 { name="batchelor"; version="1.14.0"; sha256="1cdpq8zfn718qmsqjp79siddh3kzag4a90p276v261xbjvrxavjv"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; + bayNorm = derive2 { name="bayNorm"; version="1.16.0"; sha256="02kkp7c7d57pj51vs7sxi7gpjip7dspd72m4hpvjs5s7bjfxi0f3"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; + baySeq = derive2 { name="baySeq"; version="2.31.0"; sha256="0lq2wfm3ibrpha9mqhhp6dgsx4jm2kwxvvrj0b62dzqspvg743wh"; depends=[abind edgeR GenomicRanges]; }; + bcSeq = derive2 { name="bcSeq"; version="1.20.0"; sha256="1dynr37kqs0p0as3psa7bw3lxnqwy7aj58mxk8xjsfm8xf7v4733"; depends=[Biostrings Matrix Rcpp]; }; + beachmat = derive2 { name="beachmat"; version="2.14.0"; sha256="0sa1wh997jfiz2y0dr7v12b7pvlf7icgv6arlyqy57winbnqa96m"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; }; + beadarray = derive2 { name="beadarray"; version="2.48.0"; sha256="0fr24gj6h2rr1r4l3n8myjaihjqi5yinwdsxqa5ih8m3v72dlrby"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; + beadarraySNP = derive2 { name="beadarraySNP"; version="1.64.0"; sha256="06hy89pclbyxjw5yf5i9bc3wr789b9pmhd9sdchgljlijs9vcj6g"; depends=[Biobase quantsmooth]; }; + beer = derive2 { name="beer"; version="1.2.0"; sha256="0njilbdgrv59ny4vks4xamf00qp3xagkks0sszwqq49lpzdicglj"; depends=[BiocParallel cli edgeR PhIPData progressr rjags SummarizedExperiment]; }; + benchdamic = derive2 { name="benchdamic"; version="1.4.0"; sha256="1f4rnbxxjbd3jyvl6m94hyl15bzxs1zbwyxqkypfmxa7gmj2vcrq"; depends=[ALDEx2 ANCOMBC BiocParallel corncob cowplot dearseq DESeq2 edgeR ggdendro ggplot2 ggridges limma MAST metagenomeSeq MGLM NOISeq phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment tidytext TreeSummarizedExperiment zinbwave]; }; + bgx = derive2 { name="bgx"; version="1.64.0"; sha256="1ylg9bnq8iwax0ap4c19v4mkbq673s8dfv49d94znsryg3fp93dl"; depends=[affy Biobase gcrma Rcpp]; }; + bigPint = derive2 { name="bigPint"; version="1.14.0"; sha256="1smf3w5a60jc0bpip5131ad9ykmnrcd33qi3pc3m50g6kn023wz2"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; + bigmelon = derive2 { name="bigmelon"; version="1.24.0"; sha256="094d43yv8af8sijp43ndcaincnsf3ng32vgwh6bfazlq5d601r6y"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; + bioCancer = derive2 { name="bioCancer"; version="1.26.0"; sha256="17bwd313dnlmb2h78b4ymlih024v9bkmadcaqjdkhai45wbqzwgy"; depends=[AlgDesign AnnotationDbi Biobase clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets httr org_Bt_eg_db org_Hs_eg_db plyr r_import R_methodsS3 R_oo radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; + bioDist = derive2 { name="bioDist"; version="1.70.0"; sha256="1fnx3q5arsilrvnhndplap8h4ydi9bvmlpfllj1li124hn5n2w3d"; depends=[Biobase KernSmooth]; }; + bioassayR = derive2 { name="bioassayR"; version="1.36.0"; sha256="0r56r4qxibgblriyfbd46i8jhc2bfr9ndr8i30920v9kc3n83cav"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; + biobroom = derive2 { name="biobroom"; version="1.30.0"; sha256="02gdc26bs0yx7hb53b8ncipsaw6ynfvjcx64qxkxxq1c4awjkhzy"; depends=[Biobase broom dplyr tidyr]; }; + biobtreeR = derive2 { name="biobtreeR"; version="1.10.0"; sha256="1j6w19k124x46gj2p8f1z0i2c03yhiiy1w0fqf504b2r7wy90jxc"; depends=[httpuv httr jsonlite stringi]; }; + biocGraph = derive2 { name="biocGraph"; version="1.60.0"; sha256="0ysdmv2hyl8jnmr42lkyvgfqb0z89f5p649ahx0ygs6fw0z226xa"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; + biocViews = derive2 { name="biocViews"; version="1.66.0"; sha256="1rgn0agw5m4y8838lxzq1r658h1pblaidmm444yfimjffa8znj23"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; + biocthis = derive2 { name="biocthis"; version="1.8.1"; sha256="0zmiaixknwxv72l4fygrn0qr3mvl7kqfbqgflnavs0wxx6xdjqgn"; depends=[BiocManager fs glue rlang styler usethis]; }; + biodb = derive2 { name="biodb"; version="1.6.1"; sha256="0mbqsias2ajw29d1wgl10y2cjqv3slrsgifccz0kh9l5r6bk28vz"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; + biodbChebi = derive2 { name="biodbChebi"; version="1.4.0"; sha256="02c0zvchkd9xf2gakd2ksa4mk8hd8bvg80paq2hx96xqdznhsh49"; depends=[biodb R6]; }; + biodbExpasy = derive2 { name="biodbExpasy"; version="1.2.0"; sha256="16g7xy6r8ggbvjxjl4frfsvsar8hcwgla7q4mmpr01gv9xjvn059"; depends=[biodb chk R6 stringr]; }; + biodbHmdb = derive2 { name="biodbHmdb"; version="1.4.0"; sha256="0zhwf313wilwmxxyibxx62bp9h6rp9jc7c9l46sbdgbcfkk3zdws"; depends=[biodb R6 Rcpp testthat]; }; + biodbKegg = derive2 { name="biodbKegg"; version="1.4.0"; sha256="1027jxyhz1spc9wk41xscnbhzimfji0xa6zfgld9gzpjms48gp49"; depends=[biodb chk lifecycle R6]; }; + biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.4.1"; sha256="0n5c5h0jq8hkmf9hw1phz46qz66jagd5waaf8mi14qnll532xhwx"; depends=[biodb lifecycle R6]; }; + biodbMirbase = derive2 { name="biodbMirbase"; version="1.2.0"; sha256="1mx95sfga6x5cwd9x4ql7r14rm7s26d2vvdkwhhia1m8qwinzvl7"; depends=[biodb chk R6 stringr]; }; + biodbNcbi = derive2 { name="biodbNcbi"; version="1.2.0"; sha256="0bjw5q9ls7p5pi13rzmax4iqfi5l7b0inga9b96bz18mcq071pqp"; depends=[biodb chk R6 XML]; }; + biodbNci = derive2 { name="biodbNci"; version="1.2.0"; sha256="18kjpc71gis82hkg6h7jn0qqwc3m2dlc6ddmyr9cfmm1wvr3fdc6"; depends=[biodb chk R6 Rcpp testthat]; }; + biodbUniprot = derive2 { name="biodbUniprot"; version="1.4.0"; sha256="1xg4f72maczqm2srscnzj3fhibnsya49d9a00d5r6qg1avc3g33v"; depends=[biodb R6]; }; + biomaRt = derive2 { name="biomaRt"; version="2.54.0"; sha256="0c6agi652kbffqwd1r3c22ncisqaiy3gqbc9fz13767rr71im6lq"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; + biomformat = derive2 { name="biomformat"; version="1.26.0"; sha256="0728fpj05bvna5lpm29pdbn4slfmq16nz35as086ddbl2hhc9ni1"; depends=[jsonlite Matrix plyr rhdf5]; }; + biomvRCNS = derive2 { name="biomvRCNS"; version="1.38.0"; sha256="0n026b744ah5kcnipsyiqqs7vlz5n5im1kgv35i2pgxyzvf7a8sn"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; + biosigner = derive2 { name="biosigner"; version="1.26.0"; sha256="11ncmxy4wqdg30w8a6dgcsywyzda49f9al435fz3pfj5rmlbbrlj"; depends=[Biobase e1071 MultiAssayExperiment MultiDataSet randomForest ropls SummarizedExperiment]; }; + biotmle = derive2 { name="biotmle"; version="1.22.0"; sha256="1sbwbz0xdws31lsh46mfcijqmi6rm050r1d6vwii65q686x5j43w"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; + biovizBase = derive2 { name="biovizBase"; version="1.46.0"; sha256="0k56bq3g5vwnd0vkqg7x7v7i9bakwb8s1yl7k5nwj26k4aw96lw6"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + biscuiteer = derive2 { name="biscuiteer"; version="1.12.0"; sha256="1fq2nj0vclpxavqj5qx7jc3ympg00izxn9fpy4mlhyp9l921z13m"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute IRanges Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + blacksheepr = derive2 { name="blacksheepr"; version="1.12.0"; sha256="0a30w7n4rcsq4h7ggji8nbk1zx4h9ci7di01xnhks898f59w9ii0"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; + blima = derive2 { name="blima"; version="1.32.0"; sha256="1myq7giagr5bhkk96w9dijl01pcqkv288hakv7xbawv5wf5mcima"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; + bluster = derive2 { name="bluster"; version="1.8.0"; sha256="1xi9vl09nm95l35kb9n3pn3j9qxw8976lss3cx0ppwnxd2mjr6vy"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; + bnbc = derive2 { name="bnbc"; version="1.20.0"; sha256="18wwic1d13ywn85p415pwg2bh32qiri0kzwsa9yk7m415l87i123"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; + bnem = derive2 { name="bnem"; version="1.6.0"; sha256="0v7xn2hj8q53vjhzjrc0vvqvw13waf3mkf4zs0nakiwrdhbr0117"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; + borealis = derive2 { name="borealis"; version="1.2.0"; sha256="0ld4q8i8v0q1cjn5kpjxs8f69jrzjrkdp9smdmzqsa9qngl75syx"; depends=[Biobase bsseq cowplot doParallel dplyr DSS foreach gamlss gamlss_dist GenomicRanges ggplot2 plyr purrr R_utils rlang snow]; }; + brainflowprobes = derive2 { name="brainflowprobes"; version="1.12.0"; sha256="17fdig1ja8mqx6jhpplqmyq8314gk2fid8dd2bfbwj61421gqp4d"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; + branchpointer = derive2 { name="branchpointer"; version="1.24.0"; sha256="1900czfg3a9x8fqqqs3x7saph7k4ky6wk0f41d8fjdj88fyxkgsk"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; + breakpointR = derive2 { name="breakpointR"; version="1.16.0"; sha256="0j1f43lhgkapjyxlil9fflqh9nf3andhmvirdcv45y60wvljn4gx"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; + brendaDb = derive2 { name="brendaDb"; version="1.11.0"; sha256="1xardg6ysz9jijsd9rwbcr7dgks61kdlknpvx10r675hsvy4laz6"; depends=[BiocFileCache BiocParallel crayon curl dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr xml2]; }; + bridge = derive2 { name="bridge"; version="1.62.0"; sha256="02rf15f3r1kazxml8mk9mi1zxgglsdfrpbg7ny9w0s65f413grg8"; depends=[rama]; }; + bsseq = derive2 { name="bsseq"; version="1.34.0"; sha256="0rd0ihr1ai1kvly2zf5y2qx3qyhk3ag2mdsrwqnzs67xkv99glsf"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; + bugsigdbr = derive2 { name="bugsigdbr"; version="1.4.1"; sha256="17pkpnyxfdbff3yiqh04fdpr6953vcllm0wa2sqafy817kz3vrpy"; depends=[BiocFileCache vroom]; }; + bumphunter = derive2 { name="bumphunter"; version="1.40.0"; sha256="0jwbhd2fhm1w5slwhz8krnw835a8qb4akm3n3pv867bvi0xnp3g2"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; + cBioPortalData = derive2 { name="cBioPortalData"; version="2.10.1"; sha256="13vvlv2qbrir8582w4p6rq1xkwb0px5sr0k9pk5426vdq7nsw1q1"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; + cTRAP = derive2 { name="cTRAP"; version="1.16.0"; sha256="1k2zd67x5j1w4ra87y3w1zkn7ssld6f7siq6ibx3bks3h54rvj1x"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; + cageminer = derive2 { name="cageminer"; version="1.4.0"; sha256="0nwphmmg0ylw9v9mx88ygv37qaq02n2ypgbvnqx08hb15bk4cr5b"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2]; }; + calm = derive2 { name="calm"; version="1.12.0"; sha256="16ab0hxfk9m3jplwrf5ybxikz7ai54l7xmgv2kcc98ima8lbaml6"; depends=[mgcv]; }; + canceR = derive2 { name="canceR"; version="1.32.0"; sha256="1w5nsbw2m3dbzj5nph5p5rzl0476j2zacd735f1yzl0y2241vrjx"; depends=[Biobase circlize Formula geNetClassifier GSEABase httr phenoTest plyr R_methodsS3 R_oo rpart RUnit survival tkrplot]; }; + cancerclass = derive2 { name="cancerclass"; version="1.42.0"; sha256="1px53j601a17gslyla7msq6cvxghjqpy818cqdxp4ffq13wsrydr"; depends=[binom Biobase]; }; + cardelino = derive2 { name="cardelino"; version="1.0.0"; sha256="1ma4clkrkrjvy12ln2d2smyzzsz9y9554f5wgwmh9kv6s4xc66qs"; depends=[combinat GenomeInfoDb GenomicRanges ggplot2 ggtree Matrix matrixStats pheatmap S4Vectors snpStats VariantAnnotation vcfR]; }; + casper = derive2 { name="casper"; version="2.32.0"; sha256="0ibdfx7fb99zp5p94f5aga6kpnwg19500pg4nlf2yiqddpsc864s"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; + categoryCompare = derive2 { name="categoryCompare"; version="1.42.0"; sha256="1m9kj5ks35wklb30zamzk450sgf01mc1k7a4wi8y1jrp7i32d5ci"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; + cbaf = derive2 { name="cbaf"; version="1.20.0"; sha256="1r34z9v82i5m2mmdrgi6wid2yyys655qp6bi4j637ljh79c1f80s"; depends=[BiocFileCache cBioPortalData genefilter gplots openxlsx RColorBrewer]; }; + cbpManager = derive2 { name="cbpManager"; version="1.6.0"; sha256="0qvlyy5m00nxzyaap8lwc9l5mdgr5pya7x7p56cwcwfhlji1d0wm"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; + ccImpute = derive2 { name="ccImpute"; version="1.0.0"; sha256="1w5fwmf619y8ywzi3ksbssqcfkq1hr0jjjl7bcylbvckm3p4bfa6"; depends=[BiocParallel matrixStats Rcpp RcppEigen SIMLR]; }; + ccfindR = derive2 { name="ccfindR"; version="1.18.0"; sha256="0snxm5zqa93q9hmqlkbij8saw2q0hhh95d12jmffp5yf1n1d8r9s"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ccmap = derive2 { name="ccmap"; version="1.24.0"; sha256="1cb6z30vx3r2d1qdvrjb9qa6m5dglar8yji9dg9mz5yiygdbvwf7"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; + ccrepe = derive2 { name="ccrepe"; version="1.34.0"; sha256="1xnlsf0gird9ya0gd2xqjy6c85q5yrbaxv2kg31cn0wdlg55dgfh"; depends=[infotheo]; }; + ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.10.0"; sha256="1phrn8aisjnbzqh7npvngrnk9m1bxwv6d0as1sf1gy8ks4piy4r7"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; + celaref = derive2 { name="celaref"; version="1.16.0"; sha256="13a0hb72i9vnslsmidgwzdsma6qfxq1syfbij726viwaxl6zmxp7"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; + celda = derive2 { name="celda"; version="1.14.0"; sha256="1ygp9qz5cs190w3758f0h369rg1ngqsrgyp1nw13jxqz9cig47dx"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; + cellHTS2 = derive2 { name="cellHTS2"; version="2.62.0"; sha256="0gkdvdda90m9qq2j5svmrip0kc601zbg7kca4m71qymwvvrdj4nl"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; + cellTree = derive2 { name="cellTree"; version="1.27.0"; sha256="0yfr59fcbdj03ikkpvw1qcxqrjbkz7nkfmb5m1xr4k9qs39bq9sb"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; + cellbaseR = derive2 { name="cellbaseR"; version="1.22.0"; sha256="0i1b5lavzd0jqa5r1l1b3c22ana5vrk7f68385n7g1l8i5fl5ldr"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; + cellity = derive2 { name="cellity"; version="1.26.0"; sha256="0f1d83q3nbvjsk3077793i234yqy71yq6plvvya93vxq32b7ppsh"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; + cellmigRation = derive2 { name="cellmigRation"; version="1.6.0"; sha256="0aj7px50vy27ijx1sgszsxpv13rzsjlsa14m11hwmxdnz1yiihyf"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; + cellscape = derive2 { name="cellscape"; version="1.22.0"; sha256="0bbsq5hqhsv5zs79256iv2w6pid3fdg6yjv86n4fc7qzh9lgkxf5"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; + cellxgenedp = derive2 { name="cellxgenedp"; version="1.2.1"; sha256="1cgbgv6kx6wkqml4pc9ik9n8gb8q1j8nrdbl6kwl77gx97zn1shg"; depends=[curl dplyr DT httr jsonlite rjsoncons shiny]; }; + censcyt = derive2 { name="censcyt"; version="1.6.0"; sha256="0di9d50ak07d8svcq8zhb3bbbr8hjycgh5rhiv4vsi86plj4r7iw"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; + cfDNAPro = derive2 { name="cfDNAPro"; version="1.4.0"; sha256="0441gyjfbi35444hng16zwjmyj74yfnq6m4l1wlcz8bpss57axkj"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr plyranges quantmod rlang Rsamtools stringr tibble]; }; + cghMCR = derive2 { name="cghMCR"; version="1.56.0"; sha256="1c1h987c61camgz8wjlfg7jlkvfgz3xxkjflrnn97dx8kqzd20ll"; depends=[BiocGenerics CNTools DNAcopy limma]; }; + chimeraviz = derive2 { name="chimeraviz"; version="1.24.0"; sha256="05yg31s2jqdpk8rc1jkb7ah6hws4m11jz5chg5mmxadq78qxngzp"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; + chipenrich = derive2 { name="chipenrich"; version="2.22.0"; sha256="02cy0lk2gllrizmk8fwnzk07k2kd4ha3xiynqvp9zgg0hr6wjyd3"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; + chipseq = derive2 { name="chipseq"; version="1.48.0"; sha256="1gmspbf5bmlqgbq280lnh4m9bmhzv6d0aj15dmggizsgb9d34vp5"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; + chopsticks = derive2 { name="chopsticks"; version="1.64.0"; sha256="1kc9a0ir7wz338c5y0lrrn74ik3i4fnh2m3ag5z2kx2xaxp4w90i"; depends=[survival]; }; + chromDraw = derive2 { name="chromDraw"; version="2.28.0"; sha256="0lc782v1m5rm6a0mr8fzhvnv9dw5z3q1rdq6g4yd8vv70579g0ir"; depends=[GenomicRanges Rcpp]; }; + chromPlot = derive2 { name="chromPlot"; version="1.26.0"; sha256="0s9x125mnfxsznbsyylgnax4529zvqdqszmgghgin213dx6jhfcm"; depends=[biomaRt GenomicRanges]; }; + chromVAR = derive2 { name="chromVAR"; version="1.20.0"; sha256="1rwgbicbmszdkr05ksxfsisyhk0a4pvc3jrxbzjyc13jj5h6m5kp"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; + chromstaR = derive2 { name="chromstaR"; version="1.24.0"; sha256="17p22vsmb9h8ap0f2rzyg2r71srj3sxiapzyaz1csad2vfjxfi2r"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; + chromswitch = derive2 { name="chromswitch"; version="1.20.0"; sha256="0ch4jcyr4f130d6cmqqkcvnwq3xfisnns3266m3sf62ng4w1akq5"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; + cicero = derive2 { name="cicero"; version="1.16.0"; sha256="0grzp9k06dz04bw07nf9qka19mara1kplyd24y8mg8208wk949f6"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; + circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.12.0"; sha256="07l8vaqbw36hvs8pyn1gk6dglnmkcmbafvd4rdrhg2wqwnlpsf40"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; + cisPath = derive2 { name="cisPath"; version="1.38.0"; sha256="0g3sl12hrh9asghm3ylz1l1v4hlcrsz47jpihqgkh829w0dz67rf"; depends=[]; }; + cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.36.0"; sha256="0bklip44ls8i8baq8cqh4wm5y4jxn0dyg035iszm209qgkxk8n17"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges S4Vectors seqinr stringr]; }; + cleaver = derive2 { name="cleaver"; version="1.36.0"; sha256="0pmgnw807wn22zxz3z3f2gfjqfqi555858anhp125n2hf8pj6k16"; depends=[Biostrings IRanges S4Vectors]; }; + cliProfiler = derive2 { name="cliProfiler"; version="1.4.0"; sha256="1m7iwmhwlf9xmbmjnlgrxdd5fhawx76sz5lskrphskj0g2xasajc"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; + clippda = derive2 { name="clippda"; version="1.48.0"; sha256="16wcnc0pnxj50bzwlkfsh56g0cdagfk2yjvaz5yqsrh4p609l0y3"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; + clipper = derive2 { name="clipper"; version="1.38.0"; sha256="0isjvpndqgn615vw75kzhy3nr34q18w096y5s3536y8zrdj0ibag"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; + cliqueMS = derive2 { name="cliqueMS"; version="1.12.0"; sha256="1z92mdm5xcnzql63il3pyj6ak31l8phd3qp7scpkbmzcd2311jhm"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; + clst = derive2 { name="clst"; version="1.46.0"; sha256="0ff9mp78jslqw7b240h84s4n4vii5ga2bam9416fzgs0q8pz1whg"; depends=[lattice ROC]; }; + clstutils = derive2 { name="clstutils"; version="1.46.0"; sha256="02x8z1z0h4j6qrv4pyskfbkylzgnzhfyvb31d3jd6gyarazadzrs"; depends=[ape clst lattice rjson RSQLite]; }; + clustComp = derive2 { name="clustComp"; version="1.26.0"; sha256="0zpyxy7zba8j8zx3zr3ph4xvn6q6jp8lv3x99760aw98ccjm6l3h"; depends=[sm]; }; + clusterExperiment = derive2 { name="clusterExperiment"; version="2.18.0"; sha256="04kdiwz8qzr7cr1an1c7a684wqv9pkca0iaym5f069pdjhqvvq0a"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; + clusterProfiler = derive2 { name="clusterProfiler"; version="4.6.0"; sha256="0fm2cz2464xh075p4yl6bha9m6didc41ng4a3flkw1f1cvvpi4g0"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim gson magrittr plyr qvalue rlang tidyr yulab_utils]; }; + clusterSeq = derive2 { name="clusterSeq"; version="1.22.0"; sha256="05ap73pyax6nfb474d2xda5279c8z84pvkshzxwp1q3rb8fn4s6d"; depends=[baySeq BiocGenerics BiocParallel]; }; + clusterStab = derive2 { name="clusterStab"; version="1.70.0"; sha256="0kmmb33mq0rgzp83rih8hb7gv51djfn6iak0b2b9806jx3c1cw5y"; depends=[Biobase]; }; + clustifyr = derive2 { name="clustifyr"; version="1.10.0"; sha256="1y7ndmc6mjs841a6nk4b4njpkjaanardpkh0bzacfj288znpx7dg"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + cmapR = derive2 { name="cmapR"; version="1.10.0"; sha256="1cgjwnn7w944id42qhnh5xw45hjijl4w26j50fcdiwwl18fdpdxf"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; + cn_farms = derive2 { name="cn.farms"; version="1.46.0"; sha256="1l1y1974bibqymibz7smmn8rgn27y3wh5kqkbshh1rd6b9xml0zj"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; + cn_mops = derive2 { name="cn.mops"; version="1.44.0"; sha256="1nvh23v63fj5l53bdipkqh1nvr307n4hsr2qi5ba4qs2hpf94wcz"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + cnvGSA = derive2 { name="cnvGSA"; version="1.42.0"; sha256="11xlk9ljwn5zzjawf3gj7715rxxsh67gxrn2agrfzdhxickf8x4k"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; + coGPS = derive2 { name="coGPS"; version="1.42.0"; sha256="12dxim7dd6nh3pgyn5yg4xkmvv5wpxy202qnarliv2smgs5f9w30"; depends=[]; }; + coMET = derive2 { name="coMET"; version="1.30.0"; sha256="0i9r9gs7s8ami9hpfkmw4hshgly6107ib91n7l7l8dkpljndicfa"; depends=[biomaRt corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; + coMethDMR = derive2 { name="coMethDMR"; version="1.2.0"; sha256="1d602pg9aaqvjwpdjnn67fb98n6sy557lkqfg8rybybjzx705g4h"; depends=[AnnotationHub BiocParallel bumphunter ExperimentHub GenomicRanges IRanges lmerTest]; }; + coRdon = derive2 { name="coRdon"; version="1.16.0"; sha256="095vk28v1a62cqz0vavvbvjij3azr5sr2n1px31zpx91m9jy616v"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; + codelink = derive2 { name="codelink"; version="1.66.0"; sha256="0w3ddmz22dw7nvgl1wxahlqjw2qsjyh0p001mq5kyqsk0b7zdx0y"; depends=[annotate Biobase BiocGenerics limma]; }; + coexnet = derive2 { name="coexnet"; version="1.19.1"; sha256="0zw8a8pqmajqnv5n6i7fn7krwax81sd4c6wqm4zr61fy2blqzv3h"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; + cogena = derive2 { name="cogena"; version="1.32.0"; sha256="0hxxk7ijrbji40v5y4y5r6zv6j6z1vn5dwxfxqz4x91igmv8p3qc"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; + cogeqc = derive2 { name="cogeqc"; version="1.2.0"; sha256="1wjybj2aq84c2lrmfpqcawy6gsvb16vz4qkfwicfbff7bq0nd9qs"; depends=[Biostrings ggplot2 ggtree igraph patchwork reshape2]; }; + cola = derive2 { name="cola"; version="2.4.0"; sha256="0hwkcpbxnh3n4iik492dsxzh1kimg6cwsdlgdjqrzid61rbg5zax"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; + comapr = derive2 { name="comapr"; version="1.2.0"; sha256="1b2727fr7fczcy420rg64xhls63pyw7lqzcv8rjcbazjl6673rkb"; depends=[BiocParallel circlize dplyr foreach GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz IRanges Matrix plotly plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment tidyr]; }; + combi = derive2 { name="combi"; version="1.10.0"; sha256="1522np734gbk4g6m64832f32fsq9fsv0gjgk0qf3axny8l7g3pxy"; depends=[alabama BB Biobase cobs DBI ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; + compEpiTools = derive2 { name="compEpiTools"; version="1.32.0"; sha256="0v5rwcahqz77dcg57agllbvrnfk4cfngzgzib2c2xkjdvyz8bd72"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; + compartmap = derive2 { name="compartmap"; version="1.16.0"; sha256="0vm5ip7gxs2s0lij3qf3fjgfd4b08f5c8visq9dhjx87bc9dgbcz"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; + compcodeR = derive2 { name="compcodeR"; version="1.34.0"; sha256="1cavvgi6gfd06krsabd5amvjlyclnc5lzpy1jl37a5ssppfmymzr"; depends=[ape caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS matrixStats modeest phylolm ROCR sm stringr vioplot]; }; + conclus = derive2 { name="conclus"; version="1.5.0"; sha256="09rk73sxqxsy0zq07n67jxqbzb1rlxlj0phg6987szdjwxmag6jc"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra org_Hs_eg_db org_Mm_eg_db pheatmap rlang Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; }; + condiments = derive2 { name="condiments"; version="1.6.0"; sha256="0wf1nrwp4inzwnw29s7ig2601hi3ppwq50vp1vfd65krfkj5ww3w"; depends=[BiocParallel distinct dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; + consICA = derive2 { name="consICA"; version="1.0.0"; sha256="0rfy6v601sxdpsjkli21927w56jjw0dcav1vnp2sibbb7r2ymrwc"; depends=[BiocParallel fastICA GO_db graph org_Hs_eg_db pheatmap sm SummarizedExperiment survival topGO]; }; + consensus = derive2 { name="consensus"; version="1.16.0"; sha256="180klz7minp2i4v50nkk2svjkhsl5mbv025d2a0h6klmlsmnvyi0"; depends=[gplots matrixStats RColorBrewer]; }; + consensusDE = derive2 { name="consensusDE"; version="1.16.0"; sha256="0v093plal029m3gvn6ng7i130c6dflwjvjvqipfq37cchkqpibf4"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; + consensusOV = derive2 { name="consensusOV"; version="1.20.0"; sha256="0lixy4qg618vqv1i9mjz0v12rnzlakpdbv9wjkbxfc8l5yybqpmh"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; + consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.26.0"; sha256="1cn556l4s498sa5immf310ljf7vfwd1vkxk16nsjcf29m91823ms"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; + contiBAIT = derive2 { name="contiBAIT"; version="1.26.0"; sha256="0yw06870jvgzyangyf8sz5sa07zmb7iq1vhlw96gq2jlxzq4s32h"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; + conumee = derive2 { name="conumee"; version="1.32.0"; sha256="0w4g0ybcxzbbnzdywm0n9ycmbb11jxjgr7fiwmb60483p25hx6z2"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; + convert = derive2 { name="convert"; version="1.74.0"; sha256="14cnr2b8ijnyk8syz211pnr5246hnsj0qia6b07gz372llv0mk2w"; depends=[Biobase limma marray]; }; + copa = derive2 { name="copa"; version="1.66.0"; sha256="1jznqf2n8c2w9d36xp2qwbyfap7kyp4qs3d8bpb8s75hi9yzr04z"; depends=[Biobase]; }; + copynumber = derive2 { name="copynumber"; version="1.38.0"; sha256="1a664bllaq9pbb5cpd01j919qirylvnm8qd49lwlz89jvqjdri19"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; + corral = derive2 { name="corral"; version="1.8.0"; sha256="1xzajapql5dx4chbbcz47qgfm21k82fsd3d0q8626rpgi8lfc5wl"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals reshape2 SingleCellExperiment SummarizedExperiment transport]; }; + coseq = derive2 { name="coseq"; version="1.22.0"; sha256="1fw10gqzxjn8j8109ahcz8a6yyfpxlifwfmj78m5q72nba0vi4aq"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; + cosmiq = derive2 { name="cosmiq"; version="1.32.0"; sha256="0yy6q8b4il7khwar9rbjn9g2jb10ck4lm6znh2lajblsr3zfgl9w"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; + cosmosR = derive2 { name="cosmosR"; version="1.6.0"; sha256="17mjjm3mri34m1ksck8dj7bf8ym10kzinq6zn8plns15zljy4cxp"; depends=[CARNIVAL dorothea dplyr GSEABase igraph progress purrr rlang stringr visNetwork]; }; + countsimQC = derive2 { name="countsimQC"; version="1.16.0"; sha256="0jzxss3lh4jcl8ly3n5jd7xb1zfkg4wwj84q07l0dpnnj0zp3sj0"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 ragg randtests rmarkdown SummarizedExperiment tidyr]; }; + covEB = derive2 { name="covEB"; version="1.24.0"; sha256="19km0q0nmgfvsz5w8k74f735j9sa8s90nvz77lv8afjq04spznxy"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; + covRNA = derive2 { name="covRNA"; version="1.24.0"; sha256="1p3kl3qwriab2c6f8qxl65ssys759fwvcp7jvsc3bbpbkldirz59"; depends=[ade4 Biobase genefilter]; }; + cpvSNP = derive2 { name="cpvSNP"; version="1.30.0"; sha256="0hkrf1488jj8wzzbsxsc71winrmckcql449jawvxsz9ps92r3314"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; + cqn = derive2 { name="cqn"; version="1.44.0"; sha256="1y8g4dx86s95w0h1y98r2hfyphzw648jz5lhrs6xbrnhz6ficzvn"; depends=[mclust nor1mix preprocessCore quantreg]; }; + crisprBase = derive2 { name="crisprBase"; version="1.2.0"; sha256="1ym9hm6q124mzjf7a0fky4qray8ylkjga17lbfr083prnb9jkgi8"; depends=[BiocGenerics Biostrings GenomicRanges IRanges S4Vectors stringr]; }; + crisprBowtie = derive2 { name="crisprBowtie"; version="1.2.0"; sha256="1gzil30hnbrv95y4pr8mzvm5xq8xn19c8lh4kk93480ki8j5ll5s"; depends=[BiocGenerics Biostrings BSgenome crisprBase GenomeInfoDb GenomicRanges IRanges Rbowtie readr stringr]; }; + crisprBwa = derive2 { name="crisprBwa"; version="1.2.0"; sha256="1qyi4vpmharkv8h94rqnm85bg56ks16ba5pcbrcmiwm1mr5v33lp"; depends=[BiocGenerics BSgenome crisprBase GenomeInfoDb Rbwa readr stringr]; }; + crisprDesign = derive2 { name="crisprDesign"; version="1.0.0"; sha256="15icrrg5ha16g3pbbsxck8zl7x8j433jif7l4l6vf3z67x9pyz75"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome crisprBase crisprBowtie crisprScore GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix MatrixGenerics rtracklayer S4Vectors VariantAnnotation]; }; + crisprScore = derive2 { name="crisprScore"; version="1.2.0"; sha256="01zz9hffns2papwczckfhcq7nq832l0hc621k1hx5r2mzrdzsa8g"; depends=[basilisk basilisk_utils BiocGenerics Biostrings crisprScoreData IRanges randomForest reticulate stringr XVector]; }; + crisprVerse = derive2 { name="crisprVerse"; version="1.0.0"; sha256="0l1iv9kwwwncav9y2zpkfk937r9bwni6k2ca0c3yafqwpyljn94f"; depends=[BiocManager cli crisprBase crisprBowtie crisprDesign crisprScore crisprViz rlang]; }; + crisprViz = derive2 { name="crisprViz"; version="1.0.0"; sha256="1f4iv2iy751dvik2awwlk46fqnfgqwn9r2kv2iypiyysk1bgwq8d"; depends=[BiocGenerics Biostrings BSgenome crisprBase crisprDesign GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges S4Vectors]; }; + crisprseekplus = derive2 { name="crisprseekplus"; version="1.24.0"; sha256="1hmyla7qppbd81jans5kxd6z11vrqhgza7gvibyih4czria5sb05"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; + crlmm = derive2 { name="crlmm"; version="1.56.0"; sha256="0nhvwdzl71z3c01vlazrarbrz77c8rf5qmsfc9w9fr054dc9r71i"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; + crossmeta = derive2 { name="crossmeta"; version="1.24.0"; sha256="0b8l44j9jnn1d79m718cyrggfhy5bq59rws2fjvcal0p8mlsl2n8"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets stringr sva tibble XML]; }; + csaw = derive2 { name="csaw"; version="1.32.0"; sha256="1nv8mch67mhzwj793w2lcf98x6iz7kin7xp6ipn6p06a4fxzglz7"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + csdR = derive2 { name="csdR"; version="1.4.0"; sha256="1xyskzy5khbsn1q0fa1824asm2ib8jdaz324dqr6vg7kngqn8sf3"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; + ctc = derive2 { name="ctc"; version="1.72.0"; sha256="098a65fk9la639sqihhsghhgb3hyzv35j6akph908zwq5grsv0c5"; depends=[amap]; }; + ctsGE = derive2 { name="ctsGE"; version="1.24.0"; sha256="18rnpxm55w4gr78a64i20yg7jz04cyjr4rgd88czkkwhkj73q465"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; + cummeRbund = derive2 { name="cummeRbund"; version="2.40.0"; sha256="1fzkhnlgv4zd0slr12d5aichyxsca86p82fyjymiz7f5fqdvqmd9"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; + customCMPdb = derive2 { name="customCMPdb"; version="1.8.0"; sha256="1jqr80qgnhvsxaagpg7ww115wq0m8jh8sf5pg09xmwh3909y48cr"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; + customProDB = derive2 { name="customProDB"; version="1.38.0"; sha256="0qc3as0cmhjw9gv5akb35x8vq8ksn14ycs8yajfaczg8g7216x1i"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; + cyanoFilter = derive2 { name="cyanoFilter"; version="1.6.0"; sha256="0c440ryv56r7ck2l9i93nzaj5wkmnahhkig3l8nvbq0iq22qccir"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; + cycle = derive2 { name="cycle"; version="1.52.0"; sha256="1lahh78i8qv7xfm0k2qkh4chpjl9jp51z4n9q1xks0y5v2934mvs"; depends=[Biobase Mfuzz]; }; + cydar = derive2 { name="cydar"; version="1.22.0"; sha256="02ci2kl4pq47n0bsd19514g8f098249lqldq2ywhrrql0wibggh3"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; + cytoKernel = derive2 { name="cytoKernel"; version="1.4.0"; sha256="1mq3b6fjns0q5pr2vc37lnviy2jq02lsx0bhpc43yna5gv45qv6p"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + cytoMEM = derive2 { name="cytoMEM"; version="1.2.0"; sha256="1pz4sfp43d85xd8dkbdpr9kzl6w6g7lm98zqf3cmiz4mnb7rzjwp"; depends=[flowCore gplots matrixStats]; }; + cytolib = derive2 { name="cytolib"; version="2.10.0"; sha256="1y06x7z3p938kfvjx6zqab9hh1xzlrlhdxczyprx7lsd34ylz46n"; depends=[BH Rhdf5lib RProtoBufLib]; }; + cytomapper = derive2 { name="cytomapper"; version="1.10.0"; sha256="1rh0nfvj97x4p0sx9yiqaxc6c4c4xqaapacjj55d93y3k46d0ii5"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats nnls raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SpatialExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; + dStruct = derive2 { name="dStruct"; version="1.4.0"; sha256="0f83w1fgjrlp91ibcb3xxqvbi27rj3a7fxlg5bwlzaq8lg1yrwdn"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; + daMA = derive2 { name="daMA"; version="1.70.0"; sha256="062nxfry9w674ja3q9zs4df2hvf4wws9jdqpy84g6nb0309vbhqf"; depends=[MASS]; }; + dada2 = derive2 { name="dada2"; version="1.26.0"; sha256="1cdfq4qa4kkfkqnkyxyr109hbvj5li396rm3p2b11qm2pxmfd7kc"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; + dagLogo = derive2 { name="dagLogo"; version="1.36.0"; sha256="0kr61rpw54gjp16nimpj42anr5xn77lnz4bn1dr4d42z7l4ar0zg"; depends=[BiocGenerics biomaRt Biostrings httr motifStack pheatmap UniProt_ws]; }; + dasper = derive2 { name="dasper"; version="1.7.0"; sha256="0r7pv3cv48w3kx89x59yjcfxa9p7sc3aac09vm3g2xm9zhfjny81"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; + dcGSA = derive2 { name="dcGSA"; version="1.26.0"; sha256="05vs7lbdgh1sh7l30ypm86gs2p9a8485qcpdl27y3rqsn4vb97al"; depends=[BiocParallel Matrix]; }; + dcanr = derive2 { name="dcanr"; version="1.14.0"; sha256="0vy6ahav3p8vxj3i9sixdpjz40lgvsp5cz9y62xx1kg641406xpy"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; + dce = derive2 { name="dce"; version="1.6.0"; sha256="1r3dwp0s4hsfzpqa8k0mjffgay5hvz9snsb2ym21n2654k1bg071"; depends=[assertthat dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger magrittr MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang shadowtext tidygraph tidyverse]; }; + ddCt = derive2 { name="ddCt"; version="1.54.0"; sha256="1q98qqxh13ibfxc9cclf3cqawax2qbysg193p0bdh878iyrsvc1y"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; + ddPCRclust = derive2 { name="ddPCRclust"; version="1.18.0"; sha256="0b1pp1njpm8c48kagy7c1qa82bc8wsfxysgjljh4j7fi4alhcxy2"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; + dearseq = derive2 { name="dearseq"; version="1.10.0"; sha256="1f9hz4jp862jm1grf4qzdvnzp17ri0n1rhfafgkc1j73z6whw1b0"; depends=[CompQuadForm dplyr ggplot2 KernSmooth magrittr matrixStats patchwork pbapply reshape2 rlang scattermore statmod survey tibble viridisLite]; }; + debCAM = derive2 { name="debCAM"; version="1.16.0"; sha256="09dm861adbxdy3ncfdxq46wjr4hpn56c66n64xm9gwzkzsrxyc2a"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; + debrowser = derive2 { name="debrowser"; version="1.26.0"; sha256="0iq7j09xgvhkf671b0f0mpv60mwxpg5yg8b173q54zkcqcsww1ck"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; + deco = derive2 { name="deco"; version="1.13.0"; sha256="0d4abif3v62cbas6hl7pfw8q8jihh7nsra76k9cm6kz54qw4fbnw"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; + decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.14.0"; sha256="0agvmgwyk458lhhhspd8243n4897f0q7jf9yqhwsl5wi8011vmqd"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + decontam = derive2 { name="decontam"; version="1.18.0"; sha256="0bk7ia2flnxwa99b8mf3xdvap3xqa4pvpsrgbnyapxbaqxr5zf82"; depends=[ggplot2 reshape2]; }; + deconvR = derive2 { name="deconvR"; version="1.4.3"; sha256="1jz7q4rv3m85bcvarjhqsyc2330fynb0wr5ajd2qffznczk846xb"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit minfi nnls quadprog rsq S4Vectors tidyr]; }; + decoupleR = derive2 { name="decoupleR"; version="2.4.0"; sha256="1872pi2v9gymdpqdhab10ash4b2w8sbk1p635lf0p6s4679syhdi"; depends=[broom dplyr magrittr Matrix purrr rlang stringr tibble tidyr tidyselect withr]; }; + deepSNV = derive2 { name="deepSNV"; version="1.44.0"; sha256="051xcg9lx8plbfhiacrv1wsxfac0qqspysq960ppibkf4m8crk81"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; + deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.12.0"; sha256="1ygsnhrqsr1pa61s7pq7wmyk1i4hcxyylpinnhbav04zjs8rhg1b"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; + deltaGseg = derive2 { name="deltaGseg"; version="1.38.0"; sha256="1m4jdps2x3qx8mal4ryjffi0ph2kzkpqspfz4dq08mn46qn8nxfi"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; + demuxmix = derive2 { name="demuxmix"; version="1.0.0"; sha256="0glqwysbz5vx272s38g4zk0d4zzdnhlsc57yv52g2bxi1vij70an"; depends=[ggplot2 gridExtra MASS Matrix]; }; + densvis = derive2 { name="densvis"; version="1.8.0"; sha256="0fn9m7yykcrxfa7r7hkkh617k3q1xrpwh31dyd0ldwy84cwrldg0"; depends=[assertthat basilisk irlba Rcpp reticulate]; }; + derfinder = derive2 { name="derfinder"; version="1.32.0"; sha256="0v9h3hyfvk72r0d0fx2avmm65dvzb2i06vdx1c3jld8b676ss87r"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; + derfinderHelper = derive2 { name="derfinderHelper"; version="1.32.0"; sha256="118rjmqy53viczdwj70kaszkpg2r2zbq60k49jg7fqb81prdwy04"; depends=[IRanges Matrix S4Vectors]; }; + derfinderPlot = derive2 { name="derfinderPlot"; version="1.32.0"; sha256="1pdfjppzg3l2mh7d29gn22hgkm48bznpalks2jd89wajxkhb6cd2"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; + destiny = derive2 { name="destiny"; version="3.12.0"; sha256="0rgd723azjrdxv441k96vircqb18w31q0ljhksbdrvcp9qb85r6i"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; }; + diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.80.0"; sha256="0k0zd15jlffphg6m3c5jfnn5iilmb1g9sdgjzar4m6yyfzl1m51w"; depends=[minpack_lm]; }; + diffHic = derive2 { name="diffHic"; version="1.30.0"; sha256="1rffxh74bfzzi6dm90b7q0hv50pzb1mrmdicz1jrnksjk5hphfap"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + diffUTR = derive2 { name="diffUTR"; version="1.6.0"; sha256="104pfcrnkya4pra7ch2dlb2218f1vkp4xk3l8xn8k726kil56z4s"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; + diffcoexp = derive2 { name="diffcoexp"; version="1.18.0"; sha256="1p7ksn9ly9if8yf4p9x6kya1vh5z68fjgv7acd417k6c1pznzcqf"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; + diffcyt = derive2 { name="diffcyt"; version="1.18.0"; sha256="10xhvksnnn4m1hly16fwmbr28xgym6a9zkqj8y476jph4wpnhc2s"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; + diffuStats = derive2 { name="diffuStats"; version="1.18.0"; sha256="1p8v2358kkdj50cbw5vvwkcc1dv470ifcggb5cmq2cqxx2ipf3z5"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; + diggit = derive2 { name="diggit"; version="1.30.0"; sha256="0w3m7azy7r2bf9z8sdf7lz7jhnzg9hks4zxrjn30yq6hh8qs53gs"; depends=[Biobase ks viper]; }; + dir_expiry = derive2 { name="dir.expiry"; version="1.6.0"; sha256="1ix31jcfi3dg12pa0sz4k4izwc9rsydy6krl7f949lkam2g7s5f8"; depends=[filelock]; }; + discordant = derive2 { name="discordant"; version="1.22.0"; sha256="1zhnfah6md93d7ksq94xq0462vmcs5gfk1fcs18wwqw3bq967pgb"; depends=[Biobase biwt dplyr gtools MASS Rcpp]; }; + distinct = derive2 { name="distinct"; version="1.10.0"; sha256="09cwkbgvbjbxl7z138fmiyssr8c5sdhlvnn99ga3xm27ma5jj5xv"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo Rfast scater SingleCellExperiment SummarizedExperiment]; }; + dittoSeq = derive2 { name="dittoSeq"; version="1.10.0"; sha256="0sxpwg2cjw70pzdxbdw68nic521w65ryn83mj0pb2m1ncpimin4b"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + divergence = derive2 { name="divergence"; version="1.14.0"; sha256="1khxmngdqsvn77hfiyz732q4z268qwk0r9ydmipz25lnddb25p7m"; depends=[SummarizedExperiment]; }; + dks = derive2 { name="dks"; version="1.44.0"; sha256="1vg6xlw5ia6r1xycd5hrh6s2nxrkrgi34dsd1kfzhkf11d40ydfh"; depends=[cubature]; }; + dmrseq = derive2 { name="dmrseq"; version="1.18.0"; sha256="1zx62lbj0am85p0c1vk06s7qf8294vk8yyh67nkiqc7xgqqwybyk"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; + doppelgangR = derive2 { name="doppelgangR"; version="1.26.0"; sha256="1qfgfvxj44zyqfcj57lphrqgh7yb3lv807bl9xhg7k2gc3rmy5n1"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; + doseR = derive2 { name="doseR"; version="1.14.0"; sha256="0cpjy8whi7nhpyhyz8k2g70l7rhfpg2xcgclxdasbrj695qy79f0"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; + dpeak = derive2 { name="dpeak"; version="1.10.0"; sha256="1cnbvi8x3zjfvbsc71gz8pk7x7fglydhnc8msp6c10sd06blpibs"; depends=[BSgenome IRanges MASS Rcpp]; }; + drawProteins = derive2 { name="drawProteins"; version="1.18.0"; sha256="1gsa1gkpawg5w869syd1anf9j1xz3vd9fxhs170x0jmplvnykgqc"; depends=[dplyr ggplot2 httr readr tidyr]; }; + drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.6.0"; sha256="04y6kh1nw8rlinv33pyavwrvz900283kigjakv5az95fwchc7zap"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; + dupRadar = derive2 { name="dupRadar"; version="1.28.0"; sha256="107m3y9d123cvh5cxlpd6xibi569jzpj4whn8rsbrmgbrj6qghcr"; depends=[KernSmooth Rsubread]; }; + dyebias = derive2 { name="dyebias"; version="1.58.0"; sha256="1jjy1z4f5yg63ds43nrf9gdsq7vsjblfnqc6c12q63l4qgxvbsw5"; depends=[Biobase marray]; }; + easier = derive2 { name="easier"; version="1.4.0"; sha256="1fdfn9bs8676l87jhbpm24c1gz6i272syfp00qwzj2491vibnndp"; depends=[BiocParallel coin DESeq2 dorothea dplyr easierData ggplot2 ggpubr ggrepel matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix]; }; + easyRNASeq = derive2 { name="easyRNASeq"; version="2.34.0"; sha256="0851zpqhks96l0bqbay15nglycg3l354av77crmbdjgii5573f53"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; + easyreporting = derive2 { name="easyreporting"; version="1.10.0"; sha256="1aaymshvz3pcpqzjv57f55w8jzvm905w1v7q6kfp4phd79zdvba8"; depends=[rlang rmarkdown shiny]; }; + ecolitk = derive2 { name="ecolitk"; version="1.70.0"; sha256="0xvlqfb061a53vqfalz1byrrmc24mdqasm3img1i35izqvxz90bi"; depends=[Biobase]; }; + edge = derive2 { name="edge"; version="2.30.0"; sha256="0sqkzmfxnh4zf2lijaizdv4l07qa0fj75axsw76zzsi1pr91yrbn"; depends=[Biobase MASS qvalue snm sva]; }; + edgeR = derive2 { name="edgeR"; version="3.40.0"; sha256="18vap3qp9blncr4sdl9q1szb4qhm46gldhxy3k3abw9fckcvggwg"; depends=[limma locfit Rcpp]; }; + eds = derive2 { name="eds"; version="1.0.0"; sha256="1jfv281pwr3ibr9rnnf41jj1sfj25k0yaln1h175flxkvvhnisba"; depends=[Matrix Rcpp]; }; + eegc = derive2 { name="eegc"; version="1.24.0"; sha256="1rla8x3w4r7da79kxaijgz804ma3s71xs7hm4xj5ccrvg4rvsr61"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; + eiR = derive2 { name="eiR"; version="1.38.0"; sha256="0f9s20b219scx6al1rb8hzq79d40amvc7rg31kvdknfadqsjv5v1"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; + eisaR = derive2 { name="eisaR"; version="1.10.0"; sha256="0ilm97h7rwiz7za9n4dwsvk1r7q0fbb5dbb1z13dwal7c367c2a7"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; + enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.4.0"; sha256="1mn3v88w465779zjbz2csdx0n9fjb39wnbc0s5004f8q54jsw0k5"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; + enrichTF = derive2 { name="enrichTF"; version="1.14.0"; sha256="17jzm9x86rdqn59gr79kl9af9l0scaz20xnv7b273xpscwrxi139"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; + enrichplot = derive2 { name="enrichplot"; version="1.18.3"; sha256="0nzcr23m58z3h0n0frxf26z14j7ilcl4fjy7rqm7f2i1wyld70zl"; depends=[aplot DOSE ggnewscale ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 rlang scatterpie shadowtext yulab_utils]; }; + ensemblVEP = derive2 { name="ensemblVEP"; version="1.40.0"; sha256="1g7574d813p43qcl82vqw8vd3rn485wi3ckb8b6bkjhw09wikb9r"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + ensembldb = derive2 { name="ensembldb"; version="2.22.0"; sha256="1v1in3imqbwak3v9w99l6hq8kihai5xvpgxvg7imna7jn1w8kmji"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + epiNEM = derive2 { name="epiNEM"; version="1.22.0"; sha256="1j41l2qm83cdhm56bnzx0wp31yph7shfxr0kav7wc6dqxkjjhjjf"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; + epialleleR = derive2 { name="epialleleR"; version="1.6.0"; sha256="01g58msm7dnnxgjl2q3c3dfrcw7zvivhvbyxlk3z14y6qcyhn5gq"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; + epidecodeR = derive2 { name="epidecodeR"; version="1.6.0"; sha256="0qfb912xsyp4cvblhpwpa22iziwqz39hfnf8x68d23pnfwnb1v74"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; + epigenomix = derive2 { name="epigenomix"; version="1.38.0"; sha256="0vdrnn2qmcy3znz534m5iynvzw208whcyypw7mhdqvrfzkzb4m4a"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; + epigraHMM = derive2 { name="epigraHMM"; version="1.6.0"; sha256="1pi1mm0m9pzsjm84na046gl4xr9f0jn95mwq8zpg239yj4wa6898"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; + epihet = derive2 { name="epihet"; version="1.13.0"; sha256="1p5sgb438yj6h0fv0v17dhz1pl32vai5zcbmgpgagrd5829a6a7r"; depends=[data_table doParallel foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; }; + epimutacions = derive2 { name="epimutacions"; version="1.2.0"; sha256="1anpx122fcrwldkv5bz5c1cmf6a7y1ai8pc5wjpch7c0nim4a8xg"; depends=[AnnotationDbi AnnotationHub BiocGenerics BiocParallel biomaRt bumphunter ensembldb epimutacionsData ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges isotree matrixStats minfi purrr reshape2 robustbase rtracklayer S4Vectors SummarizedExperiment tibble TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + epistack = derive2 { name="epistack"; version="1.4.0"; sha256="06z380js0hgnps8nkfrk2ay7s8fyqbndipavk5ipihbp80yzmgpx"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors SummarizedExperiment viridisLite]; }; + epistasisGA = derive2 { name="epistasisGA"; version="1.0.0"; sha256="1qgq3j71sr0rlbp0h9xniy4nhsi9dhlxqky78fk2dwly27fqlrni"; depends=[batchtools BiocParallel data_table ggplot2 igraph matrixStats qgraph Rcpp RcppArmadillo survival]; }; + epivizr = derive2 { name="epivizr"; version="2.28.0"; sha256="13y9wc28fkn2zvl68qf1jwxcd3kph98iyfw6p7i7c3ghsphmml56"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + epivizrChart = derive2 { name="epivizrChart"; version="1.20.0"; sha256="1yr03i5da7nwyg750ikm6m10x9w4pi34s19xszg87qh2hd15h2ll"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; + epivizrData = derive2 { name="epivizrData"; version="1.26.0"; sha256="0g68ncr2gxzb6s98aal7fb64bpbyzfya9bv6b6n0kqv6xvvm88yb"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; + epivizrServer = derive2 { name="epivizrServer"; version="1.26.0"; sha256="1db4hgnal7lrzp8b3dmsqv8z4ddw0lsgjmivl1s5dihvnmpsj1k8"; depends=[httpuv mime R6 rjson]; }; + epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.26.0"; sha256="0g5qpw9kcsrrqi86h0pz4jlz82h3czs34hpxzz0b2bnqrx44ys5m"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; + erccdashboard = derive2 { name="erccdashboard"; version="1.32.0"; sha256="12wvbikm11kyvy81gyw513q2mjh4vai0l8lwdnaazan1x1k8pgr8"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; + erma = derive2 { name="erma"; version="1.14.0"; sha256="06zxqzbzb0jrk357900gv1r2n81i49rbmrxla02f879kq2ik9cyd"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; + esATAC = derive2 { name="esATAC"; version="1.20.0"; sha256="1ndv5102aycv5swi08c9gvy66cpx2p2k18bncbl134y1c9ss86fk"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; + escape = derive2 { name="escape"; version="1.8.0"; sha256="1wb8876506m5bprzbkp6zfa3mv87qyadkffv6ph5m207ixwx502d"; depends=[BiocParallel broom data_table dplyr ggplot2 ggridges GSEABase GSVA Matrix MatrixGenerics msigdbr patchwork reshape2 rlang SingleCellExperiment stringr SummarizedExperiment UCell]; }; + esetVis = derive2 { name="esetVis"; version="1.24.0"; sha256="1vnld99li8a5391k185q0xf5fl00q0k76dk9k95b4nx2zmajs7sv"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; + eudysbiome = derive2 { name="eudysbiome"; version="1.28.0"; sha256="0q6x3nlvarhgc1fq5j4h7hxq5dcmfm0fgm3lmgz63bcbpsf60n5g"; depends=[Biostrings plyr R_utils Rsamtools]; }; + evaluomeR = derive2 { name="evaluomeR"; version="1.14.0"; sha256="0wjmm2wzqprn0v0vn90cc3b3wsa274b305p661fdpsql4714jmrq"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; + exomeCopy = derive2 { name="exomeCopy"; version="1.44.0"; sha256="11a95rpqzc5502s75ar703bv9hisgfx7yqdf03n0q1qh6ykil35g"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + exomePeak2 = derive2 { name="exomePeak2"; version="1.10.0"; sha256="1j8l3q5bq3yb1889vjpk8l9qzrmg7lv38m7jb57cb9q67sflqjzs"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DESeq2 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magrittr mclust Rsamtools rtracklayer S4Vectors speedglm SummarizedExperiment]; }; + extraChIPs = derive2 { name="extraChIPs"; version="1.2.2"; sha256="1cshpsbabzhz36c9vvzlpmbqlaqgy7x1sah2ikgdh8rzgqny65gk"; depends=[BiocIO BiocParallel broom ComplexUpset csaw dplyr edgeR EnrichedHeatmap forcats GenomeInfoDb GenomicInteractions GenomicRanges ggforce ggplot2 ggrepel ggside glue Gviz InteractionSet IRanges limma RColorBrewer rlang Rsamtools rtracklayer S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect vctrs VennDiagram]; }; + fCCAC = derive2 { name="fCCAC"; version="1.24.0"; sha256="1r4rdbv1xv8rwsna8w89fzd76hzspf825fxzcn475ll31gmsxsrv"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; + fCI = derive2 { name="fCI"; version="1.28.0"; sha256="1jiws5q3ppq0z0s71nhb6fs63470v2di45y0gdf7anjnpxgjcjq9"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; + fabia = derive2 { name="fabia"; version="2.44.0"; sha256="1fjysjnanjpaywcb4jk8n66mjc3ffn4jscvwqfkpjh7d757xc716"; depends=[Biobase]; }; + factDesign = derive2 { name="factDesign"; version="1.74.0"; sha256="1wimcf0xnrpfahda9lj90xqcnq76yw7swbgasrdinay37a3dv0ki"; depends=[Biobase]; }; + factR = derive2 { name="factR"; version="1.0.0"; sha256="1ql328w2g6ds74vby36h4d9c7drwby2ah82mqgkjbqw01qr6gk75"; depends=[BiocGenerics BiocParallel Biostrings crayon data_table dplyr drawProteins GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges pbapply purrr RCurl rlang rtracklayer S4Vectors stringr tibble tidyr wiggleplotr XML]; }; + famat = derive2 { name="famat"; version="1.8.0"; sha256="1l54ggmqbwj0p3zwln237pggalykmkd46jddaz85gvfhv664bvfn"; depends=[BiasedUrn clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr mgcv ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; + farms = derive2 { name="farms"; version="1.50.0"; sha256="1zd5f6prz2g00nvchfx4zaw3v722dn9149y205n3c0zv5q6p4w70"; depends=[affy Biobase MASS]; }; + fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.34.0"; sha256="0c85gwdbkw6z8xli3c7q6smwpalllr3ad4x5j40mjndnqrl0pzmm"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; + fastreeR = derive2 { name="fastreeR"; version="1.2.0"; sha256="04srd57vv4hhrqbysjh0v9cdhchixif4rkl10aqfjflyw72q5his"; depends=[ape data_table dynamicTreeCut R_utils rJava stringr]; }; + fastseg = derive2 { name="fastseg"; version="1.44.0"; sha256="1m1x7xmbxwa15vzd45h16pnib944f20pwinx1pyhba5hcngkikfi"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; + fcScan = derive2 { name="fcScan"; version="1.12.0"; sha256="0z83ncjxw9x8nvc6pncrvpf6lmamvgrv56j96s1f0x9jydk18chy"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; + fcoex = derive2 { name="fcoex"; version="1.12.0"; sha256="01k8v41yqrlcq8x9aaxjfxd477g219jlawnjm2c6k34028ybsc52"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; + fdrame = derive2 { name="fdrame"; version="1.70.0"; sha256="1p382fak15w2ny5kbvlwdl8iyi28y1avrsl0xk0ds4a0njljxp06"; depends=[]; }; + fedup = derive2 { name="fedup"; version="1.6.0"; sha256="0x0y32zr2h0x8ziv6z0q3dyalpbc4xbd3axqgdqf70mapf8wa5gc"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; + ffpe = derive2 { name="ffpe"; version="1.42.0"; sha256="0r0xw11c14bkzwis8ppfm8s6mw6k9fx14bnp4r02bcjgq5ih1jvq"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; + fgga = derive2 { name="fgga"; version="1.6.0"; sha256="18c2klg52kmnx0rrb3n0y12l1xq9yl0krjpzifb3i1gl7k66clcf"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; }; + fgsea = derive2 { name="fgsea"; version="1.24.0"; sha256="1frl5mchbrgqyxxdlw76qqq5i8vv2fdmy8xl8h8c8cvvmlz393qk"; depends=[BH BiocParallel cowplot data_table fastmatch ggplot2 Matrix Rcpp]; }; + fishpond = derive2 { name="fishpond"; version="2.4.0"; sha256="112jd53wbiv1w0n8dc4qn6257wbbbg5i20s9wlvaw98jma94afa6"; depends=[abind GenomicRanges gtools IRanges jsonlite Matrix matrixStats qvalue S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; + flagme = derive2 { name="flagme"; version="1.54.0"; sha256="112vib2g3cvniqn800pn2ifalp5q2l1l7mvqfq8zhwp64i6qxivm"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; + flowAI = derive2 { name="flowAI"; version="1.28.0"; sha256="18zrlnjw89iglxhw65ys8x4r44pdzp5chrgwx7w44sh7yd8576g9"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; + flowBeads = derive2 { name="flowBeads"; version="1.36.0"; sha256="1ng2c0vm2qldipzjnks2qyv9ngwc489jwqfsa4kfiyvhm5dwm1hw"; depends=[Biobase flowCore knitr rrcov xtable]; }; + flowBin = derive2 { name="flowBin"; version="1.34.0"; sha256="1d6bkidvxw76jj8c64d2r0bggxss3xyy97w3qrhix8613w63adcs"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; + flowCHIC = derive2 { name="flowCHIC"; version="1.32.0"; sha256="18mcywl4857wmka63rcnvp2xvh8wj5r8gvbsri9a3f4190wg8yn9"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; + flowCL = derive2 { name="flowCL"; version="1.35.0"; sha256="1jxr0zn3fgm5nqishssxh332mmxfz3fc9zgshn0lbq4avxc2x128"; depends=[graph Rgraphviz]; }; + flowClean = derive2 { name="flowClean"; version="1.36.0"; sha256="1wqwq8fw0dk78l43p4cjzll3psc0d4mg7gjckddvpmzlg6w4ha3k"; depends=[bit changepoint flowCore sfsmisc]; }; + flowClust = derive2 { name="flowClust"; version="3.36.0"; sha256="1l1lfgm6x06gyzda36m6gvqmb91zbrz8m83b1fnfzpxkhqha20yq"; depends=[Biobase BiocGenerics flowCore graph]; }; + flowCore = derive2 { name="flowCore"; version="2.10.0"; sha256="0j0ryyz3vcih964is5gdm2jp39ssdli9q6r03q6rj9nwzplq5asj"; depends=[BH Biobase BiocGenerics cpp11 cytolib matrixStats Rcpp RProtoBufLib S4Vectors]; }; + flowCut = derive2 { name="flowCut"; version="1.8.0"; sha256="0p66wcr940m5nvl024izqn3w0x6zmp0n7j43xj70arfcxrxp9gxd"; depends=[Cairo e1071 flowCore flowDensity]; }; + flowCyBar = derive2 { name="flowCyBar"; version="1.34.0"; sha256="1nbg49s18mxvr5pzv4lx4hvdrwxn5spagxn71zid5kgk13f142a6"; depends=[gplots vegan]; }; + flowDensity = derive2 { name="flowDensity"; version="1.32.0"; sha256="1gflq7s7akfjha7ijddgh9qshzwi1yhgp2s5p6gll0rsfaicaxs9"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; }; + flowFP = derive2 { name="flowFP"; version="1.56.3"; sha256="04f67vnn2ccxp8mw2sk2riqh0v4hk46fz1i66jsdp6j1vd650r7y"; depends=[Biobase BiocGenerics flowCore flowViz]; }; + flowGraph = derive2 { name="flowGraph"; version="1.6.0"; sha256="1srpzkvk69v90bqxz9mivfp69zvn45x6jbgvfnxwq0yz3s6x95is"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; + flowMap = derive2 { name="flowMap"; version="1.36.0"; sha256="11dvjmbyv46l55cp4jklqwx4000xhc3pxmwrpa1z2sbladmd9hiq"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; + flowMatch = derive2 { name="flowMatch"; version="1.34.0"; sha256="1c0qxypv5814m9fwrpzl44hii8fcn35xmj6wyimclnar3q0r4rs6"; depends=[Biobase flowCore Rcpp]; }; + flowMeans = derive2 { name="flowMeans"; version="1.58.0"; sha256="1hmr2i5svg1wvdgqhnp25k1c21p2pdd0ia9py5kp9sm5qvc9vngw"; depends=[Biobase feature flowCore rrcov]; }; + flowMerge = derive2 { name="flowMerge"; version="2.46.0"; sha256="1sr1icmkd27k7zzykwml44aqkk6fk1p697ndw9qsw6vvv0zp4d1n"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; + flowPeaks = derive2 { name="flowPeaks"; version="1.44.0"; sha256="0n3sbb9acvj5srrlxv58n858s9nns62y0pj46pplx5gv7i8hxbcp"; depends=[]; }; + flowPloidy = derive2 { name="flowPloidy"; version="1.24.0"; sha256="0x6cd0ng39jgwd3hxwfwqkk3grqb3dalv84yyp7cfc0y64nkpv64"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; + flowPlots = derive2 { name="flowPlots"; version="1.46.0"; sha256="1vqx2qww5y5p1mcv99qlm1k077gnd4dwmi83ax31rz5kqip2g7b0"; depends=[]; }; + flowSpecs = derive2 { name="flowSpecs"; version="1.12.0"; sha256="1xf0mf9s0srn7ch5hkl37d5igp20pi8jl52b06azdblqsgv3h0cr"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; + flowStats = derive2 { name="flowStats"; version="4.10.0"; sha256="10xq0rfnshvam2yh34566ywmsby44aa1fg8wqwmllm202rhcgl2p"; depends=[Biobase BiocGenerics cluster corpcor fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mnormt ncdfFlow RColorBrewer rrcov]; }; + flowTime = derive2 { name="flowTime"; version="1.22.2"; sha256="0qmd2a50qy1fldqhp25nzafxi0jv7x2v2fhpmfckwn0qwkg3splp"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; + flowTrans = derive2 { name="flowTrans"; version="1.50.0"; sha256="0adhha052by515v43z5kvcr4hzv6z1mhx3jry1x4x75zj51wj8pm"; depends=[flowClust flowCore flowViz]; }; + flowVS = derive2 { name="flowVS"; version="1.30.0"; sha256="0sv05dzcik2qqvja0ag3ag3qpg5r89rzynil81z5m3b62xq1i6nz"; depends=[flowCore flowStats flowViz]; }; + flowViz = derive2 { name="flowViz"; version="1.62.0"; sha256="0yz2b3l0bv5i7vrr893wrs3jl215i17m2hr92iisdc6mh9i0lpz8"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; + flowWorkspace = derive2 { name="flowWorkspace"; version="4.10.0"; sha256="07w2pnnzmivfc621c8pvndqrn1k245cwjrb0nnk2i85i3si4j9c3"; depends=[BH Biobase BiocGenerics cpp11 cytolib data_table DelayedArray dplyr flowCore ggplot2 graph matrixStats ncdfFlow RBGL Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; + flowcatchR = derive2 { name="flowcatchR"; version="1.32.0"; sha256="1flq3n3j57yxq00dqqwl45xxacw7qgn2raqmnczgnsflihyysldz"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; + fmcsR = derive2 { name="fmcsR"; version="1.40.0"; sha256="00xi01wz61ip8pnbrpnpp8hncb8gyiw69qkbg0cl425rv6qjb3mr"; depends=[BiocGenerics ChemmineR RUnit]; }; + fmrs = derive2 { name="fmrs"; version="1.8.0"; sha256="1nw7ibbqw30p9mj3vi7pd3ixry6fwai02mg3rys48bld0aipw21l"; depends=[survival]; }; + fobitools = derive2 { name="fobitools"; version="1.6.0"; sha256="0i3bdg22750hf9l3hkgz5vjq0ysvr99571zrdabmq7m54788fl9w"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; + frenchFISH = derive2 { name="frenchFISH"; version="1.10.0"; sha256="1iylq196bl7ysypvcfqpp5gz5c8ax79p3icbyl31cxmj9ssf486a"; depends=[MCMCpack NHPoisson]; }; + frma = derive2 { name="frma"; version="1.50.0"; sha256="0pn8b7fgz1ys3pm603ya6nkngbc9q8dsx3zxijdzf1v0b1sm1fi1"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; + frmaTools = derive2 { name="frmaTools"; version="1.50.0"; sha256="0j6z94icgs9j1ryxr1a2fv9p14nzl3zy695fbc6d87gm0ccjy745"; depends=[affy Biobase DBI preprocessCore]; }; + funtooNorm = derive2 { name="funtooNorm"; version="1.22.0"; sha256="0qf2c28r6jv4cf8qpag4zi8k64b5x3mqs9jc6g8iy9v6323vdcpy"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; + gCrisprTools = derive2 { name="gCrisprTools"; version="2.4.0"; sha256="0rmxrvb97844qjis945drmk3z63ks89c587ysxc1ldka503za7rj"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; + gaga = derive2 { name="gaga"; version="2.44.0"; sha256="19sjqlrjxcphs5a3mzwr0a7a504ap2zpwnzlrzmhad7v1dgicn5g"; depends=[Biobase coda EBarrays mgcv]; }; + gage = derive2 { name="gage"; version="2.48.0"; sha256="08qvg1cmrln7w5z33r81kz1zjs8fcj3qbxm1crbsazvb6gdpqyyi"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; + gaggle = derive2 { name="gaggle"; version="1.66.0"; sha256="16w40jkaz1nhvzwg3q62mzigh9kpvhhyky1bnz2bwjbl49fspvqg"; depends=[graph rJava RUnit]; }; + garfield = derive2 { name="garfield"; version="1.26.0"; sha256="0cm2lg9qsnlp60i3rc2c4d6xc73r285rznkgdkw646c62s48lhs8"; depends=[]; }; + gcapc = derive2 { name="gcapc"; version="1.22.0"; sha256="1n3g6fvj86q9n6q3ccmj6ns0gdd4sqfdm43sh1hpxkid9v88209y"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; + gcatest = derive2 { name="gcatest"; version="1.28.0"; sha256="0c92g636x8kcsypw8slmnib472prh7mqbkn1wn5silprs6akfg9g"; depends=[lfa]; }; + gcrma = derive2 { name="gcrma"; version="2.70.0"; sha256="0a3wjwjgjkpmfvgg0b4jc1rkwzsqrjbaziydjfnkll4rw9xcavy1"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; + gdsfmt = derive2 { name="gdsfmt"; version="1.34.0"; sha256="1ck3qq4vhjp6vvicpldr7d2rkpspp5albjkbqjbshnbq11fhrk06"; depends=[]; }; + geNetClassifier = derive2 { name="geNetClassifier"; version="1.38.0"; sha256="1ahlml1ssjmg126ki1phdprq4v0nawzbbfq8jray5ypaj32qx3r2"; depends=[Biobase e1071 EBarrays minet]; }; + gemini = derive2 { name="gemini"; version="1.12.0"; sha256="12p44p3nzn32am2m609k64iy4lfj42dygdxmb770ld8lpihhrkmz"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; + gemma_R = derive2 { name="gemma.R"; version="1.0.0"; sha256="1xgjms6hk4b0ilm769abqkvqs3zs6za1kbg2banl1z99b5ksvyqf"; depends=[Biobase bit64 data_table glue httr jsonlite lubridate magrittr memoise rappdirs rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + genArise = derive2 { name="genArise"; version="1.74.0"; sha256="19yrrmqb83zg075cbwfb2k3s96fvhl19bhjc5v9xva12k3n14dxh"; depends=[locfit tkrplot xtable]; }; + genbankr = derive2 { name="genbankr"; version="1.26.0"; sha256="06nkwpsaqrmja9731d3i420f1i8v3vzq20ih44cwxnd7a0zja288"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; + geneAttribution = derive2 { name="geneAttribution"; version="1.24.0"; sha256="00imcb2slqfflcm3jalcjspqv8m9kyfvv1m1nxlxbdaa4qgrn9yx"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; + geneClassifiers = derive2 { name="geneClassifiers"; version="1.22.0"; sha256="03ccb749frf3pp2rqcyf1jly7rpld3nrg61507xvk3x841nxnas4"; depends=[Biobase BiocGenerics]; }; + geneRecommender = derive2 { name="geneRecommender"; version="1.70.0"; sha256="0iki40fg9mdkj131sc3f4wj6b4mz0jidpbzyxskcdm4l81ar8amv"; depends=[Biobase]; }; + geneRxCluster = derive2 { name="geneRxCluster"; version="1.34.0"; sha256="0amxn2gw2k4hvhxy446v7f4s4jcgm5mrv1l1afv3svmlpq57llrb"; depends=[GenomicRanges IRanges]; }; + geneXtendeR = derive2 { name="geneXtendeR"; version="1.24.0"; sha256="0b0p0p00261g296a0bwzl9fnmd5gky8l3dd33l8a4v5p08kfciz9"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; + genefilter = derive2 { name="genefilter"; version="1.80.1"; sha256="0zi53qi0qxcndf4305vknywgclbz7fm96sgl9vr4gf7725ji4j0i"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; }; + genefu = derive2 { name="genefu"; version="2.30.0"; sha256="0s10bz0iis6kwbb9ss9m0bz7al52yq9r0i9gcn8zvzb3533zr5mk"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; + geneplast = derive2 { name="geneplast"; version="1.24.0"; sha256="161bgb6b4bq923zpjla4z8c0xw4q754igimpf7kv8kqnbpnmncx1"; depends=[ape data_table igraph snow]; }; + geneplotter = derive2 { name="geneplotter"; version="1.76.0"; sha256="094v4skdvsnc7bp3acj801ih022w9k96f2b857326vd19khz0ava"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; + genoCN = derive2 { name="genoCN"; version="1.50.0"; sha256="1m53f6yd692rsrhhr1kq4mwv13kmjlkq8cvcbkn736vbpq07j743"; depends=[]; }; + genomation = derive2 { name="genomation"; version="1.30.0"; sha256="098ldnh45f48145jfsbdw5dqv5yiqkfci1fy6h6gjz7nh3dvnil5"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; + genomeIntervals = derive2 { name="genomeIntervals"; version="1.54.0"; sha256="0kl280hdqiqkzb21l4z49jkidvr8s5bzdxpl38ci8ljia5imi38y"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; + genomes = derive2 { name="genomes"; version="3.28.0"; sha256="1lsmcz2l4mv62q7w2rncb0m92jwhz4p05yfqqk0apjv1hffc3y9j"; depends=[curl readr]; }; + genomicInstability = derive2 { name="genomicInstability"; version="1.4.0"; sha256="0553wd872zlfwqily7pww9frpn40jqp8i0hgg8sf1qmjn9apj24f"; depends=[checkmate mixtools SummarizedExperiment]; }; + genotypeeval = derive2 { name="genotypeeval"; version="1.30.0"; sha256="0mi1d86i4v8gafwszy978n61s5pszrsmbh1in4nggdqwvwnvkqnl"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; + gep2pep = derive2 { name="gep2pep"; version="1.18.0"; sha256="1bijky1qjp5nw3w27nsl9w4bq41zqx98ki7w2s3mz0qz6hwahnw1"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; + gespeR = derive2 { name="gespeR"; version="1.30.0"; sha256="0mrfc7mfb7q2vlw4bppjgpgna4h7s3sidiv5lpjqxbi6cmva6ka0"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; + getDEE2 = derive2 { name="getDEE2"; version="1.8.0"; sha256="1yclldn6hfjdbb5gc6q2kdfz65hxx2ija3apramvhwcbq2h1ygpp"; depends=[htm2txt SummarizedExperiment]; }; + geva = derive2 { name="geva"; version="1.6.0"; sha256="00vkg5gil1jr1hv1swccxhs9iyrn2vjrggrf04y6svfqcs3h9hh8"; depends=[dbscan fastcluster matrixStats]; }; + ggbio = derive2 { name="ggbio"; version="1.46.0"; sha256="1gm3y1nx0ah8wcrg2dh1xd688izm2sijz7bhgsasxckmmkmkp60g"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + ggcyto = derive2 { name="ggcyto"; version="1.26.3"; sha256="0ml07pj1pimr7gd0hv814aarg0g8xndq1j4yn3p8x01c2drrrlzw"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; + ggmanh = derive2 { name="ggmanh"; version="1.2.0"; sha256="1igvm20k3y0kfa5ia45ynyp9d90c5czjbdz95dvj1gzjy7ql5c4j"; depends=[gdsfmt ggplot2 ggrepel RColorBrewer rlang scales SeqArray]; }; + ggmsa = derive2 { name="ggmsa"; version="1.4.0"; sha256="0pqxf7dlb403xj4d5s683k5zdakwgq3ic98lk43dl0ib19mg3dih"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 ggtree magrittr R4RNA RColorBrewer seqmagick statebins tidyr]; }; + ggspavis = derive2 { name="ggspavis"; version="1.4.0"; sha256="00s1xadh164adziszqjfzcznjjpbcf805xshp0c8qr24g0d86jim"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + ggtree = derive2 { name="ggtree"; version="3.6.2"; sha256="177nq6arhxp0x6zsf2c6cn3xxwfk65dihbpni6mb9ifgnmfqdjmx"; depends=[ape aplot cli dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; + ggtreeDendro = derive2 { name="ggtreeDendro"; version="1.0.0"; sha256="1i562x3f28wm5ac5izzpriwh9ywqq40zbbv5g70vjyqcwsh35wh4"; depends=[ggplot2 ggtree tidytree]; }; + ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.8.1"; sha256="0sbjkljv8zj5plr4az5hiz2m0bjnqfgrwcd02rmlrnxhbzj2kcj6"; depends=[cli ggnewscale ggplot2 ggtree rlang tidytree]; }; + girafe = derive2 { name="girafe"; version="1.50.0"; sha256="0kv6s77fs6rgrrv5hcr8qc86ida0qrwcfzby2xcyris0fk56k5sc"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; + glmGamPoi = derive2 { name="glmGamPoi"; version="1.10.0"; sha256="12jbqigg4k2ngrk2anbrrxrwkp57bbzdz492lg8lc6w1gygp5yip"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array MatrixGenerics matrixStats Rcpp RcppArmadillo rlang SingleCellExperiment SummarizedExperiment]; }; + glmSparseNet = derive2 { name="glmSparseNet"; version="1.16.0"; sha256="1573cclc2qn4mhw24k7ab75a9inc7z205b0j85favmvv1zcyqal4"; depends=[biomaRt digest dplyr forcats futile_logger futile_options ggplot2 glmnet glue httr Matrix MultiAssayExperiment readr reshape2 stringr SummarizedExperiment survminer]; }; + globalSeq = derive2 { name="globalSeq"; version="1.26.0"; sha256="0l4n755v8gxxrxqgzhks4yz06rr3m703zaaavh0fyryk2mnijpip"; depends=[]; }; + globaltest = derive2 { name="globaltest"; version="5.52.0"; sha256="1qcrs7dasb1aaws3zkiipznlc1z6i7zijhcsfv6hw3d9wpb0np9k"; depends=[annotate AnnotationDbi Biobase survival]; }; + gmapR = derive2 { name="gmapR"; version="1.40.0"; sha256="03fi4ld4f102xch75z6s67kb27mvyg5zik5n59ni4zdiipi9i2cl"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + gmoviz = derive2 { name="gmoviz"; version="1.10.0"; sha256="0vafsa3i8z08bfl4x0adlg3bf0jdw4a7zb459cw7bfdkkw8g4850"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; + goProfiles = derive2 { name="goProfiles"; version="1.60.0"; sha256="0wkvb79lb309ff6iv8p23z9rwrrv7qha86ngs0ag670mpm9yra5j"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; + goSTAG = derive2 { name="goSTAG"; version="1.22.0"; sha256="06wp18i25c35w651gz9xl9x4yklx52vrz6r5pr5z15pgwjc0n5hy"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; + goSorensen = derive2 { name="goSorensen"; version="1.0.0"; sha256="0vv8wx6213wawr9zvy0x8nlr4cj6ccpgfasynn7qi85hmsx3ygfm"; depends=[clusterProfiler GO_db goProfiles org_Hs_eg_db]; }; + goTools = derive2 { name="goTools"; version="1.72.0"; sha256="1h9aj2n8w7z04jjhd8gabmsvr4ib0vhms3iiry00g3xp68yc8zdg"; depends=[AnnotationDbi GO_db]; }; + goseq = derive2 { name="goseq"; version="1.50.0"; sha256="0x89lv84l3qcahca54njcza326553zij2xyagy18mwlprdrq4iy8"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; + gpls = derive2 { name="gpls"; version="1.70.0"; sha256="0kxk22l9rm4kxlf0mr4zb01nr2vlia1g4xq9fsd6fdn6d535k1ci"; depends=[]; }; + gpuMagic = derive2 { name="gpuMagic"; version="1.14.0"; sha256="02ksc7cls7q8yrcsr0i15i6rb3nyzxapafg0zkwgj55x28gy0q9x"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; + granulator = derive2 { name="granulator"; version="1.6.0"; sha256="0im7xhvdxm97hda6zwj22xlcinyjqi2jfykw7mi091z2d0by7rln"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; + graper = derive2 { name="graper"; version="1.14.0"; sha256="12r1h17w9fcjn18kijb40a1hrpxd8acagva5hhzxsfj67q76chnn"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; + graph = derive2 { name="graph"; version="1.76.0"; sha256="1hdbxjvgkxb9m341i9qbskb41g2z8qifkhgkpj2xb20s2dnxn3cc"; depends=[BiocGenerics]; }; + graphite = derive2 { name="graphite"; version="1.44.0"; sha256="0gkjab12ncag1vslc5bwlr0m5ac3ifq9ka5nfq7ckrpns98s7k0w"; depends=[AnnotationDbi graph httr purrr rappdirs rlang]; }; + groHMM = derive2 { name="groHMM"; version="1.32.0"; sha256="1as3k6avyc4l7saw02x0ql68c06msvs1s824vc1xg6lkdsi4lsyc"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; + gscreend = derive2 { name="gscreend"; version="1.12.0"; sha256="0d8ffg4mis6hy4xx6f8ry5vxd2cilzxws56jqpv8diw0dnvfv1dz"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; + gsean = derive2 { name="gsean"; version="1.18.0"; sha256="0gvir3pdshsv22v2q619lzsi2wwyb5bql3vsgmzc3z1nj6jij0zr"; depends=[fgsea PPInfer]; }; + gtrellis = derive2 { name="gtrellis"; version="1.30.0"; sha256="09f20qam59iwr48g854b7ydbsbqy90mdy83i2i0am4gybv5isgqg"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; + gwascat = derive2 { name="gwascat"; version="2.30.0"; sha256="0sj51cli1p8k7z1nl5rfswjlzrk9cqnpr1a1pr618gk74kfwqf5a"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; + gwasurvivr = derive2 { name="gwasurvivr"; version="1.16.0"; sha256="0rrcykwn922wwqrz6gayvwid8hpfqms14cgzvnqh9gcwgcjjrica"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; + h5vc = derive2 { name="h5vc"; version="2.32.0"; sha256="09dczq9yl28zy2jih24blxlpsmkphwaks0hlp3yl5ibfwdnihnk9"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; + hapFabia = derive2 { name="hapFabia"; version="1.40.0"; sha256="09c5ra1smy38w75dqzsamynp8xny6hzb75vn1207hq7z5km8lb9c"; depends=[Biobase fabia]; }; + hca = derive2 { name="hca"; version="1.6.0"; sha256="1z20rlyc4920hdx0npqhbpmplawlwz8d5gyy5rf95g84d6klxs7c"; depends=[BiocFileCache digest dplyr DT httr jsonlite miniUI readr shiny tibble tidyr]; }; + heatmaps = derive2 { name="heatmaps"; version="1.22.0"; sha256="01jvfjfh3ji0f6wf3xwmz0abpm23x1aan7dw0nycm5cm0bxjwgh4"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; + hermes = derive2 { name="hermes"; version="1.2.0"; sha256="1akh46jvhl63lva8jfpqzckczvdw0yjpkw5c0qnvgxl3sajvbw0n"; depends=[assertthat Biobase BiocGenerics biomaRt checkmate circlize ComplexHeatmap DESeq2 dplyr edgeR EnvStats forcats GenomicRanges ggfortify ggplot2 ggrepel IRanges lifecycle limma magrittr matrixStats MultiAssayExperiment purrr R6 Rdpack rlang S4Vectors SummarizedExperiment tidyr]; }; + hiAnnotator = derive2 { name="hiAnnotator"; version="1.32.0"; sha256="05l07ycm72i2qv7wlbssk1wh3ly961x444hwbpaii8fm65x5a0k2"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; + hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.34.0"; sha256="00m0vkdb552nw0yn6wx01wdvf6g8i33q0wl4ishscmvcwld803vj"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; + hierGWAS = derive2 { name="hierGWAS"; version="1.28.0"; sha256="04jbrin7jyj72bfxp3rgmmr796gy2v3mvnb593w9ldq5620az20b"; depends=[fastcluster fmsb glmnet]; }; + hierinf = derive2 { name="hierinf"; version="1.16.0"; sha256="0f8m0wbghwjlavkj4r089z7xix27jnc57d0sddw4hamv9hi6zm95"; depends=[fmsb glmnet]; }; + hipathia = derive2 { name="hipathia"; version="2.14.0"; sha256="0ghav95b2cv0y61m14yq332yzrjhipm01dnc9qvb9zqdnwwqhdj1"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; + hmdbQuery = derive2 { name="hmdbQuery"; version="1.18.0"; sha256="12q6cr8fwl298vd2v3cdzm6cjkmwfssn4h1cy3f7ky1n7dkpnw30"; depends=[S4Vectors XML]; }; + hopach = derive2 { name="hopach"; version="2.58.0"; sha256="06qpg76d8ycpgvxfblz4va7i2f705rv3bi19c2lw84vnkmhzdcf6"; depends=[Biobase BiocGenerics cluster]; }; + hpar = derive2 { name="hpar"; version="1.40.0"; sha256="1dls59d2ysk8ngk5c6nx7xqgc2iygbdlzf88gccf2wm8zhy8m3f4"; depends=[]; }; + hummingbird = derive2 { name="hummingbird"; version="1.8.0"; sha256="1glnxhqvdxb1n8xk3pjh68nyg5vqvxszd7q24qir380x8d9ncrpg"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; + hypeR = derive2 { name="hypeR"; version="1.14.0"; sha256="0vni4s1rvdjm4l5jaa2kq0i1z87jw09vd1pw63aa0v6qk1vr96vc"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; + hyperdraw = derive2 { name="hyperdraw"; version="1.50.0"; sha256="1fl4ia2jskvmbwk0y1wd0x4dgqph0av7bx2zffrvd1a5ppcjmsra"; depends=[graph hypergraph Rgraphviz]; }; + hypergraph = derive2 { name="hypergraph"; version="1.70.0"; sha256="1jvnvzjivjwqxh19c3g37kpyl6i6mxw99ma3ypjjgxzx898nsg45"; depends=[graph]; }; + iASeq = derive2 { name="iASeq"; version="1.42.0"; sha256="1v7ax7847ygdy6mxwbg6awy52dms0nirbyn1z0cwsjssvi4q4hd5"; depends=[]; }; + iBBiG = derive2 { name="iBBiG"; version="1.42.0"; sha256="0yhvp522s23y6239v340ilbyaii5qfj7vc76x0j6c56yd807zmhb"; depends=[ade4 biclust xtable]; }; + iBMQ = derive2 { name="iBMQ"; version="1.38.0"; sha256="1k08dslcyfyzyb9zn1r0ddnvrrp2370n4w3762xz1zdsfs7h551k"; depends=[Biobase ggplot2]; }; + iCARE = derive2 { name="iCARE"; version="1.26.0"; sha256="1x47wy0spsfv58b96ys2ym0f3ivs6b68a2h82wyp5viyq7imphbn"; depends=[gtools Hmisc plotrix]; }; + iCNV = derive2 { name="iCNV"; version="1.18.0"; sha256="1j1cvk42l9p2r6n6zhijw26ydwki6fpj8d70592mqhv9m38ms9i3"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; + iCOBRA = derive2 { name="iCOBRA"; version="1.26.0"; sha256="0mh7arn5rv26picz05ywil5ynras91xv6diwh47s9ip75vp9s3cy"; depends=[dplyr DT ggplot2 limma markdown reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; + iCheck = derive2 { name="iCheck"; version="1.28.0"; sha256="0aa76j1vlrhyfppqa91dfzrh5ljxx7zylycrmjy35hx0ja0zck00"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; + iChip = derive2 { name="iChip"; version="1.52.0"; sha256="1c3l24v0hm2dnidg8l9v6gqwrm51pqhw3mjg4x1a4vy1rq3j6jrj"; depends=[limma]; }; + iClusterPlus = derive2 { name="iClusterPlus"; version="1.34.1"; sha256="0k0vl7ddkpdv9y8whkv512jc7a4wxyi00jf393bjdppgjj4yk79s"; depends=[]; }; + iGC = derive2 { name="iGC"; version="1.28.0"; sha256="1knvx7b4h85ldqxq3a54fm05axb8zcvqm5by98wsdz4h6dzikxjh"; depends=[data_table plyr]; }; + iPAC = derive2 { name="iPAC"; version="1.42.0"; sha256="0dsmjqipj871ygjzc8js5xvy5xpfj22853c4a3wdf2qhriw1c0ms"; depends=[Biostrings gdata multtest scatterplot3d]; }; + iPath = derive2 { name="iPath"; version="1.4.0"; sha256="0df426fjw00wawl5an91l59i6k811pi9069ayxv6ysq4vhjk4dwq"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; + iSEE = derive2 { name="iSEE"; version="2.10.0"; sha256="1l2bwqk7ivj79xxjzc0hc3x5v5h19zpk9pa0vbpb5p64z1pshnjn"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; + iSEEhex = derive2 { name="iSEEhex"; version="1.0.0"; sha256="06n9ls71rg2kilr3kjlwwk5rnj8v68svjmzcr2hg0gwwyaxcyk9w"; depends=[ggplot2 hexbin iSEE shiny SummarizedExperiment]; }; + iSEEhub = derive2 { name="iSEEhub"; version="1.0.0"; sha256="1ggkm7931axcl0464h0d5cnf5lbd6nx3fbac1zrlkwyb2lym7wi8"; depends=[AnnotationHub BiocManager DT ExperimentHub iSEE rintrojs S4Vectors shiny shinydashboard shinyjs SingleCellExperiment SummarizedExperiment]; }; + iSEEu = derive2 { name="iSEEu"; version="1.10.0"; sha256="0040k9p1bmlg2065s3a124qvx5qgqqs4kgbkkz0k9vsdvr3z87zs"; depends=[colourpicker DT ggplot2 IRanges iSEE iSEEhex S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; + iSeq = derive2 { name="iSeq"; version="1.50.0"; sha256="1h0da0298g2lvvqbys3jh2acjjzh1dvivfpl07g319nafxkfsi1q"; depends=[]; }; + iasva = derive2 { name="iasva"; version="1.16.0"; sha256="192cpnpyyjf16pqnzj70nsqkzv6wp4acia7fciz1zvz5jhncrsva"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; + ibh = derive2 { name="ibh"; version="1.46.0"; sha256="0kxqpb9711yxg5xz2mhpwjw9nwixmfzzy6qql1sifi4mp6bh2fzf"; depends=[simpIntLists]; }; + icetea = derive2 { name="icetea"; version="1.16.0"; sha256="03v3ymmzj8dbpayjjpxm3cm8c2ysyd2p7yq0hp7lmv8pyq9x05xy"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; + ideal = derive2 { name="ideal"; version="1.22.0"; sha256="19byvmqv5bx2s4jsjr317xwpd96miz83gdamw9xx1byzka6wz29m"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; + idiogram = derive2 { name="idiogram"; version="1.74.0"; sha256="094n43lv6v1l1hcrfvgyx8a5dp7sk154f25dwrxb0b2k4g2kxdn0"; depends=[annotate Biobase plotrix]; }; + idpr = derive2 { name="idpr"; version="1.8.0"; sha256="06apnwy114hbjmfvyc47zajchhi9l7zmnxbdqx13d9gazj2sigbf"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; + idr2d = derive2 { name="idr2d"; version="1.12.0"; sha256="1qrrjb67wymak2nl8jisjv5xrp3sjmyx19rr7wrp7ffh84y8dm1b"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; + igvR = derive2 { name="igvR"; version="1.18.0"; sha256="06rnq6miqy5s4fcmlblwsvl0limynsr73s2lzbxd4dly7ypp4d32"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv httr RColorBrewer rtracklayer VariantAnnotation]; }; + illuminaio = derive2 { name="illuminaio"; version="0.40.0"; sha256="1cw526mbhh0czkwk99qnr6hfwi4k4xi2bm5p14kw9sr00if59x12"; depends=[base64]; }; + imageHTS = derive2 { name="imageHTS"; version="1.48.0"; sha256="124pksw08b88bj7l8pckzvgk6sf54d633cnbq2r5il7a09i4caim"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; + imcRtools = derive2 { name="imcRtools"; version="1.4.2"; sha256="0d3gcqq1jc7h9mvhvmyf5b524pyd9cqnwx2ci2y75l81jqyqb0hb"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table distances dplyr DT EBImage ggplot2 ggraph igraph magrittr MatrixGenerics pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph tidyselect viridis vroom]; }; + immunoClust = derive2 { name="immunoClust"; version="1.30.0"; sha256="0isqbgg5bmxlcw4nhhsz2dgpzhjkyz690kgj4qbrx00k0xq1wkn4"; depends=[flowCore lattice]; }; + immunotation = derive2 { name="immunotation"; version="1.5.0"; sha256="09fahcn8jcf7xdjhqjiaphnkn8v303ancb0ixc03frhqk1k8srqv"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; + impute = derive2 { name="impute"; version="1.72.1"; sha256="0862mpbmznizcq5bgnp85dl9q0bip76jkga45gssdrv90wsi2192"; depends=[]; }; + infercnv = derive2 { name="infercnv"; version="1.14.0"; sha256="11hgw6c67gd3ih5q14a520sjmnlv56qw19z0i6s5pz2slmgflpry"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov igraph Matrix parallelDist phyclust RANN RColorBrewer reshape2 rjags Seurat SingleCellExperiment SummarizedExperiment tidyr]; }; + infinityFlow = derive2 { name="infinityFlow"; version="1.8.0"; sha256="03kmx5hsqzcjc1vw84ylnahq8ys42lanbir7a20lrhb3r7380swa"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; + intansv = derive2 { name="intansv"; version="1.38.0"; sha256="15nrx15jpm4dpv249vxvgkvz2hh8980hqlr3vv4m24a2gcrn6sn1"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; + interacCircos = derive2 { name="interacCircos"; version="1.8.0"; sha256="0yx7am1w9facdj7i1kcrhh65saq2bll7q6vh0i39dhw6fwciih17"; depends=[htmlwidgets plyr RColorBrewer]; }; + interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.36.0"; sha256="0zh6l2qdl4hvplc3d1p6y0fvr5wv7nijagj4laf2jb0y2jrs8c00"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; + interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.36.0"; sha256="1j2cz929q9hwkchnzcs3mnbmhg68mm06r9bgylnbll4j5ibqicrz"; depends=[BiocGenerics DT shiny]; }; + ipdDb = derive2 { name="ipdDb"; version="1.16.0"; sha256="0kza7156a4b79jswxwj7knc4sgknpv9sm4l41lgjrzzm0vipczn0"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; + isobar = derive2 { name="isobar"; version="1.44.0"; sha256="1p9kwkj0yr8in4hxhvy85wvgf5zc9m57b8skgwb2331fmbq8iipn"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.26.0"; sha256="0ybnr5y3ji3v7b7wn6762v92xvy6y6zl0vq4z8mz6mnqr3245zc6"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + iterClust = derive2 { name="iterClust"; version="1.20.0"; sha256="1rdn88c65ybalr6sv7vlcmw3272l59gvnrv8xc81phlszzv1nqd5"; depends=[Biobase cluster]; }; + iterativeBMA = derive2 { name="iterativeBMA"; version="1.56.0"; sha256="0pplkj731v94aq9jkwcxcr5ddd88qssnvl8r03vwll3c003pp3yk"; depends=[Biobase BMA leaps]; }; + iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.56.0"; sha256="02zcwrb9kj9q444rg3qqsms80qapxfx9mpwam6gbbz6ziqp3pzcb"; depends=[BMA leaps survival]; }; + ivygapSE = derive2 { name="ivygapSE"; version="1.20.0"; sha256="0axxj9i83djpms8xhgw2ishac1p9866v4dbsy9fgs3plym7jzm8g"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; + karyoploteR = derive2 { name="karyoploteR"; version="1.24.0"; sha256="1dcxq3651903wwzr7bww8c4wd8h5h7rklnqfgklqpss0psx59d2w"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + katdetectr = derive2 { name="katdetectr"; version="1.0.0"; sha256="15mbn0n2g58jfmvwaczd34fhhd1bj9sd7kd9bnvb0y89i8f7k1d7"; depends=[Biobase BiocParallel BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 changepoint changepoint_np checkmate dplyr GenomeInfoDb GenomicRanges ggplot2 ggtext IRanges maftools plyranges Rdpack rlang S4Vectors tibble tidyr VariantAnnotation]; }; + kebabs = derive2 { name="kebabs"; version="1.32.0"; sha256="0cry6mb4k128afl7r2jld1g7nl12qvihn59j7867v4k70ia33lxz"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; + keggorthology = derive2 { name="keggorthology"; version="2.50.0"; sha256="1znc7lw6dh5yb94fcx46l2lvbnxki0pilcamzmjc5x8r2bhvjrrr"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; + kissDE = derive2 { name="kissDE"; version="1.18.0"; sha256="0yrpz3sq6acx2200malb05b4wcw4p1vf8wlyc3dgswnqi61wgpnl"; depends=[ade4 aods3 Biobase DESeq2 doParallel DSS DT factoextra foreach ggplot2 gplots matrixStats shiny shinycssloaders]; }; + lapmix = derive2 { name="lapmix"; version="1.64.0"; sha256="0rhdzvbhsvnhlqd1bkbi9p8fqpc0lvm6jw4923dlmv68lxlfy9sb"; depends=[Biobase]; }; + ldblock = derive2 { name="ldblock"; version="1.28.0"; sha256="0i8v4wfp207f5dpf3y2n8fqn7mc4khj92gb209vzc3y3kbwp2c6n"; depends=[BiocGenerics httr Matrix rlang]; }; + lefser = derive2 { name="lefser"; version="1.8.0"; sha256="07bymf3gzb74d8m9ddsz1vjdg1f1a1j41nqpn6iz7mqkf83dh46c"; depends=[coin ggplot2 MASS SummarizedExperiment]; }; + les = derive2 { name="les"; version="1.48.0"; sha256="0rsg0q437sm33byg3ksvckmparym9k168vm9jicf0q92g4cq146m"; depends=[boot fdrtool gplots RColorBrewer]; }; + levi = derive2 { name="levi"; version="1.16.0"; sha256="13adc39arg071hjw84lawr8rabfz1v7c6cjcbidsw6mz470x0v8h"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; + lfa = derive2 { name="lfa"; version="1.28.0"; sha256="1l3ip0bsvbz9nagzv47qjh5hf7qf8ffk4hlnkwagngiwyq84vyp1"; depends=[corpcor]; }; + limma = derive2 { name="limma"; version="3.54.0"; sha256="1jy75nbkhl0kgv4gw88acx58r9f1kywrd36405x6g05xy05bprma"; depends=[]; }; + limmaGUI = derive2 { name="limmaGUI"; version="1.74.0"; sha256="0ff4k88szb4bfjgcflq9jls4wlchw0izr0ibjb8hrmz877w6370f"; depends=[limma R2HTML tkrplot xtable]; }; + lineagespot = derive2 { name="lineagespot"; version="1.2.0"; sha256="13h6xxdmsgb6gxqdwzr544758y8plsm934rk81p1fzw94xs4hk1d"; depends=[data_table httr MatrixGenerics stringr SummarizedExperiment VariantAnnotation]; }; + lionessR = derive2 { name="lionessR"; version="1.12.0"; sha256="1gih08dd35rmmynwwr86szfb5ygcsf1jh077nsf048x6xfaq4wp1"; depends=[S4Vectors SummarizedExperiment]; }; + lipidr = derive2 { name="lipidr"; version="2.12.0"; sha256="1kr7s5lq8l25c7c1qarpj879l2l93bc9677yjkb0xgwi8h8zkwnn"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; + lisaClust = derive2 { name="lisaClust"; version="1.6.1"; sha256="1p0q6bfkw53qhqw9zqh1avcw0yf3pskqr0iqzcyhwq4vnf59clw2"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 pheatmap purrr S4Vectors SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom spicyR SummarizedExperiment tidyr]; }; + lmdme = derive2 { name="lmdme"; version="1.40.0"; sha256="13nyndbmxmyyrs84fpgnak6zxikrhzbmkaykiffr7khpknszx388"; depends=[limma pls stemHypoxia]; }; + loci2path = derive2 { name="loci2path"; version="1.18.0"; sha256="1l9mv3cg08wqi81m4clz3y7yr4l38s44s384gl2hcw64xp55ar3g"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; + logicFS = derive2 { name="logicFS"; version="2.18.0"; sha256="17sy0bkcwxqlxrl44i5ncf203ds5a25d6p23vkkj64fiszkyq8p0"; depends=[LogicReg mcbiopi survival]; }; + logitT = derive2 { name="logitT"; version="1.56.0"; sha256="1mi2psbmz1cd5ms084wpljiv8kh1fdpwkaasj1j4axcw5wds7bqd"; depends=[affy]; }; + lpNet = derive2 { name="lpNet"; version="2.30.0"; sha256="148kvxav3mqxa7z6m8wp8qxlv1w7ladw7za1d7qaly7hbpll21yy"; depends=[lpSolve]; }; + lpsymphony = derive2 { name="lpsymphony"; version="1.26.1"; sha256="02lyi2ijzd204rnd4xm3jh3d2a7d634abivjz3p7l5in8phx1mpw"; depends=[]; }; + lumi = derive2 { name="lumi"; version="2.50.0"; sha256="1091458is69dxnjrcd11czqy55c68sdnkrmpvlm6hw2cbghs2bjq"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; + m6Aboost = derive2 { name="m6Aboost"; version="1.4.0"; sha256="093fz8yh5hd478q4hvgmpi5kbjbh820mmjvx108n2lic6pp3j285"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; + mAPKL = derive2 { name="mAPKL"; version="1.28.0"; sha256="0nj2r54djps19lar2sp6bhdi5nkid195xyaqzzam2r7piwr8xv8s"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; + mBPCR = derive2 { name="mBPCR"; version="1.52.0"; sha256="18nzcglzh97g7hxbphn0gl1k8q1fp0055djrw10vq9rxc5sqx9s0"; depends=[Biobase GWASTools oligoClasses]; }; + mCSEA = derive2 { name="mCSEA"; version="1.18.0"; sha256="1j5kyjm2llwqvf63ah65hjci56xhjhsvjw77ra9k6fiyz7phfli2"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; + maCorrPlot = derive2 { name="maCorrPlot"; version="1.68.0"; sha256="07z6amr19dg2i5zvz86xs7f5nk82b5qj9slv69r9pbiifn6pci9d"; depends=[lattice]; }; + maPredictDSC = derive2 { name="maPredictDSC"; version="1.36.0"; sha256="0kbpckkm29x6n29a4jgb3l7bip5smrkl2jrqv5iix8d6lm21pq1s"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; + maSigPro = derive2 { name="maSigPro"; version="1.70.0"; sha256="048h2n50fjr1sxm6ls4d7g5jwhdlb65admnvwvdrzhs788vi0hx0"; depends=[Biobase MASS mclust venn]; }; + maanova = derive2 { name="maanova"; version="1.68.0"; sha256="0i2nx81m8q4561w240i36cg80l0x2ag0ivz1qw6anj6z4rbxx7ih"; depends=[Biobase]; }; + macat = derive2 { name="macat"; version="1.72.0"; sha256="11sjkk5d0r9fhxjmv4m078dyy4zb7nn7zbasn7fa16g37xyhrbb6"; depends=[annotate Biobase]; }; + made4 = derive2 { name="made4"; version="1.72.0"; sha256="0ylcigzbahic99afqk1q29d4wczmsqmp2hasvihcykybb440a6f2"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; + maftools = derive2 { name="maftools"; version="2.14.0"; sha256="1f1r0frikaj6aw137dk523gagkxdygg7gzc3pd303ds5cqynwiqx"; depends=[data_table DNAcopy RColorBrewer Rhtslib survival zlibbioc]; }; + magrene = derive2 { name="magrene"; version="1.0.0"; sha256="1r7pri63lwr7hkqn2wkz782sgnx1v7z0fkd5x6yim141hm1y9xii"; depends=[BiocParallel]; }; + maigesPack = derive2 { name="maigesPack"; version="1.62.0"; sha256="0bl6g2aqyq1yh6v42y8jyqxz6lprkizaxm423ll5cmmw77lh82x0"; depends=[convert graph limma marray]; }; + makecdfenv = derive2 { name="makecdfenv"; version="1.74.0"; sha256="0bvj5dg6yfjnhga1z8788zmb98d8shyz8pzz0ggnml87c1p2gy25"; depends=[affy affyio Biobase zlibbioc]; }; + mapscape = derive2 { name="mapscape"; version="1.22.0"; sha256="0an5ylv1pjgqfaj8ic35l1f4bp12lbr1h7rx2n0qwgms2wkc80zg"; depends=[base64enc htmlwidgets jsonlite stringr]; }; + marr = derive2 { name="marr"; version="1.8.0"; sha256="1v1mpqvhivirsy1f6zhb0n69zjvad5saw892psh8v5n8nyywi0kr"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + marray = derive2 { name="marray"; version="1.76.0"; sha256="1bad4cjxv22h6vxxn86mxp7xvxhhzj81pikxq3h3hc2a858qfkgs"; depends=[limma]; }; + martini = derive2 { name="martini"; version="1.18.0"; sha256="0ix29f7qx3lxg338jb5sc6kdil4cpd6i9a77n4zjk87n8xp6dhbs"; depends=[igraph Matrix Rcpp RcppEigen snpStats]; }; + maser = derive2 { name="maser"; version="1.16.0"; sha256="1zycx8s046g4d3w5qrn950bmi0nrnq1g7fvqji48mr6hmsyzplvv"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; + maskBAD = derive2 { name="maskBAD"; version="1.42.0"; sha256="0mp0wcpki7nh0i5vgzv9fvqmxwb2bn9rjszk4swg4zhgh37iids5"; depends=[affy gcrma]; }; + massiR = derive2 { name="massiR"; version="1.34.0"; sha256="1dxhp4pykq9ghqsnm1ylz3j3rvyglkjpbam9ngcsqa2jj0jh5cym"; depends=[Biobase cluster diptest gplots]; }; + matchBox = derive2 { name="matchBox"; version="1.40.0"; sha256="0s7pmrbbzy87xf2596m6ix14p02dfr8db0jgx5vzidfvplh7rwsx"; depends=[]; }; + matter = derive2 { name="matter"; version="2.0.1"; sha256="0vbc6fj3is3iv2w5fdd2vdw6lr6kz3fq5d4mpg3skfcnndnb7l2j"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; + mbOmic = derive2 { name="mbOmic"; version="1.2.0"; sha256="01zn60gqbzq3c4nzfdk2dhj515qlill9cs5n8lba9553j0sg739q"; depends=[cluster clusterSim data_table doParallel igraph psych visNetwork WGCNA]; }; + mbkmeans = derive2 { name="mbkmeans"; version="1.14.0"; sha256="1ghv2j88p3sppqph3wxpm8z84nw7bi4idkn11wf806d8h1krfjm7"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; + mdp = derive2 { name="mdp"; version="1.18.0"; sha256="0z7d08kzqxabmd1anqa8k5rljz0mhwy1wzk5cghr770492ax9yap"; depends=[ggplot2 gridExtra]; }; + mdqc = derive2 { name="mdqc"; version="1.60.0"; sha256="1hn6m0z8q3jnzb0h8m29khgm0cx81cfs3s1j6hlg4wsrwkha1i3w"; depends=[cluster MASS]; }; + megadepth = derive2 { name="megadepth"; version="1.8.0"; sha256="1krk5iqqzkkkxfgsvi9j6mj14i2rzisrrq0xmxjsrkgfh19awhr8"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; + memes = derive2 { name="memes"; version="1.6.0"; sha256="0480pq3n99r6h7gvhw30j4ql259q8jq88lzjb6ik69g5xlgdrg68"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; + meshes = derive2 { name="meshes"; version="1.24.0"; sha256="1qdzjyh6jj8jr74xjpqdfyak0alx6n7bi3zp0sjblmlzd5mydk53"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; + meshr = derive2 { name="meshr"; version="2.4.0"; sha256="14kdb9wa99pb9jbsnhz86a5ajp6vwaqkkkj3x63ng0wl4pyh90lx"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; + messina = derive2 { name="messina"; version="1.34.0"; sha256="1pa8xl98xzadzh2q8y4j446947lapxyz2aijx8xp3dv62i5cbv0p"; depends=[foreach ggplot2 plyr Rcpp survival]; }; + metaCCA = derive2 { name="metaCCA"; version="1.26.0"; sha256="1jvzp9fzggvavg4jbmmyb6cibgll0yglmc3nsfgygsh7z20yss36"; depends=[]; }; + metaMS = derive2 { name="metaMS"; version="1.34.0"; sha256="113w3zk32xg0f8ik09w8wl5zr02wmfkp05nqgp8615j7kqrnr91d"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; + metaSeq = derive2 { name="metaSeq"; version="1.38.0"; sha256="0bfsmsy1zpzrmah6y52yb3g2qy8c30s74l9w98rrisq0jfhldvdp"; depends=[NOISeq Rcpp snow]; }; + metabCombiner = derive2 { name="metabCombiner"; version="1.8.0"; sha256="1s9vccbd2abaz2dsg7gm0amdvwb5iildz0pavfhhssl0np07h9rf"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; + metabinR = derive2 { name="metabinR"; version="1.0.0"; sha256="1qyy2l5y18v1jg54lk7sv9f1wcmrzbff4yk921m9gn4jcxdn59l9"; depends=[rJava]; }; + metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.8.0"; sha256="02azijq6hq4141zh8nls1xg5h1hlgyb130b6l47966pn1drm5q9l"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; + metabomxtr = derive2 { name="metabomxtr"; version="1.32.0"; sha256="0b01h0dd1hnlnx89i347rca032lk48d49xfb03r15di1gcwwrw5q"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; + metagene = derive2 { name="metagene"; version="2.30.0"; sha256="09z4hgcp7lnybv4hq2dybc8zq6mwndls7p8y30lzb6rw2fryhkhq"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats purrr R6 Rsamtools rtracklayer stringr]; }; + metagene2 = derive2 { name="metagene2"; version="1.14.0"; sha256="12knh4bri4j5sf12wf129kg484xbc37hkfkyw39rkz2arx465giw"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.40.0"; sha256="01wjw4kcm8ysa5sn3cqg4a9i5pyksnwmbdqp5fr6n2l9hllkc9jy"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; + metahdep = derive2 { name="metahdep"; version="1.56.0"; sha256="1fyphlk6v5va7yr7ihb4yman0sd3jywscqx6an6zv1jkwvp9hpd1"; depends=[]; }; + metapod = derive2 { name="metapod"; version="1.6.0"; sha256="06ala1qz9bfq7nnj92m0c5r85kk7h4zrljjh0hgrap5sjlsm09bb"; depends=[Rcpp]; }; + metapone = derive2 { name="metapone"; version="1.4.0"; sha256="13fnh1n2ydykkvpj9s9xvikfgahsi827rmwzb4zyk9h2g4dx5jk2"; depends=[BiocParallel fdrtool fgsea fields ggplot2 ggrepel markdown]; }; + metaseqR2 = derive2 { name="metaseqR2"; version="1.10.0"; sha256="0m5dyg0gsvif02mgz0mcdk8annmqy4a6s5ldk3d9hjjzcgchpkpv"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; + metavizr = derive2 { name="metavizr"; version="1.21.0"; sha256="1d88f854sn5m2pklsyvkmq05yzjanxlnkz5gpzban62qq1mpvims"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; + methInheritSim = derive2 { name="methInheritSim"; version="1.20.0"; sha256="1mkh8j1kccc95r1xj77hkpal0zdj0g923p8xr7vm1rxz98fpw30n"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; + methimpute = derive2 { name="methimpute"; version="1.20.0"; sha256="0pksjz8i42wvg830rlwyfk5wv0mymnxpv65swjgbkxhd1hx0s1nf"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; + methrix = derive2 { name="methrix"; version="1.12.0"; sha256="08p6zq9pbqa21awgm7qfxwb81600i9c1af536zwp4a8fqn7vphhs"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; }; + methylCC = derive2 { name="methylCC"; version="1.12.0"; sha256="0m0zs1nj2xmslfj35khmyy5nzrq49q5mpyv9ymq07wja54qpxx5l"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; + methylGSA = derive2 { name="methylGSA"; version="1.16.0"; sha256="1xzgv5r62pbn9y7bc2rih5073n4qzx9fhkvja2pr0irlx2jr4arm"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; + methylInheritance = derive2 { name="methylInheritance"; version="1.22.0"; sha256="0rf6gw8b4v20q9lhzgxskyxga9iszfgdvgdhs53x0xkfa2sagddr"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; + methylKit = derive2 { name="methylKit"; version="1.24.0"; sha256="0w6wv8x1jggbvymb07b2z47myf239mwpwbgz5p5yi60qb0k7p2q9"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; + methylMnM = derive2 { name="methylMnM"; version="1.36.0"; sha256="0mj34ch1k216k42qj9wyf5yshl1qjb6hvpxs5y2rk21w6dwziklk"; depends=[edgeR statmod]; }; + methylPipe = derive2 { name="methylPipe"; version="1.32.0"; sha256="1za6f3y5mfgk8pfsv487q1xbigrv85vs0q1j71zcbc3lminsfzyp"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; + methylSig = derive2 { name="methylSig"; version="1.10.0"; sha256="1yg9lkgqgdlb5d8wiprnilw4nmwgq1nsz2p8v5zm09sfyvkl05gx"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + methylclock = derive2 { name="methylclock"; version="1.4.0"; sha256="0pzpxdm3z6payp5mh45a939zk4kqg08rkm4c96ryd2j7a4yvk55q"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr gridExtra impute methylclockData minfi PerformanceAnalytics planet preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; + methylscaper = derive2 { name="methylscaper"; version="1.6.0"; sha256="08lrc54safmb9ygg4vpqjfn5ycps19j7gbgi3rjcjzc7qv6zgjwp"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; + methylumi = derive2 { name="methylumi"; version="2.44.0"; sha256="07kfyv3kkayzh0akxfl3p9gckw8qiplkxbyxw8npc7cb03ihgmc4"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; + mfa = derive2 { name="mfa"; version="1.20.0"; sha256="0xrgl1nzyvwm34249ijw0ld4dkz0001ck8cv780yx2dk92lp9ky2"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; + mgsa = derive2 { name="mgsa"; version="1.46.0"; sha256="1h559i80hd8ajvimj3qs9c2yayl4cz8kr7irn4184wcql61dq5md"; depends=[gplots]; }; + miQC = derive2 { name="miQC"; version="1.6.0"; sha256="1fy4iqm5frmnrlmcpikhrvr59hv2cbsrgrn6xkcq9jxcwnm7zxnz"; depends=[flexmix ggplot2 SingleCellExperiment]; }; + miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.22.0"; sha256="1srx066gsqcngngjpac29wnqf4n5r297h5wbbgjdvkkvyc7fhvwy"; depends=[]; }; + miRLAB = derive2 { name="miRLAB"; version="1.28.0"; sha256="1fj8vgwym7w65z84w043v75j0cn6nb882sk91mdmp1q0xwmn4jq0"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; + miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.26.0"; sha256="0wvz9gz7zh5qzf146hz788rc289mb22bi78ffjh8xmyfhc3jxmpj"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; + miRNApath = derive2 { name="miRNApath"; version="1.58.0"; sha256="0h6q3p29pvzfk8ggb97akbh0lmawypwp9rs4bmnj52599ws4x3n1"; depends=[]; }; + miRNAtap = derive2 { name="miRNAtap"; version="1.32.0"; sha256="05pxcqaw7hkfchmy8m6ywrblh3kj2zwargrw1v969af24lgaa3fa"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; + miRSM = derive2 { name="miRSM"; version="1.16.0"; sha256="153bdgwkqkcidvracjwxa249j6nl2fbsdg9wabnjd67qph8sa8rn"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; + miRcomp = derive2 { name="miRcomp"; version="1.28.0"; sha256="1xnw6gv6h0b7fzmcirwdkp6hn33wc8k1dify5xy6r17sgfy51xm9"; depends=[Biobase KernSmooth miRcompData]; }; + miRmine = derive2 { name="miRmine"; version="1.20.0"; sha256="1mn9cjx6hqgqsmjg3rjkdyfs0d4ji12k5s2mw2rc87bwcl3d0rai"; depends=[SummarizedExperiment]; }; + miRspongeR = derive2 { name="miRspongeR"; version="2.2.0"; sha256="0nm4zzwpl4xzrc2v3br7963w2mfmlsg32pr4j4qqf090gjqj2k3k"; depends=[clusterProfiler corpcor doParallel DOSE foreach igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA SPONGE survival]; }; + mia = derive2 { name="mia"; version="1.6.0"; sha256="0yz88ggv6d5rccdwzixwg9y1bc4xysazlmv1ph88wxs8r6fcmync"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; + miaSim = derive2 { name="miaSim"; version="1.4.0"; sha256="01rvvjm6q1b7pdi89jvlhiqv70rms128f08frhvfxj6m4wr432hj"; depends=[deSolve gtools MatrixGenerics poweRlaw S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; + miaViz = derive2 { name="miaViz"; version="1.6.0"; sha256="18gp77islzfy1ll7yxk3l8l1q8kj4hxj0qns6mk9i0pb1vqs1lk7"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; + microRNA = derive2 { name="microRNA"; version="1.56.0"; sha256="002wagng2zqa2cl8140im2fzbic6mqr2mp6qbaqk5ary5m8c0bkq"; depends=[Biostrings]; }; + microbiome = derive2 { name="microbiome"; version="1.20.0"; sha256="1j3lrrz6yxfzsr037c0bbdhrs0ll7jg0mpcvk3iqdryi5rysnx0x"; depends=[Biostrings compositions dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; + microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.12.0"; sha256="0gfldxhrz70drr9g4g1bpk0ncazldyc32z9by0ri881hyqah3d9x"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; + microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.8.0"; sha256="1y9n12vmqr1l7c33smfl0wm33nzww84593y6azbhyj0sl50gk4a2"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; + microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.4.0"; sha256="022hzblxs2b3vlj3d9xicqyap8gr5r0dk29wz2n09d759aawc0nr"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics BiocParallel biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC pROC purrr rlang S4Vectors tibble tidyr tidytree vegan yaml]; }; + midasHLA = derive2 { name="midasHLA"; version="1.6.0"; sha256="0j4sw8vbkksgm4g2wlzyanvmin7izv7209kqk3nnyx1g2crgh5ki"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; + miloR = derive2 { name="miloR"; version="1.6.0"; sha256="07p9rs1jmgxqaahjbrnvvs94c142n2qfw8ip3qqkr6mhzwr19ly3"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + mimager = derive2 { name="mimager"; version="1.22.0"; sha256="1q11i2k78nk8nga0sy4zps86i5n650km8v9h4yz12k12akwwp156"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; + mina = derive2 { name="mina"; version="1.6.0"; sha256="0w2m191lxy34c22qbds00g4advczzic4rvq6g78lmbpmf8xzj5sx"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; + minet = derive2 { name="minet"; version="3.56.0"; sha256="1xknyc2m03dyqrnx6np2y2lr41w06arl114f6cncl6wsnanqxzrz"; depends=[infotheo]; }; + minfi = derive2 { name="minfi"; version="1.44.0"; sha256="15989zilgy2j4k4nw046qg8wli7ynjh2b1yzfv7cwgn87mp618lc"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; + mirIntegrator = derive2 { name="mirIntegrator"; version="1.28.0"; sha256="0662jsrw745973kf3f95l3n6i5s9h2nk2ap6alv8sb5rkykva2in"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; + mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.6.0"; sha256="07lfh8c7ks9lbnskvqjhjrssp0wk1kpp7mbh7c7cg6q1kxcxpqyx"; depends=[assertthat caTools corrplot data_table dplyr ggplot2 MASS pheatmap pscl purrr R_utils reshape2]; }; + missMethyl = derive2 { name="missMethyl"; version="1.32.0"; sha256="10r3yvamkd1h291lmbas66mshrmy7djkz6pldh8lpqngm0rpgdr6"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; + missRows = derive2 { name="missRows"; version="1.18.0"; sha256="0kwbmhz80an07fcp6skv4bik0ncszxcllfi7jv9h0k814qciij0y"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; + mistyR = derive2 { name="mistyR"; version="1.6.0"; sha256="1fyzxswad1naa86647szqwsf0m929l3l3c00v5y28cpfz20qzlr5"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 purrr R_utils ranger readr ridge rlang rlist stringr tibble tidyr tidyselect withr]; }; + mitch = derive2 { name="mitch"; version="1.10.0"; sha256="174hiq8xzbvdkfxdgm742sjs7qcmnkb9shcid1p8x8ci6fk9vs61"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; }; + mitoClone2 = derive2 { name="mitoClone2"; version="1.4.0"; sha256="07yi1pz05na7w4ppp0kcrylny4p1ca9w1rxwmph70i81paf5kpfn"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; + mixOmics = derive2 { name="mixOmics"; version="6.22.0"; sha256="0w6shihvnvkjycba1hy8drd8wcxxcl2rimkrb4vdl8aygdifrarx"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; + mnem = derive2 { name="mnem"; version="1.14.0"; sha256="1midn7hqi037fwk3pxrzlc0a7fgs0ylxpd312ghjb45g1anxdc0s"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; + moanin = derive2 { name="moanin"; version="1.6.0"; sha256="0cj9ym1iw4xpc9nmswhv9pnd2yr5mqmjzs43y7dd0c6x5nq90l13"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; + mogsa = derive2 { name="mogsa"; version="1.32.0"; sha256="1qr8ncs2993pz80idbz2paappn0pw0akjv25zkqc084bm74q0qb9"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; + monaLisa = derive2 { name="monaLisa"; version="1.4.0"; sha256="1hljdgb7cjhcjvjl4ffwjsn0har7p7rhg07320575s738pzm3wj3"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; + monocle = derive2 { name="monocle"; version="2.26.0"; sha256="1d3xgh9xgqa28bgyd06zkjmg75lq7hdah3d140l1bqq2ii1bv62g"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba leidenbase limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; + mosaics = derive2 { name="mosaics"; version="2.36.0"; sha256="146fwpzmri7rlz1rq92xh70wrvmbfa5ysa6gv1akajbchgnrmikq"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; + mosbi = derive2 { name="mosbi"; version="1.4.0"; sha256="04fdphz8jcmpxql9v496r7xikqhcbm1kn8a9j6hav9z4w8slg31l"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; + motifStack = derive2 { name="motifStack"; version="1.42.0"; sha256="18gfx5dq83s2ny39a7cgg4r3b05gg9l0kfg83brwrm1cby08jdhm"; depends=[ade4 Biostrings ggplot2 htmlwidgets TFBSTools XML]; }; + motifbreakR = derive2 { name="motifbreakR"; version="2.12.0"; sha256="0lq79as9gb48hf3v2xj895s0nsjr37fqah4p405kdybzry56gvrq"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; + motifcounter = derive2 { name="motifcounter"; version="1.22.0"; sha256="0vsjnp19c8wscb3n2wkqvmssx052fr8wcfb6y67393mq1pqa719m"; depends=[Biostrings]; }; + motifmatchr = derive2 { name="motifmatchr"; version="1.20.0"; sha256="01k2ngf4nj2cazb3a2c96by86xwdkdngzwhb73n2wadibamnqnfv"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; + mpra = derive2 { name="mpra"; version="1.20.0"; sha256="04pqnpsdak6yqmd99bfkild15s6szlwy86dxlnbd1fxvpyarfnf9"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; + msImpute = derive2 { name="msImpute"; version="1.8.0"; sha256="0mlybbrs6k5z41lhd3pvmvakqd1d1pkrvf0jkrbdwzs9grb5d4nn"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; + msPurity = derive2 { name="msPurity"; version="1.24.0"; sha256="1w998i5lv1c2485cmdzk31inykhl64s7njaj725cs1r3gzi4l7h4"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 magrittr mzR plyr Rcpp reshape2 RSQLite stringr]; }; + msa = derive2 { name="msa"; version="1.30.1"; sha256="064hmry0zhmpchxgjsw0krsybr9v9gbsz26zmj2a39pg1nggwbq4"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; + msgbsR = derive2 { name="msgbsR"; version="1.22.0"; sha256="0g6d0gx5af61svxjdzx438vz24sd81qml7f755kq8nrr89pacvh0"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; + mslp = derive2 { name="mslp"; version="1.0.1"; sha256="01w9lzfl1vci4z63yzcjk9fn7yzkcxiw6ms528qbg3nmfq08kx5a"; depends=[data_table doRNG fmsb foreach magrittr org_Hs_eg_db pROC randomForest RankProd]; }; + msmsEDA = derive2 { name="msmsEDA"; version="1.36.0"; sha256="17xklsg483zd205q5hyxy6b3cgrb53pplb1wc7pmv5638y7nsq2v"; depends=[gplots MASS MSnbase RColorBrewer]; }; + msmsTests = derive2 { name="msmsTests"; version="1.36.0"; sha256="10frsvqhi3i0v2w4q4q9xz1ykyf6s3nrjlmn94x3kd06p3s839k3"; depends=[edgeR msmsEDA MSnbase qvalue]; }; + msqrob2 = derive2 { name="msqrob2"; version="1.6.0"; sha256="1namy5kjxw963aywynyqqg0d0fzjdx5hxszah7765d10r3hhk0l7"; depends=[BiocParallel codetools limma lme4 MASS Matrix MultiAssayExperiment purrr QFeatures SummarizedExperiment]; }; + multiClust = derive2 { name="multiClust"; version="1.28.0"; sha256="0mw48jm154c0k9nhal56xc4jv0n3ms0s1770g2i2lxkr37905swq"; depends=[amap cluster ctc dendextend mclust survival]; }; + multiGSEA = derive2 { name="multiGSEA"; version="1.8.0"; sha256="0ynjagm3djfvg69lwbhsl896wv46mkr6x7m8f28c8a9v42xrw4pk"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metap rappdirs rlang]; }; + multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.16.0"; sha256="0mwb61c6yqq1frnsgp3nafmlrl1zi8sxckp5yw7z083805y3fbyr"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; + multiMiR = derive2 { name="multiMiR"; version="1.20.0"; sha256="1zfjr1cw1qpi70wxrkw32y3dmwhbsdzd2522cgkj4x97g4d5cn99"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; + multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.22.0"; sha256="0g28ksb9vf2lpv15s9s64nnz6smhxrf9cbsw4kba0dlyrrzzha4a"; depends=[doParallel foreach SummarizedExperiment]; }; + multiSight = derive2 { name="multiSight"; version="1.6.0"; sha256="1rpikqpg6y2dzgfb3wz92cf45kbvcd4izybkil54gls7wvq0a79i"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot ggnewscale golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; }; + multicrispr = derive2 { name="multicrispr"; version="1.8.0"; sha256="17b2c387f7xb8gcsbxqks9j7jr2yi1hysrjdl1vqxzwlzzz7v4az"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; + multiscan = derive2 { name="multiscan"; version="1.58.0"; sha256="1fj9fap9nz3cr9hvdhjnw4qbv684vsqjaf29sjcjvsay5f919gfy"; depends=[Biobase]; }; + multtest = derive2 { name="multtest"; version="2.54.0"; sha256="0ciz0fl0pzm4hjqw8af32s540lwjbkwvwnzgbfwadax40hgjs0g7"; depends=[Biobase BiocGenerics MASS survival]; }; + mumosa = derive2 { name="mumosa"; version="1.6.0"; sha256="0g0597dlzc1z4giq3qn9cy9hm1fywf5qv33lnac4zwb2hvg4qc42"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; + muscat = derive2 { name="muscat"; version="1.12.0"; sha256="07b1z8rd0zibmv3rm4zggjf49lh37p2bp1h919zcw3n0fy2hax1k"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; + muscle = derive2 { name="muscle"; version="3.40.0"; sha256="14dqhmvfdcm8fn27ih5q654rla4qgikj4761lhhnhzyvhqvnmglk"; depends=[Biostrings]; }; + musicatk = derive2 { name="musicatk"; version="1.8.0"; sha256="1l45jkhjciwvpy86c5ql3j6s8cm4d8crwdp45gj01xl23x1gkdgf"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap cowplot data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny shinyalert shinyBS shinybusy shinydashboard shinyjqui shinyjs sortable stringi stringr SummarizedExperiment TCGAbiolinks tibble tidyr topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation withr]; }; + mygene = derive2 { name="mygene"; version="1.34.0"; sha256="1aldf0x5vivjbhp169chg5k3fq5r41fiykxii8f7z580h3spmapm"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; + myvariant = derive2 { name="myvariant"; version="1.28.0"; sha256="14p8x89ff9j4qzq4mghnxiwk6hac22hrq0zsvj2918srmwx18cjr"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; + mzID = derive2 { name="mzID"; version="1.36.0"; sha256="0h5w5ykbziaif6m61pa5x92f2rblfgldvj9vajfhkmxj1b2ks9za"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; + mzR = derive2 { name="mzR"; version="2.32.0"; sha256="0p7mkvvaf25si95lpwpr65jm3dzxmgs9i0wilyb2mbxkdcz9vm71"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib]; }; + nanotatoR = derive2 { name="nanotatoR"; version="1.14.0"; sha256="1lb9jn0wi1rn3dcgc5b5fg3xvpm8dcws3ryxb29nvxjhiy7ry90z"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse VarfromPDB XML XML2R]; }; + ncGTW = derive2 { name="ncGTW"; version="1.12.0"; sha256="0jxchaq442kmprz65pv43xjj4cwv29aq28jz8l3ih70k873g8ap9"; depends=[BiocParallel Rcpp xcms]; }; + ncRNAtools = derive2 { name="ncRNAtools"; version="1.8.0"; sha256="0mbf3x2bf1qk2y7a0xjyvlj591b5dcl51f21vvkb0ikdm3bjiqz5"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; + ncdfFlow = derive2 { name="ncdfFlow"; version="2.44.0"; sha256="0ak1rrd0r899nz4zdg9v3pkvlp94sbcc3q6xl249krgbx0a3sizm"; depends=[BH Biobase BiocGenerics cpp11 flowCore Rhdf5lib zlibbioc]; }; + ndexr = derive2 { name="ndexr"; version="1.20.1"; sha256="0m6p9h431xdb0r6q1xsqkdmm7cwrpdizlcisz30dl6f7nlm5pjyv"; depends=[httr jsonlite plyr RCX tidyr]; }; + nearBynding = derive2 { name="nearBynding"; version="1.8.0"; sha256="17fwk2863jb0y980y7f1in04x8529is6bvr2bymnsg7kkk1spvv6"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + nempi = derive2 { name="nempi"; version="1.6.0"; sha256="0x15n5k9jbimg6rljj028dnmnymj9g8ylrds58sa7yxpp0aa9gyl"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; + netDx = derive2 { name="netDx"; version="1.9.0"; sha256="1k6grq4gxr507m43x1srszbic4chvj9qba52h6gdgmpmimfyg5bm"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; + netOmics = derive2 { name="netOmics"; version="1.4.0"; sha256="0fpnydck4vqly14y718bm823b5lxn71k1df60vjfcg9ymxk8qz5z"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; }; + netSmooth = derive2 { name="netSmooth"; version="1.18.0"; sha256="1vivvzv4bl0i5y7mg1dm1rp87vch3k6byrapif3nwzj02f2fwriq"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; + netZooR = derive2 { name="netZooR"; version="1.2.0"; sha256="00drgnk8fvjfsbmlj8nh20yvly4z0a0xfsxxcany2kygi8r1yq7h"; depends=[AnnotationDbi assertthat Biobase data_table doParallel dplyr foreach ggdendro ggplot2 GO_db GOstats gplots igraph MASS Matrix matrixStats nnet org_Hs_eg_db pandaR penalized RCy3 reshape reshape2 reticulate STRINGdb tidyr vegan viridisLite yarn]; }; + netbiov = derive2 { name="netbiov"; version="1.31.0"; sha256="0ldpbq8d7hq6sa5qcc5qh23plczg35170v3fifyz6a47vghr5ff9"; depends=[igraph]; }; + netboost = derive2 { name="netboost"; version="2.6.0"; sha256="16af13gzzgs9250jxs4w6vnv79fvqgh5v8db6skfccnnq6x2v1md"; depends=[colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; + netboxr = derive2 { name="netboxr"; version="1.9.0"; sha256="1brnm60745s2axls4p6qcxipjjr3ph9ijg1q604fgm42rf6i7qzm"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; }; + nethet = derive2 { name="nethet"; version="1.30.0"; sha256="0dhyjphj0134kx91ny94g0yd6kbjxb5qlbrds2z31bgxcxpms9gb"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; + netprioR = derive2 { name="netprioR"; version="1.24.0"; sha256="18cmg460hqygxxdsq3d4ns9aqbvj5knh9lv1d45fd3k1k9fhvsql"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; + netresponse = derive2 { name="netresponse"; version="1.58.0"; sha256="1d1285sgk86yi4sc93dhyizzs1a6333z6kcmpk3a7ki6z27a3jjk"; depends=[BiocStyle ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; + ngsReports = derive2 { name="ngsReports"; version="2.0.2"; sha256="0yyqbrykzww68s7f5n7nswfj8lsif5gv6jl1i9fmlklslp9sk997"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 lifecycle lubridate pander patchwork plotly readr reshape2 rlang rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; + nnNorm = derive2 { name="nnNorm"; version="2.62.0"; sha256="0n01vsqhr9pgsyijvlp9k89l7yzs99f4xi1p7i5zmiffd39p013d"; depends=[marray nnet]; }; + nnSVG = derive2 { name="nnSVG"; version="1.2.0"; sha256="1mxsii17msqww37q5zgfmdyd6sv00mn1yz44lqkaa7pbldyhhixk"; depends=[BiocParallel BRISC Matrix matrixStats SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + nondetects = derive2 { name="nondetects"; version="2.28.0"; sha256="0n1ikrxz6gr27i86vv0j7x8m63rwl07wn72jzn4p4h1j46fzqdvp"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; + normalize450K = derive2 { name="normalize450K"; version="1.26.0"; sha256="1a9q6dwkqg2s5q29rpx9lvhws8hnzdjc8dk6c56mh1q02gpxz8v3"; depends=[Biobase illuminaio quadprog]; }; + normr = derive2 { name="normr"; version="1.24.0"; sha256="1vx9v22am8vc5r9fml1nblm2x64zrifsqxlav9y0af4mbpd76d34"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; + npGSEA = derive2 { name="npGSEA"; version="1.34.0"; sha256="014w7f95h44da6c7kwsddzp3wjbfyy3f697wykgz659hv86zdx0h"; depends=[Biobase BiocGenerics GSEABase]; }; + nuCpos = derive2 { name="nuCpos"; version="1.16.1"; sha256="07870x1c6r05difar1vkk92vgkp2d30k29rgf3l8zqc7fbx11mca"; depends=[]; }; + nucleR = derive2 { name="nucleR"; version="2.30.0"; sha256="0j8g0lf6pzqzak259fp6xckgcjrabqgd28bwy9fbx3pd1qj5yrh0"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; + nucleoSim = derive2 { name="nucleoSim"; version="1.26.0"; sha256="0cgljwk9car3s5ncslx0j0bya6hchfv1zk09q8r0y6258mim4qy6"; depends=[IRanges S4Vectors]; }; + nullranges = derive2 { name="nullranges"; version="1.4.0"; sha256="01f7x99nzgi0si02p5bsjvf0mybl52kxnkm2j1f1s2rai5srkca4"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales speedglm]; }; + occugene = derive2 { name="occugene"; version="1.58.0"; sha256="13hv71w25jzlf0fs5wx400m1zh4l4vxlvv42vidiyggj894ky5a3"; depends=[]; }; + octad = derive2 { name="octad"; version="1.0.0"; sha256="0qa407rhi9z1n2hif40j27vbfsy222wi2hh26qn4s0s7f2fnfyfl"; depends=[AnnotationHub Biobase data_table DESeq2 dplyr EDASeq edgeR ExperimentHub foreach ggplot2 GSVA htmlwidgets httr limma magrittr octad_db plotly reshape2 Rfast rhdf5 RUVSeq S4Vectors]; }; + odseq = derive2 { name="odseq"; version="1.26.0"; sha256="0p51lay3xasqg55j99gdx1gpk93p4m2czvbw912h559v2s4hnzqq"; depends=[kebabs mclust msa]; }; + oligo = derive2 { name="oligo"; version="1.62.0"; sha256="0l6yb58frh4c080k6h8wyipc5kiz4qi7jimnr62jg8d737rrvnk2"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; + oligoClasses = derive2 { name="oligoClasses"; version="1.60.0"; sha256="1ik9xfx6g4gf54hm5f5prip1iz6694czpbhlgwd3p9qh8ddndgp8"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; + omada = derive2 { name="omada"; version="1.0.0"; sha256="1p9nywbh81d91cah8in5aa4say3zd9159f266k8qbk1psy93zz07"; depends=[clusterCrit clValid diceR dplyr fpc ggplot2 glmnet kernlab pdfCluster Rcpp reshape]; }; + omicRexposome = derive2 { name="omicRexposome"; version="1.20.0"; sha256="13xgp6hnn9py8400k1411fyzlxskdlams2x0p7skn44219iqpqwj"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; + omicade4 = derive2 { name="omicade4"; version="1.38.0"; sha256="1w9fsg0r6ir9nmmpf08b1mh8mnrzxk3f398y1w5dg34fdz4phgpg"; depends=[ade4 Biobase made4]; }; + omicplotR = derive2 { name="omicplotR"; version="1.18.0"; sha256="1h3r0lhkaqhl6cc05m4qjwl3hyz8ayig6xmj1jqi1kcm291js54c"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; + omicsPrint = derive2 { name="omicsPrint"; version="1.18.0"; sha256="0zjidzy0nd9pb8f704xasm2nindaz953pmmv86c9fq0dmcv63wz4"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; + omicsViewer = derive2 { name="omicsViewer"; version="1.2.0"; sha256="1di3wyf6nzl39shbqmcxjr2kxmn7gghh0z977ax6lfzzwmqvqgzr"; depends=[beeswarm Biobase curl DT fastmatch fgsea flatxml ggplot2 ggseqlogo htmlwidgets httr Matrix matrixStats networkD3 openxlsx plotly psych RColorBrewer reshape2 RSQLite S4Vectors shiny shinybusy shinycssloaders shinyjs shinythemes shinyWidgets stringr SummarizedExperiment survival survminer]; }; + ompBAM = derive2 { name="ompBAM"; version="1.2.0"; sha256="0kfym9xlhjqrlcdzpvl0533f7pgyffgb4adwda6wiyq3mbyag5l6"; depends=[Rcpp zlibbioc]; }; + oncomix = derive2 { name="oncomix"; version="1.20.0"; sha256="0mdjyq2awrvh0r5sivb5zk0zg13100am8dd6r2bvw8nhn1ns5xby"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; + oncoscanR = derive2 { name="oncoscanR"; version="1.0.0"; sha256="05rnw08rc9x65rgkw553szjjwqx0b9i6brg7hc0x8r180il22z9k"; depends=[GenomicRanges IRanges magrittr readr S4Vectors]; }; + oneSENSE = derive2 { name="oneSENSE"; version="1.20.0"; sha256="1lzb8i3frv3va2q28glwnjwszrynhky5y8fx10q4h52p2wqgc4v3"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; + onlineFDR = derive2 { name="onlineFDR"; version="2.6.0"; sha256="0a66qyhd22vkn58m844fm8y22pv5s52r2hivvq0d9sqns7f8q286"; depends=[progress Rcpp RcppProgress]; }; + ontoProc = derive2 { name="ontoProc"; version="1.20.0"; sha256="1p7849msd9181f3y20n67rac5dbbq5a7z9cggw8y4yh4a9zjz4r0"; depends=[AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny SummarizedExperiment]; }; + openCyto = derive2 { name="openCyto"; version="2.10.1"; sha256="16wsa9dhnz8gz1siyhfxvnbfg142g7fmhxiqxr7n69qpq9w8yhr0"; depends=[BH Biobase BiocGenerics cpp11 data_table flowClust flowCore flowViz flowWorkspace graph ncdfFlow RBGL RColorBrewer]; }; + openPrimeR = derive2 { name="openPrimeR"; version="1.20.0"; sha256="0vc9fj4qz741px820m4yzl0nmfszb9pp8jz0mgm0bn8rypibhs1c"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; + openPrimeRui = derive2 { name="openPrimeRui"; version="1.20.0"; sha256="0m98qwpb84bs0qfk17ibbxkjnknnqlkb21hmhqkjnd3hxrk615zc"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; + oposSOM = derive2 { name="oposSOM"; version="2.16.0"; sha256="0czk9bgi381vxa4n8hqamsq7aih26xi8wg3j8c1f2wlxhg6ha5ka"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; + oppar = derive2 { name="oppar"; version="1.26.0"; sha256="1ikivqi8dw8dsfbv115g79j7pkk37dxw2bwfdk0bmn0y1qnwr60l"; depends=[Biobase GSEABase GSVA]; }; + oppti = derive2 { name="oppti"; version="1.12.0"; sha256="0v3fahv6miy3zgaypmnp1f1b84l5zz3s3spimhxl1jbm26safj13"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; + optimalFlow = derive2 { name="optimalFlow"; version="1.10.0"; sha256="1g47mw0i2gn08f4j7fb190jgb5ap02vaxgs615wnihrnljsihiky"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; + orthogene = derive2 { name="orthogene"; version="1.4.1"; sha256="1bg73n1z0v5py2w5rdvy49793v4l820fwrjd7gsdi8vf5z06hq52"; depends=[babelgene data_table DelayedArray dplyr ggplot2 ggpubr ggtree gprofiler2 grr homologene jsonlite Matrix patchwork repmis]; }; + pRoloc = derive2 { name="pRoloc"; version="1.38.0"; sha256="1rcvqcvvsp0ml6w86n794yw31sxqcwypjr5fb6slkm7bpql1gzij"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; + pRolocGUI = derive2 { name="pRolocGUI"; version="2.8.0"; sha256="0s6pyim5b3qm12ig8amkrf0r5clpk6021b08iw9jfc60qg68hmr2"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; + packFinder = derive2 { name="packFinder"; version="1.10.0"; sha256="1vg5pmra6l75qx8q4pcvfxiz8rcagh9syca5r5xbzi1gwrj4mgvs"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; + padma = derive2 { name="padma"; version="1.8.0"; sha256="02i67ck4wnb7jp88bwnx763ijk7ayk69jrr0n0vzfgr408zvv4ir"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + pageRank = derive2 { name="pageRank"; version="1.8.0"; sha256="00irmzaj7d2hdyc3lf1n2rpl7adsff4hjxxxc0ln1h2lbwhzbm90"; depends=[GenomicRanges igraph motifmatchr]; }; + paircompviz = derive2 { name="paircompviz"; version="1.36.0"; sha256="1nrxn494is198j1yc3janhf8d1vh772k5k5x3qfs75wcz1vwcihh"; depends=[Rgraphviz]; }; + pairkat = derive2 { name="pairkat"; version="1.4.0"; sha256="19z3ymlm93rl9fqcax9m4l7hayqp4vm38lcw9kk3k9pya2yrv8ry"; depends=[CompQuadForm data_table igraph KEGGREST magrittr SummarizedExperiment tibble]; }; + pandaR = derive2 { name="pandaR"; version="1.30.0"; sha256="057hcmgzcp15l8ylgw1rjh5vldsdz6wvf78q3j2m32iw2xrma262"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; + panelcn_mops = derive2 { name="panelcn.mops"; version="1.20.0"; sha256="1wr6sxky839plyshd4yqfsj08v1vqfk0g1z0wbb645n8cn43zawn"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + panp = derive2 { name="panp"; version="1.68.0"; sha256="17jci5fikyjwkd9h9rysiag8zkzckw3w0z3rxkv6gvazlmiqnyrn"; depends=[affy Biobase]; }; + pareg = derive2 { name="pareg"; version="1.2.0"; sha256="1b5ymhnznjx00vf4y09y2fw75czsd6g75bin4f6h33lpidl8z38x"; depends=[DOSE dplyr furrr ggplot2 ggraph glue igraph keras magrittr Matrix matrixLaplacian nloptr progress proxy purrr reticulate rlang shadowtext stringr tensorflow tfprobability tibble tidygraph tidyr]; }; + parglms = derive2 { name="parglms"; version="1.30.0"; sha256="1c4lhc1ixb765rqkshzlnjqbfx9smqgn40lnizhg84624jcbfmxc"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; + parody = derive2 { name="parody"; version="1.56.0"; sha256="12i5g4ai7a0p81kvqvz1qw099cy3g71n69pij8w760r3jn0c9ilw"; depends=[]; }; + pathRender = derive2 { name="pathRender"; version="1.66.0"; sha256="08g645cjzm4ayj7bxsdlh776h4yg761iqbqs1xzh7ifim6ibzh6f"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; + pathVar = derive2 { name="pathVar"; version="1.28.0"; sha256="1ygydyynfj5bqjkrrikxxqhj4bvnrif1hy0csfhm9dj19rwb891n"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; + pathifier = derive2 { name="pathifier"; version="1.36.0"; sha256="158dblhgx10wi78k8y48g9x7rw70pydc6bjrx65nzkl1h6i4km9s"; depends=[princurve R_oo]; }; + pathview = derive2 { name="pathview"; version="1.38.0"; sha256="0p7cdq03863zpw009prs1yh3gps1kw135anjfq6wpdkwza7xy4py"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; + pathwayPCA = derive2 { name="pathwayPCA"; version="1.14.0"; sha256="1ss71zs4jshvl3i2li0jfny5xr4lq9p25hbcm1kznpx3l9g9lklj"; depends=[lars survival]; }; + paxtoolsr = derive2 { name="paxtoolsr"; version="1.32.0"; sha256="02cwf2sypdf4fiyns1vfqy3djn6plq9w0zsisl2xlyrln7apmsl1"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="2.24.0"; sha256="0gs4az4h5mwnr3s8fq7im5p3mm4mhc0x5amjr2badqkw1fih3jp7"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; + pcaMethods = derive2 { name="pcaMethods"; version="1.90.0"; sha256="1cjmkfpbbfzkx6bi3r9jjx54iwkm4gl8hqa1776hxicq2x2c83s4"; depends=[Biobase BiocGenerics MASS Rcpp]; }; + pcxn = derive2 { name="pcxn"; version="2.20.0"; sha256="04h3nmm3xmzlgzqm6wnlw4mzhazy0ngbif9w35y9caazf2d0f7k8"; depends=[pcxnData pheatmap]; }; + pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.62.0"; sha256="06gplxjpkv9hkcvf536hr3w5fj3gfdc3klfxf7d15ivy4szr0nm5"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + peakPantheR = derive2 { name="peakPantheR"; version="1.12.2"; sha256="0fdpg17m4dsq53nynbqw08i3qiplvsm0bzaj6bcslr5rc2psnpxy"; depends=[bslib doParallel DT foreach ggplot2 gridExtra lubridate minpack_lm MSnbase mzR pracma scales shiny shinycssloaders stringr XML]; }; + peco = derive2 { name="peco"; version="1.10.0"; sha256="1pmq3rag4qn62yicrafl5yrkhqb383iz5jv5d6v9fsf4jjs1048j"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; + pengls = derive2 { name="pengls"; version="1.4.0"; sha256="1cmpwdq1b5sz1nwvzh25xmv5x37dcnhxz5i7fwjyqa9my2m0r6is"; depends=[BiocParallel glmnet nlme]; }; + pepStat = derive2 { name="pepStat"; version="1.32.0"; sha256="06m1ny2wa41sfaz9inmj2wi58j6qd49ncd9yx79hkrh3zymz0fc4"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; + pepXMLTab = derive2 { name="pepXMLTab"; version="1.32.0"; sha256="13bwyxlf8nx86ldzj01qlfba6yh75pzb1kjkpi7p7hs1b0yvb5xp"; depends=[XML]; }; + periodicDNA = derive2 { name="periodicDNA"; version="1.8.0"; sha256="03wdxbgsrj2c7j3fgxigjbq349y5c8cw80xvb5ja7lbi1isfb785"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; + pgca = derive2 { name="pgca"; version="1.22.0"; sha256="0bcq1qks87jjgd2bwpds6xvcvidcvl9pq53mi0dafihgd0s2ycfn"; depends=[]; }; + phantasus = derive2 { name="phantasus"; version="1.18.2"; sha256="05js71pilnkkdycir1v46rf5l9vgkqnijavbm99csrqzr5dgwgrx"; depends=[AnnotationDbi assertthat Biobase ccaPP curl data_table DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; + phenoTest = derive2 { name="phenoTest"; version="1.46.0"; sha256="0rcgbnqglfs9asyrssnhy7h99kikmnr7s1827y8q2agq3pl96q13"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; + phenomis = derive2 { name="phenomis"; version="1.0.2"; sha256="15lk3wapaaqqrlp02b2cvdlx8dgcvc3vjsfv8i70qh89rljialf8"; depends=[Biobase biodb biodbChebi data_table futile_logger ggplot2 ggrepel htmlwidgets igraph limma MultiAssayExperiment MultiDataSet plotly PMCMRplus ranger RColorBrewer ropls SummarizedExperiment tibble tidyr VennDiagram]; }; + phenopath = derive2 { name="phenopath"; version="1.22.0"; sha256="0p2lh858ykhqz0zj4h1vmjd27szwkrlswanapz4shhmvb4plrlbv"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; + philr = derive2 { name="philr"; version="1.24.0"; sha256="0k93rl2wm9hzp9bcq2v35hn1p4wy8xarb5rzl92wa5w3fj0j4nlw"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; + phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.22.0"; sha256="1gap3ihi1xymfp3nymxss4fnhyrpzbva29ki6wdrsizr188d7b0k"; depends=[matrixStats plyr]; }; + phyloseq = derive2 { name="phyloseq"; version="1.42.0"; sha256="07zi059v6zwrm31qwc7fmg35fwqlqfb6c30wwj9q4m2y67srnskk"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; + piano = derive2 { name="piano"; version="2.14.0"; sha256="10bq5k93gx35ysi7ja3821scrn455cyy8syc6aivaz00hcf7mzd8"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; + pickgene = derive2 { name="pickgene"; version="1.70.0"; sha256="0f6p41ryssw50il1hys6nhm818yzm4ppbksqm0mm7v6knk0mywzi"; depends=[MASS]; }; + pipeComp = derive2 { name="pipeComp"; version="1.8.0"; sha256="1nkfhza6nn0gzlfpg0c24rysz43vkx9syaccsrsn3a9i3vm76jh5"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; + pipeFrame = derive2 { name="pipeFrame"; version="1.14.0"; sha256="1wa06z8q7cxjaaq6fjvs69hd1yrl8s0gjn0733drrwsvsclp43ay"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; + pkgDepTools = derive2 { name="pkgDepTools"; version="1.63.0"; sha256="10q0z1ps073py82zqii4sfdhnpvcyj4sx1yx3lzy5c41l8py6lag"; depends=[graph RBGL]; }; + planet = derive2 { name="planet"; version="1.6.0"; sha256="0260kdkambx29bl449a8ydysw99gq5pydaj8dq9bpn7p9rqd29xs"; depends=[dplyr magrittr tibble]; }; + plethy = derive2 { name="plethy"; version="1.36.0"; sha256="09929w6rd84hvz6fiydd5v0php9gvbvxgvsnxvkzwyxfmmmx1dzr"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; + plgem = derive2 { name="plgem"; version="1.70.0"; sha256="0hnhfdrlg4907dc4s17cy4kgmq5nr616f1wi7jn72acxwqfl4bk8"; depends=[Biobase MASS]; }; + plier = derive2 { name="plier"; version="1.68.0"; sha256="116d55v0jwlb11imac8swi7l4prn829sq2jvr1iqsijb7vqlvqli"; depends=[affy Biobase]; }; + plotGrouper = derive2 { name="plotGrouper"; version="1.16.0"; sha256="19d4rgrvk96fm1w0iqx0nyfxgxkwh6xmvgw8bxj7rf8z5qmin9hm"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; + plotgardener = derive2 { name="plotgardener"; version="1.4.2"; sha256="0c9n5hj3ib3nz3qc8jb2hvbl72c5pjpiny9hrygcw52aikj2wwjy"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr]; }; + plyranges = derive2 { name="plyranges"; version="1.18.0"; sha256="0lz43rwj7198s80lj2xk4r3dn3l1cpwxwvln5wz19l9131d8hclv"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; + pmm = derive2 { name="pmm"; version="1.30.0"; sha256="1yma0zpas34wh8axmq3q8hv3gp5vq9zsjvkbmzqd8mnvmkd4pbkg"; depends=[lme4]; }; + pmp = derive2 { name="pmp"; version="1.10.0"; sha256="10307945brcglm0c3ixbbn0icvb9aaclj0fvp1v56c9p2820j4ix"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; + podkat = derive2 { name="podkat"; version="1.30.0"; sha256="0nd32qksdja1p1q7qcn87l4fyd7cqr8n6zgdqhhl811ag9pviizr"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; + pogos = derive2 { name="pogos"; version="1.18.0"; sha256="12z4nw4by4ms86m5n92p2a13b8pm88xrg34159pa4qpn874y4g91"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; + polyester = derive2 { name="polyester"; version="1.34.0"; sha256="16wa4ylipkpk6a1vyaiic1vs73x0xif7ik1w5rrh9mkr16lbdixs"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; + powerTCR = derive2 { name="powerTCR"; version="1.18.0"; sha256="1d4wcvhkzzvm4g6v70dfx29iwrlry44bymprwir77y2dbwwr142f"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; + ppcseq = derive2 { name="ppcseq"; version="1.6.0"; sha256="1qywxjk2m8hxazw0238pdwzw2c6p7vhzx1m6bs3dkzn09jwpgav2"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; + pqsfinder = derive2 { name="pqsfinder"; version="2.14.0"; sha256="116rzlhgyndnx9vylbiw2qgjns58gdzxc6bnxq0n6j81q3ny4a2k"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; + pram = derive2 { name="pram"; version="1.14.0"; sha256="0jxsd9wydj0y5zyfdglh2ik8ba9mzc5y6qw4lpqqwsd0wc99bi94"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + prebs = derive2 { name="prebs"; version="1.38.0"; sha256="0s0ci8dn53b2h9z4vxbwaz58yj8w4s5kzjl5i516gzmhh6s1ss3g"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; + preciseTAD = derive2 { name="preciseTAD"; version="1.8.0"; sha256="002pnnbllb4bnaf1h1giavs4fbwhc7bdf5202nk734c08si33fi8"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; + preprocessCore = derive2 { name="preprocessCore"; version="1.60.0"; sha256="1l0m591scln024jdpib47fndhx2wfp9jgkj3mdmwd9nkc5y0qjda"; depends=[]; }; + primirTSS = derive2 { name="primirTSS"; version="1.16.0"; sha256="00h9m37ga3wsbcafg4c338457xqjlmgmhhkcrvm38x39h20kxrqy"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; + proActiv = derive2 { name="proActiv"; version="1.8.0"; sha256="150n6nglbji1510g6kkq6b7i0nix70c6zahdrr4a6p1dpg15gfgv"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; }; + proBAMr = derive2 { name="proBAMr"; version="1.32.0"; sha256="1pn48pmiz6cgc3hjczhpzgld69my7xk37d1k7k37gm0dwzpd85c3"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; + proBatch = derive2 { name="proBatch"; version="1.13.0"; sha256="1z55rbgjzxkj0i9gwwbh3wa82w9xflnipkkx58bgnni1nfnbia9k"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; }; + proDA = derive2 { name="proDA"; version="1.12.0"; sha256="1b1p8sh80x5967rakyq75cj0sz01303w7p05b9irfr69yvfvlj45"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; + proFIA = derive2 { name="proFIA"; version="1.23.0"; sha256="0y08vj401f45dvgxjwjx94hvd0rk1wljk8n1irpkdafg24gv4fvj"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; + procoil = derive2 { name="procoil"; version="2.26.0"; sha256="1ncls2bgdaaq1kc728p5ay95ypm5byyhpzjck34hfpq867lp7x7m"; depends=[Biostrings kebabs S4Vectors]; }; + profileScoreDist = derive2 { name="profileScoreDist"; version="1.26.0"; sha256="0bc2y8xy4nfainz7s2phmhmdpii1ws7k4cylvqjmr52fnssnxyl3"; depends=[BiocGenerics Rcpp]; }; + profileplyr = derive2 { name="profileplyr"; version="1.14.0"; sha256="1gd231y73ms8n6vyqwwfxl1fm7428amay5lc8ws7ap6q0wlal03a"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + progeny = derive2 { name="progeny"; version="1.20.0"; sha256="0f5sfi9r9dr6w3xmspsbzby8dpza8x7djif7p2h6l99kwkf68jsb"; depends=[Biobase decoupleR dplyr ggplot2 ggrepel gridExtra reshape2 tidyr]; }; + projectR = derive2 { name="projectR"; version="1.14.0"; sha256="08abn5ghixlj4sw8ibfnd9ngs0kvgyc8g7p54wm8q1k45vknvszm"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; + protGear = derive2 { name="protGear"; version="1.2.0"; sha256="0vk1h7zp9hvzilvwdq4346d55axcwbsvjp3vpzwnsjdidszs7q7r"; depends=[Biobase data_table dplyr factoextra FactoMineR flexdashboard genefilter GGally ggplot2 ggpubr gtools htmltools kableExtra Kendall knitr limma magrittr MASS pheatmap plotly plyr purrr readr remotes rlang rmarkdown shiny shinydashboard styler tibble tidyr vsn]; }; + proteasy = derive2 { name="proteasy"; version="1.0.0"; sha256="186g1g5c4i1pdgqc1nwdxlm1nwzggvqswa0ny0195kgqd5ifw5j4"; depends=[AnnotationFilter data_table EnsDb_Hsapiens_v86 EnsDb_Mmusculus_v79 EnsDb_Rnorvegicus_v79 ensembldb Rcpi stringr]; }; + proteinProfiles = derive2 { name="proteinProfiles"; version="1.38.0"; sha256="0a4nwd9dabl3l8bx9fq4dfmqnvmhf8lj832kiswbdb0p8q3dhqvb"; depends=[]; }; + psichomics = derive2 { name="psichomics"; version="1.24.0"; sha256="16i4w3f31qj5n0hcqbli65c3hqf8wx8vdc3sa1axjazrdbjj02sd"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; + psygenet2r = derive2 { name="psygenet2r"; version="1.30.0"; sha256="00isn3avis6j2hdpamy5ps8lvmv6h93cwaimnvhcvnanb5wwksxr"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; + ptairMS = derive2 { name="ptairMS"; version="1.6.0"; sha256="0gmzmqqq9w3a9m3nkiv9j7bhqk7yx3vg9d5cqhr8n64yh97nq06f"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; + puma = derive2 { name="puma"; version="3.40.0"; sha256="1wdn5mgfig1pa153j2z6xa1k7qvha84yyyjc5a7yisrfnfrc9lcx"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; + pvac = derive2 { name="pvac"; version="1.46.0"; sha256="0ahcgw6kvkq0lrx4sbv902yz3gdkygxsqkd18kf45r0jzwd92k2s"; depends=[affy Biobase]; }; + pvca = derive2 { name="pvca"; version="1.38.0"; sha256="1cpyxgw1ynq3dms5yvcwaqd3s55ky80dgy811nl226mji278v9cl"; depends=[Biobase lme4 Matrix vsn]; }; + pwOmics = derive2 { name="pwOmics"; version="1.30.0"; sha256="1mklwy9p6miwzvcjzin5q0qcg9625bmbj5hi9dvm6cq48r0x5gwp"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; + pwrEWAS = derive2 { name="pwrEWAS"; version="1.12.0"; sha256="1y8knyl0axnbidkg1z9n1dmchdb79ixr7d6m1g2zhlzp10kmi4pk"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; + qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.16.0"; sha256="18hswwff9smiz9dr28mmh7fh58wknb8cfzxvg5xdw4fw09cb48m9"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; + qckitfastq = derive2 { name="qckitfastq"; version="1.14.0"; sha256="0220r27adgm8mj348602hzgrbj8f94d0xbcrfg9r5sjaajqbmf8w"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; + qcmetrics = derive2 { name="qcmetrics"; version="1.36.0"; sha256="1ab6w3ghalgjarkq91ci85dwpwp1dqdsj2m9adlmx05wpljg9qc4"; depends=[Biobase knitr pander S4Vectors xtable]; }; + qmtools = derive2 { name="qmtools"; version="1.2.0"; sha256="19zn0q493vn45wllzbzqfgnazr5x6ik2hvh7pay3s95421vls1bd"; depends=[ggplot2 heatmaply igraph MsCoreUtils patchwork rlang scales SummarizedExperiment VIM]; }; + qpcrNorm = derive2 { name="qpcrNorm"; version="1.56.0"; sha256="0am89s61dzzycnih78ywnp955yn2jw728i2r8f4qb37asjbaf8ah"; depends=[affy Biobase limma]; }; + qpgraph = derive2 { name="qpgraph"; version="2.32.0"; sha256="1rzf4r4dfsrcp0flphsd4dc2b2bplkcpnzs1rlvknbmkg2p3hw8j"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; + qrqc = derive2 { name="qrqc"; version="1.52.0"; sha256="0411477y7nazlwbz3pfszr1wfas6qd0g0iz0p9pmq16dw8pzkgg6"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; }; + qsea = derive2 { name="qsea"; version="1.24.0"; sha256="1x3xv6r4qf8c3swycrmh83cigblsg37wjgxlw86gd78a58q84sim"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; + qsmooth = derive2 { name="qsmooth"; version="1.14.0"; sha256="0rgwvcydgmbj16bgxrs5yy1i4vikl9pakfdk6jxacr5p85v9ln07"; depends=[Hmisc SummarizedExperiment sva]; }; + qsvaR = derive2 { name="qsvaR"; version="1.2.0"; sha256="1g0ib16vflc3ncc8drq051r33cd0lavn7y7zw1xskmijxqxymkqh"; depends=[ggplot2 SummarizedExperiment sva]; }; + quantiseqr = derive2 { name="quantiseqr"; version="1.6.0"; sha256="0nxr4h3zwbvi80b5snz6diqm68w7dix0zk5p0zqp28nh1l45cl4w"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; + quantro = derive2 { name="quantro"; version="1.32.0"; sha256="0f274wh0w6nyipac05y6s2m2p60vkls5j4fwa5bc419j68h4znnz"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; + quantsmooth = derive2 { name="quantsmooth"; version="1.64.0"; sha256="1adwws3brb01d4g6yidipnd8akkiyc3gpdr876hy57qnmcq8xipp"; depends=[quantreg]; }; + qusage = derive2 { name="qusage"; version="2.32.0"; sha256="1k2437hpds42ps3qfj828qv3wxw7w3xkhi6zk7fp24sfbq959nf5"; depends=[Biobase emmeans fftw limma nlme]; }; + qvalue = derive2 { name="qvalue"; version="2.30.0"; sha256="1dsia1c9ir989aqrgl5j5v4bysm3pyw9225yrcajiwgl8fxymph4"; depends=[ggplot2 reshape2]; }; + r3Cseq = derive2 { name="r3Cseq"; version="1.44.0"; sha256="1w2brdw6w3fws6p92k6n9bivzrfwa06iwsdzkliy3z4dn13mc3rv"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; + rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.38.0"; sha256="01b5sbh1cdri7fj5ffhmpby3h4qg2lgfyn0jg4zdv8rcj6gagcvw"; depends=[data_table XML]; }; + rCGH = derive2 { name="rCGH"; version="1.28.0"; sha256="0r4jj34p8qinfsl8yvcyijkrcap2ik5qfdyl43az1x13c57724mk"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rDGIdb = derive2 { name="rDGIdb"; version="1.24.0"; sha256="0ghj9712f28y4afgdnpvf11kxi5nghis1rgppx3wfck566yi7s7h"; depends=[httr jsonlite]; }; + rGADEM = derive2 { name="rGADEM"; version="2.46.0"; sha256="070i3jdq8b5w7k42xw2fc3vcmv312i19fa1am4fbk3g3ssnm61p3"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; + rGREAT = derive2 { name="rGREAT"; version="2.0.2"; sha256="1vmm7s5p8wqz1r8g1hy1l3mra3kkf76qgy5jkf84jxz7pi0clbld"; depends=[AnnotationDbi circlize digest doParallel DT foreach GenomeInfoDb GenomicFeatures GenomicRanges GetoptLong GlobalOptions GO_db IRanges org_Hs_eg_db progress RColorBrewer Rcpp RCurl rjson S4Vectors shiny TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.4.0"; sha256="0mj9md7cv1i206a0b3pqmkq9frg5k6k22hqjbsmvjvsql3ir9gcl"; depends=[imager reticulate rGenomeTracksData]; }; + rRDP = derive2 { name="rRDP"; version="1.32.0"; sha256="1fpj6syb1k8kababm7bzgkr2qqqx83vnfm9dnr577yfxldbpfjb6"; depends=[Biostrings]; }; + rSWeeP = derive2 { name="rSWeeP"; version="1.10.0"; sha256="16r6qfphaiwjvwmfxbaxdlfmc5bjyx2n7anlsavfgvh00jp31hm2"; depends=[pracma]; }; + rScudo = derive2 { name="rScudo"; version="1.14.0"; sha256="1bk7w1rb87j6c3280r6bwnvfhfzdv0ck9g96y0a8k1g297gvyvcc"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; + rTRM = derive2 { name="rTRM"; version="1.36.0"; sha256="11dp7vz1343hmaa7lly5m9h9fx94cpqqhsrvbb6vy57bh8nb6v4v"; depends=[AnnotationDbi DBI igraph RSQLite]; }; + rTRMui = derive2 { name="rTRMui"; version="1.36.0"; sha256="1gindmnq5vkapmfjpy9hglbk79g0s1sgzdljmhn3m5925h2al4k0"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; + rWikiPathways = derive2 { name="rWikiPathways"; version="1.18.0"; sha256="0vk6j07xxkpdaybsiip41xavsiwc8qr165sxab5fy1r13w3ya4d3"; depends=[data_table httr RCurl rjson tidyr XML]; }; + rain = derive2 { name="rain"; version="1.32.0"; sha256="0zlb52z0wk6057ph12lj7313bfkpbn502568cgdwify8s6q9g8ms"; depends=[gmp multtest]; }; + rama = derive2 { name="rama"; version="1.72.0"; sha256="0i6crxnzhwxnc55xh2rv36jfwh4bd30alw1f05ixdrxwqwsslbpy"; depends=[]; }; + ramr = derive2 { name="ramr"; version="1.6.0"; sha256="1rn5jvrcl3823124iwwbrjx89yyp3yflhlvjwnf6jldvm5bwqwpz"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; + ramwas = derive2 { name="ramwas"; version="1.22.0"; sha256="1qrsv88q18aqfgznli3y54n3ml3f3fc888kipdqj1akxj70fxlsm"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; + randPack = derive2 { name="randPack"; version="1.44.0"; sha256="15afb49v7fjhlmnm9g2vnjcql288qsxlc0vyyki4m9w24kn8pvsa"; depends=[Biobase]; }; + randRotation = derive2 { name="randRotation"; version="1.10.0"; sha256="1siw6y3izcaw84pccxa1lklcl9y16hay4vn1nippqv47bd1ynawv"; depends=[Rdpack]; }; + rawrr = derive2 { name="rawrr"; version="1.6.0"; sha256="11n29nniqwbbfac05nw72rp6fm2309vwyll0lga6mkpjy71lq9zl"; depends=[]; }; + rbsurv = derive2 { name="rbsurv"; version="2.56.0"; sha256="0icqp84ppmj67vx0w69b7lh437fhydp6y8fi50qj6j8m6la4xr5k"; depends=[Biobase survival]; }; + rcellminer = derive2 { name="rcellminer"; version="2.20.0"; sha256="02nxyqr90izpzmvwi3pighnpf82m5b8rma1l2y24cnrymhrijmji"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; + rebook = derive2 { name="rebook"; version="1.8.0"; sha256="0albrc12i00xwwk7ck1f07vxn0i53pzdhvwgx2x64clz4z2pqhxv"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; + receptLoss = derive2 { name="receptLoss"; version="1.10.0"; sha256="0vzikln11ychk9sx7wi8mpb2vqdh98by308jj4773qnk5flyg7b1"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; + reconsi = derive2 { name="reconsi"; version="1.10.0"; sha256="1hzwjmnbkdb4v8nvsk06vmyh5hm1snjn1a2q21jingppjs0dzvik"; depends=[ggplot2 ks Matrix matrixStats phyloseq reshape2]; }; + recount = derive2 { name="recount"; version="1.24.0"; sha256="1fgqrkgqdn03c32xlhry7ma638l42mnqqvci27j6pa1c5d1l8gva"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; + recount3 = derive2 { name="recount3"; version="1.8.0"; sha256="1syfy713ybsl8vlvfag6i85icv34k1y0f6g6v168snc2z1xq4yrd"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; + recountmethylation = derive2 { name="recountmethylation"; version="1.8.0"; sha256="03zaphvsd61m707czcb02za2brsas51l6l7nidpq9iisiy58fwzk"; depends=[BiocFileCache HDF5Array IlluminaHumanMethylation450kmanifest minfi R_utils RCurl rhdf5 S4Vectors]; }; + recoup = derive2 { name="recoup"; version="1.26.0"; sha256="00ia9a9kqmcn329pvipaz15xfci6rw4377hpf7gnxhjkxx4b1rna"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; + regionReport = derive2 { name="regionReport"; version="1.32.0"; sha256="0ilqm51dnhv5bhda7ljdn1x4hwr4infpngsvwn7wvssvsgp1pcz0"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; + regioneR = derive2 { name="regioneR"; version="1.30.0"; sha256="01anwhz0axdl0g2zsaqz1qdxswxrryarbw6pmn5kmlpz4ipiq049"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; + regioneReloaded = derive2 { name="regioneReloaded"; version="1.0.0"; sha256="1m04wsciqdqjsfqkyb9rpq44jlcwiq0chr441jprg5h905xwcyda"; depends=[cluster ggplot2 ggrepel RColorBrewer regioneR reshape2 Rtsne scales umap]; }; + regsplice = derive2 { name="regsplice"; version="1.24.0"; sha256="06pp0m5y7y7f6bbwrgln76kskffy1mhcz1546657bsaqr67iaxmz"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; + regutools = derive2 { name="regutools"; version="1.10.0"; sha256="198pypw448vp3wa17xw5ygvpidw4fry3qyf5q0z5rv5aq7dwd0ay"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; + restfulSE = derive2 { name="restfulSE"; version="1.20.0"; sha256="10v569icyhnqqmplx21na6jyv5ipf5fbgygpd05fbjy447p8fhay"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; + rexposome = derive2 { name="rexposome"; version="1.20.0"; sha256="19kmfwpqyjl40nny5y8wy9yjbsv798bmd6q08ayk95n8gn7vhpx5"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; + rfPred = derive2 { name="rfPred"; version="1.36.0"; sha256="13nmym6qvfxp85n9qh597vz4w0c4cvpqi9jj68dqvc2z0dhlcij7"; depends=[data_table GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + rfaRm = derive2 { name="rfaRm"; version="1.10.2"; sha256="0i7w6062dl9plf839ildynldgbc1gjis1hw3y2flvkj9q5b32iar"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; + rgoslin = derive2 { name="rgoslin"; version="1.2.0"; sha256="0zcxd91qsz0p8z10cm1d2y81cj5ga7002p5sxzrzay33zcaa0f59"; depends=[dplyr Rcpp]; }; + rgsepd = derive2 { name="rgsepd"; version="1.30.0"; sha256="1bk6i336x2ng1kvgywcs18v6sn47cndahfbpcagl17x77pcna7by"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots org_Hs_eg_db SummarizedExperiment]; }; + rhdf5 = derive2 { name="rhdf5"; version="2.42.0"; sha256="1vxs227d1295fz8irr6fsv603cw96a801j8njhblvs0cry38d087"; depends=[rhdf5filters Rhdf5lib]; }; + rhdf5client = derive2 { name="rhdf5client"; version="1.20.0"; sha256="0wf0mv1kc3gd7vpazdip9253c1727ns9xysqfipg9lf1ydjny1fq"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; + rhdf5filters = derive2 { name="rhdf5filters"; version="1.10.0"; sha256="17x2a3122mm3z9qnalw25am2x08cfpm17nwhigabid3ha3d2mgz1"; depends=[Rhdf5lib]; }; + riboSeqR = derive2 { name="riboSeqR"; version="1.32.0"; sha256="0la8kmxxh5jnqsrmmvyhi313bjdbqkiq16hcxar6mgyjhxlsm610"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; + ribor = derive2 { name="ribor"; version="1.10.0"; sha256="16ikb3815cmwagjjjcv8rmshybpjl0vfc20mpl5xr92dzbnn7jj2"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; + ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.10.0"; sha256="04r0nhjfm659i5n2351f67dghjm9jrfvcnzbf7ylqgnhym4ibzrn"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; + rifi = derive2 { name="rifi"; version="1.2.0"; sha256="0lfs8v0nk19ywj2qz3bws8cpw9z44x2rjcg48ffaj0dan3xazs44"; depends=[car cowplot doMC dplyr egg foreach ggplot2 nls2 nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble]; }; + rmelting = derive2 { name="rmelting"; version="1.14.0"; sha256="0j3k68ms5iarqr7c0haijgxkqai5282awxbjg7cwsman5658l30y"; depends=[Rdpack rJava]; }; + rmspc = derive2 { name="rmspc"; version="1.4.0"; sha256="0lcygxazp137v9m3l7vkp4vpc9v0ahggvy4k53nx8sp84nljgpbh"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; + rnaEditr = derive2 { name="rnaEditr"; version="1.8.0"; sha256="1sk69a2cnnjfm2a9fdyj07zkgnjnzlpx2rdbz2lihck3pf3b63l3"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; + rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.28.0"; sha256="1znbydb4pdmchrwr94r87v3k6zmdh6f2d5vrs3wvs4ak343k86x4"; depends=[RColorBrewer]; }; + roar = derive2 { name="roar"; version="1.34.0"; sha256="1bf3ii3zaxkzw5y1wc5c474bq4cgavb67df54czmd3zi1lbhzphd"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; + rols = derive2 { name="rols"; version="2.26.0"; sha256="0y7r7anz68jl8f6q2v8f4gh32v946xkkk3kzgd38y8lklwdmrf0w"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; + ropls = derive2 { name="ropls"; version="1.30.0"; sha256="0vjwci0z83b56q1wi1k00926f0vh3220a44m0zzfxg2cm5j3fwxb"; depends=[Biobase ggplot2 MultiAssayExperiment MultiDataSet plotly SummarizedExperiment]; }; + rprimer = derive2 { name="rprimer"; version="1.2.0"; sha256="0067jsxs627fmxm8zd5zpycgcyir7mkcph91nn2kawxkhjgxx9wk"; depends=[Biostrings bslib DT ggplot2 IRanges mathjaxr patchwork reshape2 S4Vectors shiny shinycssloaders shinyFeedback]; }; + rpx = derive2 { name="rpx"; version="2.6.0"; sha256="1530qv4z17lilly3qnpibcw7la10giwbvzwfwz6bg4p4q3l2zl6q"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; + rqt = derive2 { name="rqt"; version="1.24.0"; sha256="063prv68avs1nwjwvp3685v1n8xvcpg7zsiy613mqg2k3fp3hjcj"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; + rqubic = derive2 { name="rqubic"; version="1.44.0"; sha256="0cmwx499a3s6a336afzx0h2mkhbxsrh4gpd486y5wxsbq2bva7zh"; depends=[biclust Biobase BiocGenerics]; }; + rrvgo = derive2 { name="rrvgo"; version="1.10.0"; sha256="0zh621sgy56phjm6h5733845js56s33zrww8z62l31v2yg0ff3zq"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap umap wordcloud]; }; + rsbml = derive2 { name="rsbml"; version="2.56.0"; sha256="1syg49qz6vwzyw2zrxwrfb7kzgk0lim1q674f7mfvjah1fnv8bgc"; depends=[BiocGenerics graph]; }; + rsemmed = derive2 { name="rsemmed"; version="1.8.0"; sha256="0y7np05hcq7rhr0c56yiv4y1xqk7kjrlbwad0rqgpnlfscxclcav"; depends=[dplyr igraph magrittr stringr]; }; + rtracklayer = derive2 { name="rtracklayer"; version="1.58.0"; sha256="1qxr0ffmmkbfkbijz7pbks3kvms9k4a5rmma4j9p7ar477fxvlmk"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; + runibic = derive2 { name="runibic"; version="1.20.0"; sha256="0g7hqgsq7h0338fmlb4ipv1kwiijcrfajhgwchn5akhspvsch269"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; + sRACIPE = derive2 { name="sRACIPE"; version="1.14.0"; sha256="079lmgi6az5ri05lvca58msh678r7k1xwk3xhq8iffqh87wy6cmj"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; + sSNAPPY = derive2 { name="sSNAPPY"; version="1.2.2"; sha256="1bg14wwcix64jkl5gbdy3jy2k50q7799swsadj4c5a6hk7bjk6jc"; depends=[BiocParallel dplyr edgeR ggforce ggnewscale ggplot2 ggraph graphite igraph magrittr org_Hs_eg_db pheatmap purrr Rcpp RcppArmadillo reshape2 rlang SummarizedExperiment tibble]; }; + sSeq = derive2 { name="sSeq"; version="1.36.0"; sha256="1w0iq7pih9z8662wj2lj1xbg66n752mx4g2q33ck5vwdxg10ry4c"; depends=[caTools RColorBrewer]; }; + safe = derive2 { name="safe"; version="3.38.0"; sha256="1gza1liz0y2i6f5nnnwbwl99fjp3cr1aknxiy3rmbjydfq8yxbrw"; depends=[AnnotationDbi Biobase SparseM]; }; + sagenhaft = derive2 { name="sagenhaft"; version="1.68.0"; sha256="0hh9gkv07qrlnarrj7h579dhisyq01c5jjl3rvq5w086wfy9154m"; depends=[SparseM]; }; + sampleClassifier = derive2 { name="sampleClassifier"; version="1.22.0"; sha256="0yvqr3xvji7zj6cw6kdr64k4sr71kpw3vwdv1dgi10ws3ygls65m"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; + sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.8.0"; sha256="0b72lqn394l73ck857dfs7iyxidzcjcy9hfamfy72g4p7804xpan"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; + sangerseqR = derive2 { name="sangerseqR"; version="1.34.0"; sha256="1i8zxqw48az743q1gziwp1ah7dkvy0gp26sfa2j20i7lard663mw"; depends=[Biostrings shiny]; }; + sarks = derive2 { name="sarks"; version="1.10.0"; sha256="1f3yypn7dzjq58jnkv3jc0330mddpapzn1wlvq2crjbh161mxaym"; depends=[binom Biostrings cluster IRanges rJava]; }; + satuRn = derive2 { name="satuRn"; version="1.6.0"; sha256="1gldcdnpbxc2bgi5sr3g0cgkfx8gx2jmyadnxzm07zcmi724nsyx"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; + savR = derive2 { name="savR"; version="1.36.0"; sha256="1b7kjgj2r6lgkdnrq91wcwvwb5an0gfdsbyp7j0pvn2byfm4lply"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; + scAlign = derive2 { name="scAlign"; version="1.11.0"; sha256="01gy9p07nyx42i0phgc89yhjavpykzgh1mwr11358ddbwz41hxnr"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; }; + scAnnotatR = derive2 { name="scAnnotatR"; version="1.4.0"; sha256="0rc035kzbzrxvlcpphzg0yg7q82jvlxpi9xjq8q59hvbpyg1sz93"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; + scBFA = derive2 { name="scBFA"; version="1.12.0"; sha256="0884s9laa63yf2p9wf66a67ipkc2x075c432x8p96vr326p4h8nf"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; + scBubbletree = derive2 { name="scBubbletree"; version="1.0.0"; sha256="0ivyp3zf7clr4zbdv2srjv42dx2zvlaq4yprccxb3yimrnmihks6"; depends=[ape future future_apply ggplot2 ggtree patchwork reshape2 scales Seurat]; }; + scCB2 = derive2 { name="scCB2"; version="1.8.0"; sha256="1r1iyw7wyvapnzxclrm036jfjnvlgpjpcwg635g0mwa4wyahsxnl"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; + scClassify = derive2 { name="scClassify"; version="1.10.0"; sha256="0i7r9yiw13lzwvy2vxwkfkj3x7a54gv6r8syxib7qj8yr53nmyiy"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; + scDD = derive2 { name="scDD"; version="1.22.0"; sha256="0kmnmlzww2xfd04lp9nsh0wkigab9ipgqlsn2jrd77fizpd0kvwg"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; + scDDboost = derive2 { name="scDDboost"; version="1.0.0"; sha256="066cp50n7cxr7wbcgz0207gh5a6h3lwbpfkn5w17w06k24f3zjkb"; depends=[BH BiocParallel cluster EBSeq ggplot2 mclust Oscope Rcpp RcppEigen SingleCellExperiment SummarizedExperiment]; }; + scDataviz = derive2 { name="scDataviz"; version="1.8.0"; sha256="0spw9m2grza3n2ghsw6z534xsd786rmww66l2xz7i37wjfdpv26a"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; + scDblFinder = derive2 { name="scDblFinder"; version="1.12.0"; sha256="0gslh28rycx0p6a6fmzbsqy1hg2sn3pp5blxgw01qk9f0ank7szi"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray GenomeInfoDb GenomicRanges igraph IRanges MASS Matrix Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; + scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.18.0"; sha256="04q0132vdcpxkwma91j29pac82fcjgvhhx42ppmxkmdjc3q3adzq"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; + scGPS = derive2 { name="scGPS"; version="1.12.0"; sha256="1ymcrlwxjnq6l8k2dd90iv95ha1x6l29v33106wigiziaw5y1vxs"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; + scHOT = derive2 { name="scHOT"; version="1.10.0"; sha256="0d065rg1942ynvzch3d34hjywgscp8wz1c4i71zmxm5rznkpzsxw"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scMAGeCK = derive2 { name="scMAGeCK"; version="1.9.1"; sha256="1i6l8jxrd66aqk3m9212wsi8jqklvs0agsqrllvf9mrh16js4vby"; depends=[ggplot2 Seurat]; }; + scMET = derive2 { name="scMET"; version="1.0.0"; sha256="0j6zfb1qlqbvfgfr4nqn43lxwgslaxj3dqd2wbnnmmq7zv2hxmdl"; depends=[assertthat BH BiocStyle coda cowplot data_table dplyr ggplot2 logitnorm MASS Matrix matrixStats Rcpp RcppEigen RcppParallel rstan rstantools S4Vectors SingleCellExperiment StanHeaders SummarizedExperiment VGAM viridis]; }; + scMerge = derive2 { name="scMerge"; version="1.14.0"; sha256="0rwhii3ypvv0frbfmlkhyfzwgy2wcrd3kn09w9ikwi8pn8pivcjy"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr igraph M3Drop pdist proxy ruv S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scPCA = derive2 { name="scPCA"; version="1.12.0"; sha256="1r84lnhmmhvb4qfmi575gjb2nrd4izaz9f4dzb1k8bmy83fkyfmv"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; + scPipe = derive2 { name="scPipe"; version="1.20.2"; sha256="1qy0chb4w30lpywmyd1a0xfa8r58n95pd9hnr2cx5y38vhz8x9b8"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hash magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib rlang robustbase rtracklayer S4Vectors scales scater SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; + scReClassify = derive2 { name="scReClassify"; version="1.4.0"; sha256="0jq5ygm9s2sxh7z7hdrjgzm7kvyba6lrxnva6nv8qvlhkcczfnl0"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; + scRecover = derive2 { name="scRecover"; version="1.13.0"; sha256="1qwdgs4jf3xy4x9jdd0m4c9iawq3kdghdswicyf85wrw08hlggc2"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl rsvd SAVER]; }; + scRepertoire = derive2 { name="scRepertoire"; version="1.8.0"; sha256="06807wfmj5gdjh55fx2fphalbms3a83mpyrhyigpb2whbr9yzmql"; depends=[doParallel dplyr ggalluvial ggplot2 ggraph igraph plyr powerTCR reshape2 rlang SeuratObject SingleCellExperiment stringdist stringr SummarizedExperiment tidygraph vegan]; }; + scShapes = derive2 { name="scShapes"; version="1.4.0"; sha256="1n0y86kd5cf4wz035q1pflifd5c455l2x57vfsfixmn5inixg6g1"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; + scTGIF = derive2 { name="scTGIF"; version="1.12.0"; sha256="0fx0n7ll5p3fxhd0v5366knpnisrbsadimpd9z0l3zw9818kr12p"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; + scTHI = derive2 { name="scTHI"; version="1.10.0"; sha256="1x0yhqa7h1gfz1z1hm051b2ml1q8nlc9q0rm1mp38nc23hcjaj7n"; depends=[BiocParallel Rtsne]; }; + scTensor = derive2 { name="scTensor"; version="2.8.0"; sha256="0i15w3vl1yydag30kk7q5w95gjksb9ashann73xlp7v3j8ap1apq"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; + scTreeViz = derive2 { name="scTreeViz"; version="1.4.0"; sha256="19pccz1j8pdx9a155hcs7f28p34zk3m3jaiywsbmxaxxd93bg084"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; + scanMiR = derive2 { name="scanMiR"; version="1.4.0"; sha256="009i4dkagv0mpmx8k8rdr1sl9n79kayfjj953h11b1x8i9gkshkj"; depends=[BiocParallel Biostrings cowplot data_table GenomeInfoDb GenomicRanges ggplot2 ggseqlogo IRanges S4Vectors stringi]; }; + scanMiRApp = derive2 { name="scanMiRApp"; version="1.4.0"; sha256="1cd77fij54iadbwlyl3l1w6fma85y2n9azmg5mbqr0sa977swgqr"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard shinyjqui waiter]; }; + scater = derive2 { name="scater"; version="1.26.1"; sha256="1mjnf2y41lvni77g9hyw8qlvlsi5nxv5ha0fnch1kmw9814nycq3"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ggbeeswarm ggplot2 ggrastr ggrepel gridExtra Matrix pheatmap RColorBrewer RcppML rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment uwot viridis]; }; + scatterHatch = derive2 { name="scatterHatch"; version="1.4.0"; sha256="0fig318c9njgl3ficp7fnriip3k9ig72g0r2jvp9q7aahjap586v"; depends=[ggplot2 plyr spatstat_geom]; }; + sccomp = derive2 { name="sccomp"; version="1.1.0"; sha256="1bx7zknpd377ailidgn0p6xl9bx0j7lpxkm4igjpy8lr6mya6fq3"; depends=[BH boot dplyr forcats ggplot2 ggrepel lifecycle magrittr patchwork purrr Rcpp RcppEigen RcppParallel readr rlang rstan rstantools scales SeuratObject SingleCellExperiment StanHeaders stringr tibble tidyr tidyselect]; }; + scde = derive2 { name="scde"; version="2.26.0"; sha256="0qwfhqph5nl45y68bb5083l5q9zjydhs3wv2i70mcfrzcayqqrhl"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; + scds = derive2 { name="scds"; version="1.14.0"; sha256="0zdf9yf5s0l8ma7d8yhi7bjd964yj84f5h6aq2p0sypjlnc515hd"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; + schex = derive2 { name="schex"; version="1.12.0"; sha256="08xfbf8yiwzhzi0p1cix5hdnshlib5mg42qpk7ir5667i5lp5l1h"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; + scifer = derive2 { name="scifer"; version="1.0.0"; sha256="12zd13awjvwpgyinrixr7ys9989m2zs0w009r0nk0mgy0fh8vwhp"; depends=[Biostrings data_table DECIPHER dplyr flowCore ggplot2 gridExtra kableExtra knitr plyr rlang rmarkdown sangerseqR scales stringr tibble]; }; + scmap = derive2 { name="scmap"; version="1.20.0"; sha256="14vyjvfs2n4h0xsy25xg4zdmc8dqbg5vyl3qns6f0rh4bsshqdlm"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scmeth = derive2 { name="scmeth"; version="1.18.0"; sha256="1gqgq6ganjm8madimxbqyw3z2fxq8d3pjhrfjvmkwgd2fzk3wb4a"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; + scone = derive2 { name="scone"; version="1.22.0"; sha256="0pg09r28xqjlvb6nbswglnmwi05q63fag6rp3sw41g6z8gm5wap7"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; + scoreInvHap = derive2 { name="scoreInvHap"; version="1.20.0"; sha256="1y0vinj3si683z1d9hfaxfwgn6jshi7h689ixqygqciq63gac5wj"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; + scp = derive2 { name="scp"; version="1.8.0"; sha256="0n238jfn97y3njgfjqjf0baqr1l5pv2jm5zamyxyrz86p2811flf"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scran = derive2 { name="scran"; version="1.26.0"; sha256="11iwpw44600pfx01vqil97k728m1wf4dljr27k2ak4s7z75kxfih"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; + scruff = derive2 { name="scruff"; version="1.16.0"; sha256="0hg0f8k3mxhz4mk5r6qdhkr5h8rd1zv0x54bm1fq9pfc9vp90b8b"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; + scry = derive2 { name="scry"; version="1.10.0"; sha256="0vx6fi8hnxms6d3hm3qxkrdx1qpyd7vhwdk7ds98ads070miqr21"; depends=[BiocSingular DelayedArray glmpca HDF5Array Matrix SingleCellExperiment SummarizedExperiment]; }; + scuttle = derive2 { name="scuttle"; version="1.8.2"; sha256="0anzmrhm6480p7xqsvpbihrrsv2bvz8znnlf46drwf1bd8n2hc3l"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + sechm = derive2 { name="sechm"; version="1.6.0"; sha256="124dmcksw1yl7p0rwsp1ddlfv3ing56ggkaln421n9jnmj13fv0l"; depends=[circlize ComplexHeatmap matrixStats randomcoloR S4Vectors seriation SummarizedExperiment]; }; + segmentSeq = derive2 { name="segmentSeq"; version="2.32.0"; sha256="059q1wr1sfpi7vh7lrkpfzjd8rz19ya837y7hack0i9icygwjmk3"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; + segmenter = derive2 { name="segmenter"; version="1.4.0"; sha256="05ichsmjn3pklrknc95yz9ghhvwjg0y2jw6wcx2pf4d6iiwg7d5c"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + selectKSigs = derive2 { name="selectKSigs"; version="1.10.0"; sha256="1pnqywp3wabd586xhlvxkrjvc1fyl4b0b6945rpz3qbaw1475pa6"; depends=[gtools HiLDA magrittr Rcpp]; }; + semisup = derive2 { name="semisup"; version="1.22.0"; sha256="1wn2a86rdvh8p37iifhmsq149j135dyp1h0xr86xfj88ffzj0y9n"; depends=[VGAM]; }; + seq2pathway = derive2 { name="seq2pathway"; version="1.30.0"; sha256="0g43693cqqi51fbfr28hbhcmnjam6vvf1llzn1wizbahcchgjvwx"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; + seqArchR = derive2 { name="seqArchR"; version="1.2.0"; sha256="03j4vff2lp1zzikhfa5sflnc0bd63r72aqim3jdsyrk5ic6355d3"; depends=[BiocParallel Biostrings cli cluster cvTools fpc ggplot2 ggseqlogo MASS Matrix matrixStats prettyunits reshape2 reticulate]; }; + seqCAT = derive2 { name="seqCAT"; version="1.20.0"; sha256="0hv0sabc82ak49di42xf7an9csgp9q0d9wkx7d1sjlfm9ayza88z"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; + seqCNA = derive2 { name="seqCNA"; version="1.44.0"; sha256="08hhjp5prgnr3c2j2r69f5sl2wf5jd1mrdy43b1kmnlpnm3yz16i"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; + seqLogo = derive2 { name="seqLogo"; version="1.64.0"; sha256="1xlxi1iaqj7iabzbx15j6pk4551dyj6pa6a6qf5ffr3v7k2pmznp"; depends=[]; }; + seqPattern = derive2 { name="seqPattern"; version="1.30.0"; sha256="17nvxy8kdc1k0kyf0qny6jp3gzr024q37mmh5x18jjr794hnf9s5"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; + seqTools = derive2 { name="seqTools"; version="1.32.0"; sha256="0ya3y3zam68zyw7ky2k8nswk4zd8c0fhihyg6qdw43aicisykms2"; depends=[zlibbioc]; }; + seqbias = derive2 { name="seqbias"; version="1.46.0"; sha256="0mc6lv7vkch138n46gk1q1hfhv37mfxjij39q36wa0jy7s8cagfa"; depends=[Biostrings GenomicRanges Rhtslib zlibbioc]; }; + seqcombo = derive2 { name="seqcombo"; version="1.20.0"; sha256="1q0yfcw30rgnz7l3miy1024vhjlqrhf2w0b3yvs4df6sb2w37q5m"; depends=[ggplot2 igraph yulab_utils]; }; + seqsetvis = derive2 { name="seqsetvis"; version="1.18.0"; sha256="07hsapdr1562jkf7xacpx97lq1rc3935smkxy22w4nzk7a6715sw"; depends=[cowplot data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; + sesame = derive2 { name="sesame"; version="1.16.1"; sha256="01b2a06xz9cggr57m920dh1pylac30l5w8mxq5vcb4jbl1flh6py"; depends=[BiocFileCache BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore readr reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; + sevenC = derive2 { name="sevenC"; version="1.18.0"; sha256="1xw0whm905zm644iadv7yiqid82pxw46mv0n6m24591hc7p0xjyf"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; + sevenbridges = derive2 { name="sevenbridges"; version="1.28.0"; sha256="1sfwa4i3ak87wfj04y5gi4a5cw9by27xqv41gz29sgclh61gmpc0"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; + shinyMethyl = derive2 { name="shinyMethyl"; version="1.34.0"; sha256="1xbadc4xszcqh211r8z0wp417f17aczz834icli17mcsl996ln3a"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; + shinyepico = derive2 { name="shinyepico"; version="1.6.0"; sha256="00ma5la96w5djjcmz42jc6bzp8b9jk398y0s4sbqg6pkwcw235hd"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; + sigFeature = derive2 { name="sigFeature"; version="1.16.0"; sha256="0ivfi4cr2lw59cj0c3biqbbc1m3vnv480gmijfk9hx86g60wx5fp"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; + sigPathway = derive2 { name="sigPathway"; version="1.66.0"; sha256="0vb6v61ak8z3hx7d65lr1hrxk89n36j0zi3x0pp828khdyh3zvag"; depends=[]; }; + siggenes = derive2 { name="siggenes"; version="1.72.0"; sha256="0gis34s56y4xa61a9gywjwgd6525ywasa6r4xxhj3rshh1dz5jkv"; depends=[Biobase multtest scrime]; }; + sights = derive2 { name="sights"; version="1.24.0"; sha256="1qwm470ysc4jlp6pazpmyb8wpcisv2397328f0x37g5a5vilzx7c"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; + signatureSearch = derive2 { name="signatureSearch"; version="1.12.0"; sha256="1wzhli6da0x7126av9jx1qar04wlwx16krzspglfg0c1xagvm7sk"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix org_Hs_eg_db qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment tibble visNetwork]; }; + signeR = derive2 { name="signeR"; version="2.0.0"; sha256="0pygcq7xc15xmab71dxqsw14rg50mnszlnmx39wz6gp75m3n41c5"; depends=[ada BiocFileCache BiocGenerics Biostrings BSgenome bsplus class clue cowplot dplyr DT e1071 future future_apply GenomeInfoDb GenomicRanges ggplot2 ggpubr glmnet IRanges kknn listenv magrittr MASS maxstat nloptr NMF pheatmap PMCMRplus ppclust pROC proxy pvclust randomForest RColorBrewer Rcpp RcppArmadillo readr reshape2 rtracklayer scales shiny shinycssloaders shinydashboard shinyWidgets survival survivalAnalysis survminer tibble tidyr VariantAnnotation VGAM]; }; + signifinder = derive2 { name="signifinder"; version="1.0.0"; sha256="0gbhi9sklknnc4hp2w5wp2bj2rq0hmfqzcx3nqqf78fh00gz5bk5"; depends=[AnnotationDbi BiocGenerics ComplexHeatmap consensusOV DGEobj_utils dplyr ensembldb ggplot2 ggridges GSVA IRanges magrittr matrixStats maxstat openair org_Hs_eg_db patchwork RColorBrewer SummarizedExperiment survival survminer TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene viridis]; }; + sigsquared = derive2 { name="sigsquared"; version="1.30.0"; sha256="0xai7gk3kq669ngfdf7cpizaxv42sj50dzvc6xcqkzahn7l3y9pw"; depends=[Biobase survival]; }; + similaRpeak = derive2 { name="similaRpeak"; version="1.30.0"; sha256="0ncx8r62lvj0711f37szd9998cfpq5nsw6nq00xvkd781p3jf0gn"; depends=[R6]; }; + simpleSeg = derive2 { name="simpleSeg"; version="1.0.0"; sha256="1i4pzi66hlfmyd23mk3rck4zainaj3nsz2ksc3cvi2vrk0whm4ds"; depends=[BiocParallel cytomapper EBImage S4Vectors spatstat_geom SummarizedExperiment terra]; }; + simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.8.0"; sha256="130x5hy6jzglc6clwanh2kmhw567i802w620ffs3977kjfpjsjgy"; depends=[AnnotationDbi BiocGenerics circlize clue cluster colorspace ComplexHeatmap digest GetoptLong GlobalOptions GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; + sincell = derive2 { name="sincell"; version="1.30.0"; sha256="0dsl7p18nw7db7g7fx3l4x6mpj4krkxxacl8gddq91xiggjiib1l"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; + single = derive2 { name="single"; version="1.2.0"; sha256="0dszp2w7qxx4cnlm1bsy89dfmwqmg2fr337wqdbv42cgniyscxwa"; depends=[BiocGenerics Biostrings dplyr GenomicAlignments IRanges reshape2 rlang Rsamtools stringr tidyr]; }; + singleCellTK = derive2 { name="singleCellTK"; version="2.8.0"; sha256="03jiqf23f04cvzrrwq29kwd1x84dnv5nf41hbzmi3jd6rjzdnd5s"; depends=[AnnotationHub ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT enrichR ensembldb ExperimentHub fields fishpond ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly plyr R_utils reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq scuttle Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SoupX SummarizedExperiment sva TENxPBMCData tibble TrajectoryUtils TSCAN tximport VAM withr yaml zinbwave]; }; + singscore = derive2 { name="singscore"; version="1.18.0"; sha256="10hffcscysv8n1iijn2pqzkn9rhnh0xp07hl9b3688jzi1ydjj3k"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; + sitadela = derive2 { name="sitadela"; version="1.6.0"; sha256="1vqs5vdj12dll199cmsx6l1brfk36cgmv89lqxgf6bl0570gl6ls"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; + sitePath = derive2 { name="sitePath"; version="1.14.0"; sha256="06l55v7s8sh2gj687pdp93ffkaw57ad68sbkf616hdr199dfj1la"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; + sizepower = derive2 { name="sizepower"; version="1.68.0"; sha256="10wsvs54qdvwhpy865dlpjwzq7l1cnsg8hq1vs1jp36vspwwxzrg"; depends=[]; }; + skewr = derive2 { name="skewr"; version="1.30.0"; sha256="1dwckg1i55dgz6r19gkvpa1k7j2xdhzr0g408q951npi1hzq1hmb"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; + slalom = derive2 { name="slalom"; version="1.20.0"; sha256="02j7i5wkip4ybkc61alxq4fnlmmam4jilxbxzxnq9w5cwkaf776h"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; + slingshot = derive2 { name="slingshot"; version="2.6.0"; sha256="00h9iid2z9r55l4hlaa1q0nkbcfq0f7k2afkw4ymjwhm1b8yqj33"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + snapCGH = derive2 { name="snapCGH"; version="1.68.0"; sha256="1zxvl8mkby7yb5kppddag6k9w78d1fm6adx52h4cgrfckn28w64q"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; + snapcount = derive2 { name="snapcount"; version="1.10.0"; sha256="0y30ndqgld4c5ql8xp68xv3bi92njjqh9jcj2pxvkf7h9r3j8lad"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; + snifter = derive2 { name="snifter"; version="1.8.0"; sha256="0n39vlfkljckh9hpjwfyxbxd2747ss7y9nxb0hb0188p75q2dfkl"; depends=[assertthat basilisk irlba reticulate]; }; + snm = derive2 { name="snm"; version="1.46.0"; sha256="19gxs81i4ghwdjfi86xxsgxniha1wkmm2ivddcv5nhv90d3lai2j"; depends=[corpcor lme4]; }; + snpStats = derive2 { name="snpStats"; version="1.48.0"; sha256="14rkrav4iydc85194skdy33sk365pjmmvxxvzaxxh0k9ds009qwx"; depends=[BiocGenerics Matrix survival zlibbioc]; }; + soGGi = derive2 { name="soGGi"; version="1.30.0"; sha256="08prw50z7rdcys8gbc0sn55i8zkydijjpjcqpz5hw7bcdcqkbd37"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + sojourner = derive2 { name="sojourner"; version="1.11.0"; sha256="1s0iqzn65s9g4yymy059z122i9wvgkcb5718snzxhj7mkqjzwhhc"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang scales shiny shinyjs sp truncnorm]; }; + spaSim = derive2 { name="spaSim"; version="1.0.2"; sha256="0qp2qr2my4s8yxkzyhsajzvgy3w5zsx70z2kp44sfpgh52krijmx"; depends=[dplyr ggplot2 RANN SpatialExperiment spatstat_geom spatstat_random SummarizedExperiment]; }; + sparrow = derive2 { name="sparrow"; version="1.4.0"; sha256="04cshh2ilp5h5ls7zj018imgp1s8lw42i0x0vb171nrjnav7a8pl"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; + sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.22.0"; sha256="1c8dlfc1jmr3c4s1fnr31444mh92sn21bw8rjcr6andx4cmlryz2"; depends=[MASS MCMCpack optparse tmvtnorm]; }; + sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.10.0"; sha256="1rq23ra4nnz9dx0gsg9bh8zcbz6s0pyvjwq30xl6g4hbqz927xb0"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; + sparsenetgls = derive2 { name="sparsenetgls"; version="1.16.0"; sha256="1d4gpf919rl50cbnk849bgp7wz3iiczzg94v856z2r7d52f4qx86"; depends=[glmnet huge MASS Matrix]; }; + spatialDE = derive2 { name="spatialDE"; version="1.4.0"; sha256="0j6i3ky6i9hzib2zqszzjqm002k6ssy3c4nwk462l0bjy720whrk"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate S4Vectors scales SpatialExperiment SummarizedExperiment]; }; + spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.4.0"; sha256="0swqmynvhr1vdmrr465aja6zln19psai5ymv07kpakb5dxhfpsgp"; depends=[BiocFileCache BiocParallel data_table dplyr dynamicTreeCut edgeR flashClust genefilter ggdendro ggplot2 ggplotify gplots gridExtra grImport htmlwidgets igraph limma Matrix plotly rappdirs reshape2 rsvg S4Vectors scater scran scuttle shiny shinydashboard SingleCellExperiment SummarizedExperiment tibble UpSetR visNetwork WGCNA xml2 yaml]; }; + spatzie = derive2 { name="spatzie"; version="1.4.0"; sha256="040s8nmg5hr6rjb7cn2jxjihr8m80v1bdbcynikqxn6vw1cqr3h2"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; + specL = derive2 { name="specL"; version="1.32.1"; sha256="088fgp8lz6bnrx0ddn61x25vrp672q7cr0ky4x2vh31q4rd0j4zw"; depends=[DBI protViz RSQLite seqinr]; }; + spicyR = derive2 { name="spicyR"; version="1.10.5"; sha256="16rn43z6dih1ik7443b1pk1ccwfh0flncab6w6b1xvnn8p6nc8na"; depends=[BiocGenerics BiocParallel concaveman data_table dplyr ggforce ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors scam SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tidyr]; }; + spikeLI = derive2 { name="spikeLI"; version="2.58.0"; sha256="1wv6xybjf7m9rlylr2dbh5d9kx5vxc0l72y0581fj7l9352qgznh"; depends=[]; }; + spiky = derive2 { name="spiky"; version="1.4.0"; sha256="0pdsxidi0pwmwb94iv4l7346vsy9ccwqlr8l62c7ykgnvgn0v1ji"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; + spkTools = derive2 { name="spkTools"; version="1.54.0"; sha256="14nx30vhimx251w2fixbiis72wi2v8f9rcdbx18rkf6wg0iz2wbj"; depends=[Biobase gtools RColorBrewer]; }; + splatter = derive2 { name="splatter"; version="1.22.0"; sha256="179vyapbq9h25h2sv2ai3k94m8k8qn4winvic43dgw6wz15jcvab"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + splineTimeR = derive2 { name="splineTimeR"; version="1.26.0"; sha256="125g0sxlkj8f699f0arnq43inx9w4a05bb5jfn6nw9xiqv5pqgah"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; + splots = derive2 { name="splots"; version="1.64.0"; sha256="0malaw94s55qh7x7x98s472vnr2rgylgfvkrf0113h2l1v92nhmy"; depends=[RColorBrewer]; }; + spqn = derive2 { name="spqn"; version="1.10.0"; sha256="024zjcf2wwj2i85zkwdcqxxr88066dsbw2i44mmihk121yhf6qg4"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; + srnadiff = derive2 { name="srnadiff"; version="1.18.0"; sha256="1fkkbhdwrirq5z1435l3vi1xy324s5ywlg17npdk30k06xa9bpfr"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + ssPATHS = derive2 { name="ssPATHS"; version="1.12.0"; sha256="08wcv1jni9vhqnzvn41nsq9254px3qdf2wv60zkyrw8wpwkpyfy8"; depends=[dml MESS ROCR SummarizedExperiment]; }; + sscore = derive2 { name="sscore"; version="1.70.0"; sha256="07rzrac3v1lz4qas0zl6b9mjh5kvpd2wjgczc92dsl9x7ac4nn9i"; depends=[affy affyio]; }; + sscu = derive2 { name="sscu"; version="2.28.0"; sha256="0c1g5220bk5rrhngbjdix6bj03vd9vx62z3hmjkx3dq88p1wfkq6"; depends=[BiocGenerics Biostrings seqinr]; }; + ssize = derive2 { name="ssize"; version="1.72.0"; sha256="1cgh2yniw4mlbmfcmawpv9kf8fkjw6w8b58vkndwcpf6pz7bznbk"; depends=[gdata xtable]; }; + ssrch = derive2 { name="ssrch"; version="1.14.0"; sha256="0w4b7xg0qxsn7sn9skqa1qvjrmicr8baxlasaza1gjxlqngvj95c"; depends=[DT shiny]; }; + ssviz = derive2 { name="ssviz"; version="1.32.0"; sha256="1zplxlbd2f5h86dzgfw55q09jpd27fkaslswj6lrvavw9a89pmc8"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; + stJoincount = derive2 { name="stJoincount"; version="1.0.0"; sha256="0lphq2dff2dpbjixwf83dazb2fkncfn8jbaqsnhbskd8ansmydid"; depends=[dplyr ggplot2 magrittr pheatmap raster Seurat sp SpatialExperiment spdep SummarizedExperiment]; }; + staRank = derive2 { name="staRank"; version="1.40.0"; sha256="1f92yc538dvyqyxswrqwf1c0r8kaj45wpcpikrs9vr1g0s072lv5"; depends=[cellHTS2]; }; + stageR = derive2 { name="stageR"; version="1.20.0"; sha256="1layvv9akzijw2br9jzw6cwxn2rimha4m48fm8wn465n1nqcns0m"; depends=[SummarizedExperiment]; }; + standR = derive2 { name="standR"; version="1.2.0"; sha256="177kk3kcydwhb2ha9jxw0zlfzv93ga20pv7mkd1m5x0nwf400q8d"; depends=[Biobase BiocGenerics dplyr edgeR ggalluvial ggplot2 limma mclustcomp patchwork readr rlang ruv RUVSeq S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tibble tidyr]; }; + statTarget = derive2 { name="statTarget"; version="1.28.0"; sha256="1cd5rbwrf9ybh08zfb7wagr5p9172xrblf5k8kh9hd7v0qd8ax1j"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; + stepNorm = derive2 { name="stepNorm"; version="1.70.0"; sha256="0b26habd4gs0iy8vrq6mfink8yy93sn5hgq5jlx6c65rba8cs1nq"; depends=[marray MASS]; }; + strandCheckR = derive2 { name="strandCheckR"; version="1.16.0"; sha256="17ibvcff0qdjrwvbhjzphxc8xyk8hv0rn5kyfjnwzkqsqvippx9g"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + struct = derive2 { name="struct"; version="1.10.0"; sha256="0piz8kgxv1l78k5abvmzb42p0rc29j1r3iyj4izh2rpn0k8lpwpf"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; + structToolbox = derive2 { name="structToolbox"; version="1.10.0"; sha256="0gncd3f86067j9c8cwfnqrkpwizjm5irvhlnc0ibb3vzp3ymbr83"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; + subSeq = derive2 { name="subSeq"; version="1.28.0"; sha256="0q5snp5k3fdzp3bk125ix9ksnn5w81hp9bq7hx7vr5pkcr27y2jr"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; + supersigs = derive2 { name="supersigs"; version="1.6.0"; sha256="1dy4l467xj77bragcshwyildnlybx3g4gf1sds005yf6766kmjr9"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; + supraHex = derive2 { name="supraHex"; version="1.36.0"; sha256="060z35h4d48xq3pv3i00pa8m5vjg15qama8s2pd5vwgnyi0pv2l1"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; + surfaltr = derive2 { name="surfaltr"; version="1.4.0"; sha256="0lbdcx88j3icrfg5py3iarmjrb3a6ybzkdvq25q51qzzlwixzll7"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; + survcomp = derive2 { name="survcomp"; version="1.48.0"; sha256="0a6sqzgvxfgjr6yrpv1vaza6yni6n1gminr2g0912rhkaz1c7z6z"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; + survtype = derive2 { name="survtype"; version="1.14.0"; sha256="0z3vgiryafqsqwxk5gzpkp7svkhxyqvl2sbh5vvfpdb5jil93dgg"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; + sva = derive2 { name="sva"; version="3.46.0"; sha256="0c1b7w4rvyy8i0jygj8g9xgf46rmgx8bpdlp2x4fdjr9xsrsl23g"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; + svaNUMT = derive2 { name="svaNUMT"; version="1.4.0"; sha256="0vhl1d8b4ys1nd44pf5z6kr4gl5cww9ml8pnf7fphzz6d0r8hg89"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + svaRetro = derive2 { name="svaRetro"; version="1.4.0"; sha256="04z604mkpzmbflf34338011dmbwzhws294jzc06akxg98220airv"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + swfdr = derive2 { name="swfdr"; version="1.24.0"; sha256="0svvmssp4jlhcs8agihpc4hlar83d5czrlp7l5xlzf4cagzx2nv9"; depends=[]; }; + switchBox = derive2 { name="switchBox"; version="1.34.0"; sha256="0mi9wwlv8rlcf4lsmingnb7d195ji19s264kfdsp5gpc7vg9arli"; depends=[gplots pROC]; }; + switchde = derive2 { name="switchde"; version="1.24.0"; sha256="0j1a1a1zg0f9xirbva42w48k06b9kbk340jygcj3gp18ii207wql"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; + synapsis = derive2 { name="synapsis"; version="1.4.0"; sha256="127yx1a56r0fh8n9ir2zlhxs2fj47pfdxn8dssdmns0d77rhnnvc"; depends=[EBImage]; }; + synapter = derive2 { name="synapter"; version="2.22.0"; sha256="1zl8nqyaqrp424k0a06s4h7ffaxixhf1i39zx3kl3bhvayqmqviw"; depends=[Biobase Biostrings cleaver lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; + synergyfinder = derive2 { name="synergyfinder"; version="3.6.0"; sha256="1b07cqv3jqsz5xpins63maalwjljj21wps79d029r9xsppv1271y"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; + synlet = derive2 { name="synlet"; version="1.28.0"; sha256="12hmzwfd31nhnxcjxcpyw5q5rsgky99q446qk52dy7vqy5achld3"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; + syntenet = derive2 { name="syntenet"; version="1.0.3"; sha256="0pl0gxxjwxqv8gq6a0fkq32c4vq4cpp3aa77cmc1r4bqz0laykr0"; depends=[Biostrings GenomicRanges ggnetwork ggplot2 igraph intergraph networkD3 pheatmap RColorBrewer Rcpp rlang rtracklayer testthat]; }; + systemPipeR = derive2 { name="systemPipeR"; version="2.4.0"; sha256="0lwc4d4k6qmnwsh8fpp5rmiaxhzwl2f0dhzs23ska5xy04466r49"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; + systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.8.1"; sha256="193c7si0jkkfz2p3sd8am4mga721mkxxf2wyv6b7yqarhvi5cdc2"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; + systemPipeTools = derive2 { name="systemPipeTools"; version="1.6.0"; sha256="0qj8c652ms4ja4bjp57gx75xr4m3haj9bh3q337cqqr0wk02gn80"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; + tLOH = derive2 { name="tLOH"; version="1.6.0"; sha256="1clpyiz04scsknvq5y1kk8ipx1a9ljrb1127wrsjvrgj6q4fjilj"; depends=[bestNormalize data_table depmixS4 dplyr GenomicRanges ggplot2 MatrixGenerics naniar purrr scales stringr VariantAnnotation]; }; + tRNA = derive2 { name="tRNA"; version="1.16.0"; sha256="12vw3wj8gn827vc1hwfqsm4cp4qs2k3vy17y4i4k33z9iwkvlsxh"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; + tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.16.0"; sha256="1zmqdh9va0sxzf9jfngrhh5kdbkshz0n5x7fqf23anyhwwzr8z1p"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; + tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.18.0"; sha256="1hnd953pbhzx6b3hqn8mx5d6bv43pc6dw3n7a9z393rkydn21wdg"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; + tRanslatome = derive2 { name="tRanslatome"; version="1.36.0"; sha256="1w2fii837md64pg4d79shxmk658vi0dkqggl6r6b11f6m2ja946v"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; + tanggle = derive2 { name="tanggle"; version="1.4.0"; sha256="11mhavfy1fscndz5yiihxb9davmwvxslwj6ph7251787h1sr337g"; depends=[ape ggplot2 ggtree phangorn]; }; + target = derive2 { name="target"; version="1.12.0"; sha256="135hphjpp8326gbsl2j115082pnazpr6n5rj9ppync6bbl1iisq1"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; + tenXplore = derive2 { name="tenXplore"; version="1.20.0"; sha256="0di434q3xch7hb93cnaa7zac4s8jx0k7wbvf6rl0j0rk35zdp3lx"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; + ternarynet = derive2 { name="ternarynet"; version="1.42.0"; sha256="01z262509vka2sfhzccwlmgi5frf56x07gbsan762hgvrcscg8jb"; depends=[BiocParallel igraph]; }; + terraTCGAdata = derive2 { name="terraTCGAdata"; version="1.2.0"; sha256="1yfvqdsgd3apan43cbjin95mwnbym1m0f1c8x212k277cc3rm22r"; depends=[AnVIL BiocFileCache dplyr GenomicRanges MultiAssayExperiment RaggedExperiment readr S4Vectors TCGAutils tidyr]; }; + tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.8.0"; sha256="0kkxd64rlksw7l0hw53ckc9mhsvsb0yj8w078bh4rd16iqk3jnnc"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect ttservice]; }; + tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.8.0"; sha256="0y7k0svcjx0lvxn3jw8g7vkrvwhvj9b7mhb0igavad1rc5pc54f3"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect vctrs]; }; + tidybulk = derive2 { name="tidybulk"; version="1.10.0"; sha256="1n31wqad7wdfyfy1mcjsq68rlyyyd15srcrvz6ylp2pi8nbwxfly"; depends=[crayon dplyr GenomicRanges lifecycle magrittr preprocessCore purrr readr rlang S4Vectors scales stringi stringr SummarizedExperiment tibble tidyr tidyselect]; }; + tigre = derive2 { name="tigre"; version="1.52.0"; sha256="1cj4yqdad1xs8k682qx92b03nbyx51qdqsf7y90bll3z51xhwvdq"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; + tilingArray = derive2 { name="tilingArray"; version="1.76.0"; sha256="19bkgblpkcp3w3sdyn82c37gkz1sv3r4d546zpbnh36q2pi3l4zd"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; + timeOmics = derive2 { name="timeOmics"; version="1.10.0"; sha256="1szhdd29gfa7ah7yf683d69s2w0w6r8nh3kc7fii3vnyqspspb19"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr purrr stringr tibble tidyr]; }; + timecourse = derive2 { name="timecourse"; version="1.70.0"; sha256="0lq5haikg76vbrf3jmyxx6s7kglwaabdbwza2sd6zg84lbpyw3nv"; depends=[Biobase limma marray MASS]; }; + timescape = derive2 { name="timescape"; version="1.22.0"; sha256="0i0v10gaj47dw53am4z1rdhzbdfh8nybgdb204h928jfnc1ag20f"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; + tkWidgets = derive2 { name="tkWidgets"; version="1.76.0"; sha256="09zhzm42h814srqzkzdswp4y450j24166r87szlimzcdjm38xnkj"; depends=[DynDoc widgetTools]; }; + tomoda = derive2 { name="tomoda"; version="1.8.0"; sha256="1sfn1l0bys7bmfglhn73jw7qzniabgv3ffbns4ci17d29zzf0akk"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; + tomoseqr = derive2 { name="tomoseqr"; version="1.2.0"; sha256="1x583lzmf2dslvm2a103i7k5gkd6spavnrrxxp6v35dmj1g531fg"; depends=[animation BiocFileCache dplyr ggplot2 plotly purrr readr shiny stringr tibble]; }; + topGO = derive2 { name="topGO"; version="2.50.0"; sha256="1ripdn7mcabh96bm4p807dbwj7jv05a54kss4snhz84svqq383m4"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; + topconfects = derive2 { name="topconfects"; version="1.14.0"; sha256="00bpbkwafvcak847grg2ypmnagwr2imdg4vmsm3f5s3qd97ra69f"; depends=[assertthat ggplot2]; }; + topdownr = derive2 { name="topdownr"; version="1.20.0"; sha256="1m5213k4drmicswjsphzz7m9d93275vlwy1fzp2iiaqjr7w12b6a"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; + trackViewer = derive2 { name="trackViewer"; version="1.34.0"; sha256="1gd95f947lw4yp8l9azlfg5hylg6bxfc10dxw5cgpsacny9lnbkr"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rcpp Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales]; }; + tracktables = derive2 { name="tracktables"; version="1.32.0"; sha256="1cp9n1sa028xh6265gn83xjy6bqc05gnghdr6lnwmb75pv7sliyg"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; + tradeSeq = derive2 { name="tradeSeq"; version="1.12.0"; sha256="0wkbjhwqk094nd5h6sl2nw5jp5vmkh9why635l8qkqmxa2jm3gh0"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; + transcriptR = derive2 { name="transcriptR"; version="1.26.0"; sha256="03v8xn777vyma82ma5dzk07i1g7406cvsybdz4bf6hj8bgx5ynw7"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; + transcriptogramer = derive2 { name="transcriptogramer"; version="1.20.0"; sha256="0m9kqshmvfyj30ssxp9qx15780zpmxsq7vgidmz66pqv36cn06vh"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; + transformGamPoi = derive2 { name="transformGamPoi"; version="1.4.0"; sha256="1ihk1bml8kjzhfx52zj8xxbrqb12p2jphymxi7rh0df038khj4sr"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics Rcpp SummarizedExperiment]; }; + transite = derive2 { name="transite"; version="1.16.0"; sha256="0kgh4npxfkbmd525pmpf08247wrdary863qhvmkwc3z7i91973sj"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; + transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.8.0"; sha256="0r5cc3r2x1gjr5f6wkwk8jw812f6asfk6r5qr9wl5iad4h1i2d20"; depends=[dplyr KEGGREST purrr RCy3 tibble]; }; + traseR = derive2 { name="traseR"; version="1.28.0"; sha256="0pya0d9mng8lizc0x08pai6bjvaxj740h903p4y9b1fshl27r6mk"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; + traviz = derive2 { name="traviz"; version="1.4.0"; sha256="17nazzn7h5hmmrb6dfxybnfj4yhc0qikn32q7ari7v5bg6fz6bky"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; + treeio = derive2 { name="treeio"; version="1.22.0"; sha256="1xl8497ya79hlp3v3fihnz9grwni29v6860i273lrpcljv8868l9"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; + treekoR = derive2 { name="treekoR"; version="1.6.0"; sha256="1ii65rd30zcwsi782wjklwhhg5frr0ajb1cfmfcpprrh9841fmin"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; + trena = derive2 { name="trena"; version="1.20.0"; sha256="0c2m825p2fggr8y6zmqa2nlhvh28k6miga6812900fcc1r82fv2n"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 WGCNA xgboost]; }; + tricycle = derive2 { name="tricycle"; version="1.6.0"; sha256="0b5agqhywg23zxf0f9s1vfbzs7s7ijf9c716s7hwjprxfdz5znvw"; depends=[AnnotationDbi circular dplyr GenomicRanges ggnewscale ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; + trigger = derive2 { name="trigger"; version="1.44.0"; sha256="0h9zv5ak3arp436ivxqz7xmfanqk6m8k7xs0y5c6586fjzrhz7y5"; depends=[corpcor qtl qvalue sva]; }; + trio = derive2 { name="trio"; version="3.36.0"; sha256="1gccqcyrq5di7763q4mpl28fj64bpjm5s1vwjy5cwkhhkp90kr23"; depends=[LogicReg siggenes survival]; }; + triplex = derive2 { name="triplex"; version="1.38.0"; sha256="1zd0r8xn8ri357x95cbd67vcsvjicq8fzqj0gp18v70vq22k331i"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; + tripr = derive2 { name="tripr"; version="1.4.0"; sha256="0kwmi1s9v0rwpf9qgdah8s5c93f17qcs8s5hhhd2z2rh9lm7sgx3"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr pryr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; + tscR = derive2 { name="tscR"; version="1.10.0"; sha256="1i372yw3rf1s1zr5dn7p2w9p0qgmghl1b1is8wq20g8zz3hf0aka"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges kmlShape knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; + ttgsea = derive2 { name="ttgsea"; version="1.6.3"; sha256="1c4ngsrczca10fnlrnr8n1h55j6g1xj3laklr8aahhgdq5isajr7"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; + tweeDEseq = derive2 { name="tweeDEseq"; version="1.44.0"; sha256="09rdcax78vbcrl7q7i457n18jk298lxagxm0v89x3s6izvqr025p"; depends=[cqn edgeR limma MASS]; }; + twilight = derive2 { name="twilight"; version="1.74.0"; sha256="1lia4q637ngh47zlr5g18isp9acrb4d9g1fzck2akldqa0pnn66r"; depends=[Biobase]; }; + twoddpcr = derive2 { name="twoddpcr"; version="1.22.0"; sha256="01bfphc5hi8mk5j72f95pdqbi28bj4nfdvr0lzp9xs38qfnb80h7"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; + txcutr = derive2 { name="txcutr"; version="1.4.0"; sha256="05skv6ks1gq2wbx9gm5c3gk5k77vy248brhcay43ni900xwn10zi"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; + tximeta = derive2 { name="tximeta"; version="1.16.0"; sha256="0v1s5ssinyrizpg2i88dn2ckzs4i16hjfg2pzxhal3ypsiw24qna"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; + tximport = derive2 { name="tximport"; version="1.26.0"; sha256="1w1m6r85a5nvcfxbkq5dmczaar8vf3vbrgrmxqkjqhlpcq58z5ng"; depends=[]; }; + uSORT = derive2 { name="uSORT"; version="1.24.0"; sha256="1fhhl00qdj7ihvb3ia2nd215m1ylbaszpyq1w7bmgv89v5ghhsgf"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; + uncoverappLib = derive2 { name="uncoverappLib"; version="1.7.0"; sha256="1fsn5wpknx1f6sj12x9q456iqi68kwgcqzkk3343hfg185rnn8sh"; depends=[BiocFileCache BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools S4Vectors shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.34.0"; sha256="0zkqr1s8gagwsh33kzp0n2n7ff5jhfn6a60gvab5spk7vr76j442"; depends=[BiocGenerics HTqPCR]; }; + universalmotif = derive2 { name="universalmotif"; version="1.16.0"; sha256="1vfg703wxbgxw2cwqqz3kfyqj4za5n3skxxzi8c31azamg4hxs18"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; }; + updateObject = derive2 { name="updateObject"; version="1.2.0"; sha256="13rq1hv0rg8cj3z8d2b9mfih5sybicb4razv8vaic1i7c7sbypwf"; depends=[BiocGenerics digest S4Vectors]; }; + variancePartition = derive2 { name="variancePartition"; version="1.28.0"; sha256="1mn91r0yrhz08m3vs2h3i35rcbxyc7sdfknmk6vcw1z75znjsnpl"; depends=[aod Biobase BiocParallel doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix pbkrtest progress Rdpack reshape2 RhpcBLASctl rlang scales]; }; + vbmp = derive2 { name="vbmp"; version="1.66.0"; sha256="1gfvk1g9q73p9z91zasblya1w218yhzawp6dgyf0lnldx36kpvc9"; depends=[]; }; + velociraptor = derive2 { name="velociraptor"; version="1.8.0"; sha256="07nwx9cahia4a6g15xhccdlwxnhvwq46dy2hqcqqzydgpsapa6wv"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; + veloviz = derive2 { name="veloviz"; version="1.4.0"; sha256="01f2d28h0gnh38g50yphmg3aqy1ya2ysj1xabs2a6y3wnqzrahzk"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; + vidger = derive2 { name="vidger"; version="1.18.0"; sha256="086q79hf689hslsrxzzif9f7cwkm80djfl0vn75cd0xbhsqpsayf"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; + viper = derive2 { name="viper"; version="1.32.0"; sha256="11i2q9nakh534nx2l736id7k1yqhk7jpg32sbfl4vrnh398q86h6"; depends=[Biobase e1071 KernSmooth mixtools]; }; + vissE = derive2 { name="vissE"; version="1.6.0"; sha256="1wfdrqvsqxc3jllmqbrrcwy7737kifxzmgrlr220zfzhc5hf4888"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; + vsclust = derive2 { name="vsclust"; version="1.0.0"; sha256="05lzdrjira4ck0b3jjfs3n7fhd8p65pvy4p96241j0lng1q9bwgm"; depends=[limma matrixStats MultiAssayExperiment qvalue Rcpp shiny]; }; + vsn = derive2 { name="vsn"; version="3.66.0"; sha256="1k77rg5jf646m1pn59qhlsbb9fzhlpnrj4dzxagknawcbpnnjl0z"; depends=[affy Biobase ggplot2 lattice limma]; }; + vtpnet = derive2 { name="vtpnet"; version="0.38.0"; sha256="17b744wiknlgwq3c404ijnd3nqp1hran2v315gis0y20kb9xbjm3"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; + vulcan = derive2 { name="vulcan"; version="1.20.0"; sha256="01cz2kv9ayb0819kqc65qhjs9ny3549a8af5c1lwrqxss8bg9s6b"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; + waddR = derive2 { name="waddR"; version="1.12.0"; sha256="00yjkphzj7yfz57d6i64w75x4mc8i6sjvb0v0jjmkg2vpbmzbfnk"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; + wateRmelon = derive2 { name="wateRmelon"; version="2.4.0"; sha256="0m8mra0jb6sgm13dagqn1pj81dha4dyj65xc6r2sh0yc3pyjb20h"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; + wavClusteR = derive2 { name="wavClusteR"; version="2.32.0"; sha256="1z7y3wnrqr2xqrvs2xwmv419aqlizq0az17dpxmj1hg9knyls1bx"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; + weaver = derive2 { name="weaver"; version="1.64.0"; sha256="1ykdr01sichl615m6m5dbaarsz4b3fg59fd9cg3gicp01nvba6mz"; depends=[codetools digest]; }; + webbioc = derive2 { name="webbioc"; version="1.70.0"; sha256="1mgag0gjavpld4xxlpfafq6fhzjafxgqyf677xrm6ff26z6z1ja2"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; + weitrix = derive2 { name="weitrix"; version="1.10.0"; sha256="1mh2847rxs35n1dmzpx0yjaszhqb67ff2qdzcn0k5ki2acm0f4l5"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; + widgetTools = derive2 { name="widgetTools"; version="1.76.0"; sha256="1p93dzf7w9z1ria0f8n32aymam9abxyg50ngnh7s6a8n24mvvjy5"; depends=[]; }; + wiggleplotr = derive2 { name="wiggleplotr"; version="1.22.0"; sha256="1yp9siy4249wkwd0yy5lkwp79xir53f8mihiv4dkir8fscgampl3"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; + wpm = derive2 { name="wpm"; version="1.8.0"; sha256="05zpj0i4741xn1g0yhkq3mg9zjppfryrfc47pxnys9bjfij0az52"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; + wppi = derive2 { name="wppi"; version="1.6.0"; sha256="0kc3nkim8fhajhai5bwzwirsg74zbdib3dd7cfr75ddwd8myc913"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; + xcms = derive2 { name="xcms"; version="3.20.0"; sha256="1gj0nd90c6ykwn1n7xndzrgfv5dzy0y2lh3bf8120nacccgxl2qx"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; + xcore = derive2 { name="xcore"; version="1.2.0"; sha256="195gcnpyqn2slvjnj0cvsc79csj505ky8g3pghhjijdjybpbqg4z"; depends=[DelayedArray edgeR foreach GenomicRanges glmnet IRanges iterators magrittr Matrix MultiAssayExperiment S4Vectors]; }; + xmapbridge = derive2 { name="xmapbridge"; version="1.56.0"; sha256="0wxr3db2daj4xlr9df6iqwm00m71kln7rhqnq2ckdsricblanhs7"; depends=[]; }; + yamss = derive2 { name="yamss"; version="1.24.0"; sha256="0bh06mncjrkihz2j29hasbipfl50x7393wshdcnlxrs5rrq73r0n"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; + yarn = derive2 { name="yarn"; version="1.24.0"; sha256="0sqbll7ja0qr8r28dqmydmkvg4ijfm7z8hbrsrz3xxdan70bmd2r"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; + zFPKM = derive2 { name="zFPKM"; version="1.20.0"; sha256="1wsmv4fld4s7l0qh84ghizq8k388ybdz9hzzis2gn1nn57q1c7wi"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; + zellkonverter = derive2 { name="zellkonverter"; version="1.8.0"; sha256="0b14v6lyhfapmfj8j729k5cmgxc4df6wsk2rds0q4y6z4hiwgmxy"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; + zenith = derive2 { name="zenith"; version="1.0.0"; sha256="19kwldj2wxpzyxdjh4ls86li2v477swl6zxkzr9rl7r183z4b5ha"; depends=[EnrichmentBrowser ggplot2 GSEABase limma msigdbr progress Rdpack reshape2 Rfast tidyr variancePartition]; }; + zinbwave = derive2 { name="zinbwave"; version="1.20.0"; sha256="1356ms5y6fg7ndn8hvs6zsyr0jg6ah7a56qxd2x4xgyjj3xcakbv"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; + zlibbioc = derive2 { name="zlibbioc"; version="1.44.0"; sha256="0c75mf0iw6bgwrn3zxpz1dz03aw7p6a1mfhssk6i1mp24avic9lb"; depends=[]; }; ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.24.0"; sha256="1sp3f72rzlr822dxx42bswynrwwfx6f520hdhfdikqp13p2y4044"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; broken = true; }; ALPS = derive2 { name="ALPS"; version="1.5.0"; sha256="1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p"; depends=[assertthat BiocParallel ChIPseeker corrplot data_table dplyr genefilter GenomicRanges GGally gghalves ggplot2 ggseqlogo Gviz magrittr org_Hs_eg_db plyr reshape2 rtracklayer stringr tibble tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; }; Autotuner = derive2 { name="Autotuner"; version="1.7.0"; sha256="0k07gs6bnxs0894iqi1lhk96mifjcdf68bv4q9fjv50nzqpzqd8l"; depends=[assertthat Biobase cluster entropy MSnbase mzR RColorBrewer scales]; broken = true; }; + BioPlex = derive2 { name="BioPlex"; version="1.2.3"; sha256="0cn0x6ij2a3xy61bq0qy5amp0ipj4r4shh7g0vlwbkrclj9w347r"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; broken = true; }; + CAnD = derive2 { name="CAnD"; version="1.27.0"; sha256="14x0m5iv7dm1iii5zsny9wnf4j5ddh0kij2jm658r3i4wnc99mkb"; depends=[ggplot2 reshape]; broken = true; }; CompGO = derive2 { name="CompGO"; version="1.28.0"; sha256="16nlrk9wbxj51y8s7s58mdhpi70ghfacxi283406gwya3cm79f0n"; depends=[GenomicFeatures ggplot2 pathview pcaMethods reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; broken = true; }; CountClust = derive2 { name="CountClust"; version="1.21.0"; sha256="17px9jkpjwz0j2f5h8xv52wh24ilqvlb6dvczjc36lb7mq4cw3sq"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; broken = true; }; + CytoTree = derive2 { name="CytoTree"; version="1.6.0"; sha256="1dsdhwjkd3ngnw50fs6vz048afk47r95vhi0wqj8sip11nhndkd8"; depends=[Biobase BiocNeighbors cluster destiny flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; broken = true; }; EasyqpcR = derive2 { name="EasyqpcR"; version="1.31.0"; sha256="0lb2px789668fr1gxghycy7lbdkpwmippv6xmmwws6rbanvfd6v4"; depends=[matrixStats plotrix plyr]; broken = true; }; + EnMCB = derive2 { name="EnMCB"; version="1.8.2"; sha256="1kna7s4rz5mlaj7vwc0mrzaziadvai7zq8ajiy4jya8xw78llyw4"; depends=[BiocFileCache boot e1071 ggplot2 glmnet igraph Matrix mboost rms survival survivalROC survivalsvm]; broken = true; }; FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; broken = true; }; FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.23.0"; sha256="04lk2cahf6zqnhpzh0zwas4vmvaz4kcik9ri65bs9d9ximzjam91"; depends=[jsonlite RCurl XML]; broken = true; }; + GAPGOM = derive2 { name="GAPGOM"; version="1.11.0"; sha256="0sl97w5zx4zdrdbcwayqyvgxspaxpbils3mpsrim0zlspjrjcy6z"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; broken = true; }; + GCSConnection = derive2 { name="GCSConnection"; version="1.7.0"; sha256="1psmw3825whyzvbzqpqksgcl09b6kfyb8k5vny6ljkjbac1jzvnf"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; broken = true; }; + GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.6.0"; sha256="0qk8xyg06f71y4r1q1zpcj89irh9i6cd9z6nqlx635x8if84sh6d"; depends=[]; broken = true; }; GeneAnswers = derive2 { name="GeneAnswers"; version="2.36.0"; sha256="1f8q3hi913khyy1cc3yp2635gaik47alsqmhi0mi24cy340faplz"; depends=[annotate Biobase downloader Heatplus igraph KEGGREST MASS RBGL RColorBrewer RCurl RSQLite XML]; broken = true; }; GenoGAM = derive2 { name="GenoGAM"; version="2.11.0"; sha256="058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; broken = true; }; - Herper = derive2 { name="Herper"; version="1.3.0"; sha256="038cavnbz7gvmv9mpnf88n8dzrg7yl306y68zsq5hpkrj6qax9vr"; depends=[reticulate rjson withr]; broken = true; }; + IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.31.0"; sha256="1w7zxsvmcrz8cj8g8xa1vqbzfycdhgsclhcjmkqjw1hwz6fp3xgn"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust RColorBrewer Rcpp relimp tkrplot xlsx]; broken = true; }; + MACPET = derive2 { name="MACPET"; version="1.15.1"; sha256="0742i3fxg2793lhgpxb4whh6mwvzd4bn86ykd0rv8sgilxyq5zsl"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; broken = true; }; MSEADbi = derive2 { name="MSEADbi"; version="1.2.0"; sha256="1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf"; depends=[AnnotationDbi Biobase DBI RSQLite]; broken = true; }; MSGFgui = derive2 { name="MSGFgui"; version="1.28.0"; sha256="0dkj2nbv5xv4v4bbmf91av0ryh9pxdfp7fmbqlma4xyf1r7zmx4c"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; broken = true; }; MSGFplus = derive2 { name="MSGFplus"; version="1.28.0"; sha256="1k0qm049gk4gjhd88zhxxrpc944r7ndq8dys08ai2kbaqignvb7y"; depends=[mzID ProtGenerics]; broken = true; }; MSstatsTMTPTM = derive2 { name="MSstatsTMTPTM"; version="1.1.2"; sha256="16qnddwhwhjjfr5akdrmp93gkxq2r41s82hb1blbz47lwbj5kaj5"; depends=[dplyr ggplot2 gridExtra MSstatsTMT Rcpp reshape2 stringr]; broken = true; }; - MethCP = derive2 { name="MethCP"; version="1.7.0"; sha256="1smhwmrgckgivf6xfk54sz197cw1mar95chzkrfpf4wxw3jzbbkn"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; broken = true; }; + PSICQUIC = derive2 { name="PSICQUIC"; version="1.34.0"; sha256="0gkkxxbc2a7cin92qwn1masqfigyz9s4fhyy2daa17r3ckk4ccgx"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; broken = true; }; PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.22.0"; sha256="0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d"; depends=[igraph jsonlite pcaMethods shiny]; broken = true; }; + PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.11.0"; sha256="1miw8rj1zn1xv97dkgs66k9g21i6gp3j2m1l1akysskczgam3i2c"; depends=[BiocParallel biomaRt brglm data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; broken = true; }; ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.24.0"; sha256="0qs5hbx7pww7qxxaimp2xqvs3lwcd41ndls0xcvvlk7pnp4i4sk8"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; broken = true; }; + PubScore = derive2 { name="PubScore"; version="1.8.0"; sha256="18bmzvv6mxrdlh297i29q24vi5rc4x2mjaryi5asiki186x0hy8d"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; broken = true; }; RGalaxy = derive2 { name="RGalaxy"; version="1.38.0"; sha256="0vfsn8cj5c8n58ra1qz85gwmm1747lm3xdz17m20f73g8q78nymd"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; broken = true; }; - RNASeqR = derive2 { name="RNASeqR"; version="1.12.0"; sha256="1f2rrk4lb8mawgy6pzkpdmjp85pl23mb89b45ay54jp28j16dgr5"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; broken = true; }; + Rgin = derive2 { name="Rgin"; version="1.15.0"; sha256="1x5zj2d5rvsr2xh0ifpnrys9v91dal1xxhv5mmk16rs8wzwqpqba"; depends=[RcppEigen]; broken = true; }; RmiR = derive2 { name="RmiR"; version="1.49.0"; sha256="16nwh4a97qvyicm4f102xs52lx8cld0b80fykgil86kkd6v8zlja"; depends=[DBI RmiR_Hs_miRNA]; broken = true; }; + Rnits = derive2 { name="Rnits"; version="1.29.0"; sha256="0m6afic9p7synmngkn7zyf53saqnrmgydjbk41k0w814i46dcd6h"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; broken = true; }; + RpsiXML = derive2 { name="RpsiXML"; version="2.38.0"; sha256="0x4nph4xss4piq4fgijjjj33yrqqfdbsgn9wvqy17nglvz5gi7bi"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; broken = true; }; SLGI = derive2 { name="SLGI"; version="1.54.0"; sha256="03jwdq4k44rys3f773c6l985a6v1bacbdghw97p0qpwspmzra8rs"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice]; broken = true; }; ScISI = derive2 { name="ScISI"; version="1.65.0"; sha256="0q3bbfsink5d8xslhp129qwvlq5mdzw8zkv9msd0q8qmkclsbiz1"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; broken = true; }; + Sushi = derive2 { name="Sushi"; version="1.34.0"; sha256="0adswrbzd93rhy3q56ypwkrk6155vd4zxapvznswyjlxp8ha813q"; depends=[biomaRt zoo]; broken = true; }; SwimR = derive2 { name="SwimR"; version="1.29.0"; sha256="0n58x3i4k3icvhg8z60zlhpszv8bb9pain07nl9rszyvmpi71vg2"; depends=[gplots R2HTML signal]; broken = true; }; TSRchitect = derive2 { name="TSRchitect"; version="1.20.0"; sha256="1v9zz8ny9rwkyz98cv49l9ilh68h8mvm2x44n8i8rvjayc50zi9i"; depends=[AnnotationHub BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges readxl Rsamtools rtracklayer S4Vectors SummarizedExperiment]; broken = true; }; + TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.13.0"; sha256="0bdpxxr739qdg92qabfx122k9f43vw2hyxp4yxqlbp37vzgcdf2c"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; broken = true; }; XCIR = derive2 { name="XCIR"; version="1.7.0"; sha256="0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; broken = true; }; affyPara = derive2 { name="affyPara"; version="1.51.0"; sha256="01165f84snc3ksk0ghw631i2l5jklp4n826jwy5926wvxy3zlwz0"; depends=[affy affyio aplpack snow vsn]; broken = true; }; alsace = derive2 { name="alsace"; version="1.30.0"; sha256="17adr64g3l2syj0shi57nrvx105w7wrkiqm0qp3hwlk1ivmnadzn"; depends=[ALS ptw]; broken = true; }; - coexnet = derive2 { name="coexnet"; version="1.15.0"; sha256="1h3l7rjk757qbddyg0p8l21h8z3i4n3ml295lmavszsm9knyc2fk"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; broken = true; }; + caOmicsV = derive2 { name="caOmicsV"; version="1.25.0"; sha256="10i4imjihmssdwfys21fsqng8zfp7sxzkc58m8qmnh6s5sccb3sz"; depends=[bc3net igraph]; broken = true; }; + clonotypeR = derive2 { name="clonotypeR"; version="1.34.0"; sha256="15nnj6c23bcnln1xsmxs7f13m13lvn6did7lvp7ij8gcb0vg2g6q"; depends=[]; broken = true; }; + ctgGEM = derive2 { name="ctgGEM"; version="1.7.0"; sha256="0hmapz96r024r3bws1wf0spd0i81viyma859y9nn93jrwxscrcdb"; depends=[Biobase BiocGenerics igraph Matrix monocle sincell SummarizedExperiment TSCAN]; broken = true; }; + diffloop = derive2 { name="diffloop"; version="1.24.0"; sha256="0v0jg9y08xzw775x2lm82ig1ag4wjf4z2l6a66zmk6qbn59dwj1g"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; broken = true; }; dualKS = derive2 { name="dualKS"; version="1.53.0"; sha256="16cfcylmmcj8x2808529lbpm7qbbrxygic0jkaglhqcdxgrqw3rw"; depends=[affy Biobase]; broken = true; }; + flowUtils = derive2 { name="flowUtils"; version="1.59.0"; sha256="11x362dqb9mjlsbq6g1qkb8hhnkvm22z5s3wkgmpyy9kyifjkm26"; depends=[Biobase corpcor flowCore graph RUnit XML]; broken = true; }; + gaia = derive2 { name="gaia"; version="2.39.0"; sha256="023mw2dy6dni7h7a1ild1y6l741kp9bmjzzfyi70jipji1jig4pa"; depends=[]; broken = true; }; + genphen = derive2 { name="genphen"; version="1.24.0"; sha256="1m60qagcxviix4zjzfhvrwchbjq2clss6mivb8q07bcq369yw1b8"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; broken = true; }; + gpart = derive2 { name="gpart"; version="1.13.0"; sha256="1518wjkaw22ckgpwl6si83bhijvib0r0kgs9s4das41f0ygi92sd"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; }; + gprege = derive2 { name="gprege"; version="1.39.0"; sha256="12yjyb7a7jc86hdi3a3cavqxfzkhmds1m2vigzw5ihhx6028pa78"; depends=[]; broken = true; }; + inveRsion = derive2 { name="inveRsion"; version="1.43.0"; sha256="0h2q10xf4x22hy7780w4pvq488921wzjngly8qcc97sa8iacssk3"; depends=[haplo_stats]; broken = true; }; + iteremoval = derive2 { name="iteremoval"; version="1.15.1"; sha256="0bwl8lzxvf5azwyacv9x16l4kyi8l00xny2s83gp2kng5gyz8602"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; broken = true; }; methyAnalysis = derive2 { name="methyAnalysis"; version="1.34.0"; sha256="05k3n7iy5ijidbnblbqqas8dsj8drwzbhyrbs8wl1ypkg51havi0"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; broken = true; }; + networkBMA = derive2 { name="networkBMA"; version="2.35.0"; sha256="0xa0b977apbr6p9kqk38582af635kp99csj32bsn2bf8pjsmd4d2"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; broken = true; }; perturbatr = derive2 { name="perturbatr"; version="1.13.0"; sha256="0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; broken = true; }; + phemd = derive2 { name="phemd"; version="1.12.0"; sha256="0nn0qgb0rz4j2xsjq0wydjhg5pmf2ra67rm9fdm4m1izmzwa0nhs"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; broken = true; }; + ppiStats = derive2 { name="ppiStats"; version="1.62.0"; sha256="0w5gkfah2y50x4wj5fn8i6ycx1x013mn9w4bs8r2vfqabpws1a81"; depends=[Biobase Category graph lattice RColorBrewer]; broken = true; }; predictionet = derive2 { name="predictionet"; version="1.40.0"; sha256="1f3ghlcfnls9mx2hbs923rdz7kn0wdhy2csp1y1286c5q5dybrgh"; depends=[catnet igraph MASS penalized RBGL]; broken = true; }; + pulsedSilac = derive2 { name="pulsedSilac"; version="1.9.1"; sha256="1zb8xzs9h4rcrnmsfvrwb1qixn3jbnzxdwqgdrb82hgmxabmajlb"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment UpSetR]; broken = true; }; scClassifR = derive2 { name="scClassifR"; version="1.2.0"; sha256="0p9l9q5ina0axrqvqn1y5wkfqi0nacxm3nm6ny34j53znv07b2zz"; depends=[ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; broken = true; }; slinky = derive2 { name="slinky"; version="1.12.0"; sha256="05ywydvyz3jnzbhabhz1sd61hpy9nb22512zpbi48mv5wic1sv3v"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; broken = true; }; tofsims = derive2 { name="tofsims"; version="1.22.0"; sha256="0da4843wbcr821yp8z3z4vd81qpm2lblckgd01fm89lmwj393z65"; depends=[ALS alsace KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; broken = true; }; + tspair = derive2 { name="tspair"; version="1.53.0"; sha256="04xxrm313mnknhc38vl1sx6hic2g1x1xaa5772qlc7ip957hz85k"; depends=[Biobase]; broken = true; }; } diff --git a/third_party/nixpkgs/pkgs/development/r-modules/cran-packages.nix b/third_party/nixpkgs/pkgs/development/r-modules/cran-packages.nix index d9ae842f48..24b97075ac 100644 --- a/third_party/nixpkgs/pkgs/development/r-modules/cran-packages.nix +++ b/third_party/nixpkgs/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2022-10-30"; }; +let derive2 = derive { snapshot = "2022-12-13"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; AATtools = derive2 { name="AATtools"; version="0.0.2"; sha256="10adwxyqnbjw2a0pxrp4qbs68fn2bdxwcbaqmvx5xfgrj4skl68z"; depends=[doParallel dplyr foreach magrittr]; }; @@ -17,8 +17,8 @@ in with self; { ABPS = derive2 { name="ABPS"; version="0.3"; sha256="0n3f66nmfi5v94il1mxy026mi84w01ph2aljk60vn3mrz8kwf2ll"; depends=[kernlab]; }; ACA = derive2 { name="ACA"; version="1.1"; sha256="1i3hm27nvnkvc39xlh0d1blq8q0q02czmvgi3cazmjx3jvxay0vq"; depends=[]; }; ACDC = derive2 { name="ACDC"; version="1.0.0"; sha256="11nlg6pcmfa8pl1f5fxxcig1z1j74yizllh5y9rcdbdfzcasvnzn"; depends=[colorspace deSolve dplyr ggplot2 latex2exp magrittr patchwork tibble tidyr]; }; - ACDm = derive2 { name="ACDm"; version="1.0.4.1"; sha256="129ykw0j8z30mr4c01qzx6qy6h4bl87zxvmps0vkh8cqb7akninq"; depends=[dplyr ggplot2 plyr Rsolnp zoo]; }; - ACEP = derive2 { name="ACEP"; version="0.0.1"; sha256="1xpn3x89zdwkwvki4hij2r2fknn75qhjxhdcmlj8hk86fwhsqfm4"; depends=[]; }; + ACDm = derive2 { name="ACDm"; version="1.0.4.2"; sha256="00i33b76gqllyc6ywwwrgyjvxfspqb3jf52b9sjaazlfwgn5xyjf"; depends=[dplyr ggplot2 plyr Rsolnp zoo]; }; + ACEP = derive2 { name="ACEP"; version="0.0.21"; sha256="1c3krdxfpdmpj8z3bwi6gqq621n1hvna593bhcmrzkyv2jkc0k7a"; depends=[httr]; }; ACEsearch = derive2 { name="ACEsearch"; version="1.0.0"; sha256="1ssq8avj20dk2mal0j5dvshf7qgk0as90sgl71cn91cq8lbiilpn"; depends=[httr testthat]; }; ACEsimFit = derive2 { name="ACEsimFit"; version="0.0.0.9"; sha256="0ifwgpnql14z1qzw8fmllgzl97bwd35f0558ymmcxz1mhgh6cb2v"; depends=[OpenMx]; }; ACEt = derive2 { name="ACEt"; version="1.8.2"; sha256="0583c9dg2yf01zf5p0bf24zipkm8yp7rwhn1dxyw2d0v881bbli6"; depends=[BH MASS Rcpp RcppArmadillo]; }; @@ -54,6 +54,7 @@ in with self; { AGSDest = derive2 { name="AGSDest"; version="2.3.4"; sha256="140bqzgaagdyzgxsn998jw2sxak448i47xyacn2psfnps440gfjr"; depends=[ldbounds]; }; AHM = derive2 { name="AHM"; version="1.0.1"; sha256="00r1rn7d64a18rckbxvla5yapqv00p9ajxv72fx7s6p80kfal89w"; depends=[devtools dplyr glmnet Matrix mixexp plgp quadprog tibble tidyr]; }; AHMbook = derive2 { name="AHMbook"; version="0.2.6"; sha256="055li8mj863icvcrp23wfsg7gf8zmi8zn0hck2yraygazv2xk97k"; depends=[coda fields mvtnorm plotrix raster sp spdep unmarked]; }; + AHPWR = derive2 { name="AHPWR"; version="0.1.0"; sha256="1g7d1vbjxb232fk6wjah73kjm6pj81acls8wqssphgnfiffgrrq6"; depends=[dplyr formattable ggplot2 igraph magrittr readxl tibble tidyr xlsx]; }; AHPhybrid = derive2 { name="AHPhybrid"; version="0.1.0"; sha256="1hf2ba52nim13jwkq857vnmnnb1yhgdz6kipqg3mmqrgz7kg52v1"; depends=[]; }; AHSurv = derive2 { name="AHSurv"; version="0.1.0"; sha256="051q6iamqhhkrq7bfhq40n9svd4wfqyxscgwfnsflqdmbgm6gghs"; depends=[flexsurv rootSolve]; }; AICcmodavg = derive2 { name="AICcmodavg"; version="2.3-1"; sha256="1c2qqizssy7jvzkndlljazk28rjq5csgawzs43gv3s9qbahpslfh"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; }; @@ -67,12 +68,12 @@ in with self; { ALSM = derive2 { name="ALSM"; version="0.2.0"; sha256="1g7zk8q462j4faq5wzzghkjc003ny6rj8hrymsgvh3fg3a72lvy3"; depends=[car leaps SuppDists]; }; ALTopt = derive2 { name="ALTopt"; version="0.1.2"; sha256="1nbbvniramajg6k83xqgx7r0abjrfja8zz0y3g3j8qmvbcqmjx13"; depends=[cubature lattice]; }; ALUES = derive2 { name="ALUES"; version="0.2.1"; sha256="12fayxz0cb8wibccgz62gzrbkwzw2y4xljixrh02i1lbfwgsky14"; depends=[Rcpp]; }; - ALassoSurvIC = derive2 { name="ALassoSurvIC"; version="0.1.0"; sha256="0q02rz947bp6i7sbb5nzxq8ky74iprdnpbwnmnn7vg29vhca4b09"; depends=[Rcpp]; }; - AMAPVox = derive2 { name="AMAPVox"; version="0.12.0"; sha256="11achgmgh42q3m50ilxw7laa5v93nq254rl373z7zqk1hvpyy3xk"; depends=[curl data_table dplyr rappdirs rvest stringr]; }; + ALassoSurvIC = derive2 { name="ALassoSurvIC"; version="0.1.1"; sha256="0asaip7mq1brahirm025d57gk1fgysbmhi6jypf2jihai7dl4jg2"; depends=[Rcpp]; }; + AMAPVox = derive2 { name="AMAPVox"; version="0.12.1"; sha256="0hn9c0kasyvmfavk8ppfasl3p171xi5p3qzydsk41szvkm9wx6qy"; depends=[curl data_table dplyr rappdirs rvest stringr]; }; AMCP = derive2 { name="AMCP"; version="1.0.1"; sha256="14fbb2p4dbgi7i31xxavrldw4wnd4cjjh56ys63rivkswi1hhzj2"; depends=[]; }; AMCTestmakeR = derive2 { name="AMCTestmakeR"; version="1.0.0"; sha256="1vgncc61gmqhax2a7072jb36bzkycv80xqihkr5qs8jxnqqkndxd"; depends=[]; }; AMModels = derive2 { name="AMModels"; version="0.1.4"; sha256="18h075bzk8s75b3zmjd0x8c6dpl40445d4kv8n0p4ldnx80b1aha"; depends=[unmarked]; }; - AMPLE = derive2 { name="AMPLE"; version="1.0.0"; sha256="1lcwwf41i0mkg2bv8z5mzrj6h3pa31h33mrmbxbndjgb3ivz2wf5"; depends=[ggplot2 markdown R6 RColorBrewer scales shiny shinyjs shinyscreenshot]; }; + AMPLE = derive2 { name="AMPLE"; version="1.0.1"; sha256="1bi39liky0lmv56rxcrf4m9vc3s4xi1z2wcigfkpvsap4gy67qph"; depends=[ggplot2 markdown R6 RColorBrewer scales shiny shinyjs shinyscreenshot]; }; AMR = derive2 { name="AMR"; version="1.8.2"; sha256="1d47akk1amf9x28a3ss0j2453hk9rdqkzdklxnv40b13hvjd8l0n"; depends=[]; }; ANN2 = derive2 { name="ANN2"; version="2.3.4"; sha256="1izljhz3rkzq05dkvg9q3fdyj7q871j8lsky67d5r8ffpzm1lk3z"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 testthat viridisLite]; }; ANOM = derive2 { name="ANOM"; version="0.5"; sha256="14nfy9xplbabfprwxz5fvx26nmqhp657vr6d90dc8vk8ds63ckiz"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; }; @@ -82,8 +83,7 @@ in with self; { ANOVAreplication = derive2 { name="ANOVAreplication"; version="1.1.5"; sha256="1d2r2cwpn9rdfbmiccag487pvsq6adn7b321c5z8i7n671h2wi26"; depends=[quadprog shiny]; }; ANTs = derive2 { name="ANTs"; version="0.0.16"; sha256="1bvbr9m5fbq3x5mfn4xhfm2x7a8zs616cf02gzv65r8k9q2348ll"; depends=[gtools Kendall lme4 Rcpp RcppArmadillo RcppEigen rstudioapi]; }; AOV1R = derive2 { name="AOV1R"; version="0.1.0"; sha256="0dv7k0mifybkarpwqyla5j6cvw9dcch09wvdq09ra9bsf4vyk652"; depends=[cellranger data_table lazyeval purrr]; }; - APAtree = derive2 { name="APAtree"; version="1.0.1"; sha256="0vhvx2xp62avyq405jqn4i3z8awlifcs1lb527brxxhybrhnk4rv"; depends=[BH FD lwgeom raster Rcpp sf units]; }; - APCI = derive2 { name="APCI"; version="1.0.5"; sha256="0wkpcjsgzk01x4qc395wwqr856fr096v8vhydcw84yrmp8w3clxx"; depends=[data_table dplyr gee ggplot2 ggpubr magrittr stringr survey]; }; + APCI = derive2 { name="APCI"; version="1.0.6"; sha256="0lfbx067vqh2yn15jmiicva8h38k0vgdr3s6m2jgswfbp11a8pjh"; depends=[data_table dplyr gee ggplot2 ggpubr magrittr stringr survey]; }; APCanalysis = derive2 { name="APCanalysis"; version="1.0"; sha256="11snn5i8zyjpzf58ica762fpp14v7x5h8a8iwx4s4v81pgvlx862"; depends=[]; }; APCtools = derive2 { name="APCtools"; version="1.0.1"; sha256="1aq55a3glsqyp7gzly1nfaxxlyiq2ki6h9i5qwgz7dbni4vwggd4"; depends=[checkmate colorspace dplyr ggplot2 ggpubr knitr mgcv scales tidyr]; }; APFr = derive2 { name="APFr"; version="1.0.2"; sha256="1vax7rfccds6qz3bi6n1h3nzl9jnxpwk331wmpsbqlk23md3m4g4"; depends=[]; }; @@ -98,7 +98,7 @@ in with self; { AR = derive2 { name="AR"; version="1.1"; sha256="1wn4g2997c4vc3mzq2pv8ld0ryp0i78v4zlqqryvhshxgnz4f2pr"; depends=[DISTRIB]; }; ARCensReg = derive2 { name="ARCensReg"; version="2.1"; sha256="05zjk1wxqfigzg80lvx1940a059jfdr9zbzgzmz2n01glj1lvj63"; depends=[msm mvtnorm numDeriv tmvtnorm]; }; ARCokrig = derive2 { name="ARCokrig"; version="0.1.2"; sha256="0pk0y0gsw681py0vwizxvh1jqjnapzqfr0mbdpli1sray55xbjr2"; depends=[ggplot2 mvtnorm Rcpp RcppArmadillo RcppEigen]; }; - ARDL = derive2 { name="ARDL"; version="0.2.0"; sha256="19ggs0ipqnivdwvx5ry7i7p2yvrrqj8bydcka44plh44kqa35kc8"; depends=[aod dplyr dynlm lmtest msm stringr zoo]; }; + ARDL = derive2 { name="ARDL"; version="0.2.1"; sha256="151mw6z67ssa3pykmbcijgcw4msbrpn1l4b5qj3pz9v9k3j05idl"; depends=[aod dplyr dynlm lmtest msm stringr zoo]; }; ARHT = derive2 { name="ARHT"; version="0.1.0"; sha256="1fz81a202r8vk655dg6a03zfq3gfkimqjvmc95k3j02xz0iv58kn"; depends=[]; }; ARIMAANN = derive2 { name="ARIMAANN"; version="0.1.0"; sha256="0n4n9srl56s6pxjib43ksb9rahmsb509sfvpjk4py8m4r01ab2m2"; depends=[forecast tseries]; }; ARIbrain = derive2 { name="ARIbrain"; version="0.2"; sha256="18c7yxkrnqh18gcfzvdc5wqig6ywdmjcy8rlz0fdj3b8fb84dfpr"; depends=[hommel plyr RNifti]; }; @@ -113,12 +113,13 @@ in with self; { ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.3.1"; sha256="089c4vm629rni0dfgg3r2a9s9yisdx1qs2dwssg44qw1w4hf1f50"; depends=[sp]; }; ASIP = derive2 { name="ASIP"; version="0.4.9"; sha256="06f1nvy920vyx3bmdi77mwvfsn32xsfxaslhagnf1zh652vfkbwi"; depends=[raster rgdal stringr]; }; ASMap = derive2 { name="ASMap"; version="1.0-4"; sha256="0xnrl8jhbvbc789w5gc9dz7j7gzc7wsc94a3d2wdplrmxn186nrb"; depends=[fields gtools lattice qtl RColorBrewer]; }; + ASRgenomics = derive2 { name="ASRgenomics"; version="1.1.3"; sha256="1yl3q1fjfyl0v0wpbgnbh8zj5j8zi1imf19cj66fdvji3i4c4lsi"; depends=[AGHmatrix cowplot crayon data_table ellipse factoextra ggplot2 Matrix scattermore superheat]; }; ASSA = derive2 { name="ASSA"; version="2.0"; sha256="10r5406g6i0959k1zm5h9cbwqmnyf7zy80ahiqsyrapm3g5rphxg"; depends=[]; }; - ASSISTant = derive2 { name="ASSISTant"; version="1.4.2"; sha256="1vh1glk83lg010v2fc289gr6xy0dzbrqcjfva2mmaymk6v78a1w5"; depends=[dplyr knitr magrittr mvtnorm R6]; }; + ASSISTant = derive2 { name="ASSISTant"; version="1.4.3"; sha256="0apaj4lfkbg08xrw8mknf50s1vyd4j5mbwciwgblq7ydh3pyjxaj"; depends=[dplyr knitr magrittr mvtnorm R6]; }; AST = derive2 { name="AST"; version="0.1.0"; sha256="0z5dw5qw0i61v4796ms7pp66f9y4ylxrcls31ixzcmkklh3rcnp3"; depends=[]; }; ASV = derive2 { name="ASV"; version="1.1.1"; sha256="1cwsfc5mylivg65mb93d0v8kalirq5vwjx78fjyylsdc4w33gzqb"; depends=[freqdom Rcpp RcppArmadillo RcppProgress]; }; ATAforecasting = derive2 { name="ATAforecasting"; version="0.0.57"; sha256="15ih8jmgp20iskgbn8v5gbbh3d724gmv0943lc09yvja7b6wxvba"; depends=[forecast Rcpp RcppArmadillo Rdpack seasonal stlplus stR timeSeries TSA tseries xts]; }; - ATNr = derive2 { name="ATNr"; version="1.0.1"; sha256="1ryh99yifldml6fpprz01lap1nzlifjb2w8wgnmx95byz7gayrm9"; depends=[deSolve Rcpp RcppArmadillo]; }; + ATNr = derive2 { name="ATNr"; version="1.0.2"; sha256="0p6pya91aklylig80xca68n5xx0ngzn8p0ba8sfrznqj53g8x4r5"; depends=[deSolve Rcpp RcppArmadillo]; }; ATR = derive2 { name="ATR"; version="0.1-1"; sha256="0via7zm3byzbdgrfw351fqvx0g5cj2z31bqfwh7kr99nqgjh0dyn"; depends=[partykit]; }; ATbounds = derive2 { name="ATbounds"; version="0.1.0"; sha256="007gc9yjxwlhkb0mibxaa394xdiilfm8z6jbbqdn6wl986p07pg3"; depends=[mgcv]; }; AUC = derive2 { name="AUC"; version="0.3.2"; sha256="07xf47kypqbsg2mixmq6mnh4s89aqan9bgl6kfv6lbx8ajv2asw3"; depends=[]; }; @@ -134,6 +135,7 @@ in with self; { AcrossTic = derive2 { name="AcrossTic"; version="1.0-3"; sha256="03180h79jhjd66ibrnsfp3yyp2jlfysp7cymw46phzj2palghsc0"; depends=[lpSolve treeClust]; }; ActCR = derive2 { name="ActCR"; version="0.3.0"; sha256="1w3xkq3wanpa2j3rfzzdvad2r3vzzvp76kp56mh2s07p3xql6rv0"; depends=[cosinor cosinor2 dplyr minpack_lm zoo]; }; ActFrag = derive2 { name="ActFrag"; version="0.1.1"; sha256="08r3gwjz4fkyy85dxqix0ffm5xyq45032qv3snnzxnlqxslxbqn1"; depends=[accelerometry dplyr ineq survival tidyr]; }; + ActiSleep = derive2 { name="ActiSleep"; version="0.2.1"; sha256="0nkfddfv0g1bvsg6811lrmy0cx7knmi225snyp22bh9ly9fnlqp8"; depends=[accelerometry DBI dplyr lazyeval lubridate RSQLite stringr tibble]; }; ActiveDriver = derive2 { name="ActiveDriver"; version="1.0.0"; sha256="10c7ga48fwvpd5mc4dqiyw4kc2l0iz5qn4hg7xk15r1qmm5rsipa"; depends=[MASS]; }; ActiveDriverWGS = derive2 { name="ActiveDriverWGS"; version="1.2.0"; sha256="0xnplgwxd197a4d422bsxg753q158i12ils16awd1cw30wafdxkk"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; ActivePathways = derive2 { name="ActivePathways"; version="1.1.1"; sha256="1crq164vyqhdq5y3q09k3m5zljqrhcd5ak0jrc0xqvzf0pasml2m"; depends=[data_table ggplot2]; }; @@ -142,7 +144,6 @@ in with self; { AdMit = derive2 { name="AdMit"; version="2.1.9"; sha256="0dlmqpwqfhhc4z2xr44f00xsg0hbmw2c5z2d4pbifv36jlrdxbip"; depends=[mvtnorm]; }; AdaSampling = derive2 { name="AdaSampling"; version="1.3"; sha256="1c8dh8lxyb076317n4qk2g3qv5j4mc1dszbh3k1p2b0nxiprqk5i"; depends=[caret class e1071 MASS]; }; AdapSamp = derive2 { name="AdapSamp"; version="1.1.1"; sha256="1jayjrsiib2ij4rxxj59g71r3xhzl5yqh0lhi8k6cfy03i7dkvis"; depends=[pracma]; }; - AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.69"; sha256="0mclsnsxjyg1q7p7654gjsczzdzpa6avx3b9jpmdb0n63zdgmwy3"; depends=[MASS mgcv nlme SemiPar]; }; AdaptGauss = derive2 { name="AdaptGauss"; version="1.5.6"; sha256="076jjnqp4ayq4kh95qns4kfzfvl6mjllhsq6hfp66bww7w976xxh"; depends=[DataVisualizations pracma Rcpp shiny]; }; AdaptiveSparsity = derive2 { name="AdaptiveSparsity"; version="1.6"; sha256="0imr5m8mll9j6n4icsv6z9rl5kbnwsp9wvzrg7n90nnmcxq2cz91"; depends=[MASS Matrix Rcpp RcppArmadillo]; }; AdequacyModel = derive2 { name="AdequacyModel"; version="2.0.0"; sha256="0amp6ic1wylk24sp9wpx3ci38njj7b9qjqfp89j39hkl6kc1q7sq"; depends=[]; }; @@ -155,7 +156,7 @@ in with self; { AeroSampleR = derive2 { name="AeroSampleR"; version="0.1.14"; sha256="027lf82kpllz8v0g2mbbjx1yc2nmw5i0pfhmnhay3ms0yc4p4sbm"; depends=[dplyr flextable ggplot2 ggthemes purrr stringr tidyr tidyselect]; }; AggregateR = derive2 { name="AggregateR"; version="0.1.1"; sha256="1s2q888bqx6ilisv5s4g8ryja97nz6cz4ycm4sw1i63l5wjrwljc"; depends=[data_table NCmisc tibble]; }; AgreementInterval = derive2 { name="AgreementInterval"; version="0.1.1"; sha256="1bvinzylvsaipa8mq15f45b6h37znavlrdl0rbrx1pqw52r7z8kv"; depends=[psych]; }; - AgroR = derive2 { name="AgroR"; version="1.3.1"; sha256="1a08wm33rpnchxwy1pn298wwgg2zw5a9xih92i843ch43pw02dis"; depends=[cowplot crayon drc dunn_test emmeans ggplot2 ggrepel gridExtra gtools lme4 lmtest MASS multcomp multcompView nortest RColorBrewer]; }; + AgroR = derive2 { name="AgroR"; version="1.3.2"; sha256="098ichvfsx7v1mawwy4mcxw7llfxkp7iqhnkawqq5f4lsjhr376h"; depends=[cowplot crayon drc dunn_test emmeans ggplot2 ggrepel gridExtra gtools knitr lme4 lmtest MASS multcomp multcompView nortest RColorBrewer]; }; AgroReg = derive2 { name="AgroReg"; version="1.2.7"; sha256="0kn7prhd9fzp2ibj12nz5cj5lag6bn7bmgva2xl7cf2b6pwmfijl"; depends=[boot broom dplyr drc egg ggplot2 minpack_lm rcompanion]; }; AgroTech = derive2 { name="AgroTech"; version="1.0.2"; sha256="0pfw0sps9fbzzyy4d803j9fbg6a23nj18rks0bnrj9hms7a3vwfs"; depends=[crayon ggplot2 ggrepel gridExtra lmtest nortest readxl xlsx]; }; AhoCorasickTrie = derive2 { name="AhoCorasickTrie"; version="0.1.2"; sha256="0zh3y5jd8m0xbj6lqr01zvwj9qd1xr3iq7vd6sgr3g3qh4kqm5pq"; depends=[Rcpp]; }; @@ -166,10 +167,10 @@ in with self; { AlleleRetain = derive2 { name="AlleleRetain"; version="2.0.2"; sha256="0b6h5giskqbjbrk8nf29i75wrhxsjw1c87laiqzrpbp9n717bl20"; depends=[]; }; AlleleShift = derive2 { name="AlleleShift"; version="1.1"; sha256="1cmmxwp3qq28hln6k9hfv61b53nwx08iidhcxj8bdwv7msyp9f8k"; depends=[adegenet BiodiversityR vegan]; }; Allspice = derive2 { name="Allspice"; version="1.0.5"; sha256="0a99iqb01snza0ad07lrzmn88vpq8wvx5vjr8fk0wbzihxzbzn4y"; depends=[]; }; - AlphaHull3D = derive2 { name="AlphaHull3D"; version="1.1.0"; sha256="131wcx5yagsl42qwwcx84shd4v1sh8g2381njcqq5lsa2y2rsarh"; depends=[BH Rcpp RcppCGAL RcppEigen rgl Rvcg]; }; - AlphaPart = derive2 { name="AlphaPart"; version="0.9.7"; sha256="0v1ywxlx248v6nqxcfh0d1mgpzs08vxww807c60mq7d4hqdlar82"; depends=[directlabels dplyr ggplot2 magrittr pedigree Rcpp reshape tibble]; }; - AlphaSimR = derive2 { name="AlphaSimR"; version="1.3.1"; sha256="1i972xax6axrmxjqh5v217f3zwmdbfhm0zfjc6gkmhydddp0zn8k"; depends=[BH R6 Rcpp RcppArmadillo Rdpack]; }; - Amelia = derive2 { name="Amelia"; version="1.8.0"; sha256="0plrnmlwn91bmrx8ip83nqb15ykjxjl6m49788sinq5cinkdbh9y"; depends=[foreign Rcpp RcppArmadillo]; }; + AlphaHull3D = derive2 { name="AlphaHull3D"; version="2.0.0"; sha256="1jp4m2yd9z8m4gz5hfa08qm02kalrzy6pbjf3rfcb0xjglk1lngr"; depends=[BH Rcpp RcppCGAL RcppEigen rgl Rvcg]; }; + AlphaPart = derive2 { name="AlphaPart"; version="0.9.8"; sha256="1ih76v3kgnladqq3nvlqrz5sqkg1j97m778kchz6k05cjxhj8l4q"; depends=[directlabels dplyr ggplot2 magrittr pedigree Rcpp reshape tibble]; }; + AlphaSimR = derive2 { name="AlphaSimR"; version="1.3.4"; sha256="0b8qp3azia9sfl458y8zgxxxpzs7l2bwpkdnh1vza2ak61f4q85w"; depends=[BH R6 Rcpp RcppArmadillo Rdpack]; }; + Amelia = derive2 { name="Amelia"; version="1.8.1"; sha256="1r27zjlr8ld932lr6dn79cravss17gry6p0mxgdlbj6g58mfc30j"; depends=[foreign Rcpp RcppArmadillo rlang]; }; AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; AmesHousing = derive2 { name="AmesHousing"; version="0.0.4"; sha256="080r0fkmqsdrjgwbmdzacnkmd8py611z54i6r7nzj14r295d5qhk"; depends=[dplyr magrittr]; }; AmigaFFH = derive2 { name="AmigaFFH"; version="0.4.1"; sha256="1iv89nqlqc5lrnz9r56ajgmb54pkk1zafihh1m0528i0hg4l7qxm"; depends=[tuneR vctrs]; }; @@ -185,7 +186,7 @@ in with self; { Andromeda = derive2 { name="Andromeda"; version="0.6.1"; sha256="08n6ccx009mfnzmhgwzracwyf8ad40crmvb0wyg304dn2abgybn8"; depends=[cli DBI dbplyr dplyr hms pillar rlang RSQLite tidyselect zip]; }; AnglerCreelSurveySimulation = derive2 { name="AnglerCreelSurveySimulation"; version="1.0.2"; sha256="1nhd0i30g5wb5jh96gfaa0lgnbnj0m2vy4gz7v2c3142396zalnx"; depends=[dplyr ggplot2]; }; AnimalHabitatNetwork = derive2 { name="AnimalHabitatNetwork"; version="0.1.0"; sha256="1bhqypkiw5v9w26jbdmhndqj5hjfmf7zwivrq2hgs0zcjxwa8gfn"; depends=[ggplot2 igraph]; }; - AnnoProbe = derive2 { name="AnnoProbe"; version="0.1.6"; sha256="182m711l5m037mfyvr6334pmv338fxb3007j6713abvylsh6x06q"; depends=[Biobase DT ggplot2 ggpubr pheatmap]; }; + AnnoProbe = derive2 { name="AnnoProbe"; version="0.1.7"; sha256="0715bpifj8r4ji0m89wk4x7vd3pwx8kqy9vs8m0ivmq7bb56nx0b"; depends=[Biobase curl DT ggplot2 ggpubr httr pheatmap xml2]; }; AnnotationBustR = derive2 { name="AnnotationBustR"; version="1.3.0"; sha256="1q5yxzzmzvw1r64r4y0xh1fiyhaqbx5q4lzpawqaggra4w9igdl8"; depends=[ape seqinr]; }; AnnuityRIR = derive2 { name="AnnuityRIR"; version="1.0-0"; sha256="0yvfqzwhm5nhywfhzkxkfm07c0qi6z21j1cdaypz89qn567aj1d9"; depends=[actuar EnvStats fitdistrplus mc2d tseries]; }; AntAngioCOOL = derive2 { name="AntAngioCOOL"; version="1.2"; sha256="1krwms0y3xppc2y4m0az51wcbh4jq7mlr0jwinp66w8gh4k3qnp2"; depends=[caret rJava rpart RWeka]; }; @@ -193,6 +194,7 @@ in with self; { AnthropMMD = derive2 { name="AnthropMMD"; version="3.1.0"; sha256="10ms5akc2r9dmcm8dd8bn7qn0bq71c270yhs61981n4mxsvgjmnr"; depends=[plotrix scatterplot3d shiny smacof]; }; Anthropometry = derive2 { name="Anthropometry"; version="1.17"; sha256="0vxjlzxv16bygw8n57f25msq5bd1dydg41my92ximah0nzzvbg41"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; }; AntibodyTiters = derive2 { name="AntibodyTiters"; version="0.1.24"; sha256="1400n46kmaa074m6yilmkvcn83dyxk2w76x8cny1dygfzsnhhjxl"; depends=[DescTools openxlsx]; }; + AnxietySleep = derive2 { name="AnxietySleep"; version="0.0.1"; sha256="07im2gjq62y3vgim9j0ar29qhmi7r79zbjdi024h04mxrwpic5z6"; depends=[data_table lifecycle]; }; Aoptbdtvc = derive2 { name="Aoptbdtvc"; version="0.0.2"; sha256="1bygvf8vgzz3wa4485x2xxpk784zmw1nwsjjjysm12brrldh8zzh"; depends=[lpSolve MASS]; }; AovBay = derive2 { name="AovBay"; version="0.1.0"; sha256="110y9wbqr0m9b6wr1c5mncrdjpg247308989bswkqnim2msvnzcf"; depends=[BayesFactor BH broom car dplyr DT highcharter htmltools moments nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble waiter]; }; ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.3"; sha256="0h4snigh1yhp34vw52h4b6qbh9c4cvwz2cx8fwvbnw6lslmg5cgv"; depends=[doParallel foreach stringr]; }; @@ -206,7 +208,7 @@ in with self; { ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.8"; sha256="00d8lpasz96l55v3982mqg85b237lxvsjl65p288yzj87860v2kj"; depends=[coda digest dplyr ggalt ggplot2 ggraph gplots gtools hdrcde magrittr readr reshape2 shiny toOrdinal]; }; ArchaeoPhases_dataset = derive2 { name="ArchaeoPhases.dataset"; version="0.2.0"; sha256="0yffzc9jmyiil3p0bvf0fpq64mn55swcnizi3bgsl44d4j93y68q"; depends=[]; }; Arothron = derive2 { name="Arothron"; version="2.0.3"; sha256="0rb1n9pmp7q2wdihn26kbpyvyznlk8mrs8c26l1ar4q29jw44rw4"; depends=[abind alphashape3d compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; }; - AsioHeaders = derive2 { name="AsioHeaders"; version="1.22.1-1"; sha256="15cd85zkjzpz321pnnjwn0g2v4rza6cdqanx89p5j3nrfihjrh32"; depends=[]; }; + AsioHeaders = derive2 { name="AsioHeaders"; version="1.22.1-2"; sha256="192qxayrpvi02wrqq2h5cjc92aaxrsgw7z32r8qk5imqg3mc0a8n"; depends=[]; }; AssetAllocation = derive2 { name="AssetAllocation"; version="1.0.0"; sha256="02r9a21696y1gj5qw01jddnyda6hm962l1am7igrqyywh05canch"; depends=[NMOF PerformanceAnalytics quantmod riskParityPortfolio RiskPortfolios xts zoo]; }; AssetCorr = derive2 { name="AssetCorr"; version="1.0.4"; sha256="0r98li2lxhfap1hn6h0l78phpm9m1nlcqhwzpq0ahhw0b1rd4qkf"; depends=[boot ggplot2 knitr mvQuad mvtnorm numDeriv qpdf Rdpack VineCopula]; }; AssetPricing = derive2 { name="AssetPricing"; version="1.0-3"; sha256="199ygwfddpzxnj388gxkn7xyhnvjr24f5jg4lnydh0z7pb96pm5r"; depends=[deSolve polynom]; }; @@ -253,13 +255,14 @@ in with self; { BAMBI = derive2 { name="BAMBI"; version="2.3.4"; sha256="0ksc4nccd89fsdmm70q9al0ww3y645navkvqmh7lb1imgnl5bwph"; depends=[bridgesampling coda future_apply gtools label_switching lattice loo mvtnorm numDeriv qrng RColorBrewer Rcpp RcppArmadillo scales]; }; BAMMtools = derive2 { name="BAMMtools"; version="2.1.10"; sha256="1ng7pf08nk7y00146qvqr9099kpvbgn1swi3cawzr9zd55gv7qvr"; depends=[ape gplots Rcpp]; }; BANOVA = derive2 { name="BANOVA"; version="1.2.1"; sha256="07ghmzsb77vcd3snmg59spp60j603gawnqs847x1x44pnxs9l4wl"; depends=[coda rjags rstan runjags]; }; + BAR = derive2 { name="BAR"; version="0.1.1"; sha256="0bcq6lvijq1vxri2dbhnqcn46f799h3ag974zgcdpx4c5apph04w"; depends=[]; }; BARIS = derive2 { name="BARIS"; version="1.1.3"; sha256="1ccwxc7s1qk9zcs546kkpwzv26rxswrydnblvg4b8vbm5790n0gv"; depends=[checkmate data_table downloader dplyr glue httr janitor jsonlite magrittr memoise miniUI rgdal rio rstudioapi sf shiny stringi stringr XML]; }; BART = derive2 { name="BART"; version="2.9"; sha256="1yzwiyjc2gq2vvw5z2psmyqbbb1kq0xvsb0zingcn8qikw45mm5m"; depends=[nlme nnet Rcpp survival]; }; - BAS = derive2 { name="BAS"; version="1.6.3"; sha256="0l7x1zi1q1yjmaw0wwrp0aarlbjd6zxzi7brc5q4ipb52hw8xljr"; depends=[]; }; + BAS = derive2 { name="BAS"; version="1.6.4"; sha256="1w7y3cp6j1pak2wq6wf9wffas0yvsz716qbva2bx9nln72gr05z5"; depends=[]; }; BASS = derive2 { name="BASS"; version="1.2.2"; sha256="14zimfdkpsil22n1z4ldpi9smmja5kf7qqlklr5sr7y5avnh0hd9"; depends=[hypergeo truncdist]; }; BASiNET = derive2 { name="BASiNET"; version="0.0.5"; sha256="09g2h38kz1g9kkjc69si5d6z6fkayys9hinjs3p6dn7sx7zn2bx1"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; }; BASiNETEntropy = derive2 { name="BASiNETEntropy"; version="0.99.5"; sha256="06nshxxcj9nqdvdhr9lb55p2hsnbcdcqhnp0r9hs8yp3d1h7cv08"; depends=[Biostrings igraph randomForest]; }; - BAT = derive2 { name="BAT"; version="2.9.0"; sha256="1i47yr0q9v4ryqwx0rlyp0kjjczgiprm7by4ykbwmgzyl9y0gkgp"; depends=[ape geometry hypervolume MASS nls2 raster vegan]; }; + BAT = derive2 { name="BAT"; version="2.9.2"; sha256="1h90fqcnd6w4w0bjccz5zghqb05gddbiz3imfpbw14p23h11w3wq"; depends=[ape geometry hypervolume MASS nls2 raster vegan]; }; BAYSTAR = derive2 { name="BAYSTAR"; version="0.2-10"; sha256="1yn79nkwi33d6qsiklay3ngk26dvi44lap59zp545gidvn9fbir6"; depends=[coda mvtnorm]; }; BAwiR = derive2 { name="BAwiR"; version="1.2.7"; sha256="1vvym7bbfbi1x91962nfcqql0fiyv4svdk5329rq43nnh188i456"; depends=[Anthropometry dplyr ggplot2 ggthemes httr lubridate magrittr plyr purrr reshape2 rvest rworldmap scales stringi stringr tibble tidyr xml2]; }; BB = derive2 { name="BB"; version="2019.10-1"; sha256="0kf9sfsm3n036a8a8gjfpc9qdryvadb019kqjh80n1szdv7bdl04"; depends=[quadprog]; }; @@ -285,13 +288,13 @@ in with self; { BDEsize = derive2 { name="BDEsize"; version="1.6"; sha256="0dyjd5f1cqmzqnrbxz06pbxrk6gjrmsh2x6p7qllczvlmm7jdm5i"; depends=[fpow ggplot2]; }; BDP2 = derive2 { name="BDP2"; version="0.1.3"; sha256="14m85sigx6hk0qzhfgih43m2lxp9xczmp9g3z4pping6msbnbdrz"; depends=[rmarkdown shiny shinyBS]; }; BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; }; - BDgraph = derive2 { name="BDgraph"; version="2.70"; sha256="1s148fvvg1c0n4swsvcinlwckj86jys5nvwp4wlyzh3aw9siyqz7"; depends=[ggplot2 igraph pROC]; }; + BDgraph = derive2 { name="BDgraph"; version="2.71"; sha256="1lihsbliq7f91ywdq5cabzd5fbyhb10h62ss3n2l7i2fdglb77d1"; depends=[ggplot2 igraph pROC]; }; BE = derive2 { name="BE"; version="0.2.3"; sha256="1k2895w8jd0scd6nxh3jyxd7vz9hcapna9xkmis6i3byly5bvvan"; depends=[rtf]; }; BEACH = derive2 { name="BEACH"; version="1.3.1"; sha256="0biq6c74k8vb8ykafzf3blyi08rp65x1vaw3bfpwdc1ihc9wrgjr"; depends=[devtools DT haven plyr rJava rtf sas7bdat shiny WriteXLS xtable]; }; - BED = derive2 { name="BED"; version="1.4.8"; sha256="0626v6qrj2rhjfq0pbk2js5asrc810hxq5169xq5armmg7hblg4r"; depends=[dplyr DT miniUI neo2R readr rstudioapi shiny stringr visNetwork]; }; + BED = derive2 { name="BED"; version="1.4.11"; sha256="0rhpy80fc5vm6zphcs34fxmy0jlpx3dsapcsksxagprm7ijjdmh0"; depends=[dplyr DT miniUI neo2R readr rstudioapi shiny stringr visNetwork]; }; BEDASSLE = derive2 { name="BEDASSLE"; version="1.6"; sha256="0zqqjyal9wjjl1aayp324wdrq3aaqr7s5j912yb3rrvq4gqcfy0d"; depends=[emdbook MASS matrixcalc]; }; BEDMatrix = derive2 { name="BEDMatrix"; version="2.0.3"; sha256="1pq333x1shxw3wcqgcb4gqg6rwa0hyc24rib235q4zg10r2gyrbm"; depends=[crochet]; }; - BEKKs = derive2 { name="BEKKs"; version="1.3.1"; sha256="0awlvd20gsrzbpnhkk7sqsxb4g13y6h42pxgj3isck9d0kdfs7i3"; depends=[forecast future future_apply GAS ggfortify ggplot2 gridExtra ks lubridate mathjaxr moments numDeriv pbapply Rcpp RcppArmadillo reshape2 xts]; }; + BEKKs = derive2 { name="BEKKs"; version="1.4.0"; sha256="12amk1p99nrh747m832b8sd4lrm88s0dax6fphxcx9dm57r94av5"; depends=[forecast future future_apply GAS ggfortify ggplot2 gridExtra ks lubridate mathjaxr moments numDeriv pbapply Rcpp RcppArmadillo reshape2 xts]; }; BENMMI = derive2 { name="BENMMI"; version="4.3-7"; sha256="1v96g4l1zkpvvx8jdifnafyaz4ml8v1bxbl97r1n5n6mgw88gk77"; depends=[benthos dplyr ggplot2 jsonlite knitr markdown purrr readr tidyr xtable]; }; BEST = derive2 { name="BEST"; version="0.5.4"; sha256="109zl99bz1bndan1pm3hm0f1da86a18lcyzl0741z14l0m0d91a9"; depends=[coda HDInterval rjags]; }; BESTree = derive2 { name="BESTree"; version="0.5.2"; sha256="0yij6xdlvhbqifckaylgbhszwwp38d9x6vbpr1nl40mwwnv4bswz"; depends=[plyr]; }; @@ -310,7 +313,7 @@ in with self; { BHAI = derive2 { name="BHAI"; version="0.99.2"; sha256="1hawa55mk590is8ziav7fdszsa3a42bqb0znzqsazz5lkg4daaa7"; depends=[MCMCpack plotrix prevtoinc]; }; BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; }; BHMSMAfMRI = derive2 { name="BHMSMAfMRI"; version="2.1"; sha256="1wcsgzx69qrw1bnipb9ry6162mirk6miw62w8pcvazqj91aljfhd"; depends=[oro_nifti Rcpp RcppArmadillo wavethresh]; }; - BHSBVAR = derive2 { name="BHSBVAR"; version="3.0.1"; sha256="0k4iklbazw4fbwfd0nhg943ndwrhpxxlbzmfj3c10in84vz2p6v0"; depends=[Rcpp RcppArmadillo]; }; + BHSBVAR = derive2 { name="BHSBVAR"; version="3.1.1"; sha256="184dhaajjzplslbfjmdm9zyr7h39zi1h3p549lac2sy6mrkglrc0"; depends=[Rcpp RcppArmadillo]; }; BHTSpack = derive2 { name="BHTSpack"; version="0.6"; sha256="01y3ly83i70lkg2kgbw1r7r1g4k9rk41qyzzscbp8zgc9z63ll8z"; depends=[R2HTML xtable]; }; BI = derive2 { name="BI"; version="1.1.0"; sha256="1iv721wbh64qyij58llkxgz1s1rsc3x68h5gz69fxbf4x9cv2vlr"; depends=[]; }; BICORN = derive2 { name="BICORN"; version="0.1.0"; sha256="0mqk8vgp6jdk7f0paa06yqlibkd1y3vs69pg7i9mkvxmda7p4nkq"; depends=[]; }; @@ -322,11 +325,12 @@ in with self; { BINtools = derive2 { name="BINtools"; version="0.2.0"; sha256="0x97h0b2krdgrd0x266fidj77an3dq8mf9lnbas9112p4mhkmk58"; depends=[BH combinat dplyr mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringi tibble]; }; BIOMASS = derive2 { name="BIOMASS"; version="2.1.8"; sha256="18ypdqh5fc9a7yq8y5insadmvamrzrd9yn00g1cj1lxii0jn4r43"; depends=[data_table jsonlite minpack_lm proj4 rappdirs raster sp]; }; BIOdry = derive2 { name="BIOdry"; version="0.9"; sha256="1j6fbrvhiaz04fpybdldjk2prg3n5ayzvxqbx0g0vbna54kd1vz6"; depends=[ecodist nlme]; }; - BISdata = derive2 { name="BISdata"; version="0.2-0"; sha256="0d5dxb0jmiazbkmjmm0babv3hxgx74b9v7j08yhy5w3zl1fvlyr2"; depends=[]; }; + BIS = derive2 { name="BIS"; version="0.3.1"; sha256="1nmbcdk4p34grss2bwwqw5zynp5c2xfhhqs9h9s85nhdm7ark78v"; depends=[dplyr readr rvest tidyr tidyselect xml2]; }; + BISdata = derive2 { name="BISdata"; version="0.2-1"; sha256="0xmm40d9ag2g5j0lsy46ig3plzcqrw2p3iaciimw2y0v4fa8n3gh"; depends=[]; }; BLCOP = derive2 { name="BLCOP"; version="0.3.3"; sha256="08y9vmx3cknjvk6ngfwxlfnc03cqpj97i1ijrs1cw5sahjc0vmhc"; depends=[fBasics fMultivar fPortfolio knitr MASS quadprog rmarkdown RUnit timeSeries]; }; BLModel = derive2 { name="BLModel"; version="1.0.2"; sha256="0l5f2v5ggadmrci3qhhmxm3j9i6jii0anq5rv5vk50y2qzii2q15"; depends=[]; }; BLOQ = derive2 { name="BLOQ"; version="0.1-1"; sha256="0qs4pnzpfwkii6wpd8my34zw9k003b3is0y0aj1lhcm0qnn1p8h4"; depends=[maxLik mvtnorm]; }; - BLPestimatoR = derive2 { name="BLPestimatoR"; version="0.3.2"; sha256="0prc2m3hixv8hmnyhr5549406ln509llkhpqra2ifpzif0waw704"; depends=[Formula Matrix mvQuad numDeriv randtoolbox Rcpp RcppArmadillo]; }; + BLPestimatoR = derive2 { name="BLPestimatoR"; version="0.3.4"; sha256="07q5ifsvw1ccxys6y01ldh2n9v7chyv88rda1jbznb3nnwka2wh0"; depends=[Formula Matrix mvQuad numDeriv randtoolbox Rcpp RcppArmadillo]; }; BLR = derive2 { name="BLR"; version="1.6"; sha256="1wivqh19kxgr7nwa09s5ay6x1yidjk4hqanv0mzb1nbik98w9024"; depends=[]; }; BLRPM = derive2 { name="BLRPM"; version="1.0"; sha256="15q0jkw4swz35c58nv23k8g1dy1kkbqh5aydjck7pd0fmppqrhpx"; depends=[R6]; }; BLRShiny = derive2 { name="BLRShiny"; version="0.1.0"; sha256="0z3gr0bvjs7y0jkygh7h9habnk2807cwziajpgfmb7dxdrhccj68"; depends=[caret dplyr e1071 ggplot2 rhandsontable rmarkdown shiny]; }; @@ -343,18 +347,16 @@ in with self; { BMTAR = derive2 { name="BMTAR"; version="0.1.1"; sha256="0c70vkgv2sdci33yrk2n297k105wnlxj1qchskdparkiipf47xsh"; depends=[Brobdingnag doParallel expm ggplot2 ks MASS MCMCpack mvtnorm]; }; BMTME = derive2 { name="BMTME"; version="1.0.19"; sha256="07iw6aqcwn4a29b85cavfw6hp66csdzlaqwas40zr5ga3kp72j51"; depends=[BGLR doSNOW dplyr foreach matrixcalc mvtnorm progress Rcpp RcppArmadillo snow tidyr]; }; BMisc = derive2 { name="BMisc"; version="1.4.5"; sha256="0pdp8cnqj8cmyhppxrkqlckg3xlcswra9vsnjwwdlnvn8b00m5d1"; depends=[data_table Rcpp RcppArmadillo]; }; - BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="1.3"; sha256="1dnylvag24zqp93acdbn0ilbdzbn250pjjp6hjdd9d1zvla2ck85"; depends=[gplots MASS matrixcalc mvtnorm plyr Rcpp RcppArmadillo truncnorm]; }; BNPTSclust = derive2 { name="BNPTSclust"; version="2.0"; sha256="1ymvklv6d9684xzwdkvaxdjd1q20xmsf6kkfibn2wphlaqs2rh2n"; depends=[MASS mvtnorm]; }; BNPdensity = derive2 { name="BNPdensity"; version="2021.5.4"; sha256="16hm81wn08fjdamikzrmhpbsz31phkqxdqhp23w0pbxczk9gll47"; depends=[coda dplyr ggplot2 gridExtra survival tidyr viridis]; }; BNPmix = derive2 { name="BNPmix"; version="1.0.2"; sha256="114gn80b7yyl6hi5cdnc0rp2hzy7pp8z6q4is1h29yxlqa6acbq4"; depends=[coda ggplot2 ggpubr Rcpp RcppArmadillo RcppDist]; }; BNSL = derive2 { name="BNSL"; version="0.1.4"; sha256="0nrlx55364kgvkdpyaimgjxwnzmmdl1gmvyv3wkm8n2jyki92xxp"; depends=[bnlearn igraph Rcpp]; }; - BNSP = derive2 { name="BNSP"; version="2.1.6"; sha256="0ig531n9sj50wn5nwljc2x4wijv5i28jx73knzz2kshb56p8sl7l"; depends=[coda corrplot cubature Formula ggplot2 gridExtra label_switching mgcv plot3D plyr threejs]; }; + BNSP = derive2 { name="BNSP"; version="2.2.0"; sha256="105564bhknhrcv92fbzk4vka8jsvq75rdzvlzgxy8cgiraxqldv0"; depends=[coda corrplot cubature Formula ggplot2 gridExtra label_switching mgcv plot3D plyr threejs]; }; BNrich = derive2 { name="BNrich"; version="0.1.1"; sha256="0m3cz7npc7mwq2vj68hllbd2vf5xqw00jaxv1pm3c28mq7pb459j"; depends=[bnlearn corpcor glmnet graph]; }; BOIN = derive2 { name="BOIN"; version="2.7.2"; sha256="03h6s1nn87xgkk830wls06mgflg0arq084k74gfp1k4wccwkjr5y"; depends=[Iso]; }; BOJ = derive2 { name="BOJ"; version="0.3"; sha256="1x9lz01fjdk0aybs6zsbbq2xfjvh99qiimmnrkbcd6sj880vn3a3"; depends=[dplyr readr rvest tidyr tidyselect xml2]; }; BOSO = derive2 { name="BOSO"; version="1.0.3"; sha256="0zax40x2d62vcn8zznmzmykk33mv4vbjfl88i3r1djbvalcdf5cf"; depends=[MASS Matrix]; }; BOSSreg = derive2 { name="BOSSreg"; version="0.2.0"; sha256="0ln4nx0jlvz5kqk9qkcl8a2cyhsdcqqfs5112qcaabjiwjnvla7w"; depends=[glmnet Matrix Rcpp RcppArmadillo]; }; - BPEC = derive2 { name="BPEC"; version="1.3.1"; sha256="0jvq56cq1wnhwd6wvg02hbx4b5vc2hz1lyxi63pl41rk0xva615a"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools sp]; }; BPM = derive2 { name="BPM"; version="1.0.0"; sha256="17k2d1xjfz85ygx0xnh6yqca9nyypd32d7sbna3k33ynsjqay3x8"; depends=[limma]; }; BRACoD_R = derive2 { name="BRACoD.R"; version="0.0.2.0"; sha256="1jxxrgq2s5fqflp9ac4fx51jhlx33pdwijsp4vq63y430k79vcpp"; depends=[reticulate]; }; BRDT = derive2 { name="BRDT"; version="0.1.0"; sha256="1yv2fh4cc9h35l8cngpxnqa83a7bx79pr7c1gp9h84p1pigg8282"; depends=[]; }; @@ -365,11 +367,13 @@ in with self; { BRugs = derive2 { name="BRugs"; version="0.9-1"; sha256="1m3dlw6201bzf6fcm4qscpsmgjkpidwiil3m4iwfn0b0iv3dclcv"; depends=[coda]; }; BSBT = derive2 { name="BSBT"; version="1.2.1"; sha256="0ibqg3jr7l25aikz09s8v5w1z541dsw8pr30ixf6d1bly5bw5ahy"; depends=[expm igraph MASS]; }; BSDA = derive2 { name="BSDA"; version="1.2.1"; sha256="0vcf3h1rkgs0mr6rri2zjkb3c62dmndm281zh4ddz2vyw27wpwg2"; depends=[e1071 lattice]; }; - BSL = derive2 { name="BSL"; version="3.2.4"; sha256="16w5lkzwq8b393cxga4cdcwk1f185g24k7lq0xr842g94cc8jdpl"; depends=[coda copula DBI doRNG foreach ggplot2 glasso gridExtra MASS mvtnorm Rcpp RcppArmadillo Rdpack stringr whitening]; }; + BSGW = derive2 { name="BSGW"; version="0.9.4"; sha256="05gr0p9fmj5560s083iss8j4gyh5rk0kdi3qhq5dzr9mfzy0n12q"; depends=[doParallel foreach MfUSampler survival]; }; + BSL = derive2 { name="BSL"; version="3.2.5"; sha256="12fksih33a4r6dd8flv7s1hidazhfqcbyvvnppp25rn6jb7p6344"; depends=[coda copula doRNG foreach ggplot2 glasso gridExtra MASS mvtnorm Rcpp RcppArmadillo Rdpack stringr whitening]; }; BSPADATA = derive2 { name="BSPADATA"; version="1.1.0"; sha256="190zmjvw5q5gg47g21n2imclz1qg585cvjxl501mm910gx50rldb"; depends=[coda mvtnorm pbapply pscl spdep]; }; - BSPBSS = derive2 { name="BSPBSS"; version="1.0.4"; sha256="05wfcybcygwswm4syhcaa8fzbmk044lh7mm85m1fapgwgqviswkl"; depends=[BayesGPfit ggplot2 glmnet gplots gridExtra gtools ica movMF neurobase oro_nifti RandomFieldsUtils Rcpp RcppArmadillo rstiefel svd]; }; + BSPBSS = derive2 { name="BSPBSS"; version="1.0.5"; sha256="0ax92x657f8jm731wc1qry19mbi4d3xxcxh5zd07w3705va4k82y"; depends=[BayesGPfit ggplot2 glmnet gplots gridExtra gtools ica movMF neurobase oro_nifti Rcpp RcppArmadillo rstiefel svd]; }; BSS = derive2 { name="BSS"; version="0.1.0"; sha256="1lxmrdmr6c0niqz61kc9ybzszprn66jyinfy4dr9r6i161gvs4qg"; depends=[hypergeo MASS phangorn]; }; BSSasymp = derive2 { name="BSSasymp"; version="1.2-3"; sha256="1nqj8w8ilyhladjzhjp1rhi3ff7ik1m76pdhgs16ph7pzdw36w6i"; depends=[fICA JADE]; }; + BSSoverSpace = derive2 { name="BSSoverSpace"; version="0.1.0"; sha256="117av0y5bw44z6293fvbxmf1xqhar7c4lf5z09xrs78dn1xdsnbs"; depends=[expm rSPDE SpatialBSS]; }; BSSprep = derive2 { name="BSSprep"; version="0.1"; sha256="0dkhx8vx9kg902i6nzkzbighf2szq12l0p8iwinlpb2qdf526lk6"; depends=[Rcpp RcppArmadillo]; }; BSW = derive2 { name="BSW"; version="0.1.1"; sha256="0l6sw8lyk9mxfdw4s72hz6a0b30gi2a2vlcndkgahjlym6i5bz83"; depends=[Matrix matrixStats quadprog]; }; BSagri = derive2 { name="BSagri"; version="0.1-10"; sha256="096l2ilr4x2fbjxchkksxkbiyaf7wwdmzn4xyjx001w873x9dgf6"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; }; @@ -386,10 +390,8 @@ in with self; { BWGS = derive2 { name="BWGS"; version="0.2.1"; sha256="1473lvkmpf2dsgnccwl5a8wp9yvddciqdql4naba4lwghimxy39w"; depends=[BGLR brnn e1071 glmnet randomForest rrBLUP stringi]; }; BWStest = derive2 { name="BWStest"; version="0.2.2"; sha256="02amzlfprmw5pyis0dg0kg0x8xqh50a4vfdcxxmklrzik3b1vzzs"; depends=[memoise Rcpp]; }; BaM = derive2 { name="BaM"; version="1.0.3"; sha256="1mfbz8hp6cd170d5y6iva2dbd31rlg6z2dgnfvjp9myqa4cjy40y"; depends=[MASS mice]; }; - BaPreStoPro = derive2 { name="BaPreStoPro"; version="0.1"; sha256="0zyyyrr5h8dhjsmgaii8jmb8ignvixpc9nzbfishw9yymjswvm57"; depends=[]; }; BaSTA = derive2 { name="BaSTA"; version="1.9.5"; sha256="09wvfg44g9j3gq9arkm2ajm8l4y7gna4fh49ihvmjzqdvsl6gkq6"; depends=[snowfall]; }; BaSkePro = derive2 { name="BaSkePro"; version="0.1.0"; sha256="06wnl128anr0isq07qn2xr426c8iybmrbixz93hxx1pshcm64f37"; depends=[MASS]; }; - BacArena = derive2 { name="BacArena"; version="1.8.2"; sha256="1fv3hmr8frqgdl22cvp5w5089ppmqzw42llw2ls054dvsdadlqm9"; depends=[deSolve ggplot2 glpkAPI igraph Matrix plyr R_matlab Rcpp RcppArmadillo RcppEigen ReacTran reshape2 stringr sybil]; }; BalanceCheck = derive2 { name="BalanceCheck"; version="0.2"; sha256="0aal641vfbjk3w6ipwbqqmm9nnxs962hjmpph9wnqaqk5r6s7brs"; depends=[ade4 mvtnorm]; }; BalancedSampling = derive2 { name="BalancedSampling"; version="1.6.3"; sha256="0sarc0xmlg7w4j125i1igbwrqdwfxxb5jcdl44b70q672y6z30vr"; depends=[Rcpp SamplingBigData]; }; Ball = derive2 { name="Ball"; version="1.3.12"; sha256="103lm9mlrqlqqn40bj4bsw0g9in5vka6q4kpqqzw6y3pbgd6596p"; depends=[gam mvtnorm survival]; }; @@ -406,6 +408,7 @@ in with self; { BatchJobs = derive2 { name="BatchJobs"; version="1.9"; sha256="0xsw25j2ks9bqgz189qdcyj8hzz93snknlik83nj04s6vy0w7aax"; depends=[backports BBmisc brew checkmate data_table DBI digest RSQLite sendmailR stringi]; }; BayLum = derive2 { name="BayLum"; version="0.2.1"; sha256="0h0x18al2rqs6wjf4jayc1qv8lkn7rvkbjmr5h1gcggn2c4byyjn"; depends=[ArchaeoPhases coda hexbin KernSmooth Luminescence rjags runjags]; }; BayesARIMAX = derive2 { name="BayesARIMAX"; version="0.1.1"; sha256="1rcfq0r8sqiqs65mbpcr8i4667cdb50k6bx6wdh9spr0djh8gfv0"; depends=[coda forecast]; }; + BayesBEKK = derive2 { name="BayesBEKK"; version="0.1.1"; sha256="1vlljv7xdfvbrbxqdi91xrz1aga04aa1pb23kvnmahm2s261map1"; depends=[coda MTS mvtnorm]; }; BayesBP = derive2 { name="BayesBP"; version="1.1"; sha256="043msccrins1smaizmf7qc6q1cyjdzirw2ygnvi56lskib1cls7m"; depends=[iterators openxlsx]; }; BayesBinMix = derive2 { name="BayesBinMix"; version="1.4.1"; sha256="1b18qg0mjbmrilwqffrq33gw04fzask2xgj1bp4cli51cjf2slf7"; depends=[coda doParallel foreach label_switching]; }; BayesCACE = derive2 { name="BayesCACE"; version="1.2.3"; sha256="12vw401d692x2692sykhngi5fk8l6z5724lym97zz9z2wyj29zyk"; depends=[coda forestplot lme4 metafor Rdpack rjags]; }; @@ -427,14 +430,15 @@ in with self; { BayesLogit = derive2 { name="BayesLogit"; version="2.1"; sha256="0w3bzk39sxdskwikcz5i0xwfsll4sqgkpr8vw8jvzlcy6dl3yhis"; depends=[]; }; BayesMFSurv = derive2 { name="BayesMFSurv"; version="0.1.0"; sha256="1yxxzwjh1fgfh7qkzf9dfm3x0vbgb0v4p6bf6b5w14kvm06rzhkg"; depends=[coda FastGP MCMCpack mvtnorm Rcpp RcppArmadillo]; }; BayesMRA = derive2 { name="BayesMRA"; version="1.0.0"; sha256="005pygpa8bmr153naxnag7kn876lqwq34d8pzbj954nivlxl4zaw"; depends=[fields igraph Matrix mvnfast Rcpp RcppArmadillo spam]; }; - BayesMallows = derive2 { name="BayesMallows"; version="1.2.0"; sha256="1dgvrr6ihfxrvpp5s2fmbl4kp8sh0xvpjggv47gb2c917ppjpjrq"; depends=[cowplot ggplot2 HDInterval igraph PerMallows Rcpp RcppArmadillo Rdpack relations rlang sets testthat]; }; + BayesMallows = derive2 { name="BayesMallows"; version="1.2.1"; sha256="100mfsar76yk8cqp55r6lwd973l8s7yg249vfssx327a31rh665m"; depends=[cowplot ggplot2 HDInterval igraph Rcpp RcppArmadillo Rdpack relations rlang sets testthat]; }; BayesMassBal = derive2 { name="BayesMassBal"; version="1.1.0"; sha256="1cgcx8kvn0bmn8kmq8ri3k98yx085d2qndislbwhn833ws6vkl88"; depends=[coda HDInterval LaplacesDemon Matrix pracma Rdpack tmvtnorm]; }; BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9.1"; sha256="19kf39881q00pap9afwvvggk4s4w3qpz17b7065nig1mvk8dnp8r"; depends=[survival]; }; BayesMultMeta = derive2 { name="BayesMultMeta"; version="0.1.1"; sha256="09x41r5lhr2dq56b05f0aj8v4s7084d4z90qjqwdkv8zgk664ki0"; depends=[assertthat Rdpack]; }; BayesMultiMode = derive2 { name="BayesMultiMode"; version="0.1.1"; sha256="0kjv9snqnpamb0ph6qdimn1zdyp961yfi98xmbdy5dcqd5jcy3jg"; depends=[dplyr ggh4x ggplot2 ggpubr gtools magrittr Rdpack stringr tidyr]; }; BayesNSGP = derive2 { name="BayesNSGP"; version="0.1.2"; sha256="0va4gvyfwfdk3yvhdyxc49qlmzxfblwlmwqh79b93zkv8239kkk1"; depends=[FNN Matrix nimble StatMatch]; }; BayesNetBP = derive2 { name="BayesNetBP"; version="1.6.1"; sha256="1c6a82qlcrpbb2c4zp3gk24wcgw6x62lm8hm6n2l1r307dxm2rpb"; depends=[bnlearn doBy fields graph igraph RColorBrewer]; }; - BayesPPD = derive2 { name="BayesPPD"; version="1.0.7"; sha256="1px8qkkranycj9q3ym7cj3g24y0wkayvp23175x1xp1i3k9k2ray"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; + BayesOrdDesign = derive2 { name="BayesOrdDesign"; version="0.1.2"; sha256="1417zd1n5sip999n6q6bgs85c0000ksl73a4p94y0lmdn27i8pmj"; depends=[coda ggplot2 gsDesign madness ordinal R2jags rjags rjmcmc schoolmath superdiag]; }; + BayesPPD = derive2 { name="BayesPPD"; version="1.1.0"; sha256="0nyzkg2lcvfk61xmxv7fjz626ik5bf9dbxfh6zyvjd9kjzw9kgdl"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; BayesPieceHazSelect = derive2 { name="BayesPieceHazSelect"; version="1.1.0"; sha256="0znbmv7crqycdx75jh02h6z8d6cifjszbrldv2yva4mkjxsydag5"; depends=[mvtnorm]; }; BayesPiecewiseICAR = derive2 { name="BayesPiecewiseICAR"; version="0.2.1"; sha256="1qrmw7zmygdzz84p76hyh2d8dx88b8xhbbd7radqm39g35zq5wz6"; depends=[mvtnorm]; }; BayesPostEst = derive2 { name="BayesPostEst"; version="0.3.2"; sha256="0r05by4w80j6hb22v3ibj686ixxbj7lkxq499fciz5lqs4lxzf3h"; depends=[brms carData caTools coda dplyr ggplot2 ggridges HDInterval MCMCpack R2jags R2WinBUGS reshape2 rjags rlang ROCR rstanarm runjags texreg tidyr]; }; @@ -454,9 +458,9 @@ in with self; { BayesTree = derive2 { name="BayesTree"; version="0.3-1.4"; sha256="0saca1ln582szqzc2c78z24b1lszzhc9hvsin73kb7r2dlg5ciii"; depends=[nnet]; }; BayesTreePrior = derive2 { name="BayesTreePrior"; version="1.0.1"; sha256="13igmvw1wj8kzfijzsrhdqr52kv4vqrm91i71ay6f7jnkry3spaw"; depends=[]; }; BayesTwin = derive2 { name="BayesTwin"; version="1.0"; sha256="026blnhihbx9bpd63mxhbp0kpvj0lwbj7mg72alyfr2jnrh1n3lp"; depends=[coda foreign matrixStats rjags]; }; - BayesVarSel = derive2 { name="BayesVarSel"; version="2.0.1"; sha256="1107amhj3bclc434qizffjfmsa2w36qkp6gq7vgl0hwv0ncc0vyn"; depends=[MASS mvtnorm]; }; + BayesVarSel = derive2 { name="BayesVarSel"; version="2.2.3"; sha256="0kdi1v7wi22p83fl7ldyzhc6gh4pn8ig339yz7a36wl5xr80cij0"; depends=[MASS mvtnorm]; }; BayesX = derive2 { name="BayesX"; version="0.3-1.1"; sha256="0630p904fba4ink1rkccarhlqkz73fxqiy255jc5vb1qi2awl5vd"; depends=[coda colorspace maptools shapefiles sp]; }; - BayesXsrc = derive2 { name="BayesXsrc"; version="3.0-2"; sha256="04p17d87b2gg3p08jmdmg570ppdzci8r4qxcq115qs58bvqih47v"; depends=[]; }; + BayesXsrc = derive2 { name="BayesXsrc"; version="3.0-3"; sha256="1c598sir81xpb35famip6lcfr4cnvm903f1vhajjz04yd13fbwh9"; depends=[]; }; BayesianGLasso = derive2 { name="BayesianGLasso"; version="0.2.0"; sha256="09yb1qqx6qlsspk3ndrcqxy0956iqznw0rmyvqxgxxp3zd3y21xp"; depends=[MASS statmod]; }; BayesianLaterality = derive2 { name="BayesianLaterality"; version="0.1.1"; sha256="1b8ndwnwsj2wzbjp3rivdsx5nsfg2rgv6mnlyp7jxaksxvf4ray7"; depends=[dplyr purrr Rdpack rlang tidyr tmvtnorm]; }; BayesianMediationA = derive2 { name="BayesianMediationA"; version="1.0.1"; sha256="1ygc0xhk7mk7pkqn0v9n23j1m75rr1r2ar30r386c1av3jh7krnw"; depends=[car gplots lattice R2jags survival]; }; @@ -465,13 +469,13 @@ in with self; { BayesianReasoning = derive2 { name="BayesianReasoning"; version="0.4.1"; sha256="0j8fzn6xza3vg7qbfxwhjncll9yx985660dr75y9qhhz84jis3dv"; depends=[dplyr ggforce ggplot2 magrittr reshape2 tibble tidyr]; }; Bayesiangammareg = derive2 { name="Bayesiangammareg"; version="0.1.0"; sha256="0b0fqmig7vgmlrq2884q0apfd89nn5k4dj8rqjizkkbw4qpzmylb"; depends=[mvtnorm]; }; Bayesiantreg = derive2 { name="Bayesiantreg"; version="1.0"; sha256="0m8snwhjskwxdm0a2wsmf1j7d0xxvg4sh0ix64zss71l610wica7"; depends=[MASS Matrix mvtnorm]; }; - Bayesrel = derive2 { name="Bayesrel"; version="0.7.4.4"; sha256="0i5kma649f2f079205kki05js0i1aw2j10aj6fgmg3mjj8q9cn0p"; depends=[coda LaplacesDemon lavaan MASS Rcpp RcppArmadillo Rdpack]; }; + Bayesrel = derive2 { name="Bayesrel"; version="0.7.5"; sha256="06y3f69hccpf92mrdw03alcmnn5r4rg9svcqyvz44x1hjn02l2ah"; depends=[coda LaplacesDemon lavaan MASS Rcpp RcppArmadillo Rdpack]; }; BcDiag = derive2 { name="BcDiag"; version="1.0.10"; sha256="1gyinmx5wn2kk70hiy28ghilkhfirfjbfqdrqq5h3wfb4khnq6pz"; depends=[fabia]; }; Bchron = derive2 { name="Bchron"; version="4.7.6"; sha256="1s8bx9a5rpcrw0msnjf565crz3d2fykvy5fj1chbqxzjh7qm865w"; depends=[checkmate coda dplyr ggforce ggplot2 ggridges magrittr MASS mclust purrr scales stringr]; }; BeSS = derive2 { name="BeSS"; version="2.0.3"; sha256="09zxpzcaj13fn38cwd0xk0254aphb3jn1wdwn9hiq9vapfsgn0dx"; depends=[glmnet Matrix Rcpp RcppEigen survival]; }; BeastJar = derive2 { name="BeastJar"; version="1.10.6"; sha256="0581q9m7lb681d12vld231vn6wqv5s2sqkvav4fd0xllvjighlx7"; depends=[rJava]; }; BeeGUTS = derive2 { name="BeeGUTS"; version="1.0.0"; sha256="0b0r8srh68m2kxdyvfx5kxrpchish5la7h44wkxfa59gcbsg96rc"; depends=[BH cowplot data_table dplyr ggplot2 gridExtra magrittr odeGUTS Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tidyr]; }; - Benchmarking = derive2 { name="Benchmarking"; version="0.30"; sha256="0jmdp8qkbg0vjxbvx7mjh3l0yfq2zs63g6bsm6ksi56yvx7l9rvi"; depends=[lpSolveAPI quadprog Rcpp ucminf]; }; + Benchmarking = derive2 { name="Benchmarking"; version="0.31"; sha256="0gg4yay098ga08ns5ybn7s467prwbq0a94a0nfah30jy36ggdfs2"; depends=[lpSolveAPI quadprog Rcpp ucminf]; }; BenfordTests = derive2 { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; }; Bergm = derive2 { name="Bergm"; version="5.0.5"; sha256="0plidwnyh38hrkbd3ild476f54bz6i70r0h3chxh3wp35rl04ikl"; depends=[coda ergm Matrix matrixcalc MCMCpack mvtnorm network Rglpk statnet_common]; }; Bessel = derive2 { name="Bessel"; version="0.6-0"; sha256="0iwm08nhlivi4zwcqdi296a1l4n4lfanfxhaysh9vcsyk1kpiacf"; depends=[Rmpfr]; }; @@ -493,7 +497,7 @@ in with self; { BiasedUrn = derive2 { name="BiasedUrn"; version="2.0.8"; sha256="0mmq8zf52p6y76nqm0fcvvg8bdlrfl12mlfr9fznz9zvm26pypi0"; depends=[]; }; BibPlots = derive2 { name="BibPlots"; version="0.0.8"; sha256="0zvbyh8spr0ywj64b2rc8jcq4fgn87858km4mkkh17g30ympg767"; depends=[]; }; BifactorIndicesCalculator = derive2 { name="BifactorIndicesCalculator"; version="0.2.2"; sha256="1vnwksw0j4lc2knlcmm5748pf4d7r44sn34s1mrv9p50hlnkk85p"; depends=[lavaan mirt mnormt MplusAutomation tidyr]; }; - BigQuic = derive2 { name="BigQuic"; version="1.1-11"; sha256="1dxzkj26hd05mi02i35k7dknlikjfbsgvjrqwf42k3kjpf501xh4"; depends=[Matrix Rcpp scalreg]; }; + BigQuic = derive2 { name="BigQuic"; version="1.1-13"; sha256="14mz9ry72zc4c0fhc59dima66qnksr1masvhzm1j8z8r11w7qjhd"; depends=[Matrix Rcpp scalreg]; }; BigVAR = derive2 { name="BigVAR"; version="1.1.1"; sha256="1pv2xc6j7szcaqqqjnriaxd17snls37b7nckmk97dan4zxc2vr6v"; depends=[abind lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; BimodalIndex = derive2 { name="BimodalIndex"; version="1.1.9"; sha256="1m1dcj0ryjicaqjlkch7aymsklmvjvn2dvnbssi1cpi54bzn8l7g"; depends=[mclust oompaBase]; }; BinGSD = derive2 { name="BinGSD"; version="0.0.1"; sha256="0ygr5na7s82xa6vv9f3j6ns5sfhdacyykl1fg422lpkwbss39dnn"; depends=[mvtnorm]; }; @@ -508,22 +512,19 @@ in with self; { BinaryEPPM = derive2 { name="BinaryEPPM"; version="2.3"; sha256="0fydh3pp7y0glk2rhihcslzx10hgn5la922jbnqzg2nplvzv7ybj"; depends=[expm Formula lmtest numDeriv]; }; BinarybalancedCut = derive2 { name="BinarybalancedCut"; version="0.2"; sha256="1rs7x7ggqzaz9r2912g0fi9x7przd8gjy6pianx457w5f39fqx4v"; depends=[ggplot2 reshape2]; }; BioCircos = derive2 { name="BioCircos"; version="0.3.4"; sha256="1gl57r47p5z1wzs94xzc26j2r8z5hpqr4163b01x6jwzvbrlfwhz"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; }; - BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; }; BioInsight = derive2 { name="BioInsight"; version="0.3.1"; sha256="129w9643l01y316hm0qcsmxzh5lsdmq6xmiz4rhmdh0dcnw2s93n"; depends=[edgeR knitr limma RColorBrewer wordcloud]; }; BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; }; BioPET = derive2 { name="BioPET"; version="0.2.2"; sha256="0zgq7i37d0rnjhlkcrl44x62vhz0njsv2fldm64j9r4wc02z1q9n"; depends=[ggplot2 gridExtra pROC VGAM]; }; BioPETsurv = derive2 { name="BioPETsurv"; version="0.1.0"; sha256="0svwf8pzvlmlp8aacf70hzlg2h81m6lyhh4p73ixqw5v9bnyq6m0"; depends=[ggplot2 gridExtra survival]; }; BioProbability = derive2 { name="BioProbability"; version="1.0"; sha256="051m761zf079s0p4q0ambwqc22qjz2yajxrsmnjnxvqiaadaj1q7"; depends=[]; }; BioRssay = derive2 { name="BioRssay"; version="1.1.0"; sha256="0bs05vkidf7rfhb9s9vby7k4q9w7vwanlvk034kspqp4ydkhpm5n"; depends=[colorspace]; }; - BioStatR = derive2 { name="BioStatR"; version="3.1.2"; sha256="1fs5hzsb770ygcysmwl8dyfkrq3nwhsfw4jd73gbdw3x8dqxc6c4"; depends=[ggplot2]; }; + BioStatR = derive2 { name="BioStatR"; version="4.0.0"; sha256="0gfwjvxbgfaw7mrbac011x09lxcmsdbp3ljc36hpfa54gqj2ckkc"; depends=[ggplot2]; }; BioVenn = derive2 { name="BioVenn"; version="1.1.3"; sha256="0nwqfb65vhr2246w17nv27v186gzl5n3jxnqx7r9rq525qvyx0rg"; depends=[biomaRt plotrix svglite]; }; BiocManager = derive2 { name="BiocManager"; version="1.30.19"; sha256="1qhq1k1sr23bi2kmnd99mjs3ns0c2p20pmr2iq8a6bxbb0fap5v8"; depends=[]; }; Biocomb = derive2 { name="Biocomb"; version="0.4"; sha256="0jqfac81r5731m0i9jq7v5ns9263p8r7i03jyz10y915kfr6ikh6"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; Biodem = derive2 { name="Biodem"; version="0.5"; sha256="1phnq6zq96i6z7jj196png3spjpbbx5p2s8iya0vvbfik12ivzkc"; depends=[]; }; BiodiversityR = derive2 { name="BiodiversityR"; version="2.14-4"; sha256="05080cfqcmhxnbd4fyxhdd2kxp4ps413mk44wdh7hijayk4df7q0"; depends=[ggplot2 Rcmdr vegan]; }; Bioi = derive2 { name="Bioi"; version="0.2.10"; sha256="1ay8889490nfhxhh72fvk9z4h58xknm2b145xhbx2wbzj65zf9ib"; depends=[assertthat dplyr igraph Rcpp]; }; - Biolinv = derive2 { name="Biolinv"; version="0.1-3"; sha256="1c081rhbgl6n76p2knaiyvjx0l02slix92vgfl2spss5cb9qzkln"; depends=[classInt fields raster sp spatstat spatstat_core spatstat_geom]; }; - Biopeak = derive2 { name="Biopeak"; version="1.0"; sha256="1l08m1jl8yygbdfzk8klpj1q2m7icvxi98vmk7akxs0sswjc6wd2"; depends=[cluster dbscan factoextra gplots RColorBrewer]; }; Bios2cor = derive2 { name="Bios2cor"; version="2.2.1"; sha256="0xj7ab9a463p4a67y0hlv6mfd08xf8didkn2mwrfa7gxjqqvix4z"; depends=[bigmemory bio3d circular igraph]; }; Biostatistics = derive2 { name="Biostatistics"; version="1.0.4"; sha256="1fcrj53rqg7mdhrrsl95l0n6hycb0863isch2f6zzsqdqbxhq7dh"; depends=[learnr]; }; BipartiteModularityMaximization = derive2 { name="BipartiteModularityMaximization"; version="1.22.415.2"; sha256="05a00zwhdmh614m937mx6alarac5inrzp78xjhqhwf26gvg7lpb9"; depends=[Rcpp]; }; @@ -555,22 +556,23 @@ in with self; { BoneProfileR = derive2 { name="BoneProfileR"; version="2.4"; sha256="0mm2vjg43p9abfydaw7qw0q9cwpvzxic914rpdk2dshyva6dxyx5"; depends=[HelpersMG imager knitr rmarkdown shiny]; }; BoolFilter = derive2 { name="BoolFilter"; version="1.0.0"; sha256="14z4fzf8p4wgi939qs6v39a3xizccjcx7j4szsydllpkvxbwggbw"; depends=[BoolNet Rlab]; }; BoolNet = derive2 { name="BoolNet"; version="2.1.7"; sha256="1b87ncwz1bsjym328qyjwhxqi7c6x05y6g1nc43y2fz5l5312nmv"; depends=[igraph XML]; }; - Boom = derive2 { name="Boom"; version="0.9.10"; sha256="1w513z3bqr9fbvml1qycaaivsvwyx77wq11w76dzggddwgwisg20"; depends=[MASS]; }; + Boom = derive2 { name="Boom"; version="0.9.11"; sha256="17kp3vla2z9kgcqgwcslcp0wl7k1k2rbc8nr3b785hv23gww11bi"; depends=[MASS]; }; BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="1.2.5"; sha256="1y1bn9490g3qvvjvxk8sc0312hmzwj0n5rg9fsa7k4av0yasv25w"; depends=[Boom]; }; BoostMLR = derive2 { name="BoostMLR"; version="1.0.3"; sha256="0gk8jf04qda1qsc6987d8nfa453v9cqkjsvvrrg68yx3fd96m8aj"; depends=[nlme Rcpp RcppArmadillo]; }; BootMRMR = derive2 { name="BootMRMR"; version="0.1"; sha256="07am80603pv1dh5ma3zb0idnslkzm5m3ym8sd1nhkh8zbc6qqmzs"; depends=[]; }; BootPR = derive2 { name="BootPR"; version="0.70"; sha256="1bhdmbg3i7r9v563v84sh4kcl7r036h6aqrwjwr9r3r56l3834bb"; depends=[]; }; BootWPTOS = derive2 { name="BootWPTOS"; version="1.2.1"; sha256="1s6qvc2nvkqfxl8d4cy7ckvn6l0svq85g274pvjjxg8f883hax0j"; depends=[tseries wavethresh]; }; BootstrapQTL = derive2 { name="BootstrapQTL"; version="1.0.5"; sha256="04lyr9x6lz4q5y70p92ffdil2i9f1fsykw5wh6wsv0qcqypdmawy"; depends=[data_table foreach MatrixEQTL]; }; + Boov = derive2 { name="Boov"; version="1.0.0"; sha256="0vj57rlgabgs08sxi8vghkij22av99mbihrqw69d99xy8vjaf277"; depends=[BH data_table gmp PolygonSoup Rcpp RcppCGAL RcppEigen]; }; Boptbd = derive2 { name="Boptbd"; version="1.0.5"; sha256="1p786avc37yq5g01zh6sqx7b1rvbxrh6gbxsad4bdvr12cjdsss6"; depends=[igraph MASS Matrix]; }; - Boruta = derive2 { name="Boruta"; version="7.0.0"; sha256="0y2w4wb45kfnzrxcrdsiwgal9fsnlr3wad1sqdc70qv8gp921xbg"; depends=[ranger]; }; + Boruta = derive2 { name="Boruta"; version="8.0.0"; sha256="1irx7qg1sw69ggsk4jgxfd3pp741kd944fipnda1qbcbphg5prrq"; depends=[ranger]; }; BosonSampling = derive2 { name="BosonSampling"; version="0.1.3"; sha256="0dxvjdvzv2b3763x4wrkw02q57l42286w9bg2xhcngmcpdhnkg51"; depends=[Rcpp RcppArmadillo]; }; BoundEdgeworth = derive2 { name="BoundEdgeworth"; version="0.1.1"; sha256="1lj98v3h0hlv22s76gcf5bbyq2qnl692hagrprxjsyd79slc6gk1"; depends=[expint mathjaxr]; }; BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="7.0.3"; sha256="07vfaxgxnzj3dlv116x32bndzqmdbpc5szpjw73a9km8f2fkkb2k"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.1-2"; sha256="0vss3ib74cz2zn1afmrvllawghj9z2ay4x1ysvk4rqvjmiia4a2i"; depends=[brglm gtools lme4 qvcalc]; }; BrailleR = derive2 { name="BrailleR"; version="0.32.1"; sha256="0hnwfn3z9d22jp9xqgz7sz3yqlay863ys9czvd07xyscqpzq973k"; depends=[devtools dplyr extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr mathjaxr moments nortest reticulate rlang rmarkdown roloc rolocISCCNBS whisker XML xtable]; }; BrainCon = derive2 { name="BrainCon"; version="0.2.0"; sha256="0a95jlbll4smi32z7ykf64cyrkscnb7shzj10i1p1hsf90dwi7sv"; depends=[glmnet MASS]; }; - BranchGLM = derive2 { name="BranchGLM"; version="1.3.2"; sha256="0isxc8r6i9iiklm9kwvk7lp9yp9kbz2s3jsk4d4l50z2vrkkw9qd"; depends=[BH Rcpp RcppArmadillo]; }; + BranchGLM = derive2 { name="BranchGLM"; version="2.0.0"; sha256="16f1q3jrg07kd89syjngg844m8x5r4fk0j01w8iisbi7pk17x20v"; depends=[BH Rcpp RcppArmadillo]; }; Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; }; BrazilMet = derive2 { name="BrazilMet"; version="0.2.0"; sha256="0pcr665j4balmcm4sq6l19nmhpbs7ayw5dljsdxr91bn6srb33b3"; depends=[dplyr readxl stringr]; }; BreakPoints = derive2 { name="BreakPoints"; version="1.2"; sha256="125fvzkmfnriyd4y4nywj5ihm766xlsyi7dpnq57fa9d38ffbyf2"; depends=[MASS zoo]; }; @@ -588,16 +590,16 @@ in with self; { Bvalue = derive2 { name="Bvalue"; version="1.0"; sha256="17zlllzjrcq4grggal3hlg384990n62wnflr2g21fa6hcnglwy7d"; depends=[]; }; BwQuant = derive2 { name="BwQuant"; version="0.1.0"; sha256="0pna0ppj9hkxpc2mbyy0ss7zrl5y736h5xsfkhmqr0389vmgibrj"; depends=[KernSmooth nleqslv quantreg]; }; C19dNUTS = derive2 { name="C19dNUTS"; version="1.0.1"; sha256="09iclbkgaxz946nj4ppdzyr5ssipcip4nscxs10j0209frjgjhap"; depends=[]; }; - C443 = derive2 { name="C443"; version="3.2.3"; sha256="0zjnwkn17213x2zhflmmrplp6kr8zg04pfynpkwsgmf4rqyfyjvx"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr qgraph RColorBrewer reshape2 rpart]; }; - C50 = derive2 { name="C50"; version="0.1.6"; sha256="1d4cy6xps17c97r5hipa2ar9hrw17iq1ld7afv5fd1v2cpic086c"; depends=[Cubist partykit]; }; + C443 = derive2 { name="C443"; version="3.3"; sha256="1ngk95m67aplpvcva02y3njwv4gcdh4yf0jgkdjzw6prg4h70jla"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr randomForest ranger RColorBrewer rpart]; }; + C50 = derive2 { name="C50"; version="0.1.7"; sha256="1q76bnnw79i7q7afxdh2pdampbacbkvscc5q8r78jailx5cr18dy"; depends=[Cubist partykit]; }; CA3variants = derive2 { name="CA3variants"; version="3.3.1"; sha256="0nc82xw341bv01knr2ksyifl0bkriwg4dfkw0fdkzh0b6dw2wfzr"; depends=[ggforce ggplot2 ggrepel gridExtra multichull plotly]; }; CACIMAR = derive2 { name="CACIMAR"; version="1.0.0"; sha256="0fdi2ls0j10fky3jygqx93h8m1957cdbn1vxdi69bq08xf2c5n5h"; depends=[dplyr pbapply pheatmap psych reshape2 ROCR Seurat viridisLite]; }; CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; }; CADStat = derive2 { name="CADStat"; version="3.0.8"; sha256="0wdglw1vyd5gz70r9ma0mwshvizv39nb4ahp8pvr70c4qqzsfhc0"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; }; - CAISEr = derive2 { name="CAISEr"; version="1.0.16"; sha256="08br6hdpgf9y2fix299diwd8r3q4gylpbzll4knpxq0vi18a3hz3"; depends=[assertthat ggplot2 gridExtra pbmcapply]; }; + CAISEr = derive2 { name="CAISEr"; version="1.0.17"; sha256="01gxxq9bfrrishzawmqh47byhc3szfss9bmcsh1p2gi9ml6aqcay"; depends=[assertthat ggplot2 gridExtra pbmcapply]; }; CALANGO = derive2 { name="CALANGO"; version="1.0.12"; sha256="1v5dkcakphyzlan4byrxp5kyhaysrpi6bzivx814hhkwx08wfm02"; depends=[ape assertthat BiocManager dendextend DT ggplot2 heatmaply htmltools htmlwidgets knitr nlme pbmcapply pkgdown plotly rmarkdown taxize]; }; CALF = derive2 { name="CALF"; version="1.0.17"; sha256="021x1gp0493g6qnfih755c0xcddz77i3p22bgjlx1lpzgqmrgrki"; depends=[data_table ggplot2]; }; - CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-6"; sha256="0ghi6pkv9ki0iz4lkli3hkrsk6xiph2ha2pij6dg4wi7mcjdhsbi"; depends=[mice mvtnorm randomForest]; }; + CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-7"; sha256="1fspn6wgr0kc7j4ixx24c706kzrgjhi1b1w28izpfxm4r89zk08s"; depends=[mice mvtnorm randomForest]; }; CAMAN = derive2 { name="CAMAN"; version="0.75"; sha256="1r6bxqg9wrllznrm5n5a5kcskcj6cd9l5lm5hkyq1v2vb751z6i2"; depends=[mvtnorm sp]; }; CAMML = derive2 { name="CAMML"; version="0.2.3"; sha256="0qzp5hmsrq89jvizsvjrp1q01f9nc3fbn7ka964xp75f6pvckph6"; depends=[AnnotationDbi BiocManager edgeR MASS Matrix org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db Seurat SeuratObject VAM]; }; CANSIM2R = derive2 { name="CANSIM2R"; version="1.14.1"; sha256="1dnzbd9lyqj3w80lx12qxcsbmv8wy6hxknyi5ijp99cfv7kaq1kc"; depends=[downloader Hmisc reshape2]; }; @@ -608,11 +610,12 @@ in with self; { CARlasso = derive2 { name="CARlasso"; version="0.1.2"; sha256="05r5n5bh0fpwfigr6czh9pg29zyrw73idfvs9qm8vr3dvcmvc42r"; depends=[coda ggplot2 ggraph igraph MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; CASCORE = derive2 { name="CASCORE"; version="0.1.1"; sha256="19v0cki0hdnw5nakakpahc5yz32ih379kagpv2aygzgq9mfwnfam"; depends=[igraph pracma reshape2]; }; CASMAP = derive2 { name="CASMAP"; version="0.6.1"; sha256="1447d4gflan2093fb68inb2ysx5svb9vhnjc7lnkgpjsiam4p8yy"; depends=[Rcpp]; }; + CASMI = derive2 { name="CASMI"; version="1.0.0"; sha256="0nhjkvaa27l8j390sl220ckkjbgqj3dm8pnvw58fnprjhi9203sc"; depends=[entropy EntropyEstimation]; }; CAST = derive2 { name="CAST"; version="0.7.0"; sha256="0kvipagrf7qsp6wjmh1vjzdjpj9px9xn8a8b32h9cxq6fpxzd14j"; depends=[caret data_table FNN ggplot2 lattice plyr reshape zoo]; }; CATT = derive2 { name="CATT"; version="2.0"; sha256="12xdspl1gbf51snyrl44nn7alfyccdfihibkgvzr66lrby8b8fhg"; depends=[]; }; CATTexact = derive2 { name="CATTexact"; version="0.1.1"; sha256="07ciln6cfvqya7dwwn6mhd9lk2833hypm4badizgfi2k749d1p00"; depends=[]; }; CAinterprTools = derive2 { name="CAinterprTools"; version="1.1.0"; sha256="07rvi91ysqyfwagmip0cnqjahv1n8slicd5hznqf5v3l841xh7p7"; depends=[ca classInt cluster FactoMineR ggplot2 ggrepel Hmisc RcmdrMisc reshape2]; }; - CAvariants = derive2 { name="CAvariants"; version="5.6"; sha256="1rv3r27m43q8z9hiac5fj3kx77j0sfmcgxwcl6mdfgx0jwq7pi3s"; depends=[ggforce ggplot2 ggrepel gridExtra plotly]; }; + CAvariants = derive2 { name="CAvariants"; version="5.7"; sha256="0jxz0db034fhiqbfbpzqakrmlibay9rzyxavprvans93k45zigfs"; depends=[ggforce ggplot2 ggrepel gridExtra plotly]; }; CB2 = derive2 { name="CB2"; version="1.3.4"; sha256="0431bd956hmkrhs9x845vjwbzzwzd7n9nfx9y95mv6qv84zd4wv2"; depends=[dplyr ggplot2 glue magrittr metap pheatmap R_utils Rcpp RcppArmadillo readr stringr tibble tidyr]; }; CBCgrps = derive2 { name="CBCgrps"; version="2.8.2"; sha256="0z34vcdq5lp1l15l3a67lpvfla0g0qsb5ijbc9h575h7fpf28jqf"; depends=[nortest]; }; CBPS = derive2 { name="CBPS"; version="0.23"; sha256="0bdkx7phi58200jgijqmv5d7v2kiksj07sxx2sjmkd1dcjdy13zd"; depends=[glmnet MASS MatchIt nnet numDeriv]; }; @@ -620,7 +623,7 @@ in with self; { CBT = derive2 { name="CBT"; version="1.0"; sha256="13h6sf7w03nfq2arqymwww13ywnv9xnqbqazlzn856mj3ggaqda7"; depends=[]; }; CC = derive2 { name="CC"; version="1.0"; sha256="189si37ggichqmzy8m686zw1cijix7yfy8ma5iqpnq1q9vm3pcvy"; depends=[]; }; CCA = derive2 { name="CCA"; version="1.2.1"; sha256="1l4vp8yd42rpsm40szjfzhvbb5c7kl7yf4346i0940s6gk7bzzi8"; depends=[fda fields]; }; - CCAMLRGIS = derive2 { name="CCAMLRGIS"; version="4.0.1"; sha256="0jfk1ii6001xp2j13dwhb58dy1b7bq5rhmy9fdfyr3ss4kqdnqaq"; depends=[dplyr geosphere magrittr raster sf sp terra]; }; + CCAMLRGIS = derive2 { name="CCAMLRGIS"; version="4.0.2"; sha256="1spjf6rjqqn90c9acdb0z7ysdkzia9fgnwbp4n0cycd3wc7pngf0"; depends=[dplyr geosphere magrittr raster sf sp stars terra]; }; CCM = derive2 { name="CCM"; version="1.2"; sha256="1mhl7yppniybdffylddbbb65n7gmv029fb46wlsxm4yf2xkplmwy"; depends=[]; }; CCP = derive2 { name="CCP"; version="1.2"; sha256="067nf1gag3ya7v9vzcpvallga5dr243q0q07fd370k0zynmhcfby"; depends=[]; }; CCTpack = derive2 { name="CCTpack"; version="1.5.2"; sha256="1kkxsk9x4jz2bvldmba7fsri3zc1cjz15z0xicjmfc7lj72ngdig"; depends=[MASS mvtnorm polycor psych R2jags rjags]; }; @@ -628,11 +631,11 @@ in with self; { CDFt = derive2 { name="CDFt"; version="1.2"; sha256="19axaf3bh9gasnsfamd5ych1jn751scaplgwpmsf3liazcqqpa61"; depends=[]; }; CDLasso = derive2 { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; }; CDM = derive2 { name="CDM"; version="8.2-6"; sha256="1lcq3i5rlyqkc12c26kj0x4fm2gh1jsisp6kbf59y3hjdkiqajhl"; depends=[mvtnorm polycor Rcpp RcppArmadillo]; }; - CDMConnector = derive2 { name="CDMConnector"; version="0.1.0"; sha256="0872k9a2xm6y55qb17hjjsh7kygx0grfkf064i1f9cvmdyw9mw7a"; depends=[arrow checkmate cli DBI dbplyr dplyr glue magrittr pillar purrr readr rlang tidyselect waldo]; }; + CDMConnector = derive2 { name="CDMConnector"; version="0.3.1"; sha256="15nlx4db6pix17l657pacadvbgfll6ky3bczayyjd6jraww32k9q"; depends=[arrow checkmate cli DBI dbplyr dplyr glue jsonlite lifecycle magrittr pillar pkgfilecache purrr readr rlang SqlRender tibble tidyselect waldo withr]; }; CDNmoney = derive2 { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; CDROM = derive2 { name="CDROM"; version="1.1"; sha256="0mvhqs4m8jp39x1rk31a1sqqmfq1avcnasgh8bizlyxx62igmi1b"; depends=[]; }; CDVineCopulaConditional = derive2 { name="CDVineCopulaConditional"; version="0.1.1"; sha256="1wyy324vrwipdsq0p021bj1gdhyxg09g3dkw8wv5v6rfrrs84m9k"; depends=[combinat VineCopula]; }; - CDatanet = derive2 { name="CDatanet"; version="2.0.1"; sha256="0slw0lz0k6706hww7msfkal1nwq1252cnxswpi9b9yjm9qnmj1hs"; depends=[ddpcr Formula formula_tools Matrix Rcpp RcppArmadillo RcppDist RcppEigen RcppNumerical RcppProgress]; }; + CDatanet = derive2 { name="CDatanet"; version="2.0.3"; sha256="0736j23qnds21qsblwh08dj4ylcs70bpqw5pr0hxmnilkk6jgyj2"; depends=[ddpcr Formula formula_tools Matrix Rcpp RcppArmadillo RcppDist RcppEigen RcppNumerical RcppProgress]; }; CEDA = derive2 { name="CEDA"; version="1.1.0"; sha256="1m03l552zql3cqra1r1zdjcw6abpfdhvn3dkbhdhmnmg59fb6bfb"; depends=[dplyr ggplot2 ggprism ggridges ggsci limma mixtools]; }; CEDARS = derive2 { name="CEDARS"; version="1.90"; sha256="1fngyc08kvilfd2d75gjg0s6c5zvjywym35sk568yzxnsz89b7yy"; depends=[fastmatch jsonlite mongolite readr shiny udpipe]; }; CEGO = derive2 { name="CEGO"; version="2.4.2"; sha256="00nc6c1b6ylqlh6hm8lh8nasz7q12pqckdqbf1yq21khki9ldbll"; depends=[DEoptim fastmatch MASS Matrix ParamHelpers quadprog]; }; @@ -641,12 +644,12 @@ in with self; { CERFIT = derive2 { name="CERFIT"; version="0.1.0"; sha256="1mhyn5iyvnqqx881jfvacyxaldvn5q9h1jpsfy14sgkdjf75274s"; depends=[CBPS glmnet partykit randomForest Rcpp RcppArmadillo twang]; }; CEoptim = derive2 { name="CEoptim"; version="1.2"; sha256="0bbjrhl63cbx1rsr5gclbqhjpnjid8ynk2ygaf1chf8z381n7650"; depends=[MASS msm sna]; }; CFAcoop = derive2 { name="CFAcoop"; version="1.0.0"; sha256="1qnqbqh3p8grp6mxhqrwfm1nf1sxhqa6pjxkpf7vk9nx40g815gn"; depends=[Hmisc]; }; - CFC = derive2 { name="CFC"; version="1.1.2"; sha256="0k0685cgsd0lm7id6h216r4x236xn3nqj4h906qn2i0kvwmx4nda"; depends=[abind doParallel foreach Rcpp RcppArmadillo RcppProgress survival]; }; CFF = derive2 { name="CFF"; version="1.0"; sha256="04z3q0s4b1yns5l7lplw8qrcdjzsdy9crnhakyzd6r449hjfsvnz"; depends=[]; }; CFilt = derive2 { name="CFilt"; version="0.2.1"; sha256="1iah41s0pd8s4vmg7r6npsgmfr6mvyp5wfnyimx51fqr2f3narwf"; depends=[]; }; CGE = derive2 { name="CGE"; version="0.3.3"; sha256="0q1fv62159cx9z25488fxf6a6fi1m59hdh60ldypsjwil77q0s3i"; depends=[]; }; CGGP = derive2 { name="CGGP"; version="1.0.3"; sha256="1g70hjpc33dnr6yw42kjhy9ngba05qzk5mr7md6pqhmbx0ykhr6g"; depends=[Rcpp RcppArmadillo]; }; CGManalyzer = derive2 { name="CGManalyzer"; version="1.3"; sha256="1wmp5im18s447rjkj891skrm7558xkqlbx43n9hyxiqg49zq1ng9"; depends=[]; }; + CGNM = derive2 { name="CGNM"; version="0.5.1"; sha256="0li1cg0hxj5i9dxl2s06rwnssiyd2af90g34knmhlpn3f2pzb690"; depends=[ggplot2 MASS]; }; CGP = derive2 { name="CGP"; version="2.1-1"; sha256="05a6gydlb99yk2jpy2hyg4c30hqyp8dg2i9dmbjc1n5cmgpg3im9"; depends=[]; }; CGPfunctions = derive2 { name="CGPfunctions"; version="0.6.3"; sha256="12l3ww9wfrk8i0a63wv5h4ayqj6fj5fz5yvkiskvaaida32vds2m"; depends=[BayesFactor DescTools dplyr forcats ggmosaic ggplot2 ggrepel paletteer partykit purrr rlang scales sjstats stringr tidyr]; }; CHFF = derive2 { name="CHFF"; version="0.1.0"; sha256="0jv75p1bnwsad2vpxf1zwq97al9xxhk2hpnpsilf0jn0w7g9b2d3"; depends=[]; }; @@ -660,7 +663,6 @@ in with self; { CICA = derive2 { name="CICA"; version="0.1.0"; sha256="0f765c1sqvcg11071008vn6gnk0v0lwmlhnqxgqy0r8cw05s2ggq"; depends=[ica NMFN]; }; CIDER = derive2 { name="CIDER"; version="0.99.1"; sha256="0ag2gyrjjyq4r4xssmz05cg1sh8mmq54d5mynhwm5k53zcpk8i8r"; depends=[dbscan doParallel edgeR foreach ggplot2 igraph kernlab limma pheatmap Seurat viridis]; }; CIEE = derive2 { name="CIEE"; version="0.1.1"; sha256="03kq9cp0v41y0r2l9j5imcrsail2xsvlzhhhsrw454d4s9gqdql9"; depends=[survival]; }; - CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; }; CIM = derive2 { name="CIM"; version="1.0.0"; sha256="02l8rspiiv6vj6k0q6wpiazny3f2s4dsivsm7zb9cm90qh1rv2d7"; depends=[]; }; CIMTx = derive2 { name="CIMTx"; version="1.2.0"; sha256="1jx99vh620zqwp7p4bjcxa3n0kg6w6q88kklv9f9x44894mrd56a"; depends=[arm BART cowplot doParallel dplyr foreach ggplot2 magrittr Matching metR mgcv nnet stringr SuperLearner tidyr tmle twang WeightIt]; }; CINE = derive2 { name="CINE"; version="0.1.3"; sha256="0y5xadsvmciv9cqx6sa8qs1ss7zm55l3304gzdaadmqbsnsq75j8"; depends=[dplyr tidyr tidytext tm]; }; @@ -701,12 +703,12 @@ in with self; { COINr = derive2 { name="COINr"; version="1.1.0"; sha256="0vi89kfma2r8wkfxrfi8hb5m6pvhqbl5ja3kzqriwv4qpzg8syyg"; depends=[ggplot2 openxlsx readxl rlang]; }; COLP = derive2 { name="COLP"; version="1.0.0"; sha256="0259s058rn7fyprma5frx7sdjv4qk9hxijpi9xh7qyz5jzzsi660"; depends=[combinat MASS]; }; COMBAT = derive2 { name="COMBAT"; version="0.0.4"; sha256="0m700pl33frdpc9y16y4zyh1ixpardh0r5kmz8a78jrh1acn30id"; depends=[corpcor mvtnorm]; }; - COMIX = derive2 { name="COMIX"; version="0.1.6"; sha256="0x3x09jvplap1wgg4y80gymxzh9mac8np7wmqldhjnmkqs9bwc42"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; - COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.7.0"; sha256="144vf3vfn5msc8p67q65frza8xyi9nqccjq47fnv33w5h0d9wlxj"; depends=[Rcpp]; }; + COMIX = derive2 { name="COMIX"; version="1.0.0"; sha256="0dhc3zb8jkfq8b9vj8m2a9jbd9fc7xxvhz16l8xhz9v5iffgk6hh"; depends=[coda dplyr ggplot2 Rcpp RcppArmadillo RcppEigen RcppNumerical rlang stringr tidyr]; }; + COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.8.0"; sha256="0yaq7mfqcdyp077xhmqd3rx0b77y2rg1yz89q4llgiwfg244y6mp"; depends=[numDeriv Rcpp]; }; CONCUR = derive2 { name="CONCUR"; version="1.4"; sha256="0455jmc8grcpmipcz2rr6zdhxjfi0gd5zj46lyvh75k6wn2p6265"; depends=[CompQuadForm dplyr mgcv]; }; COR = derive2 { name="COR"; version="0.0.1"; sha256="0flir1mwqqs418hwcwdg72a1r89hamf6zd8jaf8g7hm4lp3i1cgf"; depends=[]; }; CORE = derive2 { name="CORE"; version="3.2"; sha256="10y404xkd4pqlh9w5hcx6laxpqy0831v61nacih094m0q6af9brl"; depends=[]; }; - CORElearn = derive2 { name="CORElearn"; version="1.56.0"; sha256="0zdx9ljxjzkj4kbrv856l3jaiv2s7dqycr3b3x7k5g05iv1ic6lv"; depends=[cluster nnet plotrix rpart_plot]; }; + CORElearn = derive2 { name="CORElearn"; version="1.57.3"; sha256="1kgnjl8g2njrc4xnsvz76mjzp2z93klps6k1msni1fsjbg0vvl05"; depends=[cluster nnet plotrix rpart_plot]; }; COST = derive2 { name="COST"; version="0.1.0"; sha256="06xgnsccd621ihlrdmnnh14vh83q1r2bnp3iqi7vp5553b3y4l3w"; depends=[copula mvtnorm]; }; COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; }; COVID19 = derive2 { name="COVID19"; version="3.0.2"; sha256="0ljhvip944gv44b5nswcp59n0qjsyniynq2wiwcb03lv6pvvmz1x"; depends=[data_table R_utils]; }; @@ -714,8 +716,8 @@ in with self; { CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; CPAT = derive2 { name="CPAT"; version="0.1.0"; sha256="0zygncwww3cazwmx06bhzq0g41xcqfpw307azdhygc8jmcy6qj71"; depends=[purrr Rcpp RcppArmadillo Rdpack]; }; CPBayes = derive2 { name="CPBayes"; version="1.1.0"; sha256="1kw0r8spqm0s7cb3w5gplw67mhfmcbbf3ligngbary77ghkzirnb"; depends=[forestplot MASS mvtnorm purrr]; }; - CPC = derive2 { name="CPC"; version="2.2.1"; sha256="0nb5ghcrzjncqwpk0x7k4l4mkhrra46dqbbk5clpld56r7j4cn0b"; depends=[cluster dbscan Rfast]; }; - CPGLIB = derive2 { name="CPGLIB"; version="1.1.0"; sha256="01klcg6ik7f9p2cy8m0j8qrmy4rah49pv2fyhqvqfbcxibmjbgxy"; depends=[Rcpp RcppArmadillo]; }; + CPC = derive2 { name="CPC"; version="2.3.0"; sha256="1lh6g2d2xk41nnafcx2qvcigb957ccwq19vp1fcmxq8gmzcg3yr4"; depends=[cluster dbscan Rfast]; }; + CPGLIB = derive2 { name="CPGLIB"; version="1.1.1"; sha256="10pv9f36cg4ahgcbl3agc6zvgh3bmv78rc2vl6xhm1jpijhxqk93"; depends=[Rcpp RcppArmadillo]; }; CPMCGLM = derive2 { name="CPMCGLM"; version="1.2"; sha256="07hx2ik5zg05w1h6i94398mp54q958phws9ydgp6syjqlp9dpf1p"; depends=[abind mvtnorm plyr]; }; CPNCoverageAnalysis = derive2 { name="CPNCoverageAnalysis"; version="1.1.0"; sha256="0w4yw6d41sgl1ypcmp3bxgz4p3cpnbqx73id17zklid4avr3y9yi"; depends=[]; }; CPP = derive2 { name="CPP"; version="0.1.0"; sha256="1kdf43pnavjbmxkvrj78fiwl0ykln9x9ck8pcivhj9q5rsfbhbh4"; depends=[ineq kappalab mc2d]; }; @@ -728,20 +730,21 @@ in with self; { CREDS = derive2 { name="CREDS"; version="0.1.0"; sha256="1llgxsmpk13gq75y2r3qiwwjcl87bknkryaw5dq0ndf17rj31mw8"; depends=[MASS]; }; CRF = derive2 { name="CRF"; version="0.4-3"; sha256="0jlcc1ffd2z7sz1szbi4vrp5rihmcp18bsw27x02ivi6l21nyivf"; depends=[Matrix]; }; CRM = derive2 { name="CRM"; version="1.2.4"; sha256="0jv2z1y3zyj1m86p4pmqww58hj8pvid1ss6ym67y46n9srzxsmj5"; depends=[]; }; + CRMetrics = derive2 { name="CRMetrics"; version="0.2.2"; sha256="0q0d0g1iblwgm21kdrcj06ish9aif223rj9ykh0j9lvafgigc77f"; depends=[cowplot dplyr ggbeeswarm ggplot2 ggpmisc ggpubr ggrepel magrittr Matrix R6 scales sccore sparseMatrixStats tibble tidyr]; }; CRTConjoint = derive2 { name="CRTConjoint"; version="0.1.0"; sha256="1lp3rxjd8pilin6kvl49vm11bjd6dzhalmwf99j3jsiiavxc6baq"; depends=[doSNOW foreach Rcpp snow]; }; CRTSize = derive2 { name="CRTSize"; version="1.1"; sha256="1hwvfzbicz8p452k3qyschpn7q8drnhbln6ny6nx4ncgrdr8lsd0"; depends=[]; }; CRTgeeDR = derive2 { name="CRTgeeDR"; version="2.0.1"; sha256="0sqsgs8qbc6gvzr3l2r8y83nbhz12q3jf2cjlb2xgif15r7sbnxx"; depends=[ggplot2 MASS Matrix]; }; CRWRM = derive2 { name="CRWRM"; version="0.0.1"; sha256="0w6lg5q2c0w5p9vg5qr32pycyl8d1zp0s55jlvf2xhmqx34677hd"; depends=[]; }; CSCDRNA = derive2 { name="CSCDRNA"; version="1.0.3"; sha256="0ym6bzk8n9kf0pvd3h4dv2hhxmmrr54hvs7vccmxrhxikr8ix5iy"; depends=[Biobase BisqueRNA limSolve MAST nlshrink plyr Seurat]; }; - CSCNet = derive2 { name="CSCNet"; version="0.1.1"; sha256="02kv2d0xjmkmzzys04r8jczc51kdrm77rk48q6j3cl73zpcv3z99"; depends=[caret dplyr furrr future glmnet magrittr prodlim purrr recipes riskRegression stringr survival tibble tidyverse]; }; + CSCNet = derive2 { name="CSCNet"; version="0.1.2"; sha256="0amsrjzpfga66mh6x589whz70xpl0sg10f80x87apxz312rb4r8m"; depends=[caret dplyr furrr future glmnet magrittr prodlim purrr recipes riskRegression stringr survival tibble tidyverse]; }; CSESA = derive2 { name="CSESA"; version="1.2.0"; sha256="0pv6iabq1w22qbhlsbckdvva4n7igpzrjnrahmq83a6wxgvjbf5j"; depends=[Biostrings]; }; CSFA = derive2 { name="CSFA"; version="1.2.0"; sha256="1nkyhk8qhrrlx8v26yw86l954m4xfcxma4pqbhgw95jvqql5h3li"; depends=[elasticnet fabia FactoMineR pls randomcoloR snowFT]; }; CSGo = derive2 { name="CSGo"; version="0.6.7"; sha256="19awbblkx0g58gvd43xs1dmcsn588k185njw3fri8xxbn26xp5jy"; depends=[dplyr extrafont furrr future fuzzyjoin ggplot2 httr jsonlite magrittr purrr stringr]; }; - CSHShydRology = derive2 { name="CSHShydRology"; version="1.2.10"; sha256="1h3lcixsq19si1lbzzm8h9h0k4p01z2s8zzdw5az4vlsbg7wv1gl"; depends=[dplyr fields ggplot2 ggspatial httr Kendall lubridate magrittr plotrix raster sf stringr tidyhydat timeDate whitebox]; }; + CSHShydRology = derive2 { name="CSHShydRology"; version="1.3.0"; sha256="0jmc0d3lpnjf0srh3s3zy2d941xah4y7sq1zkw21a6gmxd82a3ww"; depends=[circular dplyr fields ggplot2 ggspatial httr Kendall lubridate magrittr plotrix raster sf stringr tidyhydat timeDate whitebox]; }; CSIndicators = derive2 { name="CSIndicators"; version="0.0.2"; sha256="12kbc289a3q1zjg19wcwng29hrjy76jmj3fd8c9064lj0xns5jjh"; depends=[ClimProjDiags multiApply s2dv]; }; CSMES = derive2 { name="CSMES"; version="1.0.0"; sha256="1ddr2b39d7nwan6dqf5xx9h6gzfxxk50r1d9vbpb9hc8a7d15vnp"; depends=[caTools data_table mco ROCR rpart zoo]; }; CSTE = derive2 { name="CSTE"; version="2.0.0"; sha256="0r38pvd83aw9zrq43malw50vlbnknh3b53x3ydj0wxrk95wsmy46"; depends=[dfoptim fda locpol Rcpp survival]; }; - CSTools = derive2 { name="CSTools"; version="4.1.0"; sha256="0r7bbaaapk5f32b6qwmmanddk1gqs7vq6461vf29pi7qsr2jlq9y"; depends=[abind ClimProjDiags data_table easyVerification ggplot2 maps multiApply ncdf4 plyr qmap rainfarmr RColorBrewer reshape2 s2dv verification]; }; + CSTools = derive2 { name="CSTools"; version="4.1.1"; sha256="1a05wv9isrlf7pzhychczvnpvsppnnriaz4jsm78ccg0m9y3wabj"; depends=[abind ClimProjDiags data_table easyVerification ggplot2 maps multiApply ncdf4 plyr qmap rainfarmr RColorBrewer reshape2 s2dv verification]; }; CSclone = derive2 { name="CSclone"; version="1.0"; sha256="0lqsqsgh2sf44fr1r7g179556v294yr1wy7x4320g7adxshrwyh5"; depends=[DNAcopy lpSolve mcclust moments]; }; CSeqpat = derive2 { name="CSeqpat"; version="0.1.2"; sha256="1nqk873cagpn4fba4rmyzb6hni1p5lqcvsr9givrcm0gfx756w1h"; depends=[NLP tm]; }; CTAShiny = derive2 { name="CTAShiny"; version="0.1.0"; sha256="18qw8nx1r4gwlxj9zxn4hllpn29fv3i4fgwyl5fh3qsv9hmbvi0x"; depends=[epitools rpivotTable shiny shinyMatrix]; }; @@ -762,7 +765,7 @@ in with self; { CVR = derive2 { name="CVR"; version="0.1.1"; sha256="1y8m9r409jq5h6xx1rvz7c7aj882jldfxly89zf3cvp2qg3jh7rj"; depends=[PMA Rcpp RcppArmadillo]; }; CVST = derive2 { name="CVST"; version="0.2-3"; sha256="0bgk0d6w3dyhb5s30idnp6jpb3m8wf3b79wqlg127wwm0cird8pg"; depends=[kernlab Matrix]; }; CVThresh = derive2 { name="CVThresh"; version="1.1.2"; sha256="14fgm5kzp1sscklv2pra800p12ga2hlqmm8s6zs5hdhlyvf0kj6v"; depends=[EbayesThresh wavethresh]; }; - CVXR = derive2 { name="CVXR"; version="1.0-10"; sha256="0cklfwsr3p4x4w7n6y3h3m4i3si8q0pwyp2vzv7kzawrmqc80484"; depends=[bit64 ECOSolveR gmp Matrix osqp R6 Rcpp RcppEigen Rmpfr scs]; }; + CVXR = derive2 { name="CVXR"; version="1.0-11"; sha256="0alp1g4bszxqcrjbn54bz1zswg8y10372fwwlbi0jjazycw9cap9"; depends=[bit64 ECOSolveR gmp Matrix osqp R6 Rcpp RcppEigen Rmpfr scs]; }; CVglasso = derive2 { name="CVglasso"; version="1.0"; sha256="1bh09cd0yabhqv5yfahhvayx3f09yqapzl1yr9nc9xqwyx1d0cfd"; depends=[doParallel dplyr foreach ggplot2 glasso]; }; CVrisk = derive2 { name="CVrisk"; version="1.1.0"; sha256="0xnpnjncdal2akdnkb52s7r82p2di0rc48h6nswbclkl5xf3snd6"; depends=[]; }; CaDENCE = derive2 { name="CaDENCE"; version="1.2.5"; sha256="1z3p5y1l67r470x6wrhnyjvw1ndppcm08fpj99x122j7kn6byff2"; depends=[pso]; }; @@ -780,8 +783,8 @@ in with self; { Canopy = derive2 { name="Canopy"; version="1.3.0"; sha256="0979hpphzhf4v71jx0shh3l8nffmpsn9l6f8ip2wxzcyx571i1wd"; depends=[ape fields pheatmap scatterplot3d]; }; CarletonStats = derive2 { name="CarletonStats"; version="2.0"; sha256="0pgzvw6gf8kjv8ndprwp4wlgdgh5sb75ga8z5syfw57fb05v7ac3"; depends=[]; }; Carlson = derive2 { name="Carlson"; version="1.1.0"; sha256="1ygsv2zdlm4yg35lqryb6hdn6wjm5yf1wdqbpd3vzmcag9m29nzq"; depends=[]; }; - Cascade = derive2 { name="Cascade"; version="2.0"; sha256="0zd9krlklmsy03kya5bdx2hj25fvfhwcx431q618ccw44c11b590"; depends=[abind animation cluster igraph lars lattice limma magic nnls survival tnet VGAM]; }; - CascadeData = derive2 { name="CascadeData"; version="1.3"; sha256="0vmr9gfmgrgan9q5hsavqfdd76dpm19a53m9s8jkj14rsd47bpll"; depends=[]; }; + Cascade = derive2 { name="Cascade"; version="2.1"; sha256="1hfbv9129rnrjqspjd8wnhw0qrp1m142bixlwddzr6j2sg7r8s20"; depends=[abind animation cluster igraph lars lattice limma magic nnls survival tnet VGAM]; }; + CascadeData = derive2 { name="CascadeData"; version="1.4"; sha256="0cbnp8mqv3alsz7b5fa8djg1yd46zkn1f3b0pqww2yn8zavd4fih"; depends=[]; }; CatDataAnalysis = derive2 { name="CatDataAnalysis"; version="0.1-5"; sha256="19bbilvz9h2bswpm5992c48cm4slc73kf0ny2mp78vhcfadri9cb"; depends=[]; }; CatDyn = derive2 { name="CatDyn"; version="1.1-1"; sha256="0gkaxs7apqhq7mp3chjsyhrnk3qkk11f8p7smmyj6h73888ry8jn"; depends=[BB optimx]; }; CatEncoders = derive2 { name="CatEncoders"; version="0.1.1"; sha256="1q9wzq06lac8z9y8b65alsxpb48bw8wqmifd893kknk51xq6r9kl"; depends=[data_table Matrix]; }; @@ -792,10 +795,10 @@ in with self; { CausCor = derive2 { name="CausCor"; version="0.1.2"; sha256="1m41i4knqh4hddz3s3p62qhx2dmdypm8gfdwlczlja89llx9737b"; depends=[cowplot dplyr ggplot2 magrittr WriteXLS]; }; CausalGAM = derive2 { name="CausalGAM"; version="0.1-4"; sha256="1riz11hfg96iks7734rg692l75nfrd3hmr9gw563j27rkk1nfkl6"; depends=[gam]; }; CausalGPS = derive2 { name="CausalGPS"; version="0.2.8"; sha256="1frzxmnqfskvlpxy7byy96i1yw88h9vjxc54fhn523d4676k6bmj"; depends=[data_table earth gam ggplot2 gnm KernSmooth logger MASS polycor ranger Rcpp rlang SuperLearner tidyr wCorr xgboost]; }; - CausalImpact = derive2 { name="CausalImpact"; version="1.2.7"; sha256="1sbi58zs39cxyq4h8d9h9w2s2qbnj5jkpc68cibwxlzkyllaks52"; depends=[assertthat Boom bsts dplyr ggplot2 zoo]; }; + CausalImpact = derive2 { name="CausalImpact"; version="1.3.0"; sha256="0h3sh35962vdph72svfdvk6b1gl7wnj2kfkkpcjldbiszlfxp7wx"; depends=[assertthat Boom bsts ggplot2 zoo]; }; CausalKinetiX = derive2 { name="CausalKinetiX"; version="0.2.1"; sha256="0haxw4vvbw48hlvsl1d1y3xm48qm5vl0d3k5lj89ajwc618nk5jg"; depends=[cvTools deSolve fda glmnet pspline quadprog randomForest sundialr]; }; CausalMBSTS = derive2 { name="CausalMBSTS"; version="0.1.1"; sha256="1mjw2zyddkci6vkbyz3d94l5z1aj3rc2w6lag5igbfv4q0n5qcrp"; depends=[CholWishart forecast KFAS MASS Matrix MixMatrix]; }; - CausalModels = derive2 { name="CausalModels"; version="0.1.0"; sha256="0njvszf6b161lq8g94aawwb9pwbf0gdb2by8g8n6s67vbl7lyq0w"; depends=[boot causaldata multcomp]; }; + CausalModels = derive2 { name="CausalModels"; version="0.2.0"; sha256="19m1qfzssrwmsxiiyqiqby102qmxxcmbyxhggd9bb44z2iicf8cl"; depends=[boot causaldata geepack multcomp]; }; CausalQueries = derive2 { name="CausalQueries"; version="0.1.0"; sha256="1m7i5v4im85lzn9agf9nlf458y76k21h59avg4924bm4hn709lls"; depends=[BH dagitty dirmult dplyr ggdag ggplot2 latex2exp lifecycle Rcpp RcppEigen repr rlang rstan rstantools StanHeaders stringr]; }; CautiousLearning = derive2 { name="CautiousLearning"; version="1.0.1"; sha256="1m5x93l4bscrpcxk0pva6d6n2qnzhzxh0a6a81p97l8lqgs1qw2q"; depends=[BH Rcpp sitmo spc]; }; CePa = derive2 { name="CePa"; version="0.8.0"; sha256="1wjm6nyjaz3z0g2dxk1k82va86qxx2xsgx02y9ipyzf1ldxclm1s"; depends=[graph igraph Rgraphviz]; }; @@ -809,14 +812,14 @@ in with self; { ChainLadder = derive2 { name="ChainLadder"; version="0.2.16"; sha256="04ch0aimxc81i1isv6clpwx0bsbrpq5ncjww9dapa4v5rgxc4n2q"; depends=[actuar cplm ggplot2 lattice MASS Matrix statmod systemfit tweedie]; }; ChangePointTaylor = derive2 { name="ChangePointTaylor"; version="0.2"; sha256="0rf3h7l8l6fw2i489ldcqhsf9ppjzpx298p5ciyp9iyc0zcykz38"; depends=[bench dplyr ggplot2 magrittr purrr Rcpp rlang tidyr]; }; ChangepointTesting = derive2 { name="ChangepointTesting"; version="1.1"; sha256="0gasqf39hhrd2pg2rq4a2aaxwi3syjvmgdiss42wdwb47dww8wil"; depends=[]; }; - ChannelAttribution = derive2 { name="ChannelAttribution"; version="2.0.5"; sha256="09qdj93al6r7pg9s2xvwks7d73bgjsn1k7h8rcdzf245r89l8726"; depends=[Rcpp RcppArmadillo]; }; + ChannelAttribution = derive2 { name="ChannelAttribution"; version="2.0.6"; sha256="174mv7b9jfw240i29b457994iza3wwqx0mjxbpl28af0fba1h4xl"; depends=[Rcpp RcppArmadillo]; }; ChannelAttributionApp = derive2 { name="ChannelAttributionApp"; version="1.3"; sha256="0n9g8wwvc8p5clypl7z23w8fs6d0c47bblijwd4pjwy26bcb4m8h"; depends=[ChannelAttribution data_table ggplot2 shiny]; }; Chaos01 = derive2 { name="Chaos01"; version="1.2.1"; sha256="1wk70l1y0yzbjcjp0r334l1q3hzki0vzn6wbza97mq9pz8wp050r"; depends=[]; }; - ChaosGame = derive2 { name="ChaosGame"; version="1.3"; sha256="0xayap1gs36p9cvlyf5s562vy5pahqcwlwnr355i34zw616yg76l"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl]; }; + ChaosGame = derive2 { name="ChaosGame"; version="1.4"; sha256="06d2jm8b3l242yqgbfsr1cclph0l8xdxqfq7xvbghsavzk3lf367"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl]; }; CheckDigit = derive2 { name="CheckDigit"; version="1.0.0"; sha256="19apm7hr1k693w2ybv7vmaw5mxnhdjggpnr4m8phyvv8by345rxs"; depends=[]; }; ChemoSpec = derive2 { name="ChemoSpec"; version="6.1.4"; sha256="0dnpwfx1p3p8qfxxiz1r6hipdpklhyz88sd2mq2ap24pn7xqdhf1"; depends=[ChemoSpecUtils ggplot2 magrittr patchwork plotly plyr readJDX reshape2]; }; ChemoSpec2D = derive2 { name="ChemoSpec2D"; version="0.5.0"; sha256="05k46fn2i0ipn14zignxvykr8018wxql26x2r5b479hbkg1rk5s4"; depends=[ChemoSpecUtils colorspace ggplot2 readJDX]; }; - ChemoSpecUtils = derive2 { name="ChemoSpecUtils"; version="1.0.0"; sha256="15w9v4g7myw0ygd9dvalz900yzgz5j2jnmw4j3zfp04fgm3wgbfq"; depends=[ggplot2 ggrepel magrittr plotly plyr]; }; + ChemoSpecUtils = derive2 { name="ChemoSpecUtils"; version="1.0.2"; sha256="0px9aqkkpkhcnjjan22cr43d1qrgrkb2fgdam5cpmv1cfygckwvj"; depends=[data_table ggplot2 ggrepel magrittr plotly]; }; ChillModels = derive2 { name="ChillModels"; version="1.0.2"; sha256="06hgg893anh5z8an4l1xl4liz7d0m79n21h116vkdlymayccydbr"; depends=[]; }; ChineseNames = derive2 { name="ChineseNames"; version="1.1.1"; sha256="1vkf4573iq7fqxwig7sphsbfpa9jbx36dayywdjx3n8nx8lksdqa"; depends=[bruceR data_table]; }; ChoR = derive2 { name="ChoR"; version="0.0-4"; sha256="08mildsx542zfm0kcdakcv7c71hb4jgbcq1lhidf0fz76zj1pzk1"; depends=[commonsMath rJava]; }; @@ -844,17 +847,17 @@ in with self; { ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; ClimInd = derive2 { name="ClimInd"; version="0.1-3"; sha256="0n5kd001nkpks16c3msvn2qvzyrjawa2rqwh8zph2qr5hgpwcpg7"; depends=[chron SPEI weathermetrics]; }; ClimMobTools = derive2 { name="ClimMobTools"; version="0.5"; sha256="14ysx7q92hgmkrwgnkdb3h38jz1zjsadzm8zwma63hhrrcmig2j1"; depends=[httr jsonlite Matrix RSpectra]; }; - ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.1.3"; sha256="1grhg0ajf5lfm7pi5mm0hgp0cmln1jwrgkrfb4ci85fpqn96ddji"; depends=[climdex_pcic multiApply PCICt plyr]; }; + ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.2.1"; sha256="1xb2vhv6haql1xqx9ic9hikshfi47lxv874mfwv1jll4fq95saia"; depends=[climdex_pcic multiApply PCICt plyr]; }; ClinSigMeasures = derive2 { name="ClinSigMeasures"; version="1.0"; sha256="0fw89a1q92ck32z6w4zn1ldvky6ag1gi7b9bbv10mhmqhq4w3k58"; depends=[]; }; ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="1.1.1"; sha256="0b5by4sn9yvrvxr9921yqsgp8ma3g1hi2qbp5j9m836db1zjhyla"; depends=[Rcpp]; }; ClinicalUtilityRecal = derive2 { name="ClinicalUtilityRecal"; version="0.1.0"; sha256="17xj9cmdkjrzx7mshka2hlkxh8887sprdqix7fd8jcr9bmc6ad9r"; depends=[caret cowplot ggplot2 lattice nloptr]; }; - CliquePercolation = derive2 { name="CliquePercolation"; version="0.3.0"; sha256="0wd8pbi0p19vyhnf6yjwhfzc4s95hhpp26hy97jwx9bg8ahcd4hj"; depends=[colorspace igraph magrittr Matrix pbapply Polychrome qgraph]; }; + CliquePercolation = derive2 { name="CliquePercolation"; version="0.4.0"; sha256="17m8pj8wg2ngzip1ag3jm5fqi083ilrsi0rvpcg5jmqflwlka8h3"; depends=[colorspace igraph lessR magrittr Matrix ohenery pbapply Polychrome qgraph]; }; CloneSeeker = derive2 { name="CloneSeeker"; version="1.0.11"; sha256="19aj4c2q3wp4vp08j72700wwyqmkqxwml2fwmz0wsxdam8vp1ydi"; depends=[combinat mc2d quantmod]; }; CluMP = derive2 { name="CluMP"; version="0.8.1"; sha256="1vpxl2rcknqx32b94b48iirkh7r7cdri9mcljrw29gsbvhrfc46k"; depends=[amap data_table dplyr ggplot2 MASS NbClust rlang tableone]; }; ClueR = derive2 { name="ClueR"; version="1.4"; sha256="0awl3ag48idg0396hcgqrh5f16mbgximr5xbxjiimib5zysdc558"; depends=[e1071]; }; ClusBoot = derive2 { name="ClusBoot"; version="1.0"; sha256="1wh9mv932zarl8w098lgv2jpanp6r8nzdkyayv8nxk7nddl0bn1k"; depends=[]; }; ClusPred = derive2 { name="ClusPred"; version="1.1.0"; sha256="12pm5vkfxpaincv9ajid0p07l0mjc2kfqqfg0ls2pcxmmkh8wwb4"; depends=[ald ALDqr quantreg Rcpp RcppArmadillo VGAM]; }; - ClusROC = derive2 { name="ClusROC"; version="1.0.1"; sha256="0nndzm5ap5fmvgc74kcx1h3jv4wpjg9rr4vj1lvxz8zyw3kacfrh"; depends=[car doSNOW foreach ggplot2 ggpubr nlme numDeriv rgl snow]; }; + ClusROC = derive2 { name="ClusROC"; version="1.0.2"; sha256="055ppcnzwkapnyf9xvld4bvkccwf494gqcb2qq0vnsa8n6bz5k46"; depends=[doParallel ellipse foreach ggplot2 ggpubr iterators nlme numDeriv Rcpp RcppArmadillo rgl]; }; ClusTorus = derive2 { name="ClusTorus"; version="0.2.2"; sha256="052jq96xr9qrc203ib11qsni50j0jzdpfwmbnd5rypfvff6w5kxc"; depends=[BAMBI cowplot ggplot2 igraph purrr rlang]; }; ClusVis = derive2 { name="ClusVis"; version="1.2.0"; sha256="06yckdl3gxjia1gjjqpc29lvy4f7qf47fncslng9ggjnks6il145"; depends=[MASS mgcv mvtnorm Rcpp RcppArmadillo Rmixmod VarSelLCM]; }; ClussCluster = derive2 { name="ClussCluster"; version="0.1.0"; sha256="1436849m2mnm8j7lf653zv8lcvvg2ch8kkks4bvr39kx21wxy8ss"; depends=[ggplot2 reshape2 rlang scales VennDiagram]; }; @@ -867,7 +870,7 @@ in with self; { ClustVarLV = derive2 { name="ClustVarLV"; version="2.1.1"; sha256="0maylgf6czlll5zn3xj68acmllxi4x2r4ri6bdx8vl9apzax1rgy"; depends=[doParallel foreach iterators plyr Rcpp RcppEigen]; }; Cluster_OBeu = derive2 { name="Cluster.OBeu"; version="1.2.3"; sha256="10i7mnaq968my1c5hi8bdsj05m64wlmrf4n4m118is5h1q7zss8r"; depends=[car cluster clValid data_tree dendextend jsonlite mclust RCurl reshape reshape2 stringr]; }; ClusterBootstrap = derive2 { name="ClusterBootstrap"; version="1.1.2"; sha256="1ha50yzc2arlz4c2g7r9w891fk775xfbhz0gky3zxawlsa02213s"; depends=[dplyr magrittr]; }; - ClusterR = derive2 { name="ClusterR"; version="1.2.7"; sha256="1sl218scrf5s02v54bmmk2sz1vrnlq16c14c0lcg1n7x8d76sgk6"; depends=[ggplot2 gmp gtools lifecycle Rcpp RcppArmadillo]; }; + ClusterR = derive2 { name="ClusterR"; version="1.2.8"; sha256="04p0bjqi18b6qvvximad5yf5v5zalhjbl9j3m405g942kp0a48xh"; depends=[ggplot2 gmp gtools lifecycle Rcpp RcppArmadillo]; }; ClusterRankTest = derive2 { name="ClusterRankTest"; version="1.0"; sha256="01gzalhibqcdx3a6yc2cm1v77rscva73v5m5m0qkrgqdp9c8ph2a"; depends=[]; }; ClusterStability = derive2 { name="ClusterStability"; version="1.0.3"; sha256="1laa5m3y1rc7jr8q3i9qb3izs7qmadz169w9xm8q3mm3834ngn9b"; depends=[cluster clusterCrit copula Rcpp WeightedCluster]; }; ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; }; @@ -880,7 +883,7 @@ in with self; { CoOL = derive2 { name="CoOL"; version="1.1.2"; sha256="18z7s8bvnym4xj0hh5m6bwm86ddmsgivqv4g5zbd9m87l7khl9pn"; depends=[ClustGeo data_table ggplot2 mltools plyr pROC Rcpp RcppArmadillo wesanderson]; }; CoRpower = derive2 { name="CoRpower"; version="1.0.4"; sha256="08chsbbl74rskinp68pwzpvnxx5lkfqf71j7ryp1cwy7199h3jyw"; depends=[osDesign survival]; }; CoSMoS = derive2 { name="CoSMoS"; version="2.1.0"; sha256="149mybfxaqssawp8fqhjiv3xljzflc02y4pfvavz7rklfplidqkb"; depends=[animation cowplot data_table directlabels ggplot2 ggquiver mAr Matrix matrixcalc MBA mvtnorm nloptr plot3D pracma]; }; - CoTiMA = derive2 { name="CoTiMA"; version="0.5.4"; sha256="02bg0bckg5h8bk4plxjni5kya9rmqhz5d9dvfa19hmyd384hdxhv"; depends=[abind crayon ctsem doParallel foreach lavaan MASS MBESS OpenMx openxlsx psych rootSolve RPushbullet scholar stringi zcurve]; }; + CoTiMA = derive2 { name="CoTiMA"; version="0.6.2"; sha256="0394a6m1hg9klcgpk4s51rql8k2084cbs6bzpgrsbk3gnvcxy8s3"; depends=[abind crayon ctsem doParallel foreach lavaan MASS MBESS OpenMx openxlsx psych rootSolve RPushbullet scholar stringi zcurve]; }; CodataGS = derive2 { name="CodataGS"; version="1.43"; sha256="1bjn6s1f5jn64gwrvjz5kvwfkbqrqhavib6dj9k37rb5nzqkwhp6"; depends=[Matrix]; }; CodeDepends = derive2 { name="CodeDepends"; version="0.6.5"; sha256="0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq"; depends=[codetools graph XML]; }; CohensdpLibrary = derive2 { name="CohensdpLibrary"; version="0.5.8"; sha256="1kvg5wgzgscwqm9hbng92alka2jrar7yfx3s707gj11ck5ldhhmf"; depends=[Rdpack]; }; @@ -905,12 +908,11 @@ in with self; { Compack = derive2 { name="Compack"; version="0.1.0"; sha256="1bl1drbkak7r7scfiij6sf8fjzq01y3p05mjlkknhi9k1l6jq0mi"; depends=[fda MASS orthogonalsplinebasis plyr Rcpp RcppArmadillo]; }; CompareCausalNetworks = derive2 { name="CompareCausalNetworks"; version="0.2.6.2"; sha256="0r8gdr834jqqwiq9h4yz19gcg92rbdd4fr3fwi083vfjml82f0v0"; depends=[data_table expm Matrix]; }; CompareTests = derive2 { name="CompareTests"; version="1.2"; sha256="1z96kh851bpr2szgyjszkpv6m5ma6abz7hrm50fgvfpgxkj7f4yi"; depends=[]; }; - ComparisonCR = derive2 { name="ComparisonCR"; version="1.0.4"; sha256="10xw3ppkzpc3njc409ln7g6bg33csf2ilw3f11hn60ry5xbnn82y"; depends=[boot CIFsmry cmprsk]; }; ComparisonSurv = derive2 { name="ComparisonSurv"; version="1.1.1"; sha256="0lidakxb1ab6bpb7sf2arjl1xpym1lzxbh63g0x4c2dm7h0kzkwi"; depends=[muhaz survival survRM2 TSHRC]; }; Compind = derive2 { name="Compind"; version="2.6"; sha256="17gqjqpnq7925gx9p2q068zcrdjkkjjmm9zgn2rmpmgzsp7ww3j6"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff np psych smaa spdep]; }; ComplexUpset = derive2 { name="ComplexUpset"; version="1.3.3"; sha256="1sk4v5kc2wkgfaws0hjlp30mngm907r5gz1iglf68j46lfs9jbsv"; depends=[colorspace ggplot2 patchwork scales]; }; - Compositional = derive2 { name="Compositional"; version="5.9"; sha256="1w5ybdsbshlxd82zks2jiwbc2jnn5fjcj0pmdffq6n0z36myxgzd"; depends=[codalm Directional doParallel emplik energy FlexDir foreach glmnet MASS mda mixture NlcOptim nnet pchc RANN Rfast Rfast2 sn]; }; - CompoundEvents = derive2 { name="CompoundEvents"; version="0.1.0"; sha256="03shw3016xc41a6by8pnpqs7mmnhs0qmg5aqd4hlfcy3dv2w9wkf"; depends=[]; }; + Compositional = derive2 { name="Compositional"; version="6.0"; sha256="0f17yj4zr69g70kayp0r25j6z2nqmhh06byp4vks8xiphah3jx4w"; depends=[codalm Directional doParallel emplik energy FlexDir foreach glmnet MASS mda mixture NlcOptim nnet pchc RANN Rfast Rfast2 sn]; }; + CompoundEvents = derive2 { name="CompoundEvents"; version="0.2.0"; sha256="0dlkkr26f07g0q3kcg0byvvlnf2hd5i8h9p1mkba333wh6af21ic"; depends=[]; }; ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6.1"; sha256="1ziy646lbx297kia797xjxa8hyl826x1hiighyjslvnlvrhapx08"; depends=[Rcpp]; }; ConNEcT = derive2 { name="ConNEcT"; version="0.7.27"; sha256="1j66qmvgm9yrgnrcg600s25haq9imcshmy6fv9vd84mhy21md85h"; depends=[qgraph]; }; ConR = derive2 { name="ConR"; version="1.3.0"; sha256="1q93x2b7a2jgkybazk24x8gvwvjjvkhi1gy5zx1sc2f4arm73myq"; depends=[doSNOW fields foreach geosphere raster rgdal rgeos rnaturalearth sf snow sp tibble writexl]; }; @@ -950,7 +952,7 @@ in with self; { CopulaCenR = derive2 { name="CopulaCenR"; version="1.2.1"; sha256="0dkjdzd720wnmfashvg3q0hl0dw9w99m972jwrjrzh24498rlq1m"; depends=[caret copula corpcor flexsurv icenReg magrittr plotly pracma survival]; }; CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.5.1"; sha256="027007xrzd2m7pgv8ki901aaf2957ih1lqh881viyd8hbfcfaghy"; depends=[matlab mc2d statmod tensor]; }; CorBin = derive2 { name="CorBin"; version="1.0.0"; sha256="0mjvhj9cw21xjg96fz5bcyfxgwdw367l1942a38by77ylypdfq3y"; depends=[]; }; - CorMID = derive2 { name="CorMID"; version="0.1.6"; sha256="0grwaaj06clg27lssa9zhlv2siyrraxjc4sy5nj6mffncs10d52c"; depends=[plyr Rdisop]; }; + CorMID = derive2 { name="CorMID"; version="0.1.7"; sha256="1i51zn8m2lpdv3dqq4cqyvyzqv9wf1flw7g83j8dj8r6nlasfva5"; depends=[plyr Rdisop]; }; Corbi = derive2 { name="Corbi"; version="0.6-2"; sha256="13lbh6fcfrpgz459mjdnfkd8kys2350s8j0vv9ps18092264gh42"; depends=[CRF igraph MASS Matrix]; }; CornerstoneR = derive2 { name="CornerstoneR"; version="2.0.2"; sha256="04dvryhcyi7f6bmm4067cn5vmy7kdqi3bys7ln8nnsc0kkdjxhi5"; depends=[checkmate data_table minpack_lm ranger SpatialTools vcd]; }; CorrBin = derive2 { name="CorrBin"; version="1.6"; sha256="0iwad5qf7hqii02s5f85155c5s7v8ghnac4l6l3c45dshrpapp2m"; depends=[boot combinat dirmult geepack mvtnorm]; }; @@ -962,7 +964,7 @@ in with self; { CosW = derive2 { name="CosW"; version="0.1"; sha256="12l4w8b5jnr8773hxk7khrdn705x6bdbw7s8z8w95bfbbi12dj6v"; depends=[fdrtool pracma]; }; Counterfactual = derive2 { name="Counterfactual"; version="1.2"; sha256="1spryxvnkdz728rl4nb7zlqhynnh0b4m7lnhq4i1n13gfsz1m5j4"; depends=[doParallel doRNG foreach Hmisc quantreg survival]; }; Counternull = derive2 { name="Counternull"; version="0.1.0"; sha256="1vnjhqif8ydnp6fb225hml1d2sincscs4q1vacbzxah628ac9yhp"; depends=[effsize]; }; - Countr = derive2 { name="Countr"; version="3.5.5"; sha256="0w2bdcr84zjcgcn2vrx2nib7dxq8vm12di3ni57z4yx4syskg3ik"; depends=[boot car dplyr flexsurv Formula lattice lmtest MASS Matrix numDeriv optimx pscl RColorBrewer Rcpp RcppArmadillo Rdpack standardize VGAM xtable]; }; + Countr = derive2 { name="Countr"; version="3.5.6"; sha256="0zmg0hy9h2rjj3a6h05q8xxg0q2q65agmpm0gxk0qjl97wrh1fcy"; depends=[boot car dplyr flexsurv Formula lattice lmtest MASS Matrix numDeriv optimx pscl RColorBrewer Rcpp RcppArmadillo Rdpack standardize VGAM xtable]; }; CountsEPPM = derive2 { name="CountsEPPM"; version="3.0"; sha256="0iw7sfrb4yyaagwm1f4q9av5zvzia1mp2ns287ppsw3k248lz0kb"; depends=[expm Formula lmtest numDeriv]; }; CovCombR = derive2 { name="CovCombR"; version="1.0"; sha256="07yd0zbvc9db2jw6xigfhxnbkxwb3gxlmywadz7fs3rva2if2ffx"; depends=[CholWishart Matrix nlme]; }; CovRegRF = derive2 { name="CovRegRF"; version="1.0.1"; sha256="0fldvdjxysg6r7p6vxnnfjih68j8igxva57fs5rygxmi51l2vl6n"; depends=[data_table data_tree DiagrammeR]; }; @@ -979,15 +981,15 @@ in with self; { Cprob = derive2 { name="Cprob"; version="1.4.1"; sha256="1m4ys8xpj1jbn3lf8fym935y94dxipiimsf9zxwyw5sy71y7skgq"; depends=[geepack lattice lgtdl prodlim tpr]; }; Cronbach = derive2 { name="Cronbach"; version="0.1"; sha256="1gkapi7pgf1mwidhgdf3y5cm4bz5igzb7mdflz560aa67asp1qyf"; depends=[boot]; }; CropDetectR = derive2 { name="CropDetectR"; version="0.0.1"; sha256="14sabqld94if7f2m39bh6652cb62hcwx53k8q5k23anzzsn93qlj"; depends=[dplyr EBImage imager reshape2]; }; - CropScapeR = derive2 { name="CropScapeR"; version="1.1.4"; sha256="0rs428sz2fd4ysz1k5i2zkjg4vga2rczlbdd042sdjq501nk2462"; depends=[data_table dplyr httr magrittr raster RJSONIO sf]; }; CrossVA = derive2 { name="CrossVA"; version="1.0.0"; sha256="16ahw8h27acvqqixmwmsyl6rbjzxbn4pfyh2ls9rq852mc7mdg9b"; depends=[stringi]; }; CrossValidate = derive2 { name="CrossValidate"; version="2.3.4"; sha256="1q5wnw2llvlw3hbjg0zccipk3ns31m2339x1aj6m526zhvgl2wvx"; depends=[Modeler oompaBase]; }; Crossover = derive2 { name="Crossover"; version="0.1-20"; sha256="1mm8zc845v077rnhijammpq72dsm9smwiixr0iygcadb5vbkfpib"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; + Crosstabs_Loglinear = derive2 { name="Crosstabs.Loglinear"; version="0.1.1"; sha256="0238652k1mv396wjxm058xvhp7rss0nkmn48bvkhq6pcryna2lzb"; depends=[]; }; CruzPlot = derive2 { name="CruzPlot"; version="1.4.8"; sha256="19dza13mdd67g7710bzzg1bi32nhgr3c5vcyh98igw3q8hfk7ac8"; depends=[dplyr DT geosphere mapdata maps marmap shiny shinydashboard shinyjs stringr swfscDAS]; }; CryptRndTest = derive2 { name="CryptRndTest"; version="1.2.7"; sha256="0skk0mgnkfknlbdidfh2jca1wa8rzgd29ypwpa8kdh83l9jhdi5g"; depends=[gmp kSamples LambertW Rmpfr sfsmisc tseries]; }; CrypticIBDcheck = derive2 { name="CrypticIBDcheck"; version="0.3-3"; sha256="1c7n020i9lxp0fam05k9v4az4rvx8fakhzi9fkma82smpl709x8q"; depends=[car chopsticks ellipse rJPSGCS]; }; CsChange = derive2 { name="CsChange"; version="0.1.6"; sha256="0ahgzir1rz5hh2jkgabp9vccg527vbvmkdyxf9lyz5yxkig3jv2s"; depends=[boot Hmisc rms survival]; }; - Cubist = derive2 { name="Cubist"; version="0.4.0"; sha256="0y2mjqg8285vprm42z1dsqhs5k6g3703ysg3225a7qq08ga787rs"; depends=[lattice reshape2]; }; + Cubist = derive2 { name="Cubist"; version="0.4.1"; sha256="0ab1zdc1ddc6x7j2y53ccvqwaap6v26i447hn8lwlnz6i7c3idlz"; depends=[lattice reshape2]; }; CustomerScoringMetrics = derive2 { name="CustomerScoringMetrics"; version="1.0.0"; sha256="166v0hbxy4xgbfqh7sx6zsrv4pghqpimx5xry3h2qwynnvr4ng1a"; depends=[]; }; CustosAscensor = derive2 { name="CustosAscensor"; version="0.1.0"; sha256="1axyhwf9rc9dvrrcrpmx69kp49nwb0an7csn9qbjmx9jwwav11l5"; depends=[]; }; CutpointsOEHR = derive2 { name="CutpointsOEHR"; version="0.1.2"; sha256="0r772zb7g10akcfnf2hnyvpvba4px9pgslyns7drmijdsh0ncnvj"; depends=[survival]; }; @@ -1012,6 +1014,7 @@ in with self; { DAP = derive2 { name="DAP"; version="1.0"; sha256="0zzb05yxfaqp6qnr979q20rqy8sl5l825mxs0x9366qr7mz5k5ws"; depends=[MASS]; }; DATAstudio = derive2 { name="DATAstudio"; version="1.1"; sha256="1gwm53pgab5qn0p46bxs0790n7bbfl7b66i84xsa6bb4zdw5jdzb"; depends=[data_table ggplot2 scales]; }; DArand = derive2 { name="DArand"; version="0.0.1.2"; sha256="1pwd5srrjy8mhs40k6g6x5j3vk9cr5hylk8sdyiiqalpq490nzqy"; depends=[]; }; + DBERlibR = derive2 { name="DBERlibR"; version="0.1.3"; sha256="19hqp0q7j6b7h9bamn3v2d1kdwzi0mlqvx7b618fkixpibqndzn7"; depends=[car dplyr emmeans ggplot2 ggpubr ggrepel psych readr reshape rstatix tibble]; }; DBEST = derive2 { name="DBEST"; version="1.8"; sha256="1a598g02hpfgv572gchllqkppynnsp4lx764jg0g66w3b66k0kdy"; depends=[zoo]; }; DBI = derive2 { name="DBI"; version="1.1.3"; sha256="13a2656w5j9shpcwa7gj2szy7nk9sajjhlisi5wdpgd57msk7frq"; depends=[]; }; DBIsqldf = derive2 { name="DBIsqldf"; version="0.9.9-2"; sha256="1yp9xqrf6dbq9478w0bd55rzhqf78anwrqzlkphbl7fk2d2ipy6i"; depends=[DBI]; }; @@ -1027,7 +1030,7 @@ in with self; { DCEtool = derive2 { name="DCEtool"; version="1.0.0"; sha256="0l6m0dpr83fi22sp8vwc7jxw598j91jhz55s51ihii0wfiwk26ym"; depends=[adjustedcranlogs bslib dfidx DT fastDummies ggplot2 htmltools idefix knitr magrittr matrixStats mlogit mvtnorm readxl remotes rlist rmarkdown shiny shinyBS shinycssloaders shinythemes shinyWidgets stringi survival tibble tidyr tidyverse writexl]; }; DCG = derive2 { name="DCG"; version="0.9.3"; sha256="08718x6v3g7kpfv0gpgm19cn3d3ynj7yagzs0jic1j5rwvn04pfb"; depends=[]; }; DCL = derive2 { name="DCL"; version="0.1.2"; sha256="0r9zigbxaa9w8501mishydyp47rpzfrx717m0ysly6nkxfm6g6d6"; depends=[lattice latticeExtra]; }; - DCLEAR = derive2 { name="DCLEAR"; version="1.0.8"; sha256="1riqsrzx9liq9fq9b4bfyfkixq879rzwa2yl202if8py42k1rnk5"; depends=[ape BiocGenerics BiocParallel dplyr igraph Matrix matrixStats phangorn purrr rBayesianOptimization Rcpp RcppArmadillo rlang stringr tidyr tidyverse]; }; + DCLEAR = derive2 { name="DCLEAR"; version="1.0.11"; sha256="0s56qyp9jrfkqf946w9hin2qfkmxcgg3ymcwj3v24gabvyqivjdm"; depends=[ape BiocGenerics BiocParallel dplyr igraph Matrix matrixStats phangorn purrr rBayesianOptimization Rcpp RcppArmadillo rlang stringr tensorflow tidyr tidyverse]; }; DCODE = derive2 { name="DCODE"; version="1.0"; sha256="19dwms88q0ylxd92l3ivig8p8jjyhk8mhgz0l36m9pcq11gyjc0n"; depends=[seqinr]; }; DCPO = derive2 { name="DCPO"; version="0.5.3"; sha256="1h14xnii6kv6sc7pfxalif3bj0mifnxg46x4lwbixx9vzxxz96sq"; depends=[beepr BH dplyr forcats janitor purrr Rcpp RcppEigen rstan rstantools StanHeaders tibble tidyr]; }; DCSmooth = derive2 { name="DCSmooth"; version="1.1.2"; sha256="19pkj8z9wm4g8kxz1j3jw2n0bwldsyakipxvqpwnmlg2g5j8f5b1"; depends=[doParallel foreach fracdiff plotly Rcpp RcppArmadillo]; }; @@ -1036,7 +1039,7 @@ in with self; { DCluster = derive2 { name="DCluster"; version="0.2-8"; sha256="1ixn81jn0vmfi3hyqs1lq3dhpw2f5xkvq8r34pj8x3n664z2h8q4"; depends=[boot MASS spdep]; }; DClusterm = derive2 { name="DClusterm"; version="1.0-1"; sha256="04i9fyph2k3ffds0nv49371p8lw6dkzcf27pc98f99x0l6c8k5iq"; depends=[DCluster lme4 sp spacetime xts]; }; DDD = derive2 { name="DDD"; version="5.0"; sha256="13kqgj45afd0c5jkwi36j94v7l2bz60i3583z1jcvdxq913wwv5b"; depends=[ape BH deSolve expm Matrix phytools Rcpp SparseM subplex]; }; - DDHFm = derive2 { name="DDHFm"; version="1.1.2"; sha256="0lgh6kcfas06p2yy7zy21r05k5521xbj5af3wwwssp5li1cia35g"; depends=[lokern wavethresh]; }; + DDHFm = derive2 { name="DDHFm"; version="1.1.3"; sha256="1xkjbhqipz6kqd6kw9682q5sbrvbpq4jn8nms3cv63b8x9nl1k55"; depends=[lokern wavethresh]; }; DDIwR = derive2 { name="DDIwR"; version="0.13"; sha256="0vczy1614k31s3skblzznpagwyf9qr3wdfrwvxdvck1c4albkmrp"; depends=[admisc declared haven readxl writexl xml2]; }; DDL = derive2 { name="DDL"; version="1.0.1"; sha256="176hvm3gl6dv9na3jjkqb27b8n4fwxsg8cazwkabv9jn12w4a93p"; depends=[glmnet Matrix]; }; DDM = derive2 { name="DDM"; version="1.0-0"; sha256="19g06qk3lzasj294x9wfij729mlq6ryvjqkn3rgl5xp1w0gx9wi2"; depends=[]; }; @@ -1047,12 +1050,13 @@ in with self; { DECIDE = derive2 { name="DECIDE"; version="1.3"; sha256="04hqr3r2ys6xni3a2mr2j45415wm3iix38xfxccrnx2wjk5w3b5b"; depends=[]; }; DEET = derive2 { name="DEET"; version="1.0.6"; sha256="0mx3v8bylckh808wdgbinnm9rl4jhgazfl8fh2xrlj4yxfwcsrd5"; depends=[ActivePathways downloader dplyr ggplot2 ggrepel glmnet pbapply]; }; DEEVD = derive2 { name="DEEVD"; version="1.2.3"; sha256="1wa3h0z5sk8zrwblzb8w7hgj9yqw56vqi3vsnpva53qynf42r2n7"; depends=[evd]; }; + DEGRE = derive2 { name="DEGRE"; version="0.2.0"; sha256="040hfpvqwl8r0iazwpnq7fmkydsxqc7mck7wbjqf6c19cw3zziz7"; depends=[car dplyr foreach ggplot2 ggpubr ggrepel glmmTMB parglm tibble]; }; DELTD = derive2 { name="DELTD"; version="2.6.8"; sha256="0s5qiy2cb6fcm9fnbzmqs2x39im5r1vb45avh9isc71f7xl3my36"; depends=[]; }; DEM = derive2 { name="DEM"; version="0.0.0.2"; sha256="17ibq5cavzkl2vfrmrkz77m28l4xpj97skad5pfvk1nhzyrg2k1l"; depends=[mvtnorm]; }; DEMOVA = derive2 { name="DEMOVA"; version="1.0"; sha256="09dqhhhihphhdnplmhdq4q5zwc0qvqhirdrxa9x6fr43vwa5zfp4"; depends=[leaps]; }; DEPONS2R = derive2 { name="DEPONS2R"; version="1.1.6"; sha256="1r37w7j46djpdcw1zw82c83r5ndqpdwham0g95qsqlhmvg709i9q"; depends=[jsonlite raster rgdal rgeos sp xml2]; }; DES = derive2 { name="DES"; version="1.0.0"; sha256="16p38i8ykwc8gjw6c9dhdwjjpa1b17n9wqhz3rhkbzjh978pky31"; depends=[]; }; - DEoptim = derive2 { name="DEoptim"; version="2.2-6"; sha256="1qg2d4d076a99qdjfg0yyq5z1xc1zlwydwry00nj2rx0hdykjqwc"; depends=[]; }; + DEoptim = derive2 { name="DEoptim"; version="2.2-8"; sha256="0k7mvf7j8y1sqv8zpiwkw4xcmgki37drkxjijrsmmhkfybfan7k3"; depends=[]; }; DEoptimR = derive2 { name="DEoptimR"; version="1.0-11"; sha256="0nqn12n5qlyk2zsgh57dvizy5z71xgqrhrcqj6lbzybm9c7v6x0q"; depends=[]; }; DFA = derive2 { name="DFA"; version="0.9.0"; sha256="0nk8k6xxqbbk1zhq3xsm59azvkj9499vp92pjl9xygasarim90rl"; depends=[]; }; DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.2.5"; sha256="0c0590dzfvpmpjbgbnzpdgzmr3v97l136wzpjpbdw4c6pn3pyklw"; depends=[BayesFactor MVN]; }; @@ -1077,10 +1081,10 @@ in with self; { DIMORA = derive2 { name="DIMORA"; version="0.3.1"; sha256="11cq1fxlzs8m7hp6jchkz7fq7k50xm62aylv62m2ywyigk52hg84"; depends=[deSolve forecast minpack_lm numDeriv reshape2]; }; DIRECT = derive2 { name="DIRECT"; version="1.0.1"; sha256="00z4xlc9kxn19lw2b8xq6krsf5v3wfbr1ghl5ah5shr9dnv84lc1"; depends=[]; }; DISTRIB = derive2 { name="DISTRIB"; version="1.0"; sha256="0whwmmdx2k2vrjjkz4ww9v7z9ad3835819pby91119lyic27w727"; depends=[]; }; - DIZtools = derive2 { name="DIZtools"; version="0.0.5"; sha256="1c66kpdaxbw4vnz3zwh5v35iy9ryb67pk34r1y9m1yvkwm0i8qaz"; depends=[cleaR config data_table logger magrittr parsedate]; }; + DIZtools = derive2 { name="DIZtools"; version="0.0.6"; sha256="1rc972cqdfx0pjj9g3k2ggfsf9mhs62d72zpn0r6m3i6b6aa64q9"; depends=[cleaR config data_table logger magrittr parsedate]; }; DIZutils = derive2 { name="DIZutils"; version="0.1.1"; sha256="0023zja8vsqsfndbi37ykr6838zakd5sz1w62kzaj9x05biqsi9v"; depends=[data_table DBI DIZtools Hmisc psych RJDBC RJSONIO RPostgres xml2]; }; DIconvex = derive2 { name="DIconvex"; version="1.0.0"; sha256="0bnrq9nmryshir6ll43nz20aaqmmw0zjvfml72cpwbvrma8a3qmz"; depends=[lpSolveAPI]; }; - DImodels = derive2 { name="DImodels"; version="1.1"; sha256="0767xanj4dck6hxx392fcavwsjz8d30wymxnabr5v8s7pcsmv18p"; depends=[hnp rootSolve]; }; + DImodels = derive2 { name="DImodels"; version="1.2"; sha256="0fylyadx7dph8iv5q25s86laxgwlsi399fj9l36g9dm3ngsffbsf"; depends=[hnp multcomp rootSolve]; }; DIscBIO = derive2 { name="DIscBIO"; version="1.2.0"; sha256="1m1c9ivblk3sir6lfq0msx2vlrx37dd5v7y6003k6fmsgrfpi9fs"; depends=[AnnotationDbi boot cluster fpc ggplot2 httr igraph impute mclust NetIndices org_Hs_eg_db philentropy png RColorBrewer rpart rpart_plot RWeka SingleCellExperiment statmod TSCAN tsne]; }; DJL = derive2 { name="DJL"; version="3.8"; sha256="0ry8zyr86qdb80fd9x2inrpdasfj13k2andm0wapd1k250018js8"; depends=[car lpSolveAPI]; }; DLASSO = derive2 { name="DLASSO"; version="2.0.2"; sha256="0xdygf6h89d9z4kqb46iqfxgdzq9dmkrxf9ypw78l4d8n9xx2gaa"; depends=[MASS]; }; @@ -1091,7 +1095,7 @@ in with self; { DMLLZU = derive2 { name="DMLLZU"; version="0.1.1"; sha256="0ck87abcd5gkq69q1g5g0yshfhx94m3vgayvxgzgnkidn9mivx22"; depends=[caret gbm ISLR lmtest nnet randomForest rlang sandwich]; }; DMMF = derive2 { name="DMMF"; version="0.5.1.2"; sha256="0p82cfp0561j4ki20rznx46z7vqdxh128a0m0zj8d2wp3csn1aag"; depends=[raster rgdal sp]; }; DMRMark = derive2 { name="DMRMark"; version="1.1.1"; sha256="15wr6j0v9kvbv8y6flkp4svfqy059ziv89nxv91vp0pjmavhpdlz"; depends=[ellipse MCMCpack mvtnorm]; }; - DMRnet = derive2 { name="DMRnet"; version="0.3.2"; sha256="0lk20addc4dwgcl39p1wahqj3ivx4qhv1s776blwvwwkig8mma68"; depends=[glmnet grpreg]; }; + DMRnet = derive2 { name="DMRnet"; version="0.3.3"; sha256="05d3qmz83p5nb5ib7fffn80g0qfvpnrz7s85fqa5ajfy72f4lmgc"; depends=[glmnet grpreg]; }; DMTL = derive2 { name="DMTL"; version="0.1.2"; sha256="0z6l1sylw4ib1mgqjnrmxh2q56vazg2i7xxiw1g4gm28iq44r2n0"; depends=[caret glmnet kernlab ks randomForest]; }; DMtest = derive2 { name="DMtest"; version="1.0.0"; sha256="1bziiyv63lcbmd79fykjj6b63igbbw0pwiq37k7q9l5vij6jfcj9"; depends=[doParallel foreach matrixStats]; }; DMwR2 = derive2 { name="DMwR2"; version="0.0.2"; sha256="1vzfbz2k05j8r2hpig3d2grb99rnnh2s1sviii3prcyqicxfh0i9"; depends=[class DBI dplyr quantmod readr rpart xts zoo]; }; @@ -1111,18 +1115,18 @@ in with self; { DOvalidation = derive2 { name="DOvalidation"; version="1.1.0"; sha256="1mzws3w7djpxnfqxjcqwgia7p17kb0qlnzj6qcfg2m1vamb1cn2z"; depends=[]; }; DPBBM = derive2 { name="DPBBM"; version="0.2.5"; sha256="1qypxrcm3sb727lqb09ssjf3hblixqayw3qsyql01imrxwm609i2"; depends=[CEoptim gplots tmvtnorm VGAM]; }; DPP = derive2 { name="DPP"; version="0.1.2"; sha256="1qalcm4gwh03qpy07d0p323ccq8xmk04v6z30g7wg6ic613bqg7m"; depends=[coda Rcpp]; }; - DPQ = derive2 { name="DPQ"; version="0.5-2"; sha256="1x7rri6jh7832hka11wfm49qrxmk8kxbmcr79fq6flzmad64g5gv"; depends=[sfsmisc]; }; + DPQ = derive2 { name="DPQ"; version="0.5-3"; sha256="1jhvbyciqpbxsyi4zgn827nr3fywjc5q3ynji4i8x39i3lbwarw5"; depends=[sfsmisc]; }; DPQmpfr = derive2 { name="DPQmpfr"; version="0.3-1"; sha256="0f3l6dhiqnlix5vdz65pnxic43hcd4xiz64sh3cp8xs8cbmlnqcw"; depends=[DPQ gmp Rmpfr]; }; DPpack = derive2 { name="DPpack"; version="0.0.11"; sha256="1i2ic9w42pc1a5aqsy972rdk297q98vkqypj2vaxx0pav4m3l6lh"; depends=[dplyr e1071 ggplot2 MASS nloptr R6 Rdpack rmutil]; }; DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; }; DQAgui = derive2 { name="DQAgui"; version="0.2.1"; sha256="0k2nzkah8bjpipwaind5h1l7hpx4115kjwzncblwl5s63l7bg2gd"; depends=[data_table daterangepicker DIZtools DIZutils DQAstats DT jsonlite knitr lubridate magrittr parsedate shiny shinyalert shinydashboard shinyFiles shinyjs shinyWidgets waiter]; }; DQAstats = derive2 { name="DQAstats"; version="0.3.1"; sha256="1yyfab37rqfm77pb89vfkks5rz8il27h1kqlg6lq1q8sf2jqb2hn"; depends=[data_table DIZtools DIZutils future future_apply jsonlite kableExtra knitr magrittr parsedate rmarkdown tinytex]; }; - DR_SC = derive2 { name="DR.SC"; version="2.9"; sha256="0n2dv5ja7fyj54cd9y30mqyna3hdniwsk9xdjix6bgl1h0sj6phc"; depends=[CompQuadForm cowplot ggplot2 GiRaF MASS Matrix mclust purrr RColorBrewer Rcpp RcppArmadillo S4Vectors Seurat spatstat_geom]; }; + DR_SC = derive2 { name="DR.SC"; version="3.0"; sha256="0mbq5mjgkn807zd5nkpd2j29v0kz4q6jw09cnzavgr1gqza1pbix"; depends=[CompQuadForm cowplot ggplot2 GiRaF irlba MASS Matrix mclust purrr RColorBrewer Rcpp RcppArmadillo S4Vectors Seurat spatstat_geom]; }; DRAYL = derive2 { name="DRAYL"; version="1.0"; sha256="0cf5pyx6nwh8srdylpnmymv3dr67fm6qqpwd1hvj1wmyfc8fznpp"; depends=[cubature pracma RConics rmutil]; }; DRDID = derive2 { name="DRDID"; version="1.0.4"; sha256="09dpl6fcl557vwhcr4zs5fdyfdd65jzj3hznkf1g138szpzqnphf"; depends=[BMisc trust]; }; DRDRtest = derive2 { name="DRDRtest"; version="0.1"; sha256="1vrvwr441w526a80s0r2fwqlllvn05ir8v2152jz2wxrwhnpq1s0"; depends=[KernSmooth SuperLearner]; }; DREGAR = derive2 { name="DREGAR"; version="0.1.3.0"; sha256="15cplshs85r0z659mc7xmj5db7vc95wxs01c34isc22p8z0a287i"; depends=[msgps]; }; - DRHotNet = derive2 { name="DRHotNet"; version="2.0"; sha256="1hj321qy6jvdicxksnrkzwhdgzjs7pl1bxj6bm0135qjpfmj3v8m"; depends=[maptools PBSmapping raster sp spatstat spatstat_core spatstat_geom spatstat_linnet spdep]; }; + DRHotNet = derive2 { name="DRHotNet"; version="2.1"; sha256="0w1bi7amr0701m6gx9b4pm35qs4my9dgs1dwh2qklrk8b29jv2b3"; depends=[maptools PBSmapping raster sp spatstat spatstat_geom spatstat_linnet spdep]; }; DRIP = derive2 { name="DRIP"; version="1.7"; sha256="1926qmxxmmhbr6hwn4jkm553h5lj84g37rgvjy36kb4b8vpnlkd5"; depends=[]; }; DRR = derive2 { name="DRR"; version="0.0.4"; sha256="1y70si1gig4l7jx5jiqsqliyywfsvimkx53x3zh1lc3yj2j6bqwk"; depends=[CVST kernlab Matrix]; }; DRaWR = derive2 { name="DRaWR"; version="1.0.3"; sha256="1pschc911zrcgy6vmh9aylz79qfifxvxrm5gxwah7xv50plpar78"; depends=[Matrix ROCR]; }; @@ -1151,7 +1155,7 @@ in with self; { DTR = derive2 { name="DTR"; version="1.7"; sha256="1lzvk9ar6xf3n2vvy8vb9mvrbx3nafzzhvz5g7vf79jd71yz54jd"; depends=[aod ggplot2 survival]; }; DTRlearn2 = derive2 { name="DTRlearn2"; version="1.1"; sha256="0l756zb1wkpa1z5zjkc8jndmh2630gckxxfqslabzjmgsjf7fjgm"; depends=[foreach glmnet kernlab MASS Matrix]; }; DTRreg = derive2 { name="DTRreg"; version="1.7"; sha256="0fr2c8fg1acs2kk0r67zml5fp71mvxw116ixqf7yq34n9ljd5yph"; depends=[dplyr MASS]; }; - DTSEA = derive2 { name="DTSEA"; version="0.0.2"; sha256="00jndqn4vyjymy6ys2rqxqd1fwf6bdqiv831g905k6nczxh8d7wv"; depends=[dplyr fgsea igraph magrittr tibble tidyr]; }; + DTSEA = derive2 { name="DTSEA"; version="0.0.3"; sha256="1f1di9ypq6f0929pq15xncf7zw16wlqap4rchbia27n39cv15dni"; depends=[BiocParallel dplyr fgsea igraph magrittr stringr tibble tidyr]; }; DTSg = derive2 { name="DTSg"; version="1.1.1"; sha256="1pg3xqkwv75pla3x3vdffmvzsjcaq5b91svykrr8q25p3ikfj6b6"; depends=[checkmate data_table R6]; }; DTWBI = derive2 { name="DTWBI"; version="1.1"; sha256="06lp4yc5nhacrgic78l014g2w1ibwgs8dp8zrahk5aripaczl25y"; depends=[dtw e1071 entropy lsa rlist]; }; DTWUMI = derive2 { name="DTWUMI"; version="1.0"; sha256="0pybgbfs2yp2ljbs0kra5z70x3llkiwdngp6cadgs3j9rar4vq4q"; depends=[dtw DTWBI e1071 entropy lsa rlist]; }; @@ -1184,18 +1188,18 @@ in with self; { DataViz = derive2 { name="DataViz"; version="0.2.8"; sha256="1dr5nvdzc63x9ymlysvv5i8b7zcffq13pa39q0ychdwr1s3x7vzw"; depends=[Rcpp tibble]; }; DatabaseConnector = derive2 { name="DatabaseConnector"; version="5.1.0"; sha256="0vc6rszv148qcjc8j4snskw9xlxb1mk3hbi3lnwllp9vxydqw1yf"; depends=[bit64 DBI readr rJava rlang SqlRender stringr urltools]; }; DatabaseConnectorJars = derive2 { name="DatabaseConnectorJars"; version="1.1.0"; sha256="18m6ynj30r5xdy51b3s39h0jcz1k2wgka888skr6ds2233lhqk2w"; depends=[rJava]; }; - DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.1.5"; sha256="1m5ydlyj54ybw38b6i78krrvqj29bp24x19xbqz9fgwpqimnv79y"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; }; + DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.1.6"; sha256="0i96664h4d6b76xk7c2vdma2am627acfzr79wyy8i17ciis452ph"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; }; DatastreamDSWS2R = derive2 { name="DatastreamDSWS2R"; version="1.8.2"; sha256="018733gm5z90qhbci6khxx27pn074si176mwnlq53bd6r722jiwm"; depends=[dplyr foreach httr jsonlite stringi stringr xts zoo]; }; Davies = derive2 { name="Davies"; version="1.2-0"; sha256="0n2pqipv0b1w2zjvycms0kyk7h8ps49f5jlzgyxhy9dlyr0ivaml"; depends=[mathjaxr]; }; DeCAFS = derive2 { name="DeCAFS"; version="3.3.1"; sha256="1508pl1jwp9ypfg31ygyrx1abckivv3xb69qd7hq6w1xvlkc83qr"; depends=[ggplot2 Rcpp robustbase]; }; DeRezende_Ferreira = derive2 { name="DeRezende.Ferreira"; version="0.1.0"; sha256="05c99z3hlwwm0p02cl9z6gjwfxfq2b2qn90l85270bi16llgf42h"; depends=[xts]; }; DeclareDesign = derive2 { name="DeclareDesign"; version="1.0.0"; sha256="151139zq0sx4mlskc054jn408j90l8603shrwx1qcgr2dljbwnfh"; depends=[estimatr fabricatr generics randomizr rlang]; }; - DecomposeR = derive2 { name="DecomposeR"; version="1.0.4"; sha256="0px999jzxnsl9mg4nch0zwzfjpm5mfj1yk5q42vbb7q42iv1ifbf"; depends=[colorRamps dplyr hexbin hht StratigrapheR tictoc usethis]; }; + DecomposeR = derive2 { name="DecomposeR"; version="1.0.5"; sha256="011j577gslh8nfykpxph4bprvv48nw9asy2j40dw016ai07h8n0s"; depends=[colorRamps dplyr hexbin StratigrapheR tictoc usethis]; }; DecorateR = derive2 { name="DecorateR"; version="0.1.2"; sha256="1za2qvdq96f75rmnm421xmq8s01ny4666ghv14i72iy3s4ml2hq9"; depends=[rJava RWeka RWekajars]; }; Deducer = derive2 { name="Deducer"; version="0.7-9"; sha256="14kakyf28i654pndlswjzp6h3h7szpznrg6xznqg150mmn0bs3s6"; depends=[car e1071 effects foreign ggplot2 JGR MASS multcomp plyr rJava scales]; }; DeductiveR = derive2 { name="DeductiveR"; version="1.0.0"; sha256="0bx1ad2gw0pf03z0im31mzaa26jxwws6fkbcj319kd8b4s4wp92y"; depends=[dplyr ggplot2 moments reshape2]; }; Delaporte = derive2 { name="Delaporte"; version="8.0.3"; sha256="1d1jkbxlwnqznh9pkjpkr7np2nmqzjvrdmlb210y1lb08mqmb73w"; depends=[]; }; - DelayedEffect_Design = derive2 { name="DelayedEffect.Design"; version="0.0.4"; sha256="0n1dw9bqisfarg7him49mzqn60gcfr660d5x9k6b37r12dnmy48v"; depends=[msm survival]; }; + DelayedEffect_Design = derive2 { name="DelayedEffect.Design"; version="1.1.2"; sha256="1qx82r04d0bnr8k961fgp4rmy62rw0xfzzdamyfc8f5r92lk18yr"; depends=[]; }; Delta = derive2 { name="Delta"; version="0.2.0.3"; sha256="0bi9qca4ky481zycp8r7ihvqfjkpvi7hb9wrjsw9avawqa6ck9bv"; depends=[]; }; DeltaMAN = derive2 { name="DeltaMAN"; version="0.5.0"; sha256="08barq4s7m3migjs80207n6l10pr3v2hb1dy72fi59j9x9xgnn4v"; depends=[knitr shiny shinyBS shinyMatrix xtable]; }; DemoDecomp = derive2 { name="DemoDecomp"; version="1.0.1"; sha256="0m24ld8s3ph8qcbkqma5y5k5nv0d0vgb7wz8q20gxnfbj2kbcvjv"; depends=[Rdpack]; }; @@ -1205,6 +1209,7 @@ in with self; { DendroSync = derive2 { name="DendroSync"; version="0.1.4"; sha256="0jypfdjcjqv2vd3l52hq696gdni303dw5l0nq9hhngc18v2imqa2"; depends=[ggplot2 gridExtra nlme]; }; DensParcorr = derive2 { name="DensParcorr"; version="1.1"; sha256="1ifkg7cpimf27yhr60rks77r16kmhwa5h10wv7b64sbfncnyzfmj"; depends=[clime gplots]; }; DepLogo = derive2 { name="DepLogo"; version="1.2"; sha256="13y3akmrj5x1mn1sgha1jryzswg4kqxwswbm3m5z92mcm2zw4r9l"; depends=[]; }; + DependencyReviewer = derive2 { name="DependencyReviewer"; version="1.0.0"; sha256="1pa5cvh29kvv80nfganfd16xmrwpp51qwy6q0qwk0y8wy66isd26"; depends=[cli desc dplyr DT GGally ggplot2 ggraph glue here knitr lintr magrittr pak readr rlang shiny shinyAce stringr tidygraph tidyverse]; }; DepthProc = derive2 { name="DepthProc"; version="2.1.5"; sha256="0i7fks5hglf3xj8cj3sghjf0xcldhiqwf0jlpyk2a3mj9gaszc76"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; Deriv = derive2 { name="Deriv"; version="4.1.3"; sha256="130g3mv0z9sqs6y23a0a94512iiw05yr6fp378vhdxxbignzbnyv"; depends=[]; }; DescTools = derive2 { name="DescTools"; version="0.99.47"; sha256="0dd1n2dwyh8sdsmmsqj670hmawffqck35qdanrgb4yfcc0zzmd1j"; depends=[BH boot data_table Exact expm gld httr MASS mvtnorm Rcpp readxl rstudioapi]; }; @@ -1219,7 +1224,6 @@ in with self; { DetLifeInsurance = derive2 { name="DetLifeInsurance"; version="0.1.3"; sha256="15yh66mn84cm5ix99lg5lp783dp8il03dyirkhil7m5pwzss42r4"; depends=[]; }; DetMCD = derive2 { name="DetMCD"; version="0.0.5"; sha256="034wb5hwpikli6h2rwiqr19qvzxrr4qwi4q436y7c5a5wgkfzgl5"; depends=[pcaPP Rcpp RcppEigen robustbase]; }; DetR = derive2 { name="DetR"; version="0.0.5"; sha256="1dd4nzkgj5pl9397aa0z3q5fpl27xbdf7q0pqbs821dyynylxzn9"; depends=[MASS pcaPP Rcpp RcppEigen robustbase]; }; - DetSel = derive2 { name="DetSel"; version="1.0.4"; sha256="01mpjy1cmgbrchdjl0gmrq3zx3mlkznml1qcradj2v5mgz26ifrv"; depends=[ash]; }; DevTreatRules = derive2 { name="DevTreatRules"; version="1.1.0"; sha256="1h4p78mwl5ir31hfb38x1dwq5xxbdlsasvk5vxa3c7xdvhsd2yrf"; depends=[DynTxRegime glmnet modelObj]; }; Devore7 = derive2 { name="Devore7"; version="0.7.6"; sha256="1m18p8h9vv4v0aq2fkjyj39vzb8a09azbbczhfiv4y88w540i8nw"; depends=[lattice MASS]; }; Dforest = derive2 { name="Dforest"; version="0.4.2"; sha256="19jyph2zqfyq9vv22kb6fqy89l0vcviv19zgk10hbd7q850f6ryn"; depends=[ggplot2 rpart]; }; @@ -1240,7 +1244,6 @@ in with self; { DidacticBoost = derive2 { name="DidacticBoost"; version="0.1.1"; sha256="0z1h61n6nfjvb64fgkzi1sq7ag747crhh593hxkx0cpza29778rz"; depends=[rpart]; }; Diderot = derive2 { name="Diderot"; version="0.13"; sha256="04d1drxn99r0fqq3zym7yyip9c8rfqhghq20q4zyb42l3hfgv9ai"; depends=[data_table doParallel foreach igraph RCurl splitstackshape stringi]; }; DiffCorr = derive2 { name="DiffCorr"; version="0.4.2"; sha256="0q7slvyqajbr1pa4k3dc7jfn6qi6i2fnvh7hl49qi3a60yr55mir"; depends=[fdrtool igraph multtest pcaMethods]; }; - DiffNet = derive2 { name="DiffNet"; version="1.0-0"; sha256="04dvf0qxnc6jizwfjxw731j7d2fxyapk06rmqvga6h3p075q0mqk"; depends=[data_table doParallel foreach gplots Hmisc igraph lsa Matrix qlcMatrix Rcpp RcppEigen]; }; DiffXTables = derive2 { name="DiffXTables"; version="0.1.3"; sha256="0a0q1fz80jlcrk4rw70yjb8djxgsm5axih45vi4dqpg6n8xlrzw2"; depends=[pander Rdpack]; }; DirStats = derive2 { name="DirStats"; version="0.1.8"; sha256="0drk6b7nncsydvikxy2jh7kmsjvkwx32csh0r8ygn9hdqliw4pfk"; depends=[movMF rotasym]; }; Dire = derive2 { name="Dire"; version="2.1.0"; sha256="1hpa8mgb7mpnq679qbb37wll9ng1ar4zbqr0ca16kn26rg95ywbp"; depends=[foreach haven iterators MASS Matrix Rcpp RcppArmadillo]; }; @@ -1260,7 +1263,8 @@ in with self; { Disequilibrium = derive2 { name="Disequilibrium"; version="1.1"; sha256="1jm5n01ih4rnga13058yh939zp2lvjn5pgb6rrwp5fdlk5kqsgb0"; depends=[Formula numDeriv optimr]; }; DisimForMixed = derive2 { name="DisimForMixed"; version="0.2"; sha256="00mknsalikangr17946877m5fy2jgkgasgl6ng4f2nr44f0q9l6q"; depends=[cluster dplyr]; }; DistPlotter = derive2 { name="DistPlotter"; version="0.0.2"; sha256="0aws4qs6802y42m07ca9m4i0lza282g6kfzx64q652y52md862gk"; depends=[colourpicker dplyr DT extraDistr ggplot2 rio scales shiny shinyalert shinyBS shinyjs shinyWidgets stringi stringr]; }; - Distance = derive2 { name="Distance"; version="1.0.6"; sha256="07cqamddcycyjwppnxjccyq33nycb9kf76irfr8x634wr9ybwn4k"; depends=[dplyr mrds rlang]; }; + Distance = derive2 { name="Distance"; version="1.0.7"; sha256="1ilp1gmxk92ycipzzvwpnry62kw0jdfch3ga2y0jhxsbp41km13p"; depends=[dplyr mrds rlang]; }; + DistatisR = derive2 { name="DistatisR"; version="1.1.1"; sha256="0r8gp84kbl8kbsw3kbp8sk0xc2gav074qc9qlkq06bp0sxycwhyw"; depends=[car dplyr prettyGraphs readxl tidytext]; }; DistributionFitR = derive2 { name="DistributionFitR"; version="0.1"; sha256="0wg43gqsdy1ja0l489k27k9q1w2zq45wzmqnv9wfc734rf8kvlba"; depends=[doParallel foreach stringr]; }; DistributionOptimization = derive2 { name="DistributionOptimization"; version="1.2.6"; sha256="0pp0f7c9szyx426bnnz4fz4vh5q73m8x896z6pqgx04b6v445361"; depends=[AdaptGauss GA ggplot2 pracma]; }; DistributionTest = derive2 { name="DistributionTest"; version="1.1"; sha256="11xhr6yv42s1i4qqlb1pvzm8q2116v10gjlkhl0ml3id6lx27nmj"; depends=[MASS]; }; @@ -1279,7 +1283,7 @@ in with self; { DoseFinding = derive2 { name="DoseFinding"; version="1.0-2"; sha256="15wpr8wiqjar9hlgcv8y2gjxv6531q3b69jxh2kq10k7bni3rshb"; depends=[lattice mvtnorm]; }; DoubleCone = derive2 { name="DoubleCone"; version="1.1"; sha256="1kbvsj93nn2306s6pgqiiznmlcn2nqsgcxinihl613ivczxhzpqg"; depends=[coneproj MASS Matrix]; }; DoubleExpSeq = derive2 { name="DoubleExpSeq"; version="1.1"; sha256="00xpj5xmpgmvp6h76imkmghrnlfk6c50ydvv0jram6m6ix3z8323"; depends=[numDeriv]; }; - DoubleML = derive2 { name="DoubleML"; version="0.5.1"; sha256="0v4dyjgs1gim06cjv1hi7n2zpjzj16405rh24rvcixr60n8gzqh5"; depends=[checkmate clusterGeneration data_table mlr3 mlr3learners mlr3misc mlr3tuning mvtnorm R6 readstata13]; }; + DoubleML = derive2 { name="DoubleML"; version="0.5.2"; sha256="1984slxllcl9kk7zch8xz8w1asnnqscf4mn0cy3wqbl7vd8dc01z"; depends=[checkmate clusterGeneration data_table mlr3 mlr3learners mlr3misc mlr3tuning mvtnorm R6 readstata13]; }; Dowd = derive2 { name="Dowd"; version="0.12"; sha256="1fgaq22n7gm8pqxdfkiayqgjfqjn7knjjjr1x12jgv77cv08xyjk"; depends=[bootstrap forecast MASS]; }; Dpit = derive2 { name="Dpit"; version="1.0"; sha256="02pnc00sk3bwxmxrg27638x0q62r7nsx2nr14zjjc5q880prdisv"; depends=[fitdistrplus gsl moments VGAM]; }; DrBats = derive2 { name="DrBats"; version="0.1.6"; sha256="1623h8s6y4klq8xmj480ga2wl6n4c2f26v1dwysyvcrk6lnaghdm"; depends=[ade4 coda MASS Matrix rstan sde]; }; @@ -1288,19 +1292,19 @@ in with self; { DramaAnalysis = derive2 { name="DramaAnalysis"; version="3.0.2"; sha256="0nsnwais0r592c50nphfzkr1bbygl67mriwsx7dxbvmpdsswlvl1"; depends=[data_table git2r httr readr reshape2 stringr tokenizers xml2]; }; DriftBurstHypothesis = derive2 { name="DriftBurstHypothesis"; version="0.4.0.1"; sha256="1pmsbv1rl79s520nxj536m8gf7xyfjskj8r88rxmxscbgp8c1xz2"; depends=[Rcpp RcppArmadillo xts zoo]; }; DrillR = derive2 { name="DrillR"; version="0.1"; sha256="0n7pim5kk0wfdjcc67v4vvdb7wyhn5bcgi2a12nbyfyydss7pk1g"; depends=[httr]; }; - DriveML = derive2 { name="DriveML"; version="0.1.4"; sha256="0177bglwzxsglv5aaddl03fvxyq31ikcwfyws36jg8q8s7p60w49"; depends=[caTools data_table ggplot2 iml mlr ParamHelpers rmarkdown sampling SmartEDA]; }; + DriveML = derive2 { name="DriveML"; version="0.1.5"; sha256="0gbrrlz40cs95ml92k7q1lrxkm9iv5bjsr2sy9c7jzygnrlmnmms"; depends=[caTools data_table ggplot2 iml mlr ParamHelpers rmarkdown sampling SmartEDA]; }; DrugClust = derive2 { name="DrugClust"; version="0.2"; sha256="0acvjqwzkbjmy101m501l7fkfxzkp6zflwvn56li5307xv9ggnfg"; depends=[cclust cluster e1071 MESS ROCR]; }; + DrugSim2DR = derive2 { name="DrugSim2DR"; version="0.1.0"; sha256="16m1gqs5m7pi8nlr6n8wh7dk3wjjiwhiqm96h8jxavfizv0bkj6n"; depends=[ChemmineR igraph pheatmap reshape2 rvest sp tidyr]; }; DstarM = derive2 { name="DstarM"; version="0.4.0"; sha256="0wm5kr2pkgbvh9svjq8zq46zn50hwf58rs3y1ybnwcfjc2q75h1s"; depends=[DEoptim ggplot2 Rcpp RcppArmadillo rtdists RWiener]; }; DtD = derive2 { name="DtD"; version="0.2.2"; sha256="1czspjdxjhbfk2df7wk0x3d1ilwrjqw4s4gdc4hq0gjcjqyx0c39"; depends=[checkmate Rcpp RcppArmadillo]; }; DySS = derive2 { name="DySS"; version="1.0"; sha256="1aa67m224bhzzg089rhxwqgbmwwq5py8ikix8khwraz5cnjz2f83"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo]; }; Dykstra = derive2 { name="Dykstra"; version="1.0-0"; sha256="1rc1409ky0ysqr3ccq28yhbs94m6d0z2dfa66k4c7irxjvbagwz6"; depends=[]; }; DynClust = derive2 { name="DynClust"; version="3.24"; sha256="0nbbzx0ixblpcbjxx0gp7082nz6nh5vc2l5nzdfq1mqzlq9jy2xn"; depends=[]; }; - DynComm = derive2 { name="DynComm"; version="2020.1.6"; sha256="09nhcp9rldwrybwhyg86mgpgwq4hzlpp4rm5a5gl33nnhvcdm0mx"; depends=[igraph Rcpp Rdpack]; }; - DynForest = derive2 { name="DynForest"; version="1.0.0"; sha256="1ldwhn971sr6cxbk2z5kd6wfwqhv5bjcb5rqzf29wqskqb5rjh4p"; depends=[cmprsk DescTools doParallel foreach ggplot2 lcmm pbapply pec prodlim stringr survival zoo]; }; + DynForest = derive2 { name="DynForest"; version="1.1.0"; sha256="0fnszfbk2gkgff48cv6ij87w44hspkw62flvgvkwf6hlbb5j64k7"; depends=[cmprsk DescTools doParallel foreach ggplot2 lcmm pbapply pec prodlim stringr survival zoo]; }; DynNom = derive2 { name="DynNom"; version="5.0.2"; sha256="1zs8chdw83qjsi5k1m9cvk48swqz3gadycmhk4prxmjzwcl5z4i1"; depends=[BBmisc compare dplyr ggplot2 magrittr plotly prediction rms shiny stargazer survival]; }; DynTxRegime = derive2 { name="DynTxRegime"; version="4.11"; sha256="181hmfkv0sgxlllfhx0rwl57r1ql2iy19iipsrvkabflqhzdr8cc"; depends=[dfoptim kernlab modelObj rgenoud]; }; DynaRankR = derive2 { name="DynaRankR"; version="1.1.0"; sha256="1fzicainh1dm016cglm2x6j1i2g5r71vgrj0dnsflbxc5v426sqm"; depends=[dplyr rlang]; }; - DynamicGP = derive2 { name="DynamicGP"; version="1.1-8"; sha256="1ivrxm0asagvp0ay6hp1l29fv3mcfmad938mwxdcq3iaaj31ilvc"; depends=[lhs]; }; + DynamicGP = derive2 { name="DynamicGP"; version="1.1-9"; sha256="00hf3r39b9xid129kzgdnwdfrwrspxkz7dydgna3c5lrl7670paz"; depends=[lhs]; }; DynareR = derive2 { name="DynareR"; version="0.1.3"; sha256="06n0gsbn8gphsirj3l1izd84dnjnik6n5l4vkp8flkzynccx3rps"; depends=[kableExtra knitr magrittr]; }; DysPIA = derive2 { name="DysPIA"; version="1.3"; sha256="0ih8sl89h6xbmmjjsbxcvgp6wqk7f1wqzwkc43k3i5w7fgb0hlpc"; depends=[BiocParallel data_table DysPIAData fastmatch parmigene Rcpp]; }; DysPIAData = derive2 { name="DysPIAData"; version="0.1.2"; sha256="1i4z9xhnzih7jnj3l1d6wpgfsayb452sh4q99w2npg1iipsjb1vl"; depends=[]; }; @@ -1314,12 +1318,13 @@ in with self; { ECGofTestDx = derive2 { name="ECGofTestDx"; version="0.4"; sha256="0y8bw1k9spwxyzc7vsi2iblnmjsidxbybjrzzh2j6frjmv3rk4g1"; depends=[bootstrap orthopolynom]; }; ECLRMC = derive2 { name="ECLRMC"; version="1.0"; sha256="01z2hmbpb754s2rsvx3i5wf7kkkr2mvs2g89ih2bqrif7w5rmgyg"; depends=[softImpute]; }; ECOSolveR = derive2 { name="ECOSolveR"; version="0.5.4"; sha256="0973m346vakgddp92dzqlky0wa196hj341r9y7rz67bc2zl8jx2x"; depends=[]; }; - ECOTOXr = derive2 { name="ECOTOXr"; version="0.1.1"; sha256="1pwncfvjcaniixc3iljjapp1d2pvf5xqj060jbf9bpdfyn6lrcdj"; depends=[crayon dplyr rappdirs readr RSQLite rvest stringr]; }; + ECOTOXr = derive2 { name="ECOTOXr"; version="0.2.0"; sha256="0gpzf957ya02695ga8cv3mw17jb027w10pjxq9r5ziky54wnh7qh"; depends=[crayon dbplyr dplyr httr purrr rappdirs readr rlang RSQLite rvest stringr tibble tidyr tidyselect]; }; ECTTDNN = derive2 { name="ECTTDNN"; version="0.1.0"; sha256="1ddwf040yp4c7nxvivml0xhad5qdc6jlf17c1lh4mssm5c0pp14w"; depends=[forecast urca vars]; }; ECctmc = derive2 { name="ECctmc"; version="0.2.5"; sha256="0prryvc17bm1xrhzlqk2w9nj181bg99j1dph3d36h0n1vfq1d7if"; depends=[Rcpp RcppArmadillo]; }; ECharts2Shiny = derive2 { name="ECharts2Shiny"; version="0.2.13"; sha256="0dq8ja4ydxnc7qx35qhh9ryqgi7ambwz6ka2821mmq3p994crswn"; depends=[jsonlite shiny]; }; ECoL = derive2 { name="ECoL"; version="0.3.0"; sha256="02j4yl6hi83f6m529r6n0gaz8wsy2pi0ncy2g95fjhs8ib0kfn4f"; depends=[cluster e1071 FNN igraph MASS]; }; EDA = derive2 { name="EDA"; version="1.3"; sha256="08zqykvga7w07iy00c94q03mrxmjv649ggk7lmksjzy5j3wgyb6d"; depends=[ggplot2]; }; + EDCimport = derive2 { name="EDCimport"; version="0.2.1"; sha256="1d80dsfi94yg95lcnq60nnfpfd2bphqrd68k7ilcs809v95da4nx"; depends=[cli dplyr forcats glue haven labelled purrr readr rlang stringr tibble tidyr]; }; EDFtest = derive2 { name="EDFtest"; version="0.1.0"; sha256="1z6ayi0513ibyk0gjfxcd1rybp5374xhbf9zkkm669wdmfggx26h"; depends=[CompQuadForm rmutil]; }; EDISON = derive2 { name="EDISON"; version="1.1.1"; sha256="12cc13ng5fc4nm0nvqxqplpb2ycz4cln73xqkk85dka2fnpykjc7"; depends=[corpcor MASS]; }; EDIutils = derive2 { name="EDIutils"; version="1.0.2"; sha256="1yfn26js5sdr7k07s45mqxla6apzb4ykwa5pa634zgivqs6g9jry"; depends=[curl httr jsonlite xml2]; }; @@ -1341,12 +1346,12 @@ in with self; { EGAnet = derive2 { name="EGAnet"; version="1.2.3"; sha256="10vfv8fkk8kfcspp4p8avz16ipj58231q43rzrmwmcfx362q3g48"; depends=[GGally ggdendro ggplot2 ggpubr glasso igraph lavaan Matrix matrixcalc network OpenMx pbapply qgraph semPlot]; }; EGRET = derive2 { name="EGRET"; version="3.0.7"; sha256="1fxpcdsq7njf1hjy3a4i0fx0ah9v7jzmdwg4c7009nikyhx5ri6x"; depends=[dataRetrieval fields foreach MASS survival truncnorm]; }; EGRETci = derive2 { name="EGRETci"; version="2.0.4"; sha256="1g01a03smn5yp261cyk3x310m1mcv4bqyh8y123wam9gpa7dxrp6"; depends=[binom EGRET]; }; + EGRNi = derive2 { name="EGRNi"; version="0.1.6"; sha256="0wgdhlmnch6gpypqlwd5z56ia03lbbimr4ci9gcfs8f881dh92dy"; depends=[fdrtool gdata MASS readr]; }; EHR = derive2 { name="EHR"; version="0.4-10"; sha256="062smk24f3jv7m0833h6nygrk7pq3n85a5sq1j752i0z1j2px3np"; depends=[data_table lubridate pkdata]; }; EHRtemporalVariability = derive2 { name="EHRtemporalVariability"; version="1.1.4"; sha256="02izrgl526znn4xs10c5l3gv0b5chmgr376i26nli988cypmf32h"; depends=[dplyr lubridate MASS plotly RColorBrewer scales viridis xts zoo]; }; EIAdata = derive2 { name="EIAdata"; version="0.1.3"; sha256="0cx8x16jn8pfik7yd6vfqh23fqlfxnfj3ya42h5zbvsbka8rislh"; depends=[httr XML xts zoo]; }; EIX = derive2 { name="EIX"; version="1.2.0"; sha256="02ry0aqqnd0zh6zbvx1dbq3sdahyqcgabhkvbbw4ig0qk70w62aj"; depends=[DALEX data_table ggiraphExtra ggplot2 ggrepel iBreakDown MASS purrr scales tidyr xgboost]; }; EKMCMC = derive2 { name="EKMCMC"; version="1.1.2"; sha256="0filw1xikbv55h7xswlqifd30d43b9y3h2m6i0zv8v54y8mmszfg"; depends=[numDeriv]; }; - EL = derive2 { name="EL"; version="1.1"; sha256="0a6zbsq37miy7mv1b2gn3nlddlxpl6v5338lqxa2hn8ykj4vbs63"; depends=[]; }; EL2Surv = derive2 { name="EL2Surv"; version="1.1"; sha256="0bn2481rf61qnia468y7k95hhazjaghrv919a2y9ar5wcz5nq2kk"; depends=[survival]; }; ELCIC = derive2 { name="ELCIC"; version="0.2.0"; sha256="1iildkyiia2zinnfjyxvcmc1xd7chrcsdqzc0v7cl9b1jsqa8361"; depends=[bindata geepack MASS mvtnorm PoisNor wgeesel]; }; ELISAtools = derive2 { name="ELISAtools"; version="0.1.5"; sha256="18f2adhw85f0hsz5gb6xhi0w2phcq364xy9y1jri6ckzs8g0pny7"; depends=[minpack_lm R2HTML stringi]; }; @@ -1362,7 +1367,7 @@ in with self; { EMDANNhybrid = derive2 { name="EMDANNhybrid"; version="0.1.0"; sha256="0mm5zfkrja9pz58psp7b6r1lpixaa9y685xxv9srv9l9cl8d892j"; depends=[EMD forecast nnfor]; }; EMDSVRhybrid = derive2 { name="EMDSVRhybrid"; version="0.1.0"; sha256="0wis8dh4xd5xldrrfzfr625pix2fvp139q6kj9ff2m6p5wafiabw"; depends=[e1071 EMD]; }; EML = derive2 { name="EML"; version="2.0.6.1"; sha256="1k2chfz6qixa6jsikqgilqp8j49mcshn725ck1h77bacfxfhf7za"; depends=[digest dplyr emld jqr jsonlite rmarkdown uuid xml2]; }; - EMLI = derive2 { name="EMLI"; version="0.1.0"; sha256="17gcrqw3dnv48jiqxldf0y00ncr75521r4cp4p4q0v2cj3h6fl2h"; depends=[]; }; + EMLI = derive2 { name="EMLI"; version="0.2.0"; sha256="0zwbbxsmkyrgmva5h8l78f181nz5asc7dpdcmajvj2y3yl1rb278"; depends=[]; }; EMMAgeo = derive2 { name="EMMAgeo"; version="0.9.7"; sha256="1wz4zw45xfqbk589cpd188j7619h2ar2czfkisil9x8ksijfixls"; depends=[caTools GPArotation limSolve matrixStats shiny]; }; EMMIXSSL = derive2 { name="EMMIXSSL"; version="1.1.1"; sha256="1z8mqh4d0vlxhk2mvpxwypr5labra3z4xsvpm4li1v4hga791h0v"; depends=[mvtnorm]; }; EMMIXgene = derive2 { name="EMMIXgene"; version="0.1.3"; sha256="0a5q78s9y6ba1641lrv87kglg39x9wbk5xg7ihzbpl4adrb5sz4f"; depends=[BH ggplot2 mclust Rcpp RcppArmadillo reshape scales]; }; @@ -1375,10 +1380,9 @@ in with self; { EMSS = derive2 { name="EMSS"; version="1.1.1"; sha256="0zkr2xfvwlqxcfj59801vm54l38agipbkd9qgq6jkmqkdbkfv3yr"; depends=[mvtnorm sampleSelection]; }; EMSaov = derive2 { name="EMSaov"; version="2.3"; sha256="1hpvwimhkl7za5s8j9n4a8883vy89jrxrhlh0k3cfprnndh4zz05"; depends=[shiny]; }; EMT = derive2 { name="EMT"; version="1.2"; sha256="07c25nw8n6294f7q1axwraqp4x2p5dprgd8f9sldn2w6jslzvvc8"; depends=[]; }; - EMVS = derive2 { name="EMVS"; version="1.2.1"; sha256="1aikms2i77hwv6hrk8kn9wrh1v5j5zm918cwdwm5s6cy8fcqf406"; depends=[Rcpp RcppArmadillo]; }; EMbC = derive2 { name="EMbC"; version="2.0.3"; sha256="0ns6jmshblf00n4harhls03q9c6h1wvgvjzn8jvr3kf4gm2iz2jd"; depends=[maptools mnormt RColorBrewer Rcpp RcppArmadillo sp]; }; EMpeaksR = derive2 { name="EMpeaksR"; version="0.2.0"; sha256="1f8s6p3h5594aajrvrx8iv5x8m97xbc1pynsrk6i13aw5r73ysb1"; depends=[]; }; - ENMTools = derive2 { name="ENMTools"; version="1.0.6"; sha256="0idjq7jk1yrbk9w0799x991n1sj71j09hkgn6dhwshgpyxh7c4qj"; depends=[dismo ENMeval forcats ggplot2 ggpubr gridExtra knitr lhs magrittr raster rgdal rgeos sp spatstat_geom spatstat_random]; }; + ENMTools = derive2 { name="ENMTools"; version="1.0.7"; sha256="1sm64c9d5ph8sp5lzkzkd93iy8hls73xfshvjgnmqmd6zh4xp70g"; depends=[dismo ENMeval forcats ggplot2 ggpubr gridExtra knitr lhs magrittr raster rgdal rgeos sp spatstat_geom spatstat_random]; }; ENMeval = derive2 { name="ENMeval"; version="2.0.3"; sha256="0h9wikxs01xhpkp1khhxnnqvg4fgmdvh37jh15nz7i4xilx1ffab"; depends=[dismo doParallel doSNOW dplyr foreach ggplot2 glmnet magrittr maxnet rangeModelMetadata raster rlang sp testthat tidyr]; }; EPGMr = derive2 { name="EPGMr"; version="1.0.0"; sha256="1ii4lccv4hyydy3sd5l7c22pgx27x3mdml20sfbdj85pmpyab6q9"; depends=[]; }; EPT = derive2 { name="EPT"; version="0.7.6"; sha256="1hkisfisi63dd9lai662y387av1g77fkbai0p2a346n8zgahysji"; depends=[]; }; @@ -1390,7 +1394,8 @@ in with self; { ERSA = derive2 { name="ERSA"; version="0.1.3"; sha256="0djh633vmc89vl4bp7p4bazlb0pshpd2yckfj0yjk6vc9lrbql69"; depends=[broom car combinat dplyr ggplot2 leaps miniUI purrr RColorBrewer shiny tidyr]; }; ESG = derive2 { name="ESG"; version="1.2"; sha256="17kw82dikcibqsdb1fvbx2x2f3shzbqggygabprcvwki8bg9hgni"; depends=[]; }; ESTER = derive2 { name="ESTER"; version="0.2.0"; sha256="1jiyqq5hgqc754r434sik9jnlpw66xz56cjdf5ig95qkffzsg224"; depends=[brms cowplot doParallel dplyr foreach ggplot2 lme4 magrittr rlang tidyr]; }; - ETAS = derive2 { name="ETAS"; version="0.4.9"; sha256="11sv5slr3s6w82ksgbw0qlzi9palznbzprq2n9iiifxz6ff5drvd"; depends=[fields goftest lattice maps Rcpp spatstat_core spatstat_geom spatstat_random]; }; + EScvtmle = derive2 { name="EScvtmle"; version="0.0.1"; sha256="09sh9njnrv8bh6xlni3jmhwrp3yb6xxfx6di2ykam6mi50djknbf"; depends=[dplyr ggplot2 gridExtra MASS origami stringr SuperLearner tidyselect]; }; + ETAS = derive2 { name="ETAS"; version="0.5.1"; sha256="03721z7fsbkqv5wiybm01nxbl99x8wf2214y3w139k0zr42xk94s"; depends=[fields goftest lattice maps Rcpp spatstat_explore spatstat_geom spatstat_random]; }; ETC = derive2 { name="ETC"; version="1.5"; sha256="16ciff8bf2p56941r83y7405sp5pfms63dwjd232ih3mnznjpc0f"; depends=[mvtnorm]; }; ETLUtils = derive2 { name="ETLUtils"; version="1.5"; sha256="0s0q4f3wzpdd87l3pnzysa8aq7zgz29589xnm65a6xfy9znbpzs3"; depends=[bit ff]; }; EUfootball = derive2 { name="EUfootball"; version="0.0.1"; sha256="0h36cqi752zs32gs55rdniabldr8jph7gc1y2yb9983cl4mfrjv0"; depends=[]; }; @@ -1401,7 +1406,7 @@ in with self; { EXRQ = derive2 { name="EXRQ"; version="1.0"; sha256="1iqsr52sl2j5q03122a7rsp6n6a2bkysk2r908c89l36gk4sj2i5"; depends=[mnormt quantreg]; }; EZtune = derive2 { name="EZtune"; version="3.1.1"; sha256="0scslbgbbwma7sr0w9awg58ly5jwn877xsk6q1gq0ss3rd17pmfk"; depends=[ada BiocStyle e1071 GA gbm glmnet optimx ROCR rpart]; }; Eagle = derive2 { name="Eagle"; version="2.5"; sha256="18y0hc5461gh7kp095xfpwpfnl7k3v545r8w6nrhabrhwsflrrij"; depends=[data_table fontawesome ggplot2 ggthemes mmap plotly R_utils Rcpp RcppEigen shiny shinyBS shinyFiles shinyjs shinythemes]; }; - Ease = derive2 { name="Ease"; version="0.1.1"; sha256="1aydwpb5wl3jvqkgf9gp4cc72rmh6206ci6p4v77jwbyzak53ldc"; depends=[Rcpp RcppProgress]; }; + Ease = derive2 { name="Ease"; version="0.1.2"; sha256="0llx3pdpzjsw94nk62h6cif4gn97rhbq38vsqpdarx201q8qq2qx"; depends=[Rcpp RcppProgress]; }; EasyABC = derive2 { name="EasyABC"; version="1.5"; sha256="17qv6y8sf2iwwqcv5wfg6sii259gv5jyr72dnfpir2bw78wb3mqx"; depends=[abc lhs MASS mnormt pls tensorA]; }; EasyDescribe = derive2 { name="EasyDescribe"; version="0.1.1"; sha256="15g37m28l40w71bvj02cbhfc6x77bjvr8mjr89iipdqzndp23g1i"; depends=[CATT fitdistrplus FSA gmodels multiCA nortest psych rcompanion]; }; EasyMx = derive2 { name="EasyMx"; version="0.2-12"; sha256="00wj08nwv5zi5d4a1fss40f4cms4svam1hmmxvh60hvc55ygsc3z"; depends=[OpenMx]; }; @@ -1409,6 +1414,7 @@ in with self; { Ecdat = derive2 { name="Ecdat"; version="0.4-2"; sha256="1vyc4ynkd65mng2x8wvzn47crsvaqfz97n89jxn12xv13bpsbs7c"; depends=[Ecfun]; }; Ecfun = derive2 { name="Ecfun"; version="0.3-2"; sha256="1q0mx70hy18rabpabxghaixkb3r1432cxln844cac4dqxhvzcqgy"; depends=[BMA fda jpeg MASS mvtnorm rvest stringi TeachingDemos tis xml2]; }; EcoDiet = derive2 { name="EcoDiet"; version="1.0.1"; sha256="1yc120fs4bprn9ifh59n6y671wa5vi7r6k0ldp9fzy5asax00ds8"; depends=[coda ggplot2 rjags]; }; + EcoEnsemble = derive2 { name="EcoEnsemble"; version="1.0.1"; sha256="1b0zm8d4dc2drdy08s5gskjdjl0i91ng78xk6aga17bjgm5hjqsi"; depends=[BH cowplot dplyr ggplot2 matrixcalc Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders tibble]; }; EcoIndR = derive2 { name="EcoIndR"; version="1.8"; sha256="008wgp9zc8a8knz9ighgavrdm0yf37m5jahnq5kndjhld0359z6h"; depends=[rgeos]; }; EcoNetGen = derive2 { name="EcoNetGen"; version="0.2.3"; sha256="05j8m9vzkwlsw1h69s5myhbg85vyhqdxcl9r5mdwsrk9f58wajmz"; depends=[ggplot2 igraph]; }; EcoTroph = derive2 { name="EcoTroph"; version="1.6.1"; sha256="0nrq6n7amz8l6rk0wfyrih7rkic96yc02rpk4szis81v7yvm7346"; depends=[XML]; }; @@ -1433,7 +1439,7 @@ in with self; { EloSteepness = derive2 { name="EloSteepness"; version="0.4.6"; sha256="09rdiy50zxj61vs1pq522l36g0zkhvrdf6kgb1r11jjryxrik8zq"; depends=[aniDom BH EloRating Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; ElstonStewart = derive2 { name="ElstonStewart"; version="1.2"; sha256="1lsapsz8w8srdqdkxvlg5nsn157wbihxjgdaf53r5iaxzcljkzxc"; depends=[digest kinship2]; }; EmbedSOM = derive2 { name="EmbedSOM"; version="2.1.2"; sha256="0k4hja5y7qd0n3gfaxzxrz4wpxc1w9d4d4xbb63rq2nfk3lj7a42"; depends=[FNN ggplot2 igraph Matrix Rtsne umap uwot]; }; - EmiR = derive2 { name="EmiR"; version="1.0.3"; sha256="0cf05k8iaa18j4hqyz713ibaw03h9pcf440n0yc6l256iq5xwsrx"; depends=[data_table dplyr gganimate ggplot2 mathjaxr plot3D Rcpp RcppProgress Rdpack testthat tibble tictoc tidyr]; }; + EmiR = derive2 { name="EmiR"; version="1.0.4"; sha256="1xhsf9n5af6z7v62vpnqjlp20s6fp7jf1wmgxgv77hxm4g5cm0q7"; depends=[data_table dplyr gganimate ggplot2 mathjaxr plot3D Rcpp RcppProgress Rdpack tibble tictoc tidyr]; }; EmiStatR = derive2 { name="EmiStatR"; version="1.2.3.0"; sha256="1cwzzkynhnpjd1slnifdmkrshfpv99ryilxj27f98kwgbnb6i81a"; depends=[doParallel foreach lattice xts zoo]; }; EmissV = derive2 { name="EmissV"; version="0.665.6.3"; sha256="1cazd2njbiacwwkxrs0qvy6p533wal18s9cjvavxcx0c2607r725"; depends=[data_table ncdf4 raster sf sp units]; }; EmpiricalCalibration = derive2 { name="EmpiricalCalibration"; version="3.1.1"; sha256="11kam8scb5hbp6bfk41xwjfmrwnvwaba2xksjsw1rdlrfbljs8p1"; depends=[ggplot2 gridExtra Rcpp rlang]; }; @@ -1461,7 +1467,7 @@ in with self; { EpiEstim = derive2 { name="EpiEstim"; version="2.2-4"; sha256="12zv1mlb0gqsvff1s0fvqgxqk42c7y9gz3h94mjmf1wbmhsjcqnf"; depends=[coarseDataTools coda fitdistrplus ggplot2 gridExtra incidence reshape2 scales]; }; EpiILM = derive2 { name="EpiILM"; version="1.5.2"; sha256="0drs4qywx9axs7k5qk7sp5r3g8pykn4lqqbm0hxyl24r6b5l3d6b"; depends=[adaptMCMC coda LaplacesDemon]; }; EpiILMCT = derive2 { name="EpiILMCT"; version="1.1.7"; sha256="1yjcjxf5m1qbb6p09g34wkr4q13g65ly11kxh95r22cdl85jmlq3"; depends=[coda igraph]; }; - EpiInvert = derive2 { name="EpiInvert"; version="0.2.1"; sha256="0ghfs8g4fj4yr8scmvnqbc7j1pj5yjwlvqb2xbkisvvli82qhrk3"; depends=[Rcpp]; }; + EpiInvert = derive2 { name="EpiInvert"; version="0.3.0"; sha256="03xvcrh2gf5rnisq0kza5ny066asjq2igk53a423xq7i09xlr1zg"; depends=[Rcpp]; }; EpiLPS = derive2 { name="EpiLPS"; version="1.0.6"; sha256="0453vi4h988syd9jab0xmy19vl2m8z30jcymc1a1hcfpnw88hl8z"; depends=[coda crayon EpiEstim ggplot2 gridExtra MASS progress Rcpp RcppArmadillo]; }; EpiModel = derive2 { name="EpiModel"; version="2.3.1"; sha256="1fwk6wkqy2z3cv0jhi6mz077qjwlcqhd57lpiv6i6iajizcf4bas"; depends=[ape coda deSolve doParallel dplyr ergm foreach ggplot2 lazyeval network networkDynamic RColorBrewer Rcpp rlang statnet_common tergm tibble]; }; EpiReport = derive2 { name="EpiReport"; version="1.0.2"; sha256="1dh9rjdjgmwzvfslzgnmd37ipj7ydbn4pnngz4sw7nknqy7r4dpx"; depends=[dplyr flextable ggplot2 officer png tidyr tidyselect zoo]; }; @@ -1476,7 +1482,7 @@ in with self; { EstMix = derive2 { name="EstMix"; version="1.0.1"; sha256="13zwhxm0qm83c8k5k4slvq2snkmbq1zz3i5cqvxxwhvkb4b8aja4"; depends=[PSCBS Rcpp RcppArmadillo]; }; EstimDiagnostics = derive2 { name="EstimDiagnostics"; version="0.0.3"; sha256="036kz4zdrgqab2mbzxmbknr9314ap5b2dp75syqhg2mmzw3zf3li"; depends=[foreach ggplot2 goftest reshape2 rlang testthat]; }; EstimateGroupNetwork = derive2 { name="EstimateGroupNetwork"; version="0.3.1"; sha256="06ihyiq9dw7yg8qpq3yckpd0jk4gjajgvavbj302sj0qssrxgyzh"; depends=[dplyr ggplot2 igraph qgraph]; }; - EstimationTools = derive2 { name="EstimationTools"; version="2.1.0"; sha256="1dpn4jb746ax3s7p7hkrk85hkxjayxp641vxbfp155v0m2gr8ar2"; depends=[autoimage BBmisc boot DEoptim matrixStats numDeriv Rdpack stringr survival]; }; + EstimationTools = derive2 { name="EstimationTools"; version="4.0.0"; sha256="1hwlrsxl42n4i25f1izhccj755aydl2r98w1jn12z9a62wk9nnzy"; depends=[autoimage BBmisc boot DEoptim GA gaussquad numDeriv Rdpack stringr survival]; }; EthSEQ = derive2 { name="EthSEQ"; version="3.0.0"; sha256="1gmyf0qsixc8nsl9zzk7rb230zjv0p9vvp2zhr5q3xsic594mf1v"; depends=[data_table gdsfmt geometry MASS plot3D Rcpp SNPRelate]; }; EuclideanSD = derive2 { name="EuclideanSD"; version="0.1.0"; sha256="1w5s1zkb81v150nvaygvyla2x0vh4c99vd5jw53jcq68sv9hby3i"; depends=[shiny]; }; EurosarcBayes = derive2 { name="EurosarcBayes"; version="1.1"; sha256="12311s6ibw9q6kykhh689r93r7mwjhwrhkzdpc75grvw6ilgjmpm"; depends=[clinfun data_table plyr shiny VGAM]; }; @@ -1492,7 +1498,7 @@ in with self; { EventWinRatios = derive2 { name="EventWinRatios"; version="1.0.0"; sha256="1hsq4g7hh71lzxzkmhm15mk3xpxaq75rqhgslf4qif6x7pm0p859"; depends=[]; }; EvidenceSynthesis = derive2 { name="EvidenceSynthesis"; version="0.3.0"; sha256="1qpvbs8a1xbm6vim82xxarhmbj999f4wangav5hcnmbwbrvxihxx"; depends=[BeastJar coda Cyclops EmpiricalCalibration ggplot2 gridExtra HDInterval meta rJava rlang survival]; }; EviewsR = derive2 { name="EviewsR"; version="0.1.5"; sha256="0dybfkpg5zr6bh84dh7v4vyxk4xv09v9hv8ijxj0h41mi5zpqap9"; depends=[knitr magrittr xts zoo]; }; - EvoPhylo = derive2 { name="EvoPhylo"; version="0.3"; sha256="102f45wgyxrkz4snmv03z5xjli92z54l9mas38ndpg0fs8czqznv"; depends=[ape cluster deeptime dplyr ggplot2 ggrepel ggtree patchwork Rtsne treeio unglue]; }; + EvoPhylo = derive2 { name="EvoPhylo"; version="0.3.2"; sha256="1jgvvi355dxrjqniwcga7gzfj0jw3hgwbii2cv055rq9z5f442mr"; depends=[ape cluster deeptime devtools dplyr ggplot2 ggrepel ggtree patchwork Rtsne treeio unglue]; }; EvolutionaryGames = derive2 { name="EvolutionaryGames"; version="0.1.2"; sha256="0aaqd4q8imm2wgkgdpwwdl6nxgr3apgb3l24f2lwxgv2y045309d"; depends=[deSolve geometry ggplot2 interp MASS reshape2]; }; Evomorph = derive2 { name="Evomorph"; version="0.9"; sha256="1br2fyggwz2mxpic8sk384xq1lpbpv0j5gf6xyzhkn2n7kfpf6d5"; depends=[geomorph ggplot2 reshape2 stringr]; }; EwR = derive2 { name="EwR"; version="1.4"; sha256="1i0cwyylr1lqilykn1q2y1ad2gawfqkw9c51g04yn061c623pkam"; depends=[]; }; @@ -1508,12 +1514,13 @@ in with self; { ExcessMass = derive2 { name="ExcessMass"; version="1.0.1"; sha256="1ycvv3bm9qq11imc09jhwhb1vb2cbngckmb3ibj4hfl697gaby5v"; depends=[]; }; ExclusionTable = derive2 { name="ExclusionTable"; version="1.0.0"; sha256="1adanj3rnk9vhz89rgl25w10ghm2xn1rl99ilnmpkq5jdblcifkx"; depends=[dplyr magrittr]; }; ExhaustiveSearch = derive2 { name="ExhaustiveSearch"; version="1.0.1"; sha256="1wb3bf1ilml5cilm740rh8ngiybxhxg6h6nzh1rlqd6wgfp17mzh"; depends=[Rcpp RcppArmadillo]; }; + ExomeDepth = derive2 { name="ExomeDepth"; version="1.1.16"; sha256="1r7b9h5i562fa67ghisyw6ciwawfyjwrpn95kdws4dd4gqgbb9kv"; depends=[aod Biostrings dplyr GenomicAlignments GenomicRanges IRanges magrittr Rsamtools VGAM]; }; ExpAnalysis3d = derive2 { name="ExpAnalysis3d"; version="0.1.1"; sha256="0gch9q19l3lqb35vfq1kcrga9jzqvrxr7d6x9lk7nzb78y735wa2"; depends=[crayon fields magrittr plotly]; }; ExpDE = derive2 { name="ExpDE"; version="0.1.4"; sha256="0yjsap92dd1sb23fhw69i0ddk3lyj5f4kwp9rvz4k0vxry10hx7g"; depends=[assertthat]; }; ExpDes = derive2 { name="ExpDes"; version="1.2.2"; sha256="145x7zzhgs7rqbamsfwcxlhppxmy9l6v4a1wximac8qgp7i0wdpi"; depends=[stargazer]; }; ExpDes_pt = derive2 { name="ExpDes.pt"; version="1.2.2"; sha256="05s7j3afs97x0k4w9rsjic1519ilzri250x5rl6l6smqivjaplci"; depends=[stargazer]; }; ExpGenetic = derive2 { name="ExpGenetic"; version="0.1.0"; sha256="096cxaqbc9y0bnj70fxk94585c880020pqqcx0dwwj839qkry4ha"; depends=[DESeq2 futile_logger ggplot2 ggsci plyr VennDiagram]; }; - ExpImage = derive2 { name="ExpImage"; version="0.6.0"; sha256="1m6s5prwas82s1ypylwcpmfqkrjskb7ms1592bj4gvvhgmlqc9h3"; depends=[crayon doParallel foreach ggplot2 progress raster rstudioapi schemr]; }; + ExpImage = derive2 { name="ExpImage"; version="0.7.0"; sha256="0wzq10qv6m3r65g8gzv4ikpwmymmf5rspba5slrqrclmpl1wgvn5"; depends=[crayon doParallel foreach ggplot2 progress raster rstudioapi schemr]; }; ExpRep = derive2 { name="ExpRep"; version="1.0"; sha256="0spv3wd9c8sr338n5kdzrs28yh7s90fl70wsdnkibmlxhnh3ay3g"; depends=[]; }; ExpertChoice = derive2 { name="ExpertChoice"; version="0.2.0"; sha256="1pd4v240ywc4wzh249axxb4kz5dccizc08jdjnaygz35hjdg5hvj"; depends=[DoE_base dplyr far purrr rlist]; }; ExplainPrediction = derive2 { name="ExplainPrediction"; version="1.3.0"; sha256="14m3b9fsrpfpr8avsnhl8b3bzk2xlhwgkwag5iq8bj7bzvv4yck1"; depends=[CORElearn semiArtificial]; }; @@ -1528,7 +1535,7 @@ in with self; { FABInference = derive2 { name="FABInference"; version="0.1"; sha256="0d11vxxa0mry735n7an8n97wmxyffsj4hirxlysljs941zhkhhw4"; depends=[MASS]; }; FACTMLE = derive2 { name="FACTMLE"; version="1.1"; sha256="0qz2i0hnn84bpps1h8jmfkgp5p59axr0wayj9dvl839radrvpqvy"; depends=[rARPACK]; }; FADA = derive2 { name="FADA"; version="1.3.5"; sha256="0srv3rghbkgyxbcjc1v68c5qgcir1d618skpc8imfmdaz9pnxchn"; depends=[corpcor crossval elasticnet glmnet MASS matrixStats mnormt sda sparseLDA]; }; - FADPclust = derive2 { name="FADPclust"; version="0.1.0"; sha256="0b4b77wi25ldrq4w2vqhh3g1sm89ad0ghajfmfaqp84v30d8hcpw"; depends=[cluster fda fda_usc funData MFPCA]; }; + FADPclust = derive2 { name="FADPclust"; version="1.1.1"; sha256="111lpq5hdrpyj8wdscjswk5p4akxhj3jbj5xk6ias2s5gfprla14"; depends=[cluster fda fda_usc fpc funData MFPCA]; }; FAIRmaterials = derive2 { name="FAIRmaterials"; version="0.0.2"; sha256="169hcwjm0plhkqbhz3b5cqgc2nnkibn94cimrs39sn9z62radb7x"; depends=[dplyr glue stringr]; }; FAMT = derive2 { name="FAMT"; version="2.6"; sha256="0msb02fz8blm6wgg31xwwxv8phg35w7844q1xz4v307ixz2qgs1h"; depends=[impute mnormt]; }; FAMetA = derive2 { name="FAMetA"; version="0.1.4"; sha256="1c5y3x06ln1w8nkwmnc13hn8jhj0vbmwbx70kylcf93a1fq5rkbz"; depends=[accucor gplots gtools knitr LipidMS minpack_lm plyr rmarkdown scales tidyr]; }; @@ -1559,17 +1566,17 @@ in with self; { FER = derive2 { name="FER"; version="0.94"; sha256="0319dz0qvk8s9cfngqas3j212bw0f4rzw3gqcd7r7sl0249dla7p"; depends=[statmod]; }; FESta = derive2 { name="FESta"; version="1.0.0"; sha256="1kf5iqw8x8079gjaxicrgax5l798l8hxcc5y83l5pqh0ync5bxm6"; depends=[]; }; FEprovideR = derive2 { name="FEprovideR"; version="1.1"; sha256="02hfdk9qhaq4y19p700w2i7qsdp4z2kyww0pr0pijfivkqks0vpi"; depends=[ggplot2 Matrix poibin]; }; - FFD = derive2 { name="FFD"; version="1.0-8"; sha256="0kb654pvb0z0zpf88yc3dkd8n3qfiqjhdmv9rk5y06f2hjydn0i3"; depends=[R2HTML]; }; + FFD = derive2 { name="FFD"; version="1.0-9"; sha256="1478sxfz4cv43nmvhg0d0w82kmyr4rfhhrrlrq4aanbxnriggkxr"; depends=[R2HTML]; }; FFTrees = derive2 { name="FFTrees"; version="1.7.5"; sha256="0aqi8r5nrsvlzlw9aiqmqk8r0h5nng3cj57h23a3iqgzv7nwb443"; depends=[caret crayon dplyr e1071 knitr magrittr progress randomForest rpart scales stringr testthat tibble tidyselect]; }; - FFdownload = derive2 { name="FFdownload"; version="1.0.6"; sha256="1n5mmx7mgdfbxqqgv1hv3l9z7vwykp17r1ca9l7d8jcwslygbbyz"; depends=[plyr rvest xml2 xts zoo]; }; + FFdownload = derive2 { name="FFdownload"; version="1.1.0"; sha256="050mn48q36585s2xf0dbsb385rla1jnnlkppnagrijdpmkvjzfy9"; depends=[plyr rvest timetk xml2 xts zoo]; }; FGLMtrunc = derive2 { name="FGLMtrunc"; version="0.1.0"; sha256="15pj2dmgbjbx4xi585rqggnp05xzpg9pn2iy76ibgkdvjqknkwii"; depends=[foreach glmnet Rcpp RcppArmadillo splines2]; }; FGSG = derive2 { name="FGSG"; version="1.0.2"; sha256="1r3sjhzf9gcnbcx6rqr1s555z8lcwm3fxl096md2jji336ijlk79"; depends=[]; }; FGalgorithm = derive2 { name="FGalgorithm"; version="1.0"; sha256="1dq6yyb3l6c9fzvk9gs6pb240xb5hvc6fh8p3qd3c91b3m289mcc"; depends=[]; }; FHDI = derive2 { name="FHDI"; version="1.4.1"; sha256="1n1rbrqdphp0prmkili6rnpxwdb7fgwsgncllr6yxlrkr5rb76pm"; depends=[]; }; FHtest = derive2 { name="FHtest"; version="1.5"; sha256="00mql2r4f5hxhdqf27q3x9s5rz2zzakx2myym97b1w1s7c5znl4q"; depends=[interval KMsurv MASS perm survival]; }; FI = derive2 { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; - FIESTA = derive2 { name="FIESTA"; version="3.4.2"; sha256="1wcd18y9az52grc95s2g88z7qwf7q5fnzrxn3znfcnj6g44fybll"; depends=[data_table DBI FIESTAutils largeList rgdal RSQLite sf sqldf]; }; - FIESTAutils = derive2 { name="FIESTAutils"; version="1.1.3"; sha256="0c3b17i01cikryj3yiixjd589jsz9i5f7fn2mvknv9rwls3wpjri"; depends=[data_table DBI hbsae JoSAE largeList mase nlme RColorBrewer Rcpp rgdal RPostgreSQL RSQLite sae sf sp sqldf units xml2]; }; + FIESTA = derive2 { name="FIESTA"; version="3.5.0"; sha256="1jg8s08iz6l3pggybdsrzi91r5nxm8yvy1cabrxl0s861h98r3m3"; depends=[data_table DBI FIESTAutils largeList rgdal RSQLite sf sqldf]; }; + FIESTAutils = derive2 { name="FIESTAutils"; version="1.1.4"; sha256="0zciqzp7cwgz5awxnfhdi9d8akaylvicwnnwkpn3lv4135rvkwhi"; depends=[data_table DBI hbsae JoSAE largeList mase nlme RColorBrewer Rcpp rgdal RPostgreSQL RSQLite sae sf sp sqldf units xml2]; }; FILEST = derive2 { name="FILEST"; version="1.1.2"; sha256="0x95in9yad93j8kbxjykz04x756i1c1cq854c220cc0l3rm3npnl"; depends=[KRIS rARPACK]; }; FIT = derive2 { name="FIT"; version="0.0.6"; sha256="1nkjms9cvigc9sjha1krzhd3nmwsfh8pi0f1plf5k8zpb773zzb2"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-6"; sha256="1qch6z9r8h95jijjdwsi81majgacl42ryzlkn0m1wifkly9mjjrb"; depends=[]; }; @@ -1591,7 +1598,6 @@ in with self; { FMsmsnReg = derive2 { name="FMsmsnReg"; version="1.0"; sha256="0d58n7lz8d6xgzvyznmhw1byshyiiwk8dc462qr18cl51p0lqnkv"; depends=[mvtnorm]; }; FNN = derive2 { name="FNN"; version="1.1.3.1"; sha256="0nmynpiy3d2dnd5ngjf4m79jy02byhk43gj0xny9a6j8243f5c2j"; depends=[]; }; FOCI = derive2 { name="FOCI"; version="0.1.3"; sha256="0iax5569a0v18j2l52mw26yimx11fqqbxj5q7jgba9jf7ylp410w"; depends=[data_table gmp proxy RANN]; }; - FORTLS = derive2 { name="FORTLS"; version="1.1.0"; sha256="08g674ig8fn2mlwqrhd5lkvy64n9jqvla7nflswpbp4vhjgcmy9k"; depends=[dbscan Distance htmlwidgets lidR moments plotly progress raster Rcpp RcppEigen RCSF scales sf sp tidyr VoxR vroom]; }; FPCA2D = derive2 { name="FPCA2D"; version="1.0"; sha256="18bb90ppd9gd8pg9jxfyfkmlsaqk8w25fgaj9fk18ybm2nhsxqm6"; depends=[corpcor]; }; FPCA3D = derive2 { name="FPCA3D"; version="1.0"; sha256="1hrk9caad2s76dx59clxhia45a85khk1y2ii7955f336x55q34a5"; depends=[]; }; FPDclustering = derive2 { name="FPDclustering"; version="2.2"; sha256="0h9yfiyf8xhvdyzjwgh9s8immnfx6yidz4irn8nyp14ifhq1ad61"; depends=[cluster ExPosition GGally ggplot2 klaR MASS mvtnorm rootSolve ThreeWay]; }; @@ -1607,7 +1613,7 @@ in with self; { FRI = derive2 { name="FRI"; version="1.0"; sha256="17ddbr0hndpr5627n67467787rq8hidi1jn1c3xf7f7qz800jjf5"; depends=[forcats ggplot2 neuralnet RSNNS]; }; FRK = derive2 { name="FRK"; version="2.1.0"; sha256="0lsqd043xyy951yqms5393kshnjcrjq2gckkjyj10q8lp75iyw3m"; depends=[digest dplyr ggplot2 ggpubr Hmisc Matrix plyr Rcpp RcppEigen reshape2 scales sp spacetime sparseinv statmod TMB]; }; FSA = derive2 { name="FSA"; version="0.9.3"; sha256="10ax191r71gny976hgxgs0gz2548sjjaq3hqy7xkzbj2mcmjq41w"; depends=[car dunn_test lmtest plotrix withr]; }; - FSAdata = derive2 { name="FSAdata"; version="0.3.9"; sha256="1ycllz83lmbd93fdrkj0sjg8bygivp60fv768kk0diamjb16xlmq"; depends=[]; }; + FSAdata = derive2 { name="FSAdata"; version="0.4.0"; sha256="0wqviw5achsl9q7v8z8zzbnhq9gryfj793hi61js2z30m5dgjvm7"; depends=[]; }; FSDAM = derive2 { name="FSDAM"; version="2020.11-18"; sha256="09l7zvmbvmbcr5pxizdhs5fn79r6cl4ic0hsz2bazdymsqv3s3nm"; depends=[kyotil reticulate]; }; FSInteract = derive2 { name="FSInteract"; version="0.1.2"; sha256="1aci1398aaz0nrl5jy6yh7xik355wf7pwngrsak4qsi94vdj05iy"; depends=[Matrix Rcpp]; }; FSK2R = derive2 { name="FSK2R"; version="0.1.3"; sha256="0hsrg49q42by4i3dywi59wwy5h56fnfdr10s6rk1y9dyliksmj43"; depends=[dplyr purrr R_utils readtext readxl rjson rlang shiny tibble tidyr XML xml2 zip]; }; @@ -1625,11 +1631,12 @@ in with self; { FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.8"; sha256="1m2005yywdh9ir61sdh10ssp1y26d9xgx9rivvilbk9grc9qyjzg"; depends=[FactoMineR ggplot2 rmarkdown]; }; FactoMineR = derive2 { name="FactoMineR"; version="2.6"; sha256="0xcg4vjs5v9k28hhxhkfkks7nvpxpp2cvim00kh67f4pq041c9l1"; depends=[car cluster DT ellipse emmeans flashClust ggplot2 ggrepel lattice leaps MASS multcompView scatterplot3d]; }; FactorAssumptions = derive2 { name="FactorAssumptions"; version="2.0.1"; sha256="0d7dh67r8s0v952palhx9h6bhhlxw9xcjbj7dxsp2hdhwap72s2y"; depends=[MASS psych]; }; - FactorCopula = derive2 { name="FactorCopula"; version="0.8.1"; sha256="1hdmmm9vl1kyg4i4gchl837q6lfga5qfay6wv5z0xn84rmifqnpr"; depends=[abind matlab polycor statmod VineCopula]; }; + FactorCopula = derive2 { name="FactorCopula"; version="0.9.2"; sha256="129ik9fxjhkb4z94nv8xp8qizbypx2v0kbmfvqy0ljifrskbga75"; depends=[abind igraph matlab polycor statmod VineCopula]; }; FactorsR = derive2 { name="FactorsR"; version="1.5"; sha256="1rla44g75hrqalrblr1yaawmyixmivlacn50marqgd9fjh8blgcd"; depends=[]; }; Factoshiny = derive2 { name="Factoshiny"; version="2.4"; sha256="0szdpdghaqrfjdx3c9klgww8i09dh69500sls2lyjz6c8gi80vcx"; depends=[colourpicker DT FactoInvestigate FactoMineR ggplot2 ggrepel missMDA shiny shinydashboard shinyjqui]; }; Fahrmeir = derive2 { name="Fahrmeir"; version="2016.5.31"; sha256="16fbc1zb9x9p04bl7y5nd375pha6bd3hfqqchlk1bqxrj4879y5g"; depends=[]; }; FairMclus = derive2 { name="FairMclus"; version="2.2.1"; sha256="0mhccn6yyf35qb856psh3dpiwdf24l3w2lqr643lkn38lhbmyvn8"; depends=[cluster data_table doParallel dplyr foreach irr magrittr rlist tidyr]; }; + FamEvent = derive2 { name="FamEvent"; version="3.0"; sha256="1f2cfbd799gkva0jyf7x6x37x95nlg1zv85h85irkwh0kfwk55gh"; depends=[cmprsk eha kinship2 MASS pracma survival truncnorm]; }; Families = derive2 { name="Families"; version="1.0.1"; sha256="1ravgcn3jkhfx6q4wqxld2mdmibdm07ywzy3za3hws6a04zgsbvn"; depends=[msm reshape]; }; FamilyRank = derive2 { name="FamilyRank"; version="1.0"; sha256="0v1b3a6rxbbl7xdy977j02x1ni66879x98vg6ngbaqvh7v9vl82x"; depends=[plyr Rcpp RcppArmadillo]; }; FarmSelect = derive2 { name="FarmSelect"; version="1.0.2"; sha256="174rzv9k0hdcfdkv7bisy70rip2iy0bnj3qa54i00wqwjdglgjdn"; depends=[fBasics ncvreg Rcpp RcppArmadillo]; }; @@ -1650,10 +1657,10 @@ in with self; { FateID = derive2 { name="FateID"; version="0.2.2"; sha256="0sgvaqhqkmmkcsl53bm1jlfpzrvzfb5cz8k513nizfsi638vydlm"; depends=[locfit matrixStats pheatmap princurve randomForest RColorBrewer Rtsne som umap]; }; FaultTree = derive2 { name="FaultTree"; version="0.99.5"; sha256="1sg5bidp1wv02xf828g97syh5w6ik5z8ssl7a0hd3ikvh80k4yll"; depends=[Rcpp RcppArmadillo]; }; FeaLect = derive2 { name="FeaLect"; version="1.20"; sha256="1dfi0v313x4a4ck98zlk6yr3nfjrdwr5649x9dx3i7yfkypk2k5c"; depends=[lars rms]; }; - FeatureHashing = derive2 { name="FeatureHashing"; version="0.9.1.4"; sha256="00yrji3grqgzg8c1hwqq5kb9xgqlnzwymy0b38cwixadc5w5lq8m"; depends=[BH digest magrittr Matrix Rcpp]; }; + FeatureHashing = derive2 { name="FeatureHashing"; version="0.9.1.5"; sha256="1hfa2p78a7hhn5p0xhsha6pl2aisvkjd791j61s73w99vbysmmpl"; depends=[BH digest magrittr Matrix Rcpp]; }; FeatureImpCluster = derive2 { name="FeatureImpCluster"; version="0.1.5"; sha256="1ifxw6rd870g258fkyyy3mhghxm7486nvgnp3lh5ih2i1v34dgig"; depends=[data_table ggplot2]; }; FeatureTerminatoR = derive2 { name="FeatureTerminatoR"; version="1.0.0"; sha256="036ip8jm4d5ybyqmvrnjqp4hl8gsmd346737ghipnmmyaml9xfs5"; depends=[caret dplyr e1071 ggplot2 lattice randomForest tibble]; }; - FedData = derive2 { name="FedData"; version="3.0.0"; sha256="0qvjm909cj7l2v6rwvvx1kbv2rmca30dahkmsx5w664cqdfdbzgg"; depends=[curl data_table dplyr httr igraph jsonlite lifecycle lubridate magrittr progress purrr raster readr sf sp stringr terra tibble tidyr xml2]; }; + FedData = derive2 { name="FedData"; version="3.0.1"; sha256="1k02icjqghv2hklhqjn63l8phmaxj6vclqcrsm35aa4clax8hhr2"; depends=[curl data_table dplyr httr igraph jsonlite lifecycle lubridate magrittr progress purrr raster readr sf sp stringr terra tibble tidyr xml2]; }; FeedbackTS = derive2 { name="FeedbackTS"; version="1.5"; sha256="120labhmisw1x1bq8c4bl6l14vayvb9xcm6jsj1awacypgrr2ar2"; depends=[automap gstat mapdata maps proj4 sp]; }; FertBoot = derive2 { name="FertBoot"; version="0.5.0"; sha256="168xfxpb43brfnp6c6b4chhpzb9z0aiqa6fawc8m09an5ggh05jp"; depends=[nls_multstart simpleboot]; }; Fgmutils = derive2 { name="Fgmutils"; version="0.9.5"; sha256="05n8lvx3cs1ckliaj7ni2rbfcrdl7d0pzf9bkwlyd1779h684cxz"; depends=[data_table devEMF ggplot2 gridExtra plyr png sqldf stringr]; }; @@ -1700,7 +1707,6 @@ in with self; { ForecastTB = derive2 { name="ForecastTB"; version="1.0.1"; sha256="1wqgw4i65ajwj8la8mgv2qqm4ydgk90i6chdkd8h33rlwh8yddc6"; depends=[circlize decomposedPSF forecast ggplot2 gridExtra imputeTestbench PSF RColorBrewer reshape2]; }; ForestDisc = derive2 { name="ForestDisc"; version="0.1.0"; sha256="1mzlrqjxsja51yyxckj4ym1vpfpq30vlhvs8clrg8jv7kz86hdwk"; depends=[moments nloptr randomForest]; }; ForestFit = derive2 { name="ForestFit"; version="1.2.3"; sha256="02qhfp08jcylzjwvdr47gv37rbj8bw6nwlx45ax67429f2g971d2"; depends=[ars pracma]; }; - ForestGapR = derive2 { name="ForestGapR"; version="0.1.6"; sha256="1m3fn7gqwch14nilid9fmxwlm4x9qslr3czb44iwiff9i69csnvk"; depends=[igraph poweRlaw raster rgeos sp spatstat_core spatstat_geom VGAM viridis]; }; ForestTools = derive2 { name="ForestTools"; version="0.2.5"; sha256="0v6m6br54cj0a218ddgkhmqr6ldk29g03pddyqh9krihq37wnjsa"; depends=[APfun doParallel foreach imager plyr progress raster Rcpp rgeos sp]; }; Formula = derive2 { name="Formula"; version="1.2-4"; sha256="1bsw282i5m8rlirbhz7hqvf25zbxschk7yrp152whbzdnmry6w6b"; depends=[]; }; FossilSim = derive2 { name="FossilSim"; version="2.3.1"; sha256="110r1797cbzym2d96h8gchk47kaqf4h6xyma9v1g9jyxnq8zxyiw"; depends=[ape TreeSim]; }; @@ -1727,7 +1733,7 @@ in with self; { FusionLearn = derive2 { name="FusionLearn"; version="0.2.1"; sha256="09mwllnp7sdk7x97s3kv2lka6smpf54svmxw5hv6zlh1hvjnyg50"; depends=[]; }; Fuzzy_p_value = derive2 { name="Fuzzy.p.value"; version="1.1"; sha256="13h6armh9g57zqxyjqk6mq81jlfqxqrg2sb5p9rrhslka5m01zis"; depends=[FuzzyNumbers]; }; FuzzyAHP = derive2 { name="FuzzyAHP"; version="0.9.5"; sha256="02sx32vlvnr0fzw8rf0f6hiikqn7xp1ibpqzxhxwv8yij2qkiyci"; depends=[MASS]; }; - FuzzyClass = derive2 { name="FuzzyClass"; version="0.1.2"; sha256="1kp6zl90fpcjh95bxvaapnjb0k7n7zc2jv5nbqjdxaid86s4x09y"; depends=[caTools doParallel e1071 EnvStats foreach MASS Rdpack rootSolve]; }; + FuzzyClass = derive2 { name="FuzzyClass"; version="0.1.3"; sha256="0vlx0l6zlfghabikssi29n275frb3if6w0qyjldm6ypkgangnzmn"; depends=[caTools doParallel e1071 EnvStats foreach MASS purrr Rdpack rootSolve]; }; FuzzyLP = derive2 { name="FuzzyLP"; version="0.1-6"; sha256="0k1cqyswhzp31dq91xigirkqhw3imkx68n4vasyvrgq6fm97dl1n"; depends=[FuzzyNumbers ROI ROI_plugin_glpk]; }; FuzzyM = derive2 { name="FuzzyM"; version="0.1.0"; sha256="12arx4flgykdkynnj341pgpd85k7xh6491bv9v9da63w6rp0kdm6"; depends=[]; }; FuzzyMCDM = derive2 { name="FuzzyMCDM"; version="1.1"; sha256="0ss0s65mm6j0nax4mb9g668d9n9cgl0l016mc3h9hbjxfpqrbkks"; depends=[RankAggreg]; }; @@ -1735,7 +1741,7 @@ in with self; { FuzzyNumbers_Ext_2 = derive2 { name="FuzzyNumbers.Ext.2"; version="3.2"; sha256="0gldq0bg1p1vmrn35prha44d7lyymz0jzshdyp2c5rx433mny7h5"; depends=[FuzzyNumbers]; }; FuzzyQ = derive2 { name="FuzzyQ"; version="0.1.0"; sha256="1camdw7rnzf02nqjlmkr7mqpc38dafq9nw8x7pzwi1lh5xwv5dia"; depends=[cluster]; }; FuzzyR = derive2 { name="FuzzyR"; version="2.3.2"; sha256="0d0zf8diw7m10zfx0r5zg5arhf4a90sva77h6rvfywixldwrnk7s"; depends=[plyr shiny]; }; - FuzzyResampling = derive2 { name="FuzzyResampling"; version="0.4.2"; sha256="0pgfx78xyq37ffaxvyxv4fh6p3dfxkgw2xi5p35hjv1hgsmi17s8"; depends=[]; }; + FuzzyResampling = derive2 { name="FuzzyResampling"; version="0.5.0"; sha256="1cryrz18zyp5mzjixhfn4d5207csaadspp3hhbly1k5wwcf6mnyf"; depends=[]; }; FuzzySTs = derive2 { name="FuzzySTs"; version="0.2"; sha256="0zs1pyn9apysspxa0glqc96h6npmvvhiqvqpcm0brslz0b6xnilp"; depends=[FuzzyNumbers polynom]; }; FuzzyStatProb = derive2 { name="FuzzyStatProb"; version="2.0.4"; sha256="1jpqb8xczi1d4g306vrwpi02f9h59aki1pgnckvfmiclr306prpb"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; FuzzyStatTra = derive2 { name="FuzzyStatTra"; version="1.0"; sha256="1ijrlnlmq9d5ahgrpzba6kzkaq1zq59zqdgcizybsf9alsswcm00"; depends=[]; }; @@ -1745,6 +1751,7 @@ in with self; { GACFF = derive2 { name="GACFF"; version="1.0"; sha256="0lhjzb6cj8838dh4423929z7bwpa6cv3dn84rccwi3382vsq9g2c"; depends=[]; }; GAD = derive2 { name="GAD"; version="1.1.1"; sha256="0lyrw0d7i7yn1wkqlbf3rg3dnijfwsjn3kdbsg19hmvwq6qpsak2"; depends=[matrixStats R_methodsS3]; }; GADAG = derive2 { name="GADAG"; version="0.99.0"; sha256="1ycg48idrq2yrk1fxs16yl5wwg3kbfki8xppmh311rrzf75c6z4g"; depends=[igraph MASS Rcpp RcppArmadillo]; }; + GAGAs = derive2 { name="GAGAs"; version="0.5.1"; sha256="1qh5cnxjb2fjl442iva4pbln019ycv13vngvlds30ql17cnf679b"; depends=[Rcpp RcppEigen survival]; }; GAIPE = derive2 { name="GAIPE"; version="1.1"; sha256="035x5x8ig85q51bf4qgj5n5qq6clwjp4xk5bf35gswn7qxd13yls"; depends=[]; }; GALLO = derive2 { name="GALLO"; version="1.3"; sha256="0nfzm5cm93m3x0vqmjvhxznj5i913ssn9awpfvk932j829kz6zbc"; depends=[circlize data_table doParallel dplyr DT foreach ggplot2 lattice RColorBrewer rtracklayer stringr unbalhaar webshot]; }; GAMens = derive2 { name="GAMens"; version="1.2.1"; sha256="1z10wxcg277fra2lch464l0kb02lspw9qr1i2wmq11wcz0k9qnl8"; depends=[caTools gam mlbench]; }; @@ -1760,7 +1767,7 @@ in with self; { GB2group = derive2 { name="GB2group"; version="0.3.0"; sha256="1dbyc7izyggfrsq2gj7rwff5qjyy6bx6ip09xvbj73xqczv8fkcd"; depends=[GB2 ineq minpack_lm numDeriv]; }; GBJ = derive2 { name="GBJ"; version="0.5.3"; sha256="12lsddkcxz37hn2fvjq158wb1bc6b3hx6wj8q8nj21zpmyl3n2qh"; depends=[BH mvtnorm Rcpp SKAT]; }; GCD = derive2 { name="GCD"; version="4.0.7"; sha256="1259z76hajapzzq75fas2sq19r0wapn1ybghdaqdc6dksifdz6fv"; depends=[raster]; }; - GCPBayes = derive2 { name="GCPBayes"; version="3.1.0"; sha256="1239pr1i9q4sfy7az6jc8sh10xil5m2a70v9sm29ll53vsza73jj"; depends=[arm gdata invgamma MASS mvtnorm postpack Rcpp truncnorm usethis wiqid]; }; + GCPBayes = derive2 { name="GCPBayes"; version="4.0.0"; sha256="1ab0vp948dyj9b6yh5gixlqim2xklhy6gsbgi641knzc30paiwj4"; depends=[gdata invgamma MASS mvtnorm postpack truncnorm wiqid]; }; GCPM = derive2 { name="GCPM"; version="1.2.2"; sha256="0k2ng78bk3bxpj6nz80j5cvjd56zjz328ga68vyyc3hvdjgpspqj"; depends=[Rcpp RcppProgress]; }; GCSM = derive2 { name="GCSM"; version="0.1.1"; sha256="0apz1wh6nfpg2gyx12xnbdb3hjyrrpwlcrh5khn6cxhxm06q9l95"; depends=[Rcpp RcppArmadillo]; }; GCalcium = derive2 { name="GCalcium"; version="1.0.0"; sha256="0r84qmdsqsgpaqr08imh48mdvy26s2b62hi0hxxwhr9kg7qvj0rd"; depends=[caTools dplyr]; }; @@ -1771,7 +1778,7 @@ in with self; { GDINA = derive2 { name="GDINA"; version="2.9.3"; sha256="0bwg9sfsqs5nsqwhjnbb631fbhj0mx2dc4c185qkym9cjb5lfkm9"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; GDPuc = derive2 { name="GDPuc"; version="0.9.2"; sha256="13izxvkl250jw66fkwwnj3s0mgmiwkza9marrrfhwvpx6ja2w37i"; depends=[cli crayon dplyr glue lifecycle magrittr rlang tibble tidyselect withr]; }; GDSARM = derive2 { name="GDSARM"; version="0.1.1"; sha256="0id3z450prnrd6rdcv4xaizmjkdhjv8vdbpbnpniaml66kqsadvh"; depends=[lpSolve]; }; - GE = derive2 { name="GE"; version="0.3.1"; sha256="0cwbwngjs2l83a7j2acbl1h2d10vfnw2cils5m108ysx1p93kryb"; depends=[CGE data_tree DiagrammeR]; }; + GE = derive2 { name="GE"; version="0.3.2"; sha256="0fl06kdaxq39xhjb0mm19vq1kkdvl2ab7c2f08sqf2vnlxn8irrz"; depends=[CGE data_tree DiagrammeR]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.3"; sha256="1xprkpjp1pkq4ci1n32d3yy80hx3r4xf2j7f6hv7dvsn4cvdp417"; depends=[gee]; }; GEInfo = derive2 { name="GEInfo"; version="1.0"; sha256="08ha9w3c64x9ib2fbh4djbhg7y6lykibx93mbm7i3gdvpajqk0jx"; depends=[dplyr glmnet MASS pheatmap rvest]; }; @@ -1779,17 +1786,18 @@ in with self; { GENEAclassify = derive2 { name="GENEAclassify"; version="1.5.3"; sha256="0yqinjamb5qfnkyk9snyqw2kcl8120k6fcpg9y1qz14i6qzin2wq"; depends=[changepoint GENEAread MASS rpart signal]; }; GENEAread = derive2 { name="GENEAread"; version="2.0.9"; sha256="00whn2xqlcdcgmrifng04j2csxynfb1dmj9wkx981ylz13jsnwm9"; depends=[bitops mmap]; }; GENEAsphere = derive2 { name="GENEAsphere"; version="1.5.1"; sha256="1kgj7i9v2yn0b8lvvsf0nc6lg3i2syrcygwa51pcrzp57vv7hxn5"; depends=[GENEAread ggplot2 MASS misc3d rgl]; }; - GENLIB = derive2 { name="GENLIB"; version="1.1.6"; sha256="134j9v0pbljqspbic2phsxgp5y25v4k4jzjdwisxgrcrxi6hg1pn"; depends=[BH bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; }; - GENMETA = derive2 { name="GENMETA"; version="0.1"; sha256="1mxwqnbg5bvx1qg62xcd62dl81k11l64yckhl3v854asnaczq3pp"; depends=[magic MASS Matrix]; }; + GENLIB = derive2 { name="GENLIB"; version="1.1.7"; sha256="1f4ybng05dsbw6sd7s93y3b8ls0s139zhzpwajzjq4340czshkg2"; depends=[BH bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; }; + GENMETA = derive2 { name="GENMETA"; version="0.2.0"; sha256="11wlcnj919jws62ngf29gr2p0shdlm917hkz5iwfss1m8gcbfjnl"; depends=[magic MASS Matrix pracma]; }; GEOmap = derive2 { name="GEOmap"; version="2.5-0"; sha256="14qhvgh7jcrfknhihsnsvz6b7dz796v659ksqqmn6c3kva761rc2"; depends=[fields MBA RPMG splancs]; }; GESE = derive2 { name="GESE"; version="2.0.1"; sha256="0h3s2sbnv5wilr2mj6bnl2892p16pxrs341gg6jql1a540p669sk"; depends=[kinship2]; }; - GET = derive2 { name="GET"; version="0.3-1"; sha256="1m9p2r0pxa9m9f37pwg03gnaahyrfas9r8xv7bcxh7r5zb6v66yq"; depends=[cluster ggplot2 gridExtra viridisLite]; }; + GET = derive2 { name="GET"; version="0.3-2"; sha256="0n0frlr4nxl62ffh8mir2pwgkp5d1bkazsrff0v6k0amibqknlly"; depends=[cluster ggplot2 gridExtra viridisLite]; }; + GETdesigns = derive2 { name="GETdesigns"; version="1.1.0"; sha256="1rc8vcpfv240qmg3xgqx1rlygw7l3hjkh1napj3pc9j6ffpyyk2a"; depends=[]; }; GEVACO = derive2 { name="GEVACO"; version="1.0.1"; sha256="0zkan4w96g3qc1hgla90mh32b55bk58gax095p4nxrfi46f8w3rf"; depends=[nlme RLRsim]; }; GEVcdn = derive2 { name="GEVcdn"; version="1.1.6-2"; sha256="0vmm9fhyrk5m0zwy7fpq5j9zinws0gn2saf4j9plqc9gj1gphjn0"; depends=[]; }; GEint = derive2 { name="GEint"; version="1.0"; sha256="0srja3kwm4yjmh1vpzfwrx7ii4s9xj9j88pgcm299dnqxkv59y3r"; depends=[bindata geepack mvtnorm nleqslv pracma rje speedglm]; }; GFA = derive2 { name="GFA"; version="1.0.3"; sha256="10sivsqxliwcrp0ay3n2my28zki6f8vpv8i9lbld8qinx1iv2mq3"; depends=[]; }; GFD = derive2 { name="GFD"; version="0.3.3"; sha256="1d40fwk367ww544z25jwlx2kdm1gv7y6ijl8vnpi198n7k1hdgpl"; depends=[magic MASS Matrix plotrix plyr shiny shinyjs shinythemes shinyWidgets tippy]; }; - GFDsurv = derive2 { name="GFDsurv"; version="0.1.0"; sha256="1kyazvyz9rgjklh63aq70f3jsv1fpy3ws5wbg4vdah52p8fk35j9"; depends=[gridExtra magic MASS plyr shiny shinyjs shinythemes survival survminer tippy]; }; + GFDsurv = derive2 { name="GFDsurv"; version="0.1.1"; sha256="0qq66f8ddw92m9k9raid89rggla9691xi2sn1w3r7lmwqf6ajsl4"; depends=[gridExtra magic MASS plyr shiny shinyjs shinythemes survival survminer tippy]; }; GFE = derive2 { name="GFE"; version="0.1.0"; sha256="0ywrg23z13kp8ggw4wbm4jvr2rvb6kra7ma0mgfj8xzkrxs6vi6m"; depends=[data_table dplyr TeachingSampling]; }; GFGM_copula = derive2 { name="GFGM.copula"; version="1.0.4"; sha256="0cw8ih9dj86cvks0qcpffzjx8lv6qiwvk3f1wri8zashj8lk9am6"; depends=[cmprsk compound_Cox joint_Cox]; }; GFM = derive2 { name="GFM"; version="1.1.0"; sha256="02k1g2rq32ghd3yivjrfz0wjid1kbkraqrb5cmc8640lv7k8l0xr"; depends=[doSNOW MASS]; }; @@ -1797,7 +1805,7 @@ in with self; { GGClassification = derive2 { name="GGClassification"; version="0.1"; sha256="03wis5ng2mnfhp33xrag8xbmvjagzr1909a6x94wv7s2spji00rp"; depends=[Rcpp RcppEigen]; }; GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.3"; sha256="0h7irlmq283bx1hlqyv8bi228kd6xkc7sdw6nq18v3s7b0a9bhcm"; depends=[ggforce ggplot2 scales]; }; GGIR = derive2 { name="GGIR"; version="2.8-2"; sha256="1njf49ywp8j8vrk66f7q4ndd20102i3xfz843f3nakdnmvl63xkm"; depends=[ActCR data_table doParallel foreach GENEAread GGIRread ineq read_gt3x signal tuneR unisensR zoo]; }; - GGIRread = derive2 { name="GGIRread"; version="0.2.4"; sha256="0pqh7cs1zp0mdmkbbiyarjvijcgsxa0p0c0vmia2gkbb072f2ajw"; depends=[bitops matlab Rcpp tuneR]; }; + GGIRread = derive2 { name="GGIRread"; version="0.2.6"; sha256="10zgdac4vjf63s3d210v6b5lgfwj7an6xfjr4m1rfg7cm5qr2pps"; depends=[bitops matlab Rcpp tuneR]; }; GGMncv = derive2 { name="GGMncv"; version="2.1.1"; sha256="0lih9dyb5aqrawhiy2vhv63b132hhzq6zq0x6rbrhy8kbkldhigr"; depends=[GGally ggplot2 glassoFast MASS mathjaxr network numDeriv pbapply Rcpp RcppArmadillo Rdpack reshape sna]; }; GGMnonreg = derive2 { name="GGMnonreg"; version="1.0.0"; sha256="1bhqk172ddc7xq1hqj1i6q8np6jvmf2xypvd8kp3w1bcsafsbms8"; depends=[bestglm corpcor doParallel foreach GGally GGMncv ggplot2 MASS Matrix network poibin psych Rdpack sna]; }; GGMridge = derive2 { name="GGMridge"; version="1.2"; sha256="1bv6k9krkb6mx6p4kx24cgyix1jnpk0257a59i59h7chij9y7nf7"; depends=[MASS mvtnorm]; }; @@ -1840,11 +1848,12 @@ in with self; { GNE = derive2 { name="GNE"; version="0.99-4"; sha256="1ncg9yys5hr2v74h8f5mr2w0iay8zybaxj76qv2cilx8d8qzi6b4"; depends=[alabama BB nleqslv SQUAREM]; }; GNRS = derive2 { name="GNRS"; version="0.3.4"; sha256="0aq6rq5b3jq9yj8hhyxjin38f2008qsix4zm20nyhqx0k0hizql1"; depends=[httr jsonlite RCurl]; }; GNSSseg = derive2 { name="GNSSseg"; version="6.0"; sha256="1zkj98xh63wfyyygg2ahq3m54xlvi3x9sy0rhcn2dlfvbxaxfl4k"; depends=[capushe robustbase]; }; - GOCompare = derive2 { name="GOCompare"; version="1.0.1"; sha256="0ssppp61ssirkcz9wni48n9jm6yv89lzxkgb90njslhb3aa07pbh"; depends=[ape ggplot2 ggrepel igraph stringr vegan]; }; + GOCompare = derive2 { name="GOCompare"; version="1.0.2.1"; sha256="0h4235bs9aszil20bxyscxv2z96rw9gdp87va8bmvj15cg2lfvgv"; depends=[ape ggplot2 ggrepel igraph mathjaxr stringr vegan]; }; GOFShiny = derive2 { name="GOFShiny"; version="0.1.0"; sha256="04m08d9w8qqbql86c18qpnwym7agry8wspfwrnbbyp52h2pn2gxb"; depends=[rhandsontable rmarkdown shiny]; }; GORCure = derive2 { name="GORCure"; version="2.0"; sha256="1hazin0q74hf16azxa5h08kfj7g1079q77n2fn4fahpfxb8hmvwm"; depends=[ICsurv MASS pracma survival]; }; GOplot = derive2 { name="GOplot"; version="1.0.2"; sha256="1y8dv0kbzpr9za91njw0x233vx5d13vqml9hmpddcyi9s6va5nix"; depends=[ggdendro ggplot2 gridExtra RColorBrewer]; }; GOxploreR = derive2 { name="GOxploreR"; version="1.2.6"; sha256="1s2f0ns09vvk6q7fd9fgdw7mcr7qib8mvia1xp9dw4rnq0i6ca1k"; depends=[annotate biomaRt dplyr ggplot2 ggraph GO_db gontr igraph network]; }; + GPArotateDF = derive2 { name="GPArotateDF"; version="2022.12-1"; sha256="0j1hi761grjsv6bgvgjigbysk565f3kf8ynf93q7wsx1m38wv4pk"; depends=[GPArotation]; }; GPArotation = derive2 { name="GPArotation"; version="2022.10-2"; sha256="05qrwbfr19mj4f4fxnh7lwvq8ai7xiiyajwhvzsls84w7a7jvxq4"; depends=[]; }; GPBayes = derive2 { name="GPBayes"; version="0.1.0-4"; sha256="1lng6ghbwqdrir17n9x0arch55ynaw37fyj8nbppmfwn3drdndcv"; depends=[Rcpp RcppEigen RcppProgress]; }; GPCERF = derive2 { name="GPCERF"; version="0.1.0"; sha256="054hyprd1g4qlf35imw42n8hizds6qxrp3y64k38j4bh9smkv59f"; depends=[data_table ggplot2 logger MASS Matrix Rcpp RcppArmadillo rlang spatstat_geom xgboost]; }; @@ -1873,8 +1882,9 @@ in with self; { GREMLINS = derive2 { name="GREMLINS"; version="0.2.0"; sha256="0wdqikz6k5d2cxcb347lhy7rj54blgf1m4sjv64zd4nx6c4r0ai8"; depends=[aricode blockmodels igraph mclust pbmcapply R6]; }; GRIDCOPULA = derive2 { name="GRIDCOPULA"; version="1.0.0"; sha256="02xyklc8648z3c3pfd3xshlfn5wpkyglc84dqh8sbpba7017gcvr"; depends=[fields ggplot2 limSolve pracma reshape2 Rsolnp]; }; GRNNs = derive2 { name="GRNNs"; version="0.1.0"; sha256="1c36km6g4fcsvpirlh88fl3zq9pdpdyfilahfx949salj0gnqsn6"; depends=[cvTools rdist scales vegan]; }; - GROAN = derive2 { name="GROAN"; version="1.3.0"; sha256="0gkb1bg5sls2kc6qqy0nigqyk6iq3bfnmj0lf7z7f8nddd33i9ca"; depends=[plyr rrBLUP]; }; + GROAN = derive2 { name="GROAN"; version="1.3.1"; sha256="1g6n00gnz47w06wkx0sha97qxxyhc8n2y8zaagqx7krgzx7lkha3"; depends=[plyr rrBLUP]; }; GRS_test = derive2 { name="GRS.test"; version="1.2"; sha256="1g560n81kqf81n1z3s4yxl24r386q21avjknz6msqzp4xhxhr4l6"; depends=[]; }; + GRSxE = derive2 { name="GRSxE"; version="1.0.0"; sha256="1mfsfkfgz12vm99jsln8fimmy852dx20xfnj6ibqrjhjpniv8x5d"; depends=[glmnet ranger]; }; GRTo = derive2 { name="GRTo"; version="1.3"; sha256="1xkcx2agvrpfnmplgaqx70vz303v8rhwnxdyr4hmdlf4h92lbv8i"; depends=[bootstrap]; }; GSA = derive2 { name="GSA"; version="1.03.2"; sha256="1f1mrxxdbdlnibgav6nsvbpniz2x3km2svc0hf43spb4zicn0z8p"; depends=[]; }; GSA_UN = derive2 { name="GSA.UN"; version="1.0.0"; sha256="1jj9scv9x32zb24114a4sa43xvjmf3gmq8lnfablldjn7p7yx9cv"; depends=[e1071]; }; @@ -1898,8 +1908,8 @@ in with self; { GVARX = derive2 { name="GVARX"; version="1.3"; sha256="00iqwkshp1i9338x9khh8hyszad6150qb11jlvky5fm488wcw1y3"; depends=[lmtest lubridate sandwich strucchange tsDyn urca vars xts]; }; GWASExactHW = derive2 { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; }; GWASbyCluster = derive2 { name="GWASbyCluster"; version="0.1.7"; sha256="0ivlkxbh8m23vbnjfmhk0vfczd5b8lzy9w4gm1m6jpvdm40kn70x"; depends=[Biobase limma rootSolve snpStats]; }; - GWASinlps = derive2 { name="GWASinlps"; version="2.1"; sha256="1vwq1gpq76f0icpzb9l2dl1yg6akr4jcscxfxnirb0zfpnibhn9v"; depends=[fastglm horseshoe mombf Rcpp RcppArmadillo]; }; - GWASinspector = derive2 { name="GWASinspector"; version="1.5.7.2"; sha256="0n1k6x38j4sxrsh5mgbcvi4vf6g1mh5xa61k0jaf2pgy2fig5kxr"; depends=[data_table futile_logger ggplot2 gridExtra hash ini kableExtra knitr R_utils rmarkdown RSQLite]; }; + GWASinlps = derive2 { name="GWASinlps"; version="2.2"; sha256="1q5gaam554r2wxwsdgxjx6hngs2q850hbrkz8y5248i46pz16pcc"; depends=[fastglm horseshoe mombf Rcpp RcppArmadillo survival]; }; + GWASinspector = derive2 { name="GWASinspector"; version="1.6.0"; sha256="0d2r5l7934ksxjqmqa3c7vy0p81vzdqlamlrj3r26cxwpm3icyhw"; depends=[data_table futile_logger ggplot2 gridExtra hash ini kableExtra knitr openxlsx R_utils rmarkdown RSQLite]; }; GWEX = derive2 { name="GWEX"; version="1.0.2"; sha256="0iykciifbskcrx1qv4874nxli1sq6nbmlfinq4ksir3p93y7ds87"; depends=[abind doParallel EnvStats fGarch foreach lmomco MASS mvtnorm nleqslv Renext]; }; GWI = derive2 { name="GWI"; version="1.0.2"; sha256="0gwbidvdzk7b1w880baa338h7cikvlzvqmbmdxca4r83jzzwxlj1"; depends=[]; }; GWLelast = derive2 { name="GWLelast"; version="1.2.2"; sha256="1nm4w5m4ca6npmpvh9nb0cnrbzlyv95nvvhgs3pqcrw4igagm4hj"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; @@ -1914,17 +1924,19 @@ in with self; { GameTheoryAllocation = derive2 { name="GameTheoryAllocation"; version="1.0"; sha256="0733vmyr0d9scjd5ixpnggr548snd7nj70knf5hbzc59nmbc5y11"; depends=[e1071 lpSolveAPI]; }; Gammareg = derive2 { name="Gammareg"; version="3.0"; sha256="1wh5k3nazycki0h094m4d0nnign8yksgnrrnrm3yka1s7mqzv781"; depends=[]; }; GapAnalysis = derive2 { name="GapAnalysis"; version="1.0.2"; sha256="0ky1njrymh102dy7sna2cm5f5gyx4s7k77bnsdal1yndgw7ppqvx"; depends=[data_table fasterize geosphere raster rmarkdown sf sp tmap]; }; + GauPro = derive2 { name="GauPro"; version="0.2.6"; sha256="03xlfwr3wwxcbkicfnrncqnzpsmvwb98vbv3cca9rw13pp449h12"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; GaussSuppression = derive2 { name="GaussSuppression"; version="0.5.0"; sha256="1lfywz2iar2nclxkwii7d58b665szlx1xafabqcafb8accxbdmb4"; depends=[Matrix RegSDC SSBtools]; }; GaussianHMM1d = derive2 { name="GaussianHMM1d"; version="1.0.1"; sha256="1j1cwh0p7czy2l4qf6nymqcp8kkfaki0j2rj8p99nqn2vgc3vcax"; depends=[doParallel foreach]; }; GeDS = derive2 { name="GeDS"; version="0.1.3"; sha256="1ddq4hnyl3m3s4cchccxiqphi742ljcm86zqpa01a5nrjbnr87x6"; depends=[Matrix Rcpp Rmpfr]; }; GeNetIt = derive2 { name="GeNetIt"; version="0.1-4"; sha256="1z9h3prlf5r7ks0ys4wy0i5i3giaplqmngsqwxllsy70jjb9s90h"; depends=[exactextractr nlme raster rgeos sf sp spdep]; }; GenAlgo = derive2 { name="GenAlgo"; version="2.2.0"; sha256="1pihqxif2v62hwf5761fshyhigcjmlgbvp2j7immxlsysjfw5xgq"; depends=[ClassDiscovery MASS oompaBase]; }; GenBinomApps = derive2 { name="GenBinomApps"; version="1.2"; sha256="03pgzrj5d3cjhadv4f6an4vm90fj0wxcsi9lx7znrlrjp8qvyjvh"; depends=[]; }; - GenEst = derive2 { name="GenEst"; version="1.4.6"; sha256="0qvxbm8vb39p7s6ajhr9fhkxi9qjw066ghv4vx8wn72vmgs9d4ic"; depends=[corpus DT gsl gtools hellno htmltools htmlwidgets lubridate MASS matrixStats mvtnorm Rcpp shiny shinyjs survival]; }; + GenEst = derive2 { name="GenEst"; version="1.4.8"; sha256="0kz9n0af79k9f03jrmqbjbspwn87hpbf0jav3nafg8m3ynvzjb3m"; depends=[corpus DT gsl gtools hellno htmltools lubridate MASS matrixStats mvtnorm Rcpp shiny shinyjs survival]; }; GenMarkov = derive2 { name="GenMarkov"; version="0.1.0"; sha256="06bq43ry25g75qxlnrz02s393sv4r5v7m8gw0d96gpmldc76aax1"; depends=[alabama fastDummies Hmisc matrixcalc maxLik nnet]; }; GenOrd = derive2 { name="GenOrd"; version="1.4.0"; sha256="17mfrj1fwj8mri1w0bl2pw1rqriidmd67i7gpn9v56g9dzw5rzms"; depends=[MASS Matrix mvtnorm]; }; GenSA = derive2 { name="GenSA"; version="1.1.7"; sha256="03xqwxm7v7rnihx730a4p65dfwhjh4345r3d78y0qxxplk8d76cx"; depends=[]; }; GenTag = derive2 { name="GenTag"; version="1.0"; sha256="0yirl7n7p7w1dfbbr48v1151qyqm7p9m00vc6jq0s2d6bjdspin9"; depends=[]; }; + GenWin = derive2 { name="GenWin"; version="1.0"; sha256="0fy5ws481xxk16x6wj7z8mwdzy044lqkqkw36xf1yxq18yxcg9xj"; depends=[pspline]; }; GenderInfer = derive2 { name="GenderInfer"; version="0.1.0"; sha256="1bdihxxwmp8ffb5blc8hkxnxh2z72vkq1sjak25njq8b1kwnazvn"; depends=[binom ggplot2]; }; GeneCycle = derive2 { name="GeneCycle"; version="1.1.5"; sha256="08pr8xgcznm04c4lhvzv2qnzij5vj7pjzyj9pr1pqpmc977h8dvg"; depends=[fdrtool longitudinal MASS]; }; GeneF = derive2 { name="GeneF"; version="1.0.1"; sha256="04fmnlj42m9ahq1504pymhq930azr8a5lyggc3bl5awqv1agpzf6"; depends=[]; }; @@ -1932,21 +1944,19 @@ in with self; { GeneralOaxaca = derive2 { name="GeneralOaxaca"; version="1.0"; sha256="19j5c5xr6mdb6pmih94wbjas4yh0dmsqfggg8clvdxkpwk0h338v"; depends=[boot]; }; GeneralisedCovarianceMeasure = derive2 { name="GeneralisedCovarianceMeasure"; version="0.2.0"; sha256="0xgxmfcpx3mnmp5hxdy5wiihj693qlksv6jxfb9ba4dy2glzdacf"; depends=[CVST kernlab mgcv xgboost]; }; GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-4"; sha256="01gqfvmzfslhxdnigzbl3rd55hk6r0kgd8fm9xjl0kb9vmb735lm"; depends=[DistributionUtils MASS]; }; - GeneralizedUmatrix = derive2 { name="GeneralizedUmatrix"; version="1.2.4"; sha256="1hlq7q3pq7vh2jba82rwm6lrxsv8nr7xyp6fji78ar4rlcqi071i"; depends=[ggplot2 Rcpp RcppArmadillo RcppParallel]; }; + GeneralizedUmatrix = derive2 { name="GeneralizedUmatrix"; version="1.2.5"; sha256="0rdqf9idrgkl7b1pz0ys7a4j73jkz748rnk23v388vl7948zvxsa"; depends=[ggplot2 Rcpp RcppArmadillo RcppParallel]; }; GeneralizedWendland = derive2 { name="GeneralizedWendland"; version="0.5-2"; sha256="04f52ilvijjm740vciys4vhcsxj9j10p7y4pphqawh4yvdc6fanv"; depends=[BH fields Matrix optimParallel Rcpp RcppEigen spam spam64]; }; GenericML = derive2 { name="GenericML"; version="0.2.2"; sha256="1r2jl3say11by21ja7m6m55yzmgrdmp4nlanvh8h4cm8v37bzql7"; depends=[abind ggplot2 lmtest mlr3 mlr3learners sandwich splitstackshape]; }; GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; }; GenoScan = derive2 { name="GenoScan"; version="0.1"; sha256="0p98imfvvz7l94kim3pxypyjs2pbxng4a2nagbafbady82ylr2vi"; depends=[data_table MASS Matrix seqminer SKAT]; }; GenomeAdapt = derive2 { name="GenomeAdapt"; version="1.0.0"; sha256="0jsxqhx62vbsr0hcqk9wrfsg3l3wbnx64pzxx18ps366vg7fxmii"; depends=[gdsfmt qvalue robust SNPRelate]; }; GenomeAdmixR = derive2 { name="GenomeAdmixR"; version="2.1.7"; sha256="14qnabg1pj8sg2bvd3k4m467bh1q2zfjr0ljxn1ny031sqwis4cy"; depends=[ggplot2 ggridges hierfstat Rcpp RcppArmadillo RcppParallel rlang stringr tibble vcfR]; }; - GenomicMating = derive2 { name="GenomicMating"; version="2.0"; sha256="02v1pkarmardf7g8hf2n4jj4cq4707g5lcc7gnwsiyyh7pknd1y6"; depends=[dplyr emoa kohonen LowRankQP magrittr plotly qtl Rcpp RcppArmadillo scatterplot3d SOMbrero]; }; GenomicTools_fileHandler = derive2 { name="GenomicTools.fileHandler"; version="0.1.5.9"; sha256="09l87wf78bj49cdh7r3x81hn15c4pihxih8l59xxrpgdhp69268c"; depends=[data_table snpStats]; }; GeoBoxplot = derive2 { name="GeoBoxplot"; version="1.0"; sha256="164dh49ac3fx38fdglv32lmz92ca8jdd98cbhz6mxsk8r0jcladw"; depends=[]; }; GeoFIS = derive2 { name="GeoFIS"; version="1.0.4"; sha256="095lwn9kldhs8nhpp0b6fzhwn5b8ar8511b4144xjks70f7kg7ym"; depends=[BH data_tree FisPro foreach nnls R6 Rcpp Rdpack rgeos sp]; }; - GeoModels = derive2 { name="GeoModels"; version="1.0.3"; sha256="09gj4nmnvvzq36gch6jbhqjhz1fnl2hrymmcacpq2zch7xrp5ngl"; depends=[codetools data_table dfoptim dotCall64 fields GpGp GPvecchia hypergeo lamW mapproj nabor numDeriv optimParallel pbivnorm plotrix pracma scatterplot3d shape sn spam ucminf VGAM zipfR]; }; + GeoModels = derive2 { name="GeoModels"; version="1.0.5"; sha256="1aac0srxva1pyqriwk7dykx2nh05bnagi2nm1vhvqwb2y24lsk42"; depends=[codetools data_table dfoptim dotCall64 fields GpGp GPvecchia hypergeo lamW mapproj nabor numDeriv optimParallel pbivnorm plotrix pracma scatterplot3d shape sn spam ucminf VGAM zipfR]; }; GeoMongo = derive2 { name="GeoMongo"; version="1.0.3"; sha256="0m5nz5q81jz2v2bl2dbgdbdprrkckxr2c67qn0cg9vms0pi3fawr"; depends=[data_table geojsonR R6 reticulate]; }; GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; }; - GeoTcgaData = derive2 { name="GeoTcgaData"; version="1.1.1.992"; sha256="0xzz5sg9ywmpwym50hbvb1z7f8wwbbr4shiir8kj4mwf22snsk6d"; depends=[cqn data_table dplyr magrittr plyr topconfects]; }; GeoWeightedModel = derive2 { name="GeoWeightedModel"; version="1.0.2"; sha256="0nff8whj5306mbi668y3i31sfbdslyd7cdm6rxafxhii643bm93a"; depends=[beepr cartography dplyr DT GWmodel raster readxl shiny shinyalert shinyBS shinybusy shinydashboard shinyjs shinyWidgets sp spdep]; }; GeodRegr = derive2 { name="GeodRegr"; version="0.2.0"; sha256="029yclgi4np000yh42j68v32m32lq2hmkh94q33hh1qkx8rilfa7"; depends=[MASS zipfR]; }; GeodesiCL = derive2 { name="GeodesiCL"; version="1.0.0"; sha256="1i3i6vlh3nnb7z6qzh2cd6cqka78bfdly952x5ryl7cb2590a4pc"; depends=[dplyr htmltools leaflet leafpop magrittr mapview profvis readr rgdal sp tibble]; }; @@ -1956,7 +1966,7 @@ in with self; { GetDFPData = derive2 { name="GetDFPData"; version="1.6"; sha256="1yxf1i5bipz16pbydl6qxlalh2zpdiigbxd1qczbjc1z78bl5727"; depends=[crayon curl dplyr lubridate readr reshape2 stringr tibble xlsx XML]; }; GetDFPData2 = derive2 { name="GetDFPData2"; version="0.6.2"; sha256="1gn79q9zlx73mmy8q2sy8ah7bvhdns6z4ayhihnn090ch8v0pzdg"; depends=[dplyr lubridate magrittr memoise purrr RCurl readr rvest shiny stringr tidyr writexl xml2]; }; GetFREData = derive2 { name="GetFREData"; version="0.8.1"; sha256="15rca6pfsx5hcl1lnz49904b2ps0312mwjv8d4f0g76jhkvqfvss"; depends=[dplyr GetDFPData2 lubridate magrittr purrr readr rvest stringr XML xml2]; }; - GetLattesData = derive2 { name="GetLattesData"; version="1.4.1"; sha256="0bfvkq5i8b0qz98c5ycv5v1sjp0jvv6la7bl3di6q7c3651nh7nl"; depends=[curl dplyr readr stringdist stringr XML]; }; + GetLattesData = derive2 { name="GetLattesData"; version="1.4.2"; sha256="13g54m19lw9nw1a8f45fysxzgf66g94mrgvyqrhx6mfdw6lkig72"; depends=[curl dplyr readr stringdist stringr XML]; }; GetQuandlData = derive2 { name="GetQuandlData"; version="0.1.0"; sha256="1g1as4m853ab1wp57rzqm0552g0vm7kxzypibv0xywc85084pnmc"; depends=[dplyr jsonlite memoise purrr readr scales stringr]; }; GetTDData = derive2 { name="GetTDData"; version="1.5.1"; sha256="0w77bc03k6qdpx1c87rdmnz976q9a5n84bav5xv78rg7yw7q5ksy"; depends=[bizdays curl dplyr readxl rvest stringr tidyr xml2]; }; GetoptLong = derive2 { name="GetoptLong"; version="1.0.5"; sha256="00fpm6nd3kqa2ikasxa62jzywi46fvvmx1mdavcp5yrxxn37j8wc"; depends=[crayon GlobalOptions rjson]; }; @@ -1973,11 +1983,9 @@ in with self; { GiniWegNeg = derive2 { name="GiniWegNeg"; version="1.0.1"; sha256="1wqwjalsyp55si839cil6na3khigm0mwn6qkg0kjylq10pabfk2a"; depends=[]; }; GlarmaVarSel = derive2 { name="GlarmaVarSel"; version="1.0"; sha256="080v2qckihhacclxi2zscslbwbc6179pc7g02lyqaicf9wrsr8ff"; depends=[ggplot2 glmnet Matrix]; }; GlmSimulatoR = derive2 { name="GlmSimulatoR"; version="0.2.5"; sha256="114mhhpv7phvrzvzar4s1a9032iyhcvixjx4h7b5vd1p23m9sayz"; depends=[assertthat cplm dplyr ggplot2 magrittr MASS statmod stringr tweedie]; }; - GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; }; GlobalOptions = derive2 { name="GlobalOptions"; version="0.1.2"; sha256="0gkm77w6db9ajyncy1xdcivplap06a51zi99m009kylccschd2a7"; depends=[]; }; - GmAMisc = derive2 { name="GmAMisc"; version="1.2.1"; sha256="0rvdphdgk1bdfamwf6spy5k9qa5ws92mvf3q3dlhn6qfazp7j4hr"; depends=[caTools classInt cluster coin corrplot DescTools dismo ggplot2 ggrepel gridExtra Hmisc InPosition kimisc lsr maptools plyr pROC raster RcmdrMisc rgdal rgeos sp spatstat_core spatstat_geom spatstat_random]; }; Gmedian = derive2 { name="Gmedian"; version="1.2.7"; sha256="0m9fp54y4m1xxjqphpnxhw2hspzdca9qc9l60znpnynyj5m6cy2k"; depends=[Rcpp RcppArmadillo robustbase RSpectra]; }; - Gmisc = derive2 { name="Gmisc"; version="3.0.0"; sha256="051bcp15xpxpdq2r2d29wgm49c0n5r0vikwgzciclxs64j1a57ip"; depends=[abind checkmate forestplot glue Hmisc htmlTable knitr lattice lubridate magrittr Rcpp rlang rmarkdown stringr XML yaml]; }; + Gmisc = derive2 { name="Gmisc"; version="3.0.1"; sha256="05g7hdqnp8bjyn7lblnfnl9xjcrbbg6l06sackm38ilyba1hzy9g"; depends=[abind checkmate forestplot glue Hmisc htmlTable knitr lattice lubridate magrittr Rcpp rlang rmarkdown stringr XML yaml]; }; GmptzCurve = derive2 { name="GmptzCurve"; version="0.1.0"; sha256="00n28difj8qs3i539fsd2x07qakyjxf77l8rq5fy07h4f4cpyd0x"; depends=[]; }; GoFKernel = derive2 { name="GoFKernel"; version="2.1-1"; sha256="0xygsdmggl35fafyp431mkwalwixw2r3f32qll1pf72dfwd8y8d3"; depends=[KernSmooth]; }; GofCens = derive2 { name="GofCens"; version="0.92"; sha256="09qy8rsgywdlq04kn6dzdzahhminnx39ih9i84399kn2pnr9vlzi"; depends=[actuar fitdistrplus ggplot2 gridExtra survival survsim]; }; @@ -1993,15 +2001,16 @@ in with self; { GrapheR = derive2 { name="GrapheR"; version="1.9-86-3"; sha256="0wpq7w4lclkzj9ffmqwk2qp5r6kwggh7by47lvhmai4j8g2ha56c"; depends=[]; }; GrassmannOptim = derive2 { name="GrassmannOptim"; version="2.0.1"; sha256="1gdjx9dazrff2nj16044b7vr7jwddf5cj0iwnlhan46fnibsfwjf"; depends=[Matrix]; }; GreedyEPL = derive2 { name="GreedyEPL"; version="1.2"; sha256="19bgrgzb7jdqpljcbhr3d98y331k1b8fbwgcipak6zkhk2vr6vqz"; depends=[Rcpp RcppArmadillo]; }; - GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.4"; sha256="0j2grrnd4yn4d1ly62dzqq0y7l7mh3lpnlfpf5n41a9w489m03hw"; depends=[checkmate GreedyExperimentalDesignJARs kernlab nbpMatching Rcpp rJava survey]; }; + GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.5.5"; sha256="13xdynx28hx06gl0wjzxzbjh8q4chmvpma059lr46j3vzhwhzwik"; depends=[checkmate kernlab nbpMatching Rcpp rJava stringi stringr survey]; }; GreedyExperimentalDesignJARs = derive2 { name="GreedyExperimentalDesignJARs"; version="1.0"; sha256="14i6m5qlh1fca9xmzid01hicd3bkf6rzl139ss78gvw544zrapw7"; depends=[rJava]; }; - Greg = derive2 { name="Greg"; version="2.0.0"; sha256="0vqzjznwfzis5nylv889f06zhi4mb9mhd108ljgn8xlbcmkgmz1n"; depends=[broom dplyr Epi forestplot glue Gmisc Hmisc htmlTable knitr nlme purrr rlang rms sandwich stringr tibble tidyr tidyselect]; }; + Greg = derive2 { name="Greg"; version="2.0.1"; sha256="1c6bplnw7baya2jgqbhwl5rbd8mjrzhq9k8ljd0hwp1z4cxq5m4c"; depends=[broom dplyr Epi forestplot glue Gmisc Hmisc htmlTable knitr nlme purrr rlang rms sandwich stringr tibble tidyr tidyselect]; }; GreyModel = derive2 { name="GreyModel"; version="0.1.0"; sha256="0vxl4kgihcyl96qiz6sz5icznaa1jpsqqbn1irwmzyngwsh1qvzw"; depends=[]; }; - Greymodels = derive2 { name="Greymodels"; version="1.0"; sha256="1libv79qvh925ar8pyd9k18xcyvwbksr5gmlsbwin3z5q765ksgx"; depends=[cmna dplyr expm ggplot2 Metrics particle_swarm_optimisation plotly readxl scales shiny shinydashboard shinyWidgets]; }; + Greymodels = derive2 { name="Greymodels"; version="2.0.1"; sha256="0gv4kqgn10l3pknx7w26yas1h70gsb2h8a82w2ykxs134xl4vpll"; depends=[cmna dplyr expm ggplot2 Metrics particle_swarm_optimisation plotly readxl scales shiny shinydashboard shinyWidgets]; }; GridOnClusters = derive2 { name="GridOnClusters"; version="0.1.0"; sha256="11jir34jdq2kkkgm0rsdn2ivy4r1pkzj0681hxzy9v388lb3icym"; depends=[Ckmeans_1d_dp cluster dqrng fossil mclust plotrix Rcpp Rdpack]; }; GrimR = derive2 { name="GrimR"; version="0.5"; sha256="005ywc31yn1cs54kjlkrryw0s7zm8dqqfjkdlkm4s1sbc9r3mssz"; depends=[car]; }; GroupBN = derive2 { name="GroupBN"; version="1.2.0"; sha256="0x41x7npaawnh6nxh4d4vmv2zwzc6c5ijrhh6fdpwzl4p75qlh1x"; depends=[arules bnlearn ClustOfVar magrittr MLmetrics PCAmixdata plyr PRROC rlist stringr visNetwork zoo]; }; GroupComparisons = derive2 { name="GroupComparisons"; version="0.1.0"; sha256="0fxgh1mksrfmd4yjrpxg3nfby5wyx75lj0shb5xrdzl7pxzh56ai"; depends=[car]; }; + GroupSeq = derive2 { name="GroupSeq"; version="1.4.2"; sha256="01207wc0z9z7m38lnmaf4hml6nva5bcld52clpr2dy9pfcd1x1pd"; depends=[mvtnorm tcltk2]; }; GroupTest = derive2 { name="GroupTest"; version="1.0.1"; sha256="1v2230mw0irsr5y8n45g8sd362jp7f6dy2r532mhflfdqy6i2khs"; depends=[]; }; GrpString = derive2 { name="GrpString"; version="0.3.2"; sha256="14ss6assqk6s9kv4bvzlydm8qrbnslm4vj876q5dn2dw4k50dai1"; depends=[cluster plyr Rcpp]; }; GsymPoint = derive2 { name="GsymPoint"; version="1.1.1"; sha256="1fg8vqd86kcpciphmlcxlm0rk01iza7md5y8kcxp9i732n4zn7r8"; depends=[ROCR Rsolnp truncnorm]; }; @@ -2012,10 +2021,10 @@ in with self; { HACSim = derive2 { name="HACSim"; version="1.0.6-1"; sha256="0hdczpn1x6zcxya8qlp82fzzpli3z2kfvynk5sqk97h1d55d27i4"; depends=[ape data_table matrixStats pegas Rcpp RcppArmadillo shiny]; }; HARModel = derive2 { name="HARModel"; version="1.0"; sha256="17sajqi2g5z69gvnfhkn850jkavi8syhm58xadd2khrm73nvwh2i"; depends=[Rcpp RcppArmadillo sandwich xts zoo]; }; HBSTM = derive2 { name="HBSTM"; version="1.0.2"; sha256="1rw0sav1xrw5sraah3yhw5ypyf99pi9h323nf02qidqfzr9xb214"; depends=[fBasics maps MASS]; }; - HBV_IANIGLA = derive2 { name="HBV.IANIGLA"; version="0.2.1"; sha256="08876xg44md619m8cj1xb34g8xyrp8231nh5z0q6dzggdyfvicir"; depends=[Rcpp]; }; + HBV_IANIGLA = derive2 { name="HBV.IANIGLA"; version="0.2.6"; sha256="1ngvw17k4i4cxdr59fsbm437fn1wqxjz7zn1l6aciygy3rlcncw9"; depends=[Rcpp]; }; HCR = derive2 { name="HCR"; version="0.1.1"; sha256="14s46dyw3ifp3pwwlcwbbl47i6hy2whjj1n65i28am5a33nycgha"; depends=[data_table]; }; HCT = derive2 { name="HCT"; version="0.1.3"; sha256="18k6p9y3vl39mxbvdjanyj3w74jqy2rym6rdbfrx5crvqm9k8hcp"; depends=[rstan]; }; - HCTDesign = derive2 { name="HCTDesign"; version="0.7.1"; sha256="0gwj4z2qwxqzx8b3hnb4bfg1pm78n9g4j5x8gis1rcfrk68sl7d5"; depends=[diversitree flexsurv mvtnorm Rdpack survival]; }; + HCTDesign = derive2 { name="HCTDesign"; version="0.7.2"; sha256="1nncyyw1dlbdl9f1pncwa9xdqrd7w2aw4ghnf01vwyq0m7pj90l1"; depends=[crayon diversitree flexsurv mvtnorm Rdpack survival]; }; HCTR = derive2 { name="HCTR"; version="0.1.1"; sha256="1hg8mpallwxpmamk6q8x87w5hlqqwvbahfw5zmr9pisiagbwcsay"; depends=[glmnet harmonicmeanp MASS ncvreg Rdpack]; }; HCV = derive2 { name="HCV"; version="1.2.0"; sha256="00ry36w2v4h3vkf2jq3djcma23xflr7fx7icy2vzwk9ffnmzvpxd"; depends=[BLSM cluster geometry M3C MASS Matrix rgeos sp]; }; HDBRR = derive2 { name="HDBRR"; version="1.1.4"; sha256="03jl1m099z6gj2ipi7rnjnrd2rmk4zs54332rwlqyf40dv7ndbz1"; depends=[bigstatsr MASS numDeriv]; }; @@ -2023,18 +2032,18 @@ in with self; { HDCurves = derive2 { name="HDCurves"; version="0.1.1"; sha256="1i4axgrm718wm9azrmdwwfysp9lfhn07kr1vgs0dnac1zaf5qzcs"; depends=[]; }; HDDesign = derive2 { name="HDDesign"; version="1.1"; sha256="1jim4h9bwn8r637va7m81kwwsfwyzs9pzn5a9i7c8xz8b1x191bj"; depends=[]; }; HDGLM = derive2 { name="HDGLM"; version="0.1"; sha256="0a5lnh3780lsczj8339sp97c5y64a2gsdf77i56fvpxpphq0dnf8"; depends=[]; }; - HDInterval = derive2 { name="HDInterval"; version="0.2.2"; sha256="1vb5fn9zfig0jqs3mvkpik4wvrndj4qmxqx8rg0iv8nvqc4fnzh4"; depends=[]; }; + HDInterval = derive2 { name="HDInterval"; version="0.2.4"; sha256="1xlljhzd30mi7pic7q55h7hv0bccxfc2g32piv8jx830svnz01xv"; depends=[]; }; HDLSSkST = derive2 { name="HDLSSkST"; version="2.1.0"; sha256="19snvpgiq8kxzqv6yimzn7nfxkch2xkm0sk41m7g4xwr412dn49j"; depends=[Rcpp]; }; HDMT = derive2 { name="HDMT"; version="1.0.5"; sha256="11wr7n6gj75k3a339h9hm167pni3vdbbnwwblc2b0wfljxsif6hf"; depends=[fdrtool qvalue]; }; HDOMDesign = derive2 { name="HDOMDesign"; version="1.0-1"; sha256="1wfq4w73dkkmfwn3n9rwpjlpvm1ak76dv9ymh6zqfls5whdmp59g"; depends=[HadamardR]; }; - HDShOP = derive2 { name="HDShOP"; version="0.1.2"; sha256="0qnxgp7fjinj9c96w724nxvmb2xbihj2wd6ysibr5dk4rvlq16p0"; depends=[Rdpack]; }; + HDShOP = derive2 { name="HDShOP"; version="0.1.3"; sha256="18i17vv71wc0rqfl2i9bcfl1ry3bd61x9nd6g57x37ggjp7i6j5k"; depends=[Rdpack]; }; HDSpatialScan = derive2 { name="HDSpatialScan"; version="1.0.3"; sha256="12aqqzqbapdh3zg2klhqwlhdvg35ayw126x54mj1iwlkmraxq2iv"; depends=[DT fmsb matrixStats pbapply plotrix purrr Rcpp RcppArmadillo rgeos sf sp SpatialNP swfscMisc TeachingDemos]; }; HDStIM = derive2 { name="HDStIM"; version="0.1.0"; sha256="0v43lwszxmka5li6mp10i2c6zq4si5hm2qsb27lib5gq5cxm23r7"; depends=[Boruta broom dplyr ggplot2 ggridges scales tibble tidyr tidyselect uwot]; }; HDTSA = derive2 { name="HDTSA"; version="1.0.1"; sha256="09b3jz552v3hmnhi6ag0dhc7nr5gdc688mcf3n9q8qzvc3l6dglc"; depends=[clime Rcpp RcppEigen sandwich]; }; HDclassif = derive2 { name="HDclassif"; version="2.2.0"; sha256="1l5zxhayhzh7q50ycl481hy0br66ylxyvzw1ahmjjrdkm8s3czyj"; depends=[MASS rARPACK]; }; HDclust = derive2 { name="HDclust"; version="1.0.3"; sha256="18l4qp261gj3kscfxs3s03kmb9y5ml31vnpgpm1iy125bks4mr2y"; depends=[Rcpp RcppProgress Rtsne]; }; HDcpDetect = derive2 { name="HDcpDetect"; version="0.1.0"; sha256="0ai35d9df5pmva52sb1rr20f11h0mbal6d179g865b7w6n90kfr1"; depends=[]; }; - HDiR = derive2 { name="HDiR"; version="1.1.2"; sha256="0hkpc5sap1xvl8difmivharfbxh6vzimh9642d9l48kmp7i1g9hb"; depends=[circular Directional movMF NPCirc rgl]; }; + HDiR = derive2 { name="HDiR"; version="1.1.3"; sha256="1qwd3y9645m8v2gdrb4xjpq86ixs9rgrw7iv3m5lm7nnf87qm350"; depends=[circular Directional movMF NPCirc rgl]; }; HDoutliers = derive2 { name="HDoutliers"; version="1.0.4"; sha256="0vc3g36cghs2ln8a3pb344b3vw1jpz9r8ld77ldd898vg9rhkq2m"; depends=[FactoMineR FNN mclust]; }; HDtest = derive2 { name="HDtest"; version="2.1"; sha256="1c9x4s59762sp7drbm5h1xv22kpifq7p0x3dkrfcd0ficbbma5v8"; depends=[checkmate clime doParallel expm fastclime foreach MASS mvtnorm]; }; HDtweedie = derive2 { name="HDtweedie"; version="1.2"; sha256="0m8xg6fkn81ni1npfadhv2b2zy7nazg46217hr3xw9y53d1a90gk"; depends=[]; }; @@ -2053,7 +2062,7 @@ in with self; { HLMdiag = derive2 { name="HLMdiag"; version="0.5.0"; sha256="0yy0qf9iw5gr40vlmm697rvvvgp077f08fialx3ijn0vfpsjbl2v"; depends=[diagonals dplyr ggplot2 ggrepel janitor magrittr MASS Matrix mgcv plyr purrr Rcpp RcppArmadillo reshape2 rlang stringr tibble tidyselect]; }; HLSM = derive2 { name="HLSM"; version="0.9.0"; sha256="1nvjgv8lbqpig9snnxm3k1qs1r7bf43gw7a3prj9l3kmqdd0i4j3"; depends=[abind coda igraph MASS]; }; HMB = derive2 { name="HMB"; version="1.1"; sha256="19z3d0b98fyjcnbxh3g6h2g927nv0408sbxjlzalrjlw9mbpzd2b"; depends=[Rcpp RcppArmadillo]; }; - HMDHFDplus = derive2 { name="HMDHFDplus"; version="1.9.18"; sha256="1npl0q75vfb7wi4fi6mn2grxswd0n612gxldggwkyz35s3fc4hbk"; depends=[httr rvest XML]; }; + HMDHFDplus = derive2 { name="HMDHFDplus"; version="1.9.19"; sha256="0wvlbgi95wibl40xhib0jlnxiddwhjv9v9qljxcg1bh7b76y7al5"; depends=[dplyr httr janitor lubridate readr rlang rvest stringr tidyr XML]; }; HMM = derive2 { name="HMM"; version="1.0.1"; sha256="03b548bnwqpnd7zypb4gvy9chyi5li2hp99a9vrh4qszxg2ihas7"; depends=[]; }; HMMEsolver = derive2 { name="HMMEsolver"; version="0.1.2"; sha256="0msin7rq3npz221mvrw3zcs6bwz439six99iblx5p3hkp1n1ljf3"; depends=[Rcpp RcppArmadillo Rdpack]; }; HMMcopula = derive2 { name="HMMcopula"; version="1.0.4"; sha256="1gmvav02r3miaq4jx05qjcgzw5qv6w1j77vck5gpps8p38zcp34m"; depends=[copula doParallel foreach matrixcalc mvtnorm]; }; @@ -2077,9 +2086,10 @@ in with self; { HSPOR = derive2 { name="HSPOR"; version="1.1.9"; sha256="06lr8l71y5fcqcnmgq7cgiab1pcc98wnqzndbxcbikbh33cx7nxv"; depends=[corpcor npregfast]; }; HTLR = derive2 { name="HTLR"; version="0.4-4"; sha256="0mi03r9izipvmla5pm0s42vm85ishr3bb8pjdw906s4q7lkxjivz"; depends=[BCBCSF glmnet magrittr Rcpp RcppArmadillo]; }; HTMLUtils = derive2 { name="HTMLUtils"; version="0.1.8"; sha256="1jfhcyibvxqc96sig81a2fj2gplmwxm5h000xlihkbjk7k9fdsrz"; depends=[R2HTML]; }; - HTRX = derive2 { name="HTRX"; version="1.0.7"; sha256="0ydzakwz1cy96z0fg29snxdwcn5czsvgxk2p1al9fh51llqrpbvb"; depends=[caret fastglm]; }; + HTRX = derive2 { name="HTRX"; version="1.1.0"; sha256="0hi52vamlhr81v6q9dk8gs199j6bzx0j9336nx97wzbxz2swkrbh"; depends=[caret fastglm glmnet]; }; HTSCluster = derive2 { name="HTSCluster"; version="2.0.10"; sha256="0scn4fsfmlkzxibfhsh6krm2cl9c8hsmyjgn48k9dyjf0ylyxg9n"; depends=[capushe edgeR plotrix]; }; HTSSIP = derive2 { name="HTSSIP"; version="1.4.1"; sha256="1j2f6f3i4di4bvsk44gxz0narg45ld2rahfn23wpgni5bszy0vb3"; depends=[ape coenocliner DESeq2 dplyr ggplot2 igraph lazyeval magrittr phyloseq plyr stringr tidyr vegan]; }; + HTT = derive2 { name="HTT"; version="0.1.1"; sha256="14a96p8vhb6acsjic66nsc9llvxyqd0ry1yccsjlxw12mami0vs0"; depends=[ggplot2 ggraph igraph Rcpp]; }; HUM = derive2 { name="HUM"; version="2.0"; sha256="06jx3f2zb52gjp05bq3zmgjkyiaa2j9v0biq23gg88gplpign6jw"; depends=[gtools Rcpp rgl]; }; HWEintrinsic = derive2 { name="HWEintrinsic"; version="1.2.2"; sha256="035r5bi7m66g351cmrfmf4cj5qqm4fn5pgy3lzsp3gyp2dv0rkg5"; depends=[]; }; HYPEtools = derive2 { name="HYPEtools"; version="1.1.0"; sha256="1jjcjvr2yamvxwgyvypzh54s4q8nkra565gmq00cbrkff41356iv"; depends=[clipr data_table dplyr ggplot2 ggpubr hydroGOF ncdf4 patchwork pbapply purrr rlang sf stringr tidyr tidyselect]; }; @@ -2094,11 +2104,12 @@ in with self; { HazardDiff = derive2 { name="HazardDiff"; version="0.1.0"; sha256="048lvhb4545a487kyknf5b5v8q3a9nsipbh0ii2k3pcc5vfql1h4"; depends=[ahaz Rdpack rootSolve survival]; }; HeckmanEM = derive2 { name="HeckmanEM"; version="0.1.3"; sha256="06fa77lc42dkimn3h5lcxbp92myydsj91j0sskh0k4igwazxdrk6"; depends=[MomTrunc mvtnorm PerformanceAnalytics sampleSelection]; }; HellCor = derive2 { name="HellCor"; version="1.3"; sha256="1bzc2ipm7vw7s849d43lcs0xrk2rs67h223dn9kahqg152mmknza"; depends=[energy FNN orthopolynom]; }; - HelpersMG = derive2 { name="HelpersMG"; version="5.7"; sha256="1l0hy417r54ljk9mwgx8zzx95v4gvd5s6yhwy5fx7p44lidnanvr"; depends=[coda ggplot2 MASS Matrix rlang]; }; + HelpersMG = derive2 { name="HelpersMG"; version="5.8"; sha256="1ijibkb48qggvj51kyn5fnmq903pyf0w1ambvc5ksx199774ccf4"; depends=[coda ggplot2 MASS Matrix rlang]; }; HeritSeq = derive2 { name="HeritSeq"; version="1.0.2"; sha256="0jzf3pq43lllxvvmf0rqzxz9fx6931mgb0ipminlw1iakz8wa6w3"; depends=[cplm DESeq2 lme4 MASS pbapply SummarizedExperiment tweedie]; }; HeterFunctionalData = derive2 { name="HeterFunctionalData"; version="0.1.0"; sha256="0qrfmxwrxn0rd2ncy3afhraf7m0010nf9739jkj19h1j5vksi9n1"; depends=[]; }; HeteroGGM = derive2 { name="HeteroGGM"; version="0.1.0"; sha256="0cfzqhbnsy2254m1n6vbpcxlmiqw7cs26v81f5wyawlyyvdydmxi"; depends=[igraph MASS Matrix]; }; HextractoR = derive2 { name="HextractoR"; version="1.4"; sha256="1wp7n92wgrjyklq159ymrw8y5ads6lhj2fcz54rzdnccdyx5naxi"; depends=[doParallel foreach seqinr]; }; + HhP = derive2 { name="HhP"; version="1.0.0"; sha256="0rmvw52a7a75gcwsyv30wvxrb9ykhg4ji3pj2jhgbzjqdc4s9xzw"; depends=[fmrs MASS Matrix]; }; HiCfeat = derive2 { name="HiCfeat"; version="1.4"; sha256="1imz7zfax74aakzk8457jww9r66qxpr2ncyvjj0y5paxdn76lnnq"; depends=[GenomeInfoDb GenomicRanges glmnet IRanges Matrix rtracklayer]; }; HiClimR = derive2 { name="HiClimR"; version="2.2.1"; sha256="11aip68cjyy70xr0la1apk6gbkabg8vnc3s5cbydyz7yl4v80nn8"; depends=[ncdf4]; }; HiCseg = derive2 { name="HiCseg"; version="1.1"; sha256="19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"; depends=[]; }; @@ -2113,9 +2124,10 @@ in with self; { HistData = derive2 { name="HistData"; version="0.8-7"; sha256="0cs231w4x8sw2dwy04xwiw01rr2brfz9smwmplw5g1jv1d7afnlj"; depends=[]; }; HistogramTools = derive2 { name="HistogramTools"; version="0.3.2"; sha256="1wkv6ypn006d8j6bpbhc1knw0bky4y8r7jp87482yd19q5ljsgv0"; depends=[ash Hmisc stringr]; }; HiveR = derive2 { name="HiveR"; version="0.3.63"; sha256="1vi24k23a017czfy9kihmq4s1dywzm274dyhyp1imx94afsnmhc3"; depends=[jpeg plyr png RColorBrewer rgl]; }; - Hmisc = derive2 { name="Hmisc"; version="4.7-1"; sha256="0zrfi2mmi6wfl6440iqflzzmkina8dhxia2qsamqw6djd0d5fp9j"; depends=[base64enc cluster data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools lattice latticeExtra nnet rpart survival viridis]; }; + Hmisc = derive2 { name="Hmisc"; version="4.7-2"; sha256="0lyacs5q6mdg9lirixl9r2dqs9ljxyn5d53mmb04ci0jam3vk0wc"; depends=[base64enc cluster data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools lattice latticeExtra nnet rpart survival viridis]; }; Hmsc = derive2 { name="Hmsc"; version="3.0-13"; sha256="13gqwjniwxc5lgsj044qjq6ic0ibwvj3mviw4hq31s89m834gvyb"; depends=[abind ape BayesLogit coda fields FNN ggplot2 MASS Matrix matrixStats MCMCpack nnet pracma pROC rlang sp statmod truncnorm]; }; HoRM = derive2 { name="HoRM"; version="0.1.3"; sha256="09dkpzlwkkdn0z8g9fbb7hzxbrrq70x9v1zx254svck2jyk0hx58"; depends=[ggplot2 MASS orthopolynom quantmod rsm]; }; + HodgesTools = derive2 { name="HodgesTools"; version="1.0.0"; sha256="02i87pd5ah3mmf03878354p8nqh3bgn9cnrl1pnnrb3qw7afj19q"; depends=[data_table dplyr ggplot2 ini magrittr qqman RColorBrewer readr RecordLinkage]; }; Homeric = derive2 { name="Homeric"; version="0.1-3"; sha256="1vcs8fj39zpz45p7gph0mnx65hgr35na0b79i8llyw7i1h7zqzxr"; depends=[]; }; HomomorphicEncryption = derive2 { name="HomomorphicEncryption"; version="0.1.0"; sha256="1agw7s9ccj4hi74scqqs8v65gsavxb5c3217rw0kk9cibq7bma2v"; depends=[polynom]; }; HostSwitch = derive2 { name="HostSwitch"; version="0.1.2"; sha256="0gxln6375li33sl4ampw9d926d4bfd58ls7bgba6baqp87p9wq16"; depends=[checkmate ggplot2 purrr shiny tippy]; }; @@ -2123,7 +2135,7 @@ in with self; { HotellingEllipse = derive2 { name="HotellingEllipse"; version="1.1.0"; sha256="1xvm54iqgdnqjpkmgi4ssgpdz2pap60y9z9whrv2ky3q16mjqycz"; depends=[dplyr FactoMineR ggforce ggplot2 lifecycle magrittr purrr tibble]; }; HuraultMisc = derive2 { name="HuraultMisc"; version="1.1.1"; sha256="0bi1y7icrg0f4n9ah9dsrijnfr39bqg3799rz4hccd1b061f0rvj"; depends=[cowplot dplyr ggplot2 HDInterval Hmisc magrittr reshape2 rstan tidyr]; }; HurreconR = derive2 { name="HurreconR"; version="1.0"; sha256="0ga9dzywpn8hm2vq36y3mhsxzvs151xknjjljmcihaczph6yyny4"; depends=[raster rgdal]; }; - HyRiM = derive2 { name="HyRiM"; version="2.0.1"; sha256="09njf2gscn13x5mfd7g76cam9bzbibcnc383gb8h0kks7x16d3p9"; depends=[compare grImport2 orthopolynom purrr Rglpk]; }; + HyRiM = derive2 { name="HyRiM"; version="2.0.2"; sha256="02hb8kl02872xvyhg0k19xavcmhqmf0ddfnxx5nxlpzgzb432csd"; depends=[compare grImport2 polynom purrr Rglpk]; }; HydeNet = derive2 { name="HydeNet"; version="0.10.11"; sha256="1qi87k2drizqba1nz8psh697ks8ai8xz492kzsrs76xlxpbk1i9k"; depends=[checkmate DiagrammeR dplyr graph magrittr nnet pixiedust plyr rjags stringr]; }; HydroCode = derive2 { name="HydroCode"; version="1.0.2"; sha256="1igshik28xcxrdg116vs9s2yfbz5fik9xvlgfkgai3w9qj0x1h5q"; depends=[sp]; }; HydroMe = derive2 { name="HydroMe"; version="2.0-1"; sha256="1pzf3z3f2xqmj7ixdg01k8552l4vz7yaf2mb53q59ihfhlbqchni"; depends=[]; }; @@ -2141,7 +2153,7 @@ in with self; { IBDLabels = derive2 { name="IBDLabels"; version="1.1"; sha256="1m9fd058yjxva6hin7i72i2nl285wfm0jkdn5xcng27yqlijyrm9"; depends=[]; }; IBDsim = derive2 { name="IBDsim"; version="0.9-8"; sha256="1a0xz1khl6cz6ajcn903fcmsv8g7hfdh7684zhk0g6awsgwqdf5q"; depends=[paramlink]; }; IBMPopSim = derive2 { name="IBMPopSim"; version="0.3.1"; sha256="1infqxfwqg6y4d8g3wmi3wg243hqjjmzirm00dhxiav4ps8yrg1q"; depends=[checkmate dplyr ggplot2 purrr Rcpp readr reshape rlang tidyr]; }; - IBrokers = derive2 { name="IBrokers"; version="0.10-1"; sha256="0fvbgcbxmgjnzqrxwc4iq14li9gxkg0bd4yj9wgx4y6akn7xaykw"; depends=[xts zoo]; }; + IBrokers = derive2 { name="IBrokers"; version="0.10-2"; sha256="06pp2fgzbwpk95r0pvaskx44q33mlady8bq5i13c4qc60vkafyag"; depends=[xts zoo]; }; ICAMS = derive2 { name="ICAMS"; version="2.3.10"; sha256="0kkxn45addgl7mg8w4ybna7xaj11dgrwax06l0ml3bnk8h0nrgi5"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges IRanges RColorBrewer stringi zip]; }; ICAOD = derive2 { name="ICAOD"; version="1.0.1"; sha256="07fxh60vsndlvjijjsh1a9l2qkp78sb9nkg5x5mslh209lpjjhw1"; depends=[cubature mnormt mvQuad nloptr Rcpp RcppEigen sn]; }; ICBioMark = derive2 { name="ICBioMark"; version="0.1.4"; sha256="1bvlbczlkjdql98ds5wgmg3j2dxbfm5i4yzq98pdkzaiccg8sx2v"; depends=[dplyr gglasso ggplot2 glmnet latex2exp Matrix matrixStats PRROC purrr]; }; @@ -2163,6 +2175,7 @@ in with self; { ICSOutlier = derive2 { name="ICSOutlier"; version="0.3-0"; sha256="1vj1y4zw8pkghkg4qnmx0yk1yw4zzl9075n5czrna9ckk2p29fmh"; depends=[ICS moments mvtnorm]; }; ICSS = derive2 { name="ICSS"; version="1.1"; sha256="0kmsw8347ka5n0qncx7hqgs153ihkmxbl0wc5kqlb2l42sl6rp8x"; depends=[rstack]; }; ICSShiny = derive2 { name="ICSShiny"; version="0.5"; sha256="0a13vps0mkv5qs6qnl7ar0mdbkbd7i1c6kgwahmkb3id3n9bw0cl"; depends=[DT ICS ICSNP ICSOutlier rrcov shiny simsalapar]; }; + ICSsmoothing = derive2 { name="ICSsmoothing"; version="1.2.6"; sha256="14rs07594xzvsy62k3qacx5va4k7wq595bnp28vnvrmnqb219kk1"; depends=[ggplot2 polynom]; }; ICV = derive2 { name="ICV"; version="1.0"; sha256="1na87i39jy5d8ibldqcqz3a072ihkgcl0k629sxch9hk6v6j5lly"; depends=[]; }; ICcalib = derive2 { name="ICcalib"; version="1.0.8"; sha256="1y2w12ka0qxh9dg6dlcrnndz1xrv8gkppan64qkyk5vjrh18ajz4"; depends=[fitdistrplus icenReg ICsurv MASS msm numDeriv Rcpp RcppArmadillo survival]; }; ICcforest = derive2 { name="ICcforest"; version="0.5.1"; sha256="0z511d3drq5flxwvx7kjv3v5yanjhvs5ayvkm996jbiz3k49a12v"; depends=[icenReg ipred partykit survival]; }; @@ -2178,18 +2191,17 @@ in with self; { IDPSurvival = derive2 { name="IDPSurvival"; version="1.2"; sha256="0hifs8vw3rxlb5vlxs1433pcv2dh7p0mxpgb2n03d98f20vkdwfw"; depends=[gtools Rsolnp survival]; }; IDPmisc = derive2 { name="IDPmisc"; version="1.1.20"; sha256="0zy6mxqa8arq0vvhsdcifzm3085c23rnwa1n36fhircph1xwvfdw"; depends=[lattice]; }; IDSA = derive2 { name="IDSA"; version="2.1"; sha256="0ld2359ksnw9jrjicnqikh5r321mfy2i7vzlhh9phm60k0qf5j98"; depends=[GD ggplot2 kableExtra reshape2]; }; - IDSL_IPA = derive2 { name="IDSL.IPA"; version="2.4"; sha256="1ppbq27nw3xgvpr6lswx3hfx2jkr9rnkcq7hvzpz44x5mk8dc3vw"; depends=[base64enc doParallel foreach ggplot2 gridExtra IDSL_MXP png readxl RNetCDF xml2]; }; - IDSL_MXP = derive2 { name="IDSL.MXP"; version="1.6"; sha256="0mc3p7s9y0nm1xpajq06039bpfsq8qfwk1azicrkd53dsvqbbg45"; depends=[base64enc RNetCDF xml2]; }; + IDSL_IPA = derive2 { name="IDSL.IPA"; version="2.5"; sha256="0zfskczgpw57z94la0n5883mhcmijgknb7sf87cr5wz3kgp19qxd"; depends=[doParallel foreach IDSL_MXP readxl]; }; + IDSL_MXP = derive2 { name="IDSL.MXP"; version="1.7"; sha256="0mh15bcrv3iy033l9ry0j0b0my3xxyn32p52rrfya5ybc0d35c79"; depends=[base64enc xml2]; }; IDSL_SUFA = derive2 { name="IDSL.SUFA"; version="1.1"; sha256="1jfw96xgwd55lpif3wm0xj4ly48rff7ay8g0bx898jd4jyr05idz"; depends=[]; }; - IDSL_UFA = derive2 { name="IDSL.UFA"; version="1.6"; sha256="17x703za3smx2mlb1hvyx8agq8anw0932ssf2l14c09h5n139yh6"; depends=[base64enc doParallel foreach GA ggplot2 gridExtra IDSL_IPA IDSL_MXP readxl RNetCDF xml2]; }; - IDSL_UFAx = derive2 { name="IDSL.UFAx"; version="1.6"; sha256="09ghkvwywhi0790wql1lrpcgylpx3pxzclw1cbq2lcpmi9lyq0xw"; depends=[base64enc doParallel foreach IDSL_IPA IDSL_MXP IDSL_UFA RcppAlgos readxl RNetCDF xml2]; }; - IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.3.12"; sha256="0gkicafnzq8aq9bmbbr9n868sh91dwkhs1dk4wry5vkbfaawfxis"; depends=[doParallel foreach igraph spatstat_core spatstat_geom]; }; + IDSL_UFA = derive2 { name="IDSL.UFA"; version="1.7"; sha256="0g3q2qih21kv72cl2bpcf84mdc9kg3jqcbpyd4phbsdq9bj519q8"; depends=[doParallel foreach IDSL_IPA readxl]; }; + IDSL_UFAx = derive2 { name="IDSL.UFAx"; version="1.7"; sha256="09g7zbvimhcfj2zwngsfgjfrrkj3ljfdibwdq4zrwijd0n09g9b3"; depends=[doParallel foreach IDSL_IPA IDSL_UFA RcppAlgos readxl]; }; IDetect = derive2 { name="IDetect"; version="0.1.0"; sha256="1q1jwgildhx6sp883ni7vcsa3gj997855v5ky41dyf34kv7hvdl1"; depends=[]; }; IDmeasurer = derive2 { name="IDmeasurer"; version="1.0.0"; sha256="0n7rziaaxm9dqixmw6rxgq9dwnwdl3dsdnpd9s59k5skdlaxnl5m"; depends=[infotheo lme4 MASS]; }; IDmining = derive2 { name="IDmining"; version="1.0.7"; sha256="1yv8lclkb1ws2n4yd3l561lqhp25vlw0f6d073yg04pidr2dpg2a"; depends=[data_table doParallel foreach]; }; IETD = derive2 { name="IETD"; version="1.0.0"; sha256="0avhyw0zcb8vj0nqfy41yq5kcd8yf9rmaawdvfcy5rqwxmi1mw9l"; depends=[doParallel dplyr foreach ggplot2 lubridate Rdpack]; }; - IFAA = derive2 { name="IFAA"; version="1.0.9"; sha256="0shgcwbcllf9xb97pdpf4mb1xzvh5b2q784qdliac7hzymd2jg62"; depends=[DescTools doParallel doRNG foreach glmnet HDCI mathjaxr Matrix MatrixExtra parallelly S4Vectors stringr SummarizedExperiment]; }; - IFC = derive2 { name="IFC"; version="0.1.7"; sha256="0nw0bkw9qk535q1cdhhb8j8k7hx56m62swlz91d57kqs064j9mkn"; depends=[DT gridExtra jpeg KernSmooth lattice latticeExtra png Rcpp RcppProgress tiff visNetwork xml2]; }; + IFAA = derive2 { name="IFAA"; version="1.1.0"; sha256="0rk9xwpcm2dhf1fxm9adyhmpvf8ibg8m2v4jn5x1alynnzwdm25j"; depends=[DescTools doParallel doRNG foreach glmnet HDCI mathjaxr Matrix MatrixExtra parallelly S4Vectors stringr SummarizedExperiment]; }; + IFC = derive2 { name="IFC"; version="0.1.8"; sha256="16ipdrn423x09wngv86a86gqh19fcpdy9gv2f08asfmyhz8jxkv6"; depends=[DT gridExtra gridGraphics jpeg KernSmooth lattice latticeExtra png Rcpp tiff visNetwork xml2]; }; IFP = derive2 { name="IFP"; version="0.2.4"; sha256="066wz6bjqcvq22gjg2wcmglp798f87rsc8yhm13p0dic3arb5ph6"; depends=[coda haplo_stats]; }; IGCities = derive2 { name="IGCities"; version="0.2.0"; sha256="1564bzvi6vgg9q8s97mxjwklr83vkcv8f526savkhnjxdzi1zmy0"; depends=[]; }; IGST = derive2 { name="IGST"; version="0.1.0"; sha256="12ycrfsgwakaj3k39k1j4ky58wr7a2ibyz6j9cznvjjv6cgz9zg5"; depends=[BootMRMR e1071]; }; @@ -2215,14 +2227,16 @@ in with self; { INTRIGUE = derive2 { name="INTRIGUE"; version="0.1.0"; sha256="1l1vfl0m4iqniwp4bp1bfjpqhwahg341fpyxhryr0j8lypqaw7si"; depends=[dplyr rlist SQUAREM]; }; IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.6.3"; sha256="1y8qvjm9mrdfxzgxyn5w8798gay0mf4l5lw7s845bcglpyr91q6p"; depends=[colorRamps colorspace data_table dplyr ggplot2 httr knitr magrittr plotly RColorBrewer Rcpp reshape2 shiny stringi]; }; IOHexperimenter = derive2 { name="IOHexperimenter"; version="0.1.4"; sha256="0aacliznncl488rjsnx02pfj1mchhcyb36v816g959ll38pvc6bk"; depends=[assertthat BH magrittr Rcpp]; }; + IOLS = derive2 { name="IOLS"; version="0.1.1"; sha256="196lbdz5154j7s20cn1qb10kx6fk6mvn4dvm4pwrg8d1lj4nznfr"; depends=[boot matlib randomcoloR sandwich stringr]; }; IPCAPS = derive2 { name="IPCAPS"; version="1.1.8"; sha256="17ifkgjjnvvcc8dp065ng4ad9lr85lcdcb401vi84yy8m2llbypw"; depends=[apcluster expm fpc KRIS LPCM MASS Matrix Rmixmod]; }; IPCWK = derive2 { name="IPCWK"; version="1.0"; sha256="0hah1xl6zli0346jh57rjc5x8vynhaysj0l481rmvznsghv6im23"; depends=[MASS survival]; }; IPDFileCheck = derive2 { name="IPDFileCheck"; version="0.7.5"; sha256="1y0qq6q98lq1srsp1mlb7mr9zn2v4j7gpzim9fgh3xarw6a89i0h"; depends=[dplyr eeptools effsize gmodels gtsummary hash kableExtra lmtest lubridate stringr testthat tidyselect tidyverse zoo]; }; IPDfromKM = derive2 { name="IPDfromKM"; version="0.1.10"; sha256="1pqi6cshiha4gnra25fgpggyi42mn2hg25s9m9mh091rn5km44q0"; depends=[dplyr ggplot2 gridExtra readbitmap survival]; }; IPEC = derive2 { name="IPEC"; version="1.0.3"; sha256="1f5draxw3q26d03h6mcyc8zrd1gmizmc0v01sppdnx8a21878rqz"; depends=[MASS numDeriv]; }; - IPEDSuploadables = derive2 { name="IPEDSuploadables"; version="2.5.5"; sha256="04mliv44p3nfg898cxlw8k2kdpmfmyglvd2c4waka1qppinhvyap"; depends=[dplyr lubridate magrittr purrr rlang stringr svDialogs tidyr]; }; + IPEDS = derive2 { name="IPEDS"; version="0.1.0"; sha256="122v4m3lf5ix10a1ihw1qi8w975iamscaqg2vc5f5k6z8dy9s6ph"; depends=[dplyr readr rlang tidyr]; }; + IPEDSuploadables = derive2 { name="IPEDSuploadables"; version="2.6.5"; sha256="05klj38wh4bywgahkzwyajsvy2nc1jy86klkbhh7m8hs4qw6kh8r"; depends=[dplyr lubridate magrittr purrr rlang stringr svDialogs tidyr]; }; IPLGP = derive2 { name="IPLGP"; version="2.0.3"; sha256="02gjsbd5bfqi575xs3fq01r1cr01gmsxxb58bfj3npgwba8vah21"; depends=[ggplot2 sommer]; }; - IPMbook = derive2 { name="IPMbook"; version="0.1.3"; sha256="0wjzp3l7w4cp0g6c1q84l18pkb0sjjnspidxdv32pn7rqj7wsmcf"; depends=[abind]; }; + IPMbook = derive2 { name="IPMbook"; version="0.1.4"; sha256="152y6d949jjfdfmcjfi0g4p2d02pmqgamxmx5bi3wb352jbjxl08"; depends=[abind]; }; IPPP = derive2 { name="IPPP"; version="1.1"; sha256="19ccs25fd56ns7ssi51w2jzjd4d57vyimwmfvf27mmigb537bd5y"; depends=[]; }; IPV = derive2 { name="IPV"; version="1.0.0"; sha256="0h1x2scmwgzl7i0kk4pf7kfq55yiqn065s5r944rrfk09y9g2vgy"; depends=[ggforce ggplot2 lavaan Matrix reshape2 stringr]; }; IPWboxplot = derive2 { name="IPWboxplot"; version="0.1.1"; sha256="07qvdflwmyy0406xkkgja31cggfv4pak2hhnhh8fwggj2zkj9z8n"; depends=[isotone]; }; @@ -2235,13 +2249,13 @@ in with self; { IRTest = derive2 { name="IRTest"; version="0.0.2"; sha256="0fgr7s97mbqy561hwcll11cyx9b5csp0db3iashgs8jbv6q59vgk"; depends=[betafunctions dcurver ggplot2]; }; IRdisplay = derive2 { name="IRdisplay"; version="1.1"; sha256="0awdiv4rr93y8jb1d64sm1iy37ywyniqm7w98yv6qm0zz47h7sw3"; depends=[repr]; }; IRexamples = derive2 { name="IRexamples"; version="0.0.2"; sha256="0a8b5bfjg0f5l2awg1q80xb9i0fbvss466z7j61lzpps83059w9r"; depends=[DisImpact dplyr forcats geodist ggplot2 ggthemes maps RSelenium rstanarm rvest sf survey tidycensus tidygeocoder tigris twang]; }; - IRkernel = derive2 { name="IRkernel"; version="1.3"; sha256="00qrmsywpzw2hfp88020zjaijma7q4hqm9h2cz53rywdjzywnzss"; depends=[crayon digest evaluate IRdisplay jsonlite pbdZMQ repr uuid]; }; + IRkernel = derive2 { name="IRkernel"; version="1.3.1"; sha256="03343ds7sprql1c6h41dibk40rc3225mzxca452ns967fyhy71ii"; depends=[crayon digest evaluate IRdisplay jsonlite pbdZMQ repr uuid]; }; IRon = derive2 { name="IRon"; version="0.1.3"; sha256="0w2impcvy0chsq7y1dxrxmw70aagddnp3i2vcp4y0hnsqn34xzps"; depends=[ggplot2 ggpubr gridExtra Rcpp robustbase scam]; }; ISAT = derive2 { name="ISAT"; version="1.0.5"; sha256="0xlq568spfz527jxbqamrn1j87hnasg0kp2bcyjycaghmhsc6zmg"; depends=[gtools stringr]; }; ISCO08ConveRsions = derive2 { name="ISCO08ConveRsions"; version="0.1.1"; sha256="1vqg28alpjb1m33hzh4ixfd6f3gzc6l9989gpszvl3ishki05xqf"; depends=[]; }; ISEtools = derive2 { name="ISEtools"; version="3.2.0"; sha256="1dj8q1072j7sn7j9s2mjxm12k6kn5gcqpic8jp2k1f3f7b85dbij"; depends=[coda]; }; ISLR = derive2 { name="ISLR"; version="1.4"; sha256="1hr0r00m9y39gzb4q7nip07mhxmaly12zwmwkisyx641h0vcclbi"; depends=[]; }; - ISLR2 = derive2 { name="ISLR2"; version="1.3-1"; sha256="1hmcpw3nrldxayklp0whlgd5xi1zap8j5g2231i5hp3lsqh6skg6"; depends=[]; }; + ISLR2 = derive2 { name="ISLR2"; version="1.3-2"; sha256="0ljz5lb5srilziyqgka4rcp7d5r4hs6jq9fm3gi1g57agn896vyn"; depends=[]; }; ISM = derive2 { name="ISM"; version="0.1.0"; sha256="0by0w6zgnwcwzbmxx16s8mb1avhc6aiavqp0qkxx6hr70vrgb997"; depends=[rJava xlsx xlsxjars]; }; ISOcodes = derive2 { name="ISOcodes"; version="2022.09.29"; sha256="1rag5mb3bbyxp8n32rhfyy752cy9hh5j80lp9xljj70scvglzbjb"; depends=[]; }; ISOpureR = derive2 { name="ISOpureR"; version="1.1.3"; sha256="1ydhsh3v6n7prrg0dm7hsg8wx1244g791xnz1sjyhljhm31hgwc0"; depends=[futile_logger Rcpp RcppEigen]; }; @@ -2253,7 +2267,7 @@ in with self; { ITRLearn = derive2 { name="ITRLearn"; version="1.0-1"; sha256="03xdbpn3qddcq9krdpnywd3xbzfh2viym2qqx6rcqs7w7bdhhlk6"; depends=[Formula kernlab]; }; ITRSelect = derive2 { name="ITRSelect"; version="1.0-1"; sha256="0llr4hrlbnb728j5rw7vd3r9qlqf571hrldnm72kicis5di2v5di"; depends=[Formula Matrix ncvreg Rglpk svMisc]; }; IVYplot = derive2 { name="IVYplot"; version="0.1.0"; sha256="1v739xlim3mcw09cyp4z3cbb25ipkpwm9h378fwy2ycp8lmq32gy"; depends=[plyr]; }; - IceSat2R = derive2 { name="IceSat2R"; version="1.0.3"; sha256="1jlrp2rhxsmcryhcxn124m5m8cak148q5856j4ay1xn0bi4nwqxq"; depends=[data_table doParallel foreach glue httr leafgl leaflet leaflet_extras leafsync lubridate lwgeom magrittr miniUI rnaturalearth rvest sf shiny units]; }; + IceSat2R = derive2 { name="IceSat2R"; version="1.0.4"; sha256="1jwy1fwnc2rq3c643maa2h7hrwzq0sm6iv35kil95n3pw7pkgdy3"; depends=[data_table doParallel foreach glue httr leafgl leaflet leaflet_extras leafsync lubridate lwgeom magrittr miniUI rnaturalearth rvest sf shiny units]; }; IgAScores = derive2 { name="IgAScores"; version="0.1.2"; sha256="0ckqjbn0xc894dc23gbaqzr6z6rl5h0k8gc5gjhbhwvrc2zlyfsp"; depends=[]; }; ImaginR = derive2 { name="ImaginR"; version="0.1.7"; sha256="12ypfrqw6xym84i1axd3h0qd2md96rc0glas3rgzpdhdyw4lbfmn"; depends=[imager jpeg]; }; Immigrate = derive2 { name="Immigrate"; version="0.2.1"; sha256="0pnnvv63kkg7pgyblb1vlx54c6169n40fn58aypdy5xcnknabvxn"; depends=[pROC Rcpp]; }; @@ -2279,7 +2293,6 @@ in with self; { InflectSSP = derive2 { name="InflectSSP"; version="1.4.5"; sha256="02g8w4xfj0xs5fzjmx9vzhd7nn2aici8ircl8y4xr97pq3w7chg6"; depends=[data_table GGally ggplot2 httr jsonlite network plotrix RColorBrewer readxl svglite tidyr xlsx]; }; InfoTrad = derive2 { name="InfoTrad"; version="1.2"; sha256="0blfn59w73hjga15sw8plwvn6yq9fj95nxwp018mp1harl8wa5db"; depends=[nloptr]; }; Information = derive2 { name="Information"; version="0.0.9"; sha256="0pszwzj3r7vdvdsy9w1qz95zxp7y2bsyg36b58mm4qcvcvymd4kn"; depends=[data_table doParallel foreach ggplot2 iterators plyr]; }; - InformationValue = derive2 { name="InformationValue"; version="1.2.3"; sha256="1b5g2wyp7x5cdhmf4325n3q7afa6i352lh80j28c8s4356pr3w9j"; depends=[data_table ggplot2]; }; InformativeCensoring = derive2 { name="InformativeCensoring"; version="0.3.5"; sha256="1c8mfb82px9z27lc7br514mcbl65q7lfa3df9w3vvnk5g7ljswha"; depends=[boot dplyr survival]; }; Infusion = derive2 { name="Infusion"; version="2.0.0"; sha256="1f4j8qy6ykwp0xi8gbh2f4n6awc8zd5sqxgb7fgjmdw3k7gvs1ah"; depends=[blackbox foreach mvtnorm numDeriv pbapply proxy ranger spaMM viridis]; }; InjurySeverityScore = derive2 { name="InjurySeverityScore"; version="0.0.0.2"; sha256="0g52cksa774in18ykrym61l3my9zm343bgsq5mg7mki9x65xd35z"; depends=[dplyr rlang tidyr]; }; @@ -2297,8 +2310,8 @@ in with self; { InteractionPoweR = derive2 { name="InteractionPoweR"; version="0.2.0"; sha256="09d3v425nj8ph8qsm85z68rixq7k1yppf5v0jmh8klbhn5rikajn"; depends=[chngpt doParallel dplyr foreach ggbeeswarm ggplot2 MASS polynom rlang tidyr]; }; Interatrix = derive2 { name="Interatrix"; version="1.1.3"; sha256="1pjyfg5p6081hng9h6wcmfnlfkcs300c3x9ksdj01587b97ph9s1"; depends=[MASS]; }; InterfaceqPCR = derive2 { name="InterfaceqPCR"; version="1.0"; sha256="12nmkv6qnzh2dnbhk1656dla6mrznh24gqblmn4xai7wg4p92fbx"; depends=[plyr reshape2 tkrplot xlsx]; }; - InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="1.2"; sha256="1iaw4i14l2vp1f163g2q4pwv9cnqrx14ik4s8zw0iha4zwcrc3ja"; depends=[DBI doParallel enviPat foreach plyr Rdisop RSQLite]; }; - IntervalQuestionStat = derive2 { name="IntervalQuestionStat"; version="0.1.0"; sha256="17q9y2if60g4546jwkyyi9p2vbkzbzgnf4zwbxw4fz3473w84sls"; depends=[]; }; + InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="1.3.3"; sha256="1nvi5l0m5118b0m65l52mby34vw05nhp37pl6rba1220a10iasih"; depends=[enviPat plyr Rdisop]; }; + IntervalQuestionStat = derive2 { name="IntervalQuestionStat"; version="0.2.0"; sha256="0pvz5l0pvw8akmvv51c48fx1ppms9iq6s4bwscja8jk56akx2wlq"; depends=[]; }; IntervalSurgeon = derive2 { name="IntervalSurgeon"; version="1.1"; sha256="0dhsy40wx47g7h8ivriscyvxwl991lfal4nq0j476kamxax0yzbw"; depends=[Rcpp]; }; InvStablePrior = derive2 { name="InvStablePrior"; version="0.1.0"; sha256="1nkbly897prbffdrcrxdvr16f6ipm3if1dg3rm35jcl2ksya6snd"; depends=[fdrtool nimble]; }; InvariantCausalPrediction = derive2 { name="InvariantCausalPrediction"; version="0.8"; sha256="01ckyvjl9lxdpkr0v1da4n4lw3b5z1bxlmf0v6ibqly1mhfwybjl"; depends=[glmnet mboost]; }; @@ -2351,7 +2364,7 @@ in with self; { JWileymisc = derive2 { name="JWileymisc"; version="1.3.0"; sha256="1g1mpdxdl27y5ixyfa0fr0zzs0wmvkc2ddnc1bmjyk8xbf2kpd7y"; depends=[data_table digest emmeans extraoperators fst ggplot2 ggpubr ggthemes lavaan lme4 MASS mgcv mice multcompView psych quantreg rms robustbase VGAM]; }; JacobiEigen = derive2 { name="JacobiEigen"; version="0.3-4"; sha256="1jm63w2jn89pk725x3d9myq010mb0g5ir8vhv29mkiwgrqig6iw1"; depends=[Rcpp]; }; JamendoR = derive2 { name="JamendoR"; version="0.1.1"; sha256="0rrfbci413mqq53p5fyj8rjangdx21iyin6hzqkxyrxrv3n5mfbx"; depends=[dplyr httr jsonlite]; }; - JavaGD = derive2 { name="JavaGD"; version="0.6-4"; sha256="1q48iykjzy22avmx0yy03vv9c7h87qsphg5hsrzfmx5gvck61m06"; depends=[rJava]; }; + JavaGD = derive2 { name="JavaGD"; version="0.6-5"; sha256="1wl31k02x3j9hpf8c8gsmi3k3b3vz9a3y38pz6wa9r41r791rnr1"; depends=[rJava]; }; Jaya = derive2 { name="Jaya"; version="0.1.9"; sha256="0b23l7xp4waxjy1vkk09xaali5axr5900v9hkki4f75wh4gb1l53"; depends=[GA]; }; Jdmbs = derive2 { name="Jdmbs"; version="1.4"; sha256="14wprvxjyx1da1642z11wkzjiyxd5rbpaw1mzq4x6aw53dvh1kgv"; depends=[ggplot2 igraph png]; }; Jmisc = derive2 { name="Jmisc"; version="0.3.1.1"; sha256="0fcch7rg8gn92855smd7h2andr33h9dnccjy12w2bx0px8rnqa0s"; depends=[]; }; @@ -2378,7 +2391,7 @@ in with self; { KMsurv = derive2 { name="KMsurv"; version="0.1-5"; sha256="0hi5vvk584rl70gbrr75w9hc775xmbxnaig0dd6hlpi4071pnqjm"; depends=[]; }; KMunicate = derive2 { name="KMunicate"; version="0.2.2"; sha256="13lkblm4kn8m4fr6cms8jz1ankxkynics04ajzfrxf6rd6b1xhc8"; depends=[checkmate cowplot ggplot2 pammtools survival tidyr]; }; KNNShiny = derive2 { name="KNNShiny"; version="0.1.0"; sha256="16zm8bhdivaap3mvhdx2qn1b1j2iqyarclb0y2qd1n4viwcfm9c1"; depends=[caret dplyr e1071 FNN psycho rhandsontable rmarkdown shiny]; }; - KODAMA = derive2 { name="KODAMA"; version="2.2"; sha256="0qis85v9g23f17grb1d69l8s7qdlya72fscvqh75k7sly5jlbpix"; depends=[minerva Rcpp RcppArmadillo Rtsne]; }; + KODAMA = derive2 { name="KODAMA"; version="2.3"; sha256="0b8kgr2y623nrw1658s3daja1x25sg4icxcmvlm1fvp0bs2k1w54"; depends=[minerva Rcpp RcppArmadillo Rtsne umap]; }; KOGMWU = derive2 { name="KOGMWU"; version="1.2"; sha256="1vz0099gp1r10n7w4p480l8rswdw100sns196d9xin2ibmmd2fx9"; depends=[pheatmap]; }; KONPsurv = derive2 { name="KONPsurv"; version="1.0.4"; sha256="08z24w04rzydm86z201crcmyw88sg92yqma5hzj0blj0fyqakwmi"; depends=[Rcpp survival]; }; KPC = derive2 { name="KPC"; version="0.1.2"; sha256="1i9kpr0pib6a8qn7ibmhbay4vxr96ca4kcp5aswmlvcv4ycmw6lx"; depends=[data_table kernlab mlpack proxy RANN]; }; @@ -2396,6 +2409,7 @@ in with self; { Karen = derive2 { name="Karen"; version="1.0"; sha256="1yy80j15lra1zmak3klvqspy9ikhr0v7csl88l9cpbdpp73972by"; depends=[abind expm gaussquad igraph MASS Matrix mvtnorm scales stringr tmvtnorm xtable]; }; KarsTS = derive2 { name="KarsTS"; version="2.4.1"; sha256="1km8321a8vzff26g3x2hvdv5ciyk3fdpcn7g1xqbsx96fzxyd22n"; depends=[circular forecast infotheo mgcv missForest MVN nonlinearTseries plot3D rgl stinepack stlplus tcltk2 tseries tseriesChaos zoo]; }; KbMvtSkew = derive2 { name="KbMvtSkew"; version="1.0.2"; sha256="14g27a0dkj4gpf5l2k96fd3aa21fz8b85lf5a1jxj0qgjmr4kib0"; depends=[]; }; + Kcop = derive2 { name="Kcop"; version="1.0.0"; sha256="0p9ik4z2jc2ib70v8lxxa40f13jbqgq6bb9s7yx335na9l43h1j8"; depends=[copula dplyr gtools orthopolynom]; }; KenSyn = derive2 { name="KenSyn"; version="0.3"; sha256="0s8sq3caxn4swac81196dp52r9lbmxb3ni45yaxh53f5g34slsi8"; depends=[lme4 metafor nlme]; }; Kendall = derive2 { name="Kendall"; version="2.2.1"; sha256="1xmk95l4i3kj9jn0xh1chi2rj322k29jq14ra5pa7316gwf9vx2m"; depends=[boot]; }; KernSmooth = derive2 { name="KernSmooth"; version="2.23-20"; sha256="0fgclmzk3ksjsh3j47jqzm3jhqrwn12rkp7f84yr6wr43q2pbsr0"; depends=[]; }; @@ -2404,7 +2418,7 @@ in with self; { Kernelheaping = derive2 { name="Kernelheaping"; version="2.3.0"; sha256="0nd8kbprpm2jrpnqr4xb4z8wklv5js2y3kdpjc2q0ay229hf85j8"; depends=[dplyr fastmatch fitdistrplus GB2 ks magrittr MASS mvtnorm plyr sp sparr]; }; Keyboard = derive2 { name="Keyboard"; version="0.1.3"; sha256="1yfcn1r0zngc1nlj5axqps8an66p1q1qmxwagxq2q15d9qipb5wh"; depends=[ggplot2 Iso Rcpp]; }; KingCountyHouses = derive2 { name="KingCountyHouses"; version="0.1.0"; sha256="17l415v290lm99rsifpk6324mm1sk79ns4cvjkyh9ibj8n7l44c1"; depends=[]; }; - Kmedians = derive2 { name="Kmedians"; version="0.2.0"; sha256="1cyvmlyg44d8pyx3w9z02xkkr4zbqlnlfzix660bqnihs3ss6fhk"; depends=[capushe doParallel foreach genieclust ggplot2 Gmedian mvtnorm reshape2]; }; + Kmedians = derive2 { name="Kmedians"; version="1.2.0"; sha256="10akh0jbnk7hrgqp414p66ddlhs6rdgd1ifjx18wpnfn4c81xcnj"; depends=[capushe doParallel foreach genieclust ggplot2 Gmedian mvtnorm reshape2]; }; KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; KneeArrower = derive2 { name="KneeArrower"; version="1.0.0"; sha256="1blmim4l7375psa9c3wbpksywj5nfbawly4001n6311wcv4dybl5"; depends=[signal]; }; KnockoffScreen = derive2 { name="KnockoffScreen"; version="0.3.0"; sha256="01r04d9ha9l5pkz3lwdcb5x5qqwk8vil9avnbnfn76wg63mdfhbk"; depends=[bigmemory CompQuadForm data_table irlba Matrix seqminer SPAtest]; }; @@ -2451,7 +2465,7 @@ in with self; { LEANR = derive2 { name="LEANR"; version="1.4.9"; sha256="053xy13ys5hibafdnbkwqdk36hw7dhanp4frfacpfpn5f9nfh95r"; depends=[foreach igraph]; }; LEAP = derive2 { name="LEAP"; version="0.2"; sha256="1yrhanxvr7krvllqzv17qkc4wvmd7mgl57am8sn53773dbfipfc4"; depends=[]; }; LEGIT = derive2 { name="LEGIT"; version="1.4.0"; sha256="1ynzm630c3wl8y9j058qgdkss5ngmmylhdw13032v53pss0vwlx3"; depends=[boot doSNOW foreach formula_tools glmnet Hmisc iterators lme4 pROC RColorBrewer snow]; }; - LFApp = derive2 { name="LFApp"; version="1.3"; sha256="0jyzn5k1h629ybx8f09vsnvdmc2qbigaqy6rrcica2sh5if2b4w4"; depends=[DT EBImage fs ggplot2 mgcv shiny shinyFiles shinyjs shinyMobile shinythemes]; }; + LFApp = derive2 { name="LFApp"; version="1.3.1"; sha256="1vvlf3bwxkyl9gyzswc4wd201pav1q2hfbhwmiic4j4d8azsd2r8"; depends=[DT EBImage fs ggplot2 mgcv shiny shinyFiles shinyjs shinyMobile shinythemes]; }; LFDR_MLE = derive2 { name="LFDR.MLE"; version="1.0.1"; sha256="0ykcd24w71zxb53nch041g7xh83gmg1ia3sysdpn0yzkhm0w7cdl"; depends=[]; }; LFDR_MME = derive2 { name="LFDR.MME"; version="1.0"; sha256="1ln0s3ki37cz1a7r96xn0zqw42im7fcanmz2vjk5zycshb423y22"; depends=[]; }; LFDREmpiricalBayes = derive2 { name="LFDREmpiricalBayes"; version="1.0"; sha256="1imw3djmbpdyplv9dmdzzirp9imk88j0kcxcyfh8yr9ywgd77x6b"; depends=[matrixStats R6]; }; @@ -2498,7 +2512,7 @@ in with self; { LRTH = derive2 { name="LRTH"; version="1.3"; sha256="08vakwb7ca7956gifynzijka441yyx0wd5bq5jfhz56lzcxgfb99"; depends=[]; }; LRTesteR = derive2 { name="LRTesteR"; version="1.0.1"; sha256="1paglzznfcmkz9lk8smnbf84q3gdq1qdkn6p9bgydfj735hghkii"; depends=[rlang statmod]; }; LRcontrast = derive2 { name="LRcontrast"; version="1.0"; sha256="0fs06p853r42nws2camvs87py39hb1ssxhfm6d5n9kkq81snfx4q"; depends=[DoseFinding]; }; - LS2W = derive2 { name="LS2W"; version="1.3.5"; sha256="1lckwdc9jfnx5plslh72inkssnck217lrrqyfpm8zgbd47c3iwa0"; depends=[MASS wavethresh]; }; + LS2W = derive2 { name="LS2W"; version="1.3.6"; sha256="0qsrf9x45z0waiv10fh0a8rw0zyr5raj6l832yhq76vd9gjfpn9i"; depends=[MASS wavethresh]; }; LS2Wstat = derive2 { name="LS2Wstat"; version="2.1-4"; sha256="1y5q5sqzx3iwxdmxf6yz5c3hbw7sihxgr8sibr0v8s9dc6r4a2sf"; depends=[LS2W matrixStats spdep]; }; LSAfun = derive2 { name="LSAfun"; version="0.6.3"; sha256="1jsn3la2qfnvb5z2abx567zp8wrz5122ifgfzibw6fag6s3kl9ym"; depends=[lsa rgl]; }; LSAmitR = derive2 { name="LSAmitR"; version="1.0-3"; sha256="1c2i9wy72v9923ngkipwmc49nc6r3znibadgffzkhci583ib55ym"; depends=[Hmisc lme4]; }; @@ -2514,12 +2528,12 @@ in with self; { LSTS = derive2 { name="LSTS"; version="2.1"; sha256="0pxcw5awm6fr6v1n8gd7yap0y1mba9khwgq27qlv9h2kmrzbr3hp"; depends=[ggplot2 patchwork Rdpack scales]; }; LSVAR = derive2 { name="LSVAR"; version="1.2"; sha256="0lhx9a5l3s2c5isd3fhvxxfdazdxddpkg07hk4rckvhmxln7j1dj"; depends=[igraph mvtnorm pracma]; }; LSWPlib = derive2 { name="LSWPlib"; version="0.1.0"; sha256="1z4lcpmbm3wdzbi04flvspkimk4jfhjqi5pd0ab4pbb0ii1z26hs"; depends=[waveslim wavethresh]; }; - LSX = derive2 { name="LSX"; version="1.1.3"; sha256="0769g5w67549076b2rck7r46gg4jjdbk024qvcczdigr7cshzq39"; depends=[digest ggplot2 ggrepel irlba locfit Matrix proxyC quanteda quanteda_textstats reshape2 rsparse RSpectra rsvd stringi]; }; + LSX = derive2 { name="LSX"; version="1.2.0"; sha256="0imghgi95rdsxjfm4w2i6n8hb5p6y2dsdls0cw56hwlxcv5p2b4l"; depends=[digest ggplot2 ggrepel irlba locfit Matrix proxyC quanteda quanteda_textstats reshape2 rsparse RSpectra rsvd stringi]; }; LTASR = derive2 { name="LTASR"; version="0.1.0"; sha256="00l04zljpy9xjg3zpfchlwchmls1vgjfnjzyj016xvv3iivl9w3b"; depends=[dplyr knitr lubridate magrittr purrr readr rlang stringr tidyr XML zoo]; }; LTPDvar = derive2 { name="LTPDvar"; version="1.2.1"; sha256="0sdsdx71mpian7gfw7brkzyjjr7bai7dsdifwnib3jpq9p7w7n84"; depends=[]; }; LTRCforests = derive2 { name="LTRCforests"; version="0.5.5"; sha256="0f0am4wydk4wqiwjzxj2ibdkp5sd47qam4218nn0489knkvas3s7"; depends=[ipred partykit prodlim survival]; }; LTRCtrees = derive2 { name="LTRCtrees"; version="1.1.1"; sha256="1k16m2fpwn8m4dvm1b82srf3bgkvkwf6kcjpwjgkdappifc7p5m8"; depends=[icenReg Icens interval inum partykit rpart survival]; }; - LUCIDus = derive2 { name="LUCIDus"; version="2.2"; sha256="02dnhswmddyqq5vhmm7wfn76h4i8id2gfcfmc1cpclwyy006srb9"; depends=[boot glasso glmnet jsonlite mclust mix networkD3 nnet progress]; }; + LUCIDus = derive2 { name="LUCIDus"; version="2.2.1"; sha256="00qzx94hwkhm5yszkx1wkj592img5n504ybld272x0wps2bk6snp"; depends=[boot glasso glmnet jsonlite mclust mix networkD3 nnet progress]; }; LVGP = derive2 { name="LVGP"; version="2.1.5"; sha256="03sd777s16nv04ikn9b3rj67ad6n4bwi0rycc7wqdnq0dx6xgniy"; depends=[lhs randtoolbox]; }; LW1949 = derive2 { name="LW1949"; version="1.1.0"; sha256="147ymp7j98ihp1dcz3p5v9ar6h767phjdnga5q5vf1wwa2mxawg7"; depends=[MASS mgcv plotrix]; }; LWFBrook90R = derive2 { name="LWFBrook90R"; version="0.5.0"; sha256="057pacicjc87g12d44mfqm9vmk10lwsxkil51bp05ixxcqpp4dp1"; depends=[data_table doFuture foreach future iterators parallelly progressr vegperiod]; }; @@ -2530,17 +2544,18 @@ in with self; { LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.3.1"; sha256="1wdfcqjzjc0vwgzv85dfny2r3gsi26wmk85s75bz6hbnwp836sav"; depends=[data_table maptools rgdal rgeos sp spdep tmap]; }; LagSequential = derive2 { name="LagSequential"; version="0.1.1"; sha256="1i8h4acfx21r0kxbg4i0k48kvhwy2abri191wp4b22amhz4vqyyd"; depends=[]; }; Lahman = derive2 { name="Lahman"; version="10.0-1"; sha256="0k8vwcqnkp24n3micwwc63lagpll1np749az2imj4zyyhd8hyq7n"; depends=[dplyr]; }; + LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.5.5"; sha256="09j4k5r441jpbxv9x6j9j5mlcl7yh2ydhfy55wx614wdlv862jn9"; depends=[plyr rLakeAnalyzer]; }; LambertW = derive2 { name="LambertW"; version="0.6.7-1"; sha256="0cdrq2nrvji8l5blswkffymm7cbjk5jzzx16js2a516cm3gjwxk4"; depends=[ggplot2 lamW MASS RColorBrewer Rcpp reshape2]; }; Landmarking = derive2 { name="Landmarking"; version="1.0.0"; sha256="1gkfv1xcjkbh417kv9dkflfg6agvgrd893v8ams25c2pazfmrmnz"; depends=[dplyr ggplot2 mstate nlme pec prodlim riskRegression survival]; }; Langevin = derive2 { name="Langevin"; version="1.3.1"; sha256="0sg3way9hlk875dfwbby59qm5dxwq7d763a0xjgjwaygpwqc83kz"; depends=[Rcpp RcppArmadillo]; }; LaplaceDeconv = derive2 { name="LaplaceDeconv"; version="1.0.4"; sha256="0n56cmrb536j1vmfizzag1x8wm68c2znpclwbdl8qraqzp8rmffx"; depends=[orthopolynom polynom]; }; LaplacesDemon = derive2 { name="LaplacesDemon"; version="16.1.6"; sha256="1dsfp65cg06f25zjzd5ib4qyn1alfhbhpgyvpcw5n6bszn13idap"; depends=[]; }; - LassoBacktracking = derive2 { name="LassoBacktracking"; version="1.0"; sha256="0waz4apjvgwn3ss7mqpndz5m9n7cpmhb3s2ngds04v0amprblddv"; depends=[Matrix Rcpp]; }; + LassoBacktracking = derive2 { name="LassoBacktracking"; version="1.1"; sha256="0xd9y11k1wqmmjb8jjws6ivgcr2x6n7ra27d7mpa3adbvyxzj8dl"; depends=[Matrix Rcpp]; }; LassoGEE = derive2 { name="LassoGEE"; version="1.0"; sha256="1zascnl9hihw0gx2ssmdiv8gcp2672kz9vmsp5vrc2wr9cdcdjz3"; depends=[caret MASS mvtnorm PGEE Rcpp RcppArmadillo SimCorMultRes]; }; LassoNet = derive2 { name="LassoNet"; version="0.8.3"; sha256="02m0g078wg9ka3ck92nrpqrm3msw1m7r8k43brcaiffqwhky99vy"; depends=[Rcpp]; }; LassoSIR = derive2 { name="LassoSIR"; version="0.1.1"; sha256="0ap8335ms12nsc7jvd48244zya54w05wj91qkhb0i63730r508c3"; depends=[glmnet]; }; Laterality = derive2 { name="Laterality"; version="0.9.4"; sha256="1p91xnqmiy232i18masqgly5wcp8zzx8kl8y5v0ra6548np31qmf"; depends=[ade4]; }; - LatticeDesign = derive2 { name="LatticeDesign"; version="2.0-4"; sha256="1spmm9gk09i5dkz6xh4qvmq9r7wd9r8a84xqh8d21678kvl2j3fc"; depends=[]; }; + LatticeDesign = derive2 { name="LatticeDesign"; version="2.0-5"; sha256="06pndvsp3v6gid46hcixh559pcmh2ckr9ss5065nbbrxhg2rf98b"; depends=[]; }; LatticeKrig = derive2 { name="LatticeKrig"; version="8.4"; sha256="153yaf0k4l5za8f13yh2mzjv66bnmi5kp6zaxq9vrisld4vdp58h"; depends=[fields spam]; }; LavaCvxr = derive2 { name="LavaCvxr"; version="1.0.2"; sha256="0gg14y8kngj3r4p4bl3ddnm9dxlklxhvnra5bmbjp1kmjhlg52rn"; depends=[CVXR Lavash pracma]; }; Lavash = derive2 { name="Lavash"; version="1.0"; sha256="0cjl8crk0rdkyzp069fk4k0sapcjmqm3q40z5mgl0i1n59kn4s07"; depends=[glmnet MASS pracma]; }; @@ -2557,8 +2572,7 @@ in with self; { LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.3.6"; sha256="088w6ks1scmzcq74v7izx8v62d99cp7iia4s02n5dj92nyn24w8x"; depends=[data_table pbapply quanteda quanteda_textstats stringdist stringi tibble]; }; LexisPlotR = derive2 { name="LexisPlotR"; version="0.4.0"; sha256="0vlm8wcaj3755cbxrfb7ybla9znd2cbklw2xwyyn6r9i4c9xsfih"; depends=[dplyr ggplot2 tidyr]; }; LibOPF = derive2 { name="LibOPF"; version="2.6.1"; sha256="01j3jzhi337dmblcm1d79i4cbp159z6k54ybpyzfasjfnp7qizz6"; depends=[]; }; - LiblineaR = derive2 { name="LiblineaR"; version="2.10-12"; sha256="0r5xbklbfgflwlmkh4i0bsdyqcjs1b4lvxr20f4fhajmkj83gqrs"; depends=[]; }; - LiblineaR_ACF = derive2 { name="LiblineaR.ACF"; version="1.94-2"; sha256="1ldkb63yhm1ki8i585wp5byx6y0kvclwy3ncacgcdqqk0p41cyi6"; depends=[]; }; + LiblineaR = derive2 { name="LiblineaR"; version="2.10-22"; sha256="1gkp9q99n8cw8s0qamlpjpnlw597fn71dsr05haiyykkqi2l5h5w"; depends=[]; }; Libra = derive2 { name="Libra"; version="1.7"; sha256="1fdxvjv3pwpvfw3hnff09s89b2lv13v3ds91lyg3yi7am820dyzg"; depends=[nnls]; }; LifeHist = derive2 { name="LifeHist"; version="1.0-1"; sha256="0q6l6rva5kxl8yzqa7ni4sdj6p4c61sdsjx8zhckzxb7xlwg2hh0"; depends=[BB Hmisc optimx]; }; LifeInsuranceContracts = derive2 { name="LifeInsuranceContracts"; version="0.0.4"; sha256="02mk8n9rpnbbcgsq7j4b7arm28q1cnwwsswbf7cicahqi1gm3m4z"; depends=[abind dplyr kableExtra lubridate MortalityTables objectProperties openxlsx pander R6 rlang rmarkdown scales stringr tidyr]; }; @@ -2583,12 +2597,12 @@ in with self; { LoBrA = derive2 { name="LoBrA"; version="1.0"; sha256="0rsxkli6xhjwy058skgij2cf3n1lcjsaw3pd51i55l2bpwlrmci6"; depends=[lawstat nlme qpdf RColorBrewer]; }; LocKer = derive2 { name="LocKer"; version="1.1"; sha256="034r6215aigb5hdm2a7cs8qw3nikjdjqnqpn1g27p3lxwfp0n3pr"; depends=[fda Matrix psych]; }; LocalControl = derive2 { name="LocalControl"; version="1.1.3"; sha256="0pi5z3i5hmb8nrqg6nyqrd4hx80xjgc5m3ra1z5r8rvjhw4mz0ik"; depends=[cluster gss lattice Rcpp]; }; - LocalControlStrategy = derive2 { name="LocalControlStrategy"; version="1.3.3"; sha256="05vggk5d0w3f9w5217c9hzy5jhwv24p2g8pcj0l6zxkhic01nbrl"; depends=[cluster lattice]; }; + LocalControlStrategy = derive2 { name="LocalControlStrategy"; version="1.4"; sha256="1slkhgac7izkmp5g203lhzvh991mnqf2qz1m0nd1k89084wvkv7b"; depends=[cluster lattice]; }; Lock5Data = derive2 { name="Lock5Data"; version="3.0.0"; sha256="1407vkcdphy5pb4sgy2ms36vjffiwg2l2753gbszm9wv2m0wrnv4"; depends=[]; }; Lock5withR = derive2 { name="Lock5withR"; version="1.2.2"; sha256="10x3i11pb4cig4pgfmw9984na5zjbg7d41y6crakiimf53ihx0c2"; depends=[]; }; - LogConcDEAD = derive2 { name="LogConcDEAD"; version="1.6-5"; sha256="0pwq1bdmn040bkwal7xsmjv2asvpyshipbglqb16h2z7yq0vwmv7"; depends=[MASS mclust mvtnorm]; }; + LogConcDEAD = derive2 { name="LogConcDEAD"; version="1.6-6"; sha256="0ig808d4zqmp4vli25g50s97b1iggrb92ih2s89w6l4vgixmrs92"; depends=[MASS mclust mvtnorm]; }; LogRegEquiv = derive2 { name="LogRegEquiv"; version="0.1.5"; sha256="1j23w3fmd2swk2mzbmsq7hy878cm7cs1li65srjc9m79az9vgr3h"; depends=[]; }; - LogicReg = derive2 { name="LogicReg"; version="1.6.4"; sha256="0517rp55c1h8hwrz3dmnkdc6wzs6ialzdpw50icadcg9q8d0h9i0"; depends=[survival]; }; + LogicReg = derive2 { name="LogicReg"; version="1.6.5"; sha256="052rrjr3d01c3k1ifw639jhifc4qqy3bnmysckb5mfylwfqn00yy"; depends=[survival]; }; LogisticCurveFitting = derive2 { name="LogisticCurveFitting"; version="0.1.0"; sha256="0b564jc3gv6lnzyxmrmbrk9pa8c6v9vbn2q68h9v0d02n58h1kbl"; depends=[]; }; LogisticRCI = derive2 { name="LogisticRCI"; version="1.1"; sha256="158rl8jjmmhnja287i29rjiq309niwbvxmzx4f9lkl83nxn4mzf7"; depends=[]; }; LongCART = derive2 { name="LongCART"; version="3.2"; sha256="05jzl4wb52fa9781pn8a3wqdnpyfrr9fv7h3xfz81xm5bl5d8mf1"; depends=[Formula magic nlme rpart survival survminer]; }; @@ -2608,13 +2622,13 @@ in with self; { M2SMJF = derive2 { name="M2SMJF"; version="1.0"; sha256="0v4sg5h3h2pjp996jspv206c8cymjpn1fg38ivaw12s7bmx8j409"; depends=[dplyr MASS]; }; MAAPER = derive2 { name="MAAPER"; version="1.1.1"; sha256="05jjfnp1hwg8pk06np6fbdfxi6zn60wzhrkzlh8jkqgwxjhgnvai"; depends=[GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges MASS Rsamtools]; }; MABOUST = derive2 { name="MABOUST"; version="1.0.1"; sha256="044k29nibl5zc32zz2696kbhrz5dafgaikgmjqznsq25p48si453"; depends=[Rcpp RcppArmadillo]; }; - MACER = derive2 { name="MACER"; version="0.2.0"; sha256="1m3p1vkhs9f42xj99gnw66wds7jsrkihg3i1qq3cr94ahlp05b4v"; depends=[ape ggplot2 httr pbapply png rentrez]; }; + MACER = derive2 { name="MACER"; version="0.2.1"; sha256="02qqcaccw671773lp1zva340fd6wqbsx9v0yxy62cbjnyh3k260r"; depends=[ape ggplot2 httr pbapply png rentrez]; }; MADPop = derive2 { name="MADPop"; version="1.1.4"; sha256="0r8c31sjn3ma6fghc0kbq27djha4321jsdrpwvl65qd74ivp305v"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; }; MAGEE = derive2 { name="MAGEE"; version="1.2.0"; sha256="0xyz4m3b09yxjlzy3j2akwpngbqjqjcbsfkn6hig4wi4lw7szc8a"; depends=[CompQuadForm foreach GMMAT MASS Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; }; MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.4"; sha256="1asr18byrgy6bkpxpmnkczgr3dam6ymf30lw6izq112krc891bg4"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; MAINT_Data = derive2 { name="MAINT.Data"; version="2.6.2"; sha256="0c2llzjhrv1jn5zna654bjgyq5q0hqwzfv9kda9mfjf20pfc34my"; depends=[GGally ggplot2 MASS mclust miscTools pcaPP Rcpp RcppArmadillo robustbase rrcov sn withr]; }; MAKL = derive2 { name="MAKL"; version="1.0.1"; sha256="0xljmnwl8v3y68xmfm5vbycsa5y5yi0p0n207hg7zjvfaf6gbfhj"; depends=[AUC grplasso]; }; - MALDIquant = derive2 { name="MALDIquant"; version="1.21"; sha256="1y1g3819ss06dry70kfhg2syddw71682qmzkcyppfsma6hhghw87"; depends=[]; }; + MALDIquant = derive2 { name="MALDIquant"; version="1.22"; sha256="05fhr7945m0qxh7f5c4ax9v2k32s4n4v4xc1dm1crk1vbzha40bv"; depends=[]; }; MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.13"; sha256="0xxdvfg9h6vl2g2wlxfmrskn8576rd958mn5jblryyqg9xbanlhr"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; MALDIrppa = derive2 { name="MALDIrppa"; version="1.1.0-1"; sha256="1gm5w614r66av6bvfiad5964hsr6hb0c03c90ck9lb251bns98wm"; depends=[lattice MALDIquant robustbase signal waveslim]; }; MAMS = derive2 { name="MAMS"; version="2.0.0"; sha256="05pnrxziwsgnhy05fac8smxcm65zxi2dl7lar2jakiamd2hxv3c2"; depends=[future future_apply mvtnorm]; }; @@ -2626,16 +2640,16 @@ in with self; { MARSANNhybrid = derive2 { name="MARSANNhybrid"; version="0.1.0"; sha256="1xs0gjdjl9c5i1i8ds9s3sq0764267h6gngkbwimfa8miq287idm"; depends=[earth neuralnet]; }; MARSS = derive2 { name="MARSS"; version="3.11.4"; sha256="10mf1vs51yqqg6s2435j84xbaxvr6wdraha07mqlr2rmprgl5a0r"; depends=[KFAS mvtnorm nlme]; }; MARSSVRhybrid = derive2 { name="MARSSVRhybrid"; version="0.1.0"; sha256="10b8d75q5hiqf8id1qsvjx379xyx4vphq5r1iwvykjaw4zxbyx65"; depends=[e1071 earth]; }; - MARVEL = derive2 { name="MARVEL"; version="1.3.0"; sha256="0016y7nycqpqaxcybgrdicp1q9kw7pbinbi54rja6npcyiz3li86"; depends=[ggplot2 scales]; }; + MARVEL = derive2 { name="MARVEL"; version="1.4.0"; sha256="1zsgj3dbqpfjv2x6xpp75n9jxf04svqffiy9gxlbxkns3clwqz5i"; depends=[ggplot2 Matrix plyr scales]; }; MASS = derive2 { name="MASS"; version="7.3-58.1"; sha256="080l4gqkaw9r4s7b0q9hda489rn24p4ma5xf4g8405qkzgif817p"; depends=[]; }; - MASSExtra = derive2 { name="MASSExtra"; version="1.1.2"; sha256="0jzzm3ahn1iisdp632hcn8lnk6hhh699jqfj6v0164qxd6487xvs"; depends=[demoKde MASS]; }; + MASSExtra = derive2 { name="MASSExtra"; version="1.2.0"; sha256="0mc5zpj2zp1gd8izyiji1hrklc4x3ixvcjxzfcs3bbhzk7qcm2n9"; depends=[demoKde MASS]; }; MASSTIMATE = derive2 { name="MASSTIMATE"; version="2.0-1"; sha256="1dvidwjw4zgflms5njbd9n85g1gbgfg6hk0fb63q5n65iyxxfmyh"; depends=[]; }; MAT = derive2 { name="MAT"; version="2.3.1"; sha256="0jr08j96agqw4hzdbk9ixdpngh60bd7w47192d0zm3byymcxpb0y"; depends=[Rcpp RcppArmadillo]; }; MATA = derive2 { name="MATA"; version="0.7.1"; sha256="0qydfp856qlmiwf3a2vs2dfk203sx8vvzrqn4hga9wi7bxdylk9f"; depends=[]; }; MAVE = derive2 { name="MAVE"; version="1.3.11"; sha256="01n204bxabbm8pcpayy2s0jvhg73r5cv0026lb3vbk0m40z02kcz"; depends=[mda Rcpp RcppArmadillo]; }; MAd = derive2 { name="MAd"; version="0.8-3"; sha256="0br099qzmzvdcx5pzb772dipyb279kgzhx6p2b7g0fp4r4bk7gbd"; depends=[]; }; MAnorm2 = derive2 { name="MAnorm2"; version="1.2.2"; sha256="0bs6x09mm8ln2c7himavm6bskdkxvx7id4dxpg20k4a5hcqpj3ab"; depends=[locfit scales statmod]; }; - MBA = derive2 { name="MBA"; version="0.0-9"; sha256="06kmrdkhwwvr3kd5w8ws6r528hhpvbhixyj98lv36kkwlx14x06g"; depends=[BH]; }; + MBA = derive2 { name="MBA"; version="0.1-0"; sha256="1bw3a8xcbjmhb3mfzblx8kpj3jiag8c95wm5g6xy52xrql2rj0vq"; depends=[BH]; }; MBAnalysis = derive2 { name="MBAnalysis"; version="0.1.0"; sha256="1hgx6lgyjbiq6y5cw720mnavll6mfrarwvhsm7pbr25q1d37jmg8"; depends=[ggplot2 ggrepel]; }; MBC = derive2 { name="MBC"; version="0.10-5"; sha256="0iks5nhk4im7l1dxgwcwi4mlnh271zfq9mrlaklpk38zakzyf2n4"; depends=[energy FNN Matrix]; }; MBCbook = derive2 { name="MBCbook"; version="0.1.1"; sha256="0jmvgyzrahnxfkwdn86k3ffk0zfbbd34ya4zmlnsmp2m9xds7lgn"; depends=[MASS mclust mvtnorm Rmixmod]; }; @@ -2669,7 +2683,6 @@ in with self; { MCPtests = derive2 { name="MCPtests"; version="1.0.1"; sha256="1lzlvzw60fb0mllbl0dx8s30zigzbl9shjas629syb9yw55ypxa2"; depends=[doParallel foreach SMR writexl xtable]; }; MCS = derive2 { name="MCS"; version="0.1.3"; sha256="1kiz1jq1bm2n8f33nsybp5jfrzzl9xbsi3m9l8818ybmph99xms6"; depends=[]; }; MCSim = derive2 { name="MCSim"; version="1.0"; sha256="1nqry41qa5c02an5fxm3y1g3w1vcqjgsy1an95i3szz1w1ndaj14"; depends=[CircStats MASS]; }; - MCTM = derive2 { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; }; MChtest = derive2 { name="MChtest"; version="1.0-3"; sha256="1b3p6ry8gkvyphakn3504ibl2x8dbhx95saild0mj0iwm3sjyspf"; depends=[]; }; MDBED = derive2 { name="MDBED"; version="1.0.0"; sha256="1r3sizb2mqd4pqjy25krwmsjfkr6cl7lkd8db5jn3hgxx3qh6sgc"; depends=[doParallel foreach ggplot2 lattice orthopolynom psych Rdpack]; }; MDFS = derive2 { name="MDFS"; version="1.3.0"; sha256="0sv6j8arfh4w333y1mp3n65bzi2kz9zrk2wpw80z5vci2489s50d"; depends=[]; }; @@ -2724,9 +2737,9 @@ in with self; { MKLE = derive2 { name="MKLE"; version="1.0.0"; sha256="0pnz99z2ms8j0acnpim0z7n7m0x6rkvzi5dhq8jhx0dnry4mznn0"; depends=[]; }; MKMeans = derive2 { name="MKMeans"; version="2.1"; sha256="1zhas96xvjyphmrs48k3nza1ayv9nfj0c760ifb57p8yk28m0bfy"; depends=[]; }; MKclass = derive2 { name="MKclass"; version="0.3"; sha256="0sw0h99k24418iqvvq247kg5558y9mgashr5amay7gbf2va79v6j"; depends=[]; }; - MKdescr = derive2 { name="MKdescr"; version="0.7"; sha256="056gp5fig8l4wgv3hzphr5q81z1zi6x88abc4kzgg8f1ljpn37xf"; depends=[ggplot2 scales]; }; - MKinfer = derive2 { name="MKinfer"; version="0.7"; sha256="1b1qwz6dwkwh0wc61j7jxkrcf5h97p56vj15zpki13lmaw779swi"; depends=[arrangements boot ggplot2 MKdescr nlme]; }; - MKmisc = derive2 { name="MKmisc"; version="1.8"; sha256="1d94vnj0ffw15gd0xfpz245y0qi7xw61qwsqan3bahskjdwrgdgl"; depends=[ggplot2 limma RColorBrewer robustbase scales]; }; + MKdescr = derive2 { name="MKdescr"; version="0.8"; sha256="0y4mg3lg94nvyvj8rns5lffd6qjw1yn6yw8kn03n94rig857amwp"; depends=[ggplot2 scales]; }; + MKinfer = derive2 { name="MKinfer"; version="0.9"; sha256="1n4qj595bi1mykhk7pc9lkgfr6qjk6c23f9iwzc6b7ijgh44a19h"; depends=[arrangements boot exactRankTests ggplot2 MKdescr nlme]; }; + MKmisc = derive2 { name="MKmisc"; version="1.9"; sha256="09kdwsfx5w3q88jbnxbaxzbzyx9fhhphqqaxn5qghhh1z2vpmy93"; depends=[ggplot2 limma RColorBrewer robustbase scales]; }; MKomics = derive2 { name="MKomics"; version="0.7"; sha256="0ck8i7ip12bb6wilmwhdrbdmf56ymm3rp6973lr1p4bc2m2kvhif"; depends=[circlize ComplexHeatmap limma RColorBrewer robustbase]; }; MKpower = derive2 { name="MKpower"; version="0.5"; sha256="1yr9yk7x8da2b8hj71v4f5c2nikljbr6ayqp004whdi2bh67v95n"; depends=[coin ggplot2 matrixTests MKdescr MKinfer qqplotr]; }; ML_MSBD = derive2 { name="ML.MSBD"; version="1.2.1"; sha256="1cpwq0vilbyz837d8k8pjipw3cwdsggbs88nwp827s4w2f1m7pap"; depends=[ape foreach]; }; @@ -2735,6 +2748,7 @@ in with self; { MLCM = derive2 { name="MLCM"; version="0.4.3"; sha256="1sz5c3wxvnyxd3bf53i8x2jw591phx2np6c6bj4cqppb98ab83f3"; depends=[]; }; MLDS = derive2 { name="MLDS"; version="0.4.901"; sha256="0zswlng1vksnx1m6ycna2hbqmzzcfpqz1wgy519fr0j87bqxks69"; depends=[MASS]; }; MLDataR = derive2 { name="MLDataR"; version="1.0.1"; sha256="0sbm79hpgxiqnqjyr5n88rhs29lkp17czz9jmhd2d5x97ncpqw9f"; depends=[caret ConfusionTableR dplyr ggplot2 OddsPlotty parsnip ranger recipes rsample varhandle workflows]; }; + MLEce = derive2 { name="MLEce"; version="1.0.1"; sha256="0m5fa2167dyprcc3agmdvfjgd0qvnnqn5y6xqm2w3rmgvilhp24r"; depends=[ggplot2 LaplacesDemon mvtnorm nleqslv reshape sirt]; }; MLEcens = derive2 { name="MLEcens"; version="0.1-7"; sha256="1kdnm5ilfn5fclry3f1d518761hykrqgjhv69kc881r2fpcfa1lv"; depends=[]; }; MLFS = derive2 { name="MLFS"; version="0.4.2"; sha256="0xrc266hz69vpfi2h59lma0wbyi1wfcw4wb3dbjbnqqwsq1hc0dz"; depends=[brnn dplyr magrittr naivebayes pscl ranger reshape2 tidyr tidyselect]; }; MLGL = derive2 { name="MLGL"; version="0.6.7"; sha256="13wg7hdvn1sp207rj0cckc98lfx62nwm4nma9qmvlvgrs7pdqk58"; depends=[FactoMineR fastcluster gglasso MASS Matrix parallelDist]; }; @@ -2773,24 +2787,23 @@ in with self; { MNP = derive2 { name="MNP"; version="3.1-3"; sha256="1kaw8kvmi1m4a7k17l6ikp89fksh6l2f53bz1h3n80da259rbhbi"; depends=[MASS]; }; MNS = derive2 { name="MNS"; version="1.0"; sha256="0if46a6rw0f2d72wnykkaa5z5b1p2c0r43il6cbwbcnnb3zd8acb"; depends=[doParallel glmnet igraph MASS mvtnorm]; }; MOCCA = derive2 { name="MOCCA"; version="1.4"; sha256="0g70s7hnmrp4sm8gx49vsijj54y4amlcy6axc4k37k4c9g4sdics"; depends=[cclust class clue cluster]; }; + MOCHA = derive2 { name="MOCHA"; version="0.1.0"; sha256="1cc817p7v9zs8nmbl7461m5hfwg0swb9y8dygljq2gfkvbxjqfb5"; depends=[AnnotationDbi assertthat BiocGenerics biovizBase data_table dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 ggrepel ggridges IRanges magrittr matrixStats MultiAssayExperiment OrganismDbi plyranges qvalue RaggedExperiment rlang S4Vectors scales stringr SummarizedExperiment tidyr wCorr]; }; MODIS = derive2 { name="MODIS"; version="1.2.9"; sha256="1272b0swij6h6xm18vpjzv0n0l47ck391wgik665bjsdky21d3sm"; depends=[bitops curl devtools mapdata mapedit maps maptools ptw raster rgdal rgeos sf sp]; }; MODISTools = derive2 { name="MODISTools"; version="1.1.2"; sha256="1br5kpkz3addnndh6740ppkg3xswpdc6fj9x776rswrjmrhazzm7"; depends=[httr jsonlite memoise raster sf]; }; MODIStsp = derive2 { name="MODIStsp"; version="2.0.9"; sha256="143jby0838xaihk37l29hqxqyk2v24qs0f20q3wc6krmz7a2i70w"; depends=[assertthat bitops data_table gdalUtilities geojsonio httr jsonlite raster sf stringr xml2 xts]; }; - MOEADr = derive2 { name="MOEADr"; version="1.1.1"; sha256="0aqkqw5ph5rvsgpasc94i264lxapr37gpjhk4rkkynph2gnvq1zx"; depends=[assertthat FNN]; }; MOFAT = derive2 { name="MOFAT"; version="1.0"; sha256="00b9ss777zr5ysh98yllyicqwgnzccmjf20g7w20zvn2blhs2np0"; depends=[SLHD]; }; MOLHD = derive2 { name="MOLHD"; version="0.2"; sha256="1lrl24x7iig15jwxigvqm3jdwnxkn948sxmywn6zi2b1a5hqz05k"; depends=[arrangements fields]; }; MOQA = derive2 { name="MOQA"; version="2.0.0"; sha256="17w4iwf38k0r2fiwqr420hkbbz1a3r89sqwnd2yn300zmaz64hpr"; depends=[gplots psych readr]; }; MOSS = derive2 { name="MOSS"; version="0.2.2"; sha256="0gjsyv74hhjknlnplc8157mmypnfy1yjrs400pz0p4744k5c8c7s"; depends=[cluster dbscan Rtsne]; }; MOST = derive2 { name="MOST"; version="0.1.2"; sha256="07y3aw2ldgq4jiz2kk2rkbqd4l298wsa5sq3xs5p21k7g33gxxnv"; depends=[]; }; MOTE = derive2 { name="MOTE"; version="1.0.2"; sha256="17y2l2rmw7fhvknyh5z09i7hd8nhamx12g00rcymp75gqkz9lzc7"; depends=[ez MBESS reshape]; }; - MPBoost = derive2 { name="MPBoost"; version="0.1-4"; sha256="1sr2cxngfm8ykr4cagx7r6fbn5g6rdpxrxzq3sz7g9acy329qzxx"; depends=[BH Rcpp]; }; + MPBoost = derive2 { name="MPBoost"; version="0.1-5"; sha256="13ijn48dg20kz0zwr0f0vp4162dv9hqnmnzzbdp30nhh0bqdbk4k"; depends=[BH Rcpp]; }; MPCI = derive2 { name="MPCI"; version="1.0.7"; sha256="1l55q09lliv0y4q1hc0jgzls47wkmsfag6b4iq5y6wrllr5wq7sa"; depends=[]; }; MPDiR = derive2 { name="MPDiR"; version="0.1-20"; sha256="1mm4mv042jr0n7z5cdaij39zrg2475p83gd3dxq6krz9yq8ii1q3"; depends=[]; }; MPGE = derive2 { name="MPGE"; version="1.0.0"; sha256="10lzkk8fhpxd1z4yp051q3k36fsvddrwssv7nn03r2bkp6q8rpzb"; depends=[car purrr]; }; MPI = derive2 { name="MPI"; version="0.1.0"; sha256="081yhbk3qz5935yz5n1391x3hpj8m0cbj1p81snhb9n8h0agwgv0"; depends=[doParallel dplyr foreach purrr tidyr]; }; MPLikelihoodWB = derive2 { name="MPLikelihoodWB"; version="1.1"; sha256="0xgj349jkv29ldia4lmsiwnkhrk99aqcrvyiy3si5knmi1jvx9q0"; depends=[MASS survival]; }; MPN = derive2 { name="MPN"; version="0.3.0"; sha256="0rrigkq5bkarncswv8kgvvwd1vrq5cqnb5vypa9d39q2ksqf8j3d"; depends=[]; }; - MPR_genotyping = derive2 { name="MPR.genotyping"; version="0.8"; sha256="0lsrbks7nhfnrmk8kclh09rc132j3divjxrzjfrg8zijbzkfx1pn"; depends=[qtl]; }; MPS = derive2 { name="MPS"; version="2.3.1"; sha256="08yzynznf33y7y3pf7fayks5hi3cdvzwzn8axg7aky5kvi2bfv22"; depends=[]; }; MPSEM = derive2 { name="MPSEM"; version="0.4-1"; sha256="0cq7vyyif7gxywrj420msscjf1aq427g88x8yvxf3a5a6mqapkr8"; depends=[ape MASS]; }; MPTinR = derive2 { name="MPTinR"; version="1.14.1"; sha256="0jywv5kim3vdfq0dfaxjksq8l2i6ny45rn5ibmb7ximwfjm3syp0"; depends=[Brobdingnag numDeriv Rcpp RcppEigen]; }; @@ -2810,11 +2823,11 @@ in with self; { MRTSampleSizeBinary = derive2 { name="MRTSampleSizeBinary"; version="0.1.1"; sha256="01kg6frglrhi55px2hsadjn9dbfz61hwj1q2m6jrm59b4cws0gcb"; depends=[dplyr ggplot2 Matrix]; }; MRmediation = derive2 { name="MRmediation"; version="1.0.1"; sha256="0v0kn6x4fwj35imj1fb2f2024ifb7081z4cwlhjmdxhabcy6xbx7"; depends=[fda MASS]; }; MSCMT = derive2 { name="MSCMT"; version="1.3.4"; sha256="1vh0i9nxqiy3qdnb7z7cn5kpp2jahdmaqpnv7q5650pkswhwmfpc"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; - MSCquartets = derive2 { name="MSCquartets"; version="1.1.1"; sha256="1dv6g860yxhkk6dd0sr0vvnpwb3fbpz7fvqjlcs5kcqisvcv5ya0"; depends=[ape doParallel foreach phangorn RandomFieldsUtils Rdpack zipfR]; }; + MSCquartets = derive2 { name="MSCquartets"; version="1.1.2"; sha256="1q85h3jm2llkm8dpqdxgjxzg7iwlmhx41n3hlk1ybvxw2c0jb3rd"; depends=[ape doParallel foreach phangorn Rdpack zipfR]; }; MSCsimtester = derive2 { name="MSCsimtester"; version="1.0.0"; sha256="0k04fdprwa56vm6n372lipybgq1plhmjbxvp58wqmpgzpnhcxkvd"; depends=[ape kSamples Rdpack]; }; MSEtool = derive2 { name="MSEtool"; version="3.6.0"; sha256="1hwh55fh9rab1hda6a2ks7r2bdwgy16wz4c6jrfa80ifkfki32hi"; depends=[abind dplyr ggplot2 ggrepel gridExtra Rcpp RcppArmadillo snowfall]; }; MSG = derive2 { name="MSG"; version="0.8"; sha256="178209p30fmh3c03w8iakz306h2xswcj4ffxg1s9s8md156rbj7s"; depends=[RColorBrewer]; }; - MSGARCH = derive2 { name="MSGARCH"; version="2.50"; sha256="0gq0n9v2vdsg899bic24hdp72sr39xcmc3iam4h4yx2b8bl7mxdb"; depends=[coda expm fanplot MASS numDeriv Rcpp RcppArmadillo zoo]; }; + MSGARCH = derive2 { name="MSGARCH"; version="2.51"; sha256="1n8v9017p8iw9mai3yqh294v7kyj458a6vj9ma20gzd94nhyhlxh"; depends=[coda expm fanplot MASS numDeriv Rcpp RcppArmadillo zoo]; }; MSGARCHelm = derive2 { name="MSGARCHelm"; version="0.1.0"; sha256="172xpvs98b9ay44ffb8bp9k4zsjzhy92pp7bv3d1j186pqhl13ib"; depends=[forecast MSGARCH nnfor]; }; MSGLasso = derive2 { name="MSGLasso"; version="2.1"; sha256="1k17vnvzr647pwfbdxrpqcsp34iygq86wf0ns4rq8cj6q5mik1bv"; depends=[]; }; MSMwRA = derive2 { name="MSMwRA"; version="1.5"; sha256="062d37h47p3sx65k5jh8n900dfzm1mvi18ikral3ajdhy7x2cif9"; depends=[]; }; @@ -2824,7 +2837,7 @@ in with self; { MSSQL = derive2 { name="MSSQL"; version="1.0.0"; sha256="15glgn2dr1yygxps0mx68435zqc2hi4hvgr4rvgrwyxdnlm5g35y"; depends=[RODBC]; }; MST = derive2 { name="MST"; version="2.2"; sha256="0p833nyq9p0r0hy02f4sy6gv1wm9flj3dxkv73ihy8503r89bbzz"; depends=[Formula MASS partykit survival]; }; MSTest = derive2 { name="MSTest"; version="0.1.0"; sha256="09njnxfj7i3gf91qayabhadzlwszh81pznyir0fqpsns8hzbmk4p"; depends=[foreach GA GenSA lmf nloptr numDeriv pso Rcpp RcppArmadillo rlang]; }; - MSbox = derive2 { name="MSbox"; version="1.4.6"; sha256="1wlfbkjsw2bzznh6fwhfllgnj80zpfab82x43a83k3mjd41rf9f9"; depends=[crayon ggfortify ggplot2 plotly reshape2 stringr xml2]; }; + MSbox = derive2 { name="MSbox"; version="1.4.8"; sha256="1cppzy3kri2zmhyk34scffix28v1bjb0fhk51kb33amg6vz5mnj3"; depends=[crayon stringr xml2]; }; MSclassifR = derive2 { name="MSclassifR"; version="0.3.1"; sha256="14fnq5xyflx9m35lppjdlz89cmwd8dmijn449r222hvpmv68vdhw"; depends=[car caret cp4p dplyr e1071 fuzzyjoin ggplot2 glmnet limma MALDIquant MALDIquantForeign MALDIrppa mclust metap mixOmics mltools nnet performanceEstimation reshape2 statmod UBL VSURF xgboost]; }; MSclust = derive2 { name="MSclust"; version="1.0.2"; sha256="0i88179z6h2lllkbhp5jfwxnamj1n45v3i3cizzqk217ch3nfjwd"; depends=[cluster GGally ggplot2 gtools Matrix mclust mnormt mvtnorm psych]; }; MScombine = derive2 { name="MScombine"; version="1.4"; sha256="0s3gbf3s5mf00d5mkbqhd9wwnyps7qb4r3zbal8j8nsaspql9nd3"; depends=[plyr]; }; @@ -2858,12 +2871,12 @@ in with self; { MaOEA = derive2 { name="MaOEA"; version="0.6.2"; sha256="0s8jvp7821mb6xff8xwnh78mhz4qfrbk4g7sp4dfnm2ii7ah9c6b"; depends=[e1071 gtools lhs MASS nnet nsga2R pracma randtoolbox reticulate stringr]; }; MachineShop = derive2 { name="MachineShop"; version="3.6.0"; sha256="1gfwqzfmkv48d5is112qpylmmr3b1jrx8ckf2l6agijmvarf7z21"; depends=[abind cli dials foreach ggplot2 kernlab magrittr Matrix nnet party polspline progress recipes rlang rsample Rsolnp survival tibble]; }; Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; }; - MagmaClustR = derive2 { name="MagmaClustR"; version="1.0.1"; sha256="0gf0xlsh5wkvbp331z7c55ypfkg9rmmakykbqliswiyrfgbczk9g"; depends=[broom dplyr ggplot2 magrittr mvtnorm Rcpp rlang tibble tidyr tidyselect]; }; MainExistingDatasets = derive2 { name="MainExistingDatasets"; version="1.0.1"; sha256="1828pj76122z1aahrv82il05wy7lz87s8vwn024150cvsqh3lgrj"; depends=[config dplyr DT glue golem htmltools htmlwidgets magrittr openxlsx pkgload processx rlang sf shiny spData tidyr tmap tmaptools]; }; MajKMeans = derive2 { name="MajKMeans"; version="0.1.0"; sha256="1zphrxyx3jd6rnh1y1qnc6bip34kfqk1a5ms4ps39gfngznh482m"; depends=[MASS]; }; MakeYourPalette = derive2 { name="MakeYourPalette"; version="0.1.3"; sha256="0snawchc2rkxglmcg093gik3gwasn4pxqsvz6rm2r1gkbwbazmh4"; depends=[prismatic raster rgdal]; }; MakefileR = derive2 { name="MakefileR"; version="1.0"; sha256="1pfjic2lsar8ghbb6byr4rqrs30qrgfih092z4rxdpsiwkk3y7l1"; depends=[magrittr]; }; ManagedCloudProvider = derive2 { name="ManagedCloudProvider"; version="1.0.0"; sha256="0glhx9ylpx2s8mi711gblapw6qnv80nd4wahph65g6ddngvmgv73"; depends=[adagio DockerParallel jsonlite]; }; + MandalaR = derive2 { name="MandalaR"; version="0.1.0"; sha256="13shj6r416cz11qlwrha468gx1y76vx28xyhap3k0c0b2jxn699b"; depends=[ggplot2]; }; Mangrove = derive2 { name="Mangrove"; version="1.21"; sha256="1qf3fjzf0sb6fqbfdbxwbw6wah3gg2qran4mgg13hcmk4n3j0hxp"; depends=[]; }; ManifoldOptim = derive2 { name="ManifoldOptim"; version="1.0.1"; sha256="0vp064ayniwqc8wck9n5y7s5y22x2jq55n8l5q4vjb8q7idvy6xd"; depends=[Rcpp RcppArmadillo]; }; ManlyMix = derive2 { name="ManlyMix"; version="0.1.14"; sha256="0zpcc74965n435d4fah41r9nz0kjyn46hkjl1s0kvlllqj6n69wg"; depends=[]; }; @@ -2882,11 +2895,11 @@ in with self; { MasterBayes = derive2 { name="MasterBayes"; version="2.58"; sha256="0s6zry5nhwg3zbfgqd6zdrys0irf6336gfcba77z7xwssd4gh9j5"; depends=[coda genetics gtools kinship2]; }; MatManlyMix = derive2 { name="MatManlyMix"; version="1.1.1"; sha256="1d2vd5b9lirdybjclxh0nn4mghq64qjj4l8vnj95cni5pfa18a2c"; depends=[]; }; MatSkew = derive2 { name="MatSkew"; version="0.1.5"; sha256="019v2b1r0bvw84xs50smjb3jdz7gd2adz5d84xd8zq43lnml96d1"; depends=[]; }; - MatchIt = derive2 { name="MatchIt"; version="4.4.0"; sha256="01kc7qr9clps1ls033hl9fpfwf3nr45mr1cwhfd855r0jzkrd6p7"; depends=[backports Rcpp RcppProgress]; }; + MatchIt = derive2 { name="MatchIt"; version="4.5.0"; sha256="0wk1gjhdmf8wl92k3b9xgjfxxn5sqgddn9gcywch96237q8vlpr3"; depends=[backports Rcpp RcppProgress]; }; MatchLinReg = derive2 { name="MatchLinReg"; version="0.8.1"; sha256="1spkjpm4pviqv52nknhww1vcjc61sgsfsvp0ilpp4srh0ykc8ihh"; depends=[Hmisc Matching]; }; MatchThem = derive2 { name="MatchThem"; version="1.0.1"; sha256="1g3vzbxrbmgmxlnn6i2i1wdk949i547ywgxcw05na71kc1nvwvfd"; depends=[MatchIt mice rlang survey WeightIt]; }; - Matching = derive2 { name="Matching"; version="4.10-4"; sha256="1ssgcq4n3sm2j3xbclfqqhkbs8i320yn7d8g69aymv28q67kh2ky"; depends=[MASS]; }; - Matrix = derive2 { name="Matrix"; version="1.5-1"; sha256="0pap6pb0is2s02l43y982p7banwi844bjpgbcgf6fb8pb01vlzam"; depends=[lattice]; }; + Matching = derive2 { name="Matching"; version="4.10-8"; sha256="16m4mmlvyslnn77idragbjf2ygmd7r6kwrgwkwcfnphzvlnjwhal"; depends=[MASS]; }; + Matrix = derive2 { name="Matrix"; version="1.5-3"; sha256="03g0zqkbaa1k52i0d0yyn7vclmg93hdqaid48sbc1ccpvi70ywjf"; depends=[lattice]; }; MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.10.0"; sha256="1na3y1crlj57c1xq9ja3v94cx2dr0myrlx9bxvhhwss3q3r1lgby"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.3"; sha256="10r6h5bidj44kfbwiml9pkysbikqphfb21ig61qnx0qa12xcl6l8"; depends=[]; }; MatrixExtra = derive2 { name="MatrixExtra"; version="0.1.13"; sha256="1s8y8zp9k7rsnyi1d8ghi4brjbbdwxijc9chhla24qm3fi6np33a"; depends=[float Matrix Rcpp RhpcBLASctl]; }; @@ -2900,8 +2913,8 @@ in with self; { MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.4.13"; sha256="1jd3lnd5zdfipg5l8f7y52vy1pa9mfkjnspk50z881557k6pwmnf"; depends=[devtools digest dplyr futile_logger lubridate magrittr purrr rlang rvest stringr tibble xml2]; }; MazamaLocationUtils = derive2 { name="MazamaLocationUtils"; version="0.3.8"; sha256="1vjbbbdq3nlgp7fdzrsb568v37s3iszcm6c93yz2ckgqxy7m4sli"; depends=[dplyr geodist httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaSpatialUtils readr rlang stringr tidygeocoder]; }; MazamaRollUtils = derive2 { name="MazamaRollUtils"; version="0.1.3"; sha256="1433xy64n3wpxg9d0jlwdfp8hlvmq0ndg3fv6kfxq3pasm600jgc"; depends=[Rcpp]; }; - MazamaSpatialPlots = derive2 { name="MazamaSpatialPlots"; version="0.1.2"; sha256="1gkxq6lnvdv24nvc34fmxz4qilzljxcls1lq29a5ag67dffz7kcj"; depends=[dplyr magrittr MazamaCoreUtils MazamaSpatialUtils rlang sf sp tmap]; }; - MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.7.6"; sha256="07qr6cwa29brsp567vjhfv8pkqijxhhz98bxvagrpjj5gbx1179s"; depends=[cleangeo countrycode dplyr magrittr MazamaCoreUtils rgdal rgeos rlang rmapshaper sp stringr]; }; + MazamaSpatialPlots = derive2 { name="MazamaSpatialPlots"; version="0.2.0"; sha256="1i8gqywl2w7zjl1m5qw8vmy7wn44cp8fkiw4m2iwvf4s9q43xjnc"; depends=[dplyr magrittr MazamaCoreUtils MazamaSpatialUtils rlang sf tmap]; }; + MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.8.1"; sha256="1pw4hgd4bjzm0vbkry6ajndlb337x257amr5zwxr8zaal4j0zrgq"; depends=[countrycode dplyr magrittr MazamaCoreUtils rlang rmapshaper sf stringr]; }; MazamaTimeSeries = derive2 { name="MazamaTimeSeries"; version="0.2.8"; sha256="0png8yfnn5wch04c9krxnvy4bbpz0syrir8i536giw6fbk7hfy1y"; depends=[dplyr geodist lubridate magrittr MazamaCoreUtils MazamaRollUtils rlang stringr]; }; Mcomp = derive2 { name="Mcomp"; version="2.8"; sha256="1wz5fr3dhxn4s0qvxm2mzq9dbz3x0vgh6pixjrgk9d4i9w2p7s60"; depends=[forecast ggplot2]; }; MeTo = derive2 { name="MeTo"; version="0.1.1"; sha256="0zn63qljsw3bnxpj823lrkcl3rnxksjsaxzn6dbddw41j80mmfa4"; depends=[lubridate]; }; @@ -2910,11 +2923,12 @@ in with self; { MedSurvey = derive2 { name="MedSurvey"; version="1.1.1.3.0"; sha256="11lkli2arl5w2aizzd93fb6xsy30000nf3qc08qirrm07rwypaly"; depends=[lavaan Matrix survey]; }; MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; Mediana = derive2 { name="Mediana"; version="1.0.8"; sha256="0j1ikc2iaxl70134v0gijj2i2g0xgjafvn8rc108r9fhm8rpw564"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; }; - MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.9"; sha256="0vvmp6bf5ka8ivi1z6rl6rcvbks14c7g1f0sisqqjwsza3fi5s9m"; depends=[devEMF doParallel doRNG flextable foreach lme4 lmerTest MASS mvtnorm officer pbkrtest Rcpp RcppEigen RcppNumerical rootSolve shiny shinydashboard shinyMatrix]; }; + MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.10"; sha256="04say70f7wsa245apak44r7jz2gp2vp3zppg1sqs5pxn9009ah9m"; depends=[devEMF doParallel doRNG flextable foreach lme4 lmerTest MASS mvtnorm officer pbkrtest Rcpp RcppEigen RcppNumerical rootSolve shiny shinydashboard shinyMatrix]; }; Mega2R = derive2 { name="Mega2R"; version="1.0.9"; sha256="1wpn03csv88958ppg4idwidcdvr1gf3bps4c0sf5z3ri78awb28f"; depends=[AnnotationDbi DBI famSKATRC gdsfmt GenomeInfoDb kinship2 pedgene Rcpp RSQLite SKAT]; }; MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.6.0"; sha256="0qf2kb04ia5rdasvs34ziwyan5k327gi45frjkhmi5qsz64z51bg"; depends=[ggplot2 glmnet iterpc knitr Matrix plotly quantreg rjson rmarkdown robustbase]; }; Mercator = derive2 { name="Mercator"; version="1.1.2"; sha256="1iixn75vp66gbhllppm8xaxxqg8qbp4m5db8qznnysm8gn5wcl7f"; depends=[ClassDiscovery cluster dendextend flexmix igraph KernSmooth kohonen Polychrome Rtsne Thresher umap]; }; MeshesTools = derive2 { name="MeshesTools"; version="1.0.0"; sha256="0vr7l9g53h1rxyhn8c8l3hmbsh7c2cfl3jvlrnm2jhpfcsp8851g"; depends=[BH data_table gmp PolygonSoup Rcpp RcppCGAL RcppEigen rgl Rvcg]; }; + Mestim = derive2 { name="Mestim"; version="0.1.0"; sha256="1alav9xihq7mdz9cd24sh5nkblh8nm5h2zsrqizqg3w4dw288dgj"; depends=[]; }; MetAlyzer = derive2 { name="MetAlyzer"; version="0.1.0"; sha256="1mqc2037q71n1k7ncym52vn0cc5ndsxq4r87k492lp1b3i7h1wi3"; depends=[agricolae dplyr openxlsx rlang tibble tidyr]; }; MetBrewer = derive2 { name="MetBrewer"; version="0.2.0"; sha256="0x51g5z9cdl043rna9qh4cj16qxahb6ccj9d8rr9d43d860jigp7"; depends=[ggplot2]; }; MetGen = derive2 { name="MetGen"; version="0.5"; sha256="00yzaicrpwfnxi5mdzwx1ai721vczkkf2yl50q9wwpxhmfx0xbbh"; depends=[chron glmnet MASS]; }; @@ -2941,9 +2955,10 @@ in with self; { MethodCompare = derive2 { name="MethodCompare"; version="0.1.2"; sha256="1nxr2fgmfixjkdparavi156qqqchjwaxpjk9i2xgc1yhp1p01pll"; depends=[nlme]; }; Metrics = derive2 { name="Metrics"; version="0.1.4"; sha256="0fh8qbjlwzagh272lgwr4bxcqcjb1qpz53mgs8rzlvncax6nk5bk"; depends=[]; }; MetricsWeighted = derive2 { name="MetricsWeighted"; version="0.5.4"; sha256="1hv2bgd64km303l09kva0pa9wx95f82qa9c4zl8nrmfhi2dvckqh"; depends=[]; }; + MfUSampler = derive2 { name="MfUSampler"; version="1.1.0"; sha256="0jzql2hs335gd4kwj18yi8ygsi3190wacfs3mgrmshdjb2frkh15"; depends=[ars coda dlm]; }; MiDA = derive2 { name="MiDA"; version="0.1.2"; sha256="144gxsxqljzskxsw5k0y69ix0pxlfvyyznxkjpf2ng4l47pg11z5"; depends=[caret gbm genefilter limma preprocessCore pROC SQN]; }; MiMIR = derive2 { name="MiMIR"; version="1.4"; sha256="0gy4mp4dc25jzks62rw1w3xwrr4zs4q4cix2mlcmhh807km0g3xf"; depends=[caret dplyr DT foreach fs ggplot2 heatmaply matrixStats plotly pROC purrr shiny shinycssloaders shinydashboard shinyFiles shinyjs shinyWidgets survival survminer]; }; - MiRKAT = derive2 { name="MiRKAT"; version="1.2.1"; sha256="1ypxs6p8jzd2y5rxbfrr2z1xib6im9i58wvcz4cqcgpw298w7ard"; depends=[CompQuadForm GUniFrac lme4 MASS Matrix mixtools PearsonDS permute quantreg survival]; }; + MiRKAT = derive2 { name="MiRKAT"; version="1.2.2"; sha256="1ia5by9gnm9lbflp2lcqm04z3z1jh7h33p238k8ycypbbx2yy12i"; depends=[CompQuadForm GUniFrac lme4 MASS Matrix mixtools PearsonDS permute quantreg survival]; }; MiRNAQCD = derive2 { name="MiRNAQCD"; version="1.1.2"; sha256="1alpa7xsk669rsh0s7kjdnk1ymlfm81rw011pk29fi7p2jc505iv"; depends=[ggplot2 pROC]; }; MiRSEA = derive2 { name="MiRSEA"; version="1.1"; sha256="0jpl6ws5yx1qjzdnip9a37nmvx81az4cbsjm57x613qjpwmg6by3"; depends=[]; }; MiSPU = derive2 { name="MiSPU"; version="1.0"; sha256="1l6q0fm5z5i6gigr940h8kc5rka08psmhcprp8grmsxk3qy2kply"; depends=[ape aSPU cluster Rcpp RcppArmadillo vegan]; }; @@ -2967,7 +2982,6 @@ in with self; { MittagLeffleR = derive2 { name="MittagLeffleR"; version="0.4.1"; sha256="1qlz418im27v7q3xk09a2w3zdx7ky5imcyi3kpg1s3bz5zx57p2f"; depends=[stabledist]; }; MixAll = derive2 { name="MixAll"; version="1.5.1"; sha256="1jsh29ygy1n7lbz93ks725li9hnvfa0kp1qik13m72nmgw7g7q5a"; depends=[Rcpp rtkore]; }; MixGHD = derive2 { name="MixGHD"; version="2.3.7"; sha256="0l1qivl9a5b8rayg9srxlgkk4wilv2m9yw4lsca29s5wd3wpyksv"; depends=[Bessel cluster e1071 ghyp MASS mixture mvtnorm numDeriv]; }; - MixMAP = derive2 { name="MixMAP"; version="1.3.4"; sha256="0gxghym5ghbyxf589hda2fhv5l3x5jvm6i40x5xdwx4hadcn8k9a"; depends=[lme4]; }; MixMatrix = derive2 { name="MixMatrix"; version="0.2.6"; sha256="007vx59v5h3pfawg6slqgbs3b8dvbhcfh4cvasfydidiiyaggjdc"; depends=[CholWishart Rcpp RcppArmadillo]; }; MixOptim = derive2 { name="MixOptim"; version="0.1.2"; sha256="14blyb1dqbdb14rby4nrggpqdx6b43lbb2xwi3059biq9mrj3a2x"; depends=[desirability ggplot2 patchwork rlang]; }; MixRF = derive2 { name="MixRF"; version="1.0"; sha256="1av1wx7wmfc3z8a4bc6g3i3b807nc28n3s2rs3yh0rcwq1pfl0ir"; depends=[doParallel foreach lme4 randomForest]; }; @@ -2991,7 +3005,7 @@ in with self; { MoTBFs = derive2 { name="MoTBFs"; version="1.4.1"; sha256="03c1k5vvswlhbsivw6yznw1v0cdl8avs514iaa2v2994j2yk40j6"; depends=[bnlearn ggm lpSolve Matrix quadprog]; }; MobileTrigger = derive2 { name="MobileTrigger"; version="0.0.31"; sha256="1zbnxdxh6gr4sgpi10i0pnd85f7i842105jgjswacziqamby6mcy"; depends=[caret ggplot2 kableExtra knitr mailR plyr XML yaml]; }; ModEstM = derive2 { name="ModEstM"; version="0.0.1"; sha256="136g7rdphprx5b2xmb4jnixaam23g78m3fyfwz3mfx1w23ajf4r1"; depends=[dplyr rlang]; }; - ModStatR = derive2 { name="ModStatR"; version="1.3.1"; sha256="16mfggplpmjz2kspfa99q4gbm4avm306d83n8hiki382094li1ni"; depends=[boot ellipse gsl hypergeo jmuOutlier]; }; + ModStatR = derive2 { name="ModStatR"; version="1.3.2"; sha256="18xsdflns5w5p5aqxmjh8xcnh13r5wy1m4skm257r3mg1d5b2agw"; depends=[boot ellipse gsl hypergeo jmuOutlier]; }; ModTools = derive2 { name="ModTools"; version="0.9.4"; sha256="111rhdw917rynwsh6l6nsma5pjyi3ix9gjy5fx620d6ywcq7b227"; depends=[AER C50 car class DescTools e1071 lattice lmtest MASS naivebayes NeuralNetTools nnet pROC pscl randomForest relaimpo robustbase rpart rpart_plot sandwich survival]; }; Modalclust = derive2 { name="Modalclust"; version="0.7"; sha256="0ymzdxp6rh6baih1xm6kj8l8jxjclvnmq0gfp38cl8lpskspb26x"; depends=[class mvtnorm zoo]; }; ModelMatrixModel = derive2 { name="ModelMatrixModel"; version="0.1.0"; sha256="0w8j32b2yw7x8lr1a9bgs4ylxfsxw8m06q7xpgsiz6sjicspc714"; depends=[Matrix]; }; @@ -3011,7 +3025,7 @@ in with self; { MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.6"; sha256="1jwq3by8zfy6sbzahcj5l0vicqn7yyqpb7xhfsaymfspm7xyq6pj"; depends=[abind codetools reshape rlecuyer snow snowfall]; }; MonteCarloSEM = derive2 { name="MonteCarloSEM"; version="0.0.5"; sha256="1yqqvbj53111wlmi9c8xg7yylgasl97mn5bx0w5zkmnx0xvq004i"; depends=[lavaan Matrix]; }; Morpho = derive2 { name="Morpho"; version="2.10"; sha256="039gnlfgwi5qvffpx0b9v7chhj9acrnxybm56ssam5znri3wbqyw"; depends=[bezier colorRamps doParallel foreach jsonlite MASS Matrix Rcpp RcppArmadillo rgl Rvcg sf]; }; - MorphoTools2 = derive2 { name="MorphoTools2"; version="1.0.0.0"; sha256="09s00spslzsf4x8i29fs0nggwa1afh772hkg7r6pvkam88p0x1y8"; depends=[ade4 candisc car class ellipse heplots MASS plot3D StatMatch vegan]; }; + MorphoTools2 = derive2 { name="MorphoTools2"; version="1.0.1.0"; sha256="096siq21z4gsyn7hhkddmxvc6n9vl2diiybfjimycrb0dh17xgy4"; depends=[ade4 candisc car class ellipse heplots MASS plot3D StatMatch vegan]; }; Morphoscape = derive2 { name="Morphoscape"; version="1.0.0"; sha256="1kmr9pf5a6lyhmzbzs8h8fvr4lhm5f9k5a1bbglw369m053rgd4c"; depends=[automap concaveman ggplot2 sp]; }; MortCast = derive2 { name="MortCast"; version="2.7-0"; sha256="1hw20wb0sl8q09vv68hid90ma2ml866kglsjf38kqky1whmihfbc"; depends=[wpp2017]; }; MortalityGaps = derive2 { name="MortalityGaps"; version="1.0.0"; sha256="0nfm8xa7gnshrl8hsvmvr3za8nbppp7f7i5h4ni204w7xwvh8jxc"; depends=[crch forecast MASS pbapply]; }; @@ -3030,7 +3044,7 @@ in with self; { MultBiplotR = derive2 { name="MultBiplotR"; version="1.3.30"; sha256="0cnn8m4yd2w0izbsvrlqgxif41554nq3hj7m169lxwxrb0csybcf"; depends=[car dae deldir dunn_test geometry GPArotation gplots Hmisc lattice MASS mirt mvtnorm optimr polycor rgl scales xtable]; }; MultEq = derive2 { name="MultEq"; version="2.4"; sha256="0x0mfmrfcjdv7v5nlakmjh2ilmgn15xgzc4qgm6djkif6565v46i"; depends=[]; }; MultIS = derive2 { name="MultIS"; version="0.6.2"; sha256="02ca1r8qfsl1b8rfawdn4xrlwhg5yab260rrsx8ckyv3v75knk8f"; depends=[cluster clv clValid dplyr foreach ggplot2 igraph ltm plyr poweRlaw RColorBrewer reshape2 rlang rmutil]; }; - MultNonParam = derive2 { name="MultNonParam"; version="1.3.7"; sha256="10a4nsgwhg2sz9byxhng9clgrqp2zqawcrhzwb8jllw38y2mg1wp"; depends=[ICSNP]; }; + MultNonParam = derive2 { name="MultNonParam"; version="1.3.8"; sha256="0j6ma63yq4nj22vqlpbid24cdva8pj2d03ym9irwx5mp70f5zk55"; depends=[ICSNP]; }; MultOrdRS = derive2 { name="MultOrdRS"; version="0.1-2"; sha256="0bra4z37njkcgah3a1k6mxcnmxq85188jywhgx3fdb1wnv5ic549"; depends=[Rcpp RcppArmadillo statmod]; }; MultSurvTests = derive2 { name="MultSurvTests"; version="0.2"; sha256="04crh4hbfhl8cr0faawv71lyabyilhxpg6i8sr9ki80982mbzcnd"; depends=[Rcpp RcppArmadillo Rdpack]; }; MultiATSM = derive2 { name="MultiATSM"; version="0.2.4"; sha256="11x6yah7a825wyycq32jpajrh4y45sss10p2w5zpavij37kn4hms"; depends=[ggplot2 hablar pracma wrapr zoo]; }; @@ -3067,7 +3081,7 @@ in with self; { Mychisq = derive2 { name="Mychisq"; version="0.1.3"; sha256="0667ldi1qm47cpdr0j7gv7c6f8s5wj7naqcgv9harrsmm4vsr4w6"; depends=[]; }; N2H4 = derive2 { name="N2H4"; version="0.8.2"; sha256="1bqkjfw14jlk3hr10g5djp358qj07c8x4xyjsrcs86zx6yq2gbda"; depends=[httr2 jsonlite magrittr purrr rvest tibble]; }; N2R = derive2 { name="N2R"; version="1.0.1"; sha256="12bv7xx6j6222qgpv6g61i68017fz0x6fjg9a9k5yhgw3zk05hpk"; depends=[Matrix Rcpp RcppEigen RcppSpdlog]; }; - NACHO = derive2 { name="NACHO"; version="2.0.0"; sha256="1nd2sxgj8yyjynn0bd6k7pq40isxycr9a5bz0g42ndm4kyd1vjva"; depends=[data_table ggbeeswarm ggforce ggplot2 ggrepel knitr rmarkdown shiny shinyWidgets]; }; + NACHO = derive2 { name="NACHO"; version="2.0.2"; sha256="1y1169r8cm5dv4sir5840y9vr78jfzym917807hydrkplr8ifh4h"; depends=[data_table ggforce ggplot2 ggrepel knitr rmarkdown shiny shinyWidgets]; }; NADA = derive2 { name="NADA"; version="1.6-1.1"; sha256="0jp4mqr77cx7q5lff84s6wb0dwjy9mi0jyhbjc5fsx50bdczc3v7"; depends=[survival]; }; NADA2 = derive2 { name="NADA2"; version="1.1.0"; sha256="0fpxcyxwjz20h5dcyijbd09msw2c0l9fd2z5schdqhhfb6ravzcl"; depends=[cenGAM coin EnvStats fitdistrplus Kendall mgcv multcomp NADA perm survival survminer vegan]; }; NADIA = derive2 { name="NADIA"; version="0.4.2"; sha256="19545sc75a82smjvvyd353wjlh3wwzhwapcrk9fkg3ffjv9p4a3n"; depends=[Amelia data_table doParallel foreach glmnet mice missForest missMDA missRanger mlr3 mlr3learners mlr3pipelines paradox rpart softImpute testthat VIM]; }; @@ -3118,7 +3132,7 @@ in with self; { NLRoot = derive2 { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; }; NMADiagT = derive2 { name="NMADiagT"; version="0.1.2"; sha256="0fskc3ldfdl17gazpfr2hixy79n7db4c1f5yl1jalhwxiabnxjwp"; depends=[coda ggplot2 imguR ks MASS MCMCpack plotrix Rdpack reshape2 rjags]; }; NMAoutlier = derive2 { name="NMAoutlier"; version="0.1.18"; sha256="0h0pxjg6ppz9zv7wcv1dka5g0f9wxk3bnwicfpsv1advcam4vmmn"; depends=[ggplot2 gridExtra MASS meta netmeta reshape2]; }; - NMF = derive2 { name="NMF"; version="0.24.0"; sha256="14yxra6in5c1md5nr75y8cdmh9pg0lxqabqflvlhgg1vbg9i2628"; depends=[Biobase BiocManager cluster colorspace digest doParallel foreach ggplot2 gridBase pkgmaker RColorBrewer registry reshape2 rngtools stringr]; }; + NMF = derive2 { name="NMF"; version="0.25"; sha256="0kdl7yz4v7pms6y2lff4x5w7pwkx54488qx0v539qmvcbxv1if98"; depends=[Biobase BiocManager cluster codetools colorspace digest doParallel foreach ggplot2 gridBase RColorBrewer registry reshape2 rngtools stringr]; }; NMFN = derive2 { name="NMFN"; version="2.0.1"; sha256="1fdrw69zz2ri6wi1kd7v960kykacjxyr37iv8q5h7kwiidl0ha76"; depends=[]; }; NMI = derive2 { name="NMI"; version="2.0"; sha256="1rxphy9rhy9zhdiz48dvl9m26x6k681lnyn39lqxs0a6jhrxg7y3"; depends=[]; }; NMMIPW = derive2 { name="NMMIPW"; version="0.1.0"; sha256="13mv6dpmlldqxkxq6kiydsfwyys5w7i8ws80a5l3377i5chdqi2c"; depends=[lava nloptr numDeriv]; }; @@ -3126,17 +3140,18 @@ in with self; { NMTox = derive2 { name="NMTox"; version="0.1.0"; sha256="1slz6bq57l3f2wqd2nhm3b7dag6vg7wy9zi5rpl7ld1yyqfb0wfp"; depends=[dplyr forcats ggplot2 gridExtra Iso tidyr]; }; NMVANOVA = derive2 { name="NMVANOVA"; version="1.1.0"; sha256="1jlqyg5vn7j8srvifjghd5a7820kadl8kbwib4qxalrfprq81h8p"; depends=[]; }; NMcalc = derive2 { name="NMcalc"; version="0.0.1"; sha256="15jf38yvyiasq6bvnv23znp64njag432f1jb9zayghsny63m3dcl"; depends=[data_table]; }; - NMdata = derive2 { name="NMdata"; version="0.0.13"; sha256="038zps1017yw6varc3dgijhakx3z2sp5hrp9k03pgp6g2ygchi6v"; depends=[data_table]; }; + NMdata = derive2 { name="NMdata"; version="0.0.15"; sha256="11nj9s7bzzhgxgniyxlwakk06xkjhw1j8lv0skgwxb1lw6nb3maa"; depends=[data_table]; }; NMproject = derive2 { name="NMproject"; version="0.6.9"; sha256="0br58m07yf5bxizz3m14rbskhracyg99gq6di9a5rgzycgs3rvg4"; depends=[crayon diffobj dplyr DT dygraphs git2r htmltools lifecycle magrittr miniUI rlang rmarkdown rprojroot rstudioapi shiny stringr tidyr usethis]; }; NNMIS = derive2 { name="NNMIS"; version="1.0.1"; sha256="1w2i4xlx249p589yqdgbx1ra406ycxw729vbk1lqadbn71m6blaz"; depends=[survival]; }; - NNS = derive2 { name="NNS"; version="0.9.2.1"; sha256="05prbxvbrkg00kj78m6i9402z1mwswh780va20dc5cm7bm4in0si"; depends=[caret data_table doParallel meboot MESS quantmod Rcpp RcppParallel Rfast rgl stringr xts zoo]; }; + NNS = derive2 { name="NNS"; version="0.9.4"; sha256="0yr9pw198wdd064lvxbnnw8nd6x94xf80im0r02kwf6b2l3zxz8g"; depends=[caret data_table doParallel meboot quantmod Rcpp RcppParallel Rfast rgl stringr xts zoo]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; NNbenchmark = derive2 { name="NNbenchmark"; version="3.2.0"; sha256="086smk3xy6p6ianw41h3gx806q7h28v1dg9d3khsrwyyf9gn8xyp"; depends=[pkgload R6]; }; - NO_PING_PONG = derive2 { name="NO.PING.PONG"; version="0.1.4"; sha256="10q5h9kafni3wlnn1gdsgd9a90km5snrjz1nr0ilafmdvw9vg6v1"; depends=[MASS MCMCglmm metafor]; }; + NO_PING_PONG = derive2 { name="NO.PING.PONG"; version="0.1.6"; sha256="1i8pwk4p43yqmk8irkmvza080sngmng0wv1yr847253a0frjg9mr"; depends=[MASS MCMCglmm metafor]; }; NORMA = derive2 { name="NORMA"; version="0.1"; sha256="193q6dwn8v7k8xq0amjpvb3v6mn7c6agqa487gvjj78dy1qz720a"; depends=[rootSolve]; }; NPBayesImputeCat = derive2 { name="NPBayesImputeCat"; version="0.5"; sha256="05zwa7hhf8p1icgdvvla0r70fgvjm7s38gp69h7wgsq8yl6vd876"; depends=[bayesplot dplyr ggplot2 Rcpp reshape2 rlang]; }; NPCD = derive2 { name="NPCD"; version="1.0-11"; sha256="107i33z4q5w2828sm0pm8234kmp1v3a2w72lmhvi0rpnjhg0x120"; depends=[BB R_methodsS3]; }; - NPCirc = derive2 { name="NPCirc"; version="3.0.1"; sha256="0hljqfyrb8r76f6lkjn0jgr15wnyqv3pc3bv23bdw0hxq574aiwc"; depends=[circular misc3d movMF plotrix rgl shape]; }; + NPCirc = derive2 { name="NPCirc"; version="3.1.1"; sha256="0qcam9n9llsblrpa2w0yj0axh79qwinz4wwbf4gvyrajfv935i8i"; depends=[Bolstad2 circular misc3d movMF plotrix Rcpp RcppArmadillo rgl shape]; }; + NPCox = derive2 { name="NPCox"; version="1.1"; sha256="09cyaj2xlad8277bw5nbdi51imhw5dr78zqks0cz3513igc262sa"; depends=[]; }; NPHMC = derive2 { name="NPHMC"; version="2.3"; sha256="0mi92rnpm96nc2ip10022qa7cjrlry9aibw8yx9xmn826bqipwir"; depends=[smcure survival]; }; NPHazardRate = derive2 { name="NPHazardRate"; version="0.1"; sha256="0na4iphva1dadz457ii8kxrhnki2asaxpbwr824rljyrldj9rcgg"; depends=[survival]; }; NPIstats = derive2 { name="NPIstats"; version="0.1.0"; sha256="0hbx2mzz1z2158c943dqfn0pq1aybj1xxy55mmvld4djr5zrlz9w"; depends=[dplyr]; }; @@ -3168,11 +3183,10 @@ in with self; { NetCoupler = derive2 { name="NetCoupler"; version="0.1.0"; sha256="1xycg179anf78kd1xfwzlmfp8igrl7k2bv105w3s2df5pd8gnpbg"; depends=[checkmate dplyr ids igraph lifecycle magrittr pcalg ppcor purrr rlang tibble tidygraph tidyselect]; }; NetDA = derive2 { name="NetDA"; version="0.2.0"; sha256="149wadsw6h2nlw8fpn1n9ami484zyzhbss5fdhc84bvcs21ivl81"; depends=[glasso]; }; NetExplorer = derive2 { name="NetExplorer"; version="0.0.2"; sha256="0k8jhl0p2dp45lx4h77r0bkcff8vn1f9gvr475cshpmyipziiwnq"; depends=[]; }; - NetFACS = derive2 { name="NetFACS"; version="0.4.0"; sha256="1g4m4iwdyfvs9cfmcagxs5j0pm223m0p73szg8np16y2rappk55m"; depends=[arrangements doParallel dplyr ggplot2 ggraph igraph magrittr patchwork picante Rfast rlang tibble tidygraph tidyr vctrs]; }; + NetFACS = derive2 { name="NetFACS"; version="0.5.0"; sha256="05lqfawirdw4fh0hawm815hjdpyli7025dz3a5fsm6jh3l906z9i"; depends=[arrangements doParallel dplyr ggplot2 ggraph igraph magrittr patchwork picante Rfast rlang tibble tidygraph tidyr vctrs]; }; NetIndices = derive2 { name="NetIndices"; version="1.4.4.1"; sha256="0zi3b9i2apfdcm85k7ah6r6ad0v6rji5gysb410vc3bgrixa03lk"; depends=[MASS]; }; NetInt = derive2 { name="NetInt"; version="1.0.0"; sha256="08vmqjai1lakbb4zs895fn0hn3gw2q7zsdkx6yxidfff5qn4mq6b"; depends=[mathjaxr]; }; - NetLogoR = derive2 { name="NetLogoR"; version="0.3.11"; sha256="0pppcpij4wn1gig7lyh122x52dx8x1dy98v5cphmrap8mpj4x7h2"; depends=[abind CircStats data_table matrixStats quickPlot raster sf sp SpaDES_tools]; }; - NetMix = derive2 { name="NetMix"; version="0.2.0"; sha256="097cyk0lf3h4v3ff0icqj7a80yvs06damw1sc4hdqf2f21d6qihh"; depends=[clue gtools igraph lda MASS Matrix poisbinom Rcpp RcppArmadillo]; }; + NetMix = derive2 { name="NetMix"; version="0.2.0.1"; sha256="0363z06y7ildk7bifhj2lmva0hf591nyp10x9ccd6csj387n968p"; depends=[clue gtools igraph lda MASS Matrix poisbinom Rcpp RcppArmadillo]; }; NetOrigin = derive2 { name="NetOrigin"; version="1.1-4"; sha256="061hfllic8z3ps4znk3c7qjhzqdifk99ikvczxacih5hw86a9j4m"; depends=[colorspace corpcor Hmisc igraph mvtnorm plyr]; }; NetPreProc = derive2 { name="NetPreProc"; version="1.2"; sha256="07drrgvgl3msbcxi113hinqss30lkzrv9hqkzwa41bpssfq8x68c"; depends=[graph]; }; NetRep = derive2 { name="NetRep"; version="1.2.4"; sha256="1swlb2k9bc7whvslxbklz864j9ynvna73hvq5rhv61cv5vy05ksd"; depends=[abind BH foreach RColorBrewer Rcpp RcppArmadillo RhpcBLASctl statmod]; }; @@ -3183,7 +3197,7 @@ in with self; { NetworkChange = derive2 { name="NetworkChange"; version="0.8"; sha256="03rzyfiwbqpr4jj3wdg3s1gnfizz39j07yk0q2fkq3a8pfx4w306"; depends=[abind GGally ggplot2 ggrepel ggvis gridExtra igraph MASS MCMCpack mvtnorm network qgraph RColorBrewer reshape rlang Rmpfr tidyr]; }; NetworkComparisonTest = derive2 { name="NetworkComparisonTest"; version="2.2.1"; sha256="0a4v69p1xykzb4s9sqj2bqm333a6sx2j8f8jdnp3l7dlkwg9clqp"; depends=[IsingFit IsingSampler Matrix qgraph reshape2]; }; NetworkDistance = derive2 { name="NetworkDistance"; version="0.3.4"; sha256="0z3q15aq5jqwbyxr4464nq74ib7644f185h8wfzvfi491xkrl4cr"; depends=[doParallel foreach graphon igraph Matrix network pracma Rcpp RcppArmadillo Rdpack RSpectra]; }; - NetworkExtinction = derive2 { name="NetworkExtinction"; version="1.0.0"; sha256="0mnvidqbmd11aq6kh7m4y36lxaz0ks5h69ilskl49562ggxm741q"; depends=[broom doParallel dplyr foreach ggplot2 igraph magrittr MASS network purrr scales sna tidyr]; }; + NetworkExtinction = derive2 { name="NetworkExtinction"; version="1.0.2"; sha256="19rgz2v4p0q6j7q3gs695j2jpxzlwvx06bhcji68hkrn78745ag0"; depends=[broom doParallel dplyr foreach ggplot2 igraph magrittr MASS network purrr scales sna tidyr]; }; NetworkInference = derive2 { name="NetworkInference"; version="1.2.4"; sha256="1x63szbns8wf3k89ibk2p66prngw4fr2ckfn1568mnxdwnzvhrb4"; depends=[assertthat checkmate ggplot2 ggrepel Rcpp RcppProgress]; }; NetworkRiskMeasures = derive2 { name="NetworkRiskMeasures"; version="0.1.4"; sha256="1121ma43jxc4p9rw0sc8w32shf9xrmn5qd1xsqgzr8diymc49zhg"; depends=[dplyr expm ggplot2 Matrix]; }; NetworkToolbox = derive2 { name="NetworkToolbox"; version="1.4.2"; sha256="026gizms1xsmlpzgssgqi2y5lfhvvbqkwy5q3a0d4xvzbmyan3y7"; depends=[corrplot doParallel fdrtool foreach igraph IsingFit MASS pbapply ppcor psych pwr qgraph R_matlab]; }; @@ -3204,14 +3218,14 @@ in with self; { NobBS = derive2 { name="NobBS"; version="0.1.0"; sha256="0i0jyny1c29knpcl4szqwyxvdc3dqjfk5lf2xvwjdx3qas92w03l"; depends=[coda dplyr magrittr rjags]; }; NonCompart = derive2 { name="NonCompart"; version="0.6.0"; sha256="0cda8rd45irx8q33zs9hcfhsanq09hnx3fpkpa9173pn0j6iw0zv"; depends=[]; }; NonNorMvtDist = derive2 { name="NonNorMvtDist"; version="1.0.2"; sha256="11xqdrx03q3anavyxpzb0hz6mcbdy252rzzjlpa2byfdlrfvn178"; depends=[cubature]; }; - NonParRolCor = derive2 { name="NonParRolCor"; version="0.6.0"; sha256="0z4c5f2x995k2lgfwnylag69sgrzq1n3qg9c8fn1mhzkdw4y4108"; depends=[colorspace doParallel foreach gtools pracma scales]; }; + NonParRolCor = derive2 { name="NonParRolCor"; version="0.8.0"; sha256="1rh345vydbg31pbkagyb2xmsy8riam9zj7sc86m6dqvl19lglvg5"; depends=[colorspace doParallel foreach gtools pracma scales]; }; NonProbEst = derive2 { name="NonProbEst"; version="0.2.4"; sha256="1w2ihnwwdnxlnphyd26261lsxaknpi51c15rmn9m183djz9gsvdv"; depends=[caret e1071 glmnet Matrix sampling]; }; NonlinearTSA = derive2 { name="NonlinearTSA"; version="0.5.0"; sha256="1z3fqw19kksadc31f1idrj37gzajrx91pprd07xdar7j6hddf4sn"; depends=[car minpack_lm tsDyn]; }; Nonpareil = derive2 { name="Nonpareil"; version="3.4.0"; sha256="130aags0pgry0d34mj1n4lavc8q43hls7c3jhmkr8k6vyg3ij372"; depends=[]; }; NormExpression = derive2 { name="NormExpression"; version="0.1.0"; sha256="1j4q8mb70ig40acfd9kfy12vxdvq3qpf53rxh47kkw8mywnd0449"; depends=[]; }; NormPsy = derive2 { name="NormPsy"; version="1.0.8"; sha256="13w4xjdjjg9mzmfaflc0gp306kazyvxshpj4vnl6gym3vpi9qax8"; depends=[lcmm]; }; NormalLaplace = derive2 { name="NormalLaplace"; version="0.3-0"; sha256="0njgjdx2yvvy5jb5zn6zr7jdz5hck5bbkicv15z4ai4ibmckqjmh"; depends=[DistributionUtils GeneralizedHyperbolic]; }; - NormalityAssessment = derive2 { name="NormalityAssessment"; version="0.0.2"; sha256="0i02mqxgyzm6y02rbk6skqp58hf35cg4wpfa9abx8rsmbg09jpxj"; depends=[dplyr DT ggplot2 rio shiny shinyalert shinyBS stringi stringr]; }; + NormalityAssessment = derive2 { name="NormalityAssessment"; version="0.1.0"; sha256="0r9a51z614si3b45g01lfgapmgc4smjf2hylgy5kvq8w0yh0w5y6"; depends=[dplyr DT ggplot2 rio rmatio shiny shinyalert shinyBS stringi stringr]; }; NostalgiR = derive2 { name="NostalgiR"; version="1.0.2"; sha256="0rpvwi815sdhaxqpji1y6g0vy8mkn5k6wci0a4jf54pkywwkwrwp"; depends=[txtplot]; }; NovelDistns = derive2 { name="NovelDistns"; version="0.1.0"; sha256="073969vk2vg58fx5h0v92m3zb1rdzlvv809vyahy3gxrj9n13lmh"; depends=[AdequacyModel gsl rootSolve]; }; Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1.1"; sha256="0fanf7cl8dlb8iqw8ww03dd5s6mrpr97m2c511clqkaavbd0yzkp"; depends=[]; }; @@ -3220,7 +3234,7 @@ in with self; { OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-3"; sha256="00j5f6kw67qr83cmds9y5rzwiv2sb2b2bfbr5cclpr3wcsw278fs"; depends=[curl xml2]; }; OBASpatial = derive2 { name="OBASpatial"; version="1.9"; sha256="13jx5f5piii9cys7xyhfwilyg87zsi632fscy8902mlhbgg7abkp"; depends=[cubature HDInterval invgamma LaplacesDemon modeest mvtnorm truncdist]; }; OBIC = derive2 { name="OBIC"; version="2.0.1"; sha256="0yrgnrhxn5nv0gbhzj2psskr12yaygv7bns64al1cgk18dlrsgb0"; depends=[checkmate data_table]; }; - OBL = derive2 { name="OBL"; version="0.2.0"; sha256="03a8xk7gakziw9bd25izpsby0r7b28wyhd785p22m4dfl46663pg"; depends=[dplyr forcats foreach forecast ggplot2 tibble]; }; + OBL = derive2 { name="OBL"; version="0.2.1"; sha256="06icw1dnmavgaf51fs2nfi6582cpjrnlii1j9s62nwnwfnqw00v3"; depends=[dplyr forcats foreach forecast ggplot2 tibble]; }; OBMbpkg = derive2 { name="OBMbpkg"; version="1.0.0"; sha256="01wch8wwij3fd0jambk0hpkhlnp4ryrq8qnnr2w1iad9zssjyii5"; depends=[]; }; OBsMD = derive2 { name="OBsMD"; version="6.1"; sha256="0jvvcx2lc39rdnlbhykam6cf94lbci9zc1vshwfhvygblnmjgrzr"; depends=[]; }; OCNet = derive2 { name="OCNet"; version="0.5.0"; sha256="111sk662a3qrkknlvw1x605gg5rskyayd1scafbswp6zjgrczgh4"; depends=[fields igraph rgdal rgl sp spam SSN]; }; @@ -3271,10 +3285,10 @@ in with self; { Observation = derive2 { name="Observation"; version="0.3.0"; sha256="1z9ldp050f7jy76s8yk509nwjx1ymvk5k9d19i67brd7xcawxnr3"; depends=[svDialogs]; }; OceanView = derive2 { name="OceanView"; version="1.0.6"; sha256="1ww6xhpvs3y0zx7pgj8083a8v4l4cm0b0b497b4gsjbcbnbnal9c"; depends=[plot3D plot3Drgl rgl shape]; }; OddsPlotty = derive2 { name="OddsPlotty"; version="1.0.2"; sha256="0adgbrni7yrarybh0djmq68hifwqzn2rn9mfqgwqma1d7mg3ai93"; depends=[caret e1071 ggplot2 ggthemes magrittr mlbench rmarkdown tibble tidymodels]; }; - OenoKPM = derive2 { name="OenoKPM"; version="0.1.2"; sha256="1rw740zw38k3q9kl89rvn740d5v4k1hhmlz4bp9ynhnq34g9p9rq"; depends=[extrafont ggplot2 ggtext minpack_lm openxlsx]; }; + OenoKPM = derive2 { name="OenoKPM"; version="2.1.3"; sha256="14hl749zbvw45gnd8iqg630iwfd694rjgjasc91vcrfylaqqhyhj"; depends=[ggplot2 minpack_lm openxlsx]; }; Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; }; OkNNE = derive2 { name="OkNNE"; version="1.0.0"; sha256="0ggx508cqkqc51qw10cajm8r3k5h474n7y8dgck2fr4db047zmcm"; depends=[FNN]; }; - OlinkAnalyze = derive2 { name="OlinkAnalyze"; version="3.1.0"; sha256="0cmd6clj18ix64iax6j93ydgbr8gad4pn8cwh401sbbilsc9yi31"; depends=[broom car dplyr emmeans forcats generics ggplot2 ggpubr ggrepel lme4 lmerTest magrittr readxl rlang rstatix stringr tibble tidyr tidyselect zip]; }; + OlinkAnalyze = derive2 { name="OlinkAnalyze"; version="3.2.2"; sha256="1fbq3pw8x9bfnr42is0l4vfzdzp52lf9p9j6x0qgndhqiw9rzg90"; depends=[broom car dplyr emmeans forcats generics ggplot2 ggpubr ggrepel lme4 lmerTest magrittr readxl rlang rstatix stringr tibble tidyr tidyselect zip]; }; OmegaG = derive2 { name="OmegaG"; version="1.0.1"; sha256="1aihcrgml67rvnx9vpnq2nnbc79kicw4ks1fradsa36ykkdz6b1g"; depends=[]; }; OmicKriging = derive2 { name="OmicKriging"; version="1.4.0"; sha256="08frr38yf5d0l3zwkbq9465xrbyzsn8sx9icqc3yvfnxrkhrpzig"; depends=[doParallel foreach irlba ROCR]; }; OmicNavigator = derive2 { name="OmicNavigator"; version="1.11.5"; sha256="0c34gcwwqsl1sxsq54i4lx6ih19jqcfxqbq948rknxz3l5f00jm6"; depends=[data_table jsonlite]; }; @@ -3285,7 +3299,7 @@ in with self; { OnboardClient = derive2 { name="OnboardClient"; version="1.0.0"; sha256="15ymf163a80s4yvi5z884irvkb1ivnxpr505z96s23hs8ibhk2bh"; depends=[data_table dplyr httr jsonlite lubridate plyr rrapply rstudioapi stringr tibble tidyr tidyselect]; }; OncoBayes2 = derive2 { name="OncoBayes2"; version="0.8-7"; sha256="0psw7hily07xz61x25mg7iirr8aic32ny0770ks8ldy5rq2qjg86"; depends=[abind assertthat bayesplot BH checkmate dplyr Formula ggplot2 matrixStats posterior Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tibble tidyr tidyselect]; }; Oncotree = derive2 { name="Oncotree"; version="0.3.4"; sha256="11pn50zshv1rl2mvars5iwzqfzlm9i8rd1rlz3pn1nn94051d8ab"; depends=[boot]; }; - OneArm2stage = derive2 { name="OneArm2stage"; version="1.1.4"; sha256="0c014kr46rzgcpjq3n2lr2i66gvkqd60m2l5hfc7i5956ia7fvxq"; depends=[flexsurv IPDfromKM survival]; }; + OneArm2stage = derive2 { name="OneArm2stage"; version="1.1.5"; sha256="14vrf3x625c0xad18pajbgb4d4l57f1gqhy4y2l3wg1m1i2kiyns"; depends=[flexsurv IPDfromKM survival]; }; OneArmTTE = derive2 { name="OneArmTTE"; version="1.0"; sha256="186386pjjvlfq38950n1sdx0wq31q8ggjlqlrn07v68bcqjl70y6"; depends=[dplyr survival tibble tidyr]; }; OneR = derive2 { name="OneR"; version="2.2"; sha256="1k7rzhcwq5b2yi4zfsc1r0yb6w65gxj9835d2a1dclallja3zav2"; depends=[]; }; OneSampleMR = derive2 { name="OneSampleMR"; version="0.1.2"; sha256="1g2ia06450xy6mbkn13r9wzap1jxz1iw36jiy3699zm9azndd002"; depends=[Formula gmm ivreg lmtest msm]; }; @@ -3337,10 +3351,9 @@ in with self; { PAFit = derive2 { name="PAFit"; version="1.2.5"; sha256="07n27g2yy2lskna7qa4j6am3prdcwfnx98ppvcarsxgzvywz0scv"; depends=[ggplot2 igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; PALMO = derive2 { name="PALMO"; version="0.1.2"; sha256="0vh0i5qb26267w5dzply091dh4mcxyza7yyhh7sy2wmwb04834ak"; depends=[circlize ComplexHeatmap cowplot dplyr factoextra ggforce ggplot2 ggrepel knitr lme4 MAST pbapply pheatmap reshape2 Rtsne Seurat tidyverse]; }; - PAMA = derive2 { name="PAMA"; version="1.2.0"; sha256="12fvkcdkn66gzr193fq9byf64qlq2x9dkjv9hpfw770l4yw496jn"; depends=[ExtMallows mc2d PerMallows rankdist Rcpp]; }; PAMhm = derive2 { name="PAMhm"; version="0.1.2"; sha256="0k0n3ni0ypcizri39v76x1vv7hlxlmbpfi7w81yxy9inz7zz4zfw"; depends=[cluster heatmapFlex plyr R_utils RColorBrewer readmoRe readxl robustHD]; }; PAMmisc = derive2 { name="PAMmisc"; version="1.9.5"; sha256="1jlfp0b2ipvkzk3715igfqhiha294bn99zi1dc5shr9c47rs44v3"; depends=[dplyr geosphere ggplot2 hoardr httr lubridate magrittr ncdf4 PamBinaries purrr RcppRoll rerddap RSQLite seewave stringr tuneR viridisLite xml2]; }; - PAMpal = derive2 { name="PAMpal"; version="0.16.0"; sha256="0chpsqwrimn6v5i24r77dr4ib9kgi71ppmjzjyhck1ygv702g260"; depends=[data_table dplyr gam ggplot2 knitr lubridate manipulate PamBinaries PAMmisc purrr reticulate rlang RSQLite rstudioapi seewave signal stringr tidyr tuneR xml2]; }; + PAMpal = derive2 { name="PAMpal"; version="0.17.0"; sha256="09rd9h67y27xwgwfxp6k8nvhi0ccsw6h2kx1m1dd90iicbb03yk2"; depends=[data_table dplyr gam ggplot2 knitr lubridate manipulate PamBinaries PAMmisc purrr reticulate rlang RSQLite seewave signal stringr tidyr tuneR xml2]; }; PAS = derive2 { name="PAS"; version="1.2.5"; sha256="175p3bnpnhknfsc29hri0l2ipz1x6qcxs2bq7awns8lccam466r2"; depends=[glmnet]; }; PASSED = derive2 { name="PASSED"; version="1.2-1"; sha256="1qzxc2xwqw1vc4ld8iask1aijmsl0jhw17rgph08hwl8cqmnm4nd"; depends=[betareg rootSolve]; }; PASWR = derive2 { name="PASWR"; version="1.3"; sha256="1p4896r4k6c0aaag4mwds2azp41amf726c4v62zca92cpsay4nml"; depends=[e1071 lattice MASS]; }; @@ -3356,12 +3369,12 @@ in with self; { PBNPA = derive2 { name="PBNPA"; version="0.0.3"; sha256="1wmgcmspilfv6pjy7696j2xmq8m41p27plnr1qr0fnzyz66pf37m"; depends=[metaRNASeq]; }; PBRF = derive2 { name="PBRF"; version="1.0.0"; sha256="1ibwywgbxnxcb3z2kl2bgh7fz512nhgy2zcdym67asp76c6rkqg6"; depends=[]; }; PBSadmb = derive2 { name="PBSadmb"; version="1.1.4"; sha256="11dxy6rdhwairymigwqxd51hxz82011sx0gzzphcs6i4gr0c54c3"; depends=[PBSmodelling]; }; - PBSddesolve = derive2 { name="PBSddesolve"; version="1.12.6"; sha256="0570q1h91695qw9gnkv3d2bip40pzaapy66042qac4yjsg7wca2z"; depends=[]; }; + PBSddesolve = derive2 { name="PBSddesolve"; version="1.13.1"; sha256="062biynya1nr75awri60ak60hs07h7cdnaibjn9943s7gzxgsgi4"; depends=[]; }; PBSmapping = derive2 { name="PBSmapping"; version="2.73.2"; sha256="0glkqcgykhcnh0si0j3f12kapb2w1fglgfll0jrnjikajwvj3fpm"; depends=[]; }; PBSmodelling = derive2 { name="PBSmodelling"; version="2.68.8"; sha256="07qaqb6sd1idmryxlz0gxb4d3apzql9vp4b16nazba08ksx0y7wf"; depends=[XML]; }; PCA4TS = derive2 { name="PCA4TS"; version="0.1"; sha256="1qi9nlaf5181afrdvddh10a9vxyhry102n3dhai86im8yz4if9y6"; depends=[tseries]; }; PCADSC = derive2 { name="PCADSC"; version="0.8.0"; sha256="0pwkmmnsw3c6ch2k5wdc8ig71994pdp79v3a5aa9n9aq55a8c2ir"; depends=[ggplot2 Matrix pander reshape2]; }; - PCAmatchR = derive2 { name="PCAmatchR"; version="0.3.2"; sha256="1dpilm3f6jylm2zggdpdz1gx0z6i56p8rxj744d9lqs1lp6nf37y"; depends=[]; }; + PCAmatchR = derive2 { name="PCAmatchR"; version="0.3.3"; sha256="0ycplivjiz2w3wiqnqga0ywwdbd9mxqzm92k3bjva8009jxxijax"; depends=[]; }; PCAmixdata = derive2 { name="PCAmixdata"; version="3.1"; sha256="0flrsnbchwk06dmkg3vqykp9n4pqs265szn1r10navp8ki3rrmvh"; depends=[]; }; PCDimension = derive2 { name="PCDimension"; version="1.1.13"; sha256="0mpf7m4daqaip18yfsyanrmbjq4ib9fw1b65ajdazicm400bw6gb"; depends=[changepoint ClassDiscovery cpm kernlab oompaBase]; }; PCFAM = derive2 { name="PCFAM"; version="1.0"; sha256="196jzv0f6j60zkyagm9n98339ipn8mrhmhl3q4g053z8f6mm9zmv"; depends=[]; }; @@ -3369,7 +3382,7 @@ in with self; { PCICt = derive2 { name="PCICt"; version="0.5-4.3"; sha256="1xihjyhp1mfbm07sy250ijrk4ljz80l5z5w6x2m1j0yss0r6mrqf"; depends=[]; }; PCL = derive2 { name="PCL"; version="1.0"; sha256="0sqlwg0aiw9f1z4x5nixv4x3rq5rnm5i1hijdqygnh9dvckfrgs0"; depends=[]; }; PCLassoReg = derive2 { name="PCLassoReg"; version="1.0.0"; sha256="1m79aiij4dglfz5qhm5h76hxpgszrpzfw37nvx2y6gcq6dya8krl"; depends=[grpreg survival]; }; - PCMBase = derive2 { name="PCMBase"; version="1.2.12"; sha256="0p18g660yax8mmnhq1pd4nax4saf8syqj7c1xpspjbfkr78kh15q"; depends=[ape data_table expm ggplot2 mvtnorm xtable]; }; + PCMBase = derive2 { name="PCMBase"; version="1.2.13"; sha256="152zs0v64rcw2mgqd2pxydxpdx5ygvl3hd3m9xjv70im6zw43myv"; depends=[ape data_table expm ggplot2 mvtnorm xtable]; }; PCMBaseCpp = derive2 { name="PCMBaseCpp"; version="0.1.9"; sha256="0k40mxs8w1vk7qwpkv8gnq6cq3kpj7wvf0i6f1qn1wmm2vvz1kfy"; depends=[abind data_table PCMBase Rcpp RcppArmadillo]; }; PCMRS = derive2 { name="PCMRS"; version="0.1-4"; sha256="0bf85zv3nl13gsdi96cd2qg7mfppsccs0ci7l204hws8nmbvri83"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; PCPS = derive2 { name="PCPS"; version="1.0.7"; sha256="0gxymz0yws1q1bxkpxi0lmbv57xx62h3dl7z3i2cnbagswkax3zh"; depends=[ape nlme phylobase picante RcppArmadillo SYNCSA vegan]; }; @@ -3377,7 +3390,7 @@ in with self; { PCS = derive2 { name="PCS"; version="1.3"; sha256="0v9vczc9hml6mzxglh106a9f5gy3x5m471lkzaw3ps8z76sgrpyr"; depends=[multtest statmod]; }; PCSinR = derive2 { name="PCSinR"; version="0.1.0"; sha256="1z8yjryw3c43vc6fxcwiindmyq6r63pc1zr3aybwmys6mv697bb4"; depends=[]; }; PCovR = derive2 { name="PCovR"; version="2.7.1"; sha256="1lvj3kf4pnvbr7lk3kzvh72akga49zx25b3w7nq24925s129sqx1"; depends=[GPArotation MASS Matrix ThreeWay]; }; - PDE = derive2 { name="PDE"; version="1.4.0"; sha256="0qizclfaig2a6ybpa1qid2lhzasfb6i30vy6n4mv2765db7h5dkf"; depends=[tcltk2]; }; + PDE = derive2 { name="PDE"; version="1.4.2"; sha256="032r72dmxv8far305y9738grylp0g96p7jkmk0dg5cwm02570zy5"; depends=[tcltk2]; }; PDFEstimator = derive2 { name="PDFEstimator"; version="4.3"; sha256="1pnkds7m7g58ci4n35szdrpq3fpxkblvbyvyf9qwrm8casijfsqs"; depends=[MultiRNG plot3D]; }; PDM = derive2 { name="PDM"; version="0.1"; sha256="1pbdy13ji9c6krgh2r1qgrzmf4hdmrdzylsr71n3hh5jq4n9xg8x"; depends=[jpeg]; }; PDMIF = derive2 { name="PDMIF"; version="0.1.0"; sha256="0mlc31f4z0k5xk1fil0hx5dcbm7afia74kxb7xmnx4jcblidxnd2"; depends=[diagonals ncvreg quantreg]; }; @@ -3385,9 +3398,10 @@ in with self; { PDQutils = derive2 { name="PDQutils"; version="0.1.6"; sha256="0mmfi0ifwbkjm0274sddpwkj27cvdkwngnka8vdmfm4b2nn7vgsp"; depends=[moments orthopolynom]; }; PDSCE = derive2 { name="PDSCE"; version="1.2.1"; sha256="1amy4rnvlcfvpma8pqd6wli1j0pjjk49i1qywa43lzgdwgd5dl9v"; depends=[]; }; PDShiny = derive2 { name="PDShiny"; version="0.1.0"; sha256="0s09sywvy83dj06rkxzyi06wfymwnfpgf3lpgjbb8ps8q3byd4vs"; depends=[shiny]; }; - PDtoolkit = derive2 { name="PDtoolkit"; version="0.4.0"; sha256="02gw4l4wqz6hccb35ip4ynjqs6dhllkpvglmlzav9djvv3yj83fg"; depends=[dplyr monobin rpart]; }; + PDtoolkit = derive2 { name="PDtoolkit"; version="1.0.0"; sha256="170f5cwq3v8qhj39jms291khz72x9ajswx2sx9m6d2gpf89nwwh5"; depends=[dplyr monobin rpart]; }; PEACH = derive2 { name="PEACH"; version="0.1.1"; sha256="0ciq2cci35rv39pgpp7i30jxlmr85726kh07ww22ryq3bm04ylg8"; depends=[MASS metap mnormt]; }; PEGroupTesting = derive2 { name="PEGroupTesting"; version="1.0"; sha256="1z863ard0cc2g8ibxnmxhiqhvs53r6b8gpnavnfchm9432ifcbwi"; depends=[]; }; + PEIMAN2 = derive2 { name="PEIMAN2"; version="0.1.0"; sha256="01jsyp9yk576v3bc0a33y0f8w9v4b47g5hc0zahf3zl4bkp8i4wv"; depends=[dplyr forcats ggplot2 glue lifecycle magrittr purrr rlang stringr tidyverse]; }; PEIP = derive2 { name="PEIP"; version="2.2-3"; sha256="1ljalgffgrn9l3q914jjxrn1j740jqk4j8q1vzn3si4np9mz92vp"; depends=[bvls fields geigen Matrix pracma RSEIS]; }; PELVIS = derive2 { name="PELVIS"; version="2.0.3"; sha256="1sym6lbspzqcmg0k0r07kv65pswq39fxx5xdyiv6pm2r3v49p8jq"; depends=[DT htmlwidgets MASS shiny]; }; PERMANOVA = derive2 { name="PERMANOVA"; version="0.2.0"; sha256="1lmnp1g1i1kqa30cvakkl8g2m2h5jl73qx8dy37kv62mv0knlg5m"; depends=[deldir MASS Matrix scales xtable]; }; @@ -3398,7 +3412,7 @@ in with self; { PGRdup = derive2 { name="PGRdup"; version="0.2.3.7"; sha256="0zm0cm98nps2bfr66mb4j7a0v3s407zqrl2l2nvzg9yyqlaznzc3"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; PH1XBAR = derive2 { name="PH1XBAR"; version="0.10.1"; sha256="0b9g2mz0vcaqmbpm0cisr6c9l2bk5y3bn0s9096dl5fq9hyma7na"; depends=[forecast mvtnorm pracma]; }; PHENIX = derive2 { name="PHENIX"; version="1.3.1"; sha256="1gd9ycrwawi81al4f5v559km1112giwqnwvvk8ynj4kdb5bqpyq4"; depends=[ppcor SuppDists]; }; - PHEindicatormethods = derive2 { name="PHEindicatormethods"; version="1.4.1"; sha256="0w3qnlvh7mpzninmhfcifygh2mlwmr5hzfkfnigvsxr8jfnn2s25"; depends=[broom dplyr lifecycle purrr rlang tibble tidyr]; }; + PHEindicatormethods = derive2 { name="PHEindicatormethods"; version="1.4.2"; sha256="1qlb0qd4iljgjkpj0yj63p588k4qw8af8civ3hvf32iq8pmnfrkr"; depends=[broom dplyr lifecycle purrr rlang tibble tidyr tidyselect]; }; PHInfiniteEstimates = derive2 { name="PHInfiniteEstimates"; version="2.5"; sha256="0q7gxpfyigvzk7xdpy0bdvvmac7ww1m20il5qgb0bv91rninmr91"; depends=[coxphf lpSolve Rdpack survival]; }; PHSMM = derive2 { name="PHSMM"; version="1.0"; sha256="1phfdzhfdhyry11plfd8a2lcn3rg02m84brw7fp2lg3hsxjg5ch7"; depends=[Rcpp RcppArmadillo]; }; PHYLOGR = derive2 { name="PHYLOGR"; version="1.0.11"; sha256="1fq2ny093b4881nwgj6wr8qd5g4dcxb51sdx40ndyxxpq6jj16n9"; depends=[]; }; @@ -3409,7 +3423,7 @@ in with self; { PINSPlus = derive2 { name="PINSPlus"; version="2.0.6"; sha256="0mws1064kwfm3csdzpfn4g2pwjasdmx9nz5x28znxv8hwrlgm2zw"; depends=[cluster doParallel entropy FNN foreach impute irlba matrixStats mclust Rcpp RcppArmadillo RcppParallel]; }; PINstimation = derive2 { name="PINstimation"; version="0.1.1"; sha256="0n1jn33ckd00j6k4ij941gg8b7qq4vr7sk0zls0irxz6gbasz1zn"; depends=[coda dplyr furrr future knitr nloptr Rdpack rmarkdown skellam]; }; PK = derive2 { name="PK"; version="1.3-5"; sha256="1wzz2qv6h6nc2hcsg4098951i608xbbhc9f9ngamfigh5sbmzbh6"; depends=[]; }; - PKI = derive2 { name="PKI"; version="0.1-11"; sha256="17czxqilgbh2v1kgjvqcz8m1cbjv4iygi5vn27wh1pyaga6sv8z9"; depends=[base64enc]; }; + PKI = derive2 { name="PKI"; version="0.1-12"; sha256="0nidg6l9nrmpyimi502fydy22r247w9i4ngb2xdbxjvfhr17m0xd"; depends=[base64enc]; }; PKLMtest = derive2 { name="PKLMtest"; version="1.0.1"; sha256="0i1kxczlhn95jw1w7vw87svqhpq9j6xi4fhy974yjx9xhax171hq"; depends=[ranger]; }; PKNCA = derive2 { name="PKNCA"; version="0.10.0"; sha256="1vivg8mh5aizqnw6a47k9i0sv8s7sidfaap4n5nv078vncmh9l96"; depends=[checkmate digest dplyr nlme purrr rlang tibble tidyr]; }; PKPDsim = derive2 { name="PKPDsim"; version="1.1.1"; sha256="0h9rxwjh2cxn3mlpgwy86lrq6y820rhxjyxhjyi4l0k7j6cshlbd"; depends=[BH data_table jsonlite magrittr MASS randtoolbox Rcpp stringr]; }; @@ -3431,14 +3445,15 @@ in with self; { PMCMR = derive2 { name="PMCMR"; version="4.4"; sha256="05n13pp5yff6pzk4ry07crddfaj3jlglrd1vkcnacyd8jpaxkd77"; depends=[]; }; PMCMRplus = derive2 { name="PMCMRplus"; version="1.9.6"; sha256="1mvj3cwrdkl3frk7fvh6l7v7yya5p3xm4z0qhc4fvykxdmb92ivz"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; PMwR = derive2 { name="PMwR"; version="0.18-0"; sha256="1d3bd1k5jqfx0nfac97ghlch5br6d8xh31was4m6skvs1ikqq53h"; depends=[datetimeutils fastmatch NMOF orgutils textutils zoo]; }; - PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.7.0"; sha256="0bjqahrnsgc5i506jcjcin62lgn9zx2hrpflpnqzhshkhinnxnbz"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; - PNAR = derive2 { name="PNAR"; version="1.2"; sha256="0m11c07c34cfmjdrb21xb5blbgrkyjgvnighh20jf1skxbl6i1wl"; depends=[doParallel foreach igraph nloptr Rfast Rfast2]; }; + PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.7.1"; sha256="0dxbx8585irfaaf1yll8jmfa719s07b6aflj8g39zw79lry5fl9d"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; + PNAR = derive2 { name="PNAR"; version="1.3"; sha256="0flc02rmyw8q410xcyg2ad00ck7b8jyjqw7xym3yaxg6nfbq8w77"; depends=[doParallel foreach igraph nloptr Rfast Rfast2]; }; PNSIBGE = derive2 { name="PNSIBGE"; version="0.1.7"; sha256="0cs0bpb4fdkgznds579q7fblj0jay6wjyfhwpwc4y6z8ai1rhgja"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; PNWColors = derive2 { name="PNWColors"; version="0.1.0"; sha256="1phplnclkficfv8s6wsyrckk4ixzbayiy5iix6dddg40485l9nyj"; depends=[]; }; POCRE = derive2 { name="POCRE"; version="0.6.0"; sha256="0kni15dr7qhldn68w51mzg6pyk95dx717qy0f9230hpbg97791hz"; depends=[EbayesThresh ggplot2 pracma]; }; POD = derive2 { name="POD"; version="1.2.0"; sha256="1xg2xzfmzg2qrwd02xy4fwsfmccigw6lm5266z6w1kxzb7p7bbw0"; depends=[]; }; POET = derive2 { name="POET"; version="2.0"; sha256="0w3jhj45sxisyrpcsazbrbcsz7rmraw71jjm0zixbcgc4klb98ar"; depends=[]; }; POINT = derive2 { name="POINT"; version="1.2"; sha256="0b97ish2xxvp7xy0qqbg68hy0nvdvhi8zpgd4wvczn5r8586qk6g"; depends=[CompQuadForm Matrix rARPACK]; }; + POMADE = derive2 { name="POMADE"; version="0.1.0"; sha256="1f9r7bmmc1lblvmb834ss38x2ki4c19mkx9h8i8ygkcdsb931xdv"; depends=[dplyr furrr future ggplot2 magrittr purrr stringr tibble tidyr]; }; POMaSPU = derive2 { name="POMaSPU"; version="1.0.0"; sha256="0jz3jgzdykv0xvfw3ix0hbs32as6dp7p5v8bj5nddknx10d0siya"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; POSSA = derive2 { name="POSSA"; version="0.6.1"; sha256="0w45rhj9qn8fwsy8s1xbpns6vzybcjgmcbwwhqdbyp76w6h3lbk3"; depends=[data_table]; }; POSTm = derive2 { name="POSTm"; version="1.2"; sha256="1fckd5c4hdviwy1b7cmwv8nqkaipfv838yjfsyacj8hxlzdlwlhj"; depends=[ape CompQuadForm]; }; @@ -3451,7 +3466,7 @@ in with self; { PPCI = derive2 { name="PPCI"; version="0.1.5"; sha256="141811iq0g2rq7lxpz9a44kyjfylj85yqgcjq7b23xfg2wbcp8dd"; depends=[rARPACK]; }; PPMR = derive2 { name="PPMR"; version="1.0"; sha256="07fky5xc1dmmn23wwdjm46c86i7q20dv5f2147828v52hhky873g"; depends=[Rcpp RcppArmadillo]; }; PPQplan = derive2 { name="PPQplan"; version="1.1.0"; sha256="072r7myqsnpyla37q6bj9glwvbygb9g8xkl60q055yzxmfh4rsbr"; depends=[ggplot2 plotly]; }; - PPRL = derive2 { name="PPRL"; version="0.3.7"; sha256="0259vg89v3k1h5mf896xf4dihyv1n535ypn1h0syk8sb7f4qr3q9"; depends=[Rcpp settings]; }; + PPRL = derive2 { name="PPRL"; version="0.3.8"; sha256="1m49n7kl9675hrlh6vqq69sp7bdiv4fwlncqpp58kz67jk1ypnf0"; depends=[Rcpp settings]; }; PPSFS = derive2 { name="PPSFS"; version="0.1.0"; sha256="180brwqcs2qjh01a1qwdy2a8g19scn4mxzc3s6pw8gyl2r3fzxi7"; depends=[brglm2 Rcpp RcppArmadillo]; }; PPTcirc = derive2 { name="PPTcirc"; version="0.2.3"; sha256="07py7zdl7nhc1a425mz7cmgl25k0k9fdid754pnkffn5n5xkbca1"; depends=[circular progress]; }; PPforest = derive2 { name="PPforest"; version="0.1.3"; sha256="1byn2l91nws91xgjjal610vv4yns12z861rq3iks4kv4giwgdfq1"; depends=[doParallel dplyr magrittr plyr Rcpp RcppArmadillo tibble tidyr]; }; @@ -3483,7 +3498,7 @@ in with self; { PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1.2"; sha256="1gs2wdi5mcwvn8jqc7ximll05m824jib6hmxm8b850yy2cb3n1l4"; depends=[]; }; PSCBS = derive2 { name="PSCBS"; version="0.66.0"; sha256="14rs2wywipbkia3dbzfhpnkmfgdvm2bf586lggsx63sywlv5d02q"; depends=[aroma_light DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; PSF = derive2 { name="PSF"; version="0.5"; sha256="00zwbw9bn5bs181m831nb08wwrmp2jpmqmriy8j52njq289hnc32"; depends=[cluster data_table]; }; - PSGD = derive2 { name="PSGD"; version="1.0.1"; sha256="0yf1cmanm41i71c3fzkp1mmd2v9sn5yn3hadxrmvmrql1i9j2s4x"; depends=[Rcpp RcppArmadillo]; }; + PSGD = derive2 { name="PSGD"; version="1.0.2"; sha256="1dqm1pv6cqcf69bxywwg0q5n98g95b363gszi2k19bkwvh4a1jq9"; depends=[Rcpp RcppArmadillo]; }; PSLM2015 = derive2 { name="PSLM2015"; version="0.2.0"; sha256="1f8kzlqil2ac8a9fbj9fhdni2narh2yaaz044mlx7gsv2ns3ai19"; depends=[dplyr ggplot2 magrittr]; }; PSPManalysis = derive2 { name="PSPManalysis"; version="0.3.8"; sha256="0vccvhda86430w3gkjhg565i77dci1aa6pizs61w1xjc75rrbnan"; depends=[pkgbuild rstudioapi]; }; PSS_Health = derive2 { name="PSS.Health"; version="0.5.1"; sha256="0rdqkwry6zpf0nm3in8agb3kw1g705i3knydzs8bpsnhna4ap802"; depends=[dplyr DT easypower EnvStats epiR ggplot2 ICC_Sample_Size kappaSize longpower plotly powerMediation powerSurvEpi presize pROC pwr pwr2 shiny shinycssloaders shinyFeedback shinyhelper writexl]; }; @@ -3491,6 +3506,7 @@ in with self; { PSSMCOOL = derive2 { name="PSSMCOOL"; version="0.2.4"; sha256="0iyhs2sas08kjl6hd0y4n4rz4lvvvlrz3w3izl3may6mscykrciy"; depends=[dtt gtools infotheo phonTools]; }; PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; PSW = derive2 { name="PSW"; version="1.1-3"; sha256="0ahm7rp795d7j88n15b3q0gl573p3g0krc7jd1zv87g4bsdc9b5x"; depends=[gtools Hmisc]; }; + PScr = derive2 { name="PScr"; version="1.0"; sha256="0376dddwydgnwdpxdvv9cp8nk2j57dsqmfa94njxw9a19r7g3xw5"; depends=[gtools LambertW mstate nlme pracma survival VGAM]; }; PSweight = derive2 { name="PSweight"; version="1.1.8"; sha256="0vawkkgm72s17cjfww9175dyr100lxdv4gf35p2lz8wcnbsklnv5"; depends=[gbm ggplot2 lme4 MASS nnet numDeriv SuperLearner]; }; PTAk = derive2 { name="PTAk"; version="1.4-0"; sha256="0hm1xij32wgirj7k7qv162zl5r7aj1iyyhpnlbm9wx1mbw72ccbc"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.7"; sha256="1azkrij4kfmvp03lnzm88gwgvz8g54jq94j0qg8ynxvyjzrppc98"; depends=[doParallel foreach survival]; }; @@ -3533,15 +3549,15 @@ in with self; { PantaRhei = derive2 { name="PantaRhei"; version="0.1.2"; sha256="0lv04aa70yd5gr0zfh2gmah4d4h3kw0lym6284akcvll8mhdi8dd"; depends=[]; }; ParBayesianOptimization = derive2 { name="ParBayesianOptimization"; version="1.2.6"; sha256="0g5i4908fl2j1a4jfsg1xs4q92mc29zp8dyf52a370ki2512w6h1"; depends=[crayon data_table dbscan DiceKriging foreach ggplot2 ggpubr lhs]; }; ParDNAcopy = derive2 { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[DNAcopy]; }; - ParallelDSM = derive2 { name="ParallelDSM"; version="0.3.5"; sha256="02sixlx3lmr58hkcxlbmiw27pvz777ngkz3mfz4qaii8yhxsjvy9"; depends=[caret gstat pryr quantregForest randomForest raster rgdal snowfall sp stringr]; }; - ParallelLogger = derive2 { name="ParallelLogger"; version="3.0.1"; sha256="14kqqyfgj5mhm42fqpqw5r409qjnrk38nsls4svm4p7qvyvvhxm2"; depends=[jsonlite snow xml2]; }; + ParallelDSM = derive2 { name="ParallelDSM"; version="0.3.7"; sha256="10yqq7hki08qvymlw6f1w6rrg6381bzhyqa1v2ryxszx3prxxcps"; depends=[caret gstat pryr quantregForest randomForest raster rgdal snowfall sp stringr]; }; + ParallelLogger = derive2 { name="ParallelLogger"; version="3.1.0"; sha256="1cjm498831wzcdfbj6r75agbhw99mccrfvzjcvj7jzz0k82ha4b7"; depends=[jsonlite snow xml2]; }; ParallelPC = derive2 { name="ParallelPC"; version="1.2"; sha256="07y7xb16865khxkvwsk1yglzyy7ja4aj2wpkipaz48i77c3x8bi2"; depends=[]; }; ParamHelpers = derive2 { name="ParamHelpers"; version="1.14.1"; sha256="088sl3az4ysq8cyw82brdn9xm5yy7rqskxih462d1m5hi62gyl04"; depends=[backports BBmisc checkmate fastmatch]; }; Pareto = derive2 { name="Pareto"; version="2.4.2"; sha256="0396jixa4scqcgq8qyhin91mppg4knz2bfik67jh119clwdrd8vj"; depends=[]; }; ParetoPosStable = derive2 { name="ParetoPosStable"; version="1.1"; sha256="1fwji5wrhbxr089dll812csamvb5q2pxn1607rpirarifgfbj28m"; depends=[ADGofTest doParallel foreach lmom]; }; PartCensReg = derive2 { name="PartCensReg"; version="1.39"; sha256="0blzv57cbxqghkz4fc3plvrcw80g0kx17dzmajkfv598m1wm6hc8"; depends=[Matrix optimx ssym]; }; Partiallyoverlapping = derive2 { name="Partiallyoverlapping"; version="2.0"; sha256="0pb0digyigqyzb0zqikgz002kqf1xprcjhxr62a7iqbzy1yycayf"; depends=[]; }; - Patterns = derive2 { name="Patterns"; version="1.3"; sha256="1jmj7jr7q5f6iqrrlv6dz0n2igbppnxfvbdh5nwf5bndyxlldqxn"; depends=[abind gplots igraph jetset KernSmooth lars lattice limma magic Mfuzz movMF msgps nnls plotrix SelectBoost survival tnet VGAM WGCNA]; }; + Patterns = derive2 { name="Patterns"; version="1.4"; sha256="12ci26i0ks23ff11g3pmsns5f3crnrac2hnlqc2pglhrv180m37r"; depends=[abind gplots igraph jetset lars lattice limma Mfuzz movMF nnls plotrix repmis SelectBoost tnet VGAM WGCNA]; }; PdPDB = derive2 { name="PdPDB"; version="2.0.1"; sha256="05aqg0rqrnlmvjxa32ms1vywgwhw5zlfkyf2ij0fn06rp8l2z3lv"; depends=[dendextend plyr tseries]; }; Peacock_test = derive2 { name="Peacock.test"; version="1.0"; sha256="0ypvwywipyh8lm8xkazsfjgjpvvyi2g8kid63qff11372p33m6xs"; depends=[]; }; PeakError = derive2 { name="PeakError"; version="2021.7.1"; sha256="0rsh81p0w11zp8rgxx9cm8537gxhf9hx6xizpbflfx60xhr96is5"; depends=[]; }; @@ -3557,7 +3573,6 @@ in with self; { PepSAVIms = derive2 { name="PepSAVIms"; version="0.9.1"; sha256="0m4jrq6wcjy0k80gvrnm9f7kvi1ifx9182xfq0psyaxpj0ggvzij"; depends=[elasticnet]; }; Peptides = derive2 { name="Peptides"; version="2.4.4"; sha256="1yppbcsa0rb74mmspb6f6c9slcjy5x6c484dk9gy48sg33chp1zw"; depends=[Rcpp]; }; PerFit = derive2 { name="PerFit"; version="1.4.6"; sha256="13917nvxii8pg69h1wcpmlv45sdrdldd3zxdrypr4mn456ff74k4"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; - PerMallows = derive2 { name="PerMallows"; version="1.13"; sha256="0ny2vc8f0npixaw1kp2d93xr4g46nsg8jjwvi6afv9xjvaz0i6wy"; depends=[Rcpp]; }; Perc = derive2 { name="Perc"; version="0.1.6"; sha256="1nwbj56m7pxrg8dyv36501b0lvpq8gbhcr07vs4nps8n3rqwwg81"; depends=[]; }; PerfMeas = derive2 { name="PerfMeas"; version="1.2.5"; sha256="13yjk0kwpbsqwl056hzf0zj2br1mk4faqcn1whdfxmq348c14hjb"; depends=[graph limma RBGL]; }; PerformanceAnalytics = derive2 { name="PerformanceAnalytics"; version="2.0.4"; sha256="0ci26hsj4wnw9g0mh4vrn0cg986cpcpx169rvw6v6rbnjxq718bq"; depends=[quadprog xts zoo]; }; @@ -3573,6 +3588,7 @@ in with self; { PhageCocktail = derive2 { name="PhageCocktail"; version="1.0.3"; sha256="0lr1gnwpaqrf8ny5ssx2cjv8hi6q2ilmr7qif3jl9agh4w0nkp89"; depends=[bipartite factoextra readxl RJSONIO smerc stringr]; }; Phase123 = derive2 { name="Phase123"; version="2.1"; sha256="0bz867wsnrflzlzrql1vgacymx70rb9wik9jw3g34i2vigpl8x8i"; depends=[Rcpp RcppArmadillo survival]; }; Phase12Compare = derive2 { name="Phase12Compare"; version="1.5"; sha256="0n9rjgdllpnj451a8d4p8x3mjf23czcmk7cn1c9v3l7mg4jn18h2"; depends=[mvtnorm Rcpp RcppArmadillo]; }; + PhaseType = derive2 { name="PhaseType"; version="0.2.0"; sha256="0vcmvixb2flrn7qz3568whg5njkxny4hxlmf3ybyi9shfb7jss0a"; depends=[coda ggplot2 reshape]; }; PhaseTypeR = derive2 { name="PhaseTypeR"; version="1.0.4"; sha256="063hl41jnzya189g8pm0kjvh7w4h31hfb4zhvrnh6nk4kr5xa70m"; depends=[expm igraph]; }; PheCAP = derive2 { name="PheCAP"; version="1.2.1"; sha256="00dfy0iby21kqfxz2npz4dn1klxcdlll8xrk2hsmc56fjfidbdhz"; depends=[glmnet RMySQL]; }; PheNorm = derive2 { name="PheNorm"; version="0.1.0"; sha256="10223yfaajzq1ip5qj3kk6iyjzrbb619jkrsxawb0dpkrj56d8v7"; depends=[]; }; @@ -3632,7 +3648,6 @@ in with self; { PooledMeanGroup = derive2 { name="PooledMeanGroup"; version="1.0"; sha256="0i9s7qskjnji3mf6clsi69rnni57v8cysgr9gh3hvxjzlf1sq8y7"; depends=[]; }; PopED = derive2 { name="PopED"; version="0.6.0"; sha256="0s8lr17s6w8isjig4z8jzgpnpsb1kg98d32y7kslbwzl08cbnza0"; depends=[boot codetools dplyr ggplot2 gtools magrittr MASS mvtnorm purrr stringr tibble]; }; PopGenReport = derive2 { name="PopGenReport"; version="3.0.7"; sha256="0drf3yaxrcypl3b6qdl4kkn8zw31hrnkp49lxpisfjsaybj5lk40"; depends=[ade4 adegenet calibrate dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; }; - PopGenome = derive2 { name="PopGenome"; version="2.7.5"; sha256="0xdwgih1n7bkykbzrnp293yzrlj80vr2v6rlsww61nxlhynbh9yn"; depends=[ff]; }; PopVar = derive2 { name="PopVar"; version="1.3.0"; sha256="1yc2qz7g5jv752yrhjq1ymfdjbqwdcp0hv7pm93qsn51k8fc8i9i"; depends=[BGLR qtl rrBLUP]; }; PopulationGrowthR = derive2 { name="PopulationGrowthR"; version="0.1.1"; sha256="0cq7vnmslb4y9d9a4jk7z5xajw4vr2q1qqhkak9m9gidyr4dp5zl"; depends=[dplyr]; }; PortRisk = derive2 { name="PortRisk"; version="1.1.0"; sha256="05yxqcv0cijy3s9zx68f9xy59jv55kmj3v0pz5pgl17j23kb9rlc"; depends=[copula MASS MCMCpack tseries zoo]; }; @@ -3694,7 +3709,7 @@ in with self; { Przewodnik = derive2 { name="Przewodnik"; version="0.16.12"; sha256="1aq80aqflfm1ypqa51h10mc3g0qdr651j6g1b7008k7h0ryq42gv"; depends=[PBImisc PogromcyDanych]; }; Pstat = derive2 { name="Pstat"; version="1.2"; sha256="17bqkaf9590jhiaamaafmvkqmy2aqkcfqhk8m4w35g58j48yk4yx"; depends=[]; }; PsyControl = derive2 { name="PsyControl"; version="1.0.0.0"; sha256="1c5ml6s3c8kzf7p0mig84bmq40b0491ah713bm6jpy2s3nwnmafs"; depends=[irtoys ltm]; }; - PsychWordVec = derive2 { name="PsychWordVec"; version="0.1.0"; sha256="1b8s1w391f81adw4im1w5nw3g495iq9d2fmg4535zmh5kyqpkhpa"; depends=[bruceR data_table dplyr fastTextR ggplot2 ggrepel rgl rsparse Rtsne stringr text2vec vroom word2vec]; }; + PsychWordVec = derive2 { name="PsychWordVec"; version="0.2.0"; sha256="0afl7n8zzkylm51nm5hhjrahk8h96jvxz6hysyc2bmhpkrh9bp94"; depends=[bruceR cli corrplot data_table dplyr fastTextR ggplot2 ggrepel psych purrr reticulate rgl rsparse Rtsne stringr text text2vec vroom word2vec]; }; PtProcess = derive2 { name="PtProcess"; version="3.3-16"; sha256="1d5i847jy9i1llbfsdkqcjmiids3kjxnqscinrwqyv7mwb9ijk2z"; depends=[]; }; PubMedMining = derive2 { name="PubMedMining"; version="1.0.0"; sha256="03lhml5jk69racmhlh6xa8j2rv8xb87vg6hr1caiqpd4kqg16n1q"; depends=[easyPubMed stringr]; }; PubMedWordcloud = derive2 { name="PubMedWordcloud"; version="0.3.6"; sha256="1wfp1fpr4an7psrwidx38brvhvghmvfsgjy4gdx81p1bdsdn2kw2"; depends=[RColorBrewer RCurl stringr tm wordcloud XML]; }; @@ -3728,11 +3743,10 @@ in with self; { QHScrnomo = derive2 { name="QHScrnomo"; version="2.2.0"; sha256="1g7gx1mhvqnldqwi9dx5f7nxqrra9mgfn5rq467f1nhlv6m2kzn6"; depends=[cmprsk Hmisc rms]; }; QI = derive2 { name="QI"; version="0.1.0"; sha256="1r65xq892mga54dfbh5va5zji5d1dx8k0fy611kbdviwqf0dfhx5"; depends=[ggplot2]; }; QLearning = derive2 { name="QLearning"; version="0.1.1"; sha256="1bx77yxsnzh0ny3ghala5fw54lxzrxqk9s32qk3dzvfbyp4paggn"; depends=[]; }; - QPmin = derive2 { name="QPmin"; version="0.5-1"; sha256="1hfvbi2qfynnkg2pmr7qsw75bmijwglnxchbzxcbikm5yw3sd2mz"; depends=[Matrix]; }; QQperm = derive2 { name="QQperm"; version="1.0.1"; sha256="06xhv54zgnx8i22j23a0dqxhh7my416idpkkwq93qd1rdzgamzc8"; depends=[]; }; QR = derive2 { name="QR"; version="0.1.3"; sha256="1xar0mj8s2nb8sks8dzf4wn1axc4rhmhx1qsjn2blsi4i8gfncka"; depends=[tinytest]; }; QRAGadget = derive2 { name="QRAGadget"; version="0.1.0"; sha256="0vmhbpfbbpbcs6s9zjam893yl54spbx4x4698c504g96hcc19kkp"; depends=[htmlwidgets leaflet magrittr miniUI raster scales shiny sp]; }; - QRISK3 = derive2 { name="QRISK3"; version="0.3.0"; sha256="0aqqncmlhb5iks8081y34ydlls3g31j994fqqzsbsc3ckcks87qj"; depends=[]; }; + QRISK3 = derive2 { name="QRISK3"; version="0.4.0"; sha256="1cya1va5msjrlfn49npvfqiyq9sm4kfxsaszxqwkxvxk8aw9ns1i"; depends=[]; }; QRIpkg = derive2 { name="QRIpkg"; version="0.2.2"; sha256="0xqc72p3jm61kifha77c8sfk7b1p7cfdskzkm29w4j06009qd8a8"; depends=[ggplot2 quantreg]; }; QRM = derive2 { name="QRM"; version="0.4-31"; sha256="15dyk3zfy92vj4xny04dh5mqcyb8qh61566m313qs17mxwibvn2a"; depends=[gsl Matrix mgcv mvtnorm numDeriv Rcpp timeDate timeSeries]; }; QRank = derive2 { name="QRank"; version="1.0"; sha256="1f924r5bf5vjfl12hk1n5m3f94g30f6vmvzq2bn8295dflyndck0"; depends=[quantreg]; }; @@ -3741,7 +3755,7 @@ in with self; { QTL_gCIMapping = derive2 { name="QTL.gCIMapping"; version="3.4"; sha256="17f2xmgklbi8kicv7v951zm3bf1q4bdx9lcfbxpac3i7xm985fgr"; depends=[data_table doParallel foreach glmnet lars MASS openxlsx qtl Rcpp readxl stringr]; }; QTL_gCIMapping_GUI = derive2 { name="QTL.gCIMapping.GUI"; version="2.1.1"; sha256="0a155vl869i3li2i67b89p056x50ycqp9yk0ll5g3fp3xcdl80zs"; depends=[data_table doParallel foreach glmnet MASS openxlsx qtl QTL_gCIMapping Rcpp shiny stringr]; }; QTLEMM = derive2 { name="QTLEMM"; version="1.1.3"; sha256="1f0mb2v785qmjk7w6bmc0028q9rfm45i1abmpcbwq4qj1lb4s8zc"; depends=[mvtnorm]; }; - QTLRel = derive2 { name="QTLRel"; version="1.11"; sha256="1ylqzccjrysg7mhyphgzfbbdm7ylpvzjq02lirng1kbm1b8dxiyy"; depends=[gdata lattice]; }; + QTLRel = derive2 { name="QTLRel"; version="1.12"; sha256="1cc89z8yzvxcyx85q0bdn8c4y73db7i81pzqjhw8yssmkhxjwgww"; depends=[gdata lattice]; }; QTOCen = derive2 { name="QTOCen"; version="0.1.1"; sha256="0wlbxk1rd56k02jf3pfzbx6xx5mmf6sb7gvds0067cvb7m42ghcr"; depends=[MatrixModels quantreg Rdpack rgenoud survival]; }; QUALYPSO = derive2 { name="QUALYPSO"; version="2.0"; sha256="1g87763x5dzjlbq15wrpv46pgv5ds8gf9c4pqjj3l43827wzqxpb"; depends=[doParallel expm foreach MASS Rfast]; }; QWDAP = derive2 { name="QWDAP"; version="1.1.17"; sha256="1yq2xm5a1im8g65j89d6xqfbknlrpfh9lpm1ggmn5fw8wq4519ni"; depends=[CORElearn pls Rcpp RcppEigen]; }; @@ -3775,7 +3789,7 @@ in with self; { R_oo = derive2 { name="R.oo"; version="1.25.0"; sha256="1vxy8yw4yblb3vgl64yh0b6zf1d51rnc2c23kmyyw629fxhr1cdq"; depends=[R_methodsS3]; }; R_rsp = derive2 { name="R.rsp"; version="0.45.0"; sha256="192x8cvna1j0sx37xh3ha8bjjyx39pn5wnxzn5gs3z5j93a4d055"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; }; R_temis = derive2 { name="R.temis"; version="0.1.3"; sha256="1qa381fv1hxd1fv9d22772aibiia6m2ycm69znjy3ah2w986hjfh"; depends=[crayon explor FactoMineR igraph NLP slam SnowballC stringi testthat tm tm_plugin_alceste tm_plugin_europresse tm_plugin_factiva tm_plugin_lexisnexis wordcloud]; }; - R_utils = derive2 { name="R.utils"; version="2.12.0"; sha256="00v5hpdid6h1yiwpf631xf1dk1z6dcx7dx83qn56a7pa4194bpkl"; depends=[R_methodsS3 R_oo]; }; + R_utils = derive2 { name="R.utils"; version="2.12.2"; sha256="0dl8rc7s7vg4g2pkmrwwqx7dkm02096jk439x4s0cm21hsmg2g7y"; depends=[R_methodsS3 R_oo]; }; R0 = derive2 { name="R0"; version="1.2-10"; sha256="10ynx3qrw2nr5zd5zws9sbr5qabx6f9i7y7isi915hrqpfddf1pb"; depends=[MASS]; }; R1magic = derive2 { name="R1magic"; version="0.3.3"; sha256="0klfaab1abfq662p5c93h6y222nqphhq6m65hdjms04gl44bk3ww"; depends=[]; }; R2Addhaz = derive2 { name="R2Addhaz"; version="0.1.0"; sha256="1xaqbzq2chsgkg1gc163fq8qcgzq9wwn2bm4mwvc31ay0gg4f3xi"; depends=[ahaz caTools pracma Rdpack survival zoo]; }; @@ -3785,9 +3799,9 @@ in with self; { R2HTML = derive2 { name="R2HTML"; version="2.3.3"; sha256="12qg9rp1j26h2f48dfg5k9jds26ycacv3f3ymk686ks43hd1hzja"; depends=[]; }; R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-7"; sha256="1r12b0gy5747acn0jyf3n2f210a51pgl6vkk1rd4fbbj0dk5bwmf"; depends=[broom coda digest doParallel foreach foreign lattice Matrix memisc R2WinBUGS texreg tibble]; }; R2OpenBUGS = derive2 { name="R2OpenBUGS"; version="3.2-3.2.1"; sha256="0689aqa034xkbyy46m3sjanjkxrii4ma1crm5qw5kaqbx7dg153c"; depends=[boot coda]; }; - R2SWF = derive2 { name="R2SWF"; version="0.9-7"; sha256="1pr3klgb731zwhwkz2c0wj2mvhy5qixzg1x451ik683ycni81qlw"; depends=[sysfonts]; }; + R2SWF = derive2 { name="R2SWF"; version="0.9-8"; sha256="1nlb2fshc5g53yqbq92z899mv9rknwah0p0s2l5r0rzp3v2np5yd"; depends=[sysfonts]; }; R2WinBUGS = derive2 { name="R2WinBUGS"; version="2.1-21"; sha256="0k8k214x712vjj2k1am4zzf6scccs3b98ysiz4lwxpzm818wp1ps"; depends=[boot coda]; }; - R2admb = derive2 { name="R2admb"; version="0.7.16.2"; sha256="1gwp850ff76lqqn6amj75rjqb1szk6x2vlhqgwng4z45i56bmdf7"; depends=[coda lattice]; }; + R2admb = derive2 { name="R2admb"; version="0.7.16.3"; sha256="1sv20hkgz3vvqkwzj7i2xn7sb8skzhdl7jnrk85m6zza65917f32"; depends=[coda lattice]; }; R2jags = derive2 { name="R2jags"; version="0.7-1"; sha256="0si2f0lmnpjcsmy54k51kwj1fkx24dshiidv46h8j2xjq1hp429v"; depends=[abind coda R2WinBUGS rjags]; }; R2sample = derive2 { name="R2sample"; version="1.0.0"; sha256="1gvx4npmqnfpl11wvhslm0icwj0alg9bzwvv00acawcv04jv10yz"; depends=[ggplot2 microbenchmark Rcpp shiny]; }; R2ucare = derive2 { name="R2ucare"; version="1.0.2"; sha256="0940c9zw3fifs7m4hrx9aqv4d56q3263bl12lzk2mx2sfjp9rzlw"; depends=[RMark stringr]; }; @@ -3797,7 +3811,7 @@ in with self; { R62S3 = derive2 { name="R62S3"; version="1.4.1"; sha256="0g01izg77spn79xqwva2gzrvk66i20xlb789wl5rgcz7pz7gpjd2"; depends=[data_table]; }; R6DS = derive2 { name="R6DS"; version="1.2.0"; sha256="0ai1yqfhn634vm88waxdb6j24vwcna29gdqzdrwm0nxwf7l6g0m3"; depends=[R6]; }; R6P = derive2 { name="R6P"; version="0.3.0"; sha256="18qy69zwyzp27fiqlplcjh0034d2pn9dhnfkraarh4jxnbi7masm"; depends=[collections dplyr purrr R6 stringr tibble tidyr]; }; - R6causal = derive2 { name="R6causal"; version="0.6.1"; sha256="0ykwcymqzjcvin6agy5yyzjw484rz4zmhajq0w3dpd8hgy8vyclg"; depends=[causaleffect data_table dosearch igraph R6]; }; + R6causal = derive2 { name="R6causal"; version="0.7.0"; sha256="17dfr8gl83qsarj538zd4010mhp5lzgd9awasq1x4yb4973q3sv1"; depends=[causaleffect data_table dosearch igraph R6]; }; RABR = derive2 { name="RABR"; version="0.1.1"; sha256="1ckh0cw5xaqbzx8f7i6lsbspblfm0mmmadaifmln2rz3vr0hf1f4"; depends=[asd cubature data_table doParallel foreach ggplot2 multcomp multxpert survival]; }; RAC = derive2 { name="RAC"; version="1.5"; sha256="0q0kk9j3blrnhv0rfmryc35lli5j4kds2vmjdpg77znagb45609k"; depends=[maps maptools matrixStats ncdf4 plotrix raster rgdal rgeos rstudioapi sp]; }; RADanalysis = derive2 { name="RADanalysis"; version="0.5.5"; sha256="1py07p24i1pky8wwyy8ajmkg6h2n7nbpxp1w6lrkiyl0p2kgjm20"; depends=[scales sfsmisc]; }; @@ -3815,7 +3829,7 @@ in with self; { RAT = derive2 { name="RAT"; version="0.3.1"; sha256="0234z9a1aqhdfwm6k3g8vw88dwx9n1d1mnnxl1y5qslv429kf23v"; depends=[ggplot2 mapproj stringr]; }; RATest = derive2 { name="RATest"; version="0.1.10"; sha256="019jcwb62w7da2hfys7xhfdxcywj6qn9pd2x6l61704n7bjj0s20"; depends=[ggplot2 gridExtra quantreg]; }; RAdwords = derive2 { name="RAdwords"; version="0.1.18"; sha256="1c3m2j2cf1s51p783rdng5ns913bv7rbjc1vpmrmsxg2kf5f6qyq"; depends=[RCurl rjson]; }; - RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.6"; sha256="15j6vb6rm4ykwjachqyyfvjshiilyjqnpj8x6qc93savk04rf279"; depends=[]; }; + RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.7"; sha256="0a6wnx87cizs3cfx94mczf8cm7hwkn9rfckmk738cajgs4ahnwwr"; depends=[]; }; RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.2"; sha256="02k0l8bi849b2102ysb102xky4p84i9v2r4w6fab7bgf32wvph4w"; depends=[]; }; RAppArmor = derive2 { name="RAppArmor"; version="3.2.3"; sha256="04hxqwi75npayd3ghghswxc51k2xb525drixxk1fvp6hrhdkap5h"; depends=[unix]; }; RAthena = derive2 { name="RAthena"; version="2.6.0"; sha256="1i4jp10qlnpg9acq6jh6ypd8n4kix05czazm7qwdpppvmv1s6vj0"; depends=[data_table DBI reticulate uuid]; }; @@ -3823,7 +3837,7 @@ in with self; { RBMRB = derive2 { name="RBMRB"; version="2.1.7"; sha256="09x7zaigflc0d3pbdrvfv1kdklrlzgd4v2ma3dcr96l36n1iqqns"; depends=[data_table ggplot2 httr plotly rjson]; }; RBNZ = derive2 { name="RBNZ"; version="1.1.0"; sha256="11fdnc2pmw5nq3lswid078l307ln6853a3b9d383msvrkz6yms26"; depends=[httr lubridate readxl rvest xml2]; }; RBPcurve = derive2 { name="RBPcurve"; version="1.2"; sha256="0zkfvnhm780vid4qqdrx9mnc6jxxrmrnq47pqvk35rm3m4l96782"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; - RBaseX = derive2 { name="RBaseX"; version="1.1.1"; sha256="03p0c89pcx3inxa4qlyhvf3hm48rfp5j46b0qkszm96yf3g2b01m"; depends=[data_table dplyr httr magrittr openssl pingr R6 RCurl rex stringr tibble]; }; + RBaseX = derive2 { name="RBaseX"; version="1.1.2"; sha256="1f7lgfsxwqjplv8kk81sw3zmwqi9kxc8g328ylb2c2hiyq4fg49k"; depends=[data_table dplyr httr magrittr openssl pingr R6 RCurl rex stringr tibble]; }; RBesT = derive2 { name="RBesT"; version="1.6-4"; sha256="0i9i1hifr7ljccmr3rd1rxfngimwdr88njr7lqba179g87jg1l42"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 matrixStats mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; RBtest = derive2 { name="RBtest"; version="1.1"; sha256="09da721zfj6cw4i9gifn5f0sv3nj0qfjb96c5w9g9gzx55ihssnk"; depends=[mice nnet psych]; }; RCA = derive2 { name="RCA"; version="2.0"; sha256="0pidb5czrf0dc3ywy6cwm5akgsc62pvf94kfyxibzmd1favykx1h"; depends=[gplots igraph]; }; @@ -3856,7 +3870,7 @@ in with self; { RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; RCurl = derive2 { name="RCurl"; version="1.98-1.9"; sha256="1iff8cbfrz94mp1m82ai448zhipm8xv6zlxmbysd5hsycxqli3gj"; depends=[bitops]; }; RCytoGPS = derive2 { name="RCytoGPS"; version="1.2.1"; sha256="1ppxyrm9h09kk6lnr6yg3n3xl08l9zp4rqliz92k5h42hmgj6f02"; depends=[rjson]; }; - RCzechia = derive2 { name="RCzechia"; version="1.9.4"; sha256="048421nv41zny9mk9l1v59hn3nlci5rcvq3yq2277jj2phsh09kp"; depends=[curl httr jsonlite magrittr sf]; }; + RCzechia = derive2 { name="RCzechia"; version="1.10.0"; sha256="1pda05ykbqa2nskgvlq3mn2m8ag1daq7c002adlrnvs21db7q6rz"; depends=[curl httr jsonlite magrittr sf]; }; RDML = derive2 { name="RDML"; version="1.0"; sha256="13ly1p42njbcygwvkyii8sjqbsywjy5w5g1kd7m8kswi5dsk3qqv"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; RDP = derive2 { name="RDP"; version="0.2.3"; sha256="0fmssv33lxfxk61609dd7865n9w7i6wlap9g5aaa2b0319sbclpd"; depends=[Rcpp]; }; RDS = derive2 { name="RDS"; version="0.9-3"; sha256="0kcq5ym6l80shzxf9zv2rwb84r0q9qr2cwimcg76r97sfx7c2kp2"; depends=[anytime ergm ggplot2 gridExtra Hmisc igraph isotone network reshape2 scales statnet_common]; }; @@ -3872,7 +3886,7 @@ in with self; { RECA = derive2 { name="RECA"; version="1.7"; sha256="1xikj20flqajpkw4wyynmqd1pafbylzwfrmc8bz9pqgggjjhrqql"; depends=[]; }; REDCapExporter = derive2 { name="REDCapExporter"; version="0.2.2"; sha256="0w7c1y58vnkbd11ndkcn5s5c54pmvyqhflwgg2q6dc3n671yp9wx"; depends=[curl data_table keyring lubridate]; }; REDCapR = derive2 { name="REDCapR"; version="1.1.0"; sha256="02d41mbplc7fb0yf6sf62fzfzai95vjqxhz2hkz7135w17s31j8r"; depends=[checkmate dplyr httr jsonlite magrittr readr rlang tibble tidyr]; }; - REDCapTidieR = derive2 { name="REDCapTidieR"; version="0.1.3"; sha256="1s479fcxgm5wmk2jf8psi921q8vzhv3zjqs5lsakjjfahj7md4gh"; depends=[checkmate dplyr purrr REDCapR rlang stringi stringr tibble tidyr tidyselect]; }; + REDCapTidieR = derive2 { name="REDCapTidieR"; version="0.2.0"; sha256="1hgxj0vp5k9hc1fids2379qkja0s3jankiqvi9pm7h4gvk33p7fx"; depends=[checkmate cli dplyr formattable lifecycle lobstr purrr REDCapR rlang stringi stringr tibble tidyr tidyselect]; }; REEMtree = derive2 { name="REEMtree"; version="0.90.4"; sha256="11m9k6xli3gqw2f9vwa9abpwsnxawi675zmi916yq2shws49m8xn"; depends=[nlme rpart]; }; REGENT = derive2 { name="REGENT"; version="1.0.6"; sha256="1f2sjqkhw3rbmwbcmx7l7imj696kblisi8y3fz77xygbcbxa6rmq"; depends=[]; }; REPLesentR = derive2 { name="REPLesentR"; version="0.4.1"; sha256="0rwd7hxk12f4f1kpj6sl424yhbxi3h9dz6km5awijazmgv95carz"; depends=[dat knitr modules]; }; @@ -3880,7 +3894,6 @@ in with self; { REPPlabShiny = derive2 { name="REPPlabShiny"; version="0.4.1"; sha256="0wim27jm01xbi316jfz5j30sid7z1wsznhrpmxrbd97d4312449w"; depends=[DT REPPlab shiny]; }; REPTILE = derive2 { name="REPTILE"; version="1.0"; sha256="11swy4jrmmb0xjjxm1wyxd628fxxcqnialvijdrjwjpdbvraz4gq"; depends=[doParallel flux foreach optparse randomForest]; }; REQS = derive2 { name="REQS"; version="0.8-13"; sha256="1yzd37kqkg477p501l6s8iah9pkjsnsbxmk32w0rji7jpj7r2rs5"; depends=[gtools]; }; - REREFACT = derive2 { name="REREFACT"; version="1.0"; sha256="0nggva4qfqlcs58df3sgiigw0z75l5kg8c1yh0k5qsvjnhiq19vn"; depends=[combinat gdata Matrix psych]; }; RESI = derive2 { name="RESI"; version="1.0.5"; sha256="1synv78b06v552glpj15jc5cfa5i5i8bcn1hqyvsv4d5d94qj4i3"; depends=[aod car clubSandwich lmtest nlme regtools sandwich]; }; RESS = derive2 { name="RESS"; version="1.3"; sha256="1vddmifp47ia0sk35rnjpvw6gr9ygygafqczq268h17i1qs6ar22"; depends=[]; }; REdaS = derive2 { name="REdaS"; version="0.9.4"; sha256="1bi04zaqg4plp1byspn97lrlny47l521y1jhiixy093g6p6lqj11"; depends=[]; }; @@ -3890,6 +3903,7 @@ in with self; { RFCCA = derive2 { name="RFCCA"; version="1.0.9"; sha256="15zabdqkgji58yxh3nndaj8ipap8av353d0cvx54y2gx7cxlmdf3"; depends=[CCA PMA]; }; RFLPtools = derive2 { name="RFLPtools"; version="2.0"; sha256="07hw0hyyxqy31qakkb410gb3i0g5jvpmigv5cqhxqss2cwzpch0d"; depends=[RColorBrewer]; }; RFOC = derive2 { name="RFOC"; version="3.4-6"; sha256="0cs5wmpvrlag9aisbfiwkvwcb3skv5z4sawl30krmsq49mzj7yhd"; depends=[GEOmap MASS RPMG RSEIS splancs]; }; + RFPM = derive2 { name="RFPM"; version="1.0"; sha256="1rhi1nn1xxc5qvxk2vwd96325pqwz45b2bvaq994glvlxniki3c1"; depends=[dplyr lawstat reshape2]; }; RFclust = derive2 { name="RFclust"; version="0.1.2"; sha256="04cynwsfs07j6kbpnpk4kx7p2a33y5qylpvydv29975z7p871vsm"; depends=[ConsensusClusterPlus randomForest]; }; RFishBC = derive2 { name="RFishBC"; version="0.2.4"; sha256="1wh1j5lciff1vgjwrmc2hhr0yfq289l6k917pzhpl5bk6r4ml0fs"; depends=[cli clisymbols crayon readbitmap rlang settings stringr tidyr withr]; }; RFmerge = derive2 { name="RFmerge"; version="0.1-10"; sha256="1gcdd0a0czimzmzq2izskdaj26cc7qchrwlhssvnh5k59yx54r4l"; depends=[pbapply randomForest raster sf sp zoo]; }; @@ -3918,7 +3932,7 @@ in with self; { RHMS = derive2 { name="RHMS"; version="1.7"; sha256="1fld5y39a4xq40wh23944ngcrkqk2pw8w9raxir9wn2z2nysr7zg"; depends=[GGally ggplot2 Hmisc network pso]; }; RHPCBenchmark = derive2 { name="RHPCBenchmark"; version="0.1.0"; sha256="1f94d8z15ybqgc2pccsi1m6563xf26ygri6f4pwxkqjmxkxnk34y"; depends=[cluster Matrix mvtnorm]; }; RHRT = derive2 { name="RHRT"; version="1.0.1"; sha256="0km93m1bgh64r174bm5pj2hhsa39kghjrzjlmpdrxr9wa1z8wdni"; depends=[]; }; - RHRV = derive2 { name="RHRV"; version="4.2.6"; sha256="1rdfq1xnimli709waypwhw1v277hxhmiy7ziizgqi4522nip4h49"; depends=[lomb nonlinearTseries waveslim]; }; + RHRV = derive2 { name="RHRV"; version="4.2.7"; sha256="0w4r2sk1h9wxmhs5l2dk9gzr85wrss3m4qi67mj37cjd4qmmn1wi"; depends=[lomb nonlinearTseries waveslim]; }; RHSDB = derive2 { name="RHSDB"; version="0.2.0"; sha256="0k23vdb9p2c2hnac8rk2dnls47fw5qc66ifhx47q8myi1479vvll"; depends=[]; }; RHawkes = derive2 { name="RHawkes"; version="1.0"; sha256="1ishfdbyk9g6lh5q6apbaw7vh9cfwyykag27imrfpx3c40sbwmd4"; depends=[IHSEP]; }; RHclust = derive2 { name="RHclust"; version="1.1.0"; sha256="1i28bxkgdxlc216vsgambzc027wjnw0iaibry6m1vz9as2yy1fry"; depends=[Runuran]; }; @@ -3926,9 +3940,9 @@ in with self; { RI2by2 = derive2 { name="RI2by2"; version="1.3"; sha256="0smc0fb9anq5ih9zx2slfbqyx02njm0hc7g22gpfggskmxf2l509"; depends=[gtools Rcpp]; }; RIA = derive2 { name="RIA"; version="1.6.0"; sha256="0vj92plwmklb0i9h6zr18dnfwi3p7wkajjjxg0vfvm4pps9pkfwp"; depends=[nat oro_dicom oro_nifti reticulate]; }; RIFS = derive2 { name="RIFS"; version="0.1.6"; sha256="0cbz2vg8adqjkbn9r8cikqxlzhk01ba3nlnh8rqbwdcpiz90l1ip"; depends=[]; }; - RISCA = derive2 { name="RISCA"; version="1.0.1"; sha256="1r58s8ss64l7pckc5k2sqdsnp4kq2aagclbj5dxw6662y159m84d"; depends=[caret cubature date doParallel dplyr dvmisc flexsurv foreach glmnet glmnetUtils hdnom kernlab MASS mosaic mosaicCalc mvtnorm nlme nnet prodlim randomForestSRC relsurv reticulate rpart statmod SuperLearner survival survivalmodels timeROC zoo]; }; + RISCA = derive2 { name="RISCA"; version="1.0.3"; sha256="0r4wcyfa4nx9473hacm4dpz374zbp23idgbyanl6wcaw4mx085v0"; depends=[caret cubature date doParallel dplyr flexsurv foreach glmnet glmnetUtils hdnom kernlab MASS mosaic mosaicCalc mvtnorm nlme nnet prodlim randomForestSRC relsurv reticulate rpart statmod SuperLearner survival survivalmodels timeROC zoo]; }; RISmed = derive2 { name="RISmed"; version="2.3.0"; sha256="0vpi88gzi9r85v6nhjz9jbw671zkrmyazwna2z881346wfyr3l8b"; depends=[httr xml2]; }; - RIbench = derive2 { name="RIbench"; version="1.0.1"; sha256="0l42yf2gzsi1c46gijc7581bdc856345ylsw10acmzhhhlj16sw1"; depends=[data_table digest optparse RColorBrewer]; }; + RIbench = derive2 { name="RIbench"; version="1.0.2"; sha256="0dfxwcm3q8bgwprv0vn440w3186g04a4rm4i33pnpvg2c0qph0sp"; depends=[data_table digest optparse RColorBrewer]; }; RIdeogram = derive2 { name="RIdeogram"; version="0.2.2"; sha256="0wvzlnisnxwzdzfh8ph4yspr8abi5qk6p4z2qa14ykzn8yry61ni"; depends=[ggplot2 grImport2 rsvg scales tidyr]; }; RImageJROI = derive2 { name="RImageJROI"; version="0.1.2"; sha256="1rsc8iv80zyjzpj80yyyhndxvskdbldsfc2gskrr1r8yh5gmhn23"; depends=[spatstat spatstat_geom]; }; RImagePalette = derive2 { name="RImagePalette"; version="0.1.1"; sha256="054w8xzsn330qg7piq6ajhji9na2swkkdis2567cy3q099npfl5v"; depends=[ggplot2]; }; @@ -3937,11 +3951,11 @@ in with self; { RInside = derive2 { name="RInside"; version="0.2.17"; sha256="0j23h8qxqn95d0hqx9wcb52hc8w9qacjnk96lxlsdjrlxr28rqhb"; depends=[Rcpp]; }; RItools = derive2 { name="RItools"; version="0.3-1"; sha256="07i08cjscdylxbxl53qvr38pagssiqx3zcd0gyj28w0n6k3rq10x"; depends=[abind dplyr ggplot2 SparseM survival svd tibble tidyr xtable]; }; RJDBC = derive2 { name="RJDBC"; version="0.2-10"; sha256="06b2gw76jwmm3lw3knmn6slc6824d4gzry94n96d97ii4fm4gwrp"; depends=[DBI rJava]; }; - RJDemetra = derive2 { name="RJDemetra"; version="0.2.0"; sha256="1l97zicd0n3kvyjcrfq09wc8wawnfrs59n5nrx6s2dzh3cvyxvxr"; depends=[rJava]; }; + RJDemetra = derive2 { name="RJDemetra"; version="0.2.1"; sha256="1g54kzfb97zba5898bz90cba5nyjkhd00hw3azsaic6xa7dwz5gr"; depends=[rJava]; }; RJSDMX = derive2 { name="RJSDMX"; version="2.3-3.1"; sha256="1sp20dcg6d0yrmllqsh486v8frgi9bssd8zibc9165y5v8yjg9y6"; depends=[rJava zoo]; }; RJSONIO = derive2 { name="RJSONIO"; version="1.3-1.6"; sha256="17x0ayk7daprbc8w2hvb2jl9mfnw4dic9yc3sr5adcjqfzmcklc2"; depends=[]; }; RJSplot = derive2 { name="RJSplot"; version="2.7"; sha256="02q5isc137nx7qil2p3903xfsjwk54507rs72dfaiy6a8scys5j9"; depends=[]; }; - RJafroc = derive2 { name="RJafroc"; version="2.1.1"; sha256="1rv1daz1d5iak5s71ldvdqwcrxzgfzd2cl27hgd9y2spwfk81fns"; depends=[bbmle binom dplyr ggplot2 mvtnorm numDeriv openxlsx Rcpp readxl stringr]; }; + RJafroc = derive2 { name="RJafroc"; version="2.1.2"; sha256="1immjb2313ss7pc61m3y59h6m3i0257lhvrkkvhrprl9jsyanfca"; depends=[bbmle binom dplyr ggplot2 mvtnorm numDeriv openxlsx Rcpp readxl stringr]; }; RJcluster = derive2 { name="RJcluster"; version="3.2.4"; sha256="157dmi5gksq7s16ip4n9j5bj9s9bawl078rh13s1xxyr6f51yp09"; depends=[foreach infotheo matrixStats mclust profvis Rcpp RcppArmadillo rlang]; }; RKEA = derive2 { name="RKEA"; version="0.0-6"; sha256="1dncplg83b4zznh1zh90wr8jv5259cy93imrry86c5kqdijmhrrp"; depends=[rJava RKEAjars tm]; }; RKEAjars = derive2 { name="RKEAjars"; version="5.0-4"; sha256="1j4643xc8k3zy4rv0h8dd154jafihnjr43wzz3d93j11g2w9xhq3"; depends=[rJava]; }; @@ -3973,6 +3987,7 @@ in with self; { RMOPI = derive2 { name="RMOPI"; version="1.1"; sha256="0jjli73b1xinrkq0fndfaan1mgf6yb29skqvva4lib0zgd8p1v21"; depends=[fPortfolio ggplot2 lubridate MASS PerformanceAnalytics rugarch tibble timeDate timeSeries TTR xts]; }; RMPSH = derive2 { name="RMPSH"; version="1.1.1"; sha256="0jffp8942ydwain23kvy7q6avpxxsb77jj1mg4bq43fwgfc9nqjy"; depends=[Rcpp]; }; RMSNumpress = derive2 { name="RMSNumpress"; version="1.0.1"; sha256="1y86dpa8kpq2bkvl90qwghxrnll5h3y9ycyvmamm4kd7ivy59sxi"; depends=[Rcpp]; }; + RMT4DS = derive2 { name="RMT4DS"; version="0.0.1"; sha256="05fwhd36lvi21gr5nz8mgxk5qzw4vxkrgw499p11aa9qhcn8xq4g"; depends=[lpSolve MASS mpoly nleqslv pracma quadprog rARPACK RMTstat rootSolve]; }; RMTL = derive2 { name="RMTL"; version="0.9.9"; sha256="1wyv9l1xgdm4s8ibjw3kwfsr77hxkxj80cgvkfv4mdir0bxm84b4"; depends=[corpcor doParallel foreach MASS psych]; }; RMThreshold = derive2 { name="RMThreshold"; version="1.1"; sha256="0wkc42vcggib002ad6ch43h6avpdgl12szrrrfd2p0wl72cwn5n1"; depends=[Matrix png]; }; RMTstat = derive2 { name="RMTstat"; version="0.3.1"; sha256="1r1a2sdqv64m9cpm2pz6r8abf7l810126ayd8iq3gx86c7bjfj5v"; depends=[]; }; @@ -3985,7 +4000,7 @@ in with self; { RMixtComp = derive2 { name="RMixtComp"; version="4.1.3"; sha256="0v1qhqvl0s2b93xhykjr99h5gbz48l9npp0vyazh0ncx8gnxrzfl"; depends=[ggplot2 plotly RMixtCompIO RMixtCompUtilities scales]; }; RMixtCompIO = derive2 { name="RMixtCompIO"; version="4.0.8"; sha256="0q8k8arnrgwvrsl6f2p0a53vk5krynwgjfsdp71z9c1wjq22zsa3"; depends=[BH doParallel foreach Rcpp RcppEigen]; }; RMixtCompUtilities = derive2 { name="RMixtCompUtilities"; version="4.1.4"; sha256="1rhdmiap7xm96igclas67dz8naywjkddydbk9m3hp0d0zhgblc5i"; depends=[ggplot2 plotly scales]; }; - RMySQL = derive2 { name="RMySQL"; version="0.10.24"; sha256="0hbjcf0gzkkg8h50msj4a6ymax9s3j4aw44jl1mqcxkdmfn9l6ya"; depends=[DBI]; }; + RMySQL = derive2 { name="RMySQL"; version="0.10.25"; sha256="1527ba5vqg4ss6rqxrkxa1a66r1m9h4zmdnv9xdzva8fv2dhy4zd"; depends=[DBI]; }; RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.4"; sha256="16ab0p0378j4vvcazynffsgx1rq32llf1sz4h4pp5lrx820j6qvx"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; }; RNAseqQC = derive2 { name="RNAseqQC"; version="0.1.4"; sha256="0f9k3ba2w75sjywngmvp7g10837wx65v112inpag3rplk9ljahvp"; depends=[AnnotationFilter AnnotationHub circlize ComplexHeatmap cowplot DESeq2 dplyr ensembldb gghighlight ggplot2 ggpointdensity ggrepel ggsci magrittr matrixStats patchwork purrr RColorBrewer stringr SummarizedExperiment tibble tidyr tidyselect vsn]; }; RNAsmc = derive2 { name="RNAsmc"; version="0.7.0"; sha256="13biayrgs9qb06w3rkwrmplnrm93zlygsfm7chy6jbp15xl3bf0c"; depends=[circlize RRNA]; }; @@ -4001,8 +4016,8 @@ in with self; { RNetCDF = derive2 { name="RNetCDF"; version="2.6-1"; sha256="02llp0ar5i81lxmsr1iznwhxk37ihkplbyi7f0za2dnqp1b0qrwz"; depends=[]; }; RNetLogo = derive2 { name="RNetLogo"; version="1.0-4"; sha256="1z7jp454k197c0zbkn64zmf25wadkiznv3w2csgiz917cbx6xcn1"; depends=[igraph rJava]; }; RNewsflow = derive2 { name="RNewsflow"; version="1.2.6"; sha256="06hz5fim5ad8kbpc4crs9vdn7k9q5phhzscd46s4xk0b3n0i8wi1"; depends=[data_table igraph Matrix quanteda Rcpp RcppEigen RcppProgress scales stringi tm wordcloud]; }; - RNifti = derive2 { name="RNifti"; version="1.4.1"; sha256="058jzhw91wd4hb9l06mn0ihf1yp2fapz1fyb32w9bjwxq7qxvii2"; depends=[Rcpp]; }; - RNiftyReg = derive2 { name="RNiftyReg"; version="2.7.0"; sha256="0y7s2zcjjnb9jakdhyd6hmdj9axdpvbnhijs2finnlwc0d09jpz1"; depends=[ore Rcpp RcppEigen RNifti]; }; + RNifti = derive2 { name="RNifti"; version="1.4.3"; sha256="1w627brzag9laxsfrr1kxh07glycl8l1n5xf5frn8m0jzvrn3d50"; depends=[Rcpp]; }; + RNiftyReg = derive2 { name="RNiftyReg"; version="2.7.1"; sha256="1hmcd89c1qw6zyhshz1myyf2xjwhz5gl3hr46nny5qgh3z4ylyb1"; depends=[ore Rcpp RcppEigen RNifti]; }; ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; ROCFTP_MMS = derive2 { name="ROCFTP.MMS"; version="1.0.0"; sha256="022cz5vh79c50r31rxn5fjghl65wn1ns8xdgq3b05hjf9psjvg4x"; depends=[vctrs]; }; ROCR = derive2 { name="ROCR"; version="1.0-11"; sha256="0amvvrkiflmr3qygrsgrsja4gaf2v6r6h6i2bgpsm8r069vmlf2p"; depends=[gplots]; }; @@ -4013,7 +4028,7 @@ in with self; { ROCket = derive2 { name="ROCket"; version="1.0.1"; sha256="1p5b1408fdq8z64b7ihwcdxprg5rfiq4z5annxzvmizzr6qwn8qa"; depends=[data_table]; }; ROCnReg = derive2 { name="ROCnReg"; version="1.0-7"; sha256="09v7qi5q5m969j1g6fwgb4nsls60vcfrz1z1v111mv9dzq85dxxp"; depends=[lattice MASS Matrix moments nor1mix np pbivnorm spatstat spatstat_geom]; }; ROCpsych = derive2 { name="ROCpsych"; version="1.3"; sha256="0fcrhhxmvrrchbswb94liahbgz5pfhs86fbj0vby7vnakrhngh7v"; depends=[pROC reportROC]; }; - RODBC = derive2 { name="RODBC"; version="1.3-19"; sha256="1zjf5mfv906kxy4cn2l10z35l7m5878aqjx9yj6pr2ydfxlbvz1s"; depends=[]; }; + RODBC = derive2 { name="RODBC"; version="1.3-20"; sha256="1mpv2315jbbg085wbrgzvlk11apkn32slq3j4jjbw0i5rb8pn5bz"; depends=[]; }; RODBCDBI = derive2 { name="RODBCDBI"; version="0.1.1"; sha256="0jkcc1lm8drsx1pkfj5h6rlbr98cgpvbf9ndzdwr048f3s8gd26i"; depends=[DBI RODBC]; }; ROI = derive2 { name="ROI"; version="1.0-0"; sha256="0hd3l219wanhanbf4pgrh1pbxah50gf5qg2gff1djdr1xns7zn5h"; depends=[registry slam]; }; ROI_models_globalOptTests = derive2 { name="ROI.models.globalOptTests"; version="1.1-1"; sha256="1zj636cmjhhqbn6hh6760bi5y8lf6y7qqkz72yijq7dj2y1za2ph"; depends=[globalOptTests ROI]; }; @@ -4040,11 +4055,11 @@ in with self; { ROOPSD = derive2 { name="ROOPSD"; version="0.3.8"; sha256="0bndjhnshifbx02scw7d48wszar51vyv735a2r0chzq7qjj7drc3"; depends=[Lmoments numDeriv R6]; }; ROSE = derive2 { name="ROSE"; version="0.0-4"; sha256="0y3v9zkgaxpv4f4zn22ra1gkkqg5hdz8js47ppciqahfydjbfl3p"; depends=[]; }; ROlogit = derive2 { name="ROlogit"; version="0.1.2"; sha256="09j9c24f7plzpnnhpmzdi4gapb7w1377ksjwk6i2xpyr4bfsrr5k"; depends=[evd survival]; }; - ROpenCVLite = derive2 { name="ROpenCVLite"; version="4.60.2"; sha256="1k9s5irb1k01f7y5islyvh6wm23fpys7wzkqgv2zgbmvqqaxj7ji"; depends=[pkgbuild]; }; + ROpenCVLite = derive2 { name="ROpenCVLite"; version="4.60.3"; sha256="1529c5wnz7y50pzgq9m7gg7p2pmasdzpyqfmab6zxg87bmab4y61"; depends=[pkgbuild]; }; ROpenDota = derive2 { name="ROpenDota"; version="0.1.2"; sha256="17s73yj2w5hlpy09ad83m4s2d9shg5h4zg64wvbp1ivyvpp7l308"; depends=[jsonlite RCurl]; }; ROpenFIGI = derive2 { name="ROpenFIGI"; version="0.2.8"; sha256="0fvd25vsqkgi3jv4s2lnfag5qksyzyb48d7rhfw6z8piz37n4xaj"; depends=[httr jsonlite]; }; ROpenWeatherMap = derive2 { name="ROpenWeatherMap"; version="1.1"; sha256="0h1yw93v06bx8svhghh1fsrf837qax9896klh64b06djpgg9ngb9"; depends=[httr jsonlite RCurl]; }; - ROptEst = derive2 { name="ROptEst"; version="1.2.1"; sha256="0gjdgynmg8499jm5gbnmjipnn1bl7h1rja8lhgbaw48lmq5sr801"; depends=[distr distrEx distrMod MASS RandVar RobAStBase startupmsg]; }; + ROptEst = derive2 { name="ROptEst"; version="1.3.1"; sha256="1p0aapqyb22z48b44yh88wzrn36bq9djdajgrc0w5z1p0kj3vq0b"; depends=[distr distrEx distrMod MASS RandVar RobAStBase startupmsg]; }; ROptEstOld = derive2 { name="ROptEstOld"; version="1.2.0"; sha256="08njyxb8bnjb9nas3szqvqkfv83lc0187b7biis2nl2rgq6rljzy"; depends=[distr distrEx evd RandVar]; }; ROptRegTS = derive2 { name="ROptRegTS"; version="1.2.0"; sha256="1wy54kjrpfvj2k9ndmq27zzgx6aygh85f7c83g7gn8d5b2y91qy4"; depends=[distr distrEx RandVar ROptEstOld]; }; ROptSpace = derive2 { name="ROptSpace"; version="0.2.3"; sha256="18fz285hr4fdkkbs4b13gmwz0sqbgk6di6m3c6ic0wvs35mpmcfz"; depends=[Rcpp RcppArmadillo Rdpack]; }; @@ -4063,9 +4078,9 @@ in with self; { RPhosFate = derive2 { name="RPhosFate"; version="1.0.2"; sha256="17905kbi8mh6356kkn5slyqk6r134j28ipk0sdv0y1jxrgjdyvzq"; depends=[checkmate hydroGOF raster Rcpp RcppArmadillo spatstat_geom yaml]; }; RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.7-4"; sha256="1ijnsly8wgy6cfib4xvdaz2g9hk1gzg7q52r37zkvc7jjh0gdbdn"; depends=[DBI]; }; RPostgres = derive2 { name="RPostgres"; version="1.4.4"; sha256="1z6diaq4kwinl97d1v9cb96j8mrkj2s2v4ml1vykgy1jqi40dk69"; depends=[bit64 blob DBI hms lubridate plogr Rcpp withr]; }; - RPresto = derive2 { name="RPresto"; version="1.4.0"; sha256="1w6wq4j6c4xdsr0n5yf8fcmgm5yp2nsfydi4zdi1s7chkhr9y50d"; depends=[bit64 DBI dbplyr dplyr httr jsonlite lifecycle lubridate openssl progress purrr rlang stringi tibble]; }; + RPresto = derive2 { name="RPresto"; version="1.4.1"; sha256="04xvy6mnmi6aymwm7wp97i85q7hh80fkjibjnbpi76i0lpa06wzh"; depends=[bit64 DBI dbplyr dplyr httr jsonlite lifecycle lubridate openssl progress purrr rlang stringi tibble]; }; RProbSup = derive2 { name="RProbSup"; version="3.0"; sha256="1z53zgx26fwfhb1vxad0l51v34y2lsplhwbjaf4r44rngdaw9h5n"; depends=[]; }; - RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.19"; sha256="0iwaclf5xh4792l7pmp64y9lymq1jy8dv6byc0059jak1p7wsyb3"; depends=[Rcpp]; }; + RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.20"; sha256="1q5wd586334472584r93whnwxy4yyycn9l891g6m6wh7v0884q76"; depends=[Rcpp]; }; RPscoring = derive2 { name="RPscoring"; version="0.1.0"; sha256="063w83k9krwv3wvw2iq8bqkhjaj26as14d9g99l8jxfc02ljv1rr"; depends=[]; }; RPtests = derive2 { name="RPtests"; version="0.1.5"; sha256="04j4nqy2qxn1pa8ar0j0wgzkpd624983wwhd73l1ax7fnskx0yhh"; depends=[glmnet randomForest Rcpp]; }; RPublica = derive2 { name="RPublica"; version="0.1.3"; sha256="1w2pn1g44a00ls8kkzj53a739pq6vzp38px2k0yh10rlzimmb21l"; depends=[curl httr jsonlite]; }; @@ -4084,9 +4099,10 @@ in with self; { RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; RRedshiftSQL = derive2 { name="RRedshiftSQL"; version="0.1.2"; sha256="03jbml8d19hcg6achnyc4hcnl5j10yvsx59j80r46zyn0flsnizq"; depends=[DBI RPostgreSQL]; }; RRphylo = derive2 { name="RRphylo"; version="2.7.0"; sha256="09d3nbm47rhn9z0s5x4ly541m3b3hcsfsxd1dnrxkiqkyjy7c4h0"; depends=[ape doParallel emmeans foreach phytools]; }; + RRreg = derive2 { name="RRreg"; version="0.7.5"; sha256="105hv4izzbm5b89mg1k99zkms8ppjafj6x2fvh71yhaszh79fh88"; depends=[doParallel foreach lme4]; }; RSA = derive2 { name="RSA"; version="0.10.4"; sha256="0i0li587i6bjnmz9d1j1dyhpy7bfnq6298wr67fygcxfaszij16b"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer]; }; RSADBE = derive2 { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; }; - RSAGA = derive2 { name="RSAGA"; version="1.3.0"; sha256="1y1zhy2bxkfsv8vmnxjdg9i5rqkvs32kw8h5z1mclv953srgkpn9"; depends=[gstat magrittr plyr rgdal shapefiles stringr]; }; + RSAGA = derive2 { name="RSAGA"; version="1.4.0"; sha256="0mdirx7d3z4l0k54wa6rb1c5gma470ypifd3flj2287m8y2wjqq5"; depends=[gstat magrittr plyr shapefiles stringr]; }; RSAlgaeR = derive2 { name="RSAlgaeR"; version="1.0.0"; sha256="1hp0v2vkj9ixiv541d53kyl0ph3jsdc5w98r81gv5ck5ixrp6bxp"; depends=[cvTools ggplot2 hydroGOF lubridate mblm plyr]; }; RSBJson = derive2 { name="RSBJson"; version="1.1.2"; sha256="1bzy0pgj6kg447xnnjj643hk8gyzzaaliiw0z98r19959bqbvgq3"; depends=[jsonlite]; }; RSC = derive2 { name="RSC"; version="2.0.2"; sha256="0d7b8q5r3sb29h3kj0dpd1ldm6lymqkpdjsg216m4lgqcikkng6l"; depends=[doParallel foreach Matrix]; }; @@ -4100,23 +4116,22 @@ in with self; { RSKC = derive2 { name="RSKC"; version="2.4.2"; sha256="0r9gpwhzscb6rbba3dg13p78pvskahgvsd59biag0shyii3xvwpm"; depends=[flexclust]; }; RSNNS = derive2 { name="RSNNS"; version="0.4-14"; sha256="081c20dcac8xxb0sp7kwzm4b7h5jrgcxxsfckjbxbda95g5n4qkz"; depends=[Rcpp]; }; RSQL = derive2 { name="RSQL"; version="0.2.1"; sha256="10s71kgsa37m937lr7kai8c73iw5fwb9rnhkf65wz0w2qha01zaz"; depends=[DBI lgr R6]; }; - RSQLite = derive2 { name="RSQLite"; version="2.2.18"; sha256="1sjbjh4rhaagmhiv2rg3csakbsc62qwyawz5vhywg3mdcbdnl6b2"; depends=[bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; + RSQLite = derive2 { name="RSQLite"; version="2.2.19"; sha256="11jzg3ywzaql3zwp7cwql1nilz8pvbz903whyh0d447rs0xnn3vj"; depends=[bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; RSSL = derive2 { name="RSSL"; version="0.9.5"; sha256="1h94dhs5yl1i7n153rbmj883iz3hql0b0cr12357nk4nvf36yih8"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; }; RSSOP = derive2 { name="RSSOP"; version="1.1"; sha256="119xrxpaf68qdb2kj2pbaja6im2nbxsgibb1bnlpnc3fcxkmqcsf"; depends=[]; }; RSSampling = derive2 { name="RSSampling"; version="1.0"; sha256="0p10l7qmksx4ysz1jb84f9nbqzig8wxhwy33yk8hq29nb5i4c9ik"; depends=[LearnBayes]; }; RSarules = derive2 { name="RSarules"; version="1.0"; sha256="0lrql4q45hyhqbix86ixl12mknnjbz3137gx2zkvqpz91bsk145j"; depends=[arules Matrix]; }; RSauceLabs = derive2 { name="RSauceLabs"; version="0.1.6"; sha256="1p7hw6vnlg6w5ggmfpc3q3s6n1fikjkjnxzz97jifiy0zwn5dp9i"; depends=[data_table httr jsonlite whisker xml2]; }; RScelestial = derive2 { name="RScelestial"; version="1.0.3"; sha256="1bxp3xl90s9fblm6d2mmsnws4iv9f3kxj8cs55kmbakz5dq4nqxc"; depends=[Rcpp]; }; - RSclient = derive2 { name="RSclient"; version="0.7-8"; sha256="0iy2y63yl35im6n8hg77gzfr6mk7z4yi4lpl50mig1jj9rvqw3n5"; depends=[]; }; - RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; }; + RSclient = derive2 { name="RSclient"; version="0.7-9"; sha256="04xppfz2gxf21jmcz9phxpaxys06kqnw77v1sy9qqd3n0yywzihv"; depends=[]; }; RSelenium = derive2 { name="RSelenium"; version="1.7.9"; sha256="18hd0gfpblg9ij99ik7ccc60q9dxha89n5rrwrrzx498c5sscjg2"; depends=[caTools httr wdman]; }; RSentiment = derive2 { name="RSentiment"; version="2.2.2"; sha256="15d1llzxg1apkwykpb7pic2d5lfj9i9a55hab067wrz2yq5jsyfa"; depends=[NLP openNLP plyr stringr]; }; - RSiena = derive2 { name="RSiena"; version="1.3.13"; sha256="0rc56g4f75s4nxmja4117mhynwh340kidp0amm2jdm1gda9wwp32"; depends=[lattice MASS Matrix xtable]; }; + RSiena = derive2 { name="RSiena"; version="1.3.14"; sha256="1g36l9j68d4lgwx5m67ccny7kjjv3lk5lxqawv1pz1l0d4vdmhsd"; depends=[lattice MASS Matrix xtable]; }; RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.16"; sha256="1plcmxj6sahdy3vvcmxry8cbq1j23bqzhnhn593bkwmzczka24cy"; depends=[base64enc digest httr jsonlite plyr stringr]; }; RSizeBiased = derive2 { name="RSizeBiased"; version="0.1.0"; sha256="0qh1f9998c62cph590mszbwh12mpbvcnvffmxw4mib6wd4dgl723"; depends=[pracma]; }; RSmallTelescopes = derive2 { name="RSmallTelescopes"; version="1.0.4"; sha256="16c0pfq9qp0c9b7aljp753iilk3dys14h77anwps8xg7j2lizvbh"; depends=[]; }; RSmartlyIO = derive2 { name="RSmartlyIO"; version="0.1.3"; sha256="02zswadv65a5p5q9rr12f819mh7jjqk8xj1kc1c0wqvr8dgz7fx9"; depends=[RCurl]; }; - RSocrata = derive2 { name="RSocrata"; version="1.7.11-2"; sha256="0pwfz18931594n84b5l0y8bplqz5iw622ji4f2l9qkbg29jxq5gg"; depends=[httr jsonlite mime plyr]; }; + RSocrata = derive2 { name="RSocrata"; version="1.7.12-4"; sha256="07m8jp6av12z0csl4xln1y22s3nq0jwx7bk1brs3v0v38m86j86w"; depends=[httr jsonlite mime plyr]; }; RSpectra = derive2 { name="RSpectra"; version="0.16-1"; sha256="16ij84wgpsmqmnxqiii8dgihy3bfxazry9znmckhwzba7m0d79fb"; depends=[Matrix Rcpp RcppEigen]; }; RSpincalc = derive2 { name="RSpincalc"; version="1.0.2"; sha256="09fjwfz1bzpbca1bpzxj18ki8wh9mrr5h6k75sc97cyhlixqd37s"; depends=[]; }; RSqlParser = derive2 { name="RSqlParser"; version="1.5"; sha256="0q5wa7bq7m94xx8hcf9p29v5vvkrqzygs3v6yy5xl6jgvshvscvi"; depends=[stringi stringr]; }; @@ -4125,18 +4140,17 @@ in with self; { RStorm = derive2 { name="RStorm"; version="1.0"; sha256="1n2kiy9b8w6rnv2zmzbl22grwibf619hadf2cjq1ch7rmbr7qb65"; depends=[plyr]; }; RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; }; RSurveillance = derive2 { name="RSurveillance"; version="0.2.1"; sha256="02jbm9xl2jg9cgq53i1cvj1rivhprgd07k1rxsayzrskvbmvyjpd"; depends=[epiR epitools mc2d]; }; - RSurvey = derive2 { name="RSurvey"; version="0.9.3"; sha256="0yk969jdvpgv01zbmk4zyxcmrbdizh37bddj1k128ndyf191z37x"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; }; RTCC = derive2 { name="RTCC"; version="0.1.1"; sha256="0bnm0qwikbbpq3i5q5fwmsgi8fn7w0xk993ngpiqbrf5my3h93kc"; depends=[matrixStats Rcpp testthat vegan]; }; RTD = derive2 { name="RTD"; version="0.4.1"; sha256="0zsv62hx1y9q5a6rd8ri91ff64671b84jr3f88h0q4yni2mribhr"; depends=[dplyr httr jsonlite purrr RcppMsgPack readr urltools uuid]; }; RTDE = derive2 { name="RTDE"; version="0.2-1"; sha256="1dkv0g760384jmyypffl5kbnsancjx272j91ffpgmg3lmsy8nhqq"; depends=[]; }; RTIGER = derive2 { name="RTIGER"; version="1.99.0"; sha256="018y0hs06cpmb2k74xdj0cnlzr9aljbizj5jf9h8frpn9p57d6rv"; depends=[e1071 GenomeInfoDb GenomicRanges ggplot2 IRanges JuliaCall qpdf reshape2 TailRank]; }; - RTL = derive2 { name="RTL"; version="1.2.0"; sha256="0k68505zs08l8gpn7f5r3la5f2053laganl8af3b8shi5ymqv68g"; depends=[dplyr ggplot2 glue httr jsonlite lifecycle lubridate magrittr plotly purrr Rcpp RCurl readr rlang stringr tibble tidyr timetk tsibble xts zoo]; }; + RTL = derive2 { name="RTL"; version="1.3.1"; sha256="1ncbv5mk339xjf4jwbgz2bdxbv53rf9557krp9g1nazzcs1wlvjg"; depends=[dplyr ggplot2 glue httr jsonlite lifecycle lubridate magrittr plotly purrr Rcpp RCurl readr rlang stringr tibble tidyr tidyselect timetk tsibble TTR xts zoo]; }; RTOMO = derive2 { name="RTOMO"; version="1.1-6"; sha256="03jb96ahzgp662vj2v65giv8ss61vad5w26kvq8hg9q06z879jza"; depends=[GEOmap RPMG RSEIS splancs]; }; RTTWebClient = derive2 { name="RTTWebClient"; version="0.1.3"; sha256="1d4dmw7z90nih9bzajlyqgqvpfmpkxwyhw0w56q396kvw8k644cp"; depends=[base64enc data_table digest httr jsonlite withr]; }; RTaxometrics = derive2 { name="RTaxometrics"; version="3.2"; sha256="0nrj5iccxqj3nk28s9z6bncpih5zq2nz4pylmm0pkpl5dfz923m4"; depends=[]; }; RTextTools = derive2 { name="RTextTools"; version="1.4.3"; sha256="0fxjviqc36k06rn8xzbi8ylzzj9zgf3zsp6xv0kssakss1a45lzz"; depends=[caTools e1071 glmnet ipred nnet randomForest SparseM tau tm tree]; }; RTransferEntropy = derive2 { name="RTransferEntropy"; version="0.2.14"; sha256="0sy2jgdy8lmvazgyv196z327r14202243f5g8wl4nck737x0i7qh"; depends=[future future_apply Rcpp]; }; - RTriangle = derive2 { name="RTriangle"; version="1.6-0.10"; sha256="07ya95gmv53i2argqwgad6wd4sslql2wl1rkvsmgsvmhsb4wp9hd"; depends=[]; }; + RTriangle = derive2 { name="RTriangle"; version="1.6-0.11"; sha256="0m6r1k7ryl6nxxfkqhq2wrg6878yirp5mdmyaxpg8wxkribp7yr3"; depends=[]; }; RUVIIIC = derive2 { name="RUVIIIC"; version="1.0.19"; sha256="1px87p4nmdgkxwarsqyc91kmwr13dy16c1qqqc86qlwm2w46smf6"; depends=[progress Rcpp RcppEigen RcppProgress RSpectra]; }; RUnit = derive2 { name="RUnit"; version="0.4.32"; sha256="1wc1gwb7yw7phf8b0gkig6c23klya3ax11c6i4s0f049k42r78r3"; depends=[]; }; RVA = derive2 { name="RVA"; version="0.0.5"; sha256="1a0av2vhqnkc4w76q5dhds0p12icmkkxyr1d04rsd83srwkwh4fb"; depends=[circlize clusterProfiler ComplexHeatmap data_table dplyr edgeR ggplot2 ggpubr gridExtra GSEABase GSVAdata haven msigdbr org_Hs_eg_db plotly purrr rlang rWikiPathways stringr tibble tidyr XML]; }; @@ -4162,10 +4176,10 @@ in with self; { RZigZag = derive2 { name="RZigZag"; version="0.2.1"; sha256="1civ8qrk5y95775vzkd2m5arqczgan584r632ixy4q76nd5wa8zc"; depends=[Rcpp RcppEigen]; }; RZooRoH = derive2 { name="RZooRoH"; version="0.3.1"; sha256="090mcy6czipvidprj87vyfb2wdipy08xjn130qzs5qdq9bnb6a14"; depends=[data_table doParallel foreach iterators RColorBrewer]; }; RaJIVE = derive2 { name="RaJIVE"; version="1.0"; sha256="1r3csf3xpk6rx494bqamb9b8dhj1169cng6gdi52h62m8vchnak5"; depends=[doParallel foreach ggplot2]; }; - RaMS = derive2 { name="RaMS"; version="1.0.0"; sha256="101vdghn18w2cj8n5bm1gd81c298w2drs1d2sjaijkji7i74z2c6"; depends=[base64enc data_table xml2]; }; + RaMS = derive2 { name="RaMS"; version="1.3.0"; sha256="0428ys9mpw483g8i5cvnps7nhvcfg7iafma8vwf641hf7c9da0f6"; depends=[base64enc data_table xml2]; }; RaProR = derive2 { name="RaProR"; version="1.1-5"; sha256="11hwg609pjcd13qnbchbs86c3q8f4nmh1xfxg3dsiijljl6lzx3n"; depends=[]; }; RaSEn = derive2 { name="RaSEn"; version="3.0.0"; sha256="1a7jvyvvhzn4aifnhjldn5jr6sxh16b67x335p8wh8g24yvvglvw"; depends=[caret class doParallel e1071 FNN foreach formatR ggplot2 glmnet gridExtra KernelKnn MASS ModelMetrics nnet randomForest ranger rpart]; }; - RaceID = derive2 { name="RaceID"; version="0.2.6"; sha256="0kx56ibp4kf8k6m9mx2cgvra53wanfi7q99pwzlhcj7a3p2xs7yf"; depends=[cluster coop FateID FNN fpc ggplot2 harmony ica igraph irlba leiden locfit MASS Matrix matrixStats pheatmap princurve propr quadprog randomForest RColorBrewer Rcpp Rtsne runner umap vegan]; }; + RaceID = derive2 { name="RaceID"; version="0.2.8"; sha256="0pfs4hf52xnb55pmcl3ypzqv77vn61v6q7485yr36agz42y6jmmg"; depends=[cluster coop FateID FNN fpc ggplot2 harmony ica igraph irlba leiden locfit MASS Matrix matrixStats pheatmap princurve quadprog randomForest RColorBrewer Rcpp Rtsne runner umap vegan]; }; RadData = derive2 { name="RadData"; version="1.0.1"; sha256="053i6r0j58dws1qisl2701n0fwzrfn5brdx3dcab8xmpzg6s0036"; depends=[]; }; RadOnc = derive2 { name="RadOnc"; version="1.1.8"; sha256="0nc8f2f2yvfvx81xm87zr08asisyar9zdx3fwqz0lvz5xgrwkp3x"; depends=[oro_dicom ptinpoly]; }; RadialVisGadgets = derive2 { name="RadialVisGadgets"; version="0.2.0"; sha256="18a2c89jpdaln9cl5y4w161121fld08wm57m40qacsj1vlnkh6j9"; depends=[caret dplyr ggplot2 miniUI r_import rlang shiny shinyjs shinyscreenshot tidyr]; }; @@ -4179,7 +4193,6 @@ in with self; { RandMeta = derive2 { name="RandMeta"; version="0.1.0"; sha256="0bh3rkdfmwqym47q8f90pw3mmx7q8jyp4rz16ggqrmk1b5bdyqjb"; depends=[]; }; RandPro = derive2 { name="RandPro"; version="0.2.2"; sha256="092mm9gybvcby2n161nldlq8s2ja2bc43jnkln6ss3lr29rmi9b3"; depends=[caret e1071]; }; RandVar = derive2 { name="RandVar"; version="1.2.1"; sha256="17c6bx644n604zpggmwx1z3krgd9v7c88il45cf5yhp7zf7cc718"; depends=[distr distrEx startupmsg]; }; - RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="1.2.5"; sha256="0bjfz3bla6pr7wq4mqqcd4gmxqdx32gci4f71arfski31yx8ihlc"; depends=[]; }; RandomForestsGLS = derive2 { name="RandomForestsGLS"; version="0.1.4"; sha256="1viq8vv4f0l0ywcr9s1n1vk23a917yj35lgvrpac9rf0vvk70an7"; depends=[BRISC matrixStats pbapply randomForest]; }; Randomuseragent = derive2 { name="Randomuseragent"; version="0.0.1"; sha256="1ym272z5a2wnprz59db8knszzqglmrdmk77r7cfyzy5jwcqzy4jn"; depends=[]; }; RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.4"; sha256="01j3gww9kil02d44jwlkz6j7lwn2him830bnshkly0s7mgh22pgr"; depends=[jpeg shiny tidyverse]; }; @@ -4187,7 +4200,7 @@ in with self; { RankAggreg = derive2 { name="RankAggreg"; version="0.6.6"; sha256="1g70njfv776qgp3i52kr6yxg7x9qliqaj33jm5vkgbajw1ampsdx"; depends=[gtools]; }; RankAggregator = derive2 { name="RankAggregator"; version="0.0.1"; sha256="0j4s4fv28fbc6ij6fzpmza9n5lfrql8ll33fi65vhczz9pjhpjii"; depends=[]; }; RankResponse = derive2 { name="RankResponse"; version="4.0.0"; sha256="1i686wgqz8pxdjsgyqr9i8fq1779h3jpzzrmh407pknawyii1vmy"; depends=[]; }; - Rankcluster = derive2 { name="Rankcluster"; version="0.94.5"; sha256="1ddfcmiqy20s7sfjbxax0rvc9vb1ckr46icy1zsa103hhbp5pjqb"; depends=[Rcpp RcppEigen]; }; + Rankcluster = derive2 { name="Rankcluster"; version="0.98.0"; sha256="0lipl57xx6ik66579vmhammy86iwjlnc7qmkjn9xcj3prkqy5p2i"; depends=[Rcpp RcppEigen]; }; RankingProject = derive2 { name="RankingProject"; version="0.4.0"; sha256="11i47arl3r32iky29wjawb26g0hiji0ddl70gcrcy8v9j0h01vap"; depends=[]; }; RapidPolygonLookup = derive2 { name="RapidPolygonLookup"; version="0.1.1"; sha256="0h4snn3haa4a5rkafg98419by4nnz219wsm3y0dqgm4hw4bvha0g"; depends=[PBSmapping RANN RgoogleMaps sp]; }; RapidoPGS = derive2 { name="RapidoPGS"; version="2.2.0"; sha256="0p19jc7cn2s8nnc0nblbl7k42srgm1risxggzb2rd1ngr93z757p"; depends=[bigreadr bigsnpr coloc curl data_table dplyr GenomicRanges IRanges RCurl]; }; @@ -4199,9 +4212,9 @@ in with self; { Rata = derive2 { name="Rata"; version="0.0.2"; sha256="1s7am08691lil5hbd8jpa5wnbvr0qqf0gkxczpm6yvizbjpx16qx"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2 Rirt]; }; RatingScaleReduction = derive2 { name="RatingScaleReduction"; version="1.4"; sha256="1d37l4xgg1iba2rbhp4c5i7igrcy0zgbdvzk3yc0wj2x1mm5dayk"; depends=[ggplot2 pROC]; }; RationalExp = derive2 { name="RationalExp"; version="0.2.2"; sha256="0a51sfps3sfb71m93jdsmbvj6kafbyfrq790ix238j570f5xafpg"; depends=[snowfall]; }; - Ravages = derive2 { name="Ravages"; version="1.1.0"; sha256="0fabwbrkgj48m0hgq2s2c3ah7r7xbbbkz4svrkfb2jpaw2dq8vhk"; depends=[bedr BH curl data_table dfidx Formula gaston mlogit Rcpp RcppEigen RcppParallel]; }; + Ravages = derive2 { name="Ravages"; version="1.1.1"; sha256="1lkdw9ilkrsa6zc7s3ljjnjzjwhxfy0w9p6jlqmrj9j81kydyxbz"; depends=[bedr BH curl data_table dfidx Formula gaston mlogit Rcpp RcppEigen RcppParallel]; }; RavenR = derive2 { name="RavenR"; version="2.2.0"; sha256="17m6q6v3s3maj3wlic9id4bll4n3waa34sj8580l1kd5knhybmil"; depends=[colorspace cowplot crayon DiagrammeR dplyr dygraphs gdata ggplot2 igraph lubridate magrittr purrr Rcpp RCurl scales stringr tidyr visNetwork xts zoo]; }; - RawHummus = derive2 { name="RawHummus"; version="0.2.2"; sha256="04lj7dxfz7hhcwlwbigra2sgf1aafmx88169mdsw381m9c29xaj2"; depends=[data_table dplyr kableExtra markdown plotly purrr RaMS RColorBrewer rmarkdown shiny shinycustomloader shinydashboard shinydashboardPlus shinyFiles shinyMatrix shinyvalidate]; }; + RawHummus = derive2 { name="RawHummus"; version="0.2.3"; sha256="0g20qlv9vij6cw8b3smg26i0qxh83w9z4gvnpp9h0sc2qg4incr1"; depends=[data_table dplyr kableExtra markdown plotly purrr RaMS RColorBrewer rmarkdown shiny shinycustomloader shinydashboard shinydashboardPlus shinyFiles shinyMatrix shinyvalidate]; }; Rbeast = derive2 { name="Rbeast"; version="0.9.5"; sha256="0b0arw8db731lpym28v98gc28ka4c94b50blh3zps84ydbd3ql4w"; depends=[]; }; Rbent = derive2 { name="Rbent"; version="0.1.0"; sha256="0xkb57dhhfd3342rv0xwbhbhn4zp5fbfch84fbh0sickm09l9vrj"; depends=[Rfit]; }; Rbgs = derive2 { name="Rbgs"; version="0.2"; sha256="1q0dnbcpgx7x9klr6z33z6g2p9p8mrmhnsqjy6qw15ch720rrgn3"; depends=[imager magrittr rJava]; }; @@ -4226,8 +4239,9 @@ in with self; { RcmdrPlugin_DCCV = derive2 { name="RcmdrPlugin.DCCV"; version="0.1-1"; sha256="1snlzffs9f300iyxsbarykc53pfa8h9qsk354xki7n0wz5jp1lc3"; depends=[DCchoice Rcmdr]; }; RcmdrPlugin_DCE = derive2 { name="RcmdrPlugin.DCE"; version="0.1-2"; sha256="04c6xig7a8rbwy1cwahxxk5x5vzdijrq0dl2hr8dlivpyv2pjq73"; depends=[Rcmdr support_CEs survival]; }; RcmdrPlugin_DoE = derive2 { name="RcmdrPlugin.DoE"; version="0.12-4"; sha256="0iwl2g1xjr30xdgpy7wiw5c6j0amag57ia5qvcpgxwj3pnyxa2lx"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc]; }; + RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-3"; sha256="0v7pw0m8cxpnkdm47b8jb3z94p1igi98s4r8i0gm7x7ad4fzccww"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; }; RcmdrPlugin_EBM = derive2 { name="RcmdrPlugin.EBM"; version="1.0-10"; sha256="02zips1jbfn7cshjlrm1gr632px2zxlys8i0f1nrf1gifl44v1qw"; depends=[abind epiR Rcmdr]; }; - RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.60"; sha256="1wamdlhd2zi5ykd5f32is4n4nwn26h6dldvxnnd5k340wvd30bhn"; depends=[Rcmdr readstata13]; }; + RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.61"; sha256="1d97lans5w14scfn4z0nxpgfdlmspbzq2c6vl02pf5z3rrqfnbrq"; depends=[Rcmdr readstata13]; }; RcmdrPlugin_EcoVirtual = derive2 { name="RcmdrPlugin.EcoVirtual"; version="1.0"; sha256="0q879wnrmgbaddv883q9zdnp0i7kjcgn8cffv7lp8nrsqil6l7mc"; depends=[EcoVirtual Rcmdr]; }; RcmdrPlugin_Export = derive2 { name="RcmdrPlugin.Export"; version="0.3-1"; sha256="17fn3si6b6h20c52k1k6fv9mslw3f9v0x1kxixzcvq54scdx0sk0"; depends=[Hmisc Rcmdr xtable]; }; RcmdrPlugin_FactoMineR = derive2 { name="RcmdrPlugin.FactoMineR"; version="1.7"; sha256="1145rpzhq219sl0j2bg5xa0ihq13lmr7ahcn3db4a8mqlz2fp8zy"; depends=[FactoMineR Rcmdr]; }; @@ -4262,15 +4276,15 @@ in with self; { RcppAPT = derive2 { name="RcppAPT"; version="0.0.9"; sha256="03q2i1b9lrb0sn0vq4jyqjiy2zwi2ydhzlnw1b8nj9xdfxx804mx"; depends=[Rcpp]; }; RcppAlgos = derive2 { name="RcppAlgos"; version="2.6.0"; sha256="11dvh0ba3chsqf3vw8g9h1754arxgwqryayavx3n6vm5daz2krqa"; depends=[cpp11 gmp]; }; RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.20"; sha256="11fgxbx3w36937h22v9pqx0nk5vpxp3hybj7k1b0lk8mj7hcginw"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.11.4.0.1"; sha256="1qrpdalcvn9bkhiq4l2jflicy6116l5j913h8clyf8yaygsxvr0c"; depends=[Rcpp]; }; - RcppBDT = derive2 { name="RcppBDT"; version="0.2.5"; sha256="1yx6rlidcz5yygzk1kvc5b5vclvdkv96v1y3nghj1523nnapbyxy"; depends=[BH Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.11.4.2.1"; sha256="172vz9j1hck6iwk56hgsrg91n4f11df1n6hy1crbv3cb53rkyjgn"; depends=[Rcpp]; }; + RcppBDT = derive2 { name="RcppBDT"; version="0.2.6"; sha256="11l70rlayg2xzmg34sg3896adzpfpvplciyicjpk963bddjb2ys8"; depends=[BH Rcpp]; }; RcppBigIntAlgos = derive2 { name="RcppBigIntAlgos"; version="1.0.1"; sha256="157a14kqcf0q3z01mn4w1194k2l39dd4qmqs0i115p8bvkjc6ncd"; depends=[gmp Rcpp RcppThread]; }; - RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.11"; sha256="0vpz34ri1p41kcdzm3ymxz2zg2lqighrfy5adsbamhrz941n99jw"; depends=[Rcpp]; }; + RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.12"; sha256="1jr4hi3zbm935q6ykkvnywlma36d3jl7fxmqhxs62jxbnyyqf81a"; depends=[Rcpp]; }; RcppCGAL = derive2 { name="RcppCGAL"; version="5.4.1"; sha256="1ymnamvnhbx0nbqrlrk8f57py3ccdhirydn1ilvsn6yf1z9bs3sm"; depends=[Rcpp]; }; RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.11"; sha256="0m9g37hrx33mmxhhzi6qakgiqh6w0c2s624fkgbny9vcabr3dfsx"; depends=[Rcpp]; }; RcppCWB = derive2 { name="RcppCWB"; version="0.5.4"; sha256="0myyasiglgm1zmka3gz7vq08hqz5ag2y21ri4a0ck026dxdi6jmc"; depends=[fs Rcpp]; }; RcppCensSpatial = derive2 { name="RcppCensSpatial"; version="0.3.0"; sha256="0ghywbg2zrhd72y3hf99niqlw04gvfzfa02pa581lvvd67z19gjp"; depends=[ggplot2 gridExtra MomTrunc mvtnorm Rcpp RcppArmadillo RcppProgress Rdpack relliptical roptim StempCens]; }; - RcppClassic = derive2 { name="RcppClassic"; version="0.9.12"; sha256="0v9v34i1c4dkplavdl14kz1k2rnk4hsaiyv6rkc9403z9isvzzr0"; depends=[Rcpp]; }; + RcppClassic = derive2 { name="RcppClassic"; version="0.9.13"; sha256="18kn9r7h5qqf6a6f28rjynrvp0yg0v82hxyv9z6cg254qnzd3bvj"; depends=[Rcpp]; }; RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.2"; sha256="0dr2104miy7psr73nicfs84652ai0d5liw6wxcwyrx7fmys3p638"; depends=[Rcpp RcppClassic]; }; RcppClock = derive2 { name="RcppClock"; version="1.1"; sha256="0h59s6f9ib6d2n1fi94bcbqw0gcpbd5zvnc3pk4kb9lm7ih4dw7b"; depends=[ggplot2 Rcpp]; }; RcppColors = derive2 { name="RcppColors"; version="0.1.1"; sha256="10lylgdbiqnvz4r60xb71sk3lxmrvk5nclm4wnwqyz7gbja3xs9g"; depends=[Rcpp]; }; @@ -4279,13 +4293,13 @@ in with self; { RcppDate = derive2 { name="RcppDate"; version="0.0.3"; sha256="1nwb4fdjxwn0c1ckj1fpsxl2hxk5z3sk3y5giwgdag6nfv7yfplw"; depends=[]; }; RcppDist = derive2 { name="RcppDist"; version="0.1.1"; sha256="02g57xwfipdcljv06krhm02dbqn9kfyj2km6rdg0a7vq9prwdz1x"; depends=[Rcpp RcppArmadillo]; }; RcppDynProg = derive2 { name="RcppDynProg"; version="0.2.0"; sha256="10nc0sx3n83kg8rddbajifr9q8iyjmm59z5xcpqfmmfi345i26al"; depends=[Rcpp RcppArmadillo wrapr]; }; - RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.9.2"; sha256="14ylrq7mmylmi513zkwyqqy43kqbz95fc6fzpagqvyx6snaffir5"; depends=[Matrix Rcpp]; }; + RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.9.3"; sha256="0xhwgn77166ir7qnzl25mj0byskkqr0b36hihrpr2zaqsrzs8wsq"; depends=[Matrix Rcpp]; }; RcppEigenAD = derive2 { name="RcppEigenAD"; version="1.0.0"; sha256="18zm9hsfqwiicxsdm87ix3qc261ljxxn2s736p6aayx82b6vwkz6"; depends=[BH functional memoise Rcpp RcppEigen Rdpack readr]; }; RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.19.0.1"; sha256="0cc67nx8iddi70m8s2b683k4zcfakqw90rxm8wmaa2g3vpjbvadl"; depends=[Rcpp RcppArmadillo]; }; RcppExamples = derive2 { name="RcppExamples"; version="0.1.9"; sha256="0568zipgjxgmx086mlfpp5n7v8kf50gwrylvhl1bgvzb2vvr9dhj"; depends=[Rcpp]; }; RcppFarmHash = derive2 { name="RcppFarmHash"; version="0.0.2"; sha256="0nkismq7hmp1ahwv4z438zrcj7mqsfmas2yd6av6k2cmkgklqkbk"; depends=[Rcpp]; }; RcppFastFloat = derive2 { name="RcppFastFloat"; version="0.0.3"; sha256="1926hz4q6qqvz8zpabgvk04a18cm1xaqcf30yjgcrslgaf8l8h0n"; depends=[Rcpp]; }; - RcppGSL = derive2 { name="RcppGSL"; version="0.3.11"; sha256="1a5dms0axlzgpv1z2bhfrb77497h0ch1yslq0gidj14vr4kfm57h"; depends=[Rcpp]; }; + RcppGSL = derive2 { name="RcppGSL"; version="0.3.12"; sha256="1qmrwd0zc0kwbhpwxg5s5fxp0pmfh0hwcli8vqh1q41997yyy14m"; depends=[Rcpp]; }; RcppGetconf = derive2 { name="RcppGetconf"; version="0.0.3"; sha256="1qcnn482h9b8aw798frnkza4bzzpihp0pf4s1mj6zmn2ar01hsl0"; depends=[Rcpp]; }; RcppGreedySetCover = derive2 { name="RcppGreedySetCover"; version="0.1.0"; sha256="1v84i9gsmvpkmgd4niqnzp58nhrgn2j4rggsrnlh391ikdfrl51x"; depends=[BH data_table Rcpp]; }; RcppHMM = derive2 { name="RcppHMM"; version="1.2.2"; sha256="0scdzmns1yw2gbarblzd6cbvndlysz54ff17qijiz17ql5cyzly6"; depends=[Rcpp RcppArmadillo]; }; @@ -4299,11 +4313,11 @@ in with self; { RcppParallel = derive2 { name="RcppParallel"; version="5.1.5"; sha256="1sn211ajlb1p12sglxqns175rg078yvww268m8cp0vvd7cmk55k3"; depends=[]; }; RcppProgress = derive2 { name="RcppProgress"; version="0.4.2"; sha256="0j2b37gwjpgmrnr00srdzm751hzlpsjb54ph63xxmcdfnwhlnqmi"; depends=[]; }; RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.1.1"; sha256="06ahzp0rvk3wrrj46dmszkmpnybaa5hrpbs2cs5h3jn633k67zj6"; depends=[BH Rcpp]; }; - RcppRedis = derive2 { name="RcppRedis"; version="0.2.1"; sha256="1pcfdg499vakn5rn3jald2hhrzhzsggwg95zm2293ma3pihrjvqa"; depends=[RApiSerialize Rcpp]; }; + RcppRedis = derive2 { name="RcppRedis"; version="0.2.2"; sha256="1xlmw410bli99wjlh6kv5q1nz886vapma23mzrh083fizw3adzfk"; depends=[RApiSerialize Rcpp]; }; RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.2.6"; sha256="1svpzx4h9baipqnx2793vkjh1lnr92y82whpryqzzm4i7b6zx27i"; depends=[Rcpp RcppArmadillo]; }; RcppSimdJson = derive2 { name="RcppSimdJson"; version="0.1.8"; sha256="1fzawv385d2dbplg84s9qxcjjh29q6wfdslfaarlcz1y6m34vnq5"; depends=[Rcpp]; }; - RcppSpdlog = derive2 { name="RcppSpdlog"; version="0.0.8"; sha256="1z5fg1i9splph4nfxnra07yjgss9g6g5rcsz492aa0zd8xi7z3za"; depends=[Rcpp]; }; + RcppSpdlog = derive2 { name="RcppSpdlog"; version="0.0.10"; sha256="19931fgjmzrp65vci3s8gypipg761ajalnn75pdi1x8a2bgz1jhf"; depends=[Rcpp]; }; RcppStreams = derive2 { name="RcppStreams"; version="0.1.3"; sha256="06il7q3afaws57m0fxf04f2p5dvs23l1f7gl78pxwzclacdy3839"; depends=[BH Rcpp]; }; RcppTN = derive2 { name="RcppTN"; version="0.2-2"; sha256="0m2wc5n1fzxv56s4gqqnygb24dbadgrpgjm4bs4hr6qazgjapymf"; depends=[Rcpp]; }; RcppTOML = derive2 { name="RcppTOML"; version="0.1.7"; sha256="0h8517ipwqhqkhcfiyqmvsb585g01p0ra0azbpzyxip6pq6g029g"; depends=[Rcpp]; }; @@ -4311,7 +4325,7 @@ in with self; { RcppUUID = derive2 { name="RcppUUID"; version="1.1.1"; sha256="0sxdj5ay90i1bs3wizij31n21ym8l0q0c79959arp1gd303sd8b8"; depends=[BH Rcpp]; }; RcppXPtrUtils = derive2 { name="RcppXPtrUtils"; version="0.1.2"; sha256="0hm57nf4dzgsmg4hjj6wikwjx93fgfwkmybw6ly4b58wi6qwml1l"; depends=[Rcpp]; }; RcppXsimd = derive2 { name="RcppXsimd"; version="7.1.6"; sha256="1iwiz4964dw015cbxcanks8xkjan39hfzf8x6bhvf6dqqwkc4bh7"; depends=[Rcpp]; }; - RcppXts = derive2 { name="RcppXts"; version="0.0.5"; sha256="1vzq6z5m48cpkbcx2fw7r102jdjfc776d5q3b7yxqsv07r6y2lav"; depends=[Rcpp xts]; }; + RcppXts = derive2 { name="RcppXts"; version="0.0.6"; sha256="1ljwscw8ykyqadjc98r9p6z4qjjfm79n9l618pmhh842l68kag28"; depends=[Rcpp xts]; }; RcppZiggurat = derive2 { name="RcppZiggurat"; version="0.1.6"; sha256="0wgd1v2p7zajnbrjf3hfi56p3pk3ld6iwkanbb04bjbnlif2ay4w"; depends=[Rcpp RcppGSL]; }; Rcrawler = derive2 { name="Rcrawler"; version="0.1.9-1"; sha256="1m6b1h72h8qjqcg3lzw6im6lpnkxhjg65g9fdjjqay6vy52ynznj"; depends=[callr data_table doParallel foreach httr jsonlite selectr webdriver xml2]; }; Rcriticor = derive2 { name="Rcriticor"; version="2.0"; sha256="1cnmmcdp2g3syrlld1pm7101cbzxh02cpvqvgsj7mp6zxm2k5plv"; depends=[]; }; @@ -4322,7 +4336,7 @@ in with self; { Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.14"; sha256="1d45dn1vxx5vq53m8as4fyq7077s1vw9xxq5r7f4fajybpqiby18"; depends=[formatR roxygen2 xfun]; }; Rdiagnosislist = derive2 { name="Rdiagnosislist"; version="1.0"; sha256="0f7dikc23z7gyhi29dg2l4l1q178d16nad98xvmdbygah8k1b377"; depends=[bit64 data_table]; }; Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; - Rdimtools = derive2 { name="Rdimtools"; version="1.1.0"; sha256="12xj079n0khl17yq4mhkxql1afpva797iz5c2z3m7giv7cflc513"; depends=[CVXR maotai MASS mclustcomp RANN Rcpp RcppArmadillo RcppDE RcppDist Rcsdp Rdpack RSpectra]; }; + Rdimtools = derive2 { name="Rdimtools"; version="1.1.1"; sha256="0mih0ad04ipk9mmcp7i78v7zsdi6np4sl1x1z4gg1s5ww8ci02sk"; depends=[ADMM CVXR maotai MASS mclustcomp RANN Rcpp RcppArmadillo RcppDE RcppDist Rdpack RSpectra]; }; Rdpack = derive2 { name="Rdpack"; version="2.4"; sha256="109mylzmlncq5a09ayy4g2g0frj1k843lj8j78gvmz1h5g8sslkn"; depends=[rbibutils]; }; Rdroolsjars = derive2 { name="Rdroolsjars"; version="1.0.1"; sha256="1l9bc1bwpj10irr973hzkhr04i1f3g998n8hcl2k2i9kgv1naqmz"; depends=[rJava]; }; Rdrw = derive2 { name="Rdrw"; version="1.0.2"; sha256="1487r8z6h1y0v6fxkp7qfbh7j96hw8gqbb0fc90m4cxwz0hrqrn2"; depends=[mvtnorm]; }; @@ -4340,8 +4354,8 @@ in with self; { RecAssoRules = derive2 { name="RecAssoRules"; version="1.0"; sha256="0jvl9yl1rg69bqb1cimi8r0bry73jhsq73fxfyy33ljwym2cdgv6"; depends=[Rcpp]; }; Recocrop = derive2 { name="Recocrop"; version="0.4-1"; sha256="1drh1qssnb42p1zl45phpggxhx6is435k9f1vzga0q0dddr5q770"; depends=[meteor Rcpp terra]; }; Recon = derive2 { name="Recon"; version="0.3.0.0"; sha256="11gag2bl00pcy7ysfycaa58qarh6aigznldkc4kkn2178bl4ii62"; depends=[rootSolve]; }; - RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-12.3"; sha256="11nlmg1hcf4nv69ampc4mdq2lz27mq9yn4q7c0k45g0ilydb0pg3"; depends=[ada data_table DBI e1071 evd ff ipred nnet rpart RSQLite xtable]; }; - RecordTest = derive2 { name="RecordTest"; version="2.1.0"; sha256="0a5hbhqx97kllwf5k6lrhcqixhqqj8ndklcvpmsp9jdf011b1100"; depends=[ggplot2]; }; + RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-12.4"; sha256="0jfissk9gcf1w78dhly01dpjlb8nyk32iz1s2n38ggk8ywd4zgbk"; depends=[ada data_table DBI e1071 evd ff ipred nnet rpart RSQLite xtable]; }; + RecordTest = derive2 { name="RecordTest"; version="2.1.1"; sha256="01l16i0i58nsaa2vpfywmqa6srgym4vzybrgbgcv8cpf31w8ly7w"; depends=[ggplot2]; }; Records = derive2 { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; RedditExtractoR = derive2 { name="RedditExtractoR"; version="3.0.6"; sha256="18apw0qjzk4lc02bx8kfi7hqxyb23zz2r7zw93dgf04aa8q49x2i"; depends=[RJSONIO rlang]; }; RedisBaseContainer = derive2 { name="RedisBaseContainer"; version="1.0.1"; sha256="0pnjj3rbp2as7h92907g338bd173ygl1zfnlfw6c9wpzfvw909rr"; depends=[DockerParallel]; }; @@ -4356,10 +4370,9 @@ in with self; { Relatedness = derive2 { name="Relatedness"; version="2.0"; sha256="1aidklwk8q2wdfsmhlbd3vzq9kzsyh4wn1g28biyb6lq7iwq1hl4"; depends=[]; }; Relectoral = derive2 { name="Relectoral"; version="0.1.0"; sha256="0kpdafdvpcs6iicpc10i634nlk7dqk2nymdnnlkpp5frdxlbycvx"; depends=[dplyr ggforce ggplot2 readxl rmarkdown sf xlsx]; }; RelimpPCR = derive2 { name="RelimpPCR"; version="0.2.4"; sha256="0svfyh313wawzqx9hfb4cg0wn2ir6nd769z1k3dckdsb8d7xkh3q"; depends=[caret ggplot2 relaimpo reshape2 Rmisc]; }; - Renext = derive2 { name="Renext"; version="3.1-0"; sha256="074djs4y71667aylpgh514pzijr90rgpzm4w5ayq9cgaqz22m3am"; depends=[evd numDeriv]; }; + Renext = derive2 { name="Renext"; version="3.1-3"; sha256="0m5br76n0vd6q1kkjp6w7qxhvrplc63dxm5zcw6cy9f302x76jdk"; depends=[evd numDeriv]; }; RenvModule = derive2 { name="RenvModule"; version="1.1"; sha256="1wmz6k0f9lpa8d7qxqm308l7h11k0cj07q3qisfjic5sp308c3d2"; depends=[]; }; Renvlp = derive2 { name="Renvlp"; version="3.2"; sha256="1fmziz6s1i1vgk58pi5k5h37ys04ngrb8d1avpbvv9pgm557yll8"; depends=[orthogonalsplinebasis Rsolnp]; }; - ReorderCluster = derive2 { name="ReorderCluster"; version="2.0"; sha256="0zq143xvv2br7016f9b1501ymcpkjqm3al1dn5qfm21axyi2p1iq"; depends=[gplots gtools Rcpp]; }; RepaymentPlan = derive2 { name="RepaymentPlan"; version="0.1.0"; sha256="1fd4n24bd5s2kqmls7mmsidblaf8nzm97kz52mfsb6i6fci0pgah"; depends=[]; }; RepertoiR = derive2 { name="RepertoiR"; version="0.0.1"; sha256="1m7n7p40n3djy91z8z3gqqwscqgij63rjrj2bqbl3baqz16nf4hc"; depends=[circlize igraph reshape2 stringdist stringi stringr]; }; Replicate = derive2 { name="Replicate"; version="1.2.0"; sha256="0kqy248c8n7qr5hwzvqm7flnjlwd60c577r1d4vzgfxn7azd5v3v"; depends=[ggplot2 metafor]; }; @@ -4367,7 +4380,8 @@ in with self; { ReplicationSuccess = derive2 { name="ReplicationSuccess"; version="1.2"; sha256="0x470102sr819jgm1h5b228qcckghnfv8badgb53jy05ral7lrc2"; depends=[]; }; Repliscope = derive2 { name="Repliscope"; version="1.1.1"; sha256="04sxcnsd8vz5kbzqz52iqzwayrmkzc51bcwnfkp53wymiw4vppiz"; depends=[colourpicker ggplot2 shiny]; }; RepoGenerator = derive2 { name="RepoGenerator"; version="0.0.1"; sha256="0d6s2sqyycaqrg32xdkp3pr5i7qmvwrfrjcd7f94a9y3lz4bz5b5"; depends=[git2r httr rmarkdown rstudioapi]; }; - Require = derive2 { name="Require"; version="0.1.4"; sha256="132sawllsw4vnm5b836rmzzimqy9rralvkigi5jqiv07z37xlmqn"; depends=[data_table]; }; + Require = derive2 { name="Require"; version="0.2.5"; sha256="1crj73a22cap9www7fjvqzr3qb2mwx4cwmm02mpv9npqrvv9ybpp"; depends=[data_table]; }; + ResPBIBD = derive2 { name="ResPBIBD"; version="0.1.0"; sha256="00a3qbam4dc9lwfyqq63j8q9yppd4nr7pk0wbikjfw6rnbjsl1sh"; depends=[]; }; ResearchAssociate = derive2 { name="ResearchAssociate"; version="1.0.1"; sha256="00j339ngc72gn2gyn1irjmazrv6l5nbsy3z25r6j1zrjwsbay15p"; depends=[ggplot2 plyr rentrez XML]; }; ResidentialEnergyConsumption = derive2 { name="ResidentialEnergyConsumption"; version="1.1.0"; sha256="0m24x5mha58ihsd06jkcb3wi796v3gkjg78w8vah21p9gqdmqxw1"; depends=[]; }; ResistorArray = derive2 { name="ResistorArray"; version="1.0-32"; sha256="0zqnl0bbqrj5hn5ywhlqyrlz5ryql88qahlgs9989v4rljcxxlam"; depends=[]; }; @@ -4376,6 +4390,7 @@ in with self; { RestRserve = derive2 { name="RestRserve"; version="1.2.1"; sha256="1xfcp0y9l31815g1jk33mnkb6z68qpjl0gb4fj7f4578kx3v1c8p"; depends=[checkmate digest jsonlite mime R6 Rcpp Rserve uuid]; }; RestoreNet = derive2 { name="RestoreNet"; version="1.0"; sha256="015j8kw0msixjxljhpj4hnj67k9z89zcsyga0jva4ig5ri24rj34"; depends=[ggplot2 Matrix RColorBrewer scales scatterpie stringr xtable]; }; RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; + RevGadgets = derive2 { name="RevGadgets"; version="1.1.0"; sha256="1d14wf6zya1p9wrh1yvrl1gryldvnq7zvhi3b99002w9jph5zp25"; depends=[ape deeptime dplyr ggimage gginnards ggplot2 ggplotify ggpp ggthemes ggtree phytools png reshape scales tibble tidyr tidytree treeio]; }; ReviewR = derive2 { name="ReviewR"; version="2.3.8"; sha256="19cj92v7356n3910dx2z8xzi78fynd32kb9132ll2xw295mfk61i"; depends=[bigrquery config dashboardthemes DBI dbplyr dplyr DT gargle glue golem httr jsonlite magrittr purrr redcapAPI REDCapR rlang RPostgres RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyjs shinyWidgets snakecase stringr tibble tidyr]; }; Revticulate = derive2 { name="Revticulate"; version="1.0.0"; sha256="00pz8nnbl7dcbbqw8kdbdai1i3jc941l42nppaa1kxk6i3dci7gs"; depends=[ape comprehenr jsonlite knitr rstudioapi stringr usethis]; }; Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; @@ -4384,9 +4399,9 @@ in with self; { Rfast = derive2 { name="Rfast"; version="2.0.6"; sha256="0zxykq021h57mq0n6giqbx8ncjsdly0arhmaj3fcp3yfcxf4ns9l"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; Rfast2 = derive2 { name="Rfast2"; version="0.1.3"; sha256="1bqaazgna9vradgs8naqnyv5y1q4fq67hm18k22bcb5vycci3m5k"; depends=[RANN Rcpp RcppArmadillo Rfast]; }; Rfit = derive2 { name="Rfit"; version="0.24.2"; sha256="1b3pza2xdpifvrcqbdp5r2wy82ws1844bnpna01hqj65xbw2iix8"; depends=[]; }; - Rfmtool = derive2 { name="Rfmtool"; version="4.1.8"; sha256="1p4b9wgcdvlhfcf1rq15wcx2qjn2hgqp6gv7wx40dziqa8csrlpk"; depends=[]; }; + Rfmtool = derive2 { name="Rfmtool"; version="4.1.9"; sha256="1rkzczif7v8dqmivyfc4wblymf482ddjllabzz14bswv7mfnly5k"; depends=[]; }; Rfolding = derive2 { name="Rfolding"; version="1.0"; sha256="15lf73zxr1slin9faj9k0z8qkb1g9nb7h080nfv99gsi2ks68ssg"; depends=[]; }; - Rforestry = derive2 { name="Rforestry"; version="0.9.0.116"; sha256="0px9w40d5qd5br1ypbdfdwmhfj9mxdn915ijg077bs3h52fv00z0"; depends=[dplyr glmnet onehot Rcpp RcppArmadillo RcppThread visNetwork]; }; + Rforestry = derive2 { name="Rforestry"; version="0.9.0.144"; sha256="1hgrphvjkl9794fmbpismh30z4gw5lfcx8vh2f1cljp4wg7h94ca"; depends=[dplyr glmnet onehot Rcpp RcppArmadillo RcppThread visNetwork]; }; Rfractran = derive2 { name="Rfractran"; version="1.0"; sha256="0cwc069f7rhkxkr5kn0n43mdy8m47gh0q6d5ijwzkhncrijb10cy"; depends=[gmp]; }; Rfssa = derive2 { name="Rfssa"; version="2.1.0"; sha256="0ww4s5vhqhdw9rr8maqgzwx6kvj196z339maxd3xx29qxgp6j1ml"; depends=[dplyr fda ggplot2 httr lattice markdown plotly Rcpp RcppArmadillo RcppEigen RSpectra Rssa shiny tibble]; }; Rga4gh = derive2 { name="Rga4gh"; version="0.1.1"; sha256="0h5y722blkkwn6ask6vjnhl22v9l6511chdm50ig6xcs5dvjam2m"; depends=[httr jsonlite]; }; @@ -4399,6 +4414,7 @@ in with self; { RiemBase = derive2 { name="RiemBase"; version="0.2.5"; sha256="1ikv7n8hp23a5dbmnfypdkx74vxwjd9br0hvysnhhpg1ffvr5vhi"; depends=[pracma Rcpp RcppArmadillo Rdpack]; }; Riemann = derive2 { name="Riemann"; version="0.1.4"; sha256="1a3mlfgnzdvl5x1nqnmm4v3xb2nkdq87c21m6xyxbm7zh5vx5b6m"; depends=[CVXR DEoptim lpSolve maotai Matrix Rcpp RcppArmadillo Rdimtools Rdpack RiemBase T4cluster]; }; Riex = derive2 { name="Riex"; version="1.0.2"; sha256="03627dik6dd9d2kwv757zanh0i4invmcwg162m9ayhv41ygj5z1l"; depends=[dplyr ggplot2 httr purrr quantmod rjson stringr tibble tidyr TTR urltools xts zoo]; }; + Rigma = derive2 { name="Rigma"; version="0.2.1"; sha256="0h0fblnsbrkkvd0cimywa3gq4q7ay9p39f7x2rpis58kj28ra6fn"; depends=[bslib checkmate dplyr fs glue httr2 lubridate magrittr png purrr rlang tibble tidyr withr xml2]; }; Rilostat = derive2 { name="Rilostat"; version="1.1.8"; sha256="02fmz4jla151w6bz0zg766q4d34kz1jf43156yr2f90zj8x4jjx4"; depends=[data_table dplyr DT haven plyr RCurl readr stringr tibble tidyr xml2]; }; Rip46 = derive2 { name="Rip46"; version="1.0.2"; sha256="0wfp6fm5mgmjqjkn0c5hvjd95yn4zcv0s8xc5294qf5jqxp8b1w7"; depends=[Rcpp]; }; Rirt = derive2 { name="Rirt"; version="0.0.2"; sha256="0npd2g3a4dh5hlj6l06k1pf0j4731ybqqd4mpi4id16nf81cg104"; depends=[ggplot2 Rcpp reshape2]; }; @@ -4412,7 +4428,6 @@ in with self; { RkMetrics = derive2 { name="RkMetrics"; version="1.3"; sha256="1k6vnr1r4h69iznib638z45gd0f8wc4g4h0ji9f0017883g77li1"; depends=[]; }; Rlab = derive2 { name="Rlab"; version="4.0"; sha256="019rmciqza5rd5z9hvh8xk20c2rjhzyzp1k5731qm1d3jz5lwx5k"; depends=[]; }; Rlabkey = derive2 { name="Rlabkey"; version="2.9.0"; sha256="0337vdwbhxk463a0hbi3xvdnzl6wb4jcqvwzfl5qw5200j66v6cc"; depends=[httr jsonlite Rcpp]; }; - Rlda = derive2 { name="Rlda"; version="0.2.6"; sha256="0i8n01h9072q339p1kiqhcpwphw0d2x6bsszbhgfqc2b160dk2bl"; depends=[coda doParallel foreach gtools Rcpp RcppArmadillo RcppProgress]; }; Rlgt = derive2 { name="Rlgt"; version="0.1-4"; sha256="11nhgzdf37345m5k153pfrdsqbg6gpp4g8xig19pcf4sbmqq2k5l"; depends=[BH forecast Rcpp RcppEigen RcppParallel rstan rstantools sn StanHeaders]; }; Rlibeemd = derive2 { name="Rlibeemd"; version="1.4.2"; sha256="0hzsnrz30429pavf7qghknykah9ks4msb96zwa1xgvqb4zd512dg"; depends=[Rcpp]; }; Rlinkedin = derive2 { name="Rlinkedin"; version="0.2"; sha256="15sbiis1d0s466nqk1adjhflb01sb9kn25f4y6sagkdggvyz6b56"; depends=[httpuv httr XML]; }; @@ -4436,7 +4451,7 @@ in with self; { RoBMA = derive2 { name="RoBMA"; version="2.3.1"; sha256="0cj360bbhcsljhz0zm1ivmqwh37g83mrcv2yvrvnfffaarziflj9"; depends=[BayesTools bridgesampling coda extraDistr ggplot2 mvtnorm psych Rdpack rjags runjags scales]; }; RoBSA = derive2 { name="RoBSA"; version="1.0.0"; sha256="0r6qsjsb646s4li78nz94xkgmpbdndl71j6ra74fd6bx1gkysxqw"; depends=[BayesTools bridgesampling coda Rdpack rjags runjags scales survival]; }; RoBTT = derive2 { name="RoBTT"; version="1.0.0"; sha256="146pvhl214kbhhxqay85789n5mwrn2hk47s8jwh8r04c6jcdlsi7"; depends=[BayesTools BH bridgesampling Rcpp RcppEigen RcppParallel Rdpack rstan rstantools StanHeaders]; }; - RobAStBase = derive2 { name="RobAStBase"; version="1.2.2"; sha256="18rk8rry7y17kk262308hf6nsvr7syzyqx0n0sjhqcc82j2bamxl"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; + RobAStBase = derive2 { name="RobAStBase"; version="1.2.3"; sha256="02gapmpwkqy0n65nfaa9rvpx6693j9h93hfhn6s41q7833gvcx3z"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; RobAStRDA = derive2 { name="RobAStRDA"; version="1.2.0"; sha256="1s84j5in4av9zbbszv8j2rpigrd9ws9h4hz64jw7xagsj3xb49kz"; depends=[]; }; RobExtremes = derive2 { name="RobExtremes"; version="1.2.0"; sha256="150p94f0g75g54qcaq4x45lk4sxiyvv1zs4hxkicf46raybvsv89"; depends=[actuar distr distrEx distrMod evd RandVar RobAStBase RobAStRDA robustbase ROptEst startupmsg]; }; RobGARCHBoot = derive2 { name="RobGARCHBoot"; version="1.2.0"; sha256="142r6cmzwhg4xfbpbgrvngncm2wczly2arg6p8612ypjsk4yinrf"; depends=[doParallel doRNG foreach Rcpp RcppArmadillo]; }; @@ -4449,7 +4464,7 @@ in with self; { RobStatTM = derive2 { name="RobStatTM"; version="1.0.5"; sha256="192acs7fwkw760d58s0byd5zk3j0gysa158wa2ygfkifzwbagc89"; depends=[pyinit robustbase rrcov]; }; RobinHood = derive2 { name="RobinHood"; version="1.6.5"; sha256="0j54dhb6bss9dkkphfs18mmnk7n0qmxzykch1ivqqr4m8gbq3x8r"; depends=[dplyr httr jsonlite lubridate magrittr profvis uuid]; }; RobustAFT = derive2 { name="RobustAFT"; version="1.4-5"; sha256="1i119qqlavfj7k0srb8fbbyy2nhsjv9rgrni854liizr9m51cgac"; depends=[robustbase survival]; }; - RobustANOVA = derive2 { name="RobustANOVA"; version="0.1.0"; sha256="1qxmrf115iyzfafd52m3sy87hbhga5byrwq83l13bxwairvfy0ar"; depends=[optimbase PEIP]; }; + RobustANOVA = derive2 { name="RobustANOVA"; version="0.3.0"; sha256="1kpvahxipcmsqk6mv2zagcvw0glmsj0xkpf6f3gjnckin6mxnjyv"; depends=[optimbase PEIP]; }; RobustBF = derive2 { name="RobustBF"; version="0.2.0"; sha256="137lsk72sx29lhkc1s698k015vvbmdzb23i8pnlk5204bjfqzch8"; depends=[]; }; RobustBayesianCopas = derive2 { name="RobustBayesianCopas"; version="2.0"; sha256="0cbibfp4y45cc1disp2r37v0jln0cd9gy3d77z3k9ybj1gg8wa88"; depends=[rjags statip]; }; RobustCalibration = derive2 { name="RobustCalibration"; version="0.5.3"; sha256="1fz0lhgj70zfh5mlcfswxz168hpir68pdz7lszz21ixr73hjdhxb"; depends=[nloptr Rcpp RcppEigen RobustGaSP]; }; @@ -4462,7 +4477,7 @@ in with self; { Rogue = derive2 { name="Rogue"; version="2.1.3"; sha256="00phrxhsszp98wa9wxbx51z2zrrwpdwamym1k19493ppn7vz22ix"; depends=[ape cli fastmatch matrixStats Rdpack Rfast TreeDist TreeTools]; }; RolWinMulCor = derive2 { name="RolWinMulCor"; version="1.2.0"; sha256="0vfsgp0qvv6pnpai8nyy0xzzlzyjwx98xrhlwlks9dbm84wg8vqr"; depends=[colorspace gtools pracma scales zoo]; }; RonFHIR = derive2 { name="RonFHIR"; version="0.4.0"; sha256="1ajpgpp300m0zzqzzwsn8sfy8x751hrr8py9n9xvzjmkgyrh4hhw"; depends=[httr jsonlite R6 stringr]; }; - Rook = derive2 { name="Rook"; version="1.1-1"; sha256="00s9a0kr9rwxvlq433daxjk4ji8m0w60hjdprf502msw9kxfrx00"; depends=[brew]; }; + Rook = derive2 { name="Rook"; version="1.2"; sha256="0qjziszrrwsp1mbykps3yf5r98q83cyd4jzpgi7gvbsd2ssy96n7"; depends=[brew]; }; RootsExtremaInflections = derive2 { name="RootsExtremaInflections"; version="1.2.1"; sha256="0qd6cmzp8fkb75ac79xbh4032vqwax7nk7d6yykpdbn0bnk2kvdi"; depends=[doParallel foreach inflection iterators]; }; Ropj = derive2 { name="Ropj"; version="0.3-2"; sha256="1c9d2paa5b2ym8qn608hyimr3fbns7nxrhk1bms87cgd8a7sqaf0"; depends=[Rcpp]; }; Rosenbrock = derive2 { name="Rosenbrock"; version="0.1.0"; sha256="0qfdyr66g244jvbnssbnj2b2ng740dr4qmillpnwl4h2hh811syv"; depends=[MASS]; }; @@ -4476,7 +4491,7 @@ in with self; { Rpoet = derive2 { name="Rpoet"; version="1.1.0"; sha256="11gp4zg0wc2a21956355rkr3i3dyaabfz0z30z4phn8s7y3yqr92"; depends=[]; }; Rpolyhedra = derive2 { name="Rpolyhedra"; version="0.5.4"; sha256="00wmxk8j89lyzbb7fws4g8znnqbw5dh64vqhxjg5rxjdpr3vibl8"; depends=[digest geometry git2r lgr R6 rgl stringr XML]; }; Rpoppler = derive2 { name="Rpoppler"; version="0.1-1"; sha256="1hx3c6iqkxfwppv9168d2wrgfsxi1zl29cbi684w7ndvchfly49v"; depends=[]; }; - RprobitB = derive2 { name="RprobitB"; version="1.1.1"; sha256="1f5bnzqj58m07lp17fckwc9h55ngv5l3da54xzrvyzasvjk79031"; depends=[crayon doSNOW foreach ggplot2 gridExtra MASS mixtools mvtnorm plotROC progress Rcpp RcppArmadillo rlang viridis]; }; + RprobitB = derive2 { name="RprobitB"; version="1.1.2"; sha256="1acxgxv4v7id7smrg9f8dfxx9y17pvqwsbfg0n8zdd99q724bpx5"; depends=[cli crayon doSNOW foreach ggplot2 gridExtra MASS mixtools mvtnorm plotROC progress Rcpp RcppArmadillo rlang viridis]; }; Rprofet = derive2 { name="Rprofet"; version="2.2.1"; sha256="150123vxdd31p96f3vsri46ryfng2xvnjgm6mdiqczg48xyfpbdp"; depends=[binr ClustOfVar ggplot2 gridExtra plyr sqldf stringr]; }; Rquake = derive2 { name="Rquake"; version="2.4-4"; sha256="1929qxqbb6s316zb9x2q1kwz2pvwpvqr1w6iw8vm5vijyf1nvv30"; depends=[GEOmap MBA minpack_lm RPMG RSEIS]; }; Rquefts = derive2 { name="Rquefts"; version="1.2-1"; sha256="1v548wys8fd6xqz4hfvqkckl6szjf6zr383n1x0kc6f2pfrc6jnf"; depends=[meteor Rcpp]; }; @@ -4484,10 +4499,11 @@ in with self; { Rraven = derive2 { name="Rraven"; version="1.0.13"; sha256="0nlqr1hzbzbz4rb3hjy01iw8czhaqvwmy9hh728fgl5vajwqwn8g"; depends=[NatureSounds pbapply seewave tuneR warbleR]; }; Rrdap = derive2 { name="Rrdap"; version="1.0.6"; sha256="0lwp80622xnjgfljds0fs64l3c30ijmz495v48j564za4ss4yx9q"; depends=[curl rjson stringr]; }; Rrdrand = derive2 { name="Rrdrand"; version="0.1-16"; sha256="0j9yyvq8r1cgwj3kw1ak6hyazr67f2q0c1m651wdm0wcvm1ajx7f"; depends=[]; }; + RsSimulx = derive2 { name="RsSimulx"; version="2.0.2"; sha256="04z71idb9jhm7cmgm3vwr6y9wlji2q82gd3f73sy0n9sg0cl60dj"; depends=[ggplot2 gridExtra]; }; Rsagacmd = derive2 { name="Rsagacmd"; version="0.2.0"; sha256="1z92fk7j2n6zzplfc3xlhnaynn2i2cp6cq6hw621fmnf09ccq005"; depends=[foreign generics processx raster rgdal rlang rvest sf stars stringr terra tibble]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rsconctdply = derive2 { name="Rsconctdply"; version="0.1.3"; sha256="12xc1laxgivv4szp8341pvhmxnzzzzc2s4jhnqsqrbx71lbd9szg"; depends=[dplyr rjson rsconnect]; }; - Rserve = derive2 { name="Rserve"; version="1.8-10"; sha256="0b2x6kqrc23xah6bg7c6ncmq8wkj4z898r2qjwjyinsq965a4qxg"; depends=[]; }; + Rserve = derive2 { name="Rserve"; version="1.8-11"; sha256="118vmylh14avsq4ckx0933hk8j200jkbz88j5rfyx31z95l1vywx"; depends=[]; }; Rsfar = derive2 { name="Rsfar"; version="0.0.1"; sha256="1xskvvvavkdyjhb99qlii9qc0q1m36mxx6g0ybgwbq26lq4ypq7l"; depends=[fda]; }; Rsgf = derive2 { name="Rsgf"; version="1.0.0"; sha256="1d2bk20ixnfkzbimvsj56arf7brgkwlyrs80snfn5cnvmwic0h8i"; depends=[ggplot2 png stringi stringr]; }; RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; }; @@ -4496,7 +4512,7 @@ in with self; { Rsomoclu = derive2 { name="Rsomoclu"; version="1.7.6"; sha256="1jbi4nib0a749k7vkqzhdb5l2jipxq9k8vi5x7i06qns8sb3ajil"; depends=[kohonen Rcpp]; }; Rspc = derive2 { name="Rspc"; version="1.2.2"; sha256="1cnzqpnh009wfs51dc4id9q3giaa8b6dc75b1lhzpwcvw0cxcy4y"; depends=[]; }; Rspotify = derive2 { name="Rspotify"; version="0.1.2"; sha256="1q8ajjx5ghlgxgch9gifvhi2gmsi0ph8pygwrb9jrd3ijahlw5k4"; depends=[dplyr httr jsonlite magrittr plyr]; }; - RsqMed = derive2 { name="RsqMed"; version="0.1.7.1"; sha256="18r78svwbnri5283s5nxg4vrp29r6xx13h0n6w634jdpwaiw56gk"; depends=[GMMAT SIS]; }; + RsqMed = derive2 { name="RsqMed"; version="0.2.1.0"; sha256="0answ66a9gi38lw48xjvb0f2cpifxi9c5iwlghwh26baffqp9m64"; depends=[GMMAT SIS]; }; Rssa = derive2 { name="Rssa"; version="1.0.5"; sha256="0bajpvrj7cfch7v83dl2swa62kd59xk0lavjcx20lczvd9iijn27"; depends=[forecast lattice svd]; }; Rstg = derive2 { name="Rstg"; version="0.0.1"; sha256="1rghac9sjld03rw1sbq2r7rs2fzf3a2xikjb47cfdnk1r73ziysf"; depends=[reticulate]; }; RstoxData = derive2 { name="RstoxData"; version="1.2.1"; sha256="0xfznv0nl7xymlxbd7g0lbxqw1zcyc9mm4mx0nwpw896vz7dvyvw"; depends=[data_table Rcpp stringi units xml2 xslt]; }; @@ -4513,9 +4529,8 @@ in with self; { Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.11"; sha256="1fbls9hy4s0hdszg449bpapx2mhknwiasvr15djf9f1hm0b2908p"; depends=[]; }; Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; }; Runuran = derive2 { name="Runuran"; version="0.37"; sha256="18gvv8kih58dw1xz57xnz86mhd0mpn311m1mkjqhcj0z4gkjiwwh"; depends=[]; }; - Rvcg = derive2 { name="Rvcg"; version="0.21"; sha256="13b3l72ii7ndzmglf48xz1lm7kkpsca2q6148ihgbrpnv9n0w5r1"; depends=[Rcpp RcppArmadillo RcppEigen]; }; + Rvcg = derive2 { name="Rvcg"; version="0.22"; sha256="1c9s0wp4n5bz32s5h9h18sxk69fri7ikl8yx490inb6znwh7hkgc"; depends=[Rcpp RcppArmadillo RcppEigen]; }; Rvmmin = derive2 { name="Rvmmin"; version="2018-4.17.1"; sha256="0kl1h4mlvb1bngb40r3dhrjkpnh3lsqddis65hbjzm2pzz20l02m"; depends=[optextras]; }; - Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; }; Rwave = derive2 { name="Rwave"; version="2.6-5"; sha256="1r72kcc5f9k38ks39nh9x1y7k1kxrbyv7lywqpsy7wknnddzg7kc"; depends=[]; }; Rwclust = derive2 { name="Rwclust"; version="0.1.0"; sha256="0c7q2i9n22sqj3wq9m0j49y5h14848myjbixrdkic8lvv91dm438"; depends=[checkmate Matrix]; }; RweaveExtra = derive2 { name="RweaveExtra"; version="1.0-0"; sha256="1jg4dn2x8d74z0wy9j9azvb8f1g0449ji5yl6g964lv2g3fpq6qh"; depends=[]; }; @@ -4523,7 +4538,6 @@ in with self; { Rwofost = derive2 { name="Rwofost"; version="0.8-3"; sha256="1x6ia49xrdqcxilq12g47gd00smm5jdrq7xavndd3dcnvl1nqk1y"; depends=[meteor Rcpp]; }; Rwordseg = derive2 { name="Rwordseg"; version="0.3-2"; sha256="10jhfalh45rrcm76hwz4b5yl408ndx2wkr0i3q1avx6z6i45d8s6"; depends=[HMM tmcn]; }; Rwtss = derive2 { name="Rwtss"; version="0.9.2"; sha256="0lxjzznigk4i8lzga88m0i6x2j5c5q79rvs5knd762ycfxwlmx6w"; depends=[assertthat dplyr geosphere ggplot2 httr jsonlite lubridate magrittr purrr reshape2 stringr tibble zoo]; }; - RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-5"; sha256="01n74xnhz1fdvb63g0lxkzsdp1frspin4a764l358immjivdrx2v"; depends=[coda lattice MASS MCMCpack mvtnorm]; }; RxnSim = derive2 { name="RxnSim"; version="1.0.3"; sha256="0fi4aic2brfbl6rsnnfwqq7l8ygvlmr98w0v749l3djpgn7sfrig"; depends=[data_table fingerprint rcdk rJava]; }; Ryacas = derive2 { name="Ryacas"; version="1.1.3.1"; sha256="0c258p7ibas4xbq1wh8c1nfqf6r9d0hicrf8mkkyriw4mb6wmzqq"; depends=[magrittr Rcpp]; }; Ryacas0 = derive2 { name="Ryacas0"; version="0.4.3"; sha256="1qsj6hbydi923bvc8qy1k34nl73xf3fsmr5ww3dw9gzn1kzg2470"; depends=[Rcpp settings xml2]; }; @@ -4544,12 +4558,14 @@ in with self; { SAMM = derive2 { name="SAMM"; version="1.1.1"; sha256="175jk3s9w68ccw1h019380lp9cajfsy3zigcnplp87pcn3qg7x2i"; depends=[Rcpp RcppArmadillo]; }; SAMTx = derive2 { name="SAMTx"; version="0.3.0"; sha256="18r03w74fcra3c0xa76jnkkms9pjirdmgb2k1dnz7symqf9cvc5l"; depends=[BART]; }; SAMUR = derive2 { name="SAMUR"; version="1.1"; sha256="1ihxr455hxpk3mz113j7ai36lw9i4v60yd4x50j7npzcpq5r0mwk"; depends=[Matching]; }; - SAMtool = derive2 { name="SAMtool"; version="1.4.0"; sha256="09waiyiq4nvc5dx2dycb4xxb83k7k4z3yv3lx8cdh5d4lx9v6hj7"; depends=[corpcor dplyr gplots MSEtool RcppEigen rmarkdown snowfall TMB vars]; }; + SAMtool = derive2 { name="SAMtool"; version="1.4.1"; sha256="0628iahnik4k67lfk06h6g5bn47584mxi4pia0cyi79nzbw0782k"; depends=[corpcor dplyr gplots MSEtool RcppEigen rmarkdown snowfall TMB vars]; }; + SAP = derive2 { name="SAP"; version="1.0"; sha256="129szqkh4snlqn5q09yaqf6sd04nvai3a0ifk0b36yrqj92v6fd1"; depends=[BSDA]; }; SAPP = derive2 { name="SAPP"; version="1.0.8"; sha256="1lb148s8rdx1phmx8ihncgb45iqxzracxznys7zyzs8qcf6hm5wq"; depends=[]; }; SAR = derive2 { name="SAR"; version="1.0.3"; sha256="1cnf0hsq82lzssvz5xs2abvnrjxda0g6mjx70a1j223zdwjqmw64"; depends=[AzureRMR AzureStor dplyr httr jsonlite Matrix R6 Rcpp RcppArmadillo RcppParallel]; }; SARP_compo = derive2 { name="SARP.compo"; version="0.1.5"; sha256="17pvgc7alv59lxnrz1rj5gdl2lg90jxfwkyn8j802n22r3bmzcsm"; depends=[car igraph]; }; - SARP_moodle = derive2 { name="SARP.moodle"; version="0.8.7"; sha256="1yq1rvalibdja12461nivaifhdip3w0qzm0z99zcl0h13r6zl55r"; depends=[base64enc]; }; + SARP_moodle = derive2 { name="SARP.moodle"; version="0.9.1"; sha256="115zr99lwlrgy56xrls1x0wa64jm04xwr2a39kihy3wx8j49rb2n"; depends=[base64enc]; }; SAScii = derive2 { name="SAScii"; version="1.0.1"; sha256="04cns0mvff7crbsv8vld3qwjrj280jzbx25m9d03l9wa4ba2djny"; depends=[]; }; + SASdates = derive2 { name="SASdates"; version="0.1.0"; sha256="1413x0biid7972zz2qqv22h26a738mp7n97gpxxs9rykxkw3bfr5"; depends=[]; }; SASmarkdown = derive2 { name="SASmarkdown"; version="0.8.0"; sha256="16bfad9rp0yi9pph2m3f7bkkaiv2q41gkw5ji15x3ngqibv0khyi"; depends=[knitr xfun]; }; SASmixed = derive2 { name="SASmixed"; version="1.0-4"; sha256="0491x4a3fwiy26whclrc19alcdxccn40ghpsgwjkn9sxi8vj5wvm"; depends=[]; }; SAVER = derive2 { name="SAVER"; version="1.1.2"; sha256="1s1kw8idkaj7j90fw4qn9k0wd4vz0sblsk06ry6lm4afcar0p158"; depends=[doParallel foreach glmnet iterators Matrix]; }; @@ -4558,7 +4574,6 @@ in with self; { SBICgraph = derive2 { name="SBICgraph"; version="1.0.0"; sha256="04c9xb9fdxz62qdsfkdkckvfpccrc7n5j3j5v1lgjywxq6l78wsm"; depends=[glmnet MASS network]; }; SBMSplitMerge = derive2 { name="SBMSplitMerge"; version="1.1.1"; sha256="1h44qwz9gkwwgkac25h4vn0kq3mjvjsyq99yfd8v8g6g8fkkclaq"; depends=[ggplot2 reshape2 scales]; }; SBN = derive2 { name="SBN"; version="1.0.0"; sha256="1k4x8hzjrzvaxnq9z9rykc65lfp4x75nhjrfpk6llq9hqjms2n06"; depends=[igraph]; }; - SBRect = derive2 { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; }; SBSDiff = derive2 { name="SBSDiff"; version="0.1.0"; sha256="0mw1646dmhxw6zz4pq7j0g3mf9bjn72g43sq7m72r8ma8ciqj7r2"; depends=[]; }; SBdecomp = derive2 { name="SBdecomp"; version="1.2"; sha256="0p3f028c674j6bl82sgmbwlim2hljxm38qiff78pzn5yx34y3r0b"; depends=[survey twang]; }; SBmedian = derive2 { name="SBmedian"; version="0.1.1"; sha256="1pxwsp6z1qvhmzprhr8f8i1id5zy4ppq7dxbd6ny2h1r1zvy16xm"; depends=[expm Rcpp RcppArmadillo Rdpack]; }; @@ -4589,7 +4604,7 @@ in with self; { SCRT = derive2 { name="SCRT"; version="1.3.1"; sha256="0wkxc22hv08riivjl09lhxvffqxxdy4xnvdmc2y69gssyinkbln1"; depends=[]; }; SCVA = derive2 { name="SCVA"; version="1.3.1"; sha256="1gdicpnbr8bdgrbwwslpwpzw2adpp94p8nhsrkdx0bjlpfhd4g9h"; depends=[ggExtra ggplot2 plotly scales]; }; SCperf = derive2 { name="SCperf"; version="1.1.1"; sha256="1kqi3sv9ds58l20pdcnjrrbf7fin82j73yqj5rbx4kjdw560ylb2"; depends=[]; }; - SCpubr = derive2 { name="SCpubr"; version="1.0.2"; sha256="0zkp7has7y571kq1bf840mrgwwqi0ks2ka94gax3m8z205w5z3ns"; depends=[]; }; + SCpubr = derive2 { name="SCpubr"; version="1.0.4"; sha256="10np0w5zqmqjg6k8cnipclh8pqrw81187q0zlicm42w4q4dyvgzn"; depends=[]; }; SCtools = derive2 { name="SCtools"; version="0.3.2.1"; sha256="0pw0kpqv4hzskfigl7ch509jj2cmp674l9ms2ivbx3sxq9l0hhj1"; depends=[cvTools dplyr furrr future ggplot2 magrittr purrr stringr Synth]; }; SDAR = derive2 { name="SDAR"; version="0.9-55"; sha256="1a1dy4wpzhfaqxv4x8knazh4kjx042rnkmvxf62r6wkgbfvq4r6b"; depends=[grImport2 linbin readxl]; }; SDAResources = derive2 { name="SDAResources"; version="0.1.1"; sha256="13zb8sx7913wpj1jhi5sb0ps8fgzxfvjx75p218n166w54rxjqjs"; depends=[]; }; @@ -4598,6 +4613,7 @@ in with self; { SDLfilter = derive2 { name="SDLfilter"; version="2.3.0"; sha256="1187mcn41l7qqxq130qk5cyh7dcv69b5n07hjcilkpaz5rl6wl2w"; depends=[data_table dplyr emmeans geosphere ggmap ggplot2 ggsn gridExtra lubridate maps plotKML pracma sf stars]; }; SDMPlay = derive2 { name="SDMPlay"; version="2.0"; sha256="1qdvpa57p4p3949rjmvvvz41a3hm3jb34dnn8s2pi04rzrjkys0f"; depends=[dismo raster]; }; SDMtune = derive2 { name="SDMtune"; version="1.1.6"; sha256="13q3yy6jj6b42k2bgwv40m06kpl5hpc9f4ysvdh6p3x80qxq3cgh"; depends=[dismo gbm ggplot2 jsonlite maxnet nnet progress randomForest raster Rcpp rlang rstudioapi stringr whisker]; }; + SDPDmod = derive2 { name="SDPDmod"; version="0.0.1"; sha256="17wyymjip84dxpncz6kqg32wlwn5qgw7x54djg301wqmvpjyl2y8"; depends=[Matrix plm RSpectra sf sp spdep]; }; SDPrism2D = derive2 { name="SDPrism2D"; version="0.1.1"; sha256="1f1k6lk0fh9dz11703fpbmvjl2gyq4y7l4khigl1h69j9xv97yf3"; depends=[]; }; SDT = derive2 { name="SDT"; version="1.0.0"; sha256="1jwpfd1pnzy9wcl90qv5bgwi19shsw9064dvml9zwbif8yw8dzjj"; depends=[quadprog]; }; SDaA = derive2 { name="SDaA"; version="0.1-5"; sha256="1gs29jaj46i2bhbnpa0s6bhdrylz1s6wnif5cyc5m7xl19s413gb"; depends=[]; }; @@ -4624,7 +4640,7 @@ in with self; { SGPdata = derive2 { name="SGPdata"; version="26.0-0.0"; sha256="1l0d9l25nzmiwmwh0b3cm7c854h56ir0qmb70mi8jawnirmilpp2"; depends=[crayon data_table]; }; SHAPforxgboost = derive2 { name="SHAPforxgboost"; version="0.1.1"; sha256="106nsf02b1w3yshb55lwnyw1rl1a60162v2wk8znjz3b4ln3mqj5"; depends=[BBmisc data_table ggExtra ggforce ggplot2 ggpubr RColorBrewer xgboost]; }; SHELF = derive2 { name="SHELF"; version="1.8.0"; sha256="05kr2y5wqbpw3ajf5pbhhfyqv7n3zw3kb7ba2j24sr62jlin3avv"; depends=[ggExtra ggplot2 ggridges gridExtra Hmisc MASS rmarkdown scales shiny shinyMatrix tidyr]; }; - SHT = derive2 { name="SHT"; version="0.1.7"; sha256="0dj6z07qagk9wjp50b9w078zcvdss99cj0xalykwl63l1l96w6cw"; depends=[flare pracma Rcpp RcppArmadillo Rdpack]; }; + SHT = derive2 { name="SHT"; version="0.1.8"; sha256="03mzjm0hx1i8jz7gam19zyr5w6whwk7a3gfid68h5hj8x60p04wx"; depends=[flare pracma Rcpp RcppArmadillo Rdpack]; }; SI = derive2 { name="SI"; version="0.2.0"; sha256="0i6kpaw5yk39skm77nf56ai25clkparz3l8qx0223jrmdqbf97b7"; depends=[]; }; SIBER = derive2 { name="SIBER"; version="2.1.6"; sha256="1ymr1y2c984nnjkj5nwc1mi4ixdwg8d191nn58i0dvckzm922z80"; depends=[dplyr ggplot2 hdrcde magrittr mnormt purrr rjags spatstat spatstat_geom spatstat_utils tidyr]; }; SIBERG = derive2 { name="SIBERG"; version="2.0.3"; sha256="1d8kx5m86qil50d8fhwn7lwaigdnppzk0cwyh4hv54lwffpclnki"; depends=[mclust]; }; @@ -4634,6 +4650,7 @@ in with self; { SILGGM = derive2 { name="SILGGM"; version="1.0.0"; sha256="1lhmisgg2zbfksl7czz0fqag3732gkjc44n615ipxbdi2pvnc7m0"; depends=[glasso MASS Rcpp reshape]; }; SILM = derive2 { name="SILM"; version="1.0.0"; sha256="1iaivpdx18djfm5dqak0q9kfl1xfrnx3gk5x9a4y53h1d7jhl9p6"; depends=[glmnet hdi scalreg SIS]; }; SIMEXBoost = derive2 { name="SIMEXBoost"; version="0.1.0"; sha256="0gxw8xb2hvsizawfd863c268q5wq1cdsmdsand5iys2b9gry1pmq"; depends=[MASS]; }; + SIMICO = derive2 { name="SIMICO"; version="0.2.0"; sha256="0inyiv2ccz6amdwy94liln0lfs9f12nwq6l0wcqvj42idyjas4ky"; depends=[bindata CompQuadForm fastGHQuad ICSKAT]; }; SIMMS = derive2 { name="SIMMS"; version="1.3.2"; sha256="1pdbgqndnhgyfcwgr5ijnnmn64cwlalwbanb2grkm7h80bpql3lw"; depends=[doParallel foreach glmnet MASS randomForestSRC survival]; }; SIMPLE_REGRESSION = derive2 { name="SIMPLE.REGRESSION"; version="0.1.5"; sha256="01bqakis3piwdpm04h9k7p9qyzfaxw9lf6r70rja1kv8w4aprlxm"; depends=[nlme]; }; SIPDIBGE = derive2 { name="SIPDIBGE"; version="0.1.7"; sha256="0n937v4m5a39waqqks640bvmnclzg4r2x4v36nr985xw153m9pj9"; depends=[cli COVIDIBGE PNADcIBGE png PNSIBGE purrr rstudioapi tibble]; }; @@ -4676,7 +4693,7 @@ in with self; { SMVar = derive2 { name="SMVar"; version="1.3.4"; sha256="1mh15iggzbd7ip15pkwzmiy8p712cvvns5pgdyw1pvkcvbvkxsma"; depends=[]; }; SNFtool = derive2 { name="SNFtool"; version="2.3.1"; sha256="05hz230aq5wbzhknxzr4iqv3nqjhbpf66n6bp1rc5h2jgz2yfbwq"; depends=[alluvial ExPosition]; }; SNPannotator = derive2 { name="SNPannotator"; version="0.2.5.0"; sha256="1fkiv1xifkwcsh26dca6jr6plqxwbnmlbs9amimdn3hljkzmlxbf"; depends=[data_table doParallel foreach ggplot2 httr jsonlite kableExtra openxlsx progress rmarkdown xml2]; }; - SNPassoc = derive2 { name="SNPassoc"; version="2.0-17"; sha256="12pzkrxd6hi76x160xkgbg7csqp2jw5yvj9sz0079zry7n03kqlc"; depends=[BiocStyle Biostrings GenomicRanges ggplot2 haplo_stats IRanges mvtnorm org_Hs_eg_db plyr poisbinom S4Vectors survival tidyr TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + SNPassoc = derive2 { name="SNPassoc"; version="2.0-18"; sha256="0karxsv4ilxscm51sj9yhm17xfnxvh3bkxvsmmvsypf4mpa1ks0a"; depends=[Biostrings ggplot2 haplo_stats mvtnorm plyr poisbinom survival tidyr]; }; SNPfiltR = derive2 { name="SNPfiltR"; version="1.0.0"; sha256="03a6ym4pc39yb2ijyw957aisksz7m8lrpjbrnyqzndxyvdn5pgbi"; depends=[adegenet cluster ggplot2 ggridges gridExtra Rtsne vcfR]; }; SNPknock = derive2 { name="SNPknock"; version="0.8.2"; sha256="121pdgvdffj61hw8x8m76na0cg5iw5gb586q05ikw5d959mmbzrs"; depends=[Rcpp RcppArmadillo RcppProgress Rdpack]; }; SNSchart = derive2 { name="SNSchart"; version="1.4.0"; sha256="18rpg2zkqa6bxnbq3s0hlsg4wizz6iw3vckf5z66q3awxqycabg9"; depends=[MASS]; }; @@ -4719,7 +4736,7 @@ in with self; { SPREDA = derive2 { name="SPREDA"; version="1.1"; sha256="0fn4p5apjq8zgd3zms2b88ga5wbsv86y59ac5x06w75rf071xglv"; depends=[nlme survival]; }; SPSL = derive2 { name="SPSL"; version="0.1-9"; sha256="0kf6mmbvavid3dw2l4fkclk669wi13wkyykhwn5272d6qnhlhhca"; depends=[]; }; SPSP = derive2 { name="SPSP"; version="0.1.1"; sha256="0bzlgjijwp5y6lk9hjqc2p8b1i6mp8jd7j7gsl47whc3lavr1nn8"; depends=[glmnet lars Rcpp]; }; - SPUTNIK = derive2 { name="SPUTNIK"; version="1.4"; sha256="1sspsvll7b03z2ag2iixydcbbjr2glg1n6k7m1lapq4ra77arh7i"; depends=[doSNOW e1071 edgeR foreach ggplot2 imager infotheo irlba reshape spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_sparse spatstat_utils testthat viridis]; }; + SPUTNIK = derive2 { name="SPUTNIK"; version="1.4.1"; sha256="0446qh43q09l7kvcgsp4gkp7p9v9448xx0xwngxgghnnmwh8fa4p"; depends=[doSNOW e1071 edgeR foreach ggplot2 imager infotheo irlba reshape spatstat_explore spatstat_geom viridis]; }; SPYvsSPY = derive2 { name="SPYvsSPY"; version="0.1.1"; sha256="1hxc73wwrzqh1r1xr9yd4hy4ma24virg4iv978lfyc9f9n56znp5"; depends=[]; }; SPlit = derive2 { name="SPlit"; version="1.2"; sha256="0n9458sj5sw4k9qd11gvmqmjf9hy1hh0bwx1jzm6r901l1wbp7xi"; depends=[Rcpp RcppArmadillo]; }; SPmlficmcm = derive2 { name="SPmlficmcm"; version="1.4"; sha256="1acs3560a7h6xx286m40abr9b7i5qihn6wni8flj0biahmsszzx6"; depends=[nleqslv]; }; @@ -4729,9 +4746,9 @@ in with self; { SQUAREM = derive2 { name="SQUAREM"; version="2021.1"; sha256="0n1s32l9p4vdm3h5q6g43s0qbpzry08difsh0yay80wrla6f3rb6"; depends=[]; }; SRCS = derive2 { name="SRCS"; version="1.1"; sha256="13zf3cqs53w68f9zc1fkb9ql84rvzn7g1hbykqrbvss8hjaq8x1r"; depends=[]; }; SRS = derive2 { name="SRS"; version="0.2.3"; sha256="0nx1sj91xkwplcmflq9c21zndaa4m21m9iqax86v947k070q48ql"; depends=[DT shiny shinybusy shinycssloaders vegan]; }; - SRTsim = derive2 { name="SRTsim"; version="0.99.2"; sha256="156vks38apxpx7v7qljmhn6lka2lmrd8p939d69ykrvmpi3cnqyw"; depends=[concaveman dashboardthemes ggplot2 ggpubr magrittr MASS Matrix matrixStats Morpho pdist plotly S4Vectors sf shiny shinyBS shinydashboard sp spatstat_geom spatstat_random viridis]; }; + SRTsim = derive2 { name="SRTsim"; version="0.99.3"; sha256="1l59x6gv6ya2s2wn7ccrn0jvb0hsc6f8wxvn3pwklz37467b94s6"; depends=[concaveman dashboardthemes ggplot2 ggpubr magrittr MASS Matrix matrixStats Morpho pdist plotly S4Vectors sf shiny shinyBS shinydashboard sp spatstat_geom spatstat_random viridis]; }; SRTtools = derive2 { name="SRTtools"; version="1.2.0"; sha256="1203i6nqclx0faxyvhdaapmfxy8h95jj83svxriqh1hpava5s1dy"; depends=[magrittr]; }; - SSBtools = derive2 { name="SSBtools"; version="1.3.4"; sha256="11hmabl79p67j5yn6wan4ahiqn84mbsw0k6zkasc5wkfscxl1p5d"; depends=[MASS Matrix stringr]; }; + SSBtools = derive2 { name="SSBtools"; version="1.3.8"; sha256="1vc15wcg8469vplxykzs3g5nb7a5nr2v8zdypj1gaghalv00iadf"; depends=[MASS Matrix stringr]; }; SSDM = derive2 { name="SSDM"; version="0.2.8"; sha256="19l78dkjk76ababkd7xsfn0fy99khfa4i502q4vllpvch4cjz51c"; depends=[dismo e1071 earth gbm ggplot2 mgcv nnet poibin randomForest raster reshape2 rpart scales shiny shinydashboard shinyFiles sp spThin]; }; SSDforR = derive2 { name="SSDforR"; version="1.5.28"; sha256="197rg6mar869wc83khzgdv28kpsc5b8gd0pqczvfcxzvqmwaiwgw"; depends=[Kendall MAd MASS metafor psych SingleCaseES TTR]; }; SSHAARP = derive2 { name="SSHAARP"; version="1.1.0"; sha256="0x8dinhhfk4q1cck7ms78f4k23430c4wyvlh2qclq0c83acjj4y9"; depends=[BIGDAWG data_table DescTools dplyr filesstrings gmt gtools stringr]; }; @@ -4739,7 +4756,7 @@ in with self; { SSLR = derive2 { name="SSLR"; version="0.9.3.3"; sha256="0fv1jqri3gpzcfs429pgx4hjqmjrglb4g7nfqdihd2hjmq9k4sql"; depends=[conclust dplyr foreach generics magrittr parsnip plyr proxy purrr RANN Rcpp RcppArmadillo rlang RSSL]; }; SSM = derive2 { name="SSM"; version="1.0.1"; sha256="1h8yyzh5rn5jay70kyzvwirfndi049a5w28qigrjv5rxd7ml84l7"; depends=[]; }; SSN = derive2 { name="SSN"; version="1.1.15"; sha256="057lh2ym82ff3c25vyh97csns4jwlbvxwc4jai0i4yplxf0ccmha"; depends=[BH igraph lattice maptools MASS Matrix rgdal rgeos RSQLite sp]; }; - SSNbayes = derive2 { name="SSNbayes"; version="0.0.1"; sha256="0kp7c4pynisqji6lfwnklsvjbwx44424qkyd4syhsn3rrr510ph5"; depends=[dplyr plyr rstan SSN]; }; + SSNbayes = derive2 { name="SSNbayes"; version="0.0.2"; sha256="0y5n9c9a6kd53ijai18arpsm09jp3v3f31zgg22y0pz6i3y24hm3"; depends=[dplyr plyr rstan SSN]; }; SSOSVM = derive2 { name="SSOSVM"; version="0.2.1"; sha256="11wlalpw6yhvv95xr8vvgxgl4jafc2ghzsk5wqyv71ahxarmrlss"; depends=[MASS mvtnorm Rcpp RcppArmadillo]; }; SSP = derive2 { name="SSP"; version="1.0.1"; sha256="0ccg81rsjki1fcqvj6lgmmmy5yw1gxy8khajl1i80qyi4v7ny9hk"; depends=[ggplot2 sampling vegan]; }; SSRA = derive2 { name="SSRA"; version="0.1-0"; sha256="1d0lg2dz8vf1d63366s5apm0ygrsfxivbrsij907r244zj6i1c37"; depends=[shape stringr]; }; @@ -4763,16 +4780,18 @@ in with self; { STMr = derive2 { name="STMr"; version="0.1.5"; sha256="1wz88y1fr2z7jwmni063j4rk1smbpbmgz6aw9cgfivz7gsps879n"; depends=[dplyr ggfittext ggplot2 magrittr nlme quantreg tidyr]; }; STOPES = derive2 { name="STOPES"; version="0.2"; sha256="0dlr9hasily74wlwb44qadql9qdii326xhdnam1anszsvijzs4dk"; depends=[changepoint cvTools glmnet MASS]; }; STPGA = derive2 { name="STPGA"; version="5.2.1"; sha256="0mwjv9r7x925ljmbwk2fl0xvf2n2hnf5n5z5p5rxr57ywvirqw1b"; depends=[AlgDesign emoa scales scatterplot3d]; }; + STREAK = derive2 { name="STREAK"; version="0.1.0"; sha256="0y6m7m2wpksymqnp4h1vangg70nz3qk1crd12g69smr02lg3amnk"; depends=[Ckmeans_1d_dp Matrix Seurat SPECK VAM]; }; STRMPS = derive2 { name="STRMPS"; version="0.5.8"; sha256="0vlmhrna0laqzjpbg4sgnscrli3cly2lc5d69n6iqfl213zsfz78"; depends=[Biostrings dplyr IRanges purrr ShortRead stringr tibble tidyr]; }; STV = derive2 { name="STV"; version="1.0.2"; sha256="02cd78z2k08gg5kskw1m53dc2xyl9f8qhcnhvy9n90ckakw6h19h"; depends=[]; }; STraTUS = derive2 { name="STraTUS"; version="1.1.2"; sha256="0n3i7gbycp1f10058h9xlh3yk21w2izdb3xgs793mmh1i1sjy394"; depends=[ape ggplot2 ggtree gmp igraph phangorn RcppAlgos]; }; SUMMER = derive2 { name="SUMMER"; version="1.3.0"; sha256="082ziawqkqgq18ghy46fgk7l5d1k9ls135qbzqkmb4xwiy1v2avm"; depends=[data_table ggplot2 ggridges Matrix RColorBrewer reshape2 scales shadowtext sp spdep survey survival viridis]; }; SUNGEO = derive2 { name="SUNGEO"; version="0.2.292"; sha256="1xav5by7sl21cwfg9m1ij1lz1kvdlqkkp2ah67rnj9vp4vk7nkfg"; depends=[automap cartogram data_table dplyr fasterize httr jsonlite measurements packcircles purrr RANN raster Rcpp RCurl rlang rmapshaper sf sp spdep]; }; - SVDNF = derive2 { name="SVDNF"; version="0.1.0"; sha256="13cangmx4srinrm42vc9qy24qghs2m8zb7lf0p3mc412z9n0r4px"; depends=[Rcpp]; }; + SUSY = derive2 { name="SUSY"; version="0.1.0"; sha256="0l0mxvas80d9n3vv9bqxw2dk8q1ikwg616hraprcs70aabh7717w"; depends=[]; }; + SVDNF = derive2 { name="SVDNF"; version="0.1.1"; sha256="1di3x4yx5hv0lzy7mydaq927qyl69dybqd6mh99h9scyxdilvjyd"; depends=[Rcpp]; }; SVMMaj = derive2 { name="SVMMaj"; version="0.2.9.1"; sha256="08f9sndcjgmmxl3zlbq86d8z0dbciv0ab1v9zx80svka7ckfv9z3"; depends=[dplyr ggplot2 gridExtra kernlab reshape2 scales]; }; SVN = derive2 { name="SVN"; version="1.0.1"; sha256="0n93lqb1f2s2qvzc8lrcqmr0fhd57xqbi0ymrqqmll31ns679m92"; depends=[data_table igraph memoise]; }; SWIM = derive2 { name="SWIM"; version="1.0.0"; sha256="1pfrwxn4rha7a68b82lq18x6acyhjy9d8nn2hdwd9hhf576vkvhg"; depends=[ggplot2 Hmisc nleqslv plyr Rdpack reshape2]; }; - SWMPr = derive2 { name="SWMPr"; version="2.4.1"; sha256="1dqhsqigfbfj167mp2h0wfybaymj9zlywh5d3syrrmpr694f9kz5"; depends=[data_table dplyr ggplot2 gridExtra httr lattice maptools oce openair RColorBrewer reshape2 tictoc tidyr XML zoo]; }; + SWMPr = derive2 { name="SWMPr"; version="2.4.2"; sha256="0lllfc5ixhhpx17fmm6rziphikc3r4k3i8cr8gjwghg9j94rc5mp"; depends=[data_table dplyr ggplot2 gridExtra httr lattice maptools oce openair RColorBrewer reshape2 tictoc tidyr XML zoo]; }; SWMPrExtension = derive2 { name="SWMPrExtension"; version="2.2.3"; sha256="1ig5wvf1h89v65xh1p69ab57flmlafjc02kgkcq3nfvm904ida4i"; depends=[broom dplyr EnvStats flextable ggimage ggplot2 ggthemes lubridate magrittr officer purrr RColorBrewer rlang scales sf SWMPr tidyr tidyselect]; }; SWTools = derive2 { name="SWTools"; version="0.2.4"; sha256="1azhmsb00mndqza0cb0nslyyc1c2d9lc1y6p19ibisizqdr04sqx"; depends=[dplyr forcats ggmap ggplot2 httr hydroTSM jsonlite lubridate magrittr readr reshape2 rlang rmarkdown segmented sf sp stringr tibble tidyr zoo]; }; SYNCSA = derive2 { name="SYNCSA"; version="1.3.4"; sha256="0n9za302x638s666xs86zy94qch9wn0rln8xy6x9jymhhq9zn0kj"; depends=[FD permute RcppArmadillo vegan]; }; @@ -4781,7 +4800,7 @@ in with self; { SampleSize4ClinicalTrials = derive2 { name="SampleSize4ClinicalTrials"; version="0.2.3"; sha256="0s8svsgwh79rcwnskz0my2xqasyp370hn7aixqm9m6zqlvf42zc2"; depends=[]; }; SamplerCompare = derive2 { name="SamplerCompare"; version="1.3.2"; sha256="09j06ycr749dbr6xbn5pxw7rp1p3cri40z38hf1kp5kvjxkkpy2w"; depends=[mvtnorm]; }; SamplingBigData = derive2 { name="SamplingBigData"; version="1.0.0"; sha256="0khrh7vfqqzpfp16x0ic5ml854wr2fj28cx95s6c0pz91hzlxkns"; depends=[]; }; - SamplingStrata = derive2 { name="SamplingStrata"; version="1.5-3"; sha256="0lqzj91qx52icvcswhv81y9ck78gcjycnj0z36mgks6zs9zfpiyv"; depends=[doParallel glue memoise pbapply SamplingBigData]; }; + SamplingStrata = derive2 { name="SamplingStrata"; version="1.5-4"; sha256="093x9rfilxhgf75p0rfsvglz0sg3imhdm15azxnjiblamyxbhfjm"; depends=[doParallel glue memoise pbapply SamplingBigData]; }; SanFranBeachWater = derive2 { name="SanFranBeachWater"; version="0.1.0"; sha256="18w2q3hzcrbmagnjyrn1ikwiyjh723mjb2vy0d8p1a6za0460p9w"; depends=[dplyr lubridate magrittr readr rvest tibble xml2]; }; SangerTools = derive2 { name="SangerTools"; version="1.0.2"; sha256="0ijxfa1h3mx86jk1s27qp7l4sz2d7i7llkwjvgnih9zjk0ybrdzw"; depends=[DBI dplyr ggplot2 ggtext ggthemes janitor magrittr odbc readr readxl rlang scales tibble]; }; ScaleSpikeSlab = derive2 { name="ScaleSpikeSlab"; version="1.0"; sha256="11n3pi15x77by0ikiawhnvlky6hp6qzwmsmp4l2hjng1469y7gg6"; depends=[Rcpp RcppEigen TruncatedNormal]; }; @@ -4809,8 +4828,7 @@ in with self; { Sejong = derive2 { name="Sejong"; version="0.01"; sha256="1d9gw42dbs74w7xi8r9bs6dhl23y16yxqzyhqqayvcm98q3l77nf"; depends=[]; }; SeleMix = derive2 { name="SeleMix"; version="1.0.2"; sha256="03q5pdgxdfx944zwpl2w7gzf23va4flbd8in3g03980smq0ai2c1"; depends=[mvtnorm]; }; Select = derive2 { name="Select"; version="1.4"; sha256="1qx4wwxxwjq31vf645xvwb0y2z5h4v6ca8fcrfpaj5kc33f333v2"; depends=[ade4 FD lattice latticeExtra Rsolnp]; }; - SelectBoost = derive2 { name="SelectBoost"; version="2.2.0"; sha256="1j525phl1b2b0f4b08az8p74mcgcnmv261d0sqrii8p44474zsy4"; depends=[abind Cascade glmnet igraph lars msgps Rfast spls varbvs]; }; - SelvarMix = derive2 { name="SelvarMix"; version="1.2.1"; sha256="02d16ffw5syq0d3yiim9jgrjlz99n956zxp23idpsmq6lb2whq66"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; }; + SelectBoost = derive2 { name="SelectBoost"; version="2.2.2"; sha256="189hdr50sikg6pr9x9amjmgg9z0c95j65bddmifsy7zvjhllzjiy"; depends=[abind Cascade glmnet igraph lars msgps Rfast spls varbvs]; }; SemNeT = derive2 { name="SemNeT"; version="1.4.3"; sha256="1qjjbx86sh2gk91bnx0rn3wszlf1w8wxyda5k2mqn4gzgpfplcsp"; depends=[broom car dplyr effects ggplot2 igraph magrittr pbapply philentropy plyr purrr qgraph RColorBrewer scales]; }; SemNetCleaner = derive2 { name="SemNetCleaner"; version="1.3.4"; sha256="1fll6i4bz2z07h23z5m3x8hqw5rkianh0w6v8gnnkjqlrnacpfp9"; depends=[easycsv editData foreign miniUI R_matlab readxl rstudioapi searcher SemNetDictionaries shiny stringdist stringi]; }; SemNetDictionaries = derive2 { name="SemNetDictionaries"; version="0.2.0"; sha256="1yhhva79hhj1imzw0n8wkyrb6pmxcqs7kq9czs392xzc6lqk9xr2"; depends=[easycsv knitr]; }; @@ -4839,8 +4857,8 @@ in with self; { SetMethods = derive2 { name="SetMethods"; version="3.0"; sha256="14hh1rb8bma0cx3v9dmn58mkv6sky7xcnhwxwij5x8hp93a1i9is"; depends=[admisc betareg fmsb ggplot2 ggrepel QCA scatterplot3d stargazer]; }; SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; }; SetTest = derive2 { name="SetTest"; version="0.2.0"; sha256="08wc6cbnannmwkncqhpcw6l0y7c1v7z3awk5j7fd853nszfmpbk0"; depends=[]; }; - Seurat = derive2 { name="Seurat"; version="4.2.0"; sha256="1vzb2k21nnzlky5dbf586wnixffz7wc9ncrpbgdw8md2kcmd58r2"; depends=[cluster cowplot fitdistrplus future future_apply ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lmtest MASS Matrix matrixStats miniUI patchwork pbapply plotly png RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppProgress reticulate rlang ROCR Rtsne scales scattermore sctransform SeuratObject shiny spatstat_core spatstat_geom tibble uwot]; }; - SeuratObject = derive2 { name="SeuratObject"; version="4.1.2"; sha256="03bd4fazcafaf5mp37cf9w6bxm9zwrlxkrqm9bjdnwxm07slanba"; depends=[future future_apply Matrix progressr Rcpp RcppEigen rgeos rlang sp]; }; + Seurat = derive2 { name="Seurat"; version="4.3.0"; sha256="0z7rzxi1gli56k50s6w1363ndw18wykgk5xmc3g7jhpphqxwpfky"; depends=[cluster cowplot fitdistrplus future future_apply ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lmtest MASS Matrix matrixStats miniUI patchwork pbapply plotly png progressr RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppProgress reticulate rlang ROCR Rtsne scales scattermore sctransform SeuratObject shiny spatstat_explore spatstat_geom tibble uwot]; }; + SeuratObject = derive2 { name="SeuratObject"; version="4.1.3"; sha256="1lw6v5mwq0sngjr33j99r5h42kaxlbq271a51xzkcnhnyra2fpaq"; depends=[future future_apply Matrix progressr Rcpp RcppEigen rlang sp]; }; ShapeChange = derive2 { name="ShapeChange"; version="1.4"; sha256="1ch7avx8mxjk8vrp17inaihmbsv968wflyk1n4fbjvacbl24vn2b"; depends=[coneproj quadprog]; }; ShapePattern = derive2 { name="ShapePattern"; version="2.2.0"; sha256="0x4a9qg5g44kdras8j7f0yyw44qfpizpmj657xgmbrwcai4ic1dh"; depends=[igraph landscapemetrics raster rgdal rgeos sp]; }; ShapeRotator = derive2 { name="ShapeRotator"; version="0.1.0"; sha256="1pg2m1wh7fbchm8gp3mngfnf5g2rbhvzim1bpzqyvxqpx6ynicsa"; depends=[plot3D]; }; @@ -4865,7 +4883,7 @@ in with self; { SigOptR = derive2 { name="SigOptR"; version="0.0.1"; sha256="1sylchhhz6kx4r8jx95cvsmjsacjh8pin7acf2fyw2a4nlx9r1a6"; depends=[httr jsonlite]; }; SigTree = derive2 { name="SigTree"; version="1.10.6"; sha256="18gh7azjr979ijc2y4yyskj24ay697rw3j7znc5p4a63s4vpxr9w"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; }; SightabilityModel = derive2 { name="SightabilityModel"; version="1.5.1"; sha256="1wb7w0pfahl3c8w8a8finlmrnvsickip17immriibanl3ppyrxzz"; depends=[formula_tools Matrix msm mvtnorm plyr survey]; }; - Signac = derive2 { name="Signac"; version="1.8.0"; sha256="01nxl6v6zr14m4n6f8z9r004766s7945j5nxwv3i2w879lzi4jww"; depends=[BiocGenerics data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggplot2 IRanges irlba Matrix patchwork pbapply Rcpp RcppRoll Rsamtools S4Vectors scales SeuratObject stringi tidyr tidyselect vctrs]; }; + Signac = derive2 { name="Signac"; version="1.9.0"; sha256="1a5gwfsr7fdc8405d23zxs9m54viik7m07xa1m1gs6argr13dzxq"; depends=[BiocGenerics data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggplot2 IRanges irlba Matrix patchwork pbapply Rcpp RcppRoll Rsamtools S4Vectors scales SeuratObject stringi tidyr tidyselect vctrs]; }; SignacX = derive2 { name="SignacX"; version="2.2.5"; sha256="0b38k3lxca985mqwvbbdczkjnn2x79kga05yw995gb6d20cjh96v"; depends=[igraph jsonlite lme4 Matrix neuralnet pbmcapply RColorBrewer RJSONIO Seurat]; }; SignifReg = derive2 { name="SignifReg"; version="4.3"; sha256="1f57zbc7746jr2hfgri29whw5nb7w8h9nwk2p2n851b1rf7q0mgp"; depends=[car]; }; Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="4.8"; sha256="16pzcs1g5ihza9a2glnkgd5pxi77l6w34vkn0vxcb78gc6syhbrd"; depends=[Deriv MASS]; }; @@ -4888,8 +4906,9 @@ in with self; { SimRVPedigree = derive2 { name="SimRVPedigree"; version="0.4.4"; sha256="0z7wwwl814bwaijkmg9wcdj5xisiamc9yqypmk0hzj950569aj8p"; depends=[dplyr kinship2]; }; SimReg = derive2 { name="SimReg"; version="3.3"; sha256="1liwwbi3zqrcbqx5przdlzhnq7jvyjd6yhaxalhwggzf9zv7w8ci"; depends=[ontologyIndex ontologyPlot ontologySimilarity Rcpp]; }; SimSCRPiecewise = derive2 { name="SimSCRPiecewise"; version="0.1.1"; sha256="0mhlx9m5db8a40wf275qh59345676m8bpjjmyx1v22f6m9p3b2n4"; depends=[]; }; + SimSST = derive2 { name="SimSST"; version="0.0.4.7"; sha256="0gjk9crif1z2kcqrk8ry6v72ykn0y5k9b1ar9qa8rqbq860f7wmx"; depends=[dplyr gamlss_dist]; }; SimSeq = derive2 { name="SimSeq"; version="1.4.0"; sha256="068gg484w07qb4wajik2s3z79xfj0jg5l4pz69267dxi5kzd9fas"; depends=[fdrtool]; }; - SimSurvNMarker = derive2 { name="SimSurvNMarker"; version="0.1.2"; sha256="1k62n56mzxv40j0g7631g6r18sgddwsl59wlyi0s5rzwjmiwpbgk"; depends=[Rcpp RcppArmadillo]; }; + SimSurvNMarker = derive2 { name="SimSurvNMarker"; version="0.1.3"; sha256="0ngr6cbhg3ccsm0v5mf3871pzxzmdprdap3kljfi8w6rrah830fx"; depends=[Rcpp RcppArmadillo]; }; SimSurvey = derive2 { name="SimSurvey"; version="0.1.5"; sha256="1i417kp7lcd7a19bna2y29sirgv30bb3xs8i4a2l6zmbq0kqsgf8"; depends=[data_table doParallel foreach magrittr plotly progress raster rlang sp]; }; SimTimeVar = derive2 { name="SimTimeVar"; version="1.0.0"; sha256="1x0lkgqwx1vz1gbyvy0hx20n638n30j0dny1iz5vs0cvviq3cdv8"; depends=[car corpcor ICC metafor miscTools mvtnorm plyr psych]; }; SimVitD = derive2 { name="SimVitD"; version="1.0.2"; sha256="1ddzp43bnna6n96h6qkqfis1l7mihf20wcy98cn37ri96zacwly4"; depends=[simpleboot]; }; @@ -4915,8 +4934,8 @@ in with self; { Sleuth3 = derive2 { name="Sleuth3"; version="1.0-3"; sha256="0ngwri80cwqs50wjza8qyzzwign4ag1ck7fa1x7q5x08w9x6w08m"; depends=[]; }; SlidingWindows = derive2 { name="SlidingWindows"; version="0.2.0"; sha256="0hvxg4hrk3rb1wxhi71rgamxd8wcwys569137znfs0y8j6yvf0jj"; depends=[DCCA nonlinearTseries PerformanceAnalytics TSEntropies]; }; SmCCNet = derive2 { name="SmCCNet"; version="0.99.0"; sha256="0ixvh1pd1gzbscwg4xjlcgxq5c9vqahil0fysfjc3fnba3wiidzx"; depends=[igraph Matrix pbapply PMA]; }; - SmallCountRounding = derive2 { name="SmallCountRounding"; version="1.0.2"; sha256="1alcy02qz5fkk24xaja0cgnf36sn0rv0439d2w8sj2vw1dsrzm87"; depends=[Matrix SSBtools]; }; - SmartEDA = derive2 { name="SmartEDA"; version="0.3.8"; sha256="07686x8l25pd0166n6s86zlnj8s10g6by2kd55rfh5didqx8zmsv"; depends=[data_table GGally ggplot2 gridExtra ISLR qpdf rmarkdown sampling scales]; }; + SmallCountRounding = derive2 { name="SmallCountRounding"; version="1.0.3"; sha256="1jnhfzjd2x54h35si1wrr91dkzdzc502m07mvvb894y5pq5q823a"; depends=[Matrix SSBtools]; }; + SmartEDA = derive2 { name="SmartEDA"; version="0.3.9"; sha256="0fmqi3kl20xdrnpbbsk22rrhj2xqckb777mcwdjgwxvc77r88bjf"; depends=[data_table GGally ggplot2 gridExtra ISLR qpdf rmarkdown sampling scales]; }; SmartMeterAnalytics = derive2 { name="SmartMeterAnalytics"; version="1.0.3"; sha256="0i8my7ngzdbay3cld8axhvbri0nh0dd1dmv2lbsgyx4adr5hb30f"; depends=[FNN futile_logger plyr stinepack zoo]; }; SmartSVA = derive2 { name="SmartSVA"; version="0.1.3"; sha256="10a8s2znsg8ywqkq9fsxiyqfsprrx33pqissazp2vmabs11mg4np"; depends=[isva Rcpp RcppEigen RSpectra sva]; }; SmarterPoland = derive2 { name="SmarterPoland"; version="1.8"; sha256="19pxr1zch2bm5jw676dp0p2crvmdmvzyxz07vhx926axpb4i0xbp"; depends=[ggplot2 htmltools httr jsonlite rjson]; }; @@ -4926,7 +4945,6 @@ in with self; { Snake = derive2 { name="Snake"; version="1.0"; sha256="10i1bqsva70lzavfqvc56ga70ddjfwf0hqpspj8fqwa0jw86jmbh"; depends=[]; }; SnakesAndLaddersAnalysis = derive2 { name="SnakesAndLaddersAnalysis"; version="2.1.0"; sha256="0h3664h6d32q201qfyv9y2gg4fhg3azdpwpmx4qfbc10hsc1ghl9"; depends=[]; }; SnowballC = derive2 { name="SnowballC"; version="0.7.0"; sha256="1wwm71mp4b2mjb5985x782p6xj519dfrpd40qli7lmig6afyw3xi"; depends=[]; }; - SoDA = derive2 { name="SoDA"; version="1.0-6.1"; sha256="0d3jb1dsg1q06c08ldmhj0q2sb1pc0g08rfal29ddng3b4qm1lhh"; depends=[]; }; SobolSequence = derive2 { name="SobolSequence"; version="1.0"; sha256="1vmp5jix3zvasvdirv8m88jc0cd8f34b4m1jvhs8g3v9lk8pxrrr"; depends=[Rcpp]; }; SocialPosition = derive2 { name="SocialPosition"; version="1.0.1"; sha256="1rrrjlq6czzhzipvkisbq024ca22v2vzx7wa4ddr9j7hnyyzzpic"; depends=[]; }; Sofi = derive2 { name="Sofi"; version="0.16.4.8"; sha256="0h9ir0xrwmsabfhwsr9hbpwabh1fsb3p51y8qcgm92iyvc6dl3mf"; depends=[foreign sampling shiny]; }; @@ -4944,19 +4962,15 @@ in with self; { SortedEffects = derive2 { name="SortedEffects"; version="1.7.0"; sha256="188qlgg3m8f07hbjim65yw3qy6200y0b54imkdqm8mq0f14nmi0f"; depends=[boot Hmisc pbapply quantreg SparseM]; }; SoundShape = derive2 { name="SoundShape"; version="1.2.1"; sha256="1fkwvvb5pw2qf950hb1d1y6bkazs09hgxd6nn933lhn8ci2v9bzc"; depends=[abind geomorph plot3D reshape2 seewave tuneR]; }; SoundexBR = derive2 { name="SoundexBR"; version="1.2"; sha256="0chc332v3wcz30v70yvdxhvcfdmvf4fj193cn00gl899xfxal89p"; depends=[]; }; - SoupX = derive2 { name="SoupX"; version="1.6.1"; sha256="083kyikziwai7dgj4gl758vy5nss2ppnmvc6ily5wzz4v4g3ff95"; depends=[ggplot2 Matrix Seurat]; }; + SoupX = derive2 { name="SoupX"; version="1.6.2"; sha256="19g3gqgiqllpafc9ihlm083d47zqiygh4p2dhy54k486gk6jcqlv"; depends=[ggplot2 Matrix Seurat]; }; + SourceSet = derive2 { name="SourceSet"; version="0.1.5"; sha256="17dbxdqm9jkhyip6xdwrxsqqyncs5skclbi9drjbdcw745p7c6lh"; depends=[graph gRbase gtools igraph plyr progress reshape2 scales]; }; SoyNAM = derive2 { name="SoyNAM"; version="1.6.2"; sha256="1ajsk51bd9aajlyv9q6yjmdm9xs9jf07j5m189m00mhl21xpzn0b"; depends=[lme4 NAM Rcpp RcppEigen reshape2]; }; SoyURT = derive2 { name="SoyURT"; version="1.0.0"; sha256="0l710ijqmqvpcsxaqia1g1bm5317qp1cc2nsf5ccz1vmgqxrxn1g"; depends=[]; }; - SpATS = derive2 { name="SpATS"; version="1.0-17"; sha256="0f8mwycm0344crvp8y04ccq6rvxmvwcz43l24av3hlx7wk392c3a"; depends=[data_table fields spam]; }; + SpATS = derive2 { name="SpATS"; version="1.0-18"; sha256="1p7ibi4593a6f5ww02l74afxaxgk2nh8h67l43vm2p7zfmdxx2b3"; depends=[data_table fields spam]; }; SpNMF = derive2 { name="SpNMF"; version="0.1.1"; sha256="1xybxx47i3ww5d7chwl38xc48fbsclgyxcki8h85c6dkm49dxy8i"; depends=[NMF]; }; - SpNetPrep = derive2 { name="SpNetPrep"; version="1.2"; sha256="1jhjyrb0k5z21vn9bc444rxax3lxsyzyhggrcy7zl9ps7p4ra990"; depends=[leaflet maptools prodlim raster rgdal shiny shinythemes sp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; SpTe2M = derive2 { name="SpTe2M"; version="1.0.1"; sha256="1qcjxr25v5m0nab3xq4bgzilmx2vgibgxnax5bhybfdaskgflhz5"; depends=[glmnet MASS]; }; SpaCCr = derive2 { name="SpaCCr"; version="0.1.0"; sha256="0qm1fr6nnax3i1i77fi73x1z8db557avh6kivs0nskb1dfj8ri4m"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo tidyr]; }; - SpaDES = derive2 { name="SpaDES"; version="2.0.9"; sha256="11acb05b957qwbii701y1b4lvcnvmiixkrlmqkccc8n9icqq107n"; depends=[quickPlot reproducible SpaDES_core SpaDES_tools]; }; - SpaDES_addins = derive2 { name="SpaDES.addins"; version="0.1.4"; sha256="0ly411y95rcm30slaj02vn7clmyq3dvinzg1x40vbsqzcjjg1h6l"; depends=[magrittr miniUI reproducible rstudioapi shiny SpaDES_core stringi]; }; - SpaDES_core = derive2 { name="SpaDES.core"; version="1.1.0"; sha256="0rmdwyk4733skf3mgi879lcg5hjiv72mf96yby3a0x9v2lzlzbv7"; depends=[crayon data_table fastdigest igraph lobstr qs quickPlot raster reproducible Require whisker]; }; - SpaDES_tools = derive2 { name="SpaDES.tools"; version="1.0.0"; sha256="1p1mj9gfgikqng5p9yj01ykxnrqvxcgd6ghi7amgqlkhv9mbjwhi"; depends=[backports checkmate CircStats data_table fastmatch fpCompare magrittr quickPlot raster Rcpp Require rgeos sp]; }; - SpaceTimeBSS = derive2 { name="SpaceTimeBSS"; version="0.1-0"; sha256="0rf07v3hcdqd0lp1jzbr08ijg23z6dp6kypxnq1fh1yvyq9nzy87"; depends=[JADE Matrix Rcpp RcppArmadillo]; }; + SpaceTimeBSS = derive2 { name="SpaceTimeBSS"; version="0.2-0"; sha256="1s4q7nb00616s229p7jrap8df8d8p5bxflskprq2h62mx22dlfsz"; depends=[JADE Matrix Rcpp RcppArmadillo]; }; SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; }; SparseBiplots = derive2 { name="SparseBiplots"; version="4.0.1"; sha256="0jiyafhsddqa3llrp62lf8bgcvs3wp2pxc8ppaxx4zphkifw2yhr"; depends=[ggplot2 ggrepel gtable rlang sparsepca testthat]; }; SparseChol = derive2 { name="SparseChol"; version="0.1.1"; sha256="1agfl3a7vxjxx64qf76v6a796vmviv3dcp4h7127nr2lg5nx4446"; depends=[Matrix Rcpp]; }; @@ -4969,15 +4983,15 @@ in with self; { SparseMSE = derive2 { name="SparseMSE"; version="2.0.1"; sha256="1alpvj0ya3r64wwfdzz2aaxgaf6512glzl65p97606c2fwrm6db7"; depends=[lpSolve Rcapture]; }; SparseTSCGM = derive2 { name="SparseTSCGM"; version="4.0"; sha256="01lfb3j907244hgapb85kba7zdmgzhw452gri208qgrjzfv2x9yh"; depends=[abind glasso huge longitudinal MASS mvtnorm network]; }; SparseVFC = derive2 { name="SparseVFC"; version="0.1.0"; sha256="1qv7vnalwp2jn302r53c3yfiyz51qzr0fi1ishmbal2bh3j910b7"; depends=[pdist purrr]; }; - SpatEntropy = derive2 { name="SpatEntropy"; version="2.1-1"; sha256="0navil5wjzw67diz87ijnaikx4ws7fnbqqbmpdxhla6dfdd8yhd5"; depends=[spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; }; + SpatEntropy = derive2 { name="SpatEntropy"; version="2.2-0"; sha256="0vp4mns6izycz9sznzqmww4h34gbk5nwfnnx10yba4l7y78zjjkg"; depends=[spatstat spatstat_geom spatstat_random]; }; SpatialAcc = derive2 { name="SpatialAcc"; version="0.1-4"; sha256="09rkzfzg6nh4n7dizkqrz651kp617l2557c9qpxacspl3ngbm82i"; depends=[sp]; }; - SpatialBSS = derive2 { name="SpatialBSS"; version="0.12-0"; sha256="173zr8r0wp7zcg4ziqagfzzlwf5gjcywj5nqvsnnpwbgjagpfla1"; depends=[JADE Rcpp RcppArmadillo sp]; }; + SpatialBSS = derive2 { name="SpatialBSS"; version="0.13-0"; sha256="15bv6w576ch5fb7limnpm7m4n9yws8qsrmgvgvxqaq8fb5c5n8mr"; depends=[distances JADE Rcpp RcppArmadillo robustbase sp SpatialNP]; }; SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.7"; sha256="0hfspksv9dgi98kcjwa291x8dglskfl4d1cjkd2hqxlf73havpzx"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.1-0"; sha256="0z1swxp1syz8hdskarjxx4sdd7wx835kcnb783bwqm235yh991j3"; depends=[fields maps]; }; SpatialGEV = derive2 { name="SpatialGEV"; version="1.0.0"; sha256="0g4v84a4c14a2vf7y055j9jgcki7q4182lmmmphrahiqwnjxhm1b"; depends=[evd mvtnorm TMB]; }; SpatialGraph = derive2 { name="SpatialGraph"; version="1.0-2"; sha256="0cwswa5g3a6ng8qkwi04jz9pma4i0c16m7jpq6z3djzjin0znyk2"; depends=[igraph rgeos shape sp splancs]; }; SpatialKDE = derive2 { name="SpatialKDE"; version="0.8.0"; sha256="0qnyriiy1401darnmjdcpsyp76ib822djz8bsgv4xnx9armhkh6a"; depends=[cpp11 dplyr glue magrittr progress raster rlang sf vctrs]; }; - SpatialKWD = derive2 { name="SpatialKWD"; version="0.4.0"; sha256="0nsrf30bl3yc1h1kldv1ah1jjb4qh4hd99rd1nz9q9rqmdp0dcrw"; depends=[Rcpp]; }; + SpatialKWD = derive2 { name="SpatialKWD"; version="0.4.1"; sha256="0b5vfsmpl3zxcwsg7bj85kfbyv8a2bgfq72b3rk4r6ms7ngc5i16"; depends=[Rcpp]; }; SpatialML = derive2 { name="SpatialML"; version="0.1.5"; sha256="13didlxl9fn5h48fyz29f2vh3vi8g2fisbnaraqlgwn5fbsg3ihd"; depends=[caret ranger]; }; SpatialNP = derive2 { name="SpatialNP"; version="1.1-5"; sha256="0cxh1f4182mfihq6m82zh2lgafrsiqvgrfxbk66zkjrrbfn8gkcl"; depends=[]; }; SpatialPOP = derive2 { name="SpatialPOP"; version="0.1.0"; sha256="0pgd4injkimjp6pid42arhfbavx2i8crkdvqr35bjvf26p7hbvv3"; depends=[MASS numbers qpdf]; }; @@ -4987,7 +5001,7 @@ in with self; { SpatialRoMLE = derive2 { name="SpatialRoMLE"; version="0.1.0"; sha256="1m80vcd27g11v0gxnjz6p4ghljpxdb8jpkns8ry5yzhfvcpf29jc"; depends=[]; }; SpatialTools = derive2 { name="SpatialTools"; version="1.0.4"; sha256="0jgbrzsx2klvihv65y1ycqyr8awp5kqqz4qwfyfibx3b56lzna1q"; depends=[Rcpp RcppArmadillo spBayes]; }; SpatialVS = derive2 { name="SpatialVS"; version="1.1"; sha256="1xghfiz9wmmx11ssms7zjy3ggkjmc6kkbdwp3v5wjwpwapafzdk3"; depends=[fields MASS nlme]; }; - SpatialVx = derive2 { name="SpatialVx"; version="1.0"; sha256="1320dl8sr9zqka2pa361gsi3sr4clzz7bp7zj1p07khyz3xchinf"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat spatstat_core spatstat_geom spatstat_linnet turboEM waveslim]; }; + SpatialVx = derive2 { name="SpatialVx"; version="1.0-1"; sha256="06l2p3p24s08diq6g6301hk8fmc4wd43wc94a4jl31lq6zjihiwc"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat spatstat_geom spatstat_linnet spatstat_model turboEM waveslim]; }; SpatialfdaR = derive2 { name="SpatialfdaR"; version="1.0.0"; sha256="14l3fvwrzyrldbk8d2p0syk9lmhn208yi20493qd41babsaaxll3"; depends=[fda geometry knitr rgl rmarkdown]; }; Spbsampling = derive2 { name="Spbsampling"; version="1.3.5"; sha256="0p98l58qfc4ddimmqca77cr536q2pnrlcb3r344c7apnakidz7ng"; depends=[Rcpp RcppArmadillo]; }; SpeTestNP = derive2 { name="SpeTestNP"; version="1.1.0"; sha256="1767xhnfdq9qm626j8jr0l6vnr7kkljsyarz3y318y33ja3rx71j"; depends=[doParallel foreach]; }; @@ -5000,15 +5014,14 @@ in with self; { SphereOptimize = derive2 { name="SphereOptimize"; version="0.1.1"; sha256="1b01jpj0sagi3hwfvgd346wvrcypv5b3hh0xfdd8qqnwjgkq8ixi"; depends=[]; }; SphericalCubature = derive2 { name="SphericalCubature"; version="1.5"; sha256="03j9f9v3zrykrd4lc74i19s3xyc0z3l2kg3056qg591sxw64h7vh"; depends=[abind cubature mvmesh SimplicialCubature]; }; SphericalK = derive2 { name="SphericalK"; version="1.2"; sha256="18py4ylm10s75pihjvcy7w948379zy9l9azriw7g7pyp7px29wda"; depends=[]; }; - Spillover = derive2 { name="Spillover"; version="0.1.0.2"; sha256="0a9gvr2p4xdd47k8vfjyq952svfxvfvqzp6bkbsjj0mdjvjq3kaj"; depends=[dplyr fastSOM ggplot2 tidyr vars zoo]; }; Splinets = derive2 { name="Splinets"; version="1.0.0"; sha256="1fws9svxvn03xgfqmqwr169wgl544zv87yrdi4nl5z32cq5c9yk5"; depends=[]; }; - SplitGLM = derive2 { name="SplitGLM"; version="1.0.4"; sha256="0wi2zmd1fc2k1xdnjidihbv33iyiwxqqng3pnk3alf4x7ka67pb3"; depends=[Rcpp RcppArmadillo]; }; + SplitGLM = derive2 { name="SplitGLM"; version="1.0.5"; sha256="0i9fs09bch3qsf6b6sws82hd5rzhhfcf17f30b5w7b2rr0sc9dxa"; depends=[Rcpp RcppArmadillo]; }; SplitKnockoff = derive2 { name="SplitKnockoff"; version="1.2"; sha256="1ywh86gkkcc2dddqfgs5w8w9wyjfqmvcr31jga41ddvj5rb8zkhx"; depends=[ggplot2 glmnet latex2exp MASS Matrix mvtnorm RSpectra]; }; SplitReg = derive2 { name="SplitReg"; version="1.0.2"; sha256="1s012qldrsq8rpfpzf7kyd7631b65zai269x53xcaqn75r5ssh3f"; depends=[Rcpp RcppArmadillo]; }; SplitSoftening = derive2 { name="SplitSoftening"; version="2.1-0"; sha256="1fgcqax81zpknw642fm9dx1f6dpdgbcf3va0m1bhj6kl98yq7dqd"; depends=[]; }; SportsTour = derive2 { name="SportsTour"; version="0.1.0"; sha256="06d66yv0b7c3mg1bcnrlg576njxgri107ni0vnl27hzf46fyidwa"; depends=[]; }; SpotSampling = derive2 { name="SpotSampling"; version="0.1.0"; sha256="0s47dvigzkcl9ynrdiwrjzwap18dpkb29jngi8ddvf9m4xywj4al"; depends=[BalancedSampling MASS pracma sampling WaveSampling]; }; - SqlRender = derive2 { name="SqlRender"; version="1.10.0"; sha256="0rkmja3da8fn5klmd4wyg3ws0k2gbk2cxxj69cnhm4q7vxywwwl7"; depends=[checkmate rJava rlang]; }; + SqlRender = derive2 { name="SqlRender"; version="1.11.0"; sha256="0n2gxfvzjsg3p0wgras394lf182gi9nwn9v3cn8isyqg61zsl2p1"; depends=[checkmate rJava rlang]; }; SqueakR = derive2 { name="SqueakR"; version="1.3.0"; sha256="09l6dj1xq2zxxy6jnh1dl4rlcbx06fvf0jp2nypv3497dn97jsrh"; depends=[dplyr ggcorrplot ggeasy gghighlight ggplot2 ggpubr googlesheets4 MASS plotly RColorBrewer readxl report rlist rstatix shiny shinydashboard]; }; Sshaped = derive2 { name="Sshaped"; version="1.1"; sha256="0jy926ykyw7a2q0wabbvm2sm2g4d5y8wl6na4xjmf0ybr6rma458"; depends=[Rcpp RcppArmadillo]; }; Sstack = derive2 { name="Sstack"; version="1.0.1"; sha256="137vsas2kw3l37c141g51sgx0j6z8ys6hbxjmsdymz1fxsjr4adg"; depends=[doParallel dplyr foreach randomForest]; }; @@ -5026,6 +5039,7 @@ in with self; { StatMatch = derive2 { name="StatMatch"; version="1.4.1"; sha256="1iavyaj6q8rbvhki98q8zwikfrgjrp6w8prhnqhiv0yb8k27jm0c"; depends=[ggplot2 lpSolve proxy survey]; }; StatPerMeCo = derive2 { name="StatPerMeCo"; version="0.1.0"; sha256="1nm6brlj6h7jx8nqagrfk294ay3pfmkiizabwlb87qfnsfwchpk3"; depends=[]; }; StatRank = derive2 { name="StatRank"; version="0.0.6"; sha256="14d8v3bp8vgksi6q0mxajwd9s8zi6lns3qwi1vcr5xp9rjp4n6iy"; depends=[ggplot2 plyr truncdist]; }; + StatTeacherAssistant = derive2 { name="StatTeacherAssistant"; version="0.0.1"; sha256="0n9na9mzjzcgkq97ix1v3dxhzbc6c9s8g3rm4ikwsa2j4asrfbrd"; depends=[DescTools dplyr DT ggplot2 plotly rhandsontable rio rmatio shiny shinyalert shinyBS shinyjs sortable stringi stringr teachingApps tidyr]; }; Statsomat = derive2 { name="Statsomat"; version="1.1.0"; sha256="1lfgbbf1pcfbih5nfb6rbiq2h0hlxg1fzmcf4330yc48r998q4x6"; depends=[car corrplot data_table DDoutlier energy ggplot2 gridExtra kableExtra knitr readr reshape2 rmarkdown shiny shinydisconnect]; }; SteinIV = derive2 { name="SteinIV"; version="0.1-1"; sha256="1bm4lc7g9h9jkb1dpzb84289bwxcywp0a8vylv6ipvhiqbqk5d95"; depends=[]; }; SteinerNet = derive2 { name="SteinerNet"; version="3.1.0"; sha256="03wr746dkwp8vg91y986q0xvgz1y9b5q25g0kig2sx6m75li3yif"; depends=[igraph]; }; @@ -5046,7 +5060,7 @@ in with self; { StratifiedMedicine = derive2 { name="StratifiedMedicine"; version="1.0.5"; sha256="0q1d5jar5x2v9bsrfzv73wirgbkvy16ibzq93qv9b6c4zj3q75r7"; depends=[coin dplyr ggparty ggplot2 glmnet mvtnorm partykit ranger survival]; }; StratifiedRF = derive2 { name="StratifiedRF"; version="0.2.2"; sha256="0a5djia6xacs17nnr5knr1acwzicrffz73q9nvnhdmihazq8v27d"; depends=[C50 dplyr]; }; StratifiedSampling = derive2 { name="StratifiedSampling"; version="0.4.1"; sha256="15gg1qc2znyba2y6kq8qq6wz69lq3kkpps0a3j9jdq8n67x65zkp"; depends=[MASS Matrix proxy Rcpp RcppArmadillo Rglpk sampling transport]; }; - StratigrapheR = derive2 { name="StratigrapheR"; version="1.2.5"; sha256="0wc4q3y8n9wd79dwjn5i4y4b5h8yk3g9x3ifg7dxsryk5i2wml0c"; depends=[diagram dplyr reshape shiny stringr XML]; }; + StratigrapheR = derive2 { name="StratigrapheR"; version="1.3.0"; sha256="01pj1in36cjsfpavhlx56by3pxxxqy1chvfpa73xsdbrqmjs975s"; depends=[diagram dplyr reshape shiny stringr XML]; }; StreamMetabolism = derive2 { name="StreamMetabolism"; version="1.1.2"; sha256="1sv30i7armk7jhxg5x9lh0r9qq3xixn1k2h0q89halkh1yraal8a"; depends=[chron maptools zoo]; }; StressStrength = derive2 { name="StressStrength"; version="1.0.2"; sha256="1fq26bzmwsk4nzz9bgasyxz9alw8x2ssahz67mham7vw483w79pd"; depends=[]; }; String2AdjMatrix = derive2 { name="String2AdjMatrix"; version="0.1.0"; sha256="058r30kjjna02nmd6ngqfcnn1yk5390i20xvl6qb5qk3bcp2wmxn"; depends=[stringr]; }; @@ -5074,10 +5088,11 @@ in with self; { Superpower = derive2 { name="Superpower"; version="0.2.0"; sha256="0bv2jx3hadp5d9c3q790in3m728c8jc1nkp9wqvzcdip1d29hyin"; depends=[afex dplyr emmeans ggplot2 gridExtra magrittr MASS mvtnorm reshape2 tidyr tidyselect]; }; SuppDists = derive2 { name="SuppDists"; version="1.1-9.7"; sha256="025b9nlxz62wk84295csyzbncpn80i3iby3sxdigf3swcgi2fmbb"; depends=[]; }; SurfaceTortoise = derive2 { name="SurfaceTortoise"; version="1.0.2"; sha256="1l586x9np5rclqdrnv8b72ixlppzlnsq4yf99ny6aq5a9lwzmcgm"; depends=[gstat raster rgeos sp]; }; - Surrogate = derive2 { name="Surrogate"; version="2.4"; sha256="1fp9dps1z8wjdbhzkz1wnr7ffpv2nm9cbqns03x5aj290h83bpza"; depends=[extraDistr ks lattice latticeExtra lme4 logistf MASS mixtools msm nlme pbapply rms rootSolve survival]; }; + Surrogate = derive2 { name="Surrogate"; version="2.5"; sha256="1zbzsjxsrmz1xh3ldxgas0yv2v9l6jqdr9hr002gq9hk5qhspk9m"; depends=[copula dplyr extraDistr flexsurv kdecopula ks lattice latticeExtra lme4 logistf MASS msm mvtnorm nlme pbapply rms rvinecopulib survival]; }; SurrogateOutcome = derive2 { name="SurrogateOutcome"; version="1.1"; sha256="1wiqn9gfvj225dvmp49fyybp77np507s04f28a9wa9jiyvqf7m97"; depends=[survival]; }; SurrogateRegression = derive2 { name="SurrogateRegression"; version="0.6.0"; sha256="0815zskr4g960wm6jcjn0ykmc0db8fg6vzfw97lfgm5m9bjd4h5c"; depends=[Rcpp RcppArmadillo]; }; SurrogateTest = derive2 { name="SurrogateTest"; version="1.3"; sha256="0vs1ii3l6i6cmswyv6xjbya5filfixppyzmnw099g9s4x8kn0kq7"; depends=[survival]; }; + SurvCorr = derive2 { name="SurvCorr"; version="1.1"; sha256="0pccjc9zdvbb869wfywm23l63h1bpi5px4q5x7fq54pm0iyi1k73"; depends=[fields survival]; }; SurvDisc = derive2 { name="SurvDisc"; version="0.1.1"; sha256="0ajvnm0a4krbm0m584bg58hd7dzl0f2rz5as1zsajx8agywb5qmv"; depends=[cubature MASS mvtnorm nlme simex survival]; }; SurvHiDim = derive2 { name="SurvHiDim"; version="0.1.1"; sha256="1kix00zfrbx11pwx2dfag8vz5nvf8siw2kbxi8g4fb7xib9wh2na"; depends=[factoextra glmnet igraph Rdpack readr survival tidyverse useful]; }; SurvLong = derive2 { name="SurvLong"; version="1.2"; sha256="15a92lj29ggxwyn52iiq1ns7jp8l8grk17wapffv109fypwhdnh1"; depends=[]; }; @@ -5085,7 +5100,6 @@ in with self; { SurvMetrics = derive2 { name="SurvMetrics"; version="0.5.0"; sha256="14hpvqg0k3ww5qla4s08nrqwcy27y76kfp7b0g1hzs3vv046fb7i"; depends=[MASS pec randomForestSRC survival survminer]; }; SurvRegCensCov = derive2 { name="SurvRegCensCov"; version="1.5"; sha256="0p39xqrnx2x0fgdfdr9ffv2x9zcgi53kqya821gpbnn3ccjzxx58"; depends=[numDeriv survival]; }; SurvTrunc = derive2 { name="SurvTrunc"; version="0.2.0"; sha256="0zkjlndmg0rc7ycqy2v42nyzs4sd9z1y9y9kwfdci9qrc88nnfmn"; depends=[survival]; }; - SurvivalPath = derive2 { name="SurvivalPath"; version="1.3.2"; sha256="17glrkz63ms76cmg7lfz0nay131ngwxigwfs0rzgfjna9gy06dgi"; depends=[dplyr ggplot2 ggtree Hmisc rms survival survivalROC survminer treeio]; }; SvyNom = derive2 { name="SvyNom"; version="1.2"; sha256="0s9gn10v6a8n6898g0gmdrw51z7y98klji59sn06dfbsxlswlv11"; depends=[Hmisc rms survey survival]; }; SwarmSVM = derive2 { name="SwarmSVM"; version="0.1-6"; sha256="09xq7jx70qjyhblzh6kc40hdr0636rqqdnbka7m6rawhd8ivp8yz"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; }; SwimmeR = derive2 { name="SwimmeR"; version="0.13.0"; sha256="16vimqdbsj7nb1cv0in6qza00qicajpdcpmzf3lv47wm5kp2iv6n"; depends=[dplyr magrittr pdftools purrr readr rvest stringr xml2]; }; @@ -5098,10 +5112,9 @@ in with self; { SyncRNG = derive2 { name="SyncRNG"; version="1.3.1"; sha256="05a5ifv5yy7brl76cmq7mgqm9s9gm7qgc1cfzih7q1jrw955k400"; depends=[]; }; SynchWave = derive2 { name="SynchWave"; version="1.1.2"; sha256="1y53235523z0nf4pmskdiz3xq4p8hdzvf5jy4ml4isj6nqzy6b88"; depends=[fields]; }; Synth = derive2 { name="Synth"; version="1.1-6"; sha256="0qi8534rw0z20l1m4hhcn2xm16g8rrqfvpy0fs4hik4xc5cjgmbg"; depends=[kernlab LowRankQP optimx rgenoud]; }; - SynthCast = derive2 { name="SynthCast"; version="0.2.1"; sha256="0gln7x1vlfdnr0qaqgagr93r484hv3dp65n24b3wl3p02msz9bgn"; depends=[dplyr forcats Synth tidyr]; }; SynthETIC = derive2 { name="SynthETIC"; version="1.0.2"; sha256="1z7jyal707a93hv0fsgnkxpnywqw6ksifk0546alzm32g5lp4655"; depends=[ggplot2 magrittr rlang]; }; SynthTools = derive2 { name="SynthTools"; version="1.0.1"; sha256="19vasz3nnm5vgwqs6g2a5bibmk44br1bxga5zavsx938x3jw9gnd"; depends=[dplyr magrittr Rdpack]; }; - Sysrecon = derive2 { name="Sysrecon"; version="0.1.0"; sha256="190djsdiqrkz21hpmzgf0ip3np60plpj0a34qxvp2y6lwygvmxpa"; depends=[ape dplyr ggplot2 ggtree patchwork plyr RColorBrewer readr readxl rlang SnowballC stringr tidyverse tm]; }; + Sysrecon = derive2 { name="Sysrecon"; version="0.1.2"; sha256="0qj0yvbfig6aphc7s10v5hhd30mn7rvdbzxkjfqnbzbfbvr5r2mz"; depends=[ape dplyr ggplot2 ggtree patchwork plyr RColorBrewer readr readxl rlang SnowballC stringr tidyverse tm]; }; SystemicR = derive2 { name="SystemicR"; version="0.1.0"; sha256="1vk08w734zxvrwzd81iy0azwcj53k6wvgc1qlaxw96hirdwdg6zr"; depends=[igraph Matrix quantreg xts]; }; T2EQ = derive2 { name="T2EQ"; version="1.1"; sha256="1skkkryw63pfx1xslia1lczb2psja6v6hcbph4isdcksb4l4pcig"; depends=[]; }; T2Qv = derive2 { name="T2Qv"; version="0.1.0"; sha256="1zx7r0axa7b83pynilp0rmw6apilzsqjacn426q4i4jlsvr1ba3k"; depends=[ca dplyr highcharter htmltools purrr shiny shinycssloaders shinydashboard shinydashboardPlus stringr tables tidyr]; }; @@ -5120,11 +5133,11 @@ in with self; { TCA = derive2 { name="TCA"; version="1.2.1"; sha256="1gyps0m7r44vcbzpbrs3xy2kyb2xsvmfzk1c0aq04s4ndcksplwb"; depends=[config data_table futile_logger gmodels Matrix matrixcalc matrixStats nloptr pbapply pracma quadprog rsvd]; }; TCGAretriever = derive2 { name="TCGAretriever"; version="1.5"; sha256="1xg1rz2h5jbpdd5axli3ripqxb0bj64yrd4y5nzr8axajiaybkj9"; depends=[httr]; }; TCIApathfinder = derive2 { name="TCIApathfinder"; version="1.0.6"; sha256="15f3w6vhbqy4xzidxasjnqigxchd3jbr2kpm3gggjnkp7rzsfgaf"; depends=[httr jsonlite]; }; - TDA = derive2 { name="TDA"; version="1.8.7"; sha256="0jppqk7h9nq1ysdgkqbywsc313v9gvmnlrmsvidgdc9sa1qxw6di"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; + TDA = derive2 { name="TDA"; version="1.8.8"; sha256="174fy3m5l1hlkhiyg2zbi4aq4anmyb1gm0nqmydbp80mbf84krj1"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; TDAkit = derive2 { name="TDAkit"; version="0.1.2"; sha256="1gvcv3016kjk98qm07i972fi66bcljj1avmagyc8qxs29cq3ngg3"; depends=[energy ggplot2 maotai Rcpp RcppArmadillo Rdpack T4cluster TDAstats]; }; - TDApplied = derive2 { name="TDApplied"; version="0.1.3"; sha256="17x9mfvygv5jmrymkkig1b882j3w7cww0xxcb4hvnc9ia01xcj8y"; depends=[clue doParallel foreach iterators kernlab parallelly rdist]; }; + TDApplied = derive2 { name="TDApplied"; version="2.0.0"; sha256="07vw667v5cnh6dxsggxb6028yl2xlxbqw0wr90whd45q61cjmfkv"; depends=[clue doParallel foreach iterators kernlab parallelly rdist]; }; TDAstats = derive2 { name="TDAstats"; version="0.4.1"; sha256="1zmickqk60vm9rzy67hib835v3c45aqjk441p31vpbvhbiy58nq5"; depends=[ggplot2 Rcpp]; }; - TDAvec = derive2 { name="TDAvec"; version="0.1.2"; sha256="1zw5yaym5q358vrppzdgqxwb4hhbqav69pvxb2wlanxap9rkxix8"; depends=[microbenchmark Rcpp TDA]; }; + TDAvec = derive2 { name="TDAvec"; version="0.1.3"; sha256="0g449p1y16sl35md9c4qnj3n7i5nx9appqx22d7ijjhr7zpv0p1s"; depends=[microbenchmark Rcpp TDA]; }; TDCor = derive2 { name="TDCor"; version="0.1-2"; sha256="18085prcwhl5w717f1f7jcqskw2jvigvjjs2l5y6106ibiam6hxx"; depends=[deSolve]; }; TDPanalysis = derive2 { name="TDPanalysis"; version="1.0"; sha256="0kvbsgwl7b9a3hn4d3snajqmynbajd2d8lc1na0hri2cv8qm8x9h"; depends=[plyr]; }; TDbook = derive2 { name="TDbook"; version="0.0.6"; sha256="127bvwy65fr0nm7gw4mqcjm6dfrvlnl77z4ig2bpfxy7a0xq67gp"; depends=[]; }; @@ -5141,7 +5154,7 @@ in with self; { TGST = derive2 { name="TGST"; version="1.0"; sha256="1xnb41ksggdi57gnkjaab98c4nfdkxqx53rv9pyh3j0cg0kbkk9v"; depends=[ggplot2 knitr]; }; TH_data = derive2 { name="TH.data"; version="1.1-1"; sha256="0ynxacnz002bjsp2ybql7rdqw4zd14af8r7w44nwbx22n4bapwzd"; depends=[MASS survival]; }; TIGERr = derive2 { name="TIGERr"; version="1.0.0"; sha256="04nnm0adf0sbgv7a2ikaq2a5kb9j1xmdfmssizm49q5j457rrl7d"; depends=[pbapply ppcor randomForest]; }; - TIMP = derive2 { name="TIMP"; version="1.13.2"; sha256="1y1bc6wsd32792apsc6qncxbw5y8ww9xlhy9v49mhwbffgzn6llg"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; + TIMP = derive2 { name="TIMP"; version="1.13.6"; sha256="1if2qm40nlz54pylqvdp4pk2jmicn8wkdlywrkr5hn80c0yyy879"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; TITAN2 = derive2 { name="TITAN2"; version="2.4.1"; sha256="16zf42s1as2xrvyhd0lnv36mgnr5w19xv11pkl0k8imb5bdkhxa2"; depends=[cowplot dplyr ggplot2 ggridges glue purrr snow tibble]; }; TKCat = derive2 { name="TKCat"; version="1.0.6"; sha256="1z4ili1hn4nfkg4v84s8xamwxpyfjdyi0b7xpw795d6x80ar3ssk"; depends=[base64enc ClickHouseHTTP DBI dplyr DT future getPass htmltools jsonlite jsonvalidate magrittr markdown Matrix promises readr ReDaMoR rlang shiny shinydashboard tidyselect uuid visNetwork xml2]; }; TLMoments = derive2 { name="TLMoments"; version="0.7.5.3"; sha256="096sr0j4vhlfsaxc565zgw0mjk4sxkl03i7ip3hzcfph1c05yj6h"; depends=[ggplot2 hypergeo lmomco Rcpp]; }; @@ -5190,6 +5203,7 @@ in with self; { TSPred = derive2 { name="TSPred"; version="5.1"; sha256="14dzpm5i5iml9kb49rnw7kq1ga03l4c6m485b1p8p3ya0n6mivkl"; depends=[dplyr e1071 elmNNRcpp EMD forecast keras KFAS magrittr ModelMetrics MuMIn nnet plyr randomForest Rlibeemd RSNNS tfdatasets vars wavelets]; }; TSS_RESTREND = derive2 { name="TSS.RESTREND"; version="0.3.1"; sha256="1la1ff9ajcabdsz5f2761647304fpwp779gv0gjds4mg25rf6n2f"; depends=[bfast broom ggplot2 mblm RcppRoll strucchange]; }; TSSS = derive2 { name="TSSS"; version="1.3.1"; sha256="06wnbj741yyi5b483zhbaccvqpbg8lh3z9vnrxy64x28hnn79cly"; depends=[]; }; + TSSVM = derive2 { name="TSSVM"; version="0.1.0"; sha256="07jf5s557j2xr5918fa0rkzz0ivb01acyzw2cbky92wjd21qa97s"; depends=[e1071 forecast]; }; TSTutorial = derive2 { name="TSTutorial"; version="1.2.4"; sha256="0kbs703nmi1z19r6bcz243sm50ijxwmsx6kcw0g18wmz7v8bj9c5"; depends=[MASS]; }; TSVC = derive2 { name="TSVC"; version="1.2.2"; sha256="0c2dwsb17al6vfgk38xlbzww08xa1i2lji1bhzc3zlp7nb4mkxy8"; depends=[mgcv plotrix]; }; TSclust = derive2 { name="TSclust"; version="1.3.1"; sha256="1pj984sf7z0bakr55jqcrxr4mh4gihdv197m2k05phpp5hsplsjh"; depends=[cluster dtw forecast KernSmooth locpol longitudinalData pdc]; }; @@ -5237,15 +5251,16 @@ in with self; { Tendril = derive2 { name="Tendril"; version="2.0.4"; sha256="1wvczfklsccs8jd081vb6d6h7i35lhf6na925fm7wq8ars0b23wd"; depends=[dplyr ggplot2 magrittr plotly plyr reshape2 scales]; }; TensorClustering = derive2 { name="TensorClustering"; version="1.0.2"; sha256="094pk4v78d97sanrkirk0dyhy6w2i43imcw21q2r76w11d62w7k7"; depends=[abind combinat MASS mvtnorm pracma Rcpp rTensor tensr TRES]; }; TensorComplete = derive2 { name="TensorComplete"; version="0.1.0"; sha256="06lr0blkf5pv1zwlffn7m0xxscjii4jg930nkzrh2k7dnbka6vsx"; depends=[MASS pracma tensorregress]; }; + TensorPreAve = derive2 { name="TensorPreAve"; version="0.1.1"; sha256="01dd9ny8ikrhdsi3rv9nhs10rn0ps8dly8qpqk576qqc8yb0d506"; depends=[MASS pracma rTensor]; }; TensorTest2D = derive2 { name="TensorTest2D"; version="1.1.1"; sha256="1yx1ggsbximbsrwimyg7jblbqr0f75z278f38hg61qjxzf9m4ndk"; depends=[]; }; - Ternary = derive2 { name="Ternary"; version="2.1.1"; sha256="119jb2j17qhahybl46h8bnijaq5mprssk58c1lbyc57agk0pafiw"; depends=[shiny sp viridisLite]; }; + Ternary = derive2 { name="Ternary"; version="2.1.2"; sha256="11g5ya43xgw45y8lngqj3xgbxxglnankj8fj40qij3f1qjggzwnw"; depends=[shiny sp viridisLite]; }; TesiproV = derive2 { name="TesiproV"; version="0.9.2"; sha256="00igkm0y9v363djhig4ydn3bfadqf6rrrdhkai2pl1w876xk2ydw"; depends=[edfun ggplot2 gridExtra nloptr pracma]; }; TestCor = derive2 { name="TestCor"; version="0.0.2.2"; sha256="01ndiqi0z672ymm2bid0r0cqz8fqd9268xgmmq74z3agj81l5c5j"; depends=[MASS Rcpp RcppArmadillo]; }; TestDataImputation = derive2 { name="TestDataImputation"; version="2.3"; sha256="11acpw9vjar6g8n9cifpfs4208j1hqqp15j59mr9pnfwq747hw2z"; depends=[Amelia mice]; }; TestDesign = derive2 { name="TestDesign"; version="1.3.4"; sha256="1fz1krvl62bk97sw2swj5cwji34kwc6ni3l10p2xnisfnhll28m7"; depends=[crayon foreach logitnorm lpSolve Rcpp RcppArmadillo]; }; TestDimorph = derive2 { name="TestDimorph"; version="0.5.5"; sha256="00mh7g6ijlimkfk35yjkmhbx1aqc511v3002q73ppx5977a7zwf0"; depends=[corrplot dplyr ggplot2 Morpho multcompView tidyr tmvtnorm truncnorm]; }; TestFunctions = derive2 { name="TestFunctions"; version="0.2.0"; sha256="018nkz8r6vqahrzq3d588i3ffb1bmd1pdk87j4ivcdsx99mq15sn"; depends=[]; }; - TestGardener = derive2 { name="TestGardener"; version="3.0.0"; sha256="1d479myp6f8w358ywjjvpayz1kx5rmyzkgr72nhxjwg0rgw9chgp"; depends=[dplyr fda ggplot2 ggpubr knitr pracma rgl rmarkdown stringr tidyr utf8]; }; + TestGardener = derive2 { name="TestGardener"; version="3.1.0"; sha256="1fwad1hanslrxi8vhwd2v99qsd5bnz8nd0knxcq1q0mdp6i7lbxb"; depends=[dplyr fda ggplot2 ggpubr knitr pracma rgl rmarkdown stringr tidyr utf8]; }; TestScorer = derive2 { name="TestScorer"; version="1.7.2"; sha256="006c3g3gx55mfr93srldwvgz5vm6nkr3f57yi4qg6krn0d32865f"; depends=[]; }; TestingSimilarity = derive2 { name="TestingSimilarity"; version="1.1"; sha256="1iq0wh13rl6rby44ql4d286r1akzwmbpsvnq9p8lkl8709z0d34w"; depends=[alabama DoseFinding lattice]; }; TexExamRandomizer = derive2 { name="TexExamRandomizer"; version="1.2.3"; sha256="0l0vpx4rkib2m8hwhwy9j8pqyf7gpb9qg8wpnh3238snwpadgy3a"; depends=[assertthat jsonlite Rcpp stringr]; }; @@ -5257,22 +5272,20 @@ in with self; { ThermalSampleR = derive2 { name="ThermalSampleR"; version="0.1.0"; sha256="1cl14scgczsc9xvvp5cjk548a48a7vmnc6dgsdhl8bqlkkrp1aly"; depends=[cowplot dplyr EnvStats ggplot2 janitor magrittr MASS purrr rlang sn tidyr]; }; Thermimage = derive2 { name="Thermimage"; version="4.1.3"; sha256="1623r64v97ii8qq6cfrg0jrdl7nwxswjgif5l85vak8xjkfwsq7q"; depends=[png tiff]; }; ThomasJeffersonUniv = derive2 { name="ThomasJeffersonUniv"; version="0.1.0"; sha256="0w2n7jwns82zljkfz509hkkplda5mpbcqk5gzi2y75vlika0rg18"; depends=[lubridate timeDate zoo]; }; - ThreeArmedTrials = derive2 { name="ThreeArmedTrials"; version="1.0-3"; sha256="06jhgl1fzvkvnhrjs4xcyw6yymwl499rw9xnfwpx44dzxi7nynxj"; depends=[MASS numDeriv]; }; ThreeGroups = derive2 { name="ThreeGroups"; version="0.21"; sha256="0hipxa45v9ysb2qbk33kjycnvqar7bff1ajxd6fzhpc3jc9hflw4"; depends=[]; }; ThreeWay = derive2 { name="ThreeWay"; version="1.1.3"; sha256="17yl8zq029wiy3c0f4ssljx85dnm9n862wj2d24w7p0lxlvarmz6"; depends=[]; }; ThreeWiseMonkeys = derive2 { name="ThreeWiseMonkeys"; version="0.1.0"; sha256="1qdb3m15q0gg8dk2znc2syy2jdqsp2893a7ilfa8rg3r2vps86yg"; depends=[stringr tuneR]; }; Thresher = derive2 { name="Thresher"; version="1.1.3"; sha256="16zf5cwc2c5j61xcrqsycwrsc162spyqgk9mac7n37mymn5agbwp"; depends=[ade4 ClassDiscovery colorspace MASS movMF oompaBase PCDimension]; }; ThresholdROC = derive2 { name="ThresholdROC"; version="2.9.0"; sha256="1mzz05aqq6crcfm5bbv0gbpvndk0yy1lf4fxz8zva790g16cilq0"; depends=[ks MASS numDeriv pROC]; }; - ThresholdROCsurvival = derive2 { name="ThresholdROCsurvival"; version="1.0.2"; sha256="1mk2ijh86y065z8y9p255dj09s0nh2h7i33d0z9ww81g6wxbvagy"; depends=[boot InformativeCensoring pROC psych survival survivalROC ThresholdROC]; }; + ThresholdROCsurvival = derive2 { name="ThresholdROCsurvival"; version="1.0.3"; sha256="19xgyrdnwfv4rqvrj7d2603jy0wvi5r17l85lvvv0z56pdcqagl3"; depends=[boot InformativeCensoring pROC psych survival ThresholdROC]; }; TiPS = derive2 { name="TiPS"; version="1.2.1"; sha256="0crni6cam3dwpjrgmr0bmp2czmbycg05sl585ldn4cg38c4dppwh"; depends=[gtools inline Rcpp stringr]; }; TideCurves = derive2 { name="TideCurves"; version="0.0.5"; sha256="1cnfnmwmlicsi243058zq3302niwk2l1agrrjy4k7rf1v7gfy6xx"; depends=[chron data_table fields]; }; TideHarmonics = derive2 { name="TideHarmonics"; version="0.1-1"; sha256="1g1v99gh6mns4l8ipmw7kpalbk07m92ybcqjq7b0wsjmdvs1y67s"; depends=[]; }; TideTables = derive2 { name="TideTables"; version="0.0.3"; sha256="0xfwikz9f58pw1j5vp45wp44lbr8b8ijlac474nzahq46d411afp"; depends=[chron data_table]; }; Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; }; TidyConsultant = derive2 { name="TidyConsultant"; version="0.1.0"; sha256="1ipv0nx0xmba62c7qjgadpjsr850d9dl0z5zjkh1rj6kfxdgiis2"; depends=[autostats badger framecleaner pacman presenter tidybins validata]; }; - TidyDensity = derive2 { name="TidyDensity"; version="1.2.3"; sha256="0fryb0icgf3vfzcs4qzwkl58rp6a53caq2bq719abk7ya57zd1gw"; depends=[actuar broom data_table dplyr ggplot2 magrittr nloptr patchwork plotly purrr rlang stringr survival tidyr tidyselect]; }; + TidyDensity = derive2 { name="TidyDensity"; version="1.2.4"; sha256="1dv035cj40817aya10vl8g9ij8wdxzxy2r2r3kfz44jhhynfr2hb"; depends=[actuar broom data_table dplyr ggplot2 magrittr nloptr patchwork plotly purrr rlang survival tidyr tidyselect]; }; TidyMultiqc = derive2 { name="TidyMultiqc"; version="1.0.3"; sha256="1gnkq2ssc9lvkz1j52c2l4v1frxfcnw3j186kf3xbx8qx1aikyqr"; depends=[assertthat dplyr jsonlite magrittr purrr rlang stringr tibble]; }; - TileManager = derive2 { name="TileManager"; version="0.4.1"; sha256="0pcskdqxxm07j47bw1j4d3jqf64pk0jqwcp5379hnpi6kr7f5gvh"; depends=[APfun raster rgeos sp XML]; }; TimeSeries_OBeu = derive2 { name="TimeSeries.OBeu"; version="1.2.4"; sha256="0ihigrbdkfbqqjxqfx3y5q8ii8n60301s7190jr50a88l1xzgmh8"; depends=[forecast jsonlite locfit trend tseries]; }; TimeVTree = derive2 { name="TimeVTree"; version="0.3.1"; sha256="124kg9zcq4b2j4qvg9f6gykbmzf69qjnnw54nv213ip2h4rdkv32"; depends=[survival]; }; TimeVarConcurrentModel = derive2 { name="TimeVarConcurrentModel"; version="1.0"; sha256="0fq05yni8hasivwmv5dk5ivwkprh4fkaa7h1bv8b60savvh0zs23"; depends=[Bolstad2 fda]; }; @@ -5291,19 +5304,18 @@ in with self; { TotalCopheneticIndex = derive2 { name="TotalCopheneticIndex"; version="2.0.1"; sha256="0i21g7zzad973802kfp8s638d3g70c4vkrm59i9frb71apvkljk2"; depends=[TreeTools]; }; TouRnament = derive2 { name="TouRnament"; version="0.2.5"; sha256="09i0frzzxi5ymjlvh81rmisxh35amrvhxbkjq5351fhlpf1n977z"; depends=[]; }; ToxCrit = derive2 { name="ToxCrit"; version="1.0"; sha256="1jxi10b733k3djfykyqnpcp2fapsmaszsd7lkwcwmwq62v73rhax"; depends=[]; }; - ToxicR = derive2 { name="ToxicR"; version="22.8.1.0.3"; sha256="0sc7i3jzqhjwhcz83p7vgjmlpz4f27k0phbi2q5c8gxcnkzbffwp"; depends=[coda doBy dplyr forcats ggplot2 ggridges multcomp Rcpp RcppEigen RcppGSL scales shiny tidyverse]; }; - Tplyr = derive2 { name="Tplyr"; version="1.0.1"; sha256="10kai38z0mxm7s6x1vjl2vgvwwkz2lzy04irvxxink5xfs8dqkpd"; depends=[assertthat dplyr forcats lifecycle magrittr purrr rlang stringr tibble tidyr tidyselect]; }; - TraMineR = derive2 { name="TraMineR"; version="2.2-5"; sha256="0xjyfqac96nf9zrbc5v03253lzyqvzib7j1j27nrxsslkq7dwpk5"; depends=[boot cluster colorspace RColorBrewer vegan]; }; + Tplyr = derive2 { name="Tplyr"; version="1.0.2"; sha256="1wnhw2y6pl6i3syg7qrl16k9gids6qr7sp2z6b88vphz7p9jqi9p"; depends=[assertthat dplyr forcats lifecycle magrittr purrr rlang stringr tibble tidyr tidyselect]; }; + TraMineR = derive2 { name="TraMineR"; version="2.2-6"; sha256="1rqkhfns0i1nfjs6kdvpvjzy6zwiclxhhiscr4zmp4mzj9b5pxp7"; depends=[boot cluster colorspace RColorBrewer vegan]; }; TraMineRextras = derive2 { name="TraMineRextras"; version="0.6.5"; sha256="0y1f296l5fjdiidiyk50vgnn2srzvb6x2ddizay9yv4lichxy4w1"; depends=[cluster colorspace doParallel foreach RColorBrewer survival TraMineR]; }; TraceAssist = derive2 { name="TraceAssist"; version="0.1.0"; sha256="03x071nsfgz1z2qp1zn1y3hfx8ydpj0z4rcfk2i588ad53z86w4c"; depends=[glmnet keras Matrix quadprog]; }; TrackReconstruction = derive2 { name="TrackReconstruction"; version="1.3"; sha256="0x2wydp9qj2r2rsv0kmwlq4y7mr391ya13rpnj3mdgl0pjdp445s"; depends=[fields RColorBrewer]; }; Trading = derive2 { name="Trading"; version="2.5"; sha256="0k048pn06qc1kvz0bj3bgfvaf3nqw6flqn4kvxj6vxhzlz3km9qs"; depends=[data_table PerformanceAnalytics reticulate]; }; - TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.1"; sha256="03cr1cmiygi0kq37zs8dnp1rd670yzd4z1wgj31ahnld1siqb30g"; depends=[caret data_table DescriptiveStats_OBeu dplyr lubridate RCurl zoo]; }; TraitStats = derive2 { name="TraitStats"; version="1.0.2"; sha256="07jiipxkidr0hnb3lbbb8yj007m5qzcbq9p5py276sckalamzri0"; depends=[gridExtra lattice qpdf rlist]; }; TrajDataMining = derive2 { name="TrajDataMining"; version="0.1.6"; sha256="1n5qcyc1kb8rdrqaji7pp63l2gyr6jim8spm8ydb4lnqfcnrin9g"; depends=[geosphere rgdal RPostgreSQL sp spacetime trajectories xts]; }; TransModel = derive2 { name="TransModel"; version="2.3"; sha256="1wyg3cn7wp1jird16n88ygikf7qpqv3xhnyj3sv4l7gmwvjp5v5a"; depends=[MASS survival]; }; TransP = derive2 { name="TransP"; version="0.1"; sha256="0p6pfcp8qjdah0lfhx0a396nxjzp3ckpda9hl3snpppx79iyww55"; depends=[]; }; TransPhylo = derive2 { name="TransPhylo"; version="1.4.5"; sha256="0g92kwi1nlmpc8m4pc9kv9xhczryr2kn9icfr3js7da7vy8g50xy"; depends=[ape Rcpp]; }; + TransTGGM = derive2 { name="TransTGGM"; version="1.0.0"; sha256="0c815qp0nb4c8ymq9gm9yr37vkzlb6fja9j0czl6ww7rvr8fplrn"; depends=[doParallel expm glasso MASS Matrix rTensor Tlasso]; }; Tratamentos_ad = derive2 { name="Tratamentos.ad"; version="0.2.4"; sha256="15xba5g5b9rxpndgmhlnnq35xjic9v7ymgpyaaj6fn0kziphip84"; depends=[crayon]; }; TreatmentSelection = derive2 { name="TreatmentSelection"; version="2.1.1"; sha256="1pw64hx697jg2f1r2zd8y98g3ivj2gm8fnixcjfn4drsd0xixb4p"; depends=[binom ggplot2 survival]; }; TreeBUGS = derive2 { name="TreeBUGS"; version="1.4.9"; sha256="1jr3xjdb909rlc698swpi5znmam2v73mp717vfg157df36930yj8"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; @@ -5314,7 +5326,7 @@ in with self; { TreeSearch = derive2 { name="TreeSearch"; version="1.2.0"; sha256="1fl399p3bv5f8vlbzhq3sxc40vi4hfa6jn3cgpy2qv79jggfpzh1"; depends=[ape cli cluster fastmatch future promises protoclust Rcpp Rdpack Rogue shiny shinyjs TreeDist TreeTools]; }; TreeSim = derive2 { name="TreeSim"; version="2.4"; sha256="0nmzx2723n1f5lr951zz2ih2gnpfim5qzihlayhpf181z1qijv93"; depends=[ape geiger]; }; TreeSimGM = derive2 { name="TreeSimGM"; version="2.5"; sha256="125c9rim272h0dfyygmmijz8dcnch3g9wy1ngki77dyrmdl77yfx"; depends=[ape TreeSim]; }; - TreeTools = derive2 { name="TreeTools"; version="1.8.0"; sha256="1gi8k60paliid6jlbagw14j3873rfrn0p22i52lskxq6dhhm4clh"; depends=[ape bit64 colorspace fastmatch lifecycle R_cache Rcpp Rdpack]; }; + TreeTools = derive2 { name="TreeTools"; version="1.9.0"; sha256="05h9l71mg1b9wx4w9ls25qm3agx9rp6hs0rkn6aqyll9js8mcfh7"; depends=[ape bit64 colorspace fastmatch lifecycle R_cache Rcpp Rdpack]; }; TrenchR = derive2 { name="TrenchR"; version="0.1.1"; sha256="03w010s3zxbrn7nh439d5mg1670k2hylci28i74q39b9235xn8vz"; depends=[deSolve msm Rdpack zoo]; }; TrendInTrend = derive2 { name="TrendInTrend"; version="1.1.3"; sha256="0ijkijyhxhjc7202qssa9wnrmwgv4miv5n8jbml4qqj80kcsbdwp"; depends=[nleqslv pracma pROC rms]; }; TrendSLR = derive2 { name="TrendSLR"; version="1.0"; sha256="1x8j2dg3m7b22gva33y4s318a41wl60sz93y868z4j65hp13jb5k"; depends=[changepoint forecast imputeTS plyr Rssa tseries zoo]; }; @@ -5348,7 +5360,7 @@ in with self; { UBCRM = derive2 { name="UBCRM"; version="1.0.2"; sha256="0cfdgarlks0hkx4fnlm0i2fwpl057vxq58n3xfv718w3cs2nx9wc"; depends=[]; }; UBL = derive2 { name="UBL"; version="0.0.7"; sha256="1zppc8mgmj4ymxfdvhqiirlf80wh65y58wqm92fgjdn7s06v5skf"; depends=[automap gstat MBA randomForest sp]; }; UCR_ColumnNames = derive2 { name="UCR.ColumnNames"; version="0.1.0"; sha256="1nwwq93f60r9aik51l7mzckg81f81nz5kgzynyzp5sm4y2wmpzwn"; depends=[]; }; - UCSCXenaShiny = derive2 { name="UCSCXenaShiny"; version="1.1.8"; sha256="0am18hxmcr671pzpms2x6gyndnd8h0dsq72v28ik6c2fjh2wz5x1"; depends=[dplyr ezcox forcats ggplot2 ggpubr magrittr ppcor psych purrr shiny stringr tibble tidyr UCSCXenaTools]; }; + UCSCXenaShiny = derive2 { name="UCSCXenaShiny"; version="1.1.9"; sha256="0bqj6vbhjn2wgq2486qyfl8wfsgz1gd0kwxrvjxp8fvx96nsrx1l"; depends=[dplyr ezcox forcats ggplot2 ggpubr magrittr ppcor psych purrr shiny stringr tibble tidyr UCSCXenaTools]; }; UCSCXenaTools = derive2 { name="UCSCXenaTools"; version="1.4.8"; sha256="0w0rps6jsiw67k6h8j1g0nqzwwhl1kb2by90xd4w61i71vk0fda7"; depends=[digest dplyr httr jsonlite magrittr readr rlang]; }; UComp = derive2 { name="UComp"; version="2.2.3"; sha256="11vhkpz1nvqfldksaa8rdhpn0f05x4h2dfpaabr0w274rwad93ap"; depends=[Rcpp RcppArmadillo]; }; UKB_COVID19 = derive2 { name="UKB.COVID19"; version="0.1.3"; sha256="053hsdaa7xnzk95bdp0i1jr6pzq50zvfn1m5sm0znsrk59m5xhgm"; depends=[data_table dplyr here magrittr questionr tidyverse]; }; @@ -5387,9 +5399,10 @@ in with self; { UpSetVP = derive2 { name="UpSetVP"; version="1.0.0"; sha256="1v6djfwaix978vzfjnj0vd3r0m3svfqkn9aqnf9qz2xsjk43m9zr"; depends=[ggplot2 patchwork rdacca_hp]; }; UsingR = derive2 { name="UsingR"; version="2.0-7"; sha256="17ljllslhfmi80yj1336lx9pmzy2i8zdb6byky5yay1lry7s1g30"; depends=[HistData Hmisc MASS]; }; UtilityFrailtyPH12 = derive2 { name="UtilityFrailtyPH12"; version="1.0"; sha256="06f5gmwwk1r14ab6v5jcxz0pmdph7ffi4y57mjg9byn7pjnibflk"; depends=[bindata mvtnorm Phase123 Rcpp RcppArmadillo]; }; - V8 = derive2 { name="V8"; version="4.2.1"; sha256="1w1zihmhrygn2i674wimbv7xqjnwlld4x3ndvh5dl4cdg7s1m24r"; depends=[curl jsonlite Rcpp]; }; + V8 = derive2 { name="V8"; version="4.2.2"; sha256="0friwpw3cbg40hfsqnlp8g3a6l4zhfag6lh005ya6dw634kkarah"; depends=[curl jsonlite Rcpp]; }; VAJointSurv = derive2 { name="VAJointSurv"; version="0.1.0"; sha256="19ib4b1kf1zg4l571f2asxkwbab44pzs954agj0wx1p6kb2v608q"; depends=[lme4 Matrix psqn Rcpp RcppArmadillo RcppEigen SimSurvNMarker survival testthat]; }; VALERIE = derive2 { name="VALERIE"; version="1.1.0"; sha256="15z8234jhh7hv3gijrvy8hap6gdgvm6qll9b00qbji7vyc3dg4pg"; depends=[GenomicAlignments GenomicRanges ggplot2 ggplotify ggpubr IRanges pheatmap plyr Rsamtools scales]; }; + VALIDICLUST = derive2 { name="VALIDICLUST"; version="0.1.0"; sha256="1glcvzrbc7glxmbmas3zzb114a5cfl7gsf7xlxaifrrgvcahrvnx"; depends=[diptest dplyr]; }; VAM = derive2 { name="VAM"; version="1.0.0"; sha256="04lq8i4zwdc9a4n4hvabdyv4a4cmmqbf534cdnnck7jc0dk5rphr"; depends=[MASS Matrix]; }; VAR_etp = derive2 { name="VAR.etp"; version="1.0"; sha256="0pm2m1wwsyrfwvqibf4mn6wbnslynvb1964i79iqhy5qp4nflajp"; depends=[]; }; VARDetect = derive2 { name="VARDetect"; version="0.1.6"; sha256="1yrlyg4b53bdmfjcqi07l0gr3f01h8jwj6g6av3plyk96cvl4svb"; depends=[igraph lattice MTS mvtnorm pracma Rcpp RcppArmadillo sparsevar]; }; @@ -5406,7 +5419,7 @@ in with self; { VDSPCalibration = derive2 { name="VDSPCalibration"; version="1.0"; sha256="1hrmmhvk3mhd3bdl0msnm5shcj4cjgd3pn1rkfkv8fh4llqvz7w8"; depends=[]; }; VEwaning = derive2 { name="VEwaning"; version="1.2"; sha256="1438j8dlfmn2yacg1haa66fmmv11x49b38qyl03jvw9vcxi1gz4x"; depends=[ggplot2 survival]; }; VEwaningVariant = derive2 { name="VEwaningVariant"; version="1.3"; sha256="1w0d7z86gg16vjg3bd9flr53q02wjz5hzs0460hx167ixi13m5jv"; depends=[ggplot2 Rcpp RcppArmadillo survival]; }; - VFP = derive2 { name="VFP"; version="1.4"; sha256="0p964fag5a0p23x6jgyc5bx4kp3ar9jdh88n4nybiv884sdfbk90"; depends=[gnm MASS VCA]; }; + VFP = derive2 { name="VFP"; version="1.4.1"; sha256="14idww1vy695mp9v2h0nxqi6flmm41cr30i0yd2nwjsnriwqgzak"; depends=[gnm MASS VCA]; }; VFS = derive2 { name="VFS"; version="1.0.2"; sha256="1b8sl8id2gj4iqkpjzd3giybbix2jvskwsbw1kqj3zqr77hygxwg"; depends=[e1071 nleqslv]; }; VGAM = derive2 { name="VGAM"; version="1.1-7"; sha256="0zkmj7crkkvi7ki88f6vfn7x8gf0ycrbg13wann7wirj4cwjvid4"; depends=[]; }; VGAMdata = derive2 { name="VGAMdata"; version="1.1-6"; sha256="14s8118k66yy0dljr364dbq1hrvjwmg69n3ls3dbmxfm1f9vrmnw"; depends=[VGAM]; }; @@ -5416,6 +5429,7 @@ in with self; { VIFCP = derive2 { name="VIFCP"; version="1.2"; sha256="0w41k25vss806m5vpwmmcfsmwaixmln0pliql3a6xlwsihha5i34"; depends=[]; }; VIGoR = derive2 { name="VIGoR"; version="1.1.1"; sha256="1dpl9y86i8hcrbyvgfkix4vpg5rsz5y6g8m73jl8kzpi686r9ikv"; depends=[]; }; VIM = derive2 { name="VIM"; version="6.2.2"; sha256="1r0myxcx8y1a3fkf9ssk882f09snn2j6zilsygpld32hahn4k9xg"; depends=[car colorspace data_table e1071 laeken magrittr MASS nnet ranger Rcpp robustbase sp vcd]; }; + VIMean = derive2 { name="VIMean"; version="0.1.0"; sha256="0kxrcigp94h2j1vx5pj24sp73iqxldc1ygm5bak4jrld66r0nb5b"; depends=[]; }; VIRF = derive2 { name="VIRF"; version="0.1.0"; sha256="0bdkmbmkmmj78h9x025qsdzjzcx8xr2s98wlspcsghlz4hxkzcas"; depends=[BigVAR expm gnm ks matlib matrixcalc mgarchBEKK rmgarch]; }; VLF = derive2 { name="VLF"; version="1.1"; sha256="096a7nx60qm4b7fil4s3r4mlp8fq60v0lq893jh3ij6gm63mfcim"; depends=[]; }; VLMC = derive2 { name="VLMC"; version="1.4-3-1"; sha256="0cwfpxcj8g68j9z9fl66i0amj8ypf199iv3yyxzsmniqv4w5x4ar"; depends=[MASS]; }; @@ -5424,6 +5438,7 @@ in with self; { VMDecomp = derive2 { name="VMDecomp"; version="1.0.1"; sha256="0iq2lj7n77qmryf95cjl2y869bhy6i0mx44qls7xc07g0qplwqx3"; depends=[data_table glue Rcpp RcppArmadillo]; }; VOSONDash = derive2 { name="VOSONDash"; version="0.5.7"; sha256="1qivx5ddl9jsn6q6ic2w8jrczxlx23z087k5arfz2rixgj7rndyg"; depends=[data_table httpuv httr igraph lattice magrittr RColorBrewer shiny SnowballC systemfonts syuzhet textutils tm vosonSML wordcloud]; }; VPdtw = derive2 { name="VPdtw"; version="2.1-14"; sha256="1pr8jrd7ymgf46h2gbvanqjrvpc4xs39sk86vvxhawzf3w31g257"; depends=[]; }; + VSOLassoBag = derive2 { name="VSOLassoBag"; version="0.99.0"; sha256="1pp1rycxfzg3cif73q5z6c06ln6h31b24mxgbh48nhirjgp8b6g1"; depends=[ggplot2 glmnet pbapply POT SummarizedExperiment survival]; }; VSURF = derive2 { name="VSURF"; version="1.1.0"; sha256="1azfd4sb89mp27l86k293qj81x94gfiy1ihwnb6c558p8h69xsgf"; depends=[doParallel foreach randomForest ranger Rborist rpart]; }; VSdecomp = derive2 { name="VSdecomp"; version="0.1.1"; sha256="1vx68rhsxvi3kkrwr98hqhivhdmb9dm9rnmgspx74dskhkysjwbg"; depends=[ggplot2 Hmisc lfe reshape rlang]; }; VTShiny = derive2 { name="VTShiny"; version="0.1.0"; sha256="1zq6irla3q7hqs8jpjdya7vy3frqrj72rwmd1sgxwrkgpmpxw6x7"; depends=[EnvStats rmarkdown shiny]; }; @@ -5442,7 +5457,7 @@ in with self; { VennDiagram = derive2 { name="VennDiagram"; version="1.7.3"; sha256="0ilcxcp8qskmb5cp7fyb7i0qizg42lrx0ny8ws3if90kfrglghp7"; depends=[futile_logger]; }; VertexSimilarity = derive2 { name="VertexSimilarity"; version="0.1"; sha256="0f638y272dbmz5747wxqy9pxasxk3a9f9wf31gf297qx7268ab1m"; depends=[igraph]; }; VertexSort = derive2 { name="VertexSort"; version="0.1-1"; sha256="0n9m5l85ylin6756rsksak94nv0626qd7czhhj6plz4nfrr27sgl"; depends=[igraph snowfall]; }; - VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.1.8"; sha256="0yvm3kkc7ssk85ripdgbxj8gazqb1dfswgjy63c3gb135zi2cbqk"; depends=[Rcpp]; }; + VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.1.9"; sha256="08gpsi6vrink2dd1ngwbhi8yxrasgh0xi5klc64v7ig49hky9wma"; depends=[Rcpp]; }; VetResearchLMM = derive2 { name="VetResearchLMM"; version="1.0.0"; sha256="1a7wm04bsr5shak7l8ypxlhlnx3qkq1jdpjnji1n05p6b00ih9h1"; depends=[ggplot2 lme4 lmerTest multcomp nlme]; }; ViSiElse = derive2 { name="ViSiElse"; version="1.2.2"; sha256="1ay09dahlqnfrgf4gl4s45a4ahrk2xliagxqz5h826w2vzsawqcc"; depends=[chron colorspace ggplot2 Matrix reshape2 stringr]; }; VicmapR = derive2 { name="VicmapR"; version="0.1.9"; sha256="0c1mmnng0i7lzgp745h59w34fl94pl5cwsz65wy7pm2sy5p80mjb"; depends=[cli curl DBI dbplyr dplyr glue httr kableExtra knitr leaflet lubridate magrittr mapview purrr rlang rvest sf xml2]; }; @@ -5451,7 +5466,7 @@ in with self; { VirtualPop = derive2 { name="VirtualPop"; version="1.0.2"; sha256="0g3yzv9fqmxydqq6b56l6abz03slk7425aahixs3q26gwp587rz4"; depends=[HMDHFDplus msm]; }; VisitorCounts = derive2 { name="VisitorCounts"; version="1.0.1"; sha256="155ibah6qg5xdyp8vnpwgv0clqhr6ys3310dd9sipawz0730kcgw"; depends=[Rssa]; }; Visualize_CRAN_Downloads = derive2 { name="Visualize.CRAN.Downloads"; version="1.0.1"; sha256="0z2v2izn4aj3i6f5gh8r7pkrqpbb82bv9v4s4vqxgm066a51m4p2"; depends=[cranlogs htmlwidgets plotly]; }; - VisualizeSimon2Stage = derive2 { name="VisualizeSimon2Stage"; version="0.1.0"; sha256="19x4x6liv6782pxc9ai82m4g2z5xv9m5d3snl7k7vfnpqia71rh1"; depends=[ggplot2]; }; + VisualizeSimon2Stage = derive2 { name="VisualizeSimon2Stage"; version="0.1.1"; sha256="1xb001jdhf0z96zg51pkg9jng4nb4f7asqip7s5kx46fmzd1343s"; depends=[ggplot2]; }; VorteksExport = derive2 { name="VorteksExport"; version="0.1.8"; sha256="0r9wmd9bdarjkqmpwp85xz27nbyhjkcpxm8qb8bqjmxq4nds6nxx"; depends=[]; }; Voss = derive2 { name="Voss"; version="0.1.5"; sha256="00f3ljm85z8gr1qyc6nj9g35ywzm78khy8r82wb5ys8fx68n0vwl"; depends=[fields]; }; VoxR = derive2 { name="VoxR"; version="1.0.0"; sha256="16r9ggc5x889g8rjqvp1q2kgf5asjzhykd1ldjy3ny9m48p501ad"; depends=[circular data_table dplyr fastcluster FNN geometry raster Rfast rgl]; }; @@ -5535,7 +5550,7 @@ in with self; { XKCDdata = derive2 { name="XKCDdata"; version="0.1.0"; sha256="1lx9frlbc549qrh4d3m79r3l9icfzqkgfgp8raa8x46a2havi0a5"; depends=[assertthat dplyr glue htmltools httr jsonlite magrittr tibble]; }; XLConnect = derive2 { name="XLConnect"; version="1.0.6"; sha256="1yd4mbsa6y69lfyx78lda5a65jj6zahxi2yjbn6vfr0l9pvvjcxj"; depends=[rJava]; }; XLS = derive2 { name="XLS"; version="0.1.0"; sha256="0a4jbfz9x9rn4k5v7qh3r9p7pal4piqg01469237lkq00m3lijy5"; depends=[mpoly]; }; - XML = derive2 { name="XML"; version="3.99-0.12"; sha256="053dlc1762qjqmqiq0sb9qnrpg8rx1a8inizq1fl1gw6r0jr886b"; depends=[]; }; + XML = derive2 { name="XML"; version="3.99-0.13"; sha256="0fppx0jnqxx3l7y8ivb56sq0fjcqv3fn226i4s03mi7hwak6iic5"; depends=[]; }; XML2R = derive2 { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; }; XNomial = derive2 { name="XNomial"; version="1.0.4"; sha256="1mwx302576rmsjllbq2clfxilm3hkyp5bw0wmwqbn0kgv5wpy8z6"; depends=[]; }; XR = derive2 { name="XR"; version="0.7.2"; sha256="0j8rkjw9y7mb0yj24nlisfd84148pnnakz8i2y35y2b8gmh5zhvz"; depends=[jsonlite]; }; @@ -5556,12 +5571,13 @@ in with self; { Z10 = derive2 { name="Z10"; version="0.1.0"; sha256="02kxlzplmss68zj1z97fvpcjyhhpic9hlx8f5j3gqn3m1mqm1dja"; depends=[dplyr lubridate magrittr rjson stringr]; }; ZIBseq = derive2 { name="ZIBseq"; version="1.2"; sha256="13rjy4jl9wil6hhpra4qmdis0iyqxchzsf9l7q6r0dz1f7dpd2nq"; depends=[gamlss gamlss_dist nlme]; }; ZIM = derive2 { name="ZIM"; version="1.1.0"; sha256="0scyfjn4ilsvha3x41c3b8bcfi31hlhwm77wn2a8hj5dsvnnmzig"; depends=[MASS]; }; + ZINAR1 = derive2 { name="ZINAR1"; version="0.1.0"; sha256="1didfjb4215k9q82n1vaqln6f7fszsycsflydak2zl7xwficwhy6"; depends=[gamlss_dist gtools MASS scales statmod VGAM]; }; ZINARp = derive2 { name="ZINARp"; version="0.1.0"; sha256="1s5nvxcc7nw2kz90i7fqw5fi2qzzbsm5ppn92695v44q38h8jw9s"; depends=[progress]; }; ZIPBayes = derive2 { name="ZIPBayes"; version="1.0.2"; sha256="0j56smgf44fki70jc6aypksbl70pyppc6s3xv82yrq5rndym077k"; depends=[MASS Rcpp]; }; ZIPFA = derive2 { name="ZIPFA"; version="0.8.1"; sha256="134pkdn4slhiv27rdkkmh2z7xch30ns0jhzxgd7r05bky0z1iri1"; depends=[doParallel foreach Matrix optimx trustOptim]; }; ZIprop = derive2 { name="ZIprop"; version="0.1.1"; sha256="1gvf6z7mx543a0hiqcknwhkplqa3mfmw3swi8n9vma10bqmgysx7"; depends=[data_table purrr rgenoud]; }; ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; - ZVCV = derive2 { name="ZVCV"; version="2.1.1"; sha256="0gc76j9i8fkm2v638nyzzb1qxl4zmapbspkkaffb8gi5qyjja448"; depends=[abind BH dplyr glmnet magrittr mvtnorm Rcpp RcppArmadillo Rlinsolve]; }; + ZVCV = derive2 { name="ZVCV"; version="2.1.2"; sha256="0ws0v7i6r7skb8lv6j718k29v5qsy1b007jxidv81iv0jcz9zfpy"; depends=[abind BH dplyr glmnet magrittr mvtnorm Rcpp RcppArmadillo Rlinsolve]; }; ZeBook = derive2 { name="ZeBook"; version="1.1"; sha256="0v98kbz9njjdx60x9dn8hl8mc6x19i5knjyg2gkwfd667yy1rkl6"; depends=[deSolve triangle]; }; ZetaSuite = derive2 { name="ZetaSuite"; version="1.0.1"; sha256="10b0acz88vc80x49wwv581abym75wswi4z92mnl4xn0vw62vjpqa"; depends=[dplyr e1071 ggplot2 gridExtra mixtools RColorBrewer reshape2 Rtsne]; }; ZillowR = derive2 { name="ZillowR"; version="1.0.0"; sha256="1q0hdm654p6vkmajwrhx18ifm9sc4czdfd7cabhkqdky4p07c89r"; depends=[RCurl XML]; }; @@ -5586,11 +5602,11 @@ in with self; { abclass = derive2 { name="abclass"; version="0.4.0"; sha256="1cg8xfzxya585wzk6y2kf4flgjxlspzqqqksbig8nlxmwxxj413p"; depends=[Rcpp RcppArmadillo]; }; abcrf = derive2 { name="abcrf"; version="1.9"; sha256="08mh1a6gxp0mfx6qnp1qzcrfx7xp64qj9kad4ziyswfx22ykdsxi"; depends=[doParallel foreach MASS matrixStats ranger Rcpp RcppArmadillo readr stringr]; }; abcrlda = derive2 { name="abcrlda"; version="1.0.3"; sha256="04pcdnk2szfpc2ylcw5ds7y895ivy03bycal03kxw7cwylzxasks"; depends=[]; }; - abctools = derive2 { name="abctools"; version="1.1.3"; sha256="07s9dg10i8lsxl73b4n2hynca2fjgb0ykb0dz8c3zv6cgw3cyx97"; depends=[abc abind Hmisc plyr]; }; + abctools = derive2 { name="abctools"; version="1.1.4"; sha256="02c473fqj7yd27flma2x7flqzqbrnba2xfcjy466nww0sm1vvhjg"; depends=[abc abind Hmisc plyr]; }; abd = derive2 { name="abd"; version="0.2-8"; sha256="191gspqzdv573vaw624ri0f5cm6v4j524bjs74d4a1hn3kn6r9b7"; depends=[lattice mosaic nlme]; }; abdiv = derive2 { name="abdiv"; version="0.2.0"; sha256="053l94br8sdy30078ssncq5i5zvdxa3m72ymbwbh0cm3zmsljj29"; depends=[ape]; }; abe = derive2 { name="abe"; version="3.0.1"; sha256="1f19h3xzzmjhvwc1rrb8z0rai3ip03y4gdi2gg9bfr5sg2nfklk6"; depends=[]; }; - abess = derive2 { name="abess"; version="0.4.5"; sha256="0lv9cggbc33xpc3h6a8nsa72r7217lb4qzwvxmy7kg4f6ny1r0rs"; depends=[MASS Matrix Rcpp RcppEigen]; }; + abess = derive2 { name="abess"; version="0.4.6"; sha256="08dyhn8a5lnizlyj33i1fr4mh52yzcnla4q9sanfg17705vvjk6m"; depends=[MASS Matrix Rcpp RcppEigen]; }; abglasso = derive2 { name="abglasso"; version="0.1.1"; sha256="0h8p912l0202wyr5vjsbzw5mr70m56ab39wv833g6c4c3187479y"; depends=[MASS pracma statmod]; }; abind = derive2 { name="abind"; version="1.4-5"; sha256="0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis"; depends=[]; }; abjData = derive2 { name="abjData"; version="1.1.2"; sha256="0q7l9lxm41pjkdv98axx87wcxjxfyccfwi2k1b29g07pfjszs0hv"; depends=[]; }; @@ -5634,7 +5650,7 @@ in with self; { act = derive2 { name="act"; version="1.1.9"; sha256="094sm7afkjrgyhc1p7wj7akrlm65fxwkljgnlldq0z2bf2df07ab"; depends=[openxlsx progress stringi stringr textutils XML xml2]; }; actel = derive2 { name="actel"; version="1.2.1"; sha256="10gv6vc921ma6ckck9807j3j7z0m8kalwv5aj8xg6i2yqnia2zgs"; depends=[circular data_table DiagrammeR DiagrammeRsvg fasttime ggplot2 knitr readr reshape2 rmarkdown rsvg scales stringi stringr svglite]; }; actilifecounts = derive2 { name="actilifecounts"; version="1.1.0"; sha256="1v423byxanbvqk3s76s67r6ivqcg3ld4yddcvf7cmwwlrkd72ck4"; depends=[gsignal pracma]; }; - activAnalyzer = derive2 { name="activAnalyzer"; version="1.0.5"; sha256="1xy98lrlq9rn3v5699jw031wka4fyd7gydgxd5897amnc9in9z31"; depends=[dbplyr dplyr flextable forcats ggplot2 golem hms lubridate magrittr modelr patchwork PhysicalActivity reactable rmarkdown RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs stringr tidyr zoo]; }; + activAnalyzer = derive2 { name="activAnalyzer"; version="1.1.0"; sha256="1fmh7jyvxlik229g136qvd1flzgklv8yn1i60lvngw29zkw95cvn"; depends=[dbplyr dplyr flextable forcats ggplot2 golem hms lubridate magrittr modelr patchwork PhysicalActivity reactable rmarkdown RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs stringr tidyr zoo]; }; activPAL = derive2 { name="activPAL"; version="0.1.3"; sha256="1h6hp5z89ji73gdzxy1dgbfwjysiy5lvcqh90xagpb7sa7ahs3na"; depends=[devtools dplyr ggplot2 lubridate magrittr tidyr]; }; activatr = derive2 { name="activatr"; version="0.1.0"; sha256="0c0sn0b5w1k7kgrx8b6vanamlxsr9nqvkwhm0d8imghq8wl90h43"; depends=[dplyr geosphere ggmap glue httr lubridate magrittr rlang tibble timetk xml2]; }; activegp = derive2 { name="activegp"; version="1.1.0"; sha256="1yfib5q649kag45ryyqsbq9lq9yd74rrjjk65a6c9rkfa4f6w8xv"; depends=[hetGP lhs MASS numDeriv Rcpp RcppArmadillo RcppProgress]; }; @@ -5654,11 +5670,12 @@ in with self; { adana = derive2 { name="adana"; version="1.1.0"; sha256="0zi3a17rapc1z074k3yzgjv2b6ba6c9d54b1hm0ivvgfd335981f"; depends=[optimx ROI ROI_plugin_optimx]; }; adapt4pv = derive2 { name="adapt4pv"; version="0.2-2"; sha256="08zgzidw0wmpvhzsn4h8yhzgc45zh16grjp4y8mcc9lhk7pikhy5"; depends=[doParallel foreach glmnet Matrix speedglm xgboost]; }; adaptDiag = derive2 { name="adaptDiag"; version="0.1.0"; sha256="02xpphdhvryc06yji89mn7m2djgkpy19ph4sd52rhfsma7xn6hyf"; depends=[doParallel extraDistr foreach pbmcapply]; }; + adaptIVPT = derive2 { name="adaptIVPT"; version="1.0.0"; sha256="1zjz61zk0q9d1ih3ghzmiz1sxjpdypbx1vl72iw51sqz0nl89n95"; depends=[Rcpp RcppArmadillo RcppProgress rgl]; }; adaptMCMC = derive2 { name="adaptMCMC"; version="1.4"; sha256="0yydliqhkz1y8lm4sb2biikbk8wmcyfqmamhm059843yk46nr6an"; depends=[coda Matrix ramcmc]; }; adaptMT = derive2 { name="adaptMT"; version="1.0.0"; sha256="1yllz1zd4cryf5bj8b2lcrj6zl79yjkllyh9p02ikryy5qmg419b"; depends=[]; }; adaptTest = derive2 { name="adaptTest"; version="1.1"; sha256="1qfhb3c64a5pl23vk7z6a3h46yb69cvzp1bpxnpybhxs42s80l5q"; depends=[lattice]; }; adaptalint = derive2 { name="adaptalint"; version="0.2.4"; sha256="15qdcvnnbgcps8j5k79354wsc9alswijv8lcafg2i3lghaw536yf"; depends=[dplyr lintr purrr]; }; - adaptiveGPCA = derive2 { name="adaptiveGPCA"; version="0.1.2"; sha256="0bb6hw77dfa66b12xyazlp992gwjb1plylixlmq4cv4yjhnl9n5z"; depends=[ape ggplot2 phyloseq shiny]; }; + adaptiveGPCA = derive2 { name="adaptiveGPCA"; version="0.1.3"; sha256="1766b3d9ysa9axfxqwy6gzj0z8hsl34pic6l63nbidqas55vnjqa"; depends=[ape ggplot2 phyloseq shiny]; }; adaptivetau = derive2 { name="adaptivetau"; version="2.2-3"; sha256="1jficl4yidix35q8yqs3pcv813wq3pg4hpw4ah4dprvg95bl7wwx"; depends=[]; }; adaptr = derive2 { name="adaptr"; version="1.1.1"; sha256="0vq3qavydqyd3vyv6jpgig2qrv8lcnbyy81n3k8sbfcf16p7p0ip"; depends=[]; }; adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.2"; sha256="00npcl2js9vj5r3l66cp5d2l807klia581pig1gsyjjq4rvmfa7v"; depends=[coda Matrix MCMCpack mvtnorm spatstat spatstat_geom]; }; @@ -5673,7 +5690,7 @@ in with self; { additiveDEA = derive2 { name="additiveDEA"; version="1.1"; sha256="15nxpdybsda6yhjk23bpafr8v1zdx8332pcxf26k795q3ypjpiy2"; depends=[Benchmarking lpSolveAPI]; }; additivityTests = derive2 { name="additivityTests"; version="1.1-4.1"; sha256="00kzfv86z6kk0gvbz9mg3p6xi5fb8cn74rhslr17rdpd02md0884"; depends=[]; }; addreg = derive2 { name="addreg"; version="3.0"; sha256="13bwmgxylwi02g60j1rr51cr5jvvkl2nvf2lnnhnq46fhvs2ma7s"; depends=[combinat glm2 turboEM]; }; - ade4 = derive2 { name="ade4"; version="1.7-19"; sha256="1vv5y6badksnpjb3bcphhjdzzh6i2grmwnsalcf2cfpr3y412lf8"; depends=[MASS pixmap sp]; }; + ade4 = derive2 { name="ade4"; version="1.7-20"; sha256="0yxd9dgci3rzz807wsb76wis12ipgjv9w86smdyz20jrnn45giyx"; depends=[MASS pixmap sp]; }; ade4TkGUI = derive2 { name="ade4TkGUI"; version="0.3-1"; sha256="1y0f62n8iv002ayd1nyl3bmszw558niwnfzjpvk0a7cbvfdyvwcg"; depends=[ade4 adegraphics lattice]; }; adea = derive2 { name="adea"; version="1.3.1"; sha256="0jvxgqwfga4gsn5jcdklfq2qci3xyvmkdfjappjwf72swb2rkv0n"; depends=[Benchmarking combinat knitr lpSolveAPI rmarkdown]; }; adegenet = derive2 { name="adegenet"; version="2.1.8"; sha256="09ahgz1ddsdn30fmi5kimdcrcnw18ryqpjcixhyp4xz0xwz2rmw0"; depends=[ade4 ape boot dplyr ggplot2 igraph MASS reshape2 seqinr shiny vegan]; }; @@ -5688,20 +5705,21 @@ in with self; { adeptdata = derive2 { name="adeptdata"; version="1.1"; sha256="0wzavbwc1slyr3wh5jkapghpa748rc86pbw5b4gcxki73r08r7j2"; depends=[]; }; adespatial = derive2 { name="adespatial"; version="0.3-20"; sha256="1sv4kc30l226x24s3gvv8dq0p2y33h8vv474bfpm4z08cfah13pq"; depends=[ade4 adegraphics adephylo lattice MASS shiny sp spdep vegan]; }; adfExplorer = derive2 { name="adfExplorer"; version="0.1.6"; sha256="06sk68580i7jg9lk4jj64ns04y4q6amzsh0k7nxhfdib107yajnp"; depends=[]; }; + adformR = derive2 { name="adformR"; version="0.1.0"; sha256="02krkpqsj53j4mprbw25bycbb2xlhcgnglcp0dl24zw44mfxy9n7"; depends=[jsonlite]; }; adheRenceRX = derive2 { name="adheRenceRX"; version="1.0.0"; sha256="19kimj88dmcc8mq3s4l7pph9jz8p57gbjyn0pn5zkrcjdrwncslm"; depends=[anytime dplyr lubridate purrr Rcpp rlang tidyr]; }; adimpro = derive2 { name="adimpro"; version="0.9.3"; sha256="0njw38vcdm02sni193nj10mpv7hiklpamrkjlz5bnhjxx9mvf4cl"; depends=[awsMethods]; }; adiv = derive2 { name="adiv"; version="2.2"; sha256="0qmykswwirhas4rrwb4jaqicjkqsmq6k11718hzk65h3xdnpg6kr"; depends=[ade4 adegraphics ape cluster lpSolve phylobase phytools rgl]; }; adjROC = derive2 { name="adjROC"; version="0.2.0"; sha256="0ipvp7f7asg8pbzbm3rnn8hp20gs3aqispvagddjw1yd39h0zgrk"; depends=[ggplot2 ROCit]; }; adjSURVCI = derive2 { name="adjSURVCI"; version="1.0"; sha256="0nv6m7ds57d0h44d745s0424ssrgn39ihd294dgrzrpmh8gxhq95"; depends=[Rcpp RcppArmadillo survival]; }; adjclust = derive2 { name="adjclust"; version="0.6.6"; sha256="0kin57r12g1cv4pi6br3c71rpjhfvpkysx7jly3wf0ilj6bfs6vk"; depends=[capushe Matrix Rcpp RcppArmadillo sparseMatrixStats]; }; - adjustedCurves = derive2 { name="adjustedCurves"; version="0.9.0"; sha256="1p8zfswd9b98mgffq9znq7npajr7gh0v82faxajxh4mxqfb1rdjk"; depends=[doParallel doRNG dplyr foreach R_utils rlang]; }; + adjustedCurves = derive2 { name="adjustedCurves"; version="0.9.1"; sha256="1mhl4mzw4286kp9khlv2kpfvzhnvwkmdicwc0z7mlqyi46znylib"; depends=[doParallel doRNG dplyr foreach R_utils rlang]; }; adjustedcranlogs = derive2 { name="adjustedcranlogs"; version="0.1.0"; sha256="08apfvpqvnnalx230p4qf5ckrwm1sgzras4zfrysgym5d4map9ci"; depends=[cranlogs dplyr lubridate rvest xml2]; }; adklakedata = derive2 { name="adklakedata"; version="0.6.1"; sha256="1lzj3ib4bgfkq5lq12n47pwc52h7k35xbbwj6brwsgx1gd4fx3x6"; depends=[httr rappdirs]; }; - adlift = derive2 { name="adlift"; version="1.4-3"; sha256="1lj99vm014fglw57qc00wzxbx4kzb4ky5iisqd756dfg3k41wa55"; depends=[EbayesThresh]; }; - admiral = derive2 { name="admiral"; version="0.8.4"; sha256="0d7ikgxyvb14p3g3vjjkqhr5yhm7pa3wfr9mb3ann42lnzn5950b"; depends=[admiraldev assertthat dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; - admiral_test = derive2 { name="admiral.test"; version="0.3.0"; sha256="14b53g951aay1xq9qz1dw07lm00ijd244laabcxmid1ndqyqbjfr"; depends=[]; }; - admiraldev = derive2 { name="admiraldev"; version="0.1.0"; sha256="07lbb0cgadbs0yvn0rm713hm66pwqmzmfryy0h7p6jd6kqmx014a"; depends=[assertthat dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; - admiralonco = derive2 { name="admiralonco"; version="0.1.0"; sha256="17c52zaqw3p9bd4gi93rbam367rldp12xsk1ayl4dyxyamazcksg"; depends=[admiral admiraldev dplyr lubridate magrittr rlang tidyselect]; }; + adlift = derive2 { name="adlift"; version="1.4-4"; sha256="1rxwsmic17kgbhh50m87mh8ag8l6b1n4p96k0qn6mkgqfiqngam5"; depends=[EbayesThresh]; }; + admiral = derive2 { name="admiral"; version="0.9.0"; sha256="1qylcl7s4sh91h18qpj6s9l61pc1c8iy1nmp7qgl1rcb6xhkn49x"; depends=[admiraldev dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; + admiral_test = derive2 { name="admiral.test"; version="0.4.0"; sha256="1abf7zrqj2bia784rvl3y4awyi3vpaj57lqyak2zpxiykhs8fg4s"; depends=[]; }; + admiraldev = derive2 { name="admiraldev"; version="0.2.0"; sha256="0rclhf3d2mhsbxc4imp14kpjxw6g0hdy6v4y86qnvvyrb3cik46v"; depends=[dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; + admiralonco = derive2 { name="admiralonco"; version="0.2.0"; sha256="1dimbbj2yb24zyfgxqkhgkq0rk69hs8yy8xq4k05v99rwj3lyng8"; depends=[admiral admiraldev dplyr lifecycle lubridate magrittr rlang tidyselect]; }; admisc = derive2 { name="admisc"; version="0.30"; sha256="01b2qjxz0qicqjm1swvm04qkiwhr7zjn7lhqv26l6rj4yb43y339"; depends=[]; }; admix = derive2 { name="admix"; version="0.4.0"; sha256="1vfga2l6yay4l8q53siibf1ljr77fmcgbddlag414jmv2awckr0c"; depends=[fdrtool Iso latex2exp MASS orthopolynom pracma Rcpp]; }; admixr = derive2 { name="admixr"; version="0.9.1"; sha256="0wszpzs53cbnha13g2ldpq6z5ndw2v2xgrzadqkjm3hsp6akv4bl"; depends=[dplyr magrittr readr rlang stringr tibble]; }; @@ -5709,8 +5727,8 @@ in with self; { adnuts = derive2 { name="adnuts"; version="1.1.2"; sha256="0nkciv5sfj3bws6kpgrnaq4ziasibaz44w64mb86zmr8420nyc1q"; depends=[ellipse ggplot2 R2admb rlang rstan snowfall]; }; adobeanalyticsr = derive2 { name="adobeanalyticsr"; version="0.3.3"; sha256="1x1mkprp42xyfgiyffkj9lwzfv79dfwdg9alxfcpmgcvcrnbxcwi"; depends=[assertthat dplyr ggplot2 glue httr jose jsonlite lifecycle lubridate memoise openssl progress purrr R6 rlang scales stringr tibble tidyr vctrs]; }; adoptr = derive2 { name="adoptr"; version="1.0.0"; sha256="08d2fsqh5vczfr9cc8l554p6f0x85g58i5zg5j2m0chlmcispfk2"; depends=[glue nloptr]; }; - adpss = derive2 { name="adpss"; version="0.1.1"; sha256="0p2gyfc4rxmms8zdsq4hjsh1njfl2s736arq8aq1am2wh1w9k5ch"; depends=[Rcpp]; }; - ads = derive2 { name="ads"; version="1.5-7"; sha256="016zpkpf1c57djqn31qwpp3qk65xdacl7x7s72y4a02pimk735bv"; depends=[ade4 spatstat_geom]; }; + adpss = derive2 { name="adpss"; version="0.1.2"; sha256="1nk12yn1n483scnphf8pab8w633dk64c8n17zlq851zywbncs0gk"; depends=[Rcpp]; }; + ads = derive2 { name="ads"; version="1.5-8"; sha256="01iyjkxk2d86nl3kd498xaaw4b8y9l142pkbyr49w1h299d3d7f7"; depends=[ade4 spatstat_geom]; }; adsDataHubR = derive2 { name="adsDataHubR"; version="0.1.1"; sha256="19csivbg3f0g2r11l7jrciqq2lhg50km7qv29xfs6ba5cf678hb9"; depends=[httr jsonlite lubridate]; }; adventr = derive2 { name="adventr"; version="0.1.8"; sha256="0nja1a2xhaimz1fg2bb838x9a37sswjqjc68mp59gbdwkfpdii37"; depends=[BayesFactor boot car dplyr effects effsize forcats GGally ggplot2 Hmisc learnr lm_beta nlme readr robust sandwich sjstats tidyr WRS2]; }; adw = derive2 { name="adw"; version="0.2.1"; sha256="0yynzw4sxz42vqq4dxb0cs123mbir5nnsq45v9agjw889m7k7prj"; depends=[geosphere terra]; }; @@ -5718,18 +5736,19 @@ in with self; { adwordsR = derive2 { name="adwordsR"; version="0.3.1"; sha256="1w5qg4psm8pj89f09pz7in8zkafaimik1n6hx29y55jpmbxbk2gn"; depends=[RCurl rjson]; }; afc = derive2 { name="afc"; version="1.4.0"; sha256="1iy1wa88kf6zi6x7lbd0jdir653cvzvdraliqpxbac413wwb5gwl"; depends=[]; }; afdx = derive2 { name="afdx"; version="1.1.1"; sha256="1654vxakdd11b5zhwy1vcv127xk5rifan6fs1k6w1qsk74j4drqv"; depends=[dplyr magrittr maxLik tidyr]; }; - afex = derive2 { name="afex"; version="1.1-1"; sha256="09q426s2zmzxx5ilxy0x5mflpb38pl075ss1s8xvpswkn6cia0b6"; depends=[car lme4 lmerTest pbkrtest reshape2]; }; + afex = derive2 { name="afex"; version="1.2-0"; sha256="1hii6mx4qbmv4m1hy44sp19xf0r7mc68p767bwc58qrgpawgymwb"; depends=[car lme4 lmerTest pbkrtest reshape2]; }; affinity = derive2 { name="affinity"; version="0.2.5"; sha256="0nfh3g8nifv5773pihgzxh62wa837i2dk1kgf15z28cb5xfj2y8h"; depends=[raster reproj]; }; affinitymatrix = derive2 { name="affinitymatrix"; version="0.1.0"; sha256="10i7wzl4xiphj5f466ga7c4ha3mkyqn63x1z0jyx50m0b84sggq1"; depends=[expm ggplot2 ggrepel Hmisc MASS]; }; affluenceIndex = derive2 { name="affluenceIndex"; version="2.1"; sha256="0vcg4gphs0yxdxsgw7kj9r3hvjpfs2z8sjvllvfw9ki3y7jy5jb8"; depends=[spatstat spatstat_geom]; }; afmToolkit = derive2 { name="afmToolkit"; version="0.0.1"; sha256="1pm3xyh9vq10mmfgknlvlfr9f027xprrgy1dvbbxpi7f111hv1gl"; depends=[assertthat DBI dplyr ggplot2 gridExtra minpack_lm scales tibble]; }; afpt = derive2 { name="afpt"; version="1.1.0.2"; sha256="1z0r4r7prxbhadmkdg6345g0b5vq9dqyyw9hh3fpad9zkc7k6xbc"; depends=[]; }; - africamonitor = derive2 { name="africamonitor"; version="0.2.1"; sha256="02fgl63f460v3ssh5z5nd0gw3rny3nxs245am6slnk1l3v1pi5cj"; depends=[collapse data_table DBI RMySQL]; }; + africamonitor = derive2 { name="africamonitor"; version="0.2.2"; sha256="06k600wbvzxy3lk7niil84xndcnbar88z07qxyqwklvl07jcpc9h"; depends=[collapse data_table DBI RMySQL]; }; aftgee = derive2 { name="aftgee"; version="1.1.6"; sha256="1sq6d6zkr4whg61phz22gb5zh7wxg2il39w2g5s812i4hiipqj4r"; depends=[BB geepack MASS survival]; }; afthd = derive2 { name="afthd"; version="1.1.0"; sha256="0gg2cp3sj28f3pi5rqh737hna3imwarwas01jacm0m2h27587k7y"; depends=[glmnet photobiology R2jags rstpm2 survival]; }; afttest = derive2 { name="afttest"; version="4.2.1.1"; sha256="06l11gjfv2a4jsdi7f88w7pk04a2mfl2jx969z7w4n4nlmz0bz8z"; depends=[aftgee ggplot2 gridExtra Rcpp RcppArmadillo survival]; }; ag5Tools = derive2 { name="ag5Tools"; version="0.0.1"; sha256="1390acslndzvvhdc6pk9cfvhval1wqgiic353f03qv0rvhxbyzad"; depends=[fs reticulate terra]; }; agRee = derive2 { name="agRee"; version="0.5-3"; sha256="1wi8jn14kpsj5z49my6fz8j6zxysddxm8svw86cnzsmnbj6mzq7x"; depends=[coda lme4 miscF R2jags]; }; + ageg = derive2 { name="ageg"; version="1.0.0"; sha256="0dcmwgznxf1jjsifpm3nn3jk25mm27l6f6f6jfi2n3crxgqfizyv"; depends=[]; }; aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; }; aghq = derive2 { name="aghq"; version="0.4.0"; sha256="12zzadx0qfh5wg8092w777c9ymd1m6gq3gwmfp9pf9bn3s31vij3"; depends=[Matrix mvQuad numDeriv polynom rlang]; }; aglm = derive2 { name="aglm"; version="0.4.0"; sha256="0rcyrzfi3l1k53c9qs1gfrcflnhdnri9sq6py8s6fw4wcn55kf67"; depends=[assertthat glmnet mathjaxr]; }; @@ -5759,15 +5778,18 @@ in with self; { aimPlot = derive2 { name="aimPlot"; version="1.0.0"; sha256="1d52b7kccxba6j7n0gbd7pzs0p87zn32vv8gdf2f7lyr75qzgz7x"; depends=[ggplot2]; }; aimsir17 = derive2 { name="aimsir17"; version="0.0.2"; sha256="0v804maqaygqhw3y9wqap3h9vvjniqnnbsv1psjj500r2yscicxs"; depends=[tibble]; }; airGR = derive2 { name="airGR"; version="1.7.0"; sha256="0miqkhapw3ch4wss8dkygf5j5rj9jwdm7xdb4c5jfdnxdbbsxwjs"; depends=[]; }; + airGRdatasets = derive2 { name="airGRdatasets"; version="0.1.4"; sha256="1gz7irz0kzdni0dksi4qa0xa6n018l31xjdh4w1r40v38g4c6hai"; depends=[]; }; airGRdatassim = derive2 { name="airGRdatassim"; version="0.1.3"; sha256="05c108rcj4rlzrbabai95abxhyjsrrrsgvds4zamvyzpjl64f9ps"; depends=[airGR]; }; airGRiwrm = derive2 { name="airGRiwrm"; version="0.6.1"; sha256="1dr7xg8a6xfdihmf4x03wm268iz78lks15fx9hmpw6sp15xv5kdj"; depends=[airGR DiagrammeR dplyr]; }; airGRteaching = derive2 { name="airGRteaching"; version="0.2.13"; sha256="1j95b1rz83f1x8gp6107rdk9g81j47yhgdlf8y17f0ffgrvwwfky"; depends=[airGR dygraphs markdown plotrix shiny shinyjs xts]; }; aire_zmvm = derive2 { name="aire.zmvm"; version="0.8.2"; sha256="0z9knqdl7ihx2vph154qi1lh4s6yvlcw6kwry8k47mhh3p7pynsd"; depends=[dplyr httr lubridate progress readr readxl rvest sp stringr tidyr xml2]; }; + airnow = derive2 { name="airnow"; version="0.1.0"; sha256="0dpx2hkh0y6769pi8xzyi327lygxysckqz85z40ps50ghw02r8bh"; depends=[cli glue httr2 jsonlite lifecycle rlang tibble]; }; airportr = derive2 { name="airportr"; version="0.1.3"; sha256="1h8h0cdfqgxv8cf9hp82sx5n4a1z88qyyxicj7d2kmmybqqz2r5n"; depends=[dplyr]; }; airports = derive2 { name="airports"; version="0.1.0"; sha256="1ahfqqfcvr731hj0h7d00jd87h1adiryh42sv4mh318lk5rglm6f"; depends=[]; }; airqualityES = derive2 { name="airqualityES"; version="1.0.0"; sha256="1kf673ajk06ggy9524lip5flpfgq0gql7d46kgnri8l3kbzw7zcj"; depends=[tibble]; }; airr = derive2 { name="airr"; version="1.4.1"; sha256="1zr8nzhy75v82sk1lxp8xk34hxz84zjk9nrgx10kzrycpyrbfjw0"; depends=[jsonlite readr stringi yaml]; }; airt = derive2 { name="airt"; version="0.2.1"; sha256="1az5fd9zr6lgmcim4v6rzckl9yyw9myvhmzs76n71864gnzkbna4"; depends=[dplyr EstCRM magrittr mirt pracma rlang tibble tidyr]; }; + aisoph = derive2 { name="aisoph"; version="0.2"; sha256="1c64slva2yb3phflxslxbpp4iydxx92hrj9xi7dv1bsbag8n9xd7"; depends=[Iso Rcpp survival]; }; ajv = derive2 { name="ajv"; version="1.0.0"; sha256="1qd5ncb7rdnnvqfknsvq9nrpxrh0zv3jyh4b91dcvfvhp262vfrm"; depends=[RJSONIO V8 yaml]; }; akc = derive2 { name="akc"; version="0.9.8.1"; sha256="0prqvjbcm9aagjhxpzidi2jr2yddzqwqrwp5rm3ki8215fwr9mln"; depends=[data_table dplyr ggforce ggplot2 ggraph ggwordcloud igraph magrittr rlang stringr textstem tibble tidyfst tidygraph tidytext]; }; akiFlagger = derive2 { name="akiFlagger"; version="0.3.0"; sha256="08z5jvigzvl3af17dd8l6zil0s694i22x0a7xvb3n4fvg6fargz4"; depends=[data_table dplyr shiny zoo]; }; @@ -5791,7 +5813,7 @@ in with self; { alleHap = derive2 { name="alleHap"; version="0.9.9"; sha256="1fqrw645s3f5363p7jl3dzy8xphxdr1v6wdsjmqcqwpgvjqfr2zz"; depends=[abind]; }; allelematch = derive2 { name="allelematch"; version="2.5.1"; sha256="00117cj01psax4rjvy2nja5r2ss9l8zzjicczh46kp401i1ghmwc"; depends=[dynamicTreeCut]; }; allestimates = derive2 { name="allestimates"; version="0.2.2"; sha256="0g0j6q810665lfa3a9xwmv0hkgcp2a8g0xq0vfpvyykyqykgid3z"; depends=[broom dplyr ggplot2 speedglm stringr survival tibble tidyr]; }; - allhomes = derive2 { name="allhomes"; version="0.3.0"; sha256="1z39qd7hkl2xy0lhf8sgc4rjf4ihi3zbsadchc97h7p7cn9mjbpk"; depends=[dplyr htmltab httr jsonlite magrittr purrr readr rlang stringr tibble tidyr]; }; + allomr = derive2 { name="allomr"; version="0.1.0"; sha256="0iprldmqww928m3mic3lcb8vhsr4ihrn83lvlx3wr3n7zch72771"; depends=[]; }; alluvial = derive2 { name="alluvial"; version="0.1-2"; sha256="039frwrsxq1lb97s7vf2vbyyadimkigs628ymym06fxka53drdkp"; depends=[]; }; almanac = derive2 { name="almanac"; version="0.1.1"; sha256="0qsczk74ihy7ac5c4dzd6ax5gfmr56wfnjxg396qc2c3xykb7dd5"; depends=[glue lubridate magrittr R6 rlang V8 vctrs]; }; alookr = derive2 { name="alookr"; version="0.3.7"; sha256="0sdwphzxjh8y4gi3pnsdddra0x085h30m520j8im25z1bhxp0sq7"; depends=[caTools cli dlookr dplyr future ggmosaic ggplot2 glmnet MASS MLmetrics parallelly party purrr randomForest ranger rlang ROCR rpart tibble tidyr tidyselect xgboost]; }; @@ -5803,7 +5825,7 @@ in with self; { alphashape3d = derive2 { name="alphashape3d"; version="1.3.1"; sha256="0d3rxvsb0yl900dlpr1v5w56z8ci9rbp5dlwx7l2laifyprsns2i"; depends=[geometry rgl]; }; alphastable = derive2 { name="alphastable"; version="0.2.1"; sha256="01gwrcxlj2jlb8axs5qmrsixk3a8b7044ypyjg6dpdcxfbcf5fvp"; depends=[mvtnorm nlme nnls stabledist]; }; alphavantager = derive2 { name="alphavantager"; version="0.1.2"; sha256="0c97p8njga4xffvsa0kj0s4y0agjr44y9bnjxs5phm1ldcqjs0yj"; depends=[dplyr glue httr jsonlite purrr readr stringr tibble tidyr timetk]; }; - alqrfe = derive2 { name="alqrfe"; version="1.0"; sha256="0prrrbkbqq9k9xx2b6ism6wvn90iwy9sx57g9f9c8djhkmyd90pc"; depends=[MASS Rcpp RcppArmadillo]; }; + alqrfe = derive2 { name="alqrfe"; version="1.1"; sha256="0lzw1sk4iaqzmg1a39v3wxcgj9hchyjcxq7b3nm83al8r75rfvdk"; depends=[MASS Rcpp RcppArmadillo]; }; alr4 = derive2 { name="alr4"; version="1.0.6"; sha256="0v98yzi0fcjxq0ak0w05001h8m9nfa9l0ann9bqvz8bwcmb3jlr2"; depends=[car effects]; }; altR2 = derive2 { name="altR2"; version="1.0.0"; sha256="15nvbq3n76p2857ipyf3q6rs2mwjqsp9gr3rmzbjfm8lrj0faxsv"; depends=[gsl purrr]; }; altadata = derive2 { name="altadata"; version="0.1.1"; sha256="0wv8a0423k0gw5i0qgz5d3wqw22a9pk7r80fp33pn0mxq9b54zdv"; depends=[httr jsonlite]; }; @@ -5852,15 +5874,16 @@ in with self; { aniview = derive2 { name="aniview"; version="0.1.0"; sha256="1klakkmdk4xllaxd0pllvxi4396n6rz2idz55niy91mp0fhcjhwf"; depends=[htmltools jsonlite]; }; anndata = derive2 { name="anndata"; version="0.7.5.5"; sha256="1ync82qp0v6zszibz8bwhlyknf99v3iki8cwq4n4vwmg9z7hrb54"; depends=[assertthat Matrix R6 reticulate]; }; annotater = derive2 { name="annotater"; version="0.2.2"; sha256="1yzsamy4zrr7v0kjnc3x034a7ffw1zj7cc5dx11pcwyhk88yba7z"; depends=[dplyr purrr readr rlang rstudioapi stringi stringr tibble tidyr]; }; + annotator = derive2 { name="annotator"; version="0.0.1"; sha256="1llr17ac1sr5ih8k5gy8rzmbjhqr3iv0xz3bh3havhlcwlcrpvj0"; depends=[glue htmlwidgets imager knitr shiny stringr]; }; anocva = derive2 { name="anocva"; version="0.1.1"; sha256="1byg40jla71k1901js5h9yq89j63d00vkm60id1fxlpv95c4wdrr"; depends=[cluster]; }; anomalize = derive2 { name="anomalize"; version="0.2.2"; sha256="13ncx17hdwv7799s7y6p3wvf59dad97y8rs9p56cbd91f6jkjgs5"; depends=[cli crayon dplyr ggplot2 glue purrr rlang rstudioapi sweep tibble tibbletime tidyr timetk]; }; anomaly = derive2 { name="anomaly"; version="4.0.2"; sha256="110rdzz6l80vjc0q0gb0f829vb70r97p19ywa7gbl2cbkj2s1cci"; depends=[assertive BH caTools cowplot dplyr ggplot2 magrittr Rcpp Rdpack reshape2 rlang robust robustbase runner xts zoo]; }; anovir = derive2 { name="anovir"; version="0.1.0"; sha256="1x7lvj7xchbv6siyc9miivmf0rlxrjflal4icyvbxgdr285s2s9w"; depends=[bbmle]; }; anscombiser = derive2 { name="anscombiser"; version="1.1.0"; sha256="1hakvxgc50zshi5kplg90r0499mihhwvhhz7bshndjxxci1ashkl"; depends=[]; }; - antaresEditObject = derive2 { name="antaresEditObject"; version="0.3.0"; sha256="04rdq3kbliac1iaxqflf3qhh58qgl9pxb2qh44wkknb91ga0845x"; depends=[antaresRead assertthat data_table doParallel pbapply whisker]; }; + antaresEditObject = derive2 { name="antaresEditObject"; version="0.4.0"; sha256="03zpg86hx3a99vvhbyj06b34lqd791l0qbs4a3g8xnd2gkmmjr75"; depends=[antaresRead assertthat cli data_table doParallel httr jsonlite pbapply whisker]; }; antaresProcessing = derive2 { name="antaresProcessing"; version="0.18.1"; sha256="1dlq850xqh9534ws88ma3vv5r79cbabn6r6a2jmicxx116s7wjrz"; depends=[antaresRead data_table]; }; - antaresRead = derive2 { name="antaresRead"; version="2.3.0"; sha256="12pvg2w7j0aaqn2xf5rgr4d25002xjbisxiva0q7rmi35jl1xkqh"; depends=[bit64 data_table doParallel httr jsonlite lubridate pbapply plyr shiny stringr]; }; - antaresViz = derive2 { name="antaresViz"; version="0.17"; sha256="18f398qvy88w9rlkd08h5gvk7vwh349cjxi4pa59s5fs4ihhmdd2"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; + antaresRead = derive2 { name="antaresRead"; version="2.3.1"; sha256="1hiyjg4qa6qpyfbwlwa787sacf23z1mjaws24nj3h18zvwq2wk87"; depends=[bit64 data_table doParallel httr jsonlite lubridate pbapply plyr shiny stringr]; }; + antaresViz = derive2 { name="antaresViz"; version="0.17.1"; sha256="072nh0x0qrbi9va27r20vjzjsbjriqbzbpwc7vl40pimjd0hd2x4"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; anthro = derive2 { name="anthro"; version="1.0.0"; sha256="169h2vhdd2kxh4228lx1ab3fipixvka4686ngx6h8g15li9828s9"; depends=[survey]; }; anthroplus = derive2 { name="anthroplus"; version="0.9.0"; sha256="1wnj2idgdnh2gdw34x40adijf2sxp3k72j45pqqxg4aqc1wrvvv1"; depends=[anthro]; }; anticlust = derive2 { name="anticlust"; version="0.6.1"; sha256="1f06968i5hpfavcwmcqij0mb13jhp02gbkqiijilyiz2kc8p0nfc"; depends=[Matrix RANN]; }; @@ -5870,42 +5893,43 @@ in with self; { anybadger = derive2 { name="anybadger"; version="0.1.0"; sha256="1aa09v5k5nlvhlir8saa5gnrq7cb1djbdc8y85cjgb3skay94hzv"; depends=[config glue magrittr purrr R6]; }; anyflights = derive2 { name="anyflights"; version="0.3.3"; sha256="1iwiil15zc4zq6y7ns8r6w27w75v72fm3syn46bxrspw0iy0lj3v"; depends=[curl dplyr glue httr lubridate progress purrr readr roxygen2 stringr usethis vroom]; }; anytime = derive2 { name="anytime"; version="0.3.9"; sha256="0jjpqynai5nd7mfy1smb44356f3d5bmpxhs1i9x9jw5c959c35hh"; depends=[BH Rcpp]; }; - ao = derive2 { name="ao"; version="0.2.3"; sha256="165hgrxj2gsvkczb32480i31zs82c5mamvy2c47gsz777mw9sw1h"; depends=[ggplot2 lifecycle optimizeR rlang]; }; + ao = derive2 { name="ao"; version="0.2.4"; sha256="1wdnb1hlhi52y0jg9fpxzvhmn1sjgsh4g3vg7vc0jlbsjw9fssp9"; depends=[ggplot2 optimizeR rlang]; }; aod = derive2 { name="aod"; version="1.3.2"; sha256="0p2i536s0aa54rah1l465g77k2ldn6jm6s25y9vc06mk29xvx1cv"; depends=[]; }; aods3 = derive2 { name="aods3"; version="0.4-1.2"; sha256="0rd4xr7nwac49m8h4pr8hv79giyv2rrlnz78r7mxa6lpgkmgqp4d"; depends=[]; }; aoos = derive2 { name="aoos"; version="0.5.0"; sha256="0y92vs27i0mkpjdclqzq4j9g1axkymhi3v8xp1v6hazh35yzjkfj"; depends=[magrittr roxygen2]; }; aopdata = derive2 { name="aopdata"; version="1.0.1"; sha256="11d9aipqcasrpi0fl2qnnqmg4wlsj3y9vy9cym4ka9jn2x1xxjns"; depends=[checkmate curl data_table httr sf]; }; aoristic = derive2 { name="aoristic"; version="1.1.1"; sha256="1zanf21qmnjmwzzccpdm1bwnyhv9zqjirrylfwmbpkzlmvp0a4pb"; depends=[dplyr ggplot2 lubridate openxlsx plyr scales tidyr]; }; - aorsf = derive2 { name="aorsf"; version="0.0.3"; sha256="1ckv7bz62cxmlj7i00piqyqk851fqk8rq2xk54hchvhbqi9x9s1w"; depends=[data_table Rcpp RcppArmadillo]; }; + aorsf = derive2 { name="aorsf"; version="0.0.4"; sha256="1pq4cllksky81qw0pblygsssxmw1rarygzzkmsln9jlcjgwxvw3f"; depends=[collapse data_table Rcpp RcppArmadillo]; }; aos = derive2 { name="aos"; version="0.1.0"; sha256="0nkl7dkqjfp4ahwmn3vs0akx6x2brf0m5gzzzx6pf54j1qwypbhf"; depends=[htmltools jsonlite]; }; apTreeshape = derive2 { name="apTreeshape"; version="1.5-0.1"; sha256="1wxhfp21ir9yv4wnbh7ay2x05k822nsyd5smlxmk67wm5w4vr1v1"; depends=[ape coda cubature pbapply quantreg]; }; apa = derive2 { name="apa"; version="0.3.3"; sha256="1nvhl5fqramsdrkpl1nmgr1vmki5c1lkdi1kkx7ihf0cz35f7c2a"; depends=[dplyr magrittr MBESS purrr rmarkdown stringr tibble]; }; apaTables = derive2 { name="apaTables"; version="2.0.8"; sha256="0jy6x0z9ivqqkjihqhyg3fxyghqa9gs6q2bpxzjdnbcb3kq151vd"; depends=[boot broom car dplyr MBESS tibble]; }; apaText = derive2 { name="apaText"; version="0.1.1"; sha256="1r217k60w027i63nbj24b1rm37m4qf7a6iirc941s945babkxcmb"; depends=[dplyr]; }; - apache_sedona = derive2 { name="apache.sedona"; version="1.2.1"; sha256="0iif2j6nsafjs496vj8k04z9bgzfv4y92j0a6r0a51c0i7a9k5yx"; depends=[DBI dbplyr dplyr rlang sparklyr]; }; + apache_sedona = derive2 { name="apache.sedona"; version="1.3.0"; sha256="0d9l0n0qnjx42ia53s9fss856iz9caxaa876ccbcaxavh7l7km56"; depends=[dbplyr dplyr rlang sparklyr]; }; apc = derive2 { name="apc"; version="2.0.0"; sha256="0vh6iyxm46k8sfa1xgz0y6m619snnm8s072kml5qgiiw5s7bqnpq"; depends=[AER car ChainLadder ggplot2 ISLR lattice lmtest plm plyr reshape survey]; }; - apcf = derive2 { name="apcf"; version="0.2.0"; sha256="0r107kl7s2zaa5mvm3926ww01k4brh4qn7y729f7l2lnmy3zidx5"; depends=[Rcpp wk]; }; + apcf = derive2 { name="apcf"; version="0.3.0"; sha256="194w409gz052a8gcsdn3v68sqjcwrhb1ck712nljd0iy1mgdz6cs"; depends=[Rcpp wk]; }; apcluster = derive2 { name="apcluster"; version="1.4.10"; sha256="1820j1xjlbmw6j2fwwv2g806dqpk5qrbbaqsrbrn6igql8pzf552"; depends=[Matrix Rcpp]; }; apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; ape = derive2 { name="ape"; version="5.6-2"; sha256="0mqjsh7maczd02iwa4fb896q3kgd9jnlilq7y1yz18ch0c54aqlv"; depends=[lattice nlme Rcpp]; }; apercu = derive2 { name="apercu"; version="0.2.4"; sha256="046gf4dzypl6mmq7xqkyrdasq9rsjxzsii7w4nxkbn4c40kh7bf7"; depends=[pls]; }; apex = derive2 { name="apex"; version="1.0.4"; sha256="1ddzbzpnc17yvbl5yfyp0widqlx48qwlh80xcmyzhv045s680rdk"; depends=[adegenet ape phangorn]; }; apexcharter = derive2 { name="apexcharter"; version="0.3.1"; sha256="1kvlsnsvgiz3akcqpiyxin264qpjbz3m8g98jgfwyiqkjhqs441a"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang shiny]; }; - aphid = derive2 { name="aphid"; version="1.3.3"; sha256="1jqpn7w5sgy4k49qd9ci6yj89s55gzwl5w5ldw793mzpg6if7lfn"; depends=[kmer openssl Rcpp]; }; - aphylo = derive2 { name="aphylo"; version="0.2-1"; sha256="0kvxz5r1z63610k127ji7dangrq7pd0zfgf5yqsvn0v7j4c9c5v5"; depends=[ape coda fmcmc MASS Matrix Rcpp xml2]; }; + aphid = derive2 { name="aphid"; version="1.3.5"; sha256="1pwr1i3wxh0l24cqp59q6n59p21v81fmgxkb4jmf50a3ggb1lcdj"; depends=[kmer openssl Rcpp]; }; api2lm = derive2 { name="api2lm"; version="0.1.4"; sha256="1hxamdf1332z8gfp5crvjhl26v9g3ibsg68vm0pas2aprh18rpjs"; depends=[]; }; apisensr = derive2 { name="apisensr"; version="0.3.0"; sha256="1mis266s4m0hp34m7b7p008dvw7780r8rypgbpk7h5hgd1w5d7m0"; depends=[config episensr ggplot2 ggraph glue golem htmltools igraph rhandsontable rmarkdown shiny shinyjs shinymaterial]; }; aplore3 = derive2 { name="aplore3"; version="0.9"; sha256="0af6klscsxvh4amp519b6r41bzysf61p040fj4l5706bbya1arhw"; depends=[]; }; - aplot = derive2 { name="aplot"; version="0.1.8"; sha256="17256cdn46cii97s0h2zmah9vs116ybnih78734lpkn7kmvdfcfr"; depends=[ggfun ggplot2 ggplotify magrittr patchwork]; }; + aplot = derive2 { name="aplot"; version="0.1.9"; sha256="04mv2jhkk47sqmm69dbcmy84han2k19sv6vnmk572xbm19i661xg"; depends=[ggfun ggplot2 ggplotify magrittr patchwork]; }; aplpack = derive2 { name="aplpack"; version="1.3.5"; sha256="0kv6sbw8832hlfc6164bfvg1ga4hkfw4c7i11dlz7mbhrw2vqm24"; depends=[]; }; apng = derive2 { name="apng"; version="1.1"; sha256="0g1rs8wdcbqhyjis2r1a4d96jf0486ncnap97yjv08nk574d42wp"; depends=[bitops]; }; apollo = derive2 { name="apollo"; version="0.2.8"; sha256="129qa303fckan6n8zdgsa08720aiyv623rz5mdv4l2by53i7lb2s"; depends=[coda Deriv matrixStats maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB stringr tibble]; }; + appleadsR = derive2 { name="appleadsR"; version="0.1.0"; sha256="19xkzykk6zdbswdkfix9nqnfgab4r9c21rqwpma1r6fjapsp81jf"; depends=[jsonlite]; }; appler = derive2 { name="appler"; version="0.1.4"; sha256="0a3xhr2zbzni81y00sa1d35spcd1f6blhnkmyf76wf00z3vhrk2i"; depends=[glue httr jsonlite rvest xml2]; }; applicable = derive2 { name="applicable"; version="0.1.0"; sha256="1n81aa5by0fd47wjksdl0zpzf0w4vgrns6iqv5i9lqs7g64zggs0"; depends=[dplyr ggplot2 glue hardhat Matrix proxyC purrr rlang tibble tidyr tidyselect]; }; appnn = derive2 { name="appnn"; version="1.0-0"; sha256="0wkpr6lcd68wlzk6n622ab7sd99l837073czn4k56hw8bw9v68j3"; depends=[]; }; approxOT = derive2 { name="approxOT"; version="1.0.2"; sha256="1j17dcs4nxss81q1d3mf6h7nkzrq202n7pqb7phza085xmjvpksx"; depends=[BH Rcpp RcppCGAL RcppEigen]; }; approximator = derive2 { name="approximator"; version="1.2-7"; sha256="0smqjdla9mvzy164nsb0pw0sgal3w2wnyhqidp74h0smyczrr1zw"; depends=[emulator mvtnorm]; }; approxmatch = derive2 { name="approxmatch"; version="2.0"; sha256="1n6v1h4zf1nf8j1a5d0h95v6q8dff39v9061i7zzi9ci3lw04748"; depends=[]; }; + appsflyeR = derive2 { name="appsflyeR"; version="0.1.0"; sha256="1ch0cjxl7jzrdch3mz1cayc88mbf2dgp0l775c3li44204pxp8wl"; depends=[jsonlite]; }; aprean3 = derive2 { name="aprean3"; version="1.0.1"; sha256="17rnq02sncl6rzwyln10200s43b8z1s2j0kdi9kgcb6qr51v12rv"; depends=[]; }; aprof = derive2 { name="aprof"; version="0.4.1"; sha256="14qclp88j4ygd4vrxxpgy2s9939wcajjsqycdzpvn64ws29sdpvh"; depends=[testthat]; }; apsimx = derive2 { name="apsimx"; version="2.3.1"; sha256="1d1ipzf9ahdb3540zjcyzj4dwx5v8b73av790ahhbmc128vdmspj"; depends=[DBI jsonlite knitr RSQLite xml2]; }; @@ -5929,10 +5953,11 @@ in with self; { archivist = derive2 { name="archivist"; version="2.3.6"; sha256="0q1qysack30xzxdbvvi56rk7r85hsj4ghls9r70ki7bl3rqwr4c9"; depends=[DBI digest flock httr lubridate magrittr RCurl RSQLite]; }; archivist_github = derive2 { name="archivist.github"; version="0.2.6"; sha256="092fzi505vx9xbk41m86d0isxna42iflp7q2kjiqa6z1ccvim2yx"; depends=[archivist digest git2r httr jsonlite]; }; arcpullr = derive2 { name="arcpullr"; version="0.2.7"; sha256="1nbz5br6vm0ka9jn2cnkf2g90l6d0pzvma2x5dlq5arpg5jmca4b"; depends=[bslib dplyr DT ggplot2 httr jsonlite raster rgdal rlang sf tidyr]; }; - arctools = derive2 { name="arctools"; version="1.1.4"; sha256="0ldhmv2fs3gi5v5d36y8i1mbw3w4vf2h8f7avlk5zgywn46j75zf"; depends=[lubridate runstats]; }; + arctools = derive2 { name="arctools"; version="1.1.6"; sha256="01a1kmkmnwm8ryv1hr0w79ghbk844w7fnv1yiq9mmwrs4jbgfrcf"; depends=[lubridate runstats]; }; + ardl_nardl = derive2 { name="ardl.nardl"; version="1.2.1"; sha256="1hx2zhb1qxvg9adyx72ddw2b0b1c93qxk4zy6r7zqybcd3lrmqwb"; depends=[car dplyr gets lmtest nardl rlist sandwich stringr texreg tseries]; }; areabiplot = derive2 { name="areabiplot"; version="1.0.0"; sha256="0izgvlg174jbr3fm3qc8zh23kfs7hn9bwd40x6vm90iivrrgdcp7"; depends=[nipals]; }; areal = derive2 { name="areal"; version="0.1.8"; sha256="14hwif59lxjdf0crq5mp2w2rhz9b7l1b33r0ssd1j60ml2fv6488"; depends=[dplyr glue purrr rlang sf]; }; - areaplot = derive2 { name="areaplot"; version="1.2.2"; sha256="0vyhf3662ppcahaw2zrxgpcxcn8fysd6lhl8vgr7cs8kl6fm4x47"; depends=[]; }; + areaplot = derive2 { name="areaplot"; version="1.2.3"; sha256="1j342mgjfxca38j4xx0bp35fjdx1xsfp1czdlpahavg5xm94lwbf"; depends=[]; }; arena2r = derive2 { name="arena2r"; version="1.0.0"; sha256="14zjpglp389pldi436935fz6mgi4jdgfii1m035nsvihrms9gqkh"; depends=[dplyr ggplot2 magrittr purrr rlang shiny shinyBS shinydashboard shinyjs tidyr]; }; arenar = derive2 { name="arenar"; version="0.2.0"; sha256="08b865v7ringqzm5m4ib4nrmlyqywir6bjj7alzmg06dy7mrl9s7"; depends=[auditor DALEX fairmodels gistr iBreakDown ingredients jsonlite plumber]; }; arfima = derive2 { name="arfima"; version="1.8-1"; sha256="1msbd52989yqxqxgapgjvzfzzpkr2w9dp7ig8racqpzwqnjhpswb"; depends=[ltsa]; }; @@ -5942,7 +5967,7 @@ in with self; { argonDash = derive2 { name="argonDash"; version="0.2.0"; sha256="1wykr7y5375g1nb18ynybccxmd948xrr0gdwxxqsfjf782vlgd2d"; depends=[argonR htmltools shiny]; }; argonR = derive2 { name="argonR"; version="0.2.0"; sha256="15hlvansqnky9bnq4r7xza3hb1hzylmhz8117wxz9lxa1wiky2is"; depends=[htmltools rstudioapi]; }; argosfilter = derive2 { name="argosfilter"; version="0.70"; sha256="1cqhpq5z807azpc45d00031bhw5q69111jsblyqdp5bg6qinrj9c"; depends=[]; }; - argparse = derive2 { name="argparse"; version="2.1.6"; sha256="14p57nm0w3siqd473snzhpmnvsgl72x92pdcd64vhy2qg6nzmmra"; depends=[findpython jsonlite R6]; }; + argparse = derive2 { name="argparse"; version="2.2.1"; sha256="193pjjy4vkmzmsc1w69szafgrisvn08gddilbxcg671sdk0dxd7k"; depends=[findpython jsonlite R6]; }; argparser = derive2 { name="argparser"; version="0.7.1"; sha256="0xcl0ivsbc4iw8s7027q4cx68j6s5lihbby0xa9pmlv4wjmcvdr6"; depends=[]; }; argus = derive2 { name="argus"; version="0.1"; sha256="0k016fpz03gzsy165cqk1gbszrk7xr330hxcnjl1d5r2hnfxgvxl"; depends=[Runuran]; }; ari = derive2 { name="ari"; version="0.3.5"; sha256="03w99c918jp23d0kl26vx4m7xjicpgwl5rhn9d0fsm4kvv7j87li"; depends=[hms progress purrr rmarkdown rvest text2speech tuneR webshot xml2]; }; @@ -5956,12 +5981,12 @@ in with self; { aroma_affymetrix = derive2 { name="aroma.affymetrix"; version="3.2.1"; sha256="1yzmqh7f3x5mzws7azxa6rgqv8kcm861y9pc5ppc0vsgz7fvpvvs"; depends=[aroma_apd aroma_core future listenv MASS matrixStats R_cache R_devices R_filesets R_methodsS3 R_oo R_utils]; }; aroma_apd = derive2 { name="aroma.apd"; version="0.6.1"; sha256="0by8nss4m1hrd33bv9vdqgf67117a48y3wdkyc3q35anlz7kn3yk"; depends=[R_huge R_methodsS3 R_oo R_utils]; }; aroma_cn = derive2 { name="aroma.cn"; version="1.7.0"; sha256="0d4wgc9vyr89i1588zh61f5wjsizv9j5y0j8zhrw65r9y8ffwa0w"; depends=[aroma_core future_apply matrixStats PSCBS R_cache R_filesets R_methodsS3 R_oo R_utils]; }; - aroma_core = derive2 { name="aroma.core"; version="3.2.2"; sha256="0ma84hhqn0g4pw0b8zkdcrz96z3j3lnw3yka0gd9861s80p33q1m"; depends=[BiocManager future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; + aroma_core = derive2 { name="aroma.core"; version="3.3.0"; sha256="12118xdb74c4b2ca5dq57zxkrrcjjji10b5a1qxpixkrc36bfskv"; depends=[BiocManager future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; arpr = derive2 { name="arpr"; version="0.1.2"; sha256="02qsvmgnyr7aqgpij8m5yg9cww8wbrg6a33vxxvy3sl9v5f7vzh5"; depends=[magrittr rlang]; }; arrApply = derive2 { name="arrApply"; version="2.1"; sha256="0qy7iwi580rrf3sycsbv6qgxsqcdy9pdbnkdrx81j68qni9iw737"; depends=[Rcpp RcppArmadillo]; }; arrangements = derive2 { name="arrangements"; version="1.1.9"; sha256="0nrlyxgn6667l2rb1q5rvps1anld9aq88qqr3ch2i6zchnqxrdg9"; depends=[gmp R6]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.1-0"; sha256="02rl530qxi1idiqpmzg5wr9vl5c7phizhpj64k5pn8xq9zfxbpaz"; depends=[svUnit]; }; - arrow = derive2 { name="arrow"; version="10.0.0"; sha256="04qsj68zsqcwkv1ryp4l0is474siyi1b64dy41fr74ryj7mbamg8"; depends=[assertthat bit64 cpp11 glue purrr R6 rlang tidyselect vctrs]; }; + arrow = derive2 { name="arrow"; version="10.0.1"; sha256="0dwdi9sq7wv34ia6kg446pqf5za75hl6zrb2ly51p2zdr4g69p0y"; depends=[assertthat bit64 cpp11 glue purrr R6 rlang tidyselect vctrs]; }; ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; }; arse = derive2 { name="arse"; version="1.0.0"; sha256="0ssaalc058m09gfcr1n0s729rx2plia3zkhlynj67drclyvhyb0i"; depends=[dplyr pracma]; }; arsenal = derive2 { name="arsenal"; version="3.6.3"; sha256="0qvs3ld28djnjnggdhqjwq8sbv8zz322qahlvf7dnx35yqf6xkms"; depends=[knitr]; }; @@ -5970,14 +5995,14 @@ in with self; { arules = derive2 { name="arules"; version="1.7-5"; sha256="0d04w28hl9gcrvkj0v0q77x4a89jhvzf1imw58xfgncap8mc6555"; depends=[generics Matrix]; }; arulesCBA = derive2 { name="arulesCBA"; version="1.2.5"; sha256="13p876k3wg84khvzf6kkjpna0l9yjxyq43nh9dnpma7sidq5ldi0"; depends=[arules discretization glmnet Matrix]; }; arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-8"; sha256="0kqvi7dzq3mrn6cq22gwxh4p54mgfn9s1sd2cfnbw1f9zp078lsn"; depends=[arules rJava]; }; - arulesSequences = derive2 { name="arulesSequences"; version="0.2-26"; sha256="09571bqqbf19w80nbs34k1zq54c6yyfcqm2a2jpkd41jmij6pvj5"; depends=[arules]; }; + arulesSequences = derive2 { name="arulesSequences"; version="0.2-27"; sha256="12x9zfl1qp88d28k7lpai0ksgkwvanqf7cw7ig6sjsg067x7pzz1"; depends=[arules]; }; arulesViz = derive2 { name="arulesViz"; version="1.5-1"; sha256="06mqdqg5amcrb75lf77wilb9v8c7f50b54p0pk76q0jvirycqrzc"; depends=[arules dplyr DT ggplot2 ggraph igraph plotly scatterplot3d seriation tibble tidyr vcd visNetwork]; }; asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; - asbio = derive2 { name="asbio"; version="1.8-2"; sha256="05f0b9zl5zayrkqxfmpljwp2q3sbw8khrdqg5m3f6ic339f8iyka"; depends=[deSolve gWidgets2 gWidgets2tcltk lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; + asbio = derive2 { name="asbio"; version="1.8-3"; sha256="1p0hfgkfcnxdf2jivn1mm3rjdqs4arik6ajc1gc1mmdwfwh82s5x"; depends=[deSolve gWidgets2 gWidgets2tcltk lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; ascentTraining = derive2 { name="ascentTraining"; version="1.0.0"; sha256="1dwmr33jc2fp9x51kzlqa4vib7xmzvz9a7qlfgvhxhld2bxlrrgi"; depends=[]; }; ascii = derive2 { name="ascii"; version="2.4"; sha256="0k675an7sl00bslx4yb6vvvgnp1kl244cfjljv632asqdm3rkmrv"; depends=[codetools digest survival]; }; asciiSetupReader = derive2 { name="asciiSetupReader"; version="2.4.0"; sha256="02s3p0qqa9h1kyx96c29blwgfkdm50p10kr14wklh19gibiznyfj"; depends=[data_table haven miniUI readr rstudioapi shiny stringr vroom zoo]; }; - asciicast = derive2 { name="asciicast"; version="2.2.0"; sha256="14pbhywiv99hmmmmsr55yf8i1lwryzxply2gwikpddiqfl07fi96"; depends=[cli curl jsonlite magick processx tibble V8 withr]; }; + asciicast = derive2 { name="asciicast"; version="2.3.0"; sha256="1nz0gbfk92p8c4940wmhm28l1jvgx459hspjbjl6b52v897wv3q2"; depends=[cli curl jsonlite magick processx tibble V8 withr]; }; asciichartr = derive2 { name="asciichartr"; version="0.1.0"; sha256="1b73bbysnxy3x3gwhm80xry45m18yh716wrc93v1awk3c1p2cv3m"; depends=[]; }; asciiruler = derive2 { name="asciiruler"; version="0.2"; sha256="0xhkbsy9dypk09avazgxczyfkh3rhdxhwci688dw1lxnhxv1hj24"; depends=[stringr]; }; ascotraceR = derive2 { name="ascotraceR"; version="0.0.1"; sha256="0h7q49pdchw0apyrm813qrl4sp6hym31awh1bjlk06fd76ynj72y"; depends=[circular data_table lubridate lutz purrr sf terra]; }; @@ -5992,7 +6017,7 @@ in with self; { aspect = derive2 { name="aspect"; version="1.0-6"; sha256="13pb1pslyka706v13b7hdrzzn5bxmj2l5irpd9f1pm1n8a1ivrrl"; depends=[]; }; aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; aspline = derive2 { name="aspline"; version="0.2.0"; sha256="1a68x6jvsaxviy2w361f19iqzsdsaf9kcqw5cknf4yz9fvkqhjny"; depends=[dplyr ggplot2 magrittr mgcv Rcpp rlang splines2 tidyr]; }; - asremlPlus = derive2 { name="asremlPlus"; version="4.3.36"; sha256="0hbg7asd7z0112jarprxkanqh3f2rlrbm6hkayv0spyn4z6hpqgl"; depends=[dae doParallel dplyr foreach ggplot2 RColorBrewer reshape2 sticky stringr]; }; + asremlPlus = derive2 { name="asremlPlus"; version="4.3.40"; sha256="03w16mlri6mb4zigb9fj8rfz10kwwwdkqf4l9x8az5z52aq7b7zc"; depends=[dae doParallel dplyr foreach ggplot2 RColorBrewer reshape2 sticky stringr]; }; r_assert = derive2 { name="assert"; version="1.0.1"; sha256="0n5l48yb0djl6rdj50p1dslpw3c5kbi15yz6z6rdgic575gjwzdc"; depends=[]; }; assertable = derive2 { name="assertable"; version="0.2.8"; sha256="1cciil1nzxd8gbj49w99jiv077lbpb59vx7bmb4p218aj2h5hqq4"; depends=[data_table]; }; assertive = derive2 { name="assertive"; version="0.3-6"; sha256="02palil82idqhhshcdjsfsja9qkqnd0dczqzj5gbccy4hfg1c0y4"; depends=[assertive_base assertive_code assertive_data assertive_data_uk assertive_data_us assertive_datetimes assertive_files assertive_matrices assertive_models assertive_numbers assertive_properties assertive_reflection assertive_sets assertive_strings assertive_types knitr]; }; @@ -6011,7 +6036,7 @@ in with self; { assertive_sets = derive2 { name="assertive.sets"; version="0.0-3"; sha256="1cqvh2syvh5b6d85h601zjmsdbbf3h8q98ids4dfl4frdshpasc7"; depends=[assertive_base]; }; assertive_strings = derive2 { name="assertive.strings"; version="0.0-3"; sha256="0n6jrk88670g4ym0r8ii40a08a90z1xadj8wcryk8h0nl04dchfm"; depends=[assertive_base assertive_types stringi]; }; assertive_types = derive2 { name="assertive.types"; version="0.0-3"; sha256="0zxq1jfrzgw95ll7alvm0xnk7aihjdksngq4ya2whyvfjbmv4vdb"; depends=[assertive_base assertive_properties codetools]; }; - assertr = derive2 { name="assertr"; version="2.8"; sha256="00764vv86r3bn4r85in4w637harffyw605fgq0dj6mrbrwcfb650"; depends=[dplyr MASS rlang]; }; + assertr = derive2 { name="assertr"; version="3.0.0"; sha256="1wi3mz968clvwqg6mbm32zhj4vyfskklk72b4028cjsfdry6bpfp"; depends=[dplyr MASS rlang]; }; assertthat = derive2 { name="assertthat"; version="0.2.1"; sha256="17wy5bdfzg73sg2clisg1k3zyn1adkj59x56m5nwia2k8z67zkw5"; depends=[]; }; assignPOP = derive2 { name="assignPOP"; version="1.2.4"; sha256="1zzapgzf09l39bckwykzr8im2wxmndpmzykll2wi7njwlklpjry3"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; assignR = derive2 { name="assignR"; version="2.2.1"; sha256="1v9vc5klyk713xp1xhcndfq0qprh0553a6wr9yb6c5p5r7mwgrlh"; depends=[geosphere maptools mvnfast raster rgdal rlang sp]; }; @@ -6039,7 +6064,7 @@ in with self; { atime = derive2 { name="atime"; version="2022.9.16"; sha256="07zmnbsglaaczn0sdzqz8749hsv578lr5w8qvjwl83sqpqmfs81y"; depends=[bench data_table git2r lattice]; }; atlas = derive2 { name="atlas"; version="1.0.0"; sha256="02wm22j40llmdi6z3rzgbc5fpkzmjfq0xar33bypvj1dx1zxygnd"; depends=[httr testthat]; }; atmopt = derive2 { name="atmopt"; version="0.1.0"; sha256="1h79ngq1236gz4w29fs3nj46a3m1x8a28z3xnhc6wn3a46cf8zzi"; depends=[DoE_base gtools hierNet]; }; - atom4R = derive2 { name="atom4R"; version="0.3-1"; sha256="0a3q76rl2gr2yvsbq5czbglvrwvkndbw6sskbrf86gmdksyb3ssc"; depends=[httr jsonlite keyring R6 rdflib readr XML zip]; }; + atom4R = derive2 { name="atom4R"; version="0.3-3"; sha256="08n9apmliwri1vyqwfvyqi7m8b9nj7zpi1vg8gcqlg17skxndm2m"; depends=[httr jsonlite keyring R6 rdflib readr XML zip]; }; atpolR = derive2 { name="atpolR"; version="0.1.1"; sha256="1mi2xghd5vxy6qx621dihx70wk3w1nqvm2h3j2drrb84b8zbvcvh"; depends=[Rdpack sf stringr terra]; }; atsd = derive2 { name="atsd"; version="1.2.0"; sha256="0jan8r5f2r3l2xpdf9rrv4smkr2l645rfdgdfjb1xa54jd3pqvqs"; depends=[httr RCurl]; }; attachment = derive2 { name="attachment"; version="0.3.0"; sha256="0rw1dqglnfwhql8342h15xq9qbvcsxd5cvipjvlz827ri428r8r0"; depends=[cli desc glue knitr magrittr rmarkdown roxygen2 stringr withr]; }; @@ -6076,16 +6101,16 @@ in with self; { autocogs = derive2 { name="autocogs"; version="0.1.4"; sha256="0v27l9a0ysj7x9wjka1jl1bq9rmxmzldclcp1w59a6807wjlszhx"; depends=[broom checkmate diptest dplyr ggplot2 hexbin MASS mclust moments progress tibble]; }; autoencoder = derive2 { name="autoencoder"; version="1.1"; sha256="0ly1aanayk28nx6yqfhl7d0zm4vg6rfjikf5ibn8zhmkrfyflj1y"; depends=[]; }; autoharp = derive2 { name="autoharp"; version="0.0.10"; sha256="0jn7nya4lb1pvdy7yyimxga4gn042jqwl3w82m6c244kqydm5fi0"; depends=[dplyr igraph knitr lintr magrittr pryr rlang rmarkdown shiny stringr tibble tidyr]; }; - autohrf = derive2 { name="autohrf"; version="1.0.4"; sha256="1fg3zxq39fiwj8jgxjzp71df7dkxy4srn2z3lfabacvlxg4q3r5k"; depends=[cowplot doParallel dplyr foreach ggplot2 gtools lubridate magrittr RColorBrewer]; }; + autohrf = derive2 { name="autohrf"; version="1.1.0"; sha256="1zmnrfak91q10aa9a3i816hln2skvbnamigcbsc1dbkj0j6mdqwd"; depends=[cowplot doParallel dplyr foreach ggplot2 gtools lubridate magrittr RColorBrewer]; }; autoimage = derive2 { name="autoimage"; version="2.2.3"; sha256="1jhkd7mbig6wpyc69iynfrj5i62lrwcwqbgjkmq8b9p5raglm1g2"; depends=[colorspace fields ggplot2 mapproj maps MBA]; }; autokeras = derive2 { name="autokeras"; version="1.0.12"; sha256="0wyqz40fc277z1q1zxdmmjzksnmlh58r27a6hx08h6hmzvng5avy"; depends=[keras reticulate]; }; automagic = derive2 { name="automagic"; version="0.5.1"; sha256="1mmm6kj6mxrn3s4v8ryszkxr9z7bh9cvhin7xjq111fkwly7wjkq"; depends=[dplyr formatR knitr magrittr purrr remotes yaml]; }; automap = derive2 { name="automap"; version="1.0-16"; sha256="0jz0p28gmx9cpzv4cz0xhbml3w1inf2nsd2ynbhmfxg5rm2f7dca"; depends=[ggplot2 gstat lattice maptools reshape sp]; }; automl = derive2 { name="automl"; version="1.3.2"; sha256="1nrg8q3y6rv69nmnsylg8rps4b4prx46j5a8ljlr24yc34504ck3"; depends=[]; }; - autonewsmd = derive2 { name="autonewsmd"; version="0.0.3"; sha256="0r642l1ifkj9dnzi7jbxfx9l40sm4yyjrbzb9v9w5dlmswlbay3b"; depends=[data_table git2r magrittr R6 rmarkdown]; }; + autonewsmd = derive2 { name="autonewsmd"; version="0.0.4"; sha256="0bpwg9gr55c9fyj9xhm8hr2zhw2skghqahdw4k2l402kx8aciq1p"; depends=[data_table git2r magrittr R6 rmarkdown]; }; autoplotly = derive2 { name="autoplotly"; version="0.1.4"; sha256="1z577jvadgiz028z7x0786d3qhlkrvv9i34xmllizvg94kxv3bl1"; depends=[ggfortify ggplot2 plotly]; }; autoshiny = derive2 { name="autoshiny"; version="0.0.2"; sha256="0s06ynnirgsh19x8qq4020piirkhvjqpvz372syygvlal062y6cn"; depends=[shiny]; }; - autostats = derive2 { name="autostats"; version="0.3.1"; sha256="1yn1p7zkswx0jswvfnizh5lzzwihn2wlwjw7bcv55zjpm9r3mhi8"; depends=[agtboost broom data_table dials doParallel dplyr flextable FOCI forcats framecleaner ggeasy ggplot2 ggthemes gtools janitor jtools lubridate magrittr nnet parsnip party patchwork presenter purrr readr recipes recosystem rlang rlist rsample stringr tibble tidyr tidyselect tune workflows xgboost XICOR yardstick]; }; + autostats = derive2 { name="autostats"; version="0.4.0"; sha256="0xyfv2akv308g3r0wq2dcg7l24p6bf3524x1ikj1lfmw07hca6k6"; depends=[broom data_table dials dplyr framecleaner ggeasy ggplot2 ggthemes gtools janitor jtools magrittr nnet parsnip party patchwork presenter purrr recipes recosystem rlang rlist rsample stringr tibble tidyr tidyselect tune workflows xgboost yardstick]; }; autostsm = derive2 { name="autostsm"; version="3.0.3"; sha256="1d80l7lxzrpwdd92cc41ykj2ylkdhndamqphprw9a3wf0zn7l39d"; depends=[data_table doSNOW foreach forecast ggplot2 ggrepel gridExtra kalmanfilter lmtest lubridate maxLik progress sandwich strucchange]; }; autothresholdr = derive2 { name="autothresholdr"; version="1.4.0"; sha256="1n8kfl7zk7smwmkj1rlp4j4i0jnwi2f0aw58jhlf7ivahrq0rmnk"; depends=[checkmate ijtiff magrittr purrr Rcpp rlang strex stringr]; }; av = derive2 { name="av"; version="0.8.2"; sha256="08h99iy05s1r9ix1i0mbzpz14hhvk0ima9165hhlxkl7w6qqld9j"; depends=[]; }; @@ -6097,6 +6122,7 @@ in with self; { avocado = derive2 { name="avocado"; version="0.1.0"; sha256="0qy9ripwydm3f70rpxwk0asc7r25hg8jcbrr4rz8bxs93q1lsz8x"; depends=[]; }; aweSOM = derive2 { name="aweSOM"; version="1.3"; sha256="0nfbn7rgazvc5nljf8i7bwpxy5j0w404bnrvi02k97jvmrra1dyb"; depends=[bslib cluster data_table DT e1071 fields foreign ggplot2 haven htmltools htmlwidgets kernlab kohonen rclipboard RColorBrewer readODS readxl rmarkdown shiny viridis]; }; aweek = derive2 { name="aweek"; version="1.0.3"; sha256="14n1xmargr89mf4n0bdzdwn7qh314a1xg1bid5px762vk0qf4fws"; depends=[]; }; + awinR = derive2 { name="awinR"; version="0.1.0"; sha256="09cp9wfb4aslfddlk72n0kawfghyn1fcjya5afjhiffwww5ps3iy"; depends=[jsonlite]; }; aws = derive2 { name="aws"; version="2.5-1"; sha256="1fhm87iax6bkvd4vszvjbcqw3b2drs11rjxr7zf2w4sgc72svaz8"; depends=[awsMethods gsl]; }; aws_alexa = derive2 { name="aws.alexa"; version="0.1.8"; sha256="0m1i1xgi9fqixq90ai2ag0079aa75nlyhbr3ln3yhk5g8zx9i9m9"; depends=[aws_signature dplyr httr xml2]; }; aws_comprehend = derive2 { name="aws.comprehend"; version="0.2.1"; sha256="0qn4mkdd17c8kmrm4ml7l1x3rzaw3gbykhrj3m0ga53crcqdhqri"; depends=[aws_signature httr jsonlite]; }; @@ -6113,7 +6139,6 @@ in with self; { awsMethods = derive2 { name="awsMethods"; version="1.1-1"; sha256="0hbmrcpdyg15zg4rysscsmxpxlpy0dkxx2aa63qibq7l1k14v4sh"; depends=[]; }; aziztest = derive2 { name="aziztest"; version="0.2.1"; sha256="0rpnyrb7zi42l1fc8ni0r5d0y6a4dr56917z8i54mv1jrk4hijjd"; depends=[]; }; azuremlsdk = derive2 { name="azuremlsdk"; version="1.10.0"; sha256="0s64kjrmcdnjdwh5mdm5vxgvrl9ghvfv6bair7qfzz32jlab99m0"; depends=[DT ggplot2 htmltools plyr reticulate rstudioapi servr shiny shinycssloaders]; }; - bRacatus = derive2 { name="bRacatus"; version="1.0.9"; sha256="0rwa452izd453nllirdvngcrf1inpc7njfhdlpwjvgsx9k3ri908"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; }; bReeze = derive2 { name="bReeze"; version="0.4-3"; sha256="17nc6qvw9l6sq8knd1mk193md2y3z1jlcjymqzl389yxj8s0i2il"; depends=[lubridate]; }; bSims = derive2 { name="bSims"; version="0.3-0"; sha256="055hqa5w4gaqz9mms9yj85wg0pgl6xa568nbjxm4qc75rsy91qg5"; depends=[deldir intrval MASS mefa4 pbapply]; }; bWGR = derive2 { name="bWGR"; version="2.1"; sha256="0sqr0ylap610bw5v52hr8z3kl7c09rfs3l12zgc56cl04i0dab85"; depends=[Matrix Rcpp RcppEigen]; }; @@ -6135,7 +6160,7 @@ in with self; { backtest = derive2 { name="backtest"; version="0.3-4"; sha256="1s0mf247dz2vvyf4m3sp9xiqhv7xcs4rphyg9gdcy73060sah2ad"; depends=[lattice]; }; bacondecomp = derive2 { name="bacondecomp"; version="0.1.1"; sha256="1sd6pbhmx8vxz5c2cvvadbjy7p15y91gzs3n0ish7h5br1vq8fpm"; depends=[]; }; bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; - badger = derive2 { name="badger"; version="0.2.1"; sha256="0ni3ns235n1haxrldk7s3zbgsg8q245jhki9b3r10yxlp94c2djs"; depends=[desc dlstats rvcheck usethis]; }; + badger = derive2 { name="badger"; version="0.2.2"; sha256="1y2yfd31nb16g0zwhwaqwb2k3v9f5yr5fvgd0y458v4066svhk70"; depends=[desc dlstats rvcheck usethis]; }; baffle = derive2 { name="baffle"; version="0.2.1"; sha256="09yfxxq252sbfx0yh6m0zkjvwdwgsj6ycr4n8llkqpf8qjspk22a"; depends=[]; }; bagged_outliertrees = derive2 { name="bagged.outliertrees"; version="1.0.0"; sha256="0fcd54j6vci2yvlb609dck4pwbn54irkdk472cjc965rcw6dz9z7"; depends=[data_table doSNOW dplyr foreach outliertree rlist]; }; baggr = derive2 { name="baggr"; version="0.6.21"; sha256="08f6wn1r3rxdlvchgxkrwpl08qlqqj6arvw4kkncvnb94g83cy4y"; depends=[bayesplot BH crayon forestplot ggplot2 gridExtra Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders testthat]; }; @@ -6148,7 +6173,7 @@ in with self; { bamboo = derive2 { name="bamboo"; version="0.9.25"; sha256="1il8sn8ck36b1m9hazhf6gmr58iqi2hjn0rrpcv1laij0lybrcws"; depends=[rscala]; }; bambooHR = derive2 { name="bambooHR"; version="0.1.0"; sha256="1m9kzr698lgcilmr5w5zs6q9rgpcdvqiavrhh6c4ar6ii07n274s"; depends=[cli curl dplyr fs glue httr janitor jsonlite lubridate magrittr purrr rlang stringr testthat tibble tidyr withr]; }; bamdit = derive2 { name="bamdit"; version="3.4.0"; sha256="0x7dl2f8qg8df07g4k692501rqn3q5zf12npx9zbbbvv7zb23rlf"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; - bamlss = derive2 { name="bamlss"; version="1.1-8"; sha256="1338g401rvpi5ch7z50hm5zp375zpqvwv6b3szn4llf7pfr316fr"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; }; + bamlss = derive2 { name="bamlss"; version="1.1-9"; sha256="1zlcgjd08adr5c8jk16aw98lp5bsr1c03f29lhr4nzxjyppfn98c"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; }; bamp = derive2 { name="bamp"; version="2.1.3"; sha256="0qzcndjdwbgiwyvc7ikb7jr0n7cmn78v56h5in22j24jjj740l2z"; depends=[abind coda]; }; bandit = derive2 { name="bandit"; version="0.5.1"; sha256="0zj98x4kwv8fr6j78vg0hzlsjd4w5l4nbazkpxqkn5yyd6g0v9h4"; depends=[boot gam]; }; bang = derive2 { name="bang"; version="1.0.1"; sha256="0m7p9gzspkyp40ir842ff4b1827w9rh7x49kpp3y4dpi83krqy5a"; depends=[bayesplot rust]; }; @@ -6196,7 +6221,7 @@ in with self; { bate = derive2 { name="bate"; version="0.1.0"; sha256="1jrf614g5699ygw73pda7dk79ydx57sc8wpq4vg51yy98arhidc2"; depends=[concaveman dplyr ggplot2 latex2exp magrittr purrr tidyselect vtable]; }; batman = derive2 { name="batman"; version="0.1.0"; sha256="0ccgx506p4iri23k2ikb8jmh04dp08w66785bv52iy8kd359h43f"; depends=[Rcpp]; }; batteryreduction = derive2 { name="batteryreduction"; version="0.1.1"; sha256="0j838q7063bplkzd50kmnxji80cgysfsq7m1qifv8z7a2zsh8c8g"; depends=[pracma]; }; - bayMDS = derive2 { name="bayMDS"; version="1.6"; sha256="1g4haskms28rn5wpkqn7rgaqpx5n4x3rz48n292l1vknb4mjwm8n"; depends=[ggplot2 ggpubr gridExtra progress Rcpp RcppArmadillo rgl shiny shinythemes]; }; + bayMDS = derive2 { name="bayMDS"; version="2.0"; sha256="1l5srpaichn598a3a9pj7pwp35jvbwb65d37l9ngvdq3rja8xm0s"; depends=[ggplot2 ggpubr progress Rcpp RcppArmadillo shiny shinythemes]; }; baycn = derive2 { name="baycn"; version="1.2.0"; sha256="1ykz1brs3mz94n86d5qaq25vf24j5adyzpddxqmn7qklbxxr6fh5"; depends=[egg ggplot2 gtools igraph MASS]; }; bayefdr = derive2 { name="bayefdr"; version="0.2.1"; sha256="178s559p1mgzp2b23plq3dcl5p0mg1d5cy6477knbaq711awzz3j"; depends=[assertthat cowplot ggExtra ggplot2 reshape2]; }; bayes4psy = derive2 { name="bayes4psy"; version="1.2.8"; sha256="0fmp88mrnmx4langd014l6jf06zmvwhclw4k0aw88v996hzv76bx"; depends=[BH circular cowplot dplyr emg ggplot2 mcmcse metRology Rcpp RcppEigen reshape rstan rstantools scales StanHeaders]; }; @@ -6208,11 +6233,12 @@ in with self; { bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.10"; sha256="1jb7jfyxp210pc8myv9lnwb55hy19d39m10kkhs5lyjwc2lv0401"; depends=[coda mvtnorm]; }; bayesImageS = derive2 { name="bayesImageS"; version="0.6-1"; sha256="0hz6ynvrhsxp097zswdlascza5n27cq4hfaqdc3r8b7crmh7lrim"; depends=[Rcpp RcppArmadillo]; }; bayesLife = derive2 { name="bayesLife"; version="5.0-3"; sha256="1dlaqp6qd6qi8p8ni3z7adjrsn44njzvngyga4a97crp3jfqpx7k"; depends=[bayesTFR car coda data_table hett wpp2019]; }; + bayesMRM = derive2 { name="bayesMRM"; version="2.3.0"; sha256="1am9valflwzs71vbfsz4glfzb4wnqsn4baryjk8srwkg37p5v2mm"; depends=[coda ggplot2 gridExtra rgl rjags shiny shinythemes]; }; bayesPO = derive2 { name="bayesPO"; version="0.3.1"; sha256="1n9m89lhdj0ng3570x23kcjyjv85bky0hqrs1sl7qxjdzxacsisl"; depends=[coda Rcpp RcppEigen RcppProgress]; }; bayesPop = derive2 { name="bayesPop"; version="9.0-1"; sha256="15lisc0wvijmdjgw7n5fadbz4g702v9rp748h5xp5r6qk32g3njx"; depends=[abind bayesLife bayesTFR data_table fields googleVis MortCast plyr reshape2 rworldmap wpp2012 wpp2019]; }; bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; - bayesSurv = derive2 { name="bayesSurv"; version="3.5"; sha256="0bk3yd7myycfbmfrw9nbsdzqf1qzmzdckgi951fdqllj3m037gyx"; depends=[coda smoothSurv survival]; }; - bayesTFR = derive2 { name="bayesTFR"; version="7.2-0"; sha256="0iax6z6c6vxgq5v1n357i8grdrbymgc7dv091bhdgrd7352cpqxc"; depends=[coda data_table lifecycle MASS mvtnorm wpp2019]; }; + bayesSurv = derive2 { name="bayesSurv"; version="3.6"; sha256="1y1jqd1c2rg4s73ffyq8wjkpq35321nzywigcgh6vkjpd8r8xhpx"; depends=[coda smoothSurv survival]; }; + bayesTFR = derive2 { name="bayesTFR"; version="7.2-2"; sha256="1z816jdva0z103bibx1c8f5yn5zbfxr4cfwh1wn29p6f1j6madcc"; depends=[coda data_table lifecycle MASS mvtnorm wpp2019]; }; bayesZIB = derive2 { name="bayesZIB"; version="0.0.4"; sha256="02n76vw38xd1p6j2r505mkbfvnwij7i5lx8x6w9hrsnh9q0dy6dw"; depends=[BH ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; bayesammi = derive2 { name="bayesammi"; version="0.1.0"; sha256="1vfcmk47x71c5akj3ppxzb74293pikspknkkv08f8p15v0chk7fs"; depends=[dplyr ggplot2 lme4 magrittr MASS mvtnorm rlang rstiefel scales tibble tidyr tmvtnorm]; }; bayesanova = derive2 { name="bayesanova"; version="1.5"; sha256="1h2z5r1ikrdi1j0cpzy3qdw28m1i6ddz6006amdnz2r3b0wivffm"; depends=[MCMCpack]; }; @@ -6231,13 +6257,13 @@ in with self; { bayeslm = derive2 { name="bayeslm"; version="1.0.1"; sha256="0mnzxzdz456qxfszl8vhnvb1875hxn8b57wi6dhr9g668da2zdin"; depends=[coda Rcpp RcppArmadillo RcppParallel]; }; bayesloglin = derive2 { name="bayesloglin"; version="1.0.1"; sha256="0j2ziahf6mwsz2gvb1azvdzlmszlpqgr5zqcqa68pxgq947sa2cs"; depends=[igraph]; }; bayeslongitudinal = derive2 { name="bayeslongitudinal"; version="0.1.0"; sha256="0g45ikpnbry1albb3asrzab5z3sy98yf74c64qn02d65xgafifwg"; depends=[LearnBayes MASS mvtnorm]; }; - bayesm = derive2 { name="bayesm"; version="3.1-4"; sha256="154glks7rsjkza0sfi1kj7wj727py9sl1ba6sswflwmwc9n226q6"; depends=[Rcpp RcppArmadillo]; }; + bayesm = derive2 { name="bayesm"; version="3.1-5"; sha256="18j7h32nq4hx1qnxfgfgz3q39q35lmvsq3im90xjkphyli60f8zj"; depends=[Rcpp RcppArmadillo]; }; bayesmeta = derive2 { name="bayesmeta"; version="3.2"; sha256="12lgbbvg6ywpr42ig8rfbki1fv9j294jr1nsq0gpr2khj4nw6npi"; depends=[forestplot metafor mvtnorm numDeriv]; }; bayesmix = derive2 { name="bayesmix"; version="0.7-5"; sha256="0s1a221vwia92pinja2r5b5abm4dhcrs81m4frqnf0522qh0y75f"; depends=[coda rjags]; }; bayesmove = derive2 { name="bayesmove"; version="0.2.1"; sha256="1l6i8qh7l53x0133gjc5jvri4vnnfviq9y3mcr1kfa5j84gfnmsf"; depends=[dplyr dygraphs furrr future ggplot2 leaflet lubridate magrittr MCMCpack progress progressr purrr Rcpp RcppArmadillo rlang sf shiny tictoc tidyr]; }; - bayesnec = derive2 { name="bayesnec"; version="2.0.2.4"; sha256="1jiyx9kmlabximslmp8m0f35qc7ngh59jxkf4im3qmqfn36b6q3m"; depends=[brms dplyr evaluate extraDistr formula_tools ggplot2 loo purrr rlang tidyr tidyselect]; }; + bayesnec = derive2 { name="bayesnec"; version="2.0.2.5"; sha256="0mfmpbfwysk298lc81g9yp29jj3ayral3p9fd8vf0vby3jkmppbc"; depends=[brms dplyr evaluate extraDistr formula_tools ggplot2 loo purrr rlang tidyr tidyselect]; }; bayesplay = derive2 { name="bayesplay"; version="0.9.2"; sha256="06i16a36b26p0r635bl37kvk7k083p970154yhkv80p7qc84n4sv"; depends=[gginnards]; }; - bayesplot = derive2 { name="bayesplot"; version="1.9.0"; sha256="0hqy597ang53phxnl084hak35ffqz9lw9hygax7370gpkjws908a"; depends=[dplyr ggplot2 ggridges glue posterior reshape2 rlang tibble tidyselect]; }; + bayesplot = derive2 { name="bayesplot"; version="1.10.0"; sha256="1zqka7lg7a6ccli1yzhk1n13vbrlp8m0kjxmykjqmkz438mvjk5v"; depends=[dplyr ggplot2 ggridges glue posterior reshape2 rlang tibble tidyselect]; }; bayesreg = derive2 { name="bayesreg"; version="1.2"; sha256="0yrx7y39xxmm0z4myj6ma24dkkhgcily5baxr6yf9balgvhd5wf4"; depends=[pgdraw]; }; bayesrules = derive2 { name="bayesrules"; version="0.0.2"; sha256="0a1a1aq91ary985xd0qqc1sgjlyfcrjh7ngzcy4f7j09a7ch3j4b"; depends=[dplyr e1071 ggplot2 groupdata2 janitor magrittr purrr rstanarm]; }; bayess = derive2 { name="bayess"; version="1.5"; sha256="1dhkyz3dz04rghl5fpjdz1n5d6v053km25hkq0ssdcvrbsms62c8"; depends=[combinat gplots mnormt]; }; @@ -6253,7 +6279,7 @@ in with self; { bbknnR = derive2 { name="bbknnR"; version="1.0.2"; sha256="018szrk8xskvill181jc3xji9gapn4z6ps1rfh7fgga9334726vs"; depends=[dplyr glmnet Matrix Rcpp RcppAnnoy reticulate Rtsne Seurat SeuratObject tidytable uwot]; }; bbl = derive2 { name="bbl"; version="1.0.0"; sha256="135i619lliy93dvgb7ymrcdh20y2b1j7s0y6awzcs3w0hbyd8j5z"; depends=[pROC RColorBrewer Rcpp]; }; bbmle = derive2 { name="bbmle"; version="1.0.25"; sha256="0mdj21q7k0fp4cj7la14vmcjmp49zqm57g7r6zrwmxpv0acwda46"; depends=[bdsmatrix lattice MASS Matrix mvtnorm numDeriv]; }; - bbotk = derive2 { name="bbotk"; version="0.6.0"; sha256="0ingnvfps46bysi8k2rqnvlh577bzk6fih6hcf20mjspdxx1as3v"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; + bbotk = derive2 { name="bbotk"; version="0.7.2"; sha256="1gw0rkbiv93ifl9110r9sr0p9g4vg7qc11mznmmjq0a5vzmqgpm9"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; bbreg = derive2 { name="bbreg"; version="2.0.2"; sha256="0mi2834v4cvrhvpnzkb4lgkqq993c3c1yzsxdnmny4p6yxw1q547"; depends=[expint Formula pbapply statmod]; }; bbricks = derive2 { name="bbricks"; version="0.1.4"; sha256="1hv4hvnns9vgl6c3n7kg3g9mfcp26ksps29hdl5nwi28cgkx80w2"; depends=[]; }; bbsBayes = derive2 { name="bbsBayes"; version="2.5.2"; sha256="0wczfhck5gvmpv7z4d5db3qmdincw8q5hhchn2y47mzvpwfvwzwg"; depends=[dplyr geofacet ggplot2 ggrepel jagsUI mgcv progress rappdirs sbtools sf stringr]; }; @@ -6265,7 +6291,7 @@ in with self; { bccp = derive2 { name="bccp"; version="0.5.0"; sha256="0g9yzqzf977rx97c77krdhl7c499r58xcbzx0nihk73143ynf17w"; depends=[pracma]; }; bcdata = derive2 { name="bcdata"; version="0.3.2"; sha256="0wmhk80r0d5k5f97r379g743a8r49jv7lj3i7fjaxb21az063ga6"; depends=[cli crul DBI dbplyr dplyr glue jsonlite leaflet leaflet_extras purrr readr readxl rlang sf tibble tidyselect xml2]; }; bcf = derive2 { name="bcf"; version="1.3.1"; sha256="04vjvzh8y1dfk6ms5zwbylbfalwngvyjbjcszx26v2fakdk990p7"; depends=[Rcpp RcppArmadillo]; }; - bcfrailph = derive2 { name="bcfrailph"; version="0.1.0"; sha256="0l5v3bc8xw71cj012sbmq1f0glg7m545jzqyg01gzl8kbgm3lbbj"; depends=[survival]; }; + bcfrailph = derive2 { name="bcfrailph"; version="0.1.1"; sha256="0qq885wfd7sr8cjxygw33l321q7jk4b6996p0j6inzlwycs8d6bc"; depends=[survival]; }; bcfrailphdv = derive2 { name="bcfrailphdv"; version="0.1.0"; sha256="06xzz5m4s5fp36j3saxmpw1p0bhh42cjd35cadwkk3vg836kj1na"; depends=[bcfrailph survival]; }; bcgam = derive2 { name="bcgam"; version="1.0"; sha256="1dg2fcjw8xal77irviiz260qpar2iqkjvi2k4qfm71jyq0ir0axk"; depends=[coda igraph nimble]; }; bcmaps = derive2 { name="bcmaps"; version="1.0.3"; sha256="1qr7jkybrg80pb0hhqmcpp66gkk5w74cjgyg7mnm9czz1j47wsl4"; depends=[bcdata httr jsonlite progress rappdirs sf xml2]; }; @@ -6283,7 +6309,7 @@ in with self; { bde = derive2 { name="bde"; version="1.0.1.1"; sha256="0idawsykqz7ybnnfcs0946wd1q8aaw1xdx2w3zzgjz7faxbvznb9"; depends=[ggplot2 shiny]; }; bdl = derive2 { name="bdl"; version="1.0.4"; sha256="01z6kv2wv67byyw49smri8zvi6mhwr5i8li4yhk96rrdjf4xwpxp"; depends=[dplyr ggplot2 ggpubr httr jsonlite magrittr progress purrr randomcoloR sf tibble tidyr tmap tmaptools]; }; bdlp = derive2 { name="bdlp"; version="0.9-2"; sha256="14fxwgcn3g6k1cdimgfp6zmsgqi4s7sh6kapnls229qiin2nijjl"; depends=[DBI GenOrd MASS MultiOrd rgl RSQLite stringdist]; }; - bdots = derive2 { name="bdots"; version="1.1.0"; sha256="02lgpgkhzyq9qaf18mzq2708ps00lsxm69apfsaq5m34zxkynq5z"; depends=[data_table ggplot2 gridExtra mvtnorm nlme]; }; + bdots = derive2 { name="bdots"; version="1.2.0"; sha256="0k1865vkg0s6jhw2k3w7gqw9v94rchfwpsbaf1cxbg0rpy1f0c0b"; depends=[data_table ggplot2 gridExtra mvtnorm nlme]; }; bdpar = derive2 { name="bdpar"; version="3.0.3"; sha256="17xrkizwdg1jz2glmmhlk153x75kylfv0pw7dn5x85m6sbah6zb1"; depends=[digest R6 rlist]; }; bdpopt = derive2 { name="bdpopt"; version="1.0-1"; sha256="1z7mdqklw3frsdzyhvx8s8wvblwm28fr1gca2yrivqjng0r47lx4"; depends=[coda rjags]; }; bdpv = derive2 { name="bdpv"; version="1.3"; sha256="0wcnmamqrbqwskgv2yhnxq2kb179n63c825y9hsl20rfca0ijh6m"; depends=[]; }; @@ -6332,7 +6358,8 @@ in with self; { betaBayes = derive2 { name="betaBayes"; version="1.0.1"; sha256="1a7ng6ym47scgj47frrhs76r6ipq6mhgf3ivbg2npqpg7hjcz2ci"; depends=[betareg Rcpp RcppArmadillo]; }; betaSandwich = derive2 { name="betaSandwich"; version="1.0.2"; sha256="035rkz27c156kwaibz0jrhfrdfvxv20fcynqgflxll62n4zhw010"; depends=[]; }; betacal = derive2 { name="betacal"; version="0.1.0"; sha256="19wgpgf9yhckl9qx9v24f4yh055wfalphcxwm7lg68px6ap2pxl9"; depends=[]; }; - betafunctions = derive2 { name="betafunctions"; version="1.8.0"; sha256="0naydz3l37pd1jciachi5ra3pv07fhjpfhbfqvf3qgqvnmvanbwl"; depends=[]; }; + betaclust = derive2 { name="betaclust"; version="1.0.0"; sha256="1h3fcvs22spxhphcfg7zl75cpa5yycyl2yy0bgyy0hwkwh8cwpza"; depends=[doParallel foreach ggplot2 plotly scales]; }; + betafunctions = derive2 { name="betafunctions"; version="1.8.1"; sha256="0xvg5d04icsb0v9f7gnvpw345sik8xla5p55cdpbm8c3wwfk1d1m"; depends=[]; }; betapart = derive2 { name="betapart"; version="1.5.6"; sha256="08rphgdqxgkih70kqnn7x1hkahl309pa363zbqsdwk0lmfq2azkh"; depends=[ape doSNOW fastmatch foreach geometry itertools picante rcdd snow]; }; betaper = derive2 { name="betaper"; version="1.1-2"; sha256="0gh5xjimg0wgv626g3y34mvgrji2aylnm89iwadg7d6g4s457ynp"; depends=[vegan]; }; betareg = derive2 { name="betareg"; version="3.1-4"; sha256="00c1l5ah74vf7ljpja4iwyf9cwcvb1c835hmc98jp2x6jrh9h1ji"; depends=[flexmix Formula lmtest modeltools sandwich]; }; @@ -6343,7 +6370,7 @@ in with self; { beyondWhittle = derive2 { name="beyondWhittle"; version="1.1.3"; sha256="0hx1j6vgq25qk966wkc8pq0y6whxqnp1nglm3d4majqp55iqi1lx"; depends=[BH forecast ltsa MASS Rcpp RcppArmadillo]; }; bezier = derive2 { name="bezier"; version="1.1.2"; sha256="1vw5128v8h973xwa1fdm9cw2jvrldj87nd55lddlp3qsz3ag4br6"; depends=[]; }; bfast = derive2 { name="bfast"; version="1.6.1"; sha256="1vjklk7d9b0q7j348aqvspm7rn80bh06hz66r2z1qs9436ppkx5a"; depends=[forecast Rcpp Rdpack strucchangeRcpp zoo]; }; - bfp = derive2 { name="bfp"; version="0.0-45"; sha256="1vgzf3nxavnydbfcg539xb0kr220yqd053697yhq84j0g2an10xg"; depends=[Rcpp]; }; + bfp = derive2 { name="bfp"; version="0.0-46"; sha256="129pnd3hkaan26dxjs9qp49yhbq9r7mhmp780x6yzcdn74xzwfnw"; depends=[Rcpp]; }; bfsMaps = derive2 { name="bfsMaps"; version="0.9.8"; sha256="00lp22bmhww7f95bpy4di4fk3r5gnscqcvb9ha7d4gygqy0dzskv"; depends=[DescTools maptools rgdal rgeos rlang sp spdep]; }; bfsl = derive2 { name="bfsl"; version="0.2.0"; sha256="10z3w1fk4va2ajvpnqp0llgw4a047iaya6xi57if1a7jd7r1jxfh"; depends=[generics]; }; bfw = derive2 { name="bfw"; version="0.4.2"; sha256="0qgq47axa0r9653d1sjm00fvfx49v28id5sngwyrgkppcngmbg9p"; depends=[circlize coda data_table dplyr ggplot2 magrittr MASS officer plyr png runjags rvg scales]; }; @@ -6359,7 +6386,7 @@ in with self; { bhpm = derive2 { name="bhpm"; version="1.7"; sha256="0fhk2gmghibf7la864dzm19bm76525gzbj03vw0y0zwbv9shbpcp"; depends=[coda]; }; biClassify = derive2 { name="biClassify"; version="1.3"; sha256="14z3kmpmlvnkjwpjspajdfx5951cmck4binszzdd7nqbai5f1dwv"; depends=[DAAG expm fields MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; bib2df = derive2 { name="bib2df"; version="1.1.1"; sha256="0d57883df774qqwpssmly3f1gci32yc5sgwc3x8f2rjih23s1nf6"; depends=[dplyr httr humaniformat stringr]; }; - biblio = derive2 { name="biblio"; version="0.0.6"; sha256="079p0qzmi3sg2ff7ln9lg65lf7r402rldqfpxmfvckhm9s6b29b4"; depends=[stringr yamlme]; }; + biblio = derive2 { name="biblio"; version="0.0.7"; sha256="1mknfrkpapa88hlnzssv4k79xx9lg0ab34v88yhbnkm1xmmwrwq8"; depends=[stringr yamlme]; }; bibliometrix = derive2 { name="bibliometrix"; version="4.0.1"; sha256="00c0dfnv989sf206qsh6gk2s0h73xqq0vd2a9sr2zh5rxf9x9c24"; depends=[bibliometrixData dimensionsR dplyr DT factoextra FactoMineR forcats ggplot2 ggrepel igraph Matrix openxlsx plotly pubmedR RColorBrewer readr readxl rscopus shiny SnowballC stringdist stringr tidyr tidytext]; }; bibliometrixData = derive2 { name="bibliometrixData"; version="0.3.0"; sha256="0dkg5g9il95w9glzvhjdgp8z30prydspvpz5bb403vaizykwv9kl"; depends=[]; }; biblionetwork = derive2 { name="biblionetwork"; version="0.1.0"; sha256="0nhx9bk7r5l0bvj98clnmwf53ihghf48zai4nj6pcgr2rb69fvjj"; depends=[data_table Rdpack]; }; @@ -6391,13 +6418,13 @@ in with self; { bigmatch = derive2 { name="bigmatch"; version="0.6.4"; sha256="1a3qiljarnv14dmpr5g2nfxzaf4wmw88md4kjrlrlgxcgmijlwm6"; depends=[liqueueR mvnfast plyr rcbalance]; }; bigmds = derive2 { name="bigmds"; version="2.0.1"; sha256="05sph85z4c4fiwd429hx9chgd7rsn48irr168yy1dj9daaqm49pl"; depends=[]; }; bigmemory = derive2 { name="bigmemory"; version="4.6.1"; sha256="0hainqkm7cs8gjm42vkpdrr0284smsbwdfackp34yv7dhxy1avmm"; depends=[BH bigmemory_sri Rcpp uuid]; }; - bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.3"; sha256="0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"; depends=[]; }; + bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.6"; sha256="03468ak0lgd9m0f7synxms2zzr8f7n2nm1gmhcraj3nfcv4nmyiv"; depends=[]; }; bignum = derive2 { name="bignum"; version="0.3.0"; sha256="0r7vmix40646vdiw9mzzbz5ihrr08rldnpvy8l9ilp73cn9189mj"; depends=[BH cpp11 rlang vctrs]; }; bigparallelr = derive2 { name="bigparallelr"; version="0.3.2"; sha256="14rkcig4j93c231sfm43331ykmvxjx2fiz5nhblj2rfzkxli4css"; depends=[bigassertr doParallel flock foreach parallelly RhpcBLASctl]; }; - bigreadr = derive2 { name="bigreadr"; version="0.2.4"; sha256="0650mbgbzl2582d02ma3kd8iqdimjajk9gnx70hdjl489q15w80f"; depends=[bigassertr data_table parallelly Rcpp]; }; + bigreadr = derive2 { name="bigreadr"; version="0.2.5"; sha256="15wy5rphk2l59k8fk68a15xsvy8nxj1srnc2c86i7y5ym04a856k"; depends=[bigassertr data_table parallelly Rcpp]; }; bigrquery = derive2 { name="bigrquery"; version="1.4.1"; sha256="1rcz1zq0azrrchhxz4b0g4m9c3ymp4pasi7ji1nvx25w5x41sdmv"; depends=[assertthat bit64 brio curl DBI gargle glue httr jsonlite lifecycle prettyunits progress rapidjsonr Rcpp rlang tibble]; }; bigsimr = derive2 { name="bigsimr"; version="0.11.2"; sha256="1mygsc865hki6z2bilvbnymk8r4p73ams7iah9qpqi0ap6cqqz8p"; depends=[JuliaCall]; }; - bigsnpr = derive2 { name="bigsnpr"; version="1.11.4"; sha256="0jvvwrpbf74w999ifm721ckhp42ywffbx3ij6xqg1v9gvzpgni4c"; depends=[bigassertr bigparallelr bigreadr bigsparser bigstatsr bigutilsr data_table doRNG foreach ggplot2 magrittr Matrix Rcpp RcppArmadillo rmio roptim runonce vctrs]; }; + bigsnpr = derive2 { name="bigsnpr"; version="1.11.6"; sha256="0d7ysy4zwv4fkivn05lfi1bwdix6ms1b0h9n4nl3qbyangfcz52a"; depends=[bigassertr bigparallelr bigreadr bigsparser bigstatsr bigutilsr data_table doRNG foreach ggplot2 magrittr Matrix Rcpp RcppArmadillo rmio roptim runonce vctrs]; }; bigsparser = derive2 { name="bigsparser"; version="0.6.1"; sha256="0b6hh1rvi7qnz9kfnckjglcv240inpnc5f50cyrpfq5gdyppzhy1"; depends=[bigassertr Matrix Rcpp RcppEigen rmio]; }; bigsplines = derive2 { name="bigsplines"; version="1.1-1"; sha256="1kf04p2lglzdi1fdryk27nmj2a2jca2ii7ki8vak93sq21isb179"; depends=[quadprog]; }; bigstatsr = derive2 { name="bigstatsr"; version="1.5.12"; sha256="1wj169j91yjlb12dzy80q7rvi102l7fhlzfvc93rxifq2w3px9x8"; depends=[bigassertr bigparallelr cowplot foreach ggplot2 ps Rcpp RcppArmadillo rmio RSpectra tibble]; }; @@ -6439,7 +6466,7 @@ in with self; { binsegRcpp = derive2 { name="binsegRcpp"; version="2022.7.21"; sha256="15qiqzwy64xz6pbwy8mvw6xnmz52bjqbc0p6l5gsfkh6g489xjb0"; depends=[data_table Rcpp]; }; binseqtest = derive2 { name="binseqtest"; version="1.0.3"; sha256="0661a2bqmv6bckq23c6m04ggwrp8z10lfgjg9dgkz4bfxsd297gs"; depends=[clinfun]; }; binsmooth = derive2 { name="binsmooth"; version="0.2.2"; sha256="1sidv8ra377glaacib1j4ksg5bg759hk7h6fadrfzip3hgxgjg9x"; depends=[ineq pracma triangle]; }; - binspp = derive2 { name="binspp"; version="0.1.24"; sha256="0k4ljmw5snjvyad8vgx370q91v7yj39c479q9jzld1brh2gpasr9"; depends=[cluster mvtnorm Rcpp RcppArmadillo RcppEigen spatstat spatstat_core spatstat_geom spatstat_random VGAM]; }; + binspp = derive2 { name="binspp"; version="0.1.26"; sha256="0ah002lvimniwmwgn2syw9saxgzpdhs5vins0f3kb98p5k3gdxqk"; depends=[cluster mvtnorm Rcpp RcppArmadillo RcppEigen spatstat spatstat_geom spatstat_model spatstat_random VGAM]; }; binsreg = derive2 { name="binsreg"; version="0.7"; sha256="1qxf5096vzf2j9d7yya0pr1hgxgkxm5llvz5ddyf0hqp22cjcsf7"; depends=[ggplot2 matrixStats quantreg sandwich]; }; binst = derive2 { name="binst"; version="0.2.1"; sha256="09kzk7n1j9nzgyijwirzk33z6p6hc67zkd05hv1i9qfijy31gci4"; depends=[rpart]; }; bio_infer = derive2 { name="bio.infer"; version="1.3-6"; sha256="1hs11c9qpdsl1awgk3b34mcsnr8g1xpg3zd9dlrqrz6ppdqkgxmn"; depends=[]; }; @@ -6452,18 +6479,18 @@ in with self; { bioassays = derive2 { name="bioassays"; version="1.0.1"; sha256="1y32wxkv14l7r0f35y4hxxxh3zpw2gd4hsjmkajhmzmnvg5jdw78"; depends=[dplyr ggplot2 magrittr nplr reshape2 rlang]; }; bioclim = derive2 { name="bioclim"; version="0.3.0"; sha256="1qiz7bwy44xlgj52cy46bg762fg3llgzzn9a2bclyx42v12z8p6q"; depends=[berryFunctions ggplot2 reshape2 rmarkdown terra]; }; biocompute = derive2 { name="biocompute"; version="1.1.1"; sha256="102n8y83z8568lwil2fb28wrjkymwmw9rzvk0a4zgsx5a3l7wl01"; depends=[cli crayon curl digest httr jsonlite jsonvalidate magrittr rmarkdown stringr uuid yaml]; }; - biodosetools = derive2 { name="biodosetools"; version="3.6.0"; sha256="06i6vg0n98x91j8mkh0mbh4m7a34ghr22x6msrhdig0xh522ia5z"; depends=[bsplus cli config dplyr ggplot2 golem htmltools magrittr MASS maxLik mixtools msm pkgload rhandsontable rlang rmarkdown shiny shinydashboard shinyWidgets tidyr]; }; + biodosetools = derive2 { name="biodosetools"; version="3.6.1"; sha256="013nqdqrv5h3swzqss2kazsp06wrs57zri3aaidy92wrd6v24bsh"; depends=[bsplus cli config dplyr ggplot2 golem magrittr MASS maxLik mixtools msm rhandsontable rlang rmarkdown shiny shinydashboard shinyWidgets tidyr]; }; biogas = derive2 { name="biogas"; version="1.23.2"; sha256="05g6nyi872skvr34kw5c71ggnnjc3fv95imc327yjqhmqmwx3m19"; depends=[]; }; biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; }; biogeom = derive2 { name="biogeom"; version="1.2.1"; sha256="1hwb99b0yrm6a11jkas0fikcbamzi41a4j5j9qnp474bkj9a5jd2"; depends=[spatstat_geom]; }; biogram = derive2 { name="biogram"; version="1.6.3"; sha256="1y7yaa6xwv11b6a4qf4qb3d7rsz0yiiq1k5mb0dbm3avydnl9c4b"; depends=[combinat entropy partitions slam]; }; - biogrowth = derive2 { name="biogrowth"; version="1.0.0-3"; sha256="0hyx6j1lj1igm0c2pgjbx3gk77q8x2jlcpslky7p9fplc92baig6"; depends=[cowplot deSolve dplyr FME formula_tools ggplot2 lamW lifecycle MASS purrr rlang tibble tidyr]; }; + biogrowth = derive2 { name="biogrowth"; version="1.0.1"; sha256="0hlpnx86bfk16mw5yhrwlf8qz9f52wx88n5iy3lw6qhq65a6ja2f"; depends=[cowplot deSolve dplyr FME formula_tools ggplot2 lamW lifecycle MASS purrr rlang tibble tidyr]; }; bioimagetools = derive2 { name="bioimagetools"; version="1.1.8"; sha256="1b7nxjis0p1hiv3w0cr3cyc2xz6sn9qbpssvlp2d7c5gm8x2gnj7"; depends=[EBImage httr tiff]; }; bioinactivation = derive2 { name="bioinactivation"; version="1.2.3"; sha256="0gz1bbakf6b23jsbvrr8314yxajxcr1akm5srgm883lrf1p5ax13"; depends=[deSolve dplyr FME ggplot2 lazyeval MASS purrr rlang]; }; biokNN = derive2 { name="biokNN"; version="0.1.0"; sha256="113lynbxmv88ycvbsq9drn2f75md7yajhicfw8qd8l6lawiq1fqc"; depends=[cluster desc dplyr ggplot2 lme4 magrittr mice mitml tidyr]; }; biolink = derive2 { name="biolink"; version="0.1.7"; sha256="1i9aisvb3lvljird89fy9fx7h3s1wi6dpilycbynqyhz8xqnnszj"; depends=[DBI glue memoise rentrez RMySQL xml2]; }; biomartr = derive2 { name="biomartr"; version="1.0.2"; sha256="0hr7wks88lbfcqzjzm4x265dk4lpmc3i2ndp7xcrx8ssj76wrmkz"; depends=[biomaRt Biostrings curl data_table downloader dplyr fs httr jsonlite philentropy purrr R_utils RCurl readr stringr tibble withr XML]; }; - biometryassist = derive2 { name="biometryassist"; version="1.1.1"; sha256="0r96qkhs05czdvx89ndx3z4yz35va3653waql8ygfhn65r9gzis9"; depends=[agricolae cowplot curl farver ggplot2 lattice multcompView pracma predictmeans rlang scales stringi withr]; }; + biometryassist = derive2 { name="biometryassist"; version="1.1.2"; sha256="176j3qvvhg9qj87zqzxyc95npjwrv346lsa8f0plgp0llk9ka8vj"; depends=[agricolae cowplot curl farver ggplot2 lattice multcompView pracma predictmeans rlang scales stringi withr]; }; biomod2 = derive2 { name="biomod2"; version="4.1-2"; sha256="1vwcbikpd8x7i9jy6g20wdwxpf0d6n2sbj6npbadj75mxmda0r6c"; depends=[abind data_table dplyr earth foreach gbm ggplot2 MASS maxnet mda nnet PresenceAbsence pROC randomForest raster reshape reshape2 rpart sp]; }; bionetdata = derive2 { name="bionetdata"; version="1.1"; sha256="14ll1m85pcr0xycczk1y9jxiqxfy5daiigfhqn4f6sfk2afy07yr"; depends=[]; }; bios2mds = derive2 { name="bios2mds"; version="1.2.3"; sha256="1k0r3fnkzfczx3wp3m8zpndk6gxca7idsp0z13rw84zjrgqaw6jm"; depends=[amap cluster e1071 rgl scales]; }; @@ -6471,7 +6498,7 @@ in with self; { bioseq = derive2 { name="bioseq"; version="0.1.4"; sha256="0m93s7vrpd392w2mcv3sdf5kcmpn1671ksplx1fiz7wdakck9fxq"; depends=[ape crayon dplyr pillar readr rlang stringdist stringi stringr tibble vctrs]; }; biosignalEMG = derive2 { name="biosignalEMG"; version="2.1.0"; sha256="0bbkrfqkmks4z8c7rh0k43lvm71vn3fzrw3kpj012ym77whwkvay"; depends=[signal]; }; biospear = derive2 { name="biospear"; version="1.0.2"; sha256="10y4hbncwiqpxzqvzjrmfgp804zczdgvwpjcj0dzaa0sx1njdzja"; depends=[cobs corpcor devtools glmnet grplasso MASS Matrix mboost pkgconfig plsRcox pROC PRROC RCurl survAUC survival]; }; - biostat3 = derive2 { name="biostat3"; version="0.1.6"; sha256="12i8ki1yair4sycfcwrhl10khfxzx5q2slzqjwcrqfxg69q8ak4l"; depends=[MASS muhaz survival]; }; + biostat3 = derive2 { name="biostat3"; version="0.1.8"; sha256="19qsg42nyisqfxl5y9ayd6hj82plnnqvryqkwdd6nfascn0zw44y"; depends=[MASS muhaz survival]; }; biosurvey = derive2 { name="biosurvey"; version="0.1.1"; sha256="1hhch5qagn86pcn43qlmv0azfbjc9yv58yp9v1p5s6r5ffxkgs95"; depends=[diptest doParallel foreach ks maps picante raster rgdal rgeos sp spatstat_geom vegan]; }; biotic = derive2 { name="biotic"; version="0.1.2"; sha256="1p18jkdd263dgk90626n9awkj6m4zn1n7897596fzrzrahksa978"; depends=[]; }; biotools = derive2 { name="biotools"; version="4.2"; sha256="1dyy9mk2afjbc8g1qygy6h1aksbhndm53c4sb5mfzriydl03ibxv"; depends=[boot MASS]; }; @@ -6487,7 +6514,7 @@ in with self; { bisectr = derive2 { name="bisectr"; version="0.1.0"; sha256="1vjsjshvzj66qqzg32rviklqswrb00jyq6vwrywg1hpqhf4kisv7"; depends=[devtools]; }; bisque = derive2 { name="bisque"; version="1.0.2"; sha256="0zp2r1vg29q2ds34hhyjv9pz761mi0qncx9p4ilwnfd5yj9pmzwq"; depends=[foreach itertools mvQuad Rcpp RcppArmadillo RcppEigen]; }; bistablehistory = derive2 { name="bistablehistory"; version="1.1.1"; sha256="0lk4kbxrnkr66cnyalzl2m18wwzf4y23r016nl1n52209vviql95"; depends=[BH boot dplyr future glue loo magrittr purrr Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; - bit = derive2 { name="bit"; version="4.0.4"; sha256="0s7isadibxp2wr62r5cpbyh9z31sczzfz4j3rm7gxgjfpqgq8174"; depends=[]; }; + bit = derive2 { name="bit"; version="4.0.5"; sha256="1g5zakrzkhrqh3d7p1zka6zzzw11rdlbrvxsh05s7dkli1m57wph"; depends=[]; }; bit64 = derive2 { name="bit64"; version="4.0.5"; sha256="0y0m7q1rwam1g88cjx7zyi07mj5dipxd9jkl90f294syx8k6ipr5"; depends=[bit]; }; bite = derive2 { name="bite"; version="0.3"; sha256="00sph3pdbb9p21s3263ni4by2ivvya1sbjm9wvwx1rwjr4f31jps"; depends=[ape coda MASS phytools sm vioplot xml2]; }; bitmexr = derive2 { name="bitmexr"; version="0.3.2"; sha256="19nvrq75j2b2w6frz73rq3hx8bgwwrxjqfjgj10kdvc7gw8vx7mx"; depends=[attempt curl digest dplyr httr jsonlite lubridate magrittr progress purrr rlang stringr]; }; @@ -6500,7 +6527,7 @@ in with self; { biwavelet = derive2 { name="biwavelet"; version="0.20.21"; sha256="0v7arwmng2i22svj836i57q8by9x5pghjv7d35g7r35wakrm8jyx"; depends=[fields foreach Rcpp]; }; biwt = derive2 { name="biwt"; version="1.0.1"; sha256="0gg381jhwdc0kc8v0yn7wcgjkpn8dfnnn20m5ycjv66jlk2jhdcw"; depends=[MASS robustbase]; }; bizdays = derive2 { name="bizdays"; version="1.0.12"; sha256="0645x590vzaa2a7srhjpg9s9g613z4yxbbrsnncflr2lmkky44xl"; depends=[jsonlite]; }; - bizicount = derive2 { name="bizicount"; version="1.2.0"; sha256="0bmp2x2wdqy0dsax375fl57m6w6xjapnn6rhkrvrmc8wj1cklvqw"; depends=[DHARMa Formula MASS numDeriv pbivnorm rlang texreg]; }; + bizicount = derive2 { name="bizicount"; version="1.3.0"; sha256="10alimshxvbd755w655b0h1zwi2nakjinf4nlhiyz9mw2sclaars"; depends=[DHARMa Formula MASS numDeriv pbivnorm rlang texreg]; }; bjscrapeR = derive2 { name="bjscrapeR"; version="0.1.0"; sha256="18chbgiwify272iqf0w4vsqh73wbk12d8m2awc5hbnfqblz3phwd"; depends=[dplyr glue readr tibble]; }; bkmr = derive2 { name="bkmr"; version="0.2.2"; sha256="1bzr39a53p1xkq2fi2fphv2rpsml2z25xb1ycs63p3y7qis9zlky"; depends=[dplyr fields magrittr MASS nlme tibble tidyr tmvtnorm truncnorm]; }; bkmrhat = derive2 { name="bkmrhat"; version="1.1.3"; sha256="0l575dav5wyia37vm5j1dyljgk0k6l1hwfwsqr2gq3sb0iim4my4"; depends=[bkmr coda data_table future rstan]; }; @@ -6513,6 +6540,7 @@ in with self; { blavaan = derive2 { name="blavaan"; version="0.4-3"; sha256="0x0vx0gj0z1i1mczvi2j2g2zmdals7wz1ja0jcbpyzmb5arzgyd9"; depends=[bayesplot BH coda future_apply lavaan loo Matrix mnormt nonnest2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tmvnsim]; }; blendedLink = derive2 { name="blendedLink"; version="1.0"; sha256="19d1pnjag89jjvkl5a6wx531qjqp4cv5jk95md6jby27yr52r8vp"; depends=[]; }; blender = derive2 { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; }; + blindrecalc = derive2 { name="blindrecalc"; version="1.0.0"; sha256="0ymcmakk8wwg72rcwj1nankw3bbdp29mr5vymaw04padwsrmbf20"; depends=[Rcpp]; }; blink = derive2 { name="blink"; version="1.1.0"; sha256="053nw592sglzh6fgz7hj8ra6q7lqs83hhv14kcgs67b56q8a3crb"; depends=[plyr stringdist]; }; bliss = derive2 { name="bliss"; version="1.0.4"; sha256="02kln40z10wngydn7y4x5shd2dff74gb340nhagf49k8ql9p78xw"; depends=[MASS Rcpp RcppArmadillo]; }; blm = derive2 { name="blm"; version="2022.0.0.1"; sha256="0pmh3fw5iv9xhr08gji1q5vcaaai5s2qq40wisqdrqn5xhk9rh2h"; depends=[]; }; @@ -6523,11 +6551,12 @@ in with self; { blockForest = derive2 { name="blockForest"; version="0.2.5"; sha256="11lfwh5skzbvyyh25hk0sxk21833ah9f8zybvqsn3m9109c9whsw"; depends=[Matrix Rcpp RcppEigen survival]; }; blocklength = derive2 { name="blocklength"; version="0.1.5"; sha256="06d62hgkf2pphr6h3nba1b5r0izr45bvmrymrzq0lyc7xiwrh6na"; depends=[tseries]; }; blockmatrix = derive2 { name="blockmatrix"; version="1.0"; sha256="14k69ly4i8pb8z59005kaf5rpv611kk1mk96q6piyn1gz1s6sk6r"; depends=[]; }; - blockmodeling = derive2 { name="blockmodeling"; version="1.1.3"; sha256="19mxmxsnl6rrh85p0sak91vcaw4dz2cnm70hdzfwnvdrr695yw2z"; depends=[Matrix]; }; + blockmodeling = derive2 { name="blockmodeling"; version="1.1.4"; sha256="1f6jx8pwp3pnhs4wwxdrd1ska3h4w2423dpd11illxfajvnigkk9"; depends=[Matrix]; }; blockmodels = derive2 { name="blockmodels"; version="1.1.5"; sha256="1h2g13yp8xhkw9icl5bi1nkc0qfqkqhlhdqbcsp0246g9amssci9"; depends=[digest Rcpp RcppArmadillo]; }; blockrand = derive2 { name="blockrand"; version="1.5"; sha256="0bic3b8l7mp2hpwd8k1diwy6a4lj92i7s5k20i2wy8kw0c74jwfh"; depends=[]; }; blocksdesign = derive2 { name="blocksdesign"; version="4.9"; sha256="1kr3fxs8vgc96clhx5ml11jkwll1rg9gf16xg93q14jpg4hg0j9h"; depends=[plyr PolynomF]; }; - blogdown = derive2 { name="blogdown"; version="1.13"; sha256="1ag7hidz43zd3kdmm25v7x6w02v0lzw7l4hspwh4zrvigar3dbhc"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; + blocs = derive2 { name="blocs"; version="0.1.0"; sha256="18bajdr56d60fp1irgc3iyq758c1gwprvm3v9cvx9zvx9kdgnpa3"; depends=[collapse dplyr ggplot2 ks mgcv rlang tibble]; }; + blogdown = derive2 { name="blogdown"; version="1.15"; sha256="0299pf06ls16cyk5f3k73zwp2g094zgafdja9ibmwcpv64qmb1hs"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; blorr = derive2 { name="blorr"; version="0.3.0"; sha256="1ynvg6ar7c7p01225q9czy4gxks0p1vw3sx207l7vzqxw20wb1bn"; depends=[car data_table ggplot2 gridExtra lest Rcpp]; }; blrm = derive2 { name="blrm"; version="1.0-2"; sha256="1lk7s7myxflr9as88944kvg8vn7m2ansg2caizr6h4d3690vr4m7"; depends=[boot mvtnorm openxlsx reshape2 rjags shiny]; }; blsR = derive2 { name="blsR"; version="0.4.0"; sha256="00xip7j9zkv62dkw2gcfiivaws0pri3jijcppb5xyz681k2jqdpz"; depends=[dplyr httr purrr readr rlang stringr]; }; @@ -6542,13 +6571,12 @@ in with self; { bmggum = derive2 { name="bmggum"; version="0.1.0"; sha256="1r0j5gklmknyan68nc3vfn96ck414v75547486ic70v2pdr3xnpf"; depends=[BH edstan ggplot2 GGUM loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; bmixture = derive2 { name="bmixture"; version="1.7"; sha256="09ahs2dwrbqhk4aki9291v5lr5fa9mvi087zrqjmv2057ypyv2n5"; depends=[BDgraph]; }; bmlm = derive2 { name="bmlm"; version="1.3.12"; sha256="0lzayz56knc1bj9r985kz91bfcjacs3zzz64b9dgbj0y2l7gd0xa"; depends=[BH ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - bmotif = derive2 { name="bmotif"; version="2.0.2"; sha256="1zy153z7kasfivj0mvrkyn96s0sgdp34w4pdjpcvfnym3lr02f0m"; depends=[gtools Rcpp reshape2 tensor]; }; bmp = derive2 { name="bmp"; version="0.3"; sha256="0jd67r11bn98hjwgyr6gas423787xy7ji2hq7ay80blkkcj91xxx"; depends=[]; }; bmrm = derive2 { name="bmrm"; version="4.1"; sha256="1brdd5mhr5282wkdc62lgsqcxw077p69rknjk7fjcs282ahcik2s"; depends=[LowRankQP lpSolve matrixStats Rcpp]; }; bmscstan = derive2 { name="bmscstan"; version="1.2.1.0"; sha256="05w6pz0mwqighhdl36f2ya1b4dw0xdhpfcbq6saw73ag5hvl57i9"; depends=[bayesplot ggplot2 LaplacesDemon logspline loo rstan]; }; bmstdr = derive2 { name="bmstdr"; version="0.3.0"; sha256="00msf9x6b1zg4y8xbyjz6yynvhl17krxlxgyy7ip9nnwsnkwlq6g"; depends=[BH CARBayes CARBayesST ggplot2 ggpubr inlabru MCMCpack mnormt Rcpp RcppEigen Rdpack rstan spBayes spTDyn spTimer StanHeaders]; }; bnClustOmics = derive2 { name="bnClustOmics"; version="1.1.1"; sha256="1pmg0q5jay8wkn24yv3j7xrdd8k6y8yjq6crjxg22yzfbbb0ws8g"; depends=[BiDAG clue graph gRbase mclust plotrix RBGL RColorBrewer]; }; - bnclassify = derive2 { name="bnclassify"; version="0.4.6"; sha256="00akv7mg4mn7kk98r6ja3yx9h822b8hnv1k890i8kwsra3c2qgid"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; + bnclassify = derive2 { name="bnclassify"; version="0.4.7"; sha256="010447r21i5r2nk843v8dmfncqgmp4yf71ahcrppqv8vxfywcg6i"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; bndovb = derive2 { name="bndovb"; version="1.1"; sha256="16mvkvwnx61jrvraagvxf56pvmf5klm8lnkqq4s5y2z92kd0clgp"; depends=[dplyr factormodel MASS nnet np pracma]; }; bnlearn = derive2 { name="bnlearn"; version="4.8.1"; sha256="1b6k9jjwfxll7w3gnwnx8r912f9kfrxikhq8143f53m3ngq1ng32"; depends=[]; }; bnma = derive2 { name="bnma"; version="1.5.0"; sha256="0h7nk28ny4capnji1j5m2kzsc7l8a1z7icx0iak87pk4abzqlzmm"; depends=[coda ggplot2 igraph rjags]; }; @@ -6557,7 +6585,7 @@ in with self; { bnpa = derive2 { name="bnpa"; version="0.3.0"; sha256="0qsxk47i7q4d8hbs2xj5k5sf8bqyzhq7rbj4y7w8ljprznlydgl9"; depends=[bnlearn fastDummies lavaan Rgraphviz semPlot xlsx]; }; bnpsd = derive2 { name="bnpsd"; version="1.3.13"; sha256="0wnbsz5c52pglycykzkd5lsnxfkjqva0xhwnb4kz7x1zd8vbd1sl"; depends=[ape nnls]; }; bnspatial = derive2 { name="bnspatial"; version="1.1.1"; sha256="1drm9ia4lr80wahbbn9xrw658ppmgxm4iadwv77jz1x786dda2n1"; depends=[doParallel foreach gRain gRbase raster rgdal sf]; }; - bnstruct = derive2 { name="bnstruct"; version="1.0.13"; sha256="0naclrnhnqc87w6nw0yl3rhslqw3784hqqvmyfdg2508k9x913g3"; depends=[bitops igraph]; }; + bnstruct = derive2 { name="bnstruct"; version="1.0.14"; sha256="1igdr538d2nfx3ap13y6p6wb6jfvb3hcg80fapjvnzc2304sk95p"; depends=[bitops igraph]; }; bnviewer = derive2 { name="bnviewer"; version="0.1.6"; sha256="036jmypxg2ciiz388f90vm73l9djhpi6gzp1ibn9l0x3d072r7zz"; depends=[assertthat bnlearn caret e1071 igraph shiny visNetwork]; }; boa = derive2 { name="boa"; version="1.1.8-2"; sha256="04lhqk5qfvaz1jk90glr2yi5vq7cdy0w8m6g2lnzk359l9y41zhp"; depends=[]; }; bodenmiller = derive2 { name="bodenmiller"; version="0.1.1"; sha256="0rdbk3f95iw4352fl9d81ir503q072chbb4hn1k12sp1wjc3apid"; depends=[]; }; @@ -6566,13 +6594,13 @@ in with self; { bolasso = derive2 { name="bolasso"; version="0.2.0"; sha256="1fbd39jyxq0zfbybrzzwnyql2w8hf2b9133jj0nl99d1326wr7dh"; depends=[future_apply gamlr ggplot2 glmnet Matrix progressr Rdpack tibble]; }; bold = derive2 { name="bold"; version="1.2.0"; sha256="0r54ylxgmq9qnh1f36k4hafh80n86ibk4a994f8b1rnb9bq9f5cg"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; }; bondAnalyst = derive2 { name="bondAnalyst"; version="1.0.1"; sha256="0bygaldjgxbjqjnlgs64vdayr7kp6sjl6qffdywxpi7v0yfi072a"; depends=[Rdpack]; }; - bonsai = derive2 { name="bonsai"; version="0.2.0"; sha256="0haqdvvh5ydyzifr9mzyyfa2sj6n9kfvj5w5wj815n9p0mw67r8h"; depends=[dials dplyr foreach glue parsnip purrr rlang tibble]; }; - bookdown = derive2 { name="bookdown"; version="0.29"; sha256="08zpky94bdbjsbhi90pymxpczpfkjxwbx7p1v7ip8raw9b23skjv"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; + bonsai = derive2 { name="bonsai"; version="0.2.1"; sha256="048nfgnzsi0zz0nsxl30nsjg63nszy44881s49g9hgs3vng2vmp2"; depends=[cli dials dplyr glue parsnip purrr rlang tibble]; }; + bookdown = derive2 { name="bookdown"; version="0.30"; sha256="1i54sbrdv2c9l6pcm3229wlwdnhn0x6f2918adszm5k8qdp0h74i"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; bookdownplus = derive2 { name="bookdownplus"; version="1.5.8"; sha256="1cdxz5c69cgdk7wxr0xwhzw361rpg7j8xjv9hjf1877qqmhxbrkd"; depends=[bookdown knitr magick xaringan]; }; boostmtree = derive2 { name="boostmtree"; version="1.5.1"; sha256="17na38k052lzjrssvxssllm9fwpnzhr29g9wwcfkbja6rv2pw9p1"; depends=[nlme randomForestSRC]; }; - boot = derive2 { name="boot"; version="1.3-28"; sha256="0cjafhqv1c1mrjjcasqr767vs96wjcc6am9r1icryr8l4zymhwcz"; depends=[]; }; + boot = derive2 { name="boot"; version="1.3-28.1"; sha256="0lzz08fpn80qzm197s4806hr6skanr3r3rlx6bx7zk4cripygkfl"; depends=[]; }; boot_heterogeneity = derive2 { name="boot.heterogeneity"; version="1.1.5"; sha256="0g4zkvx8krqh54xvjh1a0ybwl3v5bg3l670ycgnps8kkw32w5p1f"; depends=[HSAUR3 knitr metafor pbmcapply rmarkdown]; }; - boot_pval = derive2 { name="boot.pval"; version="0.4"; sha256="05gxpky92f9jhvhv4faj49ql8a9mrfqdgk802i0hdw4lmnn90k7j"; depends=[boot car lme4 Rdpack survival]; }; + boot_pval = derive2 { name="boot.pval"; version="0.4.1"; sha256="0igrxp5ii7wxpx7i8z8dws41yjhiysdhvl19ppcicfx54z62c09d"; depends=[boot car lme4 Rdpack survival]; }; bootCT = derive2 { name="bootCT"; version="1.1.1"; sha256="172a4a2plvhwqvippwbrshbn2n237qnadl4pwx7f5bfs25ichqn0"; depends=[aod ARDL dplyr dynamac gtools pracma Rcpp RcppArmadillo stringr usethis vars]; }; bootComb = derive2 { name="bootComb"; version="1.1.2"; sha256="0gg07ck2nf0ddqc5nflk5ms16m3c6dlf1a77m58q581mkavj6gyb"; depends=[MASS]; }; bootES = derive2 { name="bootES"; version="1.2.1"; sha256="16b14bycy3ds09hsxnk738k2xq9qmwcy3kzdqd6rw9w4j7167kf0"; depends=[boot]; }; @@ -6597,6 +6625,7 @@ in with self; { boussinesq = derive2 { name="boussinesq"; version="1.0.4"; sha256="1gl3hapb31qgdh6jr15czlvdmr58vz2vmlv7p89zpqnyl9lc7vgm"; depends=[]; }; boutliers = derive2 { name="boutliers"; version="1.1-1"; sha256="01dp1w5lxmn6nixajg6dz0qincm0i1in03q7g284v37qnszyimqs"; depends=[metafor]; }; box = derive2 { name="box"; version="1.1.2"; sha256="10hgq9v0bjzkcnya0k7fjlidri02c1p6ph70q3gvi29qp3b22plq"; depends=[]; }; + boxfilter = derive2 { name="boxfilter"; version="0.1"; sha256="1q3vs2js1l5416rc1krsglfv4hz00xdgb2cmmxdmhr6bzxq8mxdc"; depends=[ggplot2 gridExtra]; }; boxplotdbl = derive2 { name="boxplotdbl"; version="1.4.0"; sha256="0yfkkafrq329l6yxbnpwm8yqidixxh7k124xjy5xa92pbng2clbd"; depends=[]; }; boxr = derive2 { name="boxr"; version="0.3.6"; sha256="1hdm4p7zx2r566zaiyw06qg3c790gsvylrvav7g9fl4i1x6qgkyk"; depends=[assertthat bit64 digest dplyr fs glue httpuv httr jsonlite lifecycle magrittr mime purrr rio rlang stringr tibble]; }; bp = derive2 { name="bp"; version="2.1.0"; sha256="0qdpm5nfx2jhc0s77x839jdmk07c88xf739dwf2n8hqhk24y0cdr"; depends=[cowplot dplyr ggplot2 gridExtra gtable lubridate magrittr tibble tidyr tidyselect]; }; @@ -6625,9 +6654,9 @@ in with self; { brassica = derive2 { name="brassica"; version="1.0.2"; sha256="1av52p39jsv54q02v8xa7xilwmz5vzj6zy68y9m5lgl6s86r509y"; depends=[]; }; bravo = derive2 { name="bravo"; version="2.1.2"; sha256="0gs8vplb3sfp82bldbq1glqhr6j2p4pbzxfbhy61sjs88kvh0bp2"; depends=[Matrix Rcpp]; }; brea = derive2 { name="brea"; version="0.2.0"; sha256="0mb043fdhxrg9gyf4g55ydjx37j20394nvd4d0fmiym98lccyi04"; depends=[]; }; - bread = derive2 { name="bread"; version="0.2.3"; sha256="04kgr0f6m1mfczyp46gafkcfxs6lz2yf6qwzbyh04z4psnn3xpyh"; depends=[data_table dplyr stringr]; }; + bread = derive2 { name="bread"; version="0.3.1"; sha256="0pgcrasqmsa5hq9a50w03fay898zzh2h0lb755pfbna70s6gxxgs"; depends=[data_table]; }; breakDown = derive2 { name="breakDown"; version="0.2.1"; sha256="1jm9zmyfcnr9mjz7b30k34h47msvik9ngfysi6dc48gvrk41yk9q"; depends=[ggplot2]; }; - breakaway = derive2 { name="breakaway"; version="4.8.2"; sha256="1mfbzfsqqyfmhkm32qb5237q9n8qwjbqk5vsszs5lkfwi42fz3by"; depends=[ggplot2 lme4 magrittr MASS phyloseq tibble]; }; + breakaway = derive2 { name="breakaway"; version="4.8.4"; sha256="08mxp41d79iaqbz96bpzw7halasijghv0557ccz5p563y5lk3n3m"; depends=[ggplot2 lme4 magrittr MASS phyloseq tibble]; }; breakfast = derive2 { name="breakfast"; version="2.3"; sha256="03qkablrfgxp5c0kpyj38z831f6dwxwql2xkfpkpfjdiaqs7snrd"; depends=[ggplot2 plyr Rcpp]; }; breakpoint = derive2 { name="breakpoint"; version="1.2"; sha256="004vi1qr7iib8ykg6sp7xzv0bb841h4vsz2x0cyrhkdp41frglx9"; depends=[doParallel foreach ggplot2 MASS msm]; }; breathtestcore = derive2 { name="breathtestcore"; version="0.8.4"; sha256="01hqcbqifvq38a1ab0q2c02zavnlajaa41ia0r63d2m6plmdpbsf"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; }; @@ -6640,6 +6669,7 @@ in with self; { bridger = derive2 { name="bridger"; version="0.1.0"; sha256="1rx16zwa3zz4bs7h0b75vsx78dvkif8d9c7prb5pmwccizll7v53"; depends=[cowplot dplyr ggedit ggplot2 glue gridExtra kableExtra magrittr patchwork pdftools scales stringr tibble tidyr]; }; bridger2 = derive2 { name="bridger2"; version="0.1.0"; sha256="0clp42nnbvd01n65azdi2ghp0mfqwsipzdl2d30q04lcvfkdpxrf"; depends=[BSDA data_table ggplot2 outliers plotly shiny shinydashboard]; }; bridgesampling = derive2 { name="bridgesampling"; version="1.1-2"; sha256="0sry1xwiv4y52k44hq6z8y2kysp5kxgl4dix3m94svg3ladd7v2l"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; }; + brif = derive2 { name="brif"; version="1.2.0"; sha256="1z9jz2diwy5n07dd370wsbjl7dz62cai2biwnlk29cfp4rq5l83k"; depends=[Rcpp]; }; brinton = derive2 { name="brinton"; version="0.2.6"; sha256="1zhiz93n9pclib2aczp7qslydjn9l5j17881gg0cga59f96bkwfw"; depends=[forcats GGally ggplot2 glue gridExtra lubridate pander RColorBrewer rmarkdown sm tibble]; }; brio = derive2 { name="brio"; version="1.1.3"; sha256="1inwzvlf6zj6gi47gd0byzqv02qajb3l475z8pjvx2b1hm0r1a7a"; depends=[]; }; briqr = derive2 { name="briqr"; version="0.1.0"; sha256="073pdk1094ng4kggzdjvihl791r2qlja1j2w3pfmh2027kn520r8"; depends=[dplyr httr jsonlite magrittr tibble]; }; @@ -6650,11 +6680,11 @@ in with self; { brms = derive2 { name="brms"; version="2.18.0"; sha256="04g10yx66izpghrqip5h9i0w0bds4xw2vlhp6crydi6i7kh4p4b3"; depends=[abind backports bayesplot bridgesampling coda future ggplot2 glue loo Matrix matrixStats mgcv nleqslv nlme posterior Rcpp rstan rstantools shinystan]; }; brmsmargins = derive2 { name="brmsmargins"; version="0.2.0"; sha256="1qdfig1cy5cf3csky995m0jybb2hyp7yq7ka67wircrln919c1nm"; depends=[bayestestR brms data_table extraoperators posterior Rcpp RcppArmadillo]; }; brnn = derive2 { name="brnn"; version="0.9.2"; sha256="17vsvncilisjp3sjblwg0knn8l4984p4ndql6rbq3wg8n677sy9x"; depends=[Formula truncnorm]; }; - brokenstick = derive2 { name="brokenstick"; version="2.3.0"; sha256="18bxfj79s4gynp1g13gav7lf3xi8cf3ff7dkfs997lg1ajqfkmq2"; depends=[coda dplyr lme4 matrixsampling rlang tidyr]; }; + brokenstick = derive2 { name="brokenstick"; version="2.4.0"; sha256="012r5y2w8y721a3n027j6mc6iz78q1rylr89bshnq0r6g522vw2c"; depends=[coda dplyr lme4 matrixsampling rlang tidyr]; }; brolgar = derive2 { name="brolgar"; version="0.1.2"; sha256="0xhv76z75zsrvcy606cv8qvz14w5g02gcs2744kv1kflaaics7dx"; depends=[dplyr fabletools ggplot2 glue magrittr purrr rlang tibble tidyr tsibble vctrs]; }; broman = derive2 { name="broman"; version="0.80"; sha256="02k8bxv8kpkasxn2m1z5ccvr9gg9lc8k3hskyaf7gvr4khhf575s"; depends=[ggplot2]; }; broom = derive2 { name="broom"; version="1.0.1"; sha256="14i8729m38nxf5q344isgq4006p3b50wi3q8jgckxqphhnj5lpjb"; depends=[backports dplyr ellipsis generics ggplot2 glue purrr rlang stringr tibble tidyr]; }; - broom_helpers = derive2 { name="broom.helpers"; version="1.9.0"; sha256="09ygd6fpm5hb5gjaqy7ihc4k6gj1mbb54f95saj49wmdkcsm292m"; depends=[broom cli dplyr labelled lifecycle purrr rlang stringr tibble tidyr]; }; + broom_helpers = derive2 { name="broom.helpers"; version="1.10.0"; sha256="1kimf5i3i9c5s383rvn1cdwzs1rcknxahhmcn63hkydds0wx2car"; depends=[broom cli dplyr labelled lifecycle purrr rlang stringr tibble tidyr]; }; broom_mixed = derive2 { name="broom.mixed"; version="0.2.9.4"; sha256="1ck0dk5fnacvwsvhp43m983gkmskw1a7f1bjkq5hacka64lwscbn"; depends=[broom coda dplyr forcats furrr nlme purrr stringr tibble tidyr]; }; brotli = derive2 { name="brotli"; version="1.3.0"; sha256="0zivyhyf6g7lb8r919a1cc2xvi36g6cszpl9rr200nfvvw6r6zf1"; depends=[]; }; brpop = derive2 { name="brpop"; version="0.1.5"; sha256="12ngmyqbrqv1hwyh9y8wf9dyr816fxan8vqw0r2jgymsir9c5k6s"; depends=[dplyr future magrittr multidplyr rlang]; }; @@ -6671,19 +6701,21 @@ in with self; { bsamGP = derive2 { name="bsamGP"; version="1.2.4"; sha256="1zga3h747fh61n9m88gazc2p2i905cwvwdkql3rh65h26cphvvs6"; depends=[ggplot2 gridExtra MASS]; }; bsearchtools = derive2 { name="bsearchtools"; version="0.0.61"; sha256="11fqz8kdhqpc3jq34vgv3frzawgsl5y0s83rb2p54yb5yhd3p68w"; depends=[Rcpp]; }; bshazard = derive2 { name="bshazard"; version="1.1"; sha256="1kidypyqlilf794mksjvhja8bmnd9hdhz91ywy0mcddgc6wbar4h"; depends=[Epi survival]; }; - bslib = derive2 { name="bslib"; version="0.4.0"; sha256="1hkmaj0mpygbf6qr1955biv9z4q3khflyqi5x0c3dwi6qz74xspv"; depends=[cachem htmltools jquerylib jsonlite memoise rlang sass]; }; + bsicons = derive2 { name="bsicons"; version="0.1"; sha256="1506p4sskwgszam1vk5slw9nznki6gdf1s95s8cpfa3dih3lbjby"; depends=[htmltools]; }; + bslib = derive2 { name="bslib"; version="0.4.1"; sha256="0bz6w34shk2pijq5hvjv2bg8xhhg4yazn4wcix7436yi9k41zgaf"; depends=[cachem htmltools jquerylib jsonlite memoise rlang sass]; }; bsnsing = derive2 { name="bsnsing"; version="1.0.1"; sha256="1a1vxh1fc5vz7wk73m093bvpz9qb52cfrxcj5yiqm56v309jckzk"; depends=[Rcpp]; }; bspec = derive2 { name="bspec"; version="1.6"; sha256="19l1sagx6kn6i8mcs3i0h6rh7rwsyhphncv55jywpv4g6616kqcv"; depends=[]; }; bspline = derive2 { name="bspline"; version="2.1"; sha256="17k9phl5xlk5gqr220gp2cz749apqfi94kka7q6rzywkn1fb85ff"; depends=[arrApply nlsic Rcpp RcppArmadillo]; }; bsplinePsd = derive2 { name="bsplinePsd"; version="0.6.0"; sha256="0f785l02hiq3f7anxqhm09f7lrqgkkqhly7f1x78cxm22hvrqyhg"; depends=[Rcpp]; }; - bsplus = derive2 { name="bsplus"; version="0.1.3"; sha256="1grn2i2xxq5fhkqb7lqsfhbfckr6i3ddy7mikgxz6lifk4rc4mxx"; depends=[glue htmltools jsonlite lubridate magrittr purrr rmarkdown stringr]; }; - bspm = derive2 { name="bspm"; version="0.3.10"; sha256="1yv9wmsa9xipgv3l1rgdkfbr5ysx5b317xsw0smwsyn7rd6fj02d"; depends=[]; }; + bsplus = derive2 { name="bsplus"; version="0.1.4"; sha256="0bf8qvj7pk3xn7g4p89as1xzx56c75n842g27rj6lcgsf9rdmv9g"; depends=[glue htmltools jsonlite lubridate magrittr purrr rmarkdown stringr]; }; + bspm = derive2 { name="bspm"; version="0.4.0"; sha256="05v0sxa9cs8k0c47hwkfmadfy9ibl0nhs9gjpf6p2hh56q75fbsq"; depends=[]; }; bspmma = derive2 { name="bspmma"; version="0.1-2"; sha256="1a3p1h7bks5yrxv791wfa680v4a6q10p59iz6wvfifhf3ndlaw49"; depends=[]; }; bsreg = derive2 { name="bsreg"; version="0.0.2"; sha256="13701llj5k7vssmgb4fvxswcf9bsc4pxjvh67znbsvrv5cmjh5x3"; depends=[Matrix R6]; }; bssm = derive2 { name="bssm"; version="2.0.1"; sha256="19ii7hs4plgq31yiyr0258y22xckd5dv7k5dp2cwkzrr3h544ylz"; depends=[checkmate coda diagis dplyr magrittr posterior ramcmc Rcpp RcppArmadillo rlang sitmo tidyr]; }; bssn = derive2 { name="bssn"; version="1.0"; sha256="1brxbvcvqy8n9xpvp5kz47x5ps8hdqgnh6s49051qaylp95qm432"; depends=[ClusterR mvtnorm sn ssmn]; }; bst = derive2 { name="bst"; version="0.3-23"; sha256="1wx039cl8s1j1dwjg50ivn39fckkf8mzgrm953bg02w0p0fpz5bh"; depends=[doParallel foreach gbm rpart]; }; - bsts = derive2 { name="bsts"; version="0.9.8"; sha256="14008fcrnpvnwgx7dp0v14ax4iw8p3772jf7fbz26vfv5g6z73lc"; depends=[Boom BoomSpikeSlab xts zoo]; }; + bstrl = derive2 { name="bstrl"; version="1.0.2"; sha256="10ncaicda2rwwrl2ykbrdhh51fziy3ahwp8z859cr2k4v19lviv0"; depends=[BRL doParallel extraDistr foreach]; }; + bsts = derive2 { name="bsts"; version="0.9.9"; sha256="0zaic91yw214bq3285kw7wj8h1jf4g1z9lahgpmikvlqhgy5744g"; depends=[Boom BoomSpikeSlab xts zoo]; }; bsub = derive2 { name="bsub"; version="1.1.0"; sha256="112hlvg15jlzg3drfzkslaly42vnvsycn9vif0w3iaw5fzsaa954"; depends=[clisymbols crayon digest GetoptLong GlobalOptions]; }; bsvars = derive2 { name="bsvars"; version="1.0.0"; sha256="0d5c8fjnigm4zsfzhki1vsdgc310dba716sdiag8vqq7m1r3g2yc"; depends=[GIGrvg R6 Rcpp RcppArmadillo RcppProgress RcppTN]; }; btb = derive2 { name="btb"; version="0.2.0"; sha256="1gm03md6ky134nzmnnp054mi2w8kl4bgcgg4k65zf2cyniz4arxq"; depends=[BH dplyr magrittr mapsf Rcpp RcppArmadillo RcppParallel sf]; }; @@ -6712,6 +6744,7 @@ in with self; { bursts = derive2 { name="bursts"; version="1.0-2"; sha256="0cbksnxavkssp3mz80rz0sdvbg21m5yzjn009wclinz12mm1p9rq"; depends=[]; }; busdater = derive2 { name="busdater"; version="0.2.0"; sha256="0hib73zay9r7rv49zv1lx0l15jzjyli9f1vrk414l8apggvx4c6s"; depends=[lubridate]; }; butcher = derive2 { name="butcher"; version="0.3.0"; sha256="1pq86hn6fcrcwccx82msmmn2s0qxp1k6mybip3yygfpl0cvl0zd3"; depends=[cli lobstr purrr rlang tibble vctrs]; }; + butterflyOptions = derive2 { name="butterflyOptions"; version="1.0.1"; sha256="0kmzrk8gqyqrpp4wfsl04cff13m6aiag7d6fbq7kbb6ln8fa6as9"; depends=[dplyr ggplot2 magrittr tibble]; }; bvarsv = derive2 { name="bvarsv"; version="1.1"; sha256="1bv4fbbi8bn7sqqpjlf8w5jpgydjr15wv5v9940wc42yk792yjrx"; depends=[Rcpp RcppArmadillo]; }; bvartools = derive2 { name="bvartools"; version="0.2.1"; sha256="18spmp2w6gzh3pyfa3x609jp7f3asmkba74kpmb5sqgjvrhxybxa"; depends=[coda Rcpp RcppArmadillo]; }; bvls = derive2 { name="bvls"; version="1.4"; sha256="18aaf7kk5mks3a59wwqhm1ckpn6s704l9m5nzy0x5iw0s98ijbm2"; depends=[]; }; @@ -6735,8 +6768,7 @@ in with self; { cOde = derive2 { name="cOde"; version="1.1.1"; sha256="1h3bp97lqd1jvgnablhxdncmvbf5qwphqbs7xy3r31vpamslz77i"; depends=[]; }; cPCG = derive2 { name="cPCG"; version="1.0"; sha256="1pfbsv2rcjsryn6nr56a7i4yb7k0m3gdfn4q9l1kpzhmv9lic7m1"; depends=[Rcpp RcppArmadillo]; }; cPseudoMaRg = derive2 { name="cPseudoMaRg"; version="1.0.1"; sha256="1mf78pilhx4mqv8n0xrdzn9wkvhnb3bs7rill7n588f18bnjp9mh"; depends=[]; }; - cRegulome = derive2 { name="cRegulome"; version="0.3.2"; sha256="0cvxad73l85zsgqmis5p24v71kkzi784b8v5z07f0dh9yp41p96q"; depends=[DBI ggplot2 ggridges httr igraph R_utils RSQLite UpSetR VennDiagram]; }; - cSEM = derive2 { name="cSEM"; version="0.4.0"; sha256="1h9n33akvh7cyl1r3pa64nxzr9z1723fqcfxa4p3kh6jp5ysqlvp"; depends=[abind alabama cli crayon expm future future_apply lavaan lifecycle magrittr MASS Matrix matrixcalc matrixStats polycor progressr psych purrr Rdpack rlang symmoments]; }; + cSEM = derive2 { name="cSEM"; version="0.5.0"; sha256="0a0pv01ynlac53rdwjhw20alx72ip23izvcxv8bdkdxa41ai3bi5"; depends=[alabama cli crayon expm future future_apply lavaan lifecycle magrittr MASS Matrix matrixcalc matrixStats polycor progressr psych purrr Rdpack rlang symmoments TruncatedNormal]; }; ca = derive2 { name="ca"; version="0.71.1"; sha256="095lk7p2b9835hc3a03c4019wg0baf0dhz6c2vqpaq1m9k4jy304"; depends=[]; }; caMST = derive2 { name="caMST"; version="0.1.6"; sha256="0zg4j81ikm8izgvn4p80z2bxrrg4qlccq4cs3pn2iwy25d6aiknn"; depends=[catR diagram mstR]; }; caROC = derive2 { name="caROC"; version="0.1.5"; sha256="0cklvzfg95yyr37hdfmrna2z6lnhf9f6rrqcjsba1wjmqs8abgsh"; depends=[quantreg RColorBrewer]; }; @@ -6764,8 +6796,8 @@ in with self; { calibrateBinary = derive2 { name="calibrateBinary"; version="0.1"; sha256="1k6sl4bg05piyczpk6wsva914gcmy8viyz4423gx9i6ddflb7xdb"; depends=[gelnet GPfit kernlab randtoolbox]; }; calibrationband = derive2 { name="calibrationband"; version="0.2.1"; sha256="1m3dp7h9dy1ipji3vinknqyhbw1gbv48473rbhpykps8hzrqg206"; depends=[dplyr ggplot2 magrittr Rcpp rlang sp tibble tidyr tidyselect]; }; calibrator = derive2 { name="calibrator"; version="1.2-8"; sha256="1m9g1pmnr6d9jkg5ab0l0cbqfj7kmx7sdmcdqdhn9ifyhhn7812y"; depends=[cubature emulator mvtnorm]; }; - calidad = derive2 { name="calidad"; version="0.3.0"; sha256="1wqb3bc5y0dlny2h476li8zqm83y8388zqhmaiy8hvh350wnq3s5"; depends=[dplyr haven kableExtra purrr rlang stringr survey tidyr]; }; - callr = derive2 { name="callr"; version="3.7.2"; sha256="01q3b0w1cbrryvv1dwvnyd3j1f09xmhnwg1wskc51r3r4qhqmnhj"; depends=[processx R6]; }; + calidad = derive2 { name="calidad"; version="0.4.0"; sha256="1b64wqfr4zb1r5bjbw5jbhs2yi1w91nv66s57h0fnija839zr9kw"; depends=[dplyr haven kableExtra purrr rlang stringr survey tidyr]; }; + callr = derive2 { name="callr"; version="3.7.3"; sha256="0knh5yxhxwjz96kbjrq524w4j8cac10k6mghhmblq79s0zgzwysn"; depends=[processx R6]; }; calmate = derive2 { name="calmate"; version="0.13.0"; sha256="17gfk3am8frj9pqx31pmjswm5nvca9nqbanl0qj4ypsr8wymix7w"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; calpassapi = derive2 { name="calpassapi"; version="0.0.3"; sha256="1vhx5h7ah75cs1mlw25x7hal90m47596kr7fx2pd8fslq7il7p1b"; depends=[digest dplyr httr jsonlite stringr]; }; camcorder = derive2 { name="camcorder"; version="0.1.0"; sha256="10w93897708rcbab4l8942h3grlsw822mqkj7hcp1p8fakgnrxkd"; depends=[ggplot2 gifski jsonlite magick rlang rsvg svglite]; }; @@ -6780,13 +6812,13 @@ in with self; { canadamaps = derive2 { name="canadamaps"; version="0.1"; sha256="1i3yjhr5p06k6id3gws5dzdhf4jy143brbfhi2z4srq67xlz5agl"; depends=[dplyr magrittr rlang rmapshaper sf]; }; canadianmaps = derive2 { name="canadianmaps"; version="1.0.0"; sha256="1r45d65w8yfgwj8xf6lhsw0fi1b8j8gyayxrcs7wy56kacjjvym8"; depends=[dplyr ggplot2 ggrepel RColorBrewer rgdal sp]; }; canaper = derive2 { name="canaper"; version="1.0.0"; sha256="18b1sr6xpf4iljjb5jcxldlfk4x1d4w9j2pw8196r1k02qpg79ki"; depends=[ape assertr assertthat dplyr future_apply phyloregion progressr purrr tibble vegan]; }; - cancensus = derive2 { name="cancensus"; version="0.5.3"; sha256="0lrw983bml8l130kcampzacrdxa0frm80h7vpr9n6wwnq4vmcbr4"; depends=[digest dplyr httr jsonlite rlang]; }; + cancensus = derive2 { name="cancensus"; version="0.5.4"; sha256="0pzm58fxhd330m5iq2k6527p5jsbfp2fj05mma39ib3gxliniwni"; depends=[digest dplyr httr jsonlite rlang]; }; cancerGI = derive2 { name="cancerGI"; version="1.0.0"; sha256="1chkcyf9m98gbn6b3vmb1baw7kii4g5vxvg2xfi7i6wwdn8sqr65"; depends=[igraph qvalue reshape2 survival systemfit]; }; cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; candisc = derive2 { name="candisc"; version="0.8-6"; sha256="17bhh3jgaq5hrlwaapwpsgk7f8a3sg2cmrjd1hgfxxx0z30a6icn"; depends=[car heplots]; }; canprot = derive2 { name="canprot"; version="1.1.2"; sha256="1lwlgzy0gxp7jrak838awmqz3w0x7qd51bkyhydb1s61073w77x8"; depends=[CHNOSZ MASS rmarkdown xtable]; }; - cansim = derive2 { name="cansim"; version="0.3.12"; sha256="1vc92kv5d517gzwp6mbi3913d8bkikjxbaj4jyf9981zdqzgc3b8"; depends=[DBI digest dplyr httr jsonlite purrr readr rlang RSQLite rvest stringr tibble xml2]; }; - canvasXpress = derive2 { name="canvasXpress"; version="1.40.6"; sha256="1jdx3yfl10s1y4wxa48dydrfb3j8a8b9aismvmqyf8gm11l4y218"; depends=[htmltools htmlwidgets httr jsonlite]; }; + cansim = derive2 { name="cansim"; version="0.3.13"; sha256="0jxgrybrilqbnsrrd9k3hnjcyi1pvrdlb6ni3qgi3sj1x3zbkj3i"; depends=[DBI digest dplyr httr jsonlite purrr readr rlang RSQLite rvest stringr tibble xml2]; }; + canvasXpress = derive2 { name="canvasXpress"; version="1.40.6-2"; sha256="0fxnki66y7i0gqhjnjz673nmngq7scc3dasc2frn8w2ysj7v32j5"; depends=[htmltools htmlwidgets httr jsonlite]; }; canvasXpress_data = derive2 { name="canvasXpress.data"; version="1.34.2"; sha256="10fdlb1yp5x9533jdammncfrrlxzpcz9as8i0209pwzjywvxby3s"; depends=[]; }; cap = derive2 { name="cap"; version="1.0"; sha256="1pv8hskxjbp589dn7rx80yaa1ld76x1w37bss2fyrys1p3qr78aa"; depends=[MASS multigroup]; }; cape = derive2 { name="cape"; version="3.1.1"; sha256="0srgajj77a66pxj4kghjv4hjswv8arfmxbq25mpccc0fzalz1zlp"; depends=[abind caTools corpcor doParallel evd foreach here igraph Matrix pheatmap pracma propagate qtl qtl2 qtl2convert R6 RColorBrewer regress shape yaml]; }; @@ -6802,7 +6834,7 @@ in with self; { carData = derive2 { name="carData"; version="3.0-5"; sha256="06j52rpbqi6fj7chfjwjbwbr6slrbb7i3aygv66gnfiyndcp3rq2"; depends=[]; }; carSurv = derive2 { name="carSurv"; version="1.0.0"; sha256="0wv7lp10i4sdfqyizg77ghblp3pcp7wzhs946sm0wl6w00krav9j"; depends=[corpcor fdrtool mboost Rcpp survival]; }; caracas = derive2 { name="caracas"; version="1.1.2"; sha256="0my74q2l4vncans5s541mphl5pvkd4knxb0i396yf5w6a1vnqwlw"; depends=[magrittr reticulate]; }; - carat = derive2 { name="carat"; version="2.0.2"; sha256="0f6r4x5skjq7vcmwfhnrzrf69ry360y7wqrr5gsys8l5nv6qbjii"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo stringr]; }; + carat = derive2 { name="carat"; version="2.1.0"; sha256="12b6n99m1zcqxqsa2dk36i6g9qwmd8lzr3mlvj5454n4bgvqb4h0"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo stringr]; }; carbonate = derive2 { name="carbonate"; version="0.1.4"; sha256="01k8c49v8ybgcwdr9ipw319lxw4p14w9bzl54j1ljbajdzgzcgwk"; depends=[clipr details httpuv httr jsonlite magick R6 RSelenium rtweet wdman yaml]; }; carcass = derive2 { name="carcass"; version="1.6"; sha256="0nhp35nxjqqmy15rf9vc0qyymy7d0v8mc84570b9nc62g5xac8xy"; depends=[arm expm lme4 MASS survival]; }; card = derive2 { name="card"; version="0.1.0"; sha256="1api0j06fp5av5a48vnnm1wvwdcskynf0xsj9pb41njxdh9v8daf"; depends=[broom data_table dplyr generics ggplot2 ggrepel hardhat Hmisc lubridate lutz magrittr purrr readr recipes rlang sf stringr survival tibble tidyr]; }; @@ -6814,7 +6846,7 @@ in with self; { caretForecast = derive2 { name="caretForecast"; version="0.1.1"; sha256="0z8r64cb3w0m5a7khysvfmnf1ywa7svi5lvxiwx1a6j6868zbxlr"; depends=[caret dplyr forecast generics magrittr]; }; carfima = derive2 { name="carfima"; version="2.0.2"; sha256="1n68jqn42m54xn7jq8qywrpnvggrcsgvgnlqg6nw0pgiplbkynih"; depends=[DEoptim invgamma mvtnorm pracma truncnorm]; }; caribou = derive2 { name="caribou"; version="1.1-1"; sha256="1spz5ymqv8k48yg0rrdrs9ylasdif2jwcq2z33gagd6yrim1a3q3"; depends=[]; }; - caroline = derive2 { name="caroline"; version="0.8.0"; sha256="0xhr4g020xyd2jzzpknw6zdh33ihsclwxrkkl4mclybj3xqn9x2q"; depends=[]; }; + caroline = derive2 { name="caroline"; version="0.9.0"; sha256="1j1s4jli3pjl815fhmhz063y8aimz1qr14gacf9rvs7hyandlcbj"; depends=[]; }; carpenter = derive2 { name="carpenter"; version="0.2.2"; sha256="13ahhdc6f5ngrhb7slqbxzfs3wswixh0argyr6l46cv4fdkaa80s"; depends=[dplyr lazyeval magrittr pander tibble tidyr]; }; carrier = derive2 { name="carrier"; version="0.1.0"; sha256="0bqnwnnjqjk9q0lxq6kkz9s75ss10lfyyywyyi24m8wppxpw1vqc"; depends=[pryr rlang]; }; cartograflow = derive2 { name="cartograflow"; version="1.0.3"; sha256="09n3pgm70frrx9li1djrwkf4lzcq9c1xjs037vmsb1as0xvd19a1"; depends=[dplyr ggplot2 igraph maptools plotly reshape2 rgeos rlang sf sp]; }; @@ -6822,18 +6854,19 @@ in with self; { cartogramR = derive2 { name="cartogramR"; version="1.0-9"; sha256="0j8xa11g3m9sp2vcx0z6lk6cpdd8f83r2qx1ibcz28h5s6nmvn69"; depends=[data_table sf]; }; cartography = derive2 { name="cartography"; version="3.0.1"; sha256="1ginq160ag0sv5xfiqc5a5vizsqvl3maw61yskwhfnjb2lcgk2yg"; depends=[classInt curl png raster Rcpp rgeos sf slippymath sp]; }; casabourse = derive2 { name="casabourse"; version="2.0.0"; sha256="1s7zp44cmfnq4l9rzydqpnv9s2z4v7bvng8diz3bhzkg2zhpglnq"; depends=[gsheet R_utils RJSONIO rvest]; }; + caschrono = derive2 { name="caschrono"; version="2.3"; sha256="06q327cqa0hb0q60zyyj6r7ydcw9big597nwmmhb8px9j9d4pxdr"; depends=[Hmisc zoo]; }; cascsim = derive2 { name="cascsim"; version="0.4"; sha256="0n6frnbby1pjpx1z9lzxflmja2mg0dy99c5f7biakpaqi82x5xjb"; depends=[copula fitdistrplus moments R2HTML scatterplot3d]; }; caseMatch = derive2 { name="caseMatch"; version="1.0.8"; sha256="0bp2g0zzcspa6riinsa3bp1qwiip6z058hn2y5mw0w9xah8a685a"; depends=[]; }; - casebase = derive2 { name="casebase"; version="0.10.1"; sha256="0yrzl961apslhk77gdnl9mmh1sdxw1az8lpl393n30qs1kl6g4zv"; depends=[data_table ggplot2 mgcv survival VGAM]; }; + casebase = derive2 { name="casebase"; version="0.10.3"; sha256="0my4vsirm4n8qd3b81ml1hkllimz41l0819njc92znfyg7y6pj63"; depends=[data_table ggplot2 mgcv survival VGAM]; }; casino = derive2 { name="casino"; version="0.1.0"; sha256="07fphn46718gr1zm0xr43mwv7yk697xrc40lxxin315cf3gm0cka"; depends=[crayon dplyr ggplot2 magrittr purrr R6 tibble tidyr]; }; cassandRa = derive2 { name="cassandRa"; version="0.1.0"; sha256="0rwqzxbflxn1iyggm3mq6pkbl61mhk4vdwqwzlwrhrvvr2ib236r"; depends=[bipartite boot dplyr ggplot2 magrittr purrr reshape2 tidyr vegan]; }; cassowaryr = derive2 { name="cassowaryr"; version="2.0.0"; sha256="1gk54haciy3vj7xj6cji1v90xh7g8790zq1rykyispx09jr2dpx3"; depends=[alphahull dplyr energy ggplot2 igraph interp magrittr progress splancs tibble tidyselect]; }; - castor = derive2 { name="castor"; version="1.7.4"; sha256="0d0i974sa289pv0yw7wi3cdd8gpn3nyxfvm3vjgvr0hdr7bah6cp"; depends=[Matrix naturalsort Rcpp RSpectra]; }; + castor = derive2 { name="castor"; version="1.7.5"; sha256="0dfs0rjrw9zrs9n0avy3fq5r7vi4alvd55l7582j47dbwj82i1a5"; depends=[Matrix naturalsort Rcpp RSpectra]; }; cat = derive2 { name="cat"; version="0.0-7"; sha256="1a5csycaddg7cmfn51sw520b9bbpp07a08hsi2f6lpzqiszhczj1"; depends=[]; }; cat2cat = derive2 { name="cat2cat"; version="0.4.5"; sha256="07c6km66rps24z8mwa588gigl67j50icmvbqb7x9acz1938sqlwg"; depends=[MASS]; }; catIrt = derive2 { name="catIrt"; version="0.5.1"; sha256="1wagk9f9mvf3b5yvwpas9yqjzpcp786d37wn71jj1af0khry8k62"; depends=[numDeriv]; }; catR = derive2 { name="catR"; version="3.17"; sha256="178pq6cy3kjpd7mpaky2y8f18561gsf727y0y6rmgm2bn71p2i76"; depends=[]; }; - catSurv = derive2 { name="catSurv"; version="1.4.0"; sha256="02hrq51yk7zxz6vr4ykjwjnim9g09d63vpy3g0sm9hidbxryq139"; depends=[BH jsonlite ltm plyr Rcpp RcppArmadillo RcppGSL RcppParallel]; }; + catSurv = derive2 { name="catSurv"; version="1.5.0"; sha256="0jw7jlam7d44g9sbwmxckm4mywhky2a6h1w5w849g47p7mvi32dc"; depends=[BH jsonlite ltm plyr Rcpp RcppArmadillo RcppGSL RcppParallel]; }; cata = derive2 { name="cata"; version="0.0.10.9"; sha256="1226la2gm0r5wayharpmgm6lm7nr681xnzc0rpk8p39wwdyixmmr"; depends=[]; }; catalog = derive2 { name="catalog"; version="0.1.1"; sha256="1j43c34qdklv8pskaidq5fxrygv9lngamdcrkij9c844qj7iff14"; depends=[dplyr sparklyr]; }; catch = derive2 { name="catch"; version="1.0.1"; sha256="1a63d1a6pzzirdzswngjj036jmg41hbiadwriws7k05qp95jdh6a"; depends=[MASS Matrix tensr]; }; @@ -6842,17 +6875,16 @@ in with self; { catdata = derive2 { name="catdata"; version="1.2.2"; sha256="14kx7yi0cv6dyh9wjasb8gn6cp1bhglgwql7dc2a7lqvdcp0d5vj"; depends=[MASS]; }; cate = derive2 { name="cate"; version="1.1.1"; sha256="0wqfblyr7rjx9wnpbnv5lw2zv7nw3mbdjn866l1ng779vka1wdc5"; depends=[corpcor esaBcv leapp MASS Matrix ruv sva]; }; categoryEncodings = derive2 { name="categoryEncodings"; version="1.4.3"; sha256="0ns8ml2hm41650bi8yag6w3k9nb2ky43370444cgy3i7ajpzw87w"; depends=[data_table glmnet sparsepca]; }; - catenary = derive2 { name="catenary"; version="1.1.2"; sha256="1n64kq3lkaf00a2mghs67hnxvi4dp6g12pwifyx0bd418wkw9wf3"; depends=[boot broom dplyr ggplot2 tidyverse]; }; catfun = derive2 { name="catfun"; version="0.1.4"; sha256="1482rll333fvy4h58f15flfs7qrck3vk9bzpdn3hayhnmc7svmma"; depends=[broom cli DescTools epitools Hmisc magrittr rlang]; }; cati = derive2 { name="cati"; version="0.99.4"; sha256="02g33kkp97kswiyjsd378zpa3fc9rjk2d9f4l1gdh7pzglabsmgl"; depends=[ade4 ape e1071 FD geometry hypervolume nlme rasterVis vegan]; }; catlearn = derive2 { name="catlearn"; version="0.9.1"; sha256="0l7ns9dmgl5k9nmywknna9hi8bmvlijds89pppywd7karksr5i66"; depends=[doParallel dplyr foreach Rcpp RcppArmadillo tidyr]; }; catmap = derive2 { name="catmap"; version="1.6.4"; sha256="18449qh10jxfi8p49gmbnib5y013nfdgdblbs4n0mfs0nnzb10sx"; depends=[forestplot metafor]; }; catmaply = derive2 { name="catmaply"; version="0.9.2"; sha256="1rwp2ca6m4k104yc5pim66r5fpcakvzmkpg732jz3j34pw3w6nss"; depends=[dplyr magrittr plotly rlang]; }; - catnet = derive2 { name="catnet"; version="1.15.7"; sha256="015qh9k0jj5plp777j3kl20601qiwadkaqrdb0483h3gwqwy828g"; depends=[]; }; cats = derive2 { name="cats"; version="1.0.2"; sha256="0snc5vrf8qm53yd42gskhnpp6lfgfkldgpjj3jbcry0wpbfc0dv0"; depends=[doParallel dplyr epitools forcats foreach ggplot2 mvtnorm openxlsx plotly purrr tidyr zoo]; }; catseyes = derive2 { name="catseyes"; version="0.2.5"; sha256="11n2kxkqv4hqymkj6lkpcvhq6325q8f5w384xf8zb71jl8vx616l"; depends=[]; }; catsim = derive2 { name="catsim"; version="0.2.3"; sha256="1gz38xrzbray5ciiimkzdass8bhmiqxh6bcngjm5i8dvafk5gf9g"; depends=[Rcpp testthat]; }; cattonum = derive2 { name="cattonum"; version="0.0.5"; sha256="11h9nh2i2bmd0b562l5avhwpj9ppnfmzd9nsv94cymhwn5h6nmg6"; depends=[dplyr purrr Rcpp rlang tibble tidyselect]; }; + cauchypca = derive2 { name="cauchypca"; version="1.0"; sha256="1325cr6799ky3hxvhkb30xjq9pvk1wsm3rj0y11slwhs33hvl621"; depends=[doParallel foreach Rfast]; }; causact = derive2 { name="causact"; version="0.4.2"; sha256="059s70q7pdhbym2aj8ww35j6iv9n3am4nh7ywqg41ahyhc7mm9k0"; depends=[coda cowplot DiagrammeR dplyr forcats ggplot2 greta htmlwidgets igraph lifecycle magrittr purrr rlang rstudioapi stringr tidyr]; }; causal_decomp = derive2 { name="causal.decomp"; version="0.0.1"; sha256="08ccdzb5ssqhzkr3z3b8vz762mwflh33s6rrmsb9srvkk661lly2"; depends=[CBPS MASS nnet PSweight spelling SuppDists]; }; causalDisco = derive2 { name="causalDisco"; version="0.9.1"; sha256="1lni0y76prhvw60m0awwgmfadwlv1ciywlr85sr8ig2vaxf1smh9"; depends=[clipr gtools igraph pcalg RColorBrewer scales]; }; @@ -6864,11 +6896,12 @@ in with self; { causaloptim = derive2 { name="causaloptim"; version="0.9.2"; sha256="02d5rrs1h80c49664bicqh7il6x1r4wfid9791si7a35jz8gq0h2"; depends=[igraph rcdd Rcpp shiny]; }; causalsens = derive2 { name="causalsens"; version="0.1.2"; sha256="1xy8nybflbw6hymc15mmz27ic6hcq89wryb8q6d4zi216lwv2nww"; depends=[]; }; causalweight = derive2 { name="causalweight"; version="1.0.3"; sha256="1v1vmm5kfay3padkkr87yp5g539lqk5h3rl6w982glpqs8q80c59"; depends=[e1071 fastDummies glmnet hdm LARF mvtnorm np ranger SuperLearner xgboost]; }; - cba = derive2 { name="cba"; version="0.2-21"; sha256="0j2hbp0xlfp28gqgnkcvmb4yp1kc5m2bp5x7pr4m1pz2b1s7h7m6"; depends=[proxy]; }; + caviarpd = derive2 { name="caviarpd"; version="0.3.4"; sha256="1rc2h6a4i0n4wf0masyrq21vazm96kzhb7gz73h08a2ig1s66vhp"; depends=[]; }; + cba = derive2 { name="cba"; version="0.2-23"; sha256="18al5kavn3q2h6gl4s1hgxhy9ysv9fq602ffmzla251g380b166n"; depends=[proxy]; }; cbanalysis = derive2 { name="cbanalysis"; version="0.2.0"; sha256="0h0h8krlb6rckjpcw0jbbr8pcy3jm0cszimbm56l0ca668kiix06"; depends=[]; }; cbinom = derive2 { name="cbinom"; version="1.6"; sha256="1vi2kjlss4fmra1h8r6xgk4y66gzpdp61hcyzby2rqji93sib195"; depends=[Rcpp]; }; cbioportalR = derive2 { name="cbioportalR"; version="1.0.1"; sha256="01gfzghfww4dfc6sliy4vfxjghncchlyn1f37prbjbvfx921v7xp"; depends=[cli dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr]; }; - cbl = derive2 { name="cbl"; version="0.1.1"; sha256="0hk2c92vmka17hbc1dy0mz86v888drh6qbgd1dvjzszqimx1si4i"; depends=[data_table foreach glmnet lightgbm]; }; + cbl = derive2 { name="cbl"; version="0.1.2"; sha256="1yrhpzwj1mzyrb38fxljq3w93s2ab2ann2ryywai3g7gdmfsn20q"; depends=[data_table doRNG foreach glmnet lightgbm]; }; cbq = derive2 { name="cbq"; version="0.2.0.2"; sha256="0vg1mhk147pib61v4im3ikc551c2nmmcfah9fjw9c978gf81g32n"; depends=[BH Formula Rcpp RcppEigen rstan rstantools StanHeaders]; }; cbsodataR = derive2 { name="cbsodataR"; version="0.5.1"; sha256="02dalankaa4lfv9r7bc9cphmwb0mq6an7bs44rihipj8dsjd0v9y"; depends=[jsonlite whisker]; }; ccRemover = derive2 { name="ccRemover"; version="1.0.4"; sha256="1npd0vx2hyg7qbwd650987i49v5cxr6i1hlj5rw6fxc0b808s596"; depends=[]; }; @@ -6910,12 +6943,11 @@ in with self; { cdrcR = derive2 { name="cdrcR"; version="0.0.1"; sha256="1z6z27rnqg07i5j09q0xwy9bvwci1vc2vijp6r733diivyhcraiv"; depends=[dplyr httr jsonlite magrittr purrr rjson rlang rlist sf tidyr tidyselect urltools]; }; cds = derive2 { name="cds"; version="1.0.3"; sha256="1h34k96h7ajkaqsw4dlqri63hrbnshaqwrdl74wlgycdlbvrqj05"; depends=[clue colorspace copula limSolve MASS]; }; ceRtainty = derive2 { name="ceRtainty"; version="1.0.0"; sha256="01wgvjpxqwhgh6vx9vbmiv4d88bps790l6ij3gw5w69hbrrd9ixi"; depends=[dplyr RColorBrewer tidyr]; }; - ced = derive2 { name="ced"; version="1.0.1"; sha256="0xrf3y1cr4dylhh2xr1gggnwdwn7riz37g6yw55hyryg03hxkms6"; depends=[Rcpp]; }; ceg = derive2 { name="ceg"; version="0.1.0"; sha256="01la7kv0a3inc9vy5x010ysicfiv404bqfgs8csvqixviap9rd74"; depends=[graph Rgraphviz]; }; celestial = derive2 { name="celestial"; version="1.4.6"; sha256="1gls0qvr8mxz79lsmk76v253f747g0cqys8p8wjmpijs8r0pyr4z"; depends=[NISTunits pracma RANN]; }; cellOrigins = derive2 { name="cellOrigins"; version="0.1.3"; sha256="0nxhyz9bz0f598wpr10hm1d0zx83450xf9jkrl279v46x8sx36n4"; depends=[iterpc]; }; cellVolumeDist = derive2 { name="cellVolumeDist"; version="1.4"; sha256="1pbssq8zf1cmihs3fg5zgb3k876magxl84jld6vcfvvp76sxhr7l"; depends=[gplots minpack_lm]; }; - cellWise = derive2 { name="cellWise"; version="2.4.0"; sha256="1pqs7zw06ycr7413xxrnyrvq7m8ykhvni42n9s236822a0pbrpyb"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 robustbase rrcov scales svd]; }; + cellWise = derive2 { name="cellWise"; version="2.5.0"; sha256="1ls455d4y3mfkhz0g45qkhhd4jl7awipakcrsi87lskixzza73rr"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 robustbase rrcov scales shape svd]; }; cellpypes = derive2 { name="cellpypes"; version="0.1.3"; sha256="0wyf0p5x7dz8qy7xayp8n52cvk73fai13vzsknfk1qvs8wygnlfp"; depends=[cowplot dplyr ggplot2 Matrix rlang scales scattermore scUtils viridis]; }; cellranger = derive2 { name="cellranger"; version="1.1.0"; sha256="16fgi3annn34c3cxi0pxf62mmmmxi21hp0zzlv7bkfsjqy4g4f2x"; depends=[rematch tibble]; }; celltrackR = derive2 { name="celltrackR"; version="1.1.0"; sha256="08hbgpwcpf7v8l7qmszhjh0w4f4zjcizrdsxksihxpwdi9r4al3w"; depends=[ellipse pracma]; }; @@ -6923,14 +6955,14 @@ in with self; { cenGAM = derive2 { name="cenGAM"; version="0.5.3"; sha256="0qic2g2bq24k9jimxdk8g7bsmi4br2r6159ipdhh5ym81ji3sf5p"; depends=[mgcv]; }; censCov = derive2 { name="censCov"; version="1.0-0"; sha256="0i9vmyi12f1m5xnrl4cxk3z9qv7ymzxsyf4gbnpg1ph63yfnhv3g"; depends=[survival]; }; censReg = derive2 { name="censReg"; version="0.5-36"; sha256="0r8pyscsw3m8lf6mx70sjk70k7i1jfjkk2qzq19m85q3byx447n6"; depends=[glmmML maxLik miscTools plm sandwich]; }; - censable = derive2 { name="censable"; version="0.0.3"; sha256="15274slkqkmwvipjb7p58knwpmq6iahpik2dg80j96fjdrpppl0g"; depends=[dplyr magrittr memoise rlang sf stringr tibble tidycensus]; }; + censable = derive2 { name="censable"; version="0.0.5"; sha256="15p4ggnkcddm2lglf798bcjghppx0pqzc8nyljyiw0hwsw14c7yg"; depends=[censusapi dplyr magrittr memoise purrr rlang sf stringr tibble tinytiger]; }; censo2017 = derive2 { name="censo2017"; version="0.6.1"; sha256="02q25kxv6kxj3634xk7vd3mwa8qvnmagwyh020z9yq6l6qfn2s6b"; depends=[cli crayon DBI duckdb httr purrr rstudioapi tibble]; }; censorcopula = derive2 { name="censorcopula"; version="2.0"; sha256="16pk4xlpliif02qznrhvl8qmrr6k4kknygqxcm83nsjxy6dcyga8"; depends=[copula]; }; censored = derive2 { name="censored"; version="0.1.1"; sha256="1878791vrm564mvlw0cw4spls03y7vgyc9r1qcfq98diffm9cqln"; depends=[dials dplyr generics glue hardhat mboost parsnip prettyunits purrr rlang survival tibble tidyr]; }; censusGeography = derive2 { name="censusGeography"; version="0.1.0"; sha256="1ncgd05ml571g3vy1g4p5xxg2bm08hbb6d5r3hpz7frn7w3l8l1d"; depends=[qdapTools]; }; censusapi = derive2 { name="censusapi"; version="0.8.0"; sha256="1wswd6kmb0fbyc3zs3q3dhhaa1la1z5alz4vg485ac9wacnab60r"; depends=[httr jsonlite]; }; censusr = derive2 { name="censusr"; version="0.0.4"; sha256="1n9571fyr46wj1dcxc2xgns9865655yzlq7yfz8im014wh0ycwqc"; depends=[dplyr httr stringr]; }; - censusxy = derive2 { name="censusxy"; version="1.1.0"; sha256="07xjkkfgr9q4g3hs6fr24rvmhhg4abxp6zxzq6qwc0r499qbx33y"; depends=[doParallel foreach httr]; }; + censusxy = derive2 { name="censusxy"; version="1.1.1"; sha256="1gdry73xzcixa3hfchlf2xmmlnhk1vsg7k3axvynvlr493i7qf2a"; depends=[doParallel foreach httr]; }; censys = derive2 { name="censys"; version="0.1.0"; sha256="0r0yvaidn0qn96hx461415hywsjfgaz9wvvdssx7w97v2ndnk9sy"; depends=[httr jsonlite purrr stringi]; }; centiserve = derive2 { name="centiserve"; version="1.0.0"; sha256="1m6gqz2rk7023340laa5pc0ncbfka2qi9ajvh65fwijd7xvv3n5c"; depends=[igraph Matrix]; }; centralplot = derive2 { name="centralplot"; version="0.1.0"; sha256="1slzvbm1vvgj1gkcx9pb46fz8q55vfyqrxsvx4qzi5kp7d9h4dy2"; depends=[ggplot2]; }; @@ -6949,7 +6981,7 @@ in with self; { cfda = derive2 { name="cfda"; version="0.10.1"; sha256="0v81wgqkp48gf11nxpg1dfj93qk55n8d7mfc1cyymkkhxzzdar44"; depends=[diagram fda ggplot2 mgcv msm pbapply]; }; cfdecomp = derive2 { name="cfdecomp"; version="0.4.0"; sha256="0g61gpihk5kbbrqzn15fqjv3bawsq1vq3sdssbzs5j96afmf2aq8"; depends=[]; }; cffdrs = derive2 { name="cffdrs"; version="1.8.20"; sha256="0x2gzqcif79hkrchx50j5yvxwwpgv8g8bxisfsa1xd7sja609hw7"; depends=[data_table doParallel foreach geosphere raster rgdal]; }; - cffr = derive2 { name="cffr"; version="0.3.0"; sha256="1hncf2bd8s7a77aay3iaz3k8l5wba7c89yiz1yap506ihjzbb94j"; depends=[crayon desc jsonlite jsonvalidate yaml]; }; + cffr = derive2 { name="cffr"; version="0.4.0"; sha256="0vyg3cl1vkz40ds2birlxn5ip24gfn5i4405vvnnb6gjp9ymmcpv"; depends=[crayon desc jsonlite jsonvalidate yaml]; }; cfid = derive2 { name="cfid"; version="0.1.4"; sha256="1jd66vy71b5y4ng4k5ln08cm0pa1xrzd9in1l4d1qq4cnw5qa724"; depends=[]; }; cfma = derive2 { name="cfma"; version="1.0"; sha256="006z5g3rqpg44jqdf6ivyxr47sxm5cd9cqhayfi8qk73xx5w4lv9"; depends=[]; }; cfmortality = derive2 { name="cfmortality"; version="0.3.0"; sha256="0dgwv89fzylznc6jr41ixzfs1gfs3np4gf46bk6pcd09l1kbx3lc"; depends=[]; }; @@ -6959,19 +6991,20 @@ in with self; { cgAUC = derive2 { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp]; }; cgaim = derive2 { name="cgaim"; version="1.0.0"; sha256="0bi8rmykgynkkbpkvm3n9ihl8x41n4msgz17ilwpa1xw9lf3pcj6"; depends=[cgam coneproj doParallel foreach gratia limSolve MASS Matrix mgcv osqp quadprog scam scar TruncatedNormal]; }; cgal4h = derive2 { name="cgal4h"; version="0.1.0"; sha256="0ghcwjfqlhqysnl8mgz6zp7dyqh8pvnpvphwjwk6zqi24n3nhac2"; depends=[]; }; - cgam = derive2 { name="cgam"; version="1.19"; sha256="1iw5wky4fr24jggwvink0frxy7qpgnvf08csfk240qk54spjbi81"; depends=[coneproj lme4 Matrix statmod svDialogs]; }; + cgalMeshes = derive2 { name="cgalMeshes"; version="1.0.0"; sha256="0580yf3sy7xxs629zhdl16agawfm7db7zvdi99a0sr0ab9h7nhj3"; depends=[BH data_table R6 Rcpp RcppCGAL RcppEigen rgl]; }; + cgam = derive2 { name="cgam"; version="1.20"; sha256="0mrd574zyajs46wgdyyly3vxpbpnvp5p8m4n1hsqyrjn6ba3lws4"; depends=[coneproj lme4 Matrix statmod svDialogs]; }; cghRA = derive2 { name="cghRA"; version="1.6.0"; sha256="16dlw27s8wckc75xcwc2g74pw6bar0y0ii3h53w1hql05d4f7sb8"; depends=[DNAcopy Rgb]; }; cglasso = derive2 { name="cglasso"; version="2.0.5"; sha256="0lmdsqk4fl9n02akm8ri4vrqjhxm0cxrbl0l2kywnvb1zckn75g3"; depends=[igraph MASS]; }; cglm = derive2 { name="cglm"; version="1.1"; sha256="1r3wrds5lbirzzqsi12prwykxa5361jb95pq7j95nlp6y8kcb94j"; depends=[data_table nleqslv Rcpp RcppArmadillo]; }; cgmanalysis = derive2 { name="cgmanalysis"; version="2.7.6"; sha256="0vs7n77p4midyfm8ng0sjanalvb9b7qgzhn6gazh51wjzczg759n"; depends=[ggplot2 lubridate parsedate pastecs pracma readr readxl XML zoo]; }; cgmquantify = derive2 { name="cgmquantify"; version="0.1.0"; sha256="11pw1layzx9a8qy7n06nyc59mi5r07krhxw6hhybbqkdglzp511w"; depends=[dplyr ggplot2 hms magrittr tidyverse]; }; - cgraph = derive2 { name="cgraph"; version="6.0.1"; sha256="0hmp07iz7ya3j8jaghm4pa0b84lsinc48rsibbh47sd3i6pkxfik"; depends=[]; }; cgrcusum = derive2 { name="cgrcusum"; version="0.1.0"; sha256="1pmni0bw7yp8alqyd88ysl858jkp926my2c5g6z31izzyih29s0z"; depends=[ggplot2 survival]; }; cgwtools = derive2 { name="cgwtools"; version="3.3"; sha256="1dl9ghwfzjrl5pd6izy4c5qyfq2s8ywnqh97y1bhwmcw2qwb4ci6"; depends=[gmp]; }; ch = derive2 { name="ch"; version="0.1.0.2"; sha256="1ryh2xr1ix4qznq1svi4gdr4qy6v6rg597z2zl6zw32s2xq6ssx6"; depends=[clipr crayon ggplot2 magrittr MASS polynom pracma Ryacas]; }; chameleon = derive2 { name="chameleon"; version="0.2-3"; sha256="0a3azp0zaakpqqx0pp94hkj3vgb2apnf8gb5ga0as4i8lrn9dz8i"; depends=[clue ggplot2 umap]; }; chandwich = derive2 { name="chandwich"; version="1.1.5"; sha256="1i3gg3ib4j33i5f3a6x9k2g8d5ccbdmv2pb2bdhiwwsjy8bfmsvq"; depends=[numDeriv]; }; - changepoint = derive2 { name="changepoint"; version="2.2.3"; sha256="1hpdxz9kqgvn5059sj2pmr7bg208ba950aidy256lad5hdjz2mcj"; depends=[zoo]; }; + changeRangeR = derive2 { name="changeRangeR"; version="1.0.1"; sha256="1lqml0lran2ggq0f855517lxbyscbymn7f5zvjwak433yr8y8p95"; depends=[dplyr phylobase rangeModelMetadata raster rgeos sf sp]; }; + changepoint = derive2 { name="changepoint"; version="2.2.4"; sha256="16v4p2c9zi2w3anwf5y9snl5dy1g5aidiqz1vn2p64qhfvg6yqxc"; depends=[zoo]; }; changepoint_geo = derive2 { name="changepoint.geo"; version="1.0.1"; sha256="1jlixdrq97n6bh09jq3hamlwkqfqbmqs14kr8swx20f8fvfr3fj2"; depends=[changepoint changepoint_np ggplot2 Rdpack]; }; changepoint_influence = derive2 { name="changepoint.influence"; version="1.0.1"; sha256="03m7vyqy0qdvkrr0cgxc2g019rjkmsc0fwnzkp2gxbbhvwhs4qzd"; depends=[changepoint data_table ggplot2 gridExtra reshape]; }; changepoint_np = derive2 { name="changepoint.np"; version="1.0.5"; sha256="1kyj1z0mmbk1i71d5xxw8h3468afvwlqma659yjck3y5dszb1vn9"; depends=[changepoint Rdpack zoo]; }; @@ -6991,7 +7024,6 @@ in with self; { checkpoint = derive2 { name="checkpoint"; version="1.0.2"; sha256="1987vn13b5j914vkzwbn7q1138b0xsjs55x5b2090kjk6kc900x8"; depends=[jsonlite pkgdepends withr yaml]; }; checkr = derive2 { name="checkr"; version="0.5.0"; sha256="14hkpfbw5ibdwz2jygir2f2bb2qgrj62gn3449n4dif31nswaj2f"; depends=[err]; }; cheddar = derive2 { name="cheddar"; version="0.1-638"; sha256="0y1kmm14f7fkxxyjvxiavzcy2bfflwp98yx7z98ib0v7dnn86vmx"; depends=[]; }; - cheem = derive2 { name="cheem"; version="0.2.0"; sha256="0l8mbhl8jhwsikhy2nakdp21zz9k71fanhznjcqlpy7m7aqagp7i"; depends=[data_table DT ggplot2 magrittr plotly Rcpp shiny shinycssloaders shinythemes spinifex]; }; cheese = derive2 { name="cheese"; version="0.1.1"; sha256="1r4n9li33am0bsyl57kzg1m9g4w0pzbw6garcdp3qk7lwqxy2y26"; depends=[dplyr forcats kableExtra knitr magrittr purrr rlang stringr tibble tidyr tidyselect]; }; chemCal = derive2 { name="chemCal"; version="0.2.3"; sha256="0f0d0ljym745scnfdx0n0jp86g4r51gylcab3h7ykpaizgpah24r"; depends=[]; }; chemmodlab = derive2 { name="chemmodlab"; version="2.0.0"; sha256="01af0j24vymxiqahwhcf4kp0x603yllvlgcxnybsi2wnzm71swk7"; depends=[caret class e1071 elasticnet KernSmooth lars MASS MSQC nnet pls pROC randomForest rpart tree]; }; @@ -7000,11 +7032,9 @@ in with self; { cherry = derive2 { name="cherry"; version="0.6-14"; sha256="03ipvd2ldzk7xsalkgcx0cyp9cp9b8qqjvz8nl0am412j3z9i5wg"; depends=[bitops hommel lpSolve]; }; cherryblossom = derive2 { name="cherryblossom"; version="0.1.0"; sha256="1fn0xi65y0w1gmyrjlh8lb2is34r2dc5bym0ynrgjv8h595nzhwp"; depends=[]; }; chess = derive2 { name="chess"; version="1.0.1"; sha256="0b0lz8r48bvksjnh385p1ni22hw1yvs6255pjbpj49ga9dwziin0"; depends=[cli magrittr purrr reticulate rsvg]; }; - chessR = derive2 { name="chessR"; version="1.5.2"; sha256="1czv5y4ybbi15b87959vri25fy31yv2l2cdd5q6p9fw291kj1qnp"; depends=[curl dplyr httr jsonlite lubridate magrittr purrr rlang rvest stringr tidyr xml2]; }; chest = derive2 { name="chest"; version="0.3.6"; sha256="12n65l4r85cr16c3p2w1krnqnxkvalrpi8xnbzw4y2m0sp42ydgl"; depends=[broom dplyr forestplot ggplot2 MASS speedglm survival tibble]; }; chi = derive2 { name="chi"; version="0.1"; sha256="1y91mwahj4j2wz0y5k5vdpq7ygq834h8jkn37n74lqnwvv1968rr"; depends=[]; }; chicane = derive2 { name="chicane"; version="0.1.8"; sha256="0963r5jzyjihidh18ny9nqkim00bys3psdgrxhbah43bbl0kx43r"; depends=[bedr data_table doParallel foreach gamlss gamlss_tr iterators knitr MASS rmarkdown]; }; - chickn = derive2 { name="chickn"; version="1.2.3"; sha256="1d3xl2pigan6vb29nk2ks04dsl5vy16cv9z7miskmhcqcx2wm1qb"; depends=[bigstatsr doParallel doRNG foreach MASS mvnfast nloptr pracma Rcpp RcppArmadillo RcppParallel Rdpack rmio zipfR]; }; childdevdata = derive2 { name="childdevdata"; version="1.1.0"; sha256="016x6xhqq1mfqlj9m5qv63k639xnqnrf5h6rdcyaa8sxn7nv34zm"; depends=[]; }; childesr = derive2 { name="childesr"; version="0.2.3"; sha256="1a58s0zph4mfmh9sdfbv7yaa20lx5gi0mca0ikzarfwxjl5knp39"; depends=[DBI dbplyr dplyr jsonlite magrittr purrr RMySQL]; }; childsds = derive2 { name="childsds"; version="0.8.0"; sha256="1vv02kbw17b8zva2yc1qgi750z9yhyfv5xbig29dhyzvj8k00yvb"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr purrrlyr reshape2 tibble tidyr VGAM]; }; @@ -7029,7 +7059,6 @@ in with self; { choroplethrMaps = derive2 { name="choroplethrMaps"; version="1.0.1"; sha256="0ghqb2d1h0qkbcsll6ck2qk5sfvdwsrlh3phlbsjbak30832j7fr"; depends=[]; }; christmas = derive2 { name="christmas"; version="1.1.1"; sha256="0lxz71vbfqngkn4mg0c74ainww3vbzn8f4s5kmnw5bsd2mmwism7"; depends=[animation]; }; chromConverter = derive2 { name="chromConverter"; version="0.2.1"; sha256="0mpakgcqmpw0s7vcndqfmd2n2imn35nh5nkps07aj0vgd7z9ib8w"; depends=[magrittr purrr readr readxl reticulate stringr tidyr xml2]; }; - chromatographR = derive2 { name="chromatographR"; version="0.4.4"; sha256="15m74ijyh7dw4g2yigw4nf0gwbx7qlqb05pd2kzxbjckyhd449nb"; depends=[chromConverter dynamicTreeCut fastcluster lattice minpack_lm ptw pvclust scales smoother]; }; chromer = derive2 { name="chromer"; version="0.3"; sha256="08sj7x391y8jv3wc3v3blvsl501jkx3li928hb16niszx6a4w58x"; depends=[dplyr httr tibble]; }; chromoMap = derive2 { name="chromoMap"; version="4.1.1"; sha256="1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43"; depends=[htmltools htmlwidgets]; }; chromote = derive2 { name="chromote"; version="0.1.1"; sha256="0aa9lsnvcq25xd7hk2n33vlrvihad7943x9fda891adjvsnjg57q"; depends=[curl fastmap jsonlite later magrittr processx promises R6 rlang websocket]; }; @@ -7037,7 +7066,7 @@ in with self; { chron = derive2 { name="chron"; version="2.3-58"; sha256="1l36yy9jq6hxkg9rfbsggwhjsb33scb56di0klmw4c73rllcczq5"; depends=[]; }; chronicle = derive2 { name="chronicle"; version="0.3"; sha256="0yfrxr93fbxgpxjs1gb56pdx1kk4nn9xvy2csgl1rhzrgbl343m3"; depends=[data_table dplyr DT dygraphs ggplot2 glue knitr magrittr plotly prettydoc purrr readr rlang rmarkdown rmdformats scales skimr viridis zoo]; }; chronicler = derive2 { name="chronicler"; version="0.2.0"; sha256="0nnv8mflvd8hw8dkgqcx9kb3dwzrzfr7hrk2l5kjdzs8xj3v6g63"; depends=[clipr diffobj dplyr maybe rlang stringr tibble]; }; - chronochrt = derive2 { name="chronochrt"; version="0.1.1"; sha256="0jk9qw82nq5db3b4lzny3mmbynahs862yxgs2zliliwpzfgb8vxm"; depends=[dplyr ggplot2 magick magrittr readr rlang tibble tidyr tidyselect]; }; + chronochrt = derive2 { name="chronochrt"; version="0.1.2"; sha256="0r8aqx74c4rxacqf47hinpf5fy3lypxd5a1g7iqb1rbk1z4mkfj6"; depends=[dplyr ggplot2 magick magrittr readr rlang tibble tidyr tidyselect]; }; chronosphere = derive2 { name="chronosphere"; version="0.4.1"; sha256="1x4w4kap7cwkmrq4v6bvhlzm299i8chh4k02873ipnnqrhjxdhka"; depends=[raster sp]; }; chunkR = derive2 { name="chunkR"; version="1.1.1"; sha256="1kw3hsx5k4cdicx0hc1v0mf2nzvqg95shx2xv05vb2pass48qw48"; depends=[Rcpp]; }; chunked = derive2 { name="chunked"; version="0.6.0"; sha256="1j16am4nzwy2ckisksl5mk8h05ala6lpdd5qrb1gwyrhli4lx45a"; depends=[DBI dplyr LaF progress rlang]; }; @@ -7053,6 +7082,7 @@ in with self; { cinaR = derive2 { name="cinaR"; version="0.2.3"; sha256="0kdf3xbhg7yhpr67fqbbwqm16fvv3dj9f7bvfqliy3xhpxpg23qi"; depends=[ChIPseeker DESeq2 dplyr edgeR fgsea GenomicRanges ggplot2 ggrepel limma pheatmap preprocessCore RColorBrewer sva TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene writexl]; }; cinaRgenesets = derive2 { name="cinaRgenesets"; version="0.1.1"; sha256="0pz3iw559d8rsxmnwd1cqcpv8qnnh9bfvc9ydzwznx8jczbldls8"; depends=[]; }; cinterpolate = derive2 { name="cinterpolate"; version="1.0.0"; sha256="1aw6hs41xin2hhgmi4pr5510v4sn6x735lachpc5gpbxch5h3f82"; depends=[]; }; + cipheR = derive2 { name="cipheR"; version="1.0.0"; sha256="01h8mh2xlz1kkwm3nbiw8lpjlkjc19x5x8dq1yxfwdkq5yjjkyaa"; depends=[]; }; cir = derive2 { name="cir"; version="2.2.1"; sha256="19xnqd13b5adwnzq7m0zgwrbs03fz11krlnkxza3kmcz0xzyd2s0"; depends=[]; }; circacompare = derive2 { name="circacompare"; version="0.1.1"; sha256="15vpnh20wni2wmp86xql9737kbxbi28s9a4pi3rihr1w5mcgqfaj"; depends=[ggplot2]; }; circle = derive2 { name="circle"; version="0.7.2"; sha256="0nn14ky8df8ra03sh9ds7lkcksf9lysc1981dh19pca7iqbdydkx"; depends=[cli httr jsonlite]; }; @@ -7068,7 +7098,7 @@ in with self; { cities = derive2 { name="cities"; version="0.1.0"; sha256="0cka12km9fyqjsj7yl3wpzsq9pln7yzjxdq430441hsww8rr80l7"; depends=[dplyr ggplot2 ggthemes plotly tidyr]; }; cito = derive2 { name="cito"; version="1.0.0"; sha256="1mrcnrflhkzihjzpgaw4sq6a2p56p184dz3qfk2g50m0rism2qmr"; depends=[checkmate coro torch]; }; citrus = derive2 { name="citrus"; version="1.0.2"; sha256="1pzzyppqfh3qvc1xi2947lnshv7z2c21r8fribhc1avj76j26q5y"; depends=[clustMixType dplyr GGally ggplot2 RColorBrewer rlang rpart rpart_plot stringr tibble treeClust]; }; - ciu = derive2 { name="ciu"; version="0.5.0"; sha256="01fg5awbf35qparry0z3kl60kww8rbaqgi2b81vmbl77bls0my7l"; depends=[crayon ggplot2 Rcpp]; }; + ciu = derive2 { name="ciu"; version="0.6.0"; sha256="0pqs8ivbybbrjar978bl05awgaks33nqfm7l9z68iv2sj4a9hv21"; depends=[crayon ggplot2 Rcpp]; }; ciuupi2 = derive2 { name="ciuupi2"; version="1.0.1"; sha256="04x02qmqqyrc4h4z4mpl4zn5vr9y28k6j6n30fbr9q238zd543db"; depends=[functional nloptr pracma PreciseSums statmod]; }; civis = derive2 { name="civis"; version="3.0.0"; sha256="12q96bj21832zqqbisfxmnpqw7w72v350lyf7cpjgr7cq7b51brd"; depends=[future httr jsonlite memoise]; }; cjar = derive2 { name="cjar"; version="0.1.2"; sha256="0rq9ryhp2h3p927227chzwbjn7x22h9ckkha2kclhx0jh7swf5y7"; depends=[assertthat dplyr glue httr jose jsonlite lubridate magrittr memoise openssl progress purrr R6 rlang stringr tibble tidyr vctrs]; }; @@ -7106,7 +7136,7 @@ in with self; { cliapp = derive2 { name="cliapp"; version="0.1.1"; sha256="0v62lbcsja0xmlpqcps370n5c7bk4j2n8pwh9xyif5s4wpf82qz1"; depends=[cli crayon fansi glue prettycode progress R6 selectr withr xml2]; }; clickR = derive2 { name="clickR"; version="0.8.3"; sha256="1cwf41j4l9y5vji6zwj7j2na0xg5jfwjqgygqmpwb1gffqxak319"; depends=[beeswarm stringdist]; }; clickstream = derive2 { name="clickstream"; version="1.3.1"; sha256="0z1yy5lr9m5x9ybimjy3f6kn490abdi038xi0qw7ny80f1ca6ry7"; depends=[arules ClickClust data_table ggplot2 igraph linprog MASS plyr reshape2 Rsolnp]; }; - clidatajp = derive2 { name="clidatajp"; version="0.5.0"; sha256="15nqv6b7hwsh97wjwlanfbzaiilz2lwmb2pm89vm3lsik3m3nvph"; depends=[dplyr magrittr rlang rvest stringi stringr tibble tidyr]; }; + clidatajp = derive2 { name="clidatajp"; version="0.5.1"; sha256="1s64vsnam64n1jvwc7sw5nd256gs2w69f7ywgcpq1ypa8vaw0qs4"; depends=[curl dplyr httr magrittr rlang rvest stringi stringr tibble tidyr]; }; cliff = derive2 { name="cliff"; version="0.1.2"; sha256="0d7aswvsqlyai3rxxbfy08cs4qbi9fjjls62y1p95bmnhq1b3bwf"; depends=[ellipsis processx rlang]; }; clifford = derive2 { name="clifford"; version="1.0-8"; sha256="0gi4jajng1v0a45dl5qv8v279bm4lzfbkdsqp0bd1vil2ns1934j"; depends=[BH disordR magrittr mathjaxr partitions Rcpp]; }; clifro = derive2 { name="clifro"; version="3.2-5"; sha256="1p2xy5r9axkj8yk6ywaq0w5i00bdfm15drjz227nx8p4vd3q6si8"; depends=[ggplot2 httr lubridate magrittr RColorBrewer reshape2 rvest scales stringr xml2]; }; @@ -7117,7 +7147,6 @@ in with self; { climatrends = derive2 { name="climatrends"; version="0.4"; sha256="0w1qanbmannz7bmibss6s5blcx68gjl7c2r5h2n1irpdxs0s5sz3"; depends=[]; }; climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-11"; sha256="01ax0kas43g3h21ixzc80f9gl4m9846gmk8v48rr0gkhcmbcc6jx"; depends=[PCICt Rcpp]; }; clime = derive2 { name="clime"; version="0.5.0"; sha256="15xc4cvllf6qpwa8a0lvsbivx4cricbgn0v3wc70xy69ngfa7zaj"; depends=[lpSolve]; }; - climetrics = derive2 { name="climetrics"; version="1.0-5"; sha256="0jy6npilv21hm0cwv5dmxwbz1x5lw75a14n9nbp743864z6jrz30"; depends=[raster rts sp terra xts yaImpute zoo]; }; climextRemes = derive2 { name="climextRemes"; version="0.3.0"; sha256="0c3zh64pipdq5266g8p6c6h0qdwfmigfh6s63ljqvr1ysv32k57g"; depends=[boot extRemes]; }; climwin = derive2 { name="climwin"; version="1.2.3"; sha256="1r2x5941k8l9z3517389y120sfhrskdpchc0pkibznza8aa95r85"; depends=[evd ggplot2 gridExtra lme4 lubridate Matrix MuMIn nlme numDeriv RcppRoll reshape]; }; clinDR = derive2 { name="clinDR"; version="2.3.5"; sha256="0p5pq0kpm8sfxv1a1dp2wyykp1qqbxbjz0c4f20igc25aazd7kaz"; depends=[doParallel DoseFinding dplyr foreach ggplot2 glue magrittr purrr rstan shiny tibble tidyr waiter]; }; @@ -7125,11 +7154,11 @@ in with self; { clinPK = derive2 { name="clinPK"; version="0.11.1"; sha256="1mzws5pgczdghxl2h0zgrp44in80kplnhy3gc7g4g8wssjwywbb3"; depends=[]; }; clinUtils = derive2 { name="clinUtils"; version="0.1.3"; sha256="1qv7xxcmvrsm7lldfa4az9vbwzldgg5xs1312xqhalvc4v6pi0bg"; depends=[crosstalk data_table DT haven htmlwidgets knitr plyr viridisLite]; }; clinfun = derive2 { name="clinfun"; version="1.1.0"; sha256="1fca5nd36xzb50ccbwrb4xxvzhqg7s60smwr42k5z9sfywfh79y8"; depends=[mvtnorm]; }; - clinicalsignificance = derive2 { name="clinicalsignificance"; version="1.0.0"; sha256="0nkf60jgl2w4f0j8kxb7pf2xf9718lnia2sl0ihj29fnl4kmhxs1"; depends=[checkmate crayon dplyr ggplot2 insight lme4 magrittr purrr rlang tibble tidyr]; }; + clinicalsignificance = derive2 { name="clinicalsignificance"; version="1.2.0"; sha256="017myylm3hh256zqis80f3y7y44p706wzkf8klw4d0frai7mrfwv"; depends=[checkmate crayon dplyr ggplot2 insight lme4 magrittr purrr rlang tibble tidyr]; }; clinmon = derive2 { name="clinmon"; version="0.6.0"; sha256="0cd5mrirfll0zbm9k8glwdqnh4qy4dlfnsypr3xhyf6ppgm35hlv"; depends=[signal]; }; clinsig = derive2 { name="clinsig"; version="1.2"; sha256="1wgfl9kks57yizrf8z6x7dhmbl3a80q8nnj3a5n2hpc9yr8l9ijf"; depends=[]; }; clinspacy = derive2 { name="clinspacy"; version="1.0.2"; sha256="134nvkircy1a1rmsg2nszk2r8bcdmikmrx6plchdz8gxyjd6jmya"; depends=[assertthat data_table magrittr rappdirs reticulate]; }; - clintools = derive2 { name="clintools"; version="0.9.6"; sha256="0zgv8vwa3ab2zwdrj8r7rc65ajpc2av9zks5vs9q93byzrxnz0f7"; depends=[ggplot2 lme4 signal xml2]; }; + clintools = derive2 { name="clintools"; version="0.9.7"; sha256="0v74706imgk5kkya3cj14c78dxji2zgxyasfm4x7k2jda20z3fap"; depends=[ggplot2 lme4 signal xml2]; }; clipp = derive2 { name="clipp"; version="1.1.1"; sha256="1yddihmjg90j9id825lyanqpfm4i67mdgvdm53pz20p8fcq4mlzw"; depends=[]; }; clipr = derive2 { name="clipr"; version="0.8.0"; sha256="1s9vvv3cxnz8w11gsi8z9ddv9jzib5qf5qqxnwqrrv7vj8cr7hij"; depends=[]; }; clisymbols = derive2 { name="clisymbols"; version="1.2.0"; sha256="1q7gi2zmykhzas9v8fdnbpdq7pzdcpbhim1yxvd2062l777g4j86"; depends=[]; }; @@ -7147,11 +7176,12 @@ in with self; { clr = derive2 { name="clr"; version="0.1.2"; sha256="088ks9lrhlyvg3yvlfmb0091yp6qp5bzg9h5r6ryv3bk6y56sajx"; depends=[dplyr lubridate magrittr]; }; clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; }; clubSandwich = derive2 { name="clubSandwich"; version="0.5.8"; sha256="1y894n35l4lzqm15ifxjnpnh95dldsfivv4098571yqf1z4a253q"; depends=[sandwich]; }; - clue = derive2 { name="clue"; version="0.3-62"; sha256="1lhybs6rhq8zs7q15ahng7c93liiygr64i2zwg3ya6maqji3ynjp"; depends=[cluster]; }; + clue = derive2 { name="clue"; version="0.3-63"; sha256="0c402fb3r1cxd0j6ikjhssq2k22lbnsq4k7vjpgvyx4a4ly2h4yr"; depends=[cluster]; }; clusTransition = derive2 { name="clusTransition"; version="1.0"; sha256="0q5cxkb5mrygyp2zg177rwn5cgpnyqln7yjvjflb48ll3jr98342"; depends=[flexclust]; }; cluscov = derive2 { name="cluscov"; version="1.1.0"; sha256="0345v5r6b53243h5bir29v0w77pmwjqjkqfrjnk5j5r1wbh98q1w"; depends=[MASS quantreg]; }; clusrank = derive2 { name="clusrank"; version="1.0-3"; sha256="0m5yggbmp3kjh98nkmwy4k8lnd2jxp4c5gyysgvpp5zypakjc1cc"; depends=[MASS Rcpp]; }; clust_bin_pair = derive2 { name="clust.bin.pair"; version="0.1.2"; sha256="11lqd3vmx4kg08n6iv9na8rra49dkldx4f8jyf43hppbjrbvfinm"; depends=[]; }; + clustAnalytics = derive2 { name="clustAnalytics"; version="0.5.2"; sha256="1p9417l9ccfgng616cy6rl2i3rik4i5m4frpcw5k4szrxa3rdb81"; depends=[boot dplyr fossil igraph mcclust mclust Rcpp Rdpack truncnorm]; }; clustDRM = derive2 { name="clustDRM"; version="0.1-0"; sha256="1c5z08a15scp3nrwyh0c03pdaawvm3ivbygqpbglwxim7zf73rd2"; depends=[caret doParallel DoseFinding DT foreach IsoGene MCPMod multcomp ORCME ORIClust pheatmap RColorBrewer readr shiny]; }; clustEff = derive2 { name="clustEff"; version="0.3.0"; sha256="1j8v0qm6mqbh08kq8jahpgg6ygab6ac22lzzpcc2h72zm7r7cacr"; depends=[cluster fda ggplot2 ggpubr qrcm]; }; clustMD = derive2 { name="clustMD"; version="1.2.1"; sha256="0w4s9dab2mm5x0xibyl6s101c64if945a2cmwin9psd95p76mcny"; depends=[ggplot2 MASS mclust msm mvtnorm reshape2 truncnorm viridis]; }; @@ -7185,13 +7215,14 @@ in with self; { cmaRs = derive2 { name="cmaRs"; version="0.1.2"; sha256="1s92rmb5wxll2bwmmc95z59plpxfz0qn1l5qaf95zgp1ynwzybnm"; depends=[AUC earth Matrix Rmosek ROCR Ryacas0 stringr]; }; cmaes = derive2 { name="cmaes"; version="1.0-12"; sha256="0wk8zkf585ipnxajmibip85cyz7wc5br0cph3cvnacbh7yf2zvay"; depends=[]; }; cmaesr = derive2 { name="cmaesr"; version="1.0.3"; sha256="03zx2nrw24wmmjjpyh8pswasjjq0amf0g375fm2b3s111dx8fbj9"; depends=[BBmisc checkmate ggplot2 ParamHelpers smoof]; }; - cmcR = derive2 { name="cmcR"; version="0.1.9"; sha256="06pw7lbp85xfnglcc86h1b4ipy1igvf43ihpqm9m67d4jc9r6acs"; depends=[assertthat dplyr ggnewscale ggplot2 imager magrittr purrr quantreg rlang scales stringr tibble tidyr x3ptools zoo]; }; + cmbClust = derive2 { name="cmbClust"; version="0.0.1"; sha256="01yjiscnligy6wpn752sqm53xhx0qxjbfd4dc8p7c31kbzfpif2x"; depends=[]; }; + cmcR = derive2 { name="cmcR"; version="0.1.11"; sha256="15d85mjy6y68jysji0910kg9vp69iz4pbb2l4vmn501xq4md3kx3"; depends=[dplyr ggnewscale ggplot2 ggplotify imager magrittr patchwork purrr quantreg rlang scales stringr tibble tidyr x3ptools zoo]; }; cmce = derive2 { name="cmce"; version="0.1.0"; sha256="0d52ci906zbd4q43qylcyw93acxh7f20jn3r0k74ynyy47131dnd"; depends=[]; }; cmdfun = derive2 { name="cmdfun"; version="1.0.2"; sha256="1pbcq7hi2lcmqnghmy3q2fsk0c9fy5m0637acyzmc096fxbx723j"; depends=[magrittr purrr R_utils rlang testthat usethis]; }; cmenet = derive2 { name="cmenet"; version="0.1.2"; sha256="0v3fassl21wdyx7s4shsib936fr41qr9hxjgcjc2f8az0ljd1p70"; depends=[glmnet hierNet MASS Rcpp RcppArmadillo sparsenet]; }; - cmfrec = derive2 { name="cmfrec"; version="3.4.3-2"; sha256="0qzbkzsgr9haf48rhi70chsxbppmq7l19q3hmggfp12rziaa8y5l"; depends=[]; }; + cmfrec = derive2 { name="cmfrec"; version="3.5.0"; sha256="1x51pfjyxyjrpzrh0aglnm8z9wa9dqdjxpzwirxw8099wf647w67"; depends=[]; }; cmhc = derive2 { name="cmhc"; version="0.2.3"; sha256="17m4kiyw7x3sz7zb446y8sxq2s6f3yyqsqmll2k9d0sccrnah5f3"; depends=[aws_s3 digest dplyr httr readr rlang stringr tibble]; }; - cml = derive2 { name="cml"; version="0.0.5"; sha256="0j1awj84b68j13f7s0bs294sx7cdn9dch0vjclsnarwzv2alavx1"; depends=[MASS vegan]; }; + cml = derive2 { name="cml"; version="0.1.0"; sha256="10qwpgs64zhizid3l7i9ryx214w0kx0121dfkjmvmf00pdb685im"; depends=[vegan]; }; cmm = derive2 { name="cmm"; version="0.12"; sha256="0q6hs56hhi9vaanx7i7gg7ncv0h29lndla66g9chzmh3lchq3r20"; depends=[]; }; cmmr = derive2 { name="cmmr"; version="0.1.2"; sha256="0nik1pzd1rckalvn7xh6s699kkdjnra3q3bn5x16c1lmpz5bp2s4"; depends=[httr progress RJSONIO]; }; cmna = derive2 { name="cmna"; version="1.0.5"; sha256="161qc7q88ajm3l62bq03lpf35bdii1w1d111085zvs3hrf09iybw"; depends=[]; }; @@ -7215,11 +7246,10 @@ in with self; { cns = derive2 { name="cns"; version="0.1.0"; sha256="1kn1cq32pp05ag22n7iwjxn6lxpqn443npzk6vdskjm5pbnsc33k"; depends=[]; }; cnum = derive2 { name="cnum"; version="0.1.3"; sha256="0iphbx5ii4ij0bi9nqdz793i4gk2164jlgz5xn8yzsayjmizhdk2"; depends=[BH Rcpp stringr]; }; coRanking = derive2 { name="coRanking"; version="0.2.3"; sha256="09dq4xxpi632jb9vh96rsy2g51sn6apbccx9c8073hfsm078b4w6"; depends=[]; }; - coala = derive2 { name="coala"; version="0.7.0"; sha256="00rwjdl3nscrl7ldb9j5l12xhjg1fi8li5l9xyx9gw28ixkznl6a"; depends=[assertthat digest R6 Rcpp RcppArmadillo rehh scrm]; }; coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-4"; sha256="09abhcp6y98378kf018inhxpkkirch5636nskywn0p6shp2q278x"; depends=[ape coda lattice Matrix phangorn]; }; coalitions = derive2 { name="coalitions"; version="0.6.24"; sha256="1ya9g2i1ds2w4hxbacmql67a3hh1grycj74g6b7xb05h478ym87n"; depends=[checkmate dplyr ggplot2 gtools jsonlite lubridate magrittr purrr RCurl rlang rvest stringr tibble tidyr xml2]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-6"; sha256="1g9hxyp2vdhq1zr18qlf2aqwp9d9hr07k6grmvblj2xrwlzfvc1p"; depends=[MCMCpack]; }; - cobalt = derive2 { name="cobalt"; version="4.4.0"; sha256="00zggkpqvgsabddrg1cmdvwk8rx4zfdyila9qdg000x7bbbm8nix"; depends=[backports crayon ggplot2 gridExtra gtable rlang]; }; + cobalt = derive2 { name="cobalt"; version="4.4.1"; sha256="1h4z6v5k9v4fsgygbc6v20p1ld1d7f9jgygasyk40abx1rd0r8sf"; depends=[backports crayon ggplot2 gridExtra gtable rlang]; }; cobiclust = derive2 { name="cobiclust"; version="0.1.0"; sha256="068cqrhx7lxsvcjb62rgrca7y20cybz4445bl1qc6k16ca4bh0m9"; depends=[cluster]; }; cobs = derive2 { name="cobs"; version="1.3-5"; sha256="04f6a6gp11p93j2k35mbrfqgjx5qsgi3dj1085a5v5s0z6l7vbkz"; depends=[quantreg SparseM]; }; coca = derive2 { name="coca"; version="1.1.0"; sha256="1lh7q3ip1jaz5zj5zcnd5whwpjw6zcrxs6j0j8mnmjsnw2kr4m5n"; depends=[caret cluster fpc glmnet Matrix nnet pheatmap RColorBrewer sparcl]; }; @@ -7229,7 +7259,7 @@ in with self; { cocron = derive2 { name="cocron"; version="1.0-1"; sha256="0dl14y9v9kndy5gzhhbhq3f31ja724y1hra40givy6bij7h2cj30"; depends=[]; }; coda = derive2 { name="coda"; version="0.19-4"; sha256="13z5dwfpnyyhpsbpg4xr9g5c1685jhqj90f4x4qkcykr6kykqba2"; depends=[lattice]; }; coda_base = derive2 { name="coda.base"; version="0.5.2"; sha256="0pcgjsfcgz5fj949szahkppb9rb9cba47b1galm4i6c3qp0yn18a"; depends=[jsonlite Matrix Rcpp RcppArmadillo]; }; - coda4microbiome = derive2 { name="coda4microbiome"; version="0.1.1"; sha256="0ckd20wajqj2mxz7l8w12pvc54xys0a9fg0h2qw7kjbhgx5hmi6j"; depends=[corrplot ggplot2 ggpubr glmnet plyr pROC qpdf]; }; + coda4microbiome = derive2 { name="coda4microbiome"; version="0.1.2"; sha256="1f05lnv59scq2m3jj9fajmcivnfkpnwzqdxkmxa9ik0ydsa4h5wn"; depends=[corrplot ggplot2 ggpubr glmnet plyr pROC]; }; codacore = derive2 { name="codacore"; version="0.0.4"; sha256="047klw705a4x0b93xvwd6839j30gg9jl1dgwdnkcqjiwn9jx8fb3"; depends=[gtools keras pROC R6 tensorflow]; }; codalm = derive2 { name="codalm"; version="0.1.2"; sha256="09q7i96wga55xl8wwkb4i2sisn97wd21zqpmasykpi1aamzysqki"; depends=[future future_apply SQUAREM]; }; codeCollection = derive2 { name="codeCollection"; version="0.1.2"; sha256="0jimahw008l2x4c646dwf6f5vw9xlh8rfm7l6kgj8q4iymzbr8rm"; depends=[Epi]; }; @@ -7247,7 +7277,7 @@ in with self; { codified = derive2 { name="codified"; version="0.3.0"; sha256="0a5k0zqw1dxa3v1hzh3s43zlpyzpgxnbq2rhz8kq0g8lxqlki3pc"; depends=[checkmate dplyr kableExtra knitr rlang tibble tidyr]; }; codingMatrices = derive2 { name="codingMatrices"; version="0.3.4"; sha256="05ndy51wpqyk1b3nq95zn6lxgzg5hzqbr2w7b2v8ar291sxvc4g7"; depends=[fractional Matrix]; }; codyn = derive2 { name="codyn"; version="2.0.5"; sha256="1iqlh3ydnqi7s2b3fa2zgb05j763qgxriys4piawwmgrdrvd3d9q"; depends=[assertthat permute vegan]; }; - coefa = derive2 { name="coefa"; version="1.0.1"; sha256="1zi5x3wpdjbf22p50aax8h22hw96knwp9s3fzaz2v5p6j0b13dnj"; depends=[openxlsx psych purrr]; }; + coefa = derive2 { name="coefa"; version="1.0.2"; sha256="0qb78kbr7z307165j7q17bm1p9aq6p4iy2j1sbpqks4bvkih9drs"; depends=[openxlsx psych purrr]; }; coefficientalpha = derive2 { name="coefficientalpha"; version="0.7"; sha256="0li1js501sa8m0ba76ymn4lz5y4np7kf96gnxz9kypg50kd58yis"; depends=[lavaan rsem]; }; coefplot = derive2 { name="coefplot"; version="1.2.8"; sha256="0qxa57sm5hncmd4mxab1c7hk34n2s5fsn51ck6ik2ciynhgcqxvn"; depends=[dplyr dygraphs ggplot2 magrittr plotly plyr purrr reshape2 tibble useful]; }; coenocliner = derive2 { name="coenocliner"; version="0.2-3"; sha256="07hik9y84nj1l83spcp1hq9lj960zsg3v0i8rk0xfv25grrakp85"; depends=[]; }; @@ -7260,7 +7290,7 @@ in with self; { cognitoR = derive2 { name="cognitoR"; version="1.0.2"; sha256="1pz4wk7vdc1nhm76kz912hyyc9c408qsldfr9dygqvran4xvqm9g"; depends=[base64enc config dplyr httr jsonlite paws shiny shinyjs yaml]; }; cohortBuilder = derive2 { name="cohortBuilder"; version="0.1"; sha256="1j6ksdynss3wmizcqb2in7fpcllfpsd4xw0xklcn9r94cdnhgrz4"; depends=[dplyr formatR ggplot2 glue jsonlite magrittr purrr R6 rlang tidyr yaml]; }; cohorts = derive2 { name="cohorts"; version="1.0.1"; sha256="0g3xllmk5n4s2w10a2460v735bsc2xnkxgcr9zkvl8sz8rczrs2n"; depends=[data_table dplyr dtplyr magrittr tibble tidyr zoo]; }; - cohorttools = derive2 { name="cohorttools"; version="0.1.4"; sha256="1zpf3qgzkn34wc36r89ymzfx4fvlgl7x1yiwdwzzd20xv3nx2b5h"; depends=[cmprsk DiagrammeR DiagrammeRsvg Epi ggplot2 rsvg survival]; }; + cohorttools = derive2 { name="cohorttools"; version="0.1.6"; sha256="17gz4887vhkk0qr5mcv0vcfaxiws1pk1fdd4y8wqbl57ikn5i9vs"; depends=[cmprsk DiagrammeR DiagrammeRsvg Epi ggplot2 mgcv rsvg survival]; }; coil = derive2 { name="coil"; version="1.2.3"; sha256="023sn4waf8wb99ryxf0biag8rfg3j3sslf8fw7d00llzci8px5zj"; depends=[ape aphid seqinr]; }; coin = derive2 { name="coin"; version="1.4-2"; sha256="1cpv7jx840inzg98bkhrb5yscx0gpag6br237r5qpnc2gbrd2ikm"; depends=[libcoin matrixStats modeltools multcomp mvtnorm survival]; }; coinmarketcapr = derive2 { name="coinmarketcapr"; version="0.4"; sha256="1h95fm32w03gxjka71n41lxkinfwpal4dl6hmhfdph8wywn7y50j"; depends=[cli crayon curl data_table ggplot2 jsonlite]; }; @@ -7310,6 +7340,7 @@ in with self; { combinIT = derive2 { name="combinIT"; version="2.0.0"; sha256="1l2ypnrm2qi1z10c2qyyaqqcjgk3mgsh80b3j9zrjwq9zdakrhi5"; depends=[mvtnorm Rcpp RcppArmadillo]; }; combinat = derive2 { name="combinat"; version="0.0-8"; sha256="1h9hr88gigihc4na7lb5i7rn4az1xa7sb34zvnznaj6pdrmwy4qm"; depends=[]; }; combinationpvalues = derive2 { name="combinationpvalues"; version="0.1.4"; sha256="0n5dhgss8mrxshfixpc10g1p7l06hcn3fbk7l9sp92ap64kalz6c"; depends=[chi dplyr spatstat_utils]; }; + combinatorics = derive2 { name="combinatorics"; version="0.1.0"; sha256="02v0fz6qw08v4krnaj6ph76d6n2al12c48vl81ajj5hvlnjwldhg"; depends=[]; }; combinedevents = derive2 { name="combinedevents"; version="0.1.1"; sha256="0fwsxn2ziapax1wy9k57n76z3nxqb22vfbp5r3y6xg3aparxdxpz"; depends=[lubridate magrittr rlang stringr]; }; combiroc = derive2 { name="combiroc"; version="0.2.3"; sha256="0plg8w96jr5lnishjmcxa1a3nw14jyfaybgr0vcimhx32zv6b14c"; depends=[devtools dplyr ggplot2 gtools moments pROC stringr tidyr]; }; combiter = derive2 { name="combiter"; version="1.0.3"; sha256="11pcvrpbvkzkjwks2z6ww7s9d5fkh8zl0jw52a5ya3y1wkqcs3n6"; depends=[iterators itertools Rcpp]; }; @@ -7317,6 +7348,7 @@ in with self; { cometExactTest = derive2 { name="cometExactTest"; version="0.1.5"; sha256="0ar9axm9cd1wd937xcmsmd7xqilnfyab8gsrpkiqpc3fjh86qyrp"; depends=[dplyr]; }; cometr = derive2 { name="cometr"; version="0.2.0"; sha256="0fbg1lfw0q4lfk4svflfwjfmwxbrdvmrvxry90xp39i7g8zd2ahd"; depends=[callr httr jsonlite R_utils R6 yaml]; }; comf = derive2 { name="comf"; version="0.1.11"; sha256="17hby9qah3bd4p3rfhd1lf3yaz5qxxd4p5aaq1ql7jdixb9p51q0"; depends=[plyr reshape]; }; + commafree = derive2 { name="commafree"; version="0.1.0"; sha256="0dn6ps6nvinwaxc8js5bq2kg78nzrf7ijbi77c7jan8z50d19m0p"; depends=[]; }; commentr = derive2 { name="commentr"; version="1.0.4"; sha256="0anlcbk8rj0yr8i23qmr6v5ws0695nkc3mvgr6pnq1fg2d4c4brj"; depends=[stringr]; }; common = derive2 { name="common"; version="1.0.5"; sha256="06xjpbrpmzkphwxr2z8di8qig9qf0d2g9jg7142nvwmm2mf05iwg"; depends=[this_path]; }; commonmark = derive2 { name="commonmark"; version="1.8.1"; sha256="1gjwpmcxv15y1jg9f7kzp49s68kj1skjsh5g264f9lp37l4wpbcn"; depends=[]; }; @@ -7329,7 +7361,7 @@ in with self; { compare = derive2 { name="compare"; version="0.2-6"; sha256="0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"; depends=[]; }; compareC = derive2 { name="compareC"; version="1.3.2"; sha256="0r3d03yj5fjzfc6awc16x9420366dcy3nhvibjlrn0m10il714pc"; depends=[]; }; compareDF = derive2 { name="compareDF"; version="2.3.5"; sha256="1sq30ndlidpmyvpqkzhq5shy52i22p80lcfar3p8dqymndg1bgyl"; depends=[data_table dplyr htmlTable openxlsx rlang stringr tibble tidyr]; }; - compareGroups = derive2 { name="compareGroups"; version="4.5.1"; sha256="0ll770lj2j6nnjdpkij1wadd2nqppkdjcfglfx13kk5r5ldmfyq1"; depends=[chron flextable HardyWeinberg kableExtra knitr officer rmarkdown survival writexl]; }; + compareGroups = derive2 { name="compareGroups"; version="4.6.0"; sha256="0w44dk3ba9dq68kl2y5665h6l8j0w59mx70rwi58c77w3bqz0jry"; depends=[chron flextable HardyWeinberg kableExtra knitr officer rmarkdown survival writexl]; }; compareMCMCs = derive2 { name="compareMCMCs"; version="0.5.0"; sha256="0g3fzazfs6f8ni251ilzk0q65hvgfhglly7v4rmkl4jwhzvsz1yr"; depends=[coda ggplot2 nimble R6 reshape2 xtable]; }; comparer = derive2 { name="comparer"; version="0.2.2"; sha256="1rhx9an7qi9r3cv2zpnb9qw0byg06zabg99v51mal218080r6rvm"; depends=[R6]; }; comparison = derive2 { name="comparison"; version="1.0-5"; sha256="0vg8s9j2xjzv7bidd59givxgcqzhdd29q84dj4ww2a6vkmq269r7"; depends=[isotone]; }; @@ -7339,13 +7371,13 @@ in with self; { competitiontoolbox = derive2 { name="competitiontoolbox"; version="0.7.1"; sha256="0s8n62hssx0qkznf0x6gw9yzlngiqgjw34k9wyhlh5iiwq4fyc3x"; depends=[antitrust ggplot2 rhandsontable shiny trade]; }; compicc = derive2 { name="compicc"; version="0.1.0"; sha256="1j2yy4dw3g96vpm3dq81dixhfzm3nqqawphmmg9hcsqir5f6xg9a"; depends=[irr]; }; completejourney = derive2 { name="completejourney"; version="1.1.0"; sha256="0ysbpmd7rglz3diy2cpcgvmmcnysradb4ddiwix7kbhzrhvhrdrs"; depends=[curl dplyr progress stringr tibble zeallot]; }; - complexNet = derive2 { name="complexNet"; version="0.1.0"; sha256="0jswxr16j7irjbfc5p5vgdaksh3gs8gyx3cwbs0acrpyykxpi5k7"; depends=[]; }; + complexNet = derive2 { name="complexNet"; version="0.2.0"; sha256="199zxqsbasd1j598srpb10y8mjw2l4plra1121i9sdsf40bvd7aw"; depends=[]; }; complexity = derive2 { name="complexity"; version="1.1.2"; sha256="0y1rlz456mny4d0kr8rx26qg5frr3zxsbzm1cc76h475vad4ns28"; depends=[combinat shiny]; }; complexplus = derive2 { name="complexplus"; version="2.1"; sha256="16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx"; depends=[expm Matrix]; }; complmrob = derive2 { name="complmrob"; version="0.7.0"; sha256="0dvkc5y53041agkjz3rl898hkq686pxzr6flf2qx1g3jbza3pk1y"; depends=[boot ggplot2 robustbase scales]; }; compositions = derive2 { name="compositions"; version="2.0-4"; sha256="1bqg0qqzsf92q0jb7hdjycr54bwv8rk7ajhvxgch5yslyqxpm73v"; depends=[bayesm MASS robustbase tensorA]; }; composits = derive2 { name="composits"; version="0.1.1"; sha256="0njz6yn3dxi5czzmp93lcz2xr5gphiii857s5jggygq0xdszlx86"; depends=[anomalize dobin dplyr fastICA forecast ggplot2 gridExtra ICS kableExtra otsad pracma rlang tibble tidyr tsoutliers]; }; - compound_Cox = derive2 { name="compound.Cox"; version="3.21"; sha256="0n0g56698w8mhlhizx8ji0q0r3qjmsjpyv5pfgy4xp4k3hi518l5"; depends=[numDeriv survival]; }; + compound_Cox = derive2 { name="compound.Cox"; version="3.23"; sha256="1iqhqwnrvvrzk0jyqgpsq7aa1pglmqsgxinxpv20588nhvjkxn60"; depends=[MASS numDeriv survival]; }; comprehenr = derive2 { name="comprehenr"; version="0.6.10"; sha256="1wlc06swm45nxg9hgik3wj832sr074i3p0j5kxm0i2r74klfy22w"; depends=[]; }; compute_es = derive2 { name="compute.es"; version="0.2-5"; sha256="00133s3l3g70xrfnxgxhvbjr8izvaj9h0c73iaiyjmlgj84x69m8"; depends=[]; }; comsimitv = derive2 { name="comsimitv"; version="0.1.5"; sha256="0g1b14bx0dgy7y24gxlj0r2sgiild14cvr1zmf37df7g3bswn112"; depends=[MASS vegan]; }; @@ -7353,7 +7385,6 @@ in with self; { con2aqi = derive2 { name="con2aqi"; version="0.1.0"; sha256="1gdd1y6xg26fz199hvryzsnp16qbsz13chqqxyxnkgrai1l72mhf"; depends=[]; }; con2lki = derive2 { name="con2lki"; version="0.1.0"; sha256="005bk3y7il94h7zlkdjlibm1zm9yplbbzlybdjxmckh67sr6d03x"; depends=[]; }; conStruct = derive2 { name="conStruct"; version="1.0.4"; sha256="1klhzsxrkbz16dnm3r2qxyq2z02zqrps9kij2jy6241ni9qmnn2f"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen rstan rstantools StanHeaders]; }; - conText = derive2 { name="conText"; version="1.1.0"; sha256="04zqahx01rqpa6wm4krnr7vfafcxgqblrd911qw7pfwvmjl2w92s"; depends=[dplyr fastDummies ggplot2 Matrix quanteda reshape2 stringr text2vec tidyr]; }; concatenate = derive2 { name="concatenate"; version="1.0.0"; sha256="1kvsw7vwa3hn97ff7r6z21h5ajs74azwv2dk4pzgyaasnbp778hw"; depends=[]; }; concatipede = derive2 { name="concatipede"; version="1.0.1"; sha256="1cmc0pcy9di1bxzj4kgbnvv1avd7xd6jzk43kni7fc5fkcq2jj3x"; depends=[ape dplyr igraph magrittr qualV readxl stringdist stringr tibble writexl]; }; concaveman = derive2 { name="concaveman"; version="1.1.0"; sha256="0b3fx3y60ibb73pqx5591jq1n86242qajfxbz3vzz6rxxspddlcz"; depends=[dplyr jsonlite magrittr sf V8]; }; @@ -7366,9 +7397,8 @@ in with self; { cond = derive2 { name="cond"; version="1.2-3.1"; sha256="1j0gf28mg2j6ahs83nk662bix1lb2c9184vn8sblw433zxqaa2ny"; depends=[statmod survival]; }; condGEE = derive2 { name="condGEE"; version="0.2.0"; sha256="09vbwpn4i37cn8gs9pr62mvzzbqrfm756370zas97kjbnmx8glbj"; depends=[numDeriv rootSolve]; }; condMVNorm = derive2 { name="condMVNorm"; version="2020.1"; sha256="115pxnff2ckdxx0avbs0hfdhh1sljiz1y6h7ggd5hidrxd3559m4"; depends=[mvtnorm]; }; - condSURV = derive2 { name="condSURV"; version="2.0.2"; sha256="1zw79rll44dx5vysfixfp684gf8c3c37xazwgrfzjbq54i3jwmir"; depends=[doParallel doRNG foreach KernSmooth np survival]; }; condTruncMVN = derive2 { name="condTruncMVN"; version="0.0.2"; sha256="1dicfa82yg8k83lnb5c17jnqwgkazpb8404kfzdf6ikmndwjn0zg"; depends=[condMVNorm matrixNormal tmvmixnorm tmvtnorm truncnorm]; }; - condformat = derive2 { name="condformat"; version="0.9.0"; sha256="151rpnrnbj5ilckf99m6k3c26r1sr94496kws9w91faxilvl180b"; depends=[dplyr gridExtra gtable htmlTable htmltools knitr magrittr openxlsx rlang rmarkdown scales tibble tidyselect]; }; + condformat = derive2 { name="condformat"; version="0.10.0"; sha256="1iyvghcz5x9kg4jbh4fl97rcwcvi8rcp6rngvgqiyzdg8sbfxkr6"; depends=[dplyr gridExtra gtable htmlTable htmltools knitr magrittr openxlsx rlang rmarkdown scales tibble tidyselect]; }; condir = derive2 { name="condir"; version="0.1.3"; sha256="09b0nfdi39mq0531bjzmk8wnmzkyvcd2q5fyk8lnam3n6fz3dg2y"; depends=[BayesFactor effsize knitr psych shiny xtable]; }; conditionz = derive2 { name="conditionz"; version="0.1.0"; sha256="0ijnsg6n3p3y8y9il012xg5if57hdzvrgxjcykfrrlil4m7ixn6c"; depends=[R6 uuid]; }; condmixt = derive2 { name="condmixt"; version="1.1"; sha256="1x6n3ylaa9ywvz7v63i2pvd2lxm95wq19xy741g9hy73ld7hd7zn"; depends=[evd]; }; @@ -7393,7 +7423,7 @@ in with self; { conformalInference_multi = derive2 { name="conformalInference.multi"; version="1.1.1"; sha256="1xc879ygv9avamy29a6rdfb6pknaz82f3k6392c8a90sgfn3bx3d"; depends=[future future_apply ggplot2 glmnet gridExtra hrbrthemes]; }; conformalbayes = derive2 { name="conformalbayes"; version="0.1.2"; sha256="0pl1ajix5v3zckny5angk1rqnalln4agf65yrdva210zl6wp7fzm"; depends=[cli loo matrixStats rstantools]; }; confoundr = derive2 { name="confoundr"; version="1.2"; sha256="000vf828qv04pplx8yc8q3mafxf4g0axip6z5zbsj2581yxv9jjh"; depends=[dplyr ggplot2 gridExtra magrittr purrr rlang Rmpfr scales stringr tidyr]; }; - confreq = derive2 { name="confreq"; version="1.6.0-3"; sha256="0lijjj355y5ihf3djh9swfk0x0xa4307y6a1i864xp2jh2v79hs9"; depends=[gmp vcd]; }; + confreq = derive2 { name="confreq"; version="1.6.1-1"; sha256="05bwsj4xa3k7gngnf3ni8j0qw7yd7iycqkarpxm60dy8ayy68bs8"; depends=[gmp vcd]; }; congress = derive2 { name="congress"; version="0.0.1"; sha256="0fkdffapylsqd1xwxrq6jxcas2amaz9xhap6lbyy6grw0ww7phr7"; depends=[cli dplyr glue httr2 purrr rlang stringr tibble tidyr]; }; conicfit = derive2 { name="conicfit"; version="1.0.4"; sha256="1d704xgiyqmbwfxnsmhqg885x10q8yqxmrk4khqpg3lh696bw97d"; depends=[geigen pracma]; }; conjoint = derive2 { name="conjoint"; version="1.41"; sha256="1iq3226a6fn1gddmh2nxlzvjcvbj7502r9520g9d4xdmk8smfx33"; depends=[AlgDesign broom cluster fpc ggfortify ggplot2]; }; @@ -7413,14 +7443,14 @@ in with self; { consortr = derive2 { name="consortr"; version="0.9.1"; sha256="1c71wvr7sckrv4k65l71l160z6d9amzyydbi6mf2b79zh9zv8g1g"; depends=[data_table DiagrammeR dplyr magrittr purrr rlang shiny shinydashboard tibble]; }; constants = derive2 { name="constants"; version="1.0.1"; sha256="11nliijwphqphik95b3xpawpjg7w4s089wdhjci5bw4va4bgd1xm"; depends=[]; }; constellation = derive2 { name="constellation"; version="0.2.0"; sha256="1d49rnyf2z3bvx158nsmgmb0x7xcgxl9f8y98pwg5wlqck7af99q"; depends=[data_table]; }; - contFracR = derive2 { name="contFracR"; version="1.0"; sha256="115gx38lqf2059fr76xyms2kzjqkg6g7inmfdh7a0c9qn4xjhk3q"; depends=[gmp go2bigq Rmpfr]; }; + contFracR = derive2 { name="contFracR"; version="1.2"; sha256="1pb1xbmgdpg1svxvhq3jx5dmxszivwzmhd18hmg4rlhym454sh1b"; depends=[gmp go2bigq Rmpfr]; }; contTimeCausal = derive2 { name="contTimeCausal"; version="1.1"; sha256="0r2mg0b65xk020v0im2nzfq9644nx0ns2vddiybwz3x5c7z1bpvg"; depends=[dplyr survival zoo]; }; - contact = derive2 { name="contact"; version="1.2.8"; sha256="1db3vgjlz0ivw3sx37mwy7ngjx0in3rxlm3i3akh4xzbfp9gjj87"; depends=[ape data_table doParallel foreach igraph lubridate raster rgdal rgeos sp]; }; contactdata = derive2 { name="contactdata"; version="0.2.0"; sha256="1hcibqkfisv28d38ymgvmkkbs4jl3lbp2safyd5abf185043263d"; depends=[]; }; - contentid = derive2 { name="contentid"; version="0.0.15"; sha256="0r5lrq82vfv698g8md8kdhl83gi8rx5hrhk2qddykxlxk4krzagi"; depends=[curl fs httr openssl]; }; + container = derive2 { name="container"; version="1.0.4"; sha256="0vpha9s5d8mxqdzmbfy92qz78b6gfibwgp1ijq70c5vqs2clkzb1"; depends=[data_table R6]; }; + contentid = derive2 { name="contentid"; version="0.0.16"; sha256="17zb7fpnr1a2ixanxmgk9awwmb3njw1lk97s3a0w6cvd7dwz8iz2"; depends=[curl fs httr openssl]; }; contfrac = derive2 { name="contfrac"; version="1.1-12"; sha256="0sq5c7ny235yrkv2xc4insgxby6rvzc1qsj8h301cd2if3lwbgwm"; depends=[]; }; - contingency = derive2 { name="contingency"; version="0.0.6"; sha256="0bwvrwsa41s24j612w4jyhlfp2r6qa37ljsb3lxx27mkd9r0286d"; depends=[rje]; }; - contingencytables = derive2 { name="contingencytables"; version="1.0.2"; sha256="09biny56xvp9bmhm53vcw6985hk2b4bbzyj8y25wzg3idznxihlf"; depends=[boot MASS]; }; + contingency = derive2 { name="contingency"; version="0.0.10"; sha256="155pzw1ifm1c4pjd5wxj9lb89a6wc9l5g1v2rhq8rfswzds89gjv"; depends=[rje]; }; + contingencytables = derive2 { name="contingencytables"; version="1.0.4"; sha256="18j7iaficb0lhl6g83cgr346a1wq19s20nmiclrxryyk88pswzak"; depends=[boot MASS]; }; contourPlot = derive2 { name="contourPlot"; version="0.2.0"; sha256="0bjwq3p57d6hadln8vwjkh7c9sbb466h3zcq9kpx7kd31z6x8gnz"; depends=[interp RColorBrewer]; }; contoureR = derive2 { name="contoureR"; version="1.0.5"; sha256="1izq1alkf24zd2sf2ir2adyrkwhdj7n89cv6z0dfh5mfqld5bkdn"; depends=[geometry plyr Rcpp reshape]; }; contrast = derive2 { name="contrast"; version="0.24.2"; sha256="1k7gdjmzgsw3rm90k9gpzlg4b8ma7vxamdj106b6r40q1ypaqha5"; depends=[nlme rms sandwich]; }; @@ -7438,6 +7468,7 @@ in with self; { convey = derive2 { name="convey"; version="0.2.5"; sha256="0vji97sip7p2xpbd3mhx2a6aw46zjky561rypa3hb8xpag16fna5"; depends=[survey]; }; convoSPAT = derive2 { name="convoSPAT"; version="1.2.7"; sha256="1pmiirigjdkrb3pzqcw6qlh6418z384mvaxqw5mrcm1gxzrqp649"; depends=[ellipse fields MASS plotrix StatMatch]; }; cooccur = derive2 { name="cooccur"; version="1.3"; sha256="1wlaghhi4f3v8kzwhcgq3c6as7v3zlpkzhb232qz1amr7f0058kv"; depends=[ggplot2 gmp reshape2]; }; + cookies = derive2 { name="cookies"; version="0.2.0"; sha256="14rz7wfv3pfgj7j6i11kawavz161k7kdpz0lzjyy756mbrd5cpky"; depends=[cli clock glue htmltools httpuv jsonlite purrr rlang shiny vctrs]; }; cooltools = derive2 { name="cooltools"; version="2.0"; sha256="1ak4kkmi0m38rmwk3d4r5y9224awhx65gbb2i2nhw4cfhnzdyg0k"; depends=[bit64 celestial cubature data_table jpeg MASS plotrix png pracma raster Rcpp sp]; }; coop = derive2 { name="coop"; version="0.6-3"; sha256="0ww99ssgawsgn6rqy838wbx6iirzdrzyxirvz084ih8j50blx420"; depends=[]; }; coopProductGame = derive2 { name="coopProductGame"; version="2.0"; sha256="1348pgqfvvysdixsjibgkvwjsmqasnlmwf9kyr39lw8jb81z25h0"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; }; @@ -7448,15 +7479,15 @@ in with self; { coppeCosenzaR = derive2 { name="coppeCosenzaR"; version="0.1.3"; sha256="1chwsfyaf5rmlsypr43n7px8b2220dfa5mzcriq1swylgbx4181l"; depends=[]; }; copre = derive2 { name="copre"; version="0.1.0"; sha256="1mvh2fyxsc8v2cwlppsnx29dn5s1vg5pg22cd5acidsnk5lvbr86"; depends=[abind BH dirichletprocess ggplot2 pracma Rcpp RcppArmadillo]; }; cops = derive2 { name="cops"; version="1.2-0"; sha256="0bw13yhvnq5qw9rgmvf7w3kmygbpx58168rm546x8v155ywccvfx"; depends=[cmaes cordillera crs dfoptim GenSA MASS minqa NlcOptim nloptr pso rgenoud Rsolnp scatterplot3d smacof subplex]; }; - copula = derive2 { name="copula"; version="1.1-0"; sha256="096rfnm14lp2pldqdphhf1v8bqv7ihxi901qinhv4kakari6xdws"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; + copula = derive2 { name="copula"; version="1.1-1"; sha256="1qz1hpqn7nsajsfvnyn4l1zqzkvmv1174dbb7cjps0q9dsvalx2l"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; copulaData = derive2 { name="copulaData"; version="0.0-1"; sha256="1s917g8wasxndg1xq4b4fjaq29nyzzigpflgqcy4rxdb7r54dl0z"; depends=[]; }; copulaSim = derive2 { name="copulaSim"; version="0.0.1"; sha256="12mnh0gpxz046kywki9jr6gj574kfwcs1gczzr7zfkvkm5qgga65"; depends=[dplyr magrittr mvtnorm rlang tibble]; }; copulaboost = derive2 { name="copulaboost"; version="0.1.0"; sha256="12mx048mxglaxdkskp9b31rkmhsyfay8m62134nh9k04iqb8zjap"; depends=[rvinecopulib]; }; copulaedas = derive2 { name="copulaedas"; version="1.4.3"; sha256="01wp8jnz7kndknj7lh9ia7mm41k1vbaksalyy9v19bb77yhgzmba"; depends=[copula mvtnorm truncnorm vines]; }; copulareg = derive2 { name="copulareg"; version="0.1.0"; sha256="0wn40rvh2dg60h45qbzy7nwcy2rhrnxf1rykl1ycs75mrimaayn9"; depends=[rvinecopulib]; }; - copyseparator = derive2 { name="copyseparator"; version="1.1.0"; sha256="0v0z5fnbvhvpbx9gr6wnq22ijjyvlnnh7q4nbvffh7wdsnwijmi8"; depends=[ape beepr Biostrings DECIPHER kmer seqinr stringr]; }; + copyseparator = derive2 { name="copyseparator"; version="1.2.0"; sha256="0dywnrqjb6x7v8icx117vsjb6zzb0brmmz1xwdc8a26lgcqmbvgv"; depends=[ape beepr Biostrings DECIPHER doParallel foreach kmer seqinr stringr]; }; corHMM = derive2 { name="corHMM"; version="2.8"; sha256="1pxn5vx5pxrys5ql393bibfij1922pbm2v5vr0h5gcdjym0ndr6n"; depends=[ape corpcor expm GenSA igraph MASS nloptr nnet numDeriv phangorn phytools Rmpfr viridis]; }; - corTESTsrd = derive2 { name="corTESTsrd"; version="0.9-2"; sha256="18mrcdqw853v2x57kg4zfpygnsxvcpc2sh61lrg3higdkb8svcpd"; depends=[]; }; + corTESTsrd = derive2 { name="corTESTsrd"; version="1.0-0"; sha256="0as1xnc38jm1hay2dqib6y8mas9ip1qz55d1bcnpkaxdfaydzpcw"; depends=[]; }; corTest = derive2 { name="corTest"; version="1.0.7"; sha256="1gip8rxvbhrckwmjwmxbmycndg4jrl75x8qda9l35znfv9r7p0nq"; depends=[Biobase clusterGeneration ggplot2 igraph MASS Matrix]; }; cora = derive2 { name="cora"; version="0.1.0"; sha256="0mx7dn05js8hqr3xgrbp2kv25y6qjlm86y6asy17hwbbvbsmama9"; depends=[]; }; corazon = derive2 { name="corazon"; version="0.1.0"; sha256="1advzmbmnpq18ym2k8rcxhsdzfscl68jss8wbqcir68951x2aqi3"; depends=[htmltools]; }; @@ -7470,7 +7501,7 @@ in with self; { corels = derive2 { name="corels"; version="0.0.4"; sha256="1ygbvhnz304y4y708ygr4x6kbwv7bfpjd5hhcrcc6lma59h7arfn"; depends=[Rcpp]; }; corkscrew = derive2 { name="corkscrew"; version="1.1"; sha256="1nb81r4lsrajcj3xz3f7p6xznnb38yg3rnnh44rd3kabca4d8r1s"; depends=[ggplot2 gplots igraph RColorBrewer]; }; corlink = derive2 { name="corlink"; version="1.0.0"; sha256="06n9pcvbn8y9gy0mn9c0sw05424ss8smpaw3ly6a785cmj3d9b6m"; depends=[]; }; - corncob = derive2 { name="corncob"; version="0.3.0"; sha256="1ahlhc3vjqiw87xk03ws4ii295gimjwxzs6lk9nz94qyc4hq200h"; depends=[detectseparation dplyr ggplot2 magrittr numDeriv optimr phyloseq scales trust VGAM]; }; + corncob = derive2 { name="corncob"; version="0.3.1"; sha256="0y1iw8kdd8smw2j590s4ndnzihh3g9hlq49dcw38zcf7jqydjw28"; depends=[detectseparation dplyr ggplot2 magrittr numDeriv optimr phyloseq scales trust VGAM]; }; cornet = derive2 { name="cornet"; version="0.0.6"; sha256="1psvsc0w5nr7fd83w6wk0q6y8cz2kjjv6slkihghavp6azrhx45k"; depends=[glmnet palasso]; }; coro = derive2 { name="coro"; version="1.0.3"; sha256="0wvxdpdh3xrskz5s5wfkva856x849knx1jigbf0ff6s6n6qjjxsf"; depends=[rlang]; }; coroICA = derive2 { name="coroICA"; version="1.0.2"; sha256="0pcz2256liczrn2gik8b5331rgzlxjrm7rzn1ialhifkiinifnva"; depends=[MASS]; }; @@ -7508,7 +7539,7 @@ in with self; { cosmoFns = derive2 { name="cosmoFns"; version="1.1-1"; sha256="0py0wmdpxk8ldq1wbwg4x1hxkjblar83x3ya30n4377d4lbc3xb7"; depends=[]; }; costat = derive2 { name="costat"; version="2.4"; sha256="0c47bklqjgjmdglw3mi9lvygwjr5w6i1zv91ll3vpnl5dnay0692"; depends=[wavethresh]; }; costsensitive = derive2 { name="costsensitive"; version="0.1.2.10"; sha256="192q55123yzcjjh4047ppxa3h7gk9afqnvm1nlhzs4ccqz71g411"; depends=[]; }; - cotram = derive2 { name="cotram"; version="0.4-1"; sha256="1myfyx1bp50jywccns65hkxd2vs2zr0jmwj4i6h986n2zs6vdy60"; depends=[alabama basefun Matrix mlt survival tram variables]; }; + cotram = derive2 { name="cotram"; version="0.4-2"; sha256="0qgbckdjp53xd40b83xbnadgn375lmm69hvilmc4ka9h5drj2igb"; depends=[alabama basefun Matrix mlt survival tram variables]; }; cotrend = derive2 { name="cotrend"; version="1.0.2"; sha256="17h67vnpnlv11bf3ka5mlnah9bizxjhvicsvbygy91dqbhjhj9wb"; depends=[xts]; }; couchDB = derive2 { name="couchDB"; version="1.4.1"; sha256="1n99amvnsjp88y091603hjsvp243c5i6dbrsvdjfmzgj5dsrv70m"; depends=[bitops httr RCurl rjson]; }; countHMM = derive2 { name="countHMM"; version="0.1.0"; sha256="12z0nz7in2msb5wa5yyjxx19ih8psw06m7xwlapvjksslippp6gs"; depends=[]; }; @@ -7572,9 +7603,9 @@ in with self; { cplm = derive2 { name="cplm"; version="0.7-10"; sha256="0mqjk10265hq9bc5ihmgbx1l8fzay1gpdlvx3pirqmvr3w1kwlxk"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; cplots = derive2 { name="cplots"; version="0.5-0"; sha256="12nac8hywhsfh2fcv30w36la46hvvp5mwc2rrq34smraig0dq8f3"; depends=[circular]; }; cpm = derive2 { name="cpm"; version="2.3"; sha256="07zbvc5jkwv76lkzby6r073fxjsqgnrdl2w9lcph577knnip89jx"; depends=[]; }; - cpop = derive2 { name="cpop"; version="1.0.3"; sha256="1vyjfxd9j5k1ya4bzi3gsdy34pvgi0y1a8h4qgr24bc661s48c66"; depends=[crops ggplot2 mathjaxr pacman pracma Rcpp Rdpack]; }; + cpop = derive2 { name="cpop"; version="1.0.6"; sha256="0f7rxyh8m6w45cja02mip91p72bjlygrc0rdggbls50l63w1qczj"; depends=[crops ggplot2 mathjaxr pacman pracma Rcpp Rdpack]; }; cpp11 = derive2 { name="cpp11"; version="0.4.3"; sha256="1wcq4lq7xa62xn6zsg6r8nf6vdlvnlwxgfqndb7vnvd8f54hx9pi"; depends=[]; }; - cppRouting = derive2 { name="cppRouting"; version="2.0"; sha256="0yfiyg1clnl85lk5ah8dcchv71drk6r093vpl82xnczyan5z94sr"; depends=[data_table Rcpp RcppParallel RcppProgress]; }; + cppRouting = derive2 { name="cppRouting"; version="3.1"; sha256="1mhp6k2kwlhyrswlxi9f0f6ndvm5968ljp3k97c2m2sfbxaablxy"; depends=[data_table Rcpp RcppParallel RcppProgress]; }; cppcheckR = derive2 { name="cppcheckR"; version="1.0.0"; sha256="1f3b8gadpiyxwxp34pd3i7s715dkm23427fp86vvnqvy9schg3ga"; depends=[htmlwidgets rmarkdown rstudioapi shiny V8 xml2]; }; cpr = derive2 { name="cpr"; version="0.2.3"; sha256="1a2lza1bw74xzrs17a9gr9mnpvnnrykhwd73yqi63wp3k4sm42rb"; depends=[dplyr ggplot2 lazyeval lme4 magrittr plot3D Rcpp RcppArmadillo rgl tibble tidyr]; }; cprobit = derive2 { name="cprobit"; version="1.0.2"; sha256="16fnndpkd226paahmadsddakj4yhybw7lp3csr73fwv78zfl2fj9"; depends=[car ggplot2 gridExtra nortest]; }; @@ -7606,13 +7637,12 @@ in with self; { credule = derive2 { name="credule"; version="0.1.4"; sha256="0kwjjkavch21grx845kdcansaj0g407v7z3wmhy4whra9ic12y76"; depends=[]; }; cregg = derive2 { name="cregg"; version="0.4.0"; sha256="1a34jhdk4r9ywsrc5dc8wq5am3059cli60f6n2n8j04ls13fvlkd"; depends=[ggplot2 ggstance lmtest sandwich scales survey]; }; crestr = derive2 { name="crestr"; version="1.2.0"; sha256="1dr2xzr72cm0i7ldgx0kf96r0q1qa18fq6zivck1qd1gwy22iiq9"; depends=[clipr DBI openxlsx plot3D plyr raster rgdal rgeos RPostgres RSQLite scales sp stringr viridis]; }; - crfsuite = derive2 { name="crfsuite"; version="0.4"; sha256="0arxbszaf1y8cqgzbq9a5l58n3c3rhjfp78lnhdxg95cdmdzhcfd"; depends=[data_table Rcpp]; }; + crfsuite = derive2 { name="crfsuite"; version="0.4.1"; sha256="0vm4gpyb9qxlj0xixnmjs8hv3xi3ydzd8dbymk7f78nafdvqwkxy"; depends=[data_table Rcpp]; }; cricketdata = derive2 { name="cricketdata"; version="0.2.1"; sha256="1w9bikx06brq5d02nmqljdx8yhxf8gqlkwr1xkg10zjiclv6kn0r"; depends=[dplyr janitor lubridate magrittr progress readr rvest stringr tibble tidyr xml2]; }; cricketr = derive2 { name="cricketr"; version="0.0.26"; sha256="1y1zf9f59v95knggq5nna5rp7fqpv1swwvkajwqbpicc12g2azq4"; depends=[dplyr forecast ggplot2 httr lubridate plotrix scatterplot3d XML]; }; crimCV = derive2 { name="crimCV"; version="0.9.6"; sha256="14ckk88i7jk8a7kl51d7qfdis44jng6zz9zd72cdp80a57dvrvzq"; depends=[]; }; crimedata = derive2 { name="crimedata"; version="0.3.1"; sha256="16xccfh64qza617d7k9swahchij57skh8wwnj7gxlpasknx11wwf"; depends=[digest dplyr httr purrr rlang sf stringr]; }; - crimelinkage = derive2 { name="crimelinkage"; version="0.0.4"; sha256="1zzk50kyccvnp51vzp28c9yi23hsp25arrgdn88lwfwa0m43rlar"; depends=[geosphere igraph]; }; - crimeutils = derive2 { name="crimeutils"; version="0.3.0"; sha256="1g7na36k1na7bsq8xqi01ja2fpb09r2davpi56jn5k1lih93kp8k"; depends=[dplyr ggplot2 gridExtra gt magrittr readr rlang scales tidyr]; }; + crimeutils = derive2 { name="crimeutils"; version="0.5.1"; sha256="0jsh2b1kv8r9x8sx1s2x6dpc8jyfnjsinycqb5wck5jcsswswgd6"; depends=[dplyr ggplot2 gridExtra gt magrittr readr rlang scales stringr tidyr]; }; crisp = derive2 { name="crisp"; version="1.0.0"; sha256="1gs8jnd9y9pd55w6kwv9mvmg3wd8hjiw3lwx7k242pxccsxklfxq"; depends=[MASS Matrix]; }; crispRdesignR = derive2 { name="crispRdesignR"; version="1.1.6"; sha256="1h9153iv55qkx9hyf3gs118m99mkzj5mbj6i3jg58chfp0m6jx78"; depends=[BiocGenerics Biostrings DT gbm GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors shiny stringr vtreat]; }; criticality = derive2 { name="criticality"; version="0.9.2"; sha256="0177dx8y93gg37244615y17lidk7hmji5k1dlrm3670flfnigf28"; depends=[bnlearn caret dplyr evd fitdistrplus ggplot2 keras magrittr reticulate scales]; }; @@ -7627,9 +7657,9 @@ in with self; { crone = derive2 { name="crone"; version="0.1.1"; sha256="03qznxml940rl3kfxy4jkg9nsx9ss0gf2ck0ry000xglw6rm2s42"; depends=[]; }; cronologia = derive2 { name="cronologia"; version="0.2.0"; sha256="143wc9i9d99cybnjzg4dj7jn7sv3cc4bq3hh6mp50j9hwxnr1xhh"; depends=[glue htmltools]; }; crop = derive2 { name="crop"; version="0.0-2"; sha256="1yjpk7584wrz9hjqs21irjnrlnahjg8lajra9yfdp6r927iimg1l"; depends=[]; }; - cropDemand = derive2 { name="cropDemand"; version="1.0.1"; sha256="0h4blvddk2ma3dm1k9r8gl54fg384r214hsx31w1qndwcj7gfpbh"; depends=[dplyr ggplot2 ncdf4 raster rgdal tidyr]; }; - cropZoning = derive2 { name="cropZoning"; version="1.0.1"; sha256="19082p5c322m684fkjcxa1bcmk3vzga2x75lid9zrsrh6knrqsbz"; depends=[ggplot2 ncdf4 raster rgdal tidyr]; }; - cropcircles = derive2 { name="cropcircles"; version="0.1.0"; sha256="1y4bnavz8bkp9b3yxnqzfai4hsn8cag4walkwa0vi5892gma5az5"; depends=[glue magick purrr]; }; + cropDemand = derive2 { name="cropDemand"; version="1.0.2"; sha256="0fffrwwk91gzhb2gn8m0nlnv3gmhdv2srzjblysgkh4bnqmrjvq2"; depends=[dplyr ggplot2 ncdf4 raster rgdal tidyr]; }; + cropZoning = derive2 { name="cropZoning"; version="1.0.2"; sha256="134spdw7qfp0f7xsjyz35xfmabqdbx37z8isf5mfg6q8rqnjhc9y"; depends=[ggplot2 ncdf4 raster rgdal tidyr]; }; + cropcircles = derive2 { name="cropcircles"; version="0.1.1"; sha256="1as2znv307mzsnq4rh9zfi3g7jff77dgsbn3hp47qm97jznvhgkg"; depends=[glue magick purrr]; }; cropdatape = derive2 { name="cropdatape"; version="1.0.0"; sha256="19bn0apx4p8hnz388zg7sq59qv89vv8k5php317kcv7ai2k2gh34"; depends=[]; }; cropgrowdays = derive2 { name="cropgrowdays"; version="0.1.1"; sha256="0jgdfhywnlsz2mxb4skkrxf9fb55qyidd6y6nhb9324jm8d3xl0a"; depends=[dplyr httr lubridate magrittr purrr purrrlyr tibble]; }; crops = derive2 { name="crops"; version="1.0.3"; sha256="0c1xvfnr4dh720x0i3f6nvmzgv8zbs7cvp8vfa341yb92pz4d6s0"; depends=[cowplot ggplot2 magrittr memoise Rdpack reshape sets tibble tidyverse]; }; @@ -7639,7 +7669,7 @@ in with self; { crossrun = derive2 { name="crossrun"; version="0.1.1"; sha256="1v2khjb77g63ls6s15z9hy81z4hyf89g58jxjl94jrkznq1c4fa4"; depends=[Rmpfr]; }; crosstable = derive2 { name="crosstable"; version="0.5.0"; sha256="0gaxg4y9fpx9h1yhay449mnwpl2lpfa1cvkg9d83ddgdg7n8hkss"; depends=[checkmate cli dplyr flextable forcats glue lifecycle officer purrr rlang stringr tibble tidyr tidyselect]; }; crosstalk = derive2 { name="crosstalk"; version="1.2.0"; sha256="180y7mhpj17axpadwhh7s0qvrpdnag7g977vk256l96d6nmvlds2"; depends=[htmltools jsonlite lazyeval R6]; }; - crosstalkr = derive2 { name="crosstalkr"; version="0.8.0"; sha256="07wimbwm521l88xcidn78gxl4hwfksd5xxvkydzy372ybqqi5aqk"; depends=[doParallel dplyr EnsDb_Hsapiens_v79 ensembldb foreach ggplot2 igraph magrittr Matrix readr rlang STRINGdb stringr tibble tidyr withr]; }; + crosstalkr = derive2 { name="crosstalkr"; version="0.9.0"; sha256="0zydsyi0banjwkk4q1b231f1smww3xwmxfm5ibj2az41ppj39m2j"; depends=[doParallel dplyr EnsDb_Hsapiens_v79 ensembldb foreach ggplot2 igraph magrittr Matrix readr rlang STRINGdb stringr tibble tidyr withr]; }; crossurr = derive2 { name="crossurr"; version="1.0.6"; sha256="16fq6hdfc6nsdijj63fji3bn3hp40m350qjxhf8a3xs5j86vf43j"; depends=[dplyr gbm glmnet glue pbapply purrr ranger RCAL rlang SIS SuperLearner tibble tidyr]; }; crossval = derive2 { name="crossval"; version="1.0.4"; sha256="0vshlyc6w4kfs03n56ylapiqgdyday7068wmfsphj4lhw322s4yp"; depends=[]; }; crossvalidationCP = derive2 { name="crossvalidationCP"; version="1.0-2"; sha256="0gwlpfqk3jsamkdx0sjvn4wmmcrdicgparks298hvi4gjlibp7mc"; depends=[changepoint FDRSeg stepR wbs]; }; @@ -7659,7 +7689,7 @@ in with self; { crsuggest = derive2 { name="crsuggest"; version="0.4"; sha256="044llamxlrva5va39yzpvsmdjqn56ij7jjll73mmjg7ka0rqc5dj"; depends=[dplyr mapview purrr sf units]; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; crul = derive2 { name="crul"; version="1.3"; sha256="0b8y12wb5kjylr8b4a2iarb5rpw1ydinw3lxp2ssq91pidyn2n40"; depends=[curl httpcode jsonlite mime R6 urltools]; }; - crunch = derive2 { name="crunch"; version="1.30.0"; sha256="0ysk4hpymkby80j8snyziqigsr4nda8zm3b8frxmvk42psy7m7hh"; depends=[abind crayon curl httpcache httr jsonlite]; }; + crunch = derive2 { name="crunch"; version="1.30.1"; sha256="1qq9qddabq3x5kznxi6c9bm6jnr43559rmfdsp4xwqhgqpffrcfy"; depends=[abind crayon curl httpcache httr jsonlite]; }; crunchy = derive2 { name="crunchy"; version="0.3.3"; sha256="15w72kmizsxkj1wx3nqny6329m2041mxyzi4nxh8l3hfmaisb4qm"; depends=[crunch httpcache miniUI rstudioapi shiny]; }; cruts = derive2 { name="cruts"; version="1.1"; sha256="1ih6h9qk4yflzars00d61smjqj7s4bfvc2ikp6vlki9f6k012xcx"; depends=[lubridate ncdf4 raster sp stringr]; }; cry = derive2 { name="cry"; version="0.5.1"; sha256="0n1yyjkqj0kqs53g27chl7lhk07f7aj81jwyvaxfmfkp03xzjj0d"; depends=[ggplot2 zoo]; }; @@ -7670,6 +7700,7 @@ in with self; { csa = derive2 { name="csa"; version="0.7.0"; sha256="0cmabcvfxfplnzx7mdsfas3jhgz44y86411amaphm75zmv8khcif"; depends=[data_table doParallel foreach ggplot2 ggpubr Lmoments moments raster reshape2 scales]; }; csampling = derive2 { name="csampling"; version="1.2-2.1"; sha256="0kqx7j96yafsqi9cz551fqpwkbcabxl8zpwa2jms862z41xbgsv3"; depends=[marg statmod survival]; }; csci = derive2 { name="csci"; version="0.9.3"; sha256="00s1gx5h141w1vjw8j3k7bn71c4dy80m6wakd1c1z7rmx1jbfp6m"; depends=[exactci]; }; + csdata = derive2 { name="csdata"; version="2022.11.22"; sha256="0gcjdkhbfg3dwivk0w23rdrjcq5vsa96x8l1fwjr86q4h4dyl8lw"; depends=[data_table]; }; cshapes = derive2 { name="cshapes"; version="2.0"; sha256="0c3q85whvp28zlm4k1570kwc5qvl2fmaszx9dpmfcdqv6m19f9ks"; depends=[rmapshaper sf sp]; }; csn = derive2 { name="csn"; version="1.1.3"; sha256="102w1qh9hgz4j9lh5hnbw1z3b7p034si73q4pkk564a2mhzlksw4"; depends=[mvtnorm]; }; csodata = derive2 { name="csodata"; version="1.3.0"; sha256="11y3gr7b5m0zh3vbl4izy454mrcxj144vfvafxlxgp2aplzim3s8"; depends=[dplyr httr jsonlite lubridate R_cache reshape2 rjstat sf]; }; @@ -7678,36 +7709,37 @@ in with self; { csppData = derive2 { name="csppData"; version="0.2.61"; sha256="1q9a11v512dc96lrrd03w06s8x6c1a0j4z5x8qvq48f4q7k30l1r"; depends=[]; }; cssTools = derive2 { name="cssTools"; version="1.0"; sha256="1p8c21c1hilmd9ibqyz493fy1x95hb2pidybsyicch53gkb542br"; depends=[sna]; }; cstab = derive2 { name="cstab"; version="0.2-2"; sha256="1lr401fvi88f4jv8jh4brx95ymncfw8clripz1r6a46inj80nj4j"; depends=[cluster fastcluster Rcpp]; }; + cstime = derive2 { name="cstime"; version="2022.11.22"; sha256="12nammfv9abf888zkhg3ng59r1v2pmxk9363p97mv8ssbjiil46x"; depends=[data_table dplyr magrittr purrr stringr]; }; csurvey = derive2 { name="csurvey"; version="1.4"; sha256="0d005vyz2q06xp07gssxxjwmi0m4kal839wsghqg5mldvi5qn2g4"; depends=[cgam coneproj dplyr MASS Matrix purrr survey tidyselect]; }; + csutil = derive2 { name="csutil"; version="2022.11.24"; sha256="0wa7isv73f7hn5s58w0wrbfb91i6j01vsy3n5iryj19wjw9a34cq"; depends=[data_table ggplot2 magrittr]; }; csv = derive2 { name="csv"; version="0.6.2"; sha256="1mynaia16jm28qi597xg7kf4w85vsxg5p83xbcbbr9di49vxqlr8"; depends=[data_table stringi]; }; csvread = derive2 { name="csvread"; version="1.2.1"; sha256="1r9jvf7nbkxgl6dycdnb89yh39vacrzy8z04g8qz225rklg5b288"; depends=[]; }; - csvwr = derive2 { name="csvwr"; version="0.1.6"; sha256="1wwj0zx4jawfl5264qxa90qwll971c24hyk645r0c7wwvwa8dd9r"; depends=[jsonlite magrittr purrr readr rlang stringr]; }; + csvwr = derive2 { name="csvwr"; version="0.1.7"; sha256="1yh330kh1q06f2vn8jvgirz4q7wld1ylnkjpnjh17nqq0d2lsmk2"; depends=[cli jsonlite magrittr purrr readr rlang stringr]; }; csvy = derive2 { name="csvy"; version="0.3.0"; sha256="0id015szw1c63vd1h0515jsqdhyn32sxpxm89f3sb1qkgq3yynmy"; depends=[data_table jsonlite yaml]; }; cta = derive2 { name="cta"; version="1.3.0"; sha256="1i8psw6p6f4633ad17apm6v5ikrpv1dagm0s8pggpsjbbw8d655v"; depends=[intervals limSolve numDeriv]; }; - ctbi = derive2 { name="ctbi"; version="1.0.1"; sha256="1p6qv4187qjnz36gs328bm337f72jybyf3x490qn18pxjwkczj4x"; depends=[data_table]; }; + ctbi = derive2 { name="ctbi"; version="2.0.4"; sha256="15dvxrir9rahr50kp1q884l06sjlb4fd9b92k3ib4d75c58bp72q"; depends=[data_table]; }; ctf = derive2 { name="ctf"; version="0.1.0"; sha256="1vwqfh1y2if79rkpy6b0ay50fyis7h5rlpvhgikahnmcr2q5l14m"; depends=[iotools jsonlite]; }; ctgdist = derive2 { name="ctgdist"; version="0.1.0"; sha256="1m3ryppfvd984n5xfphjqhi9i1sigl17v897mqaichj21dzaq62f"; depends=[mirt]; }; ctgt = derive2 { name="ctgt"; version="2.0"; sha256="0g2ibk9pxay0idj55q0yh4vbdb6l6460r997fnapimn7fgyz6f66"; depends=[BH Rcpp]; }; - cthist = derive2 { name="cthist"; version="1.2.1"; sha256="1v377i3d26m6arl04iqqvj2ghc0bhns8nrgvk677gkki34ndbcz5"; depends=[assertthat dplyr httr jsonlite magrittr polite RCurl readr rlang rvest selectr stringr tibble]; }; cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; }; ctl = derive2 { name="ctl"; version="1.0.0-7"; sha256="1a01rha6sgv8zmcfjb1c438s9d9bjzdjf2pmyml1m5jmz93q70ds"; depends=[MASS qtl]; }; ctmcd = derive2 { name="ctmcd"; version="1.4.2"; sha256="1gmm64z4p1vkh2fkbm4ayc67i6rxkxvha8fwg4zaf59bmxi7qnnc"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; ctmcmove = derive2 { name="ctmcmove"; version="1.2.9"; sha256="1pxyxbbhfa8arqfb7qw10ya1b8hy9ylqbqqzys6d9dsixvdk98h0"; depends=[fda gdistance Matrix raster sp]; }; ctmle = derive2 { name="ctmle"; version="0.1.2"; sha256="0qc1ji8fjpr88dn6mrpijfcx1ij4zkrxsbcw405hxal7rli0gyp3"; depends=[glmnet SuperLearner tmle]; }; - ctmm = derive2 { name="ctmm"; version="1.0.0"; sha256="0c8xw8fhgnnagldqid6hnk4ql7dyjw2zqwfysnhgcgvc7hmcbpk9"; depends=[Bessel data_table digest expm fasttime Gmedian gsl manipulate MASS numDeriv pbivnorm pracma raster rgdal shape sp statmod]; }; + ctmm = derive2 { name="ctmm"; version="1.1.0"; sha256="1npx017c4w8689ig36r54fbl40h0hd0crh3n64ypbid2xxb2j0ck"; depends=[Bessel data_table digest expm fasttime Gmedian gsl manipulate MASS numDeriv pbivnorm pracma raster rgdal shape sp statmod]; }; ctmva = derive2 { name="ctmva"; version="1.0"; sha256="0pf113y62kfdc717bmbh82d8x42wd54fk8p6q8i9zh83ylazkpf0"; depends=[fda polynom]; }; ctpm = derive2 { name="ctpm"; version="1.0.1"; sha256="1bycdh3mbimmfvv3yb50c8rwcmkbjj0jwnfiynsp2h56y3dmzc1r"; depends=[ape ClusterR ctmm slouch]; }; ctqr = derive2 { name="ctqr"; version="2.0"; sha256="0srrlgqxpp4a46wqr83zpb3xr49pf70b0n8bv9qp8ffak20d2hpj"; depends=[pch survival]; }; - ctrdata = derive2 { name="ctrdata"; version="1.10.2"; sha256="0gp7c71izpybp0sv7xrm8ndc1sih2bibj2p2404nkfjam559rwp7"; depends=[clipr curl dplyr httr jsonlite lubridate nodbi rvest stringi xml2]; }; + ctrdata = derive2 { name="ctrdata"; version="1.11.1"; sha256="076v3bll8s6m61wcbwgrgrm34g0wa7gsc90mbwxwap1xfxyzjjsg"; depends=[clipr curl dplyr httr jsonlite lubridate nodbi rvest stringi xml2]; }; ctrialsgov = derive2 { name="ctrialsgov"; version="0.2.5"; sha256="0hdh1fdfaja8amf7fkvk1c6yif703132bvacq0j9pk5jr97czgpw"; depends=[DBI dplyr ggplot2 htmlwidgets lubridate Matrix plotly purrr rlang stringi tibble]; }; ctrlGene = derive2 { name="ctrlGene"; version="1.0.1"; sha256="0x7j11v7jj4k1jml6lrnjq79awhrvsm3pig1yxsd337jlfml3ra9"; depends=[psych]; }; - ctsem = derive2 { name="ctsem"; version="3.7.1"; sha256="1m07mha1nfss1ilcx7dna0k1p5jh4659p6rvy1hk8dk87f9kqyd8"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm plyr Rcpp RcppEigen RcppParallel rstan StanHeaders tibble]; }; + ctsem = derive2 { name="ctsem"; version="3.7.2"; sha256="0pr98lqga6lw7lp2l084jcda5b9j0wn3bwxg243p9qbqlf5q495l"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm plyr Rcpp RcppEigen RcppParallel rstan StanHeaders tibble]; }; ctsemOMX = derive2 { name="ctsemOMX"; version="1.0.4"; sha256="1sjsm573alsg3dvj58rwknqapcydx77zbs0b8hcf59qbbhfa3djv"; depends=[ctsem Matrix OpenMx plyr]; }; - ctv = derive2 { name="ctv"; version="0.9-3"; sha256="0rwsiipnxjlj3pq97zh2hnbv1jigys32yl3zdp34x9z2xj3v4kg9"; depends=[]; }; + ctv = derive2 { name="ctv"; version="0.9-4"; sha256="1m9gmfy05zn51qsvck2rg4nshn3rrpgbbsxvap2f3hp7mgc8nizw"; depends=[]; }; cuRe = derive2 { name="cuRe"; version="1.1.0"; sha256="19rz0wxdjsgvsckn4r6kf1x018zdsbxsd2xj82ddhwp6b1gm7iai"; depends=[date numDeriv relsurv reshape2 rstpm2 statmod survival]; }; cubature = derive2 { name="cubature"; version="2.0.4.5"; sha256="08whkhvn218089r930spn97m91vv1njgh2amksia8l3rbf7127x8"; depends=[Rcpp]; }; - cubble = derive2 { name="cubble"; version="0.1.1"; sha256="1dibxxcp92grjk4x0fgkqi37xvmb851gqc5h1za45if8fidd5zsw"; depends=[cli clipr dplyr geosphere ggplot2 glue lubridate ncdf4 pillar rlang sf stringr styler tibble tidyr tidyselect tsibble vctrs whisker]; }; - cubelyr = derive2 { name="cubelyr"; version="1.0.1"; sha256="1g3pvam1fkqh63snibqcfaazvj7lrkfip8w9pjvwdclj0l8382kl"; depends=[dplyr glue pillar purrr rlang tibble tidyselect]; }; + cubble = derive2 { name="cubble"; version="0.2.0"; sha256="1ldlbqbgd4sd8k1srpmjxvn3jad03bknzgfv5m09ki980m9vjq2d"; depends=[cli dplyr geosphere ggplot2 glue lubridate ncdf4 pillar rlang sf stringr tibble tidyr tidyselect tsibble vctrs]; }; + cubelyr = derive2 { name="cubelyr"; version="1.0.2"; sha256="154vwf5pj2jh66wqdh78nc0v722b4rh88hss24g5lc31wlghzc8q"; depends=[dplyr glue pillar purrr rlang tibble tidyselect]; }; cubeview = derive2 { name="cubeview"; version="0.2.0"; sha256="1352hi2j9x9rx4iy3xvsca86nsh39x1vnymd17f5qc8c3plfm8db"; depends=[base64enc htmltools htmlwidgets lattice raster stars viridisLite]; }; cubfits = derive2 { name="cubfits"; version="0.1-4"; sha256="1dg60162s77p82v8vig52yl8ar8h0pijps8kqq35v1hvp5a3ny5q"; depends=[coda foreach]; }; cubicBsplines = derive2 { name="cubicBsplines"; version="1.0.0"; sha256="1dzwadhhrxgral9x4hxyyy1fyn45pmbwv6wiwfxhivkxmd3s2xdr"; depends=[]; }; @@ -7716,6 +7748,7 @@ in with self; { cultevo = derive2 { name="cultevo"; version="1.0.2"; sha256="0rmncp4mrdpf3izhhqn9406i36j3d3d7i8cglip04lkfbypl9jvy"; depends=[combinat Hmisc pspearman stringi]; }; cumSeg = derive2 { name="cumSeg"; version="1.3"; sha256="0n1hp0abnd6zn72fkgkj9k875vivn5kr3q76sjy6q6va7x24j6sg"; depends=[lars]; }; cuml4r = derive2 { name="cuml4r"; version="0.1.0"; sha256="0zwm8laprwhkjn2ji16f08952hri3bk1qvpj8yhwaqiv4cj2q43k"; depends=[magrittr Rcpp rlang zeallot]; }; + cumprinc = derive2 { name="cumprinc"; version="0.1"; sha256="153cjl6x6mm6dix77bv9614nrd7x7qimwkw96mgxwarfpf1172nn"; depends=[]; }; cumstats = derive2 { name="cumstats"; version="1.0"; sha256="119w751z9dg6pjyk389pbl8ab8pirf9sqndi4nxi89ix2bby4xz8"; depends=[]; }; cumulocityr = derive2 { name="cumulocityr"; version="0.1.0"; sha256="0ybvh5args3s1f3nra58bnfwgrlrdpw40by68az84s90v88bbz2q"; depends=[httr jsonlite]; }; cuperdec = derive2 { name="cuperdec"; version="1.1.0"; sha256="1vvkbkb3dp38xzxxdm20n6vr8yifppn1clzzcvb2rhqk9d17cdiw"; depends=[dplyr ggplot2 magrittr readr rlang tidyr]; }; @@ -7726,27 +7759,28 @@ in with self; { cursr = derive2 { name="cursr"; version="0.1.0"; sha256="08051bnxags2arn296mxwc84j55shhsfym9hd062amdvm23nxd18"; depends=[keypress]; }; curstatCI = derive2 { name="curstatCI"; version="0.1.1"; sha256="0igqdv0fzzji10gz3j3ir8qxpy7vdjfl137067rc28qzbrl2sy2c"; depends=[Rcpp]; }; curtailment = derive2 { name="curtailment"; version="0.2.0"; sha256="1pk3vx9lbmvc1sj9n4n9vgbpx3xj71by0pl82ii10g69qwfllmph"; depends=[data_table ggplot2 ggthemes gridExtra pkgcond]; }; - curvHDR = derive2 { name="curvHDR"; version="1.2-1"; sha256="1a6b29kklyphv9iirm8xaxcdfcssk7ah4wm9ll53ls0alnzb15nw"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; + curvHDR = derive2 { name="curvHDR"; version="1.2-1.1"; sha256="0fr1qiq2qkd2nmkz6n9vrc42jdsyaz1h7qf2n5aapnpk7155c869"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; curveDepth = derive2 { name="curveDepth"; version="0.1.0.9"; sha256="10mhy2nyll4d1q71qnlsal0raccz3awd0j0vi5w58di9wlv1c241"; depends=[ddalpha Rcpp RcppArmadillo]; }; curvecomp = derive2 { name="curvecomp"; version="0.1.0"; sha256="0ykgbwnh32w61cjcg1nyqak42hx0jrsrpbra2wh3pgj9clg1qad2"; depends=[multcomp]; }; cusp = derive2 { name="cusp"; version="2.3.6"; sha256="0rpljddawrbq2q04fc426s57wbl3adp6mfkdv8bpjkfcyq2swbdh"; depends=[]; }; + custom_gauss_quad = derive2 { name="custom.gauss.quad"; version="1.0.0"; sha256="1rpg3wrpvmn24a8kmm3mwyqmrcx2pxhhrf40wp31nv8jfy7cfm7c"; depends=[Rmpfr]; }; customizedTraining = derive2 { name="customizedTraining"; version="1.2"; sha256="0kjp22bzv7a3xynhm9xmabfcms21586p8caz1nk1w88qdvidqfqd"; depends=[FNN glmnet]; }; cusum = derive2 { name="cusum"; version="0.4.1"; sha256="0vjq3slkjdgls41xm637xkrg8jhv6y75xiyfcgpwrp32ixmakpcd"; depends=[checkmate data_table Rcpp]; }; cusumcharter = derive2 { name="cusumcharter"; version="0.1.0"; sha256="0ljprnn48nfl8n0zmvc547rcg4cwrfhq3zjkkimgdnf7z2d130q6"; depends=[data_table ggplot2 rlang]; }; cutoff = derive2 { name="cutoff"; version="1.3"; sha256="0anrvmlvcxah620il3fkq6ldp7hx4nwdnzcpmfc5mhlsry0lp178"; depends=[do ROCit set survival]; }; cutpointr = derive2 { name="cutpointr"; version="1.1.2"; sha256="1qxnh20hs3bh9v04ls7gwwl7lfc6bwl8c88dn8lkcdqyp3nyr01j"; depends=[dplyr foreach ggplot2 gridExtra purrr Rcpp rlang tibble tidyr tidyselect]; }; cvAUC = derive2 { name="cvAUC"; version="1.1.4"; sha256="1m2y50a1yapf1c74km9a4r47ds2z2bfp4wwwkqin7swv9v1s7d28"; depends=[data_table ROCR]; }; - cvCovEst = derive2 { name="cvCovEst"; version="1.1.1"; sha256="1imz2aync46s4ji7i5pnnv8shy247pazxa79m120k3pgq7p5bnly"; depends=[assertthat coop dplyr ggplot2 ggpubr Matrix matrixStats origami purrr RColorBrewer Rdpack rlang RMTstat RSpectra stringr tibble]; }; + cvCovEst = derive2 { name="cvCovEst"; version="1.2.0"; sha256="1787dw3vg1w6mv621qhcdcfmfcxwrjwrwc3hwxqqkhgimnwrn0hy"; depends=[assertthat coop dplyr ggplot2 ggpubr Matrix matrixStats origami purrr RColorBrewer Rdpack rlang RMTstat RSpectra stringr tibble]; }; cvGEE = derive2 { name="cvGEE"; version="0.3-0"; sha256="085qjm520l2441nakfxy851s6bfy5832b5fy54z5fp4xr1jn6snm"; depends=[]; }; cvTools = derive2 { name="cvTools"; version="0.3.2"; sha256="0b7xb6dmhqbvz32zyfbdvm9zjyc59snic6wp1r21ina48hchn3sj"; depends=[lattice robustbase]; }; cvam = derive2 { name="cvam"; version="0.9.2"; sha256="0ylfs2ry1ppigvs7py71vbslxga1d3kaijzwr8v923f3j14zkm54"; depends=[coda Formula]; }; cvap = derive2 { name="cvap"; version="0.1.1"; sha256="1vrbbn0bfyl5spnbz7vq60vgvh787vwsk6awc510x7vrqzn4yyza"; depends=[censable cli dplyr fs magrittr purrr readr rlang stringr tidyr]; }; - cvar = derive2 { name="cvar"; version="0.4.1"; sha256="14mivxlgsx1fz3602pzhd9b5p5aa9hhdif6dhg9q82kd4kz58bdy"; depends=[fGarch gbutils Rdpack]; }; + cvar = derive2 { name="cvar"; version="0.5"; sha256="066vn8flw9j0idmpi9wzvybgihdhwg3fjslx2isbrb11ldl1lwky"; depends=[gbutils Rdpack]; }; cvcrand = derive2 { name="cvcrand"; version="0.1.0"; sha256="0zdf41sjqyi7mybxhypfx1vpc15w7qj9jg9bav64qbk0q5nk7jyc"; depends=[tableone]; }; cvequality = derive2 { name="cvequality"; version="0.2.0"; sha256="1im839vzfqylphp2vr20avnzkyl02n88fngbs63d4ik7c72d9992"; depends=[]; }; cvmdisc = derive2 { name="cvmdisc"; version="0.1.0"; sha256="19b9kxqgbk1d631l3jph87pzhk4zf3xd5q5j2xsrbqz8zmm96sn9"; depends=[CompQuadForm]; }; cvmgof = derive2 { name="cvmgof"; version="1.0.3"; sha256="0s78w8ivxzscn6jbwsw0m15n3xwgbbjdqwpp4dsy3gi0nsmngjyc"; depends=[lattice]; }; - cvms = derive2 { name="cvms"; version="1.3.6"; sha256="1smz0xcbg0a69wlzlva4vicw97qylyla359zjw8q0kwa1hna0c8y"; depends=[checkmate data_table dplyr ggplot2 lifecycle lme4 MuMIn parameters plyr pROC purrr rearrr recipes rlang stringr tibble tidyr]; }; + cvms = derive2 { name="cvms"; version="1.3.7"; sha256="1n46bg760ad0r4fy27fp9rljwn2q6yyj3jn71hnww6ph0jp5f76s"; depends=[checkmate data_table dplyr ggplot2 groupdata2 lifecycle lme4 MuMIn parameters plyr pROC purrr rearrr recipes rlang stringr tibble tidyr]; }; cvsem = derive2 { name="cvsem"; version="1.0.0"; sha256="148v8axwxfr328l709b6q1fmqnzmiw9g7589zgwha4d6lrx4ak4i"; depends=[lavaan Rdpack]; }; cvwrapr = derive2 { name="cvwrapr"; version="1.0"; sha256="17h017p76y7sjcwik48ravygmyivj6kvkhqy5s9ch0nwzzcrzvj3"; depends=[foreach survival]; }; cwbtools = derive2 { name="cwbtools"; version="0.3.8"; sha256="1v7pan3d00km7yq03ym3xdvlqhwrlxg5w8y2dl34dlsm67xysxh1"; depends=[cli curl data_table fs httr jsonlite lifecycle pbapply R6 RcppCWB rstudioapi stringi xml2 zen4R]; }; @@ -7774,7 +7808,7 @@ in with self; { d3plus = derive2 { name="d3plus"; version="0.1.0"; sha256="0kadz83pals03n0v3zqhmhf6visigk52yn58xckhb57fid4xzj5w"; depends=[htmlwidgets magrittr]; }; d3po = derive2 { name="d3po"; version="0.3.2"; sha256="0qhdk2ap9bkf4xfbpyh1k6s2kb6lgr2vgn5ns228vrckghwxhkri"; depends=[assertthat dplyr htmlwidgets magrittr purrr rlang]; }; d3r = derive2 { name="d3r"; version="1.0.0"; sha256="1qijkllfaaw0lb29j8mappm8jz9kg8gkihxq5wqhb4gabsazdwva"; depends=[dplyr htmltools rlang tidyr]; }; - d4storagehub4R = derive2 { name="d4storagehub4R"; version="0.4-1"; sha256="0z8y61b0sl8y7hbpvpp8aiyvq574m4pdipmshnbg114swyx52d0k"; depends=[httr jsonlite keyring R6 XML xml2]; }; + d4storagehub4R = derive2 { name="d4storagehub4R"; version="0.4-2"; sha256="0fkg14zjnlgz988pb76ihi5ajilnqji7mwnc4a3qsfjkx1acib96"; depends=[httr jsonlite keyring R6 XML xml2]; }; dBlockmodeling = derive2 { name="dBlockmodeling"; version="0.2.0"; sha256="0c1hvawb9gw6vckims3g8kzn2c4f0as5x1vw39sdvkwc92xy26lv"; depends=[]; }; dCUR = derive2 { name="dCUR"; version="1.0.0"; sha256="12i2qcjq9i1ycs6z6g3yr1imv7v4g19kdhf1vg9xkvh43pagb6h7"; depends=[dplyr ggplot2 magrittr MASS mclust ppcor Rdpack stackoverflow]; }; dChipIO = derive2 { name="dChipIO"; version="0.1.5"; sha256="1xrafw5h071d8rfqaic3gifc80jpiddjz5x6l2cr8kgjvph60gqh"; depends=[]; }; @@ -7796,7 +7830,7 @@ in with self; { dados = derive2 { name="dados"; version="0.1.0"; sha256="1jdna8s10qz50zrsrm36y1jx489sznd86akx2lwdmriiiz3abn65"; depends=[AmesHousing babynames dplyr forcats fueleconomy gapminder ggplot2 Lahman nasaweather nycflights13 palmerpenguins pixarfilms rlang tibble tidyr yaml]; }; dae = derive2 { name="dae"; version="3.2-13"; sha256="0mq94ah21p1glvsbvdmi2p7nlgz1bvq7w3rz2z3mdqq18kz6nkjw"; depends=[ggplot2 plyr]; }; daewr = derive2 { name="daewr"; version="1.2-7"; sha256="138hmmrm3zcdb2rcilvrasndvsq38agp9bpikd3xbb7j4z1nrsl7"; depends=[FrF2 lattice stringi]; }; - daff = derive2 { name="daff"; version="0.3.5"; sha256="00zcdf215m7p3xm9yv571v09znhdqacxg69hb5b5j749mp4wdsyj"; depends=[jsonlite V8]; }; + dafishr = derive2 { name="dafishr"; version="1.0.0"; sha256="1n6b1r1awwxvdhn4znwp1p4jp3gvrjz017darjagx4cix0iisw1p"; depends=[dplyr fst ggplot2 lubridate magrittr mixtools readr readxl rlang sf stringr tibble tidyr tidyselect vroom]; }; dafs = derive2 { name="dafs"; version="1.0-38"; sha256="0ljhpw2f4hbkqh6c6gwqwwdsa4kp5qvyphig5zcn6qrb9ryf3wh1"; depends=[s20x]; }; dagR = derive2 { name="dagR"; version="1.2.1"; sha256="16dx7gpbq61xwnk3769mf6nsynqb3zgjl6l0zcvh8j0cp1s35m82"; depends=[]; }; dagirlite = derive2 { name="dagirlite"; version="0.1.0"; sha256="12j5mfxcv32qgx1yklcq8yl2kx4lkxap4biywjrj0sjx6zj60f8l"; depends=[knitr Rdpack]; }; @@ -7804,6 +7838,7 @@ in with self; { dagwood = derive2 { name="dagwood"; version="0.1.4"; sha256="1lp6swfmfzv28cfybmvj7czkfljd0sldv2qqi83q0fwcb7kxgdfz"; depends=[dagitty]; }; daiR = derive2 { name="daiR"; version="0.9.0"; sha256="0kq633jpiagbpsj0190pzpxmz8df6niqc6lwqgrahxfpda798srk"; depends=[base64enc curl fs gargle glue googleCloudStorageR httr jsonlite magick pdftools purrr stringr]; }; dail = derive2 { name="dail"; version="1.4"; sha256="0v6kx4lcrizx1mpdh5dly1clmdv7aa14xc5qlhk73zqi1shc3h6r"; depends=[dplyr magrittr readr stopwords stringr tidytext]; }; + daiquiri = derive2 { name="daiquiri"; version="1.0.3"; sha256="1fgblq35fm73d7ck9mqdyv1sza371fdky9d97lkmn05gdnqr1xj7"; depends=[cowplot data_table ggplot2 reactable readr rmarkdown scales]; }; dalmatian = derive2 { name="dalmatian"; version="1.0.0"; sha256="0hpyg8sl5v87l1hxax9sj863hy9njdyp7hnsaw3cida365p0dswa"; depends=[coda dglm dplyr ggmcmc rlang tidyr]; }; dam = derive2 { name="dam"; version="0.0.1"; sha256="1b0fi3l8jxgpr9fwvi03giq7wm39msbh0c82ffgkh54a3bbf5blc"; depends=[]; }; dampack = derive2 { name="dampack"; version="1.0.1"; sha256="0mh3x0xgcipbd9341x3sfapysrd9m8aaakc1f53vwjj31c8vayqc"; depends=[dplyr ellipse ggplot2 ggrepel mgcv reshape2 scales stringr triangle truncnorm]; }; @@ -7816,14 +7851,15 @@ in with self; { dapr = derive2 { name="dapr"; version="0.0.3"; sha256="136chxijyxrl5sbiggxf56zga26zqds647z1z2igwn5mdff1wxyb"; depends=[]; }; daqapo = derive2 { name="daqapo"; version="0.3.2"; sha256="1c00ppsqzjmrw16zdifkcigi4ll2nd2hlhj17lydmin0djg5cpby"; depends=[bupaR dplyr edeaR glue lubridate magrittr miniUI purrr readr rlang shiny stringdist stringr tibble tidyr xesreadR]; }; darksky = derive2 { name="darksky"; version="1.3.0"; sha256="1740cw5qifgvqa0nafd6lmllxi32n1zm45zlify1yn3h1qdcszhb"; depends=[ggplot2 gridExtra gtable httr plyr]; }; - dartR = derive2 { name="dartR"; version="2.0.4"; sha256="18nqiim4c1h4hyw5pa706f0kf5jxhm48p902i893s6gvqnzq5fj5"; depends=[adegenet ape crayon data_table dplyr fields foreach ggplot2 gridExtra MASS patchwork plyr PopGenReport raster reshape2 shiny SNPRelate sp StAMPP stringr tidyr vegan]; }; + dartR = derive2 { name="dartR"; version="2.7.2"; sha256="0fl78j67dab8rgddjlqvnck5qy3la7phimjrm170hirzx2dy8gah"; depends=[adegenet ape crayon dartR_data data_table dplyr fields foreach ggplot2 gridExtra MASS patchwork plyr PopGenReport raster reshape2 shiny SNPRelate sp StAMPP stringr tidyr vegan]; }; + dartR_data = derive2 { name="dartR.data"; version="1.0.2"; sha256="0gi6hgvfvh1hp60fvmij2r4fgv1qigs2biw2hw05rbl55xv93ni5"; depends=[adegenet]; }; dashCoreComponents = derive2 { name="dashCoreComponents"; version="1.10.0"; sha256="11jrlls6k6qlvi81741ga908aw22m05fhhr9jpzli982s611jrwl"; depends=[]; }; dashHtmlComponents = derive2 { name="dashHtmlComponents"; version="1.0.3"; sha256="01zrwjlhwwajk2lnv7is1r6nril83l65pynx856y9mvnm05xkb7m"; depends=[]; }; dashPivottable = derive2 { name="dashPivottable"; version="0.0.2-1"; sha256="1fv5pnvimf7w1k1lsijh9y2zk4z1z00m6m640jxvqla5i1rqy8cq"; depends=[]; }; dashTable = derive2 { name="dashTable"; version="4.7.0"; sha256="0iy07dxa90vsp3rfk8ij78j9ajz1mpxywmclxzkfj7axjyydxh5w"; depends=[]; }; dashboardthemes = derive2 { name="dashboardthemes"; version="1.1.6"; sha256="0yki4gmklrkhs6ldznabdr04smw3a112ask313z1h93dnvabr06c"; depends=[htmltools]; }; dat = derive2 { name="dat"; version="0.5.0"; sha256="1d3q4bang6pm06rfzh6h947xy3wwqn3l6ri0h4hzklg5pzwpsajd"; depends=[aoos data_table Formula magrittr progress]; }; - data_table = derive2 { name="data.table"; version="1.14.4"; sha256="1w28wg119w8pnzfdwp5yw7jgk7vv80b6cagms67i02c3dv1afqj8"; depends=[]; }; + data_table = derive2 { name="data.table"; version="1.14.6"; sha256="05h99rk2s1ds9igrqw2nhnk6yahgssszqlnw0y0p9p83lsndp30x"; depends=[]; }; data_tree = derive2 { name="data.tree"; version="1.0.0"; sha256="0pizmx2312zsym4m42b97q2184bg3hibvbdrblcga05xln84qrs0"; depends=[R6 stringi]; }; data_validator = derive2 { name="data.validator"; version="0.1.6"; sha256="1qzgwi9agsli96whzsyx7qxqzc5sixpqrd7z6fh4yrcv1i3li8yr"; depends=[assertr dplyr htmltools htmlwidgets knitr purrr R6 rlang rmarkdown shiny shiny_semantic tibble tidyr]; }; data360r = derive2 { name="data360r"; version="1.0.9"; sha256="15934ixmzw3iyqazhlz6s5cimmasf062fc8al0wdyij1f4cjcgny"; depends=[data_table jsonlite reshape2]; }; @@ -7832,7 +7868,7 @@ in with self; { dataMeta = derive2 { name="dataMeta"; version="0.1.1"; sha256="13xxayqxbps07h0xr5b7sb7q30gy5zm7jzzaq4k20fskkjrzhzcm"; depends=[dplyr]; }; dataPreparation = derive2 { name="dataPreparation"; version="1.0.5"; sha256="1lf7acdslnynp65qcxhy4p291jficz47znl9jk5143q9795kbb6w"; depends=[data_table lubridate Matrix progress stringr]; }; dataReporter = derive2 { name="dataReporter"; version="1.0.2"; sha256="1rjm6j1s229j1j9yb5y1sdi03x22qzrkmhc09k4xdmwmwmpi3s58"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; - dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.11"; sha256="0dhayggsnxjqr4wpplydayya3cns78iikmzsn3dclvyr3aw8352r"; depends=[curl httr jsonlite lubridate readr xml2]; }; + dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.12"; sha256="0jixlppbd5xmkdcsymnq0za94a466r2fq2153wdfg919z3wzbsi8"; depends=[curl httr jsonlite lubridate readr xml2]; }; datacleanr = derive2 { name="datacleanr"; version="1.0.3"; sha256="0mrfqm3lgb6sl2j35sfd00gb5121j9wmlff8k0vczr3sgmqz4dg8"; depends=[bslib clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; datadictionary = derive2 { name="datadictionary"; version="0.1.0"; sha256="006hzgsrnwrvsccski5xsnazz33y44h64q0fzq66vybv7y3zq3rc"; depends=[chron data_table dplyr haven Hmisc lubridate magrittr openxlsx tibble tidyr tidyselect]; }; datadogr = derive2 { name="datadogr"; version="0.1.2"; sha256="10zbxb9gkymw78ras9y4wrifz7cxh3y630yzjcf9ds2p557vcjzp"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; }; @@ -7840,21 +7876,23 @@ in with self; { dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.7"; sha256="10krlv0l5w021z0qd7rj93pzfjjmcjlda4xz4vq470bxbjmn1bss"; depends=[]; }; datafsm = derive2 { name="datafsm"; version="0.2.4"; sha256="0klhkbwpaqxk2mnxha8b03mpgfxk107ff9d2nx6cky59il3c1825"; depends=[caret GA Rcpp]; }; datagovindia = derive2 { name="datagovindia"; version="1.0.5"; sha256="1k04k2bz56d3k1nbx8p8pc1x3cxrdmnpgbrgmxl5i1qg3yashj91"; depends=[curl dplyr httr magrittr plyr rlang stringr]; }; - datamods = derive2 { name="datamods"; version="1.3.4"; sha256="07ya01ifif6rjrzmy4asn6y6wkvd7a5amjmiq954iv03iyrkgvsp"; depends=[data_table htmltools htmlwidgets phosphoricons reactable readxl rio rlang shiny shinyWidgets tibble]; }; + datamods = derive2 { name="datamods"; version="1.4.0"; sha256="04qgfbmnf6rcfca5dmvjcfi6mnn4xmqpivhdblr7gv4qab1javqv"; depends=[data_table htmltools htmlwidgets phosphoricons reactable readxl rio rlang shiny shinybusy shinyWidgets tibble writexl]; }; + datana = derive2 { name="datana"; version="1.0.2"; sha256="00a6r4af96v4wqbqk28hr8k75wqy24z5hann1rkglifw2vj1q6vn"; depends=[ggplot2]; }; datanugget = derive2 { name="datanugget"; version="1.0.0"; sha256="1ki4kgz6y9a313f07jml39pdxhadgs287rkpnlwvcw6kgj5qxala"; depends=[doSNOW foreach]; }; dataonderivatives = derive2 { name="dataonderivatives"; version="0.4.0"; sha256="0bp1ynarz70c2clsz60dqfd4vmgm3251jv6821db5n7fffdrr7qa"; depends=[httr2 readr tibble vetr]; }; dataone = derive2 { name="dataone"; version="2.2.2"; sha256="0509dmvf3kgk15cjbz3m9fzanbdpa5r0rz921m776a4bsjsilv4i"; depends=[base64enc datapack httr jsonlite parsedate plyr stringi stringr uuid XML]; }; datapack = derive2 { name="datapack"; version="1.4.1"; sha256="14vlcgk5sckzkc15cjvrbs113y65rqlwm1az7nsvnsqfx4x76jb1"; depends=[digest fs redland uuid XML zip]; }; datapasta = derive2 { name="datapasta"; version="3.1.0"; sha256="0sqv29iv2rv50rbw1601rn8p7gv7rsw00djhl7h1znr0igzi5b82"; depends=[clipr readr rstudioapi]; }; dataprep = derive2 { name="dataprep"; version="0.1.5"; sha256="1v48ry6xk0qg73j6js6m6fqd1bdhjv500bndb60zzl2qifrjfk2a"; depends=[data_table doParallel dplyr foreach ggplot2 reshape2 scales zoo]; }; - dataquieR = derive2 { name="dataquieR"; version="1.0.11"; sha256="16i3kwy6ash8fw4v1bpsc32y6nf3jnsbq0pi05vp0k5dz3p3ji1w"; depends=[dplyr emmeans ggplot2 ggpubr lme4 lubridate MASS MultinomialCI parallelMap patchwork R_devices reshape rlang robustbase]; }; + dataquieR = derive2 { name="dataquieR"; version="1.0.13"; sha256="03fsdqihznbwr386p5grf31qjgir3hbq16zq4nhgsw6qfpyja3j1"; depends=[dplyr emmeans ggplot2 ggpubr lme4 lubridate MASS MultinomialCI parallelMap patchwork R_devices reshape rlang robustbase]; }; datardis = derive2 { name="datardis"; version="0.0.3"; sha256="1z6rjgj7hri09nb7dldhgry4dlyx9v8zf1lqlrs7r1fwsl6znibw"; depends=[dplyr magrittr]; }; dataresqc = derive2 { name="dataresqc"; version="1.1.0"; sha256="1m7c93yk3dp1l5ysgscjvmv7z0xnmgaz4bkci4ljmmmn5a9v6r3c"; depends=[]; }; datarium = derive2 { name="datarium"; version="0.1.0"; sha256="1v98yxsxhfqlalz5qy3x5axb7fy067vf3y0qg7ngixphmy9qybym"; depends=[]; }; datarobot = derive2 { name="datarobot"; version="2.18.2"; sha256="1k6nqkcxjnhv4j11lm204nl85dibljfx3w2214mz0g9d7zjqrwbi"; depends=[httr jsonlite yaml]; }; - datasailr = derive2 { name="datasailr"; version="0.8.10"; sha256="03bnrgpwhmh67zrvap3cbaqd5k6nkp63b2h8m08xrdp1ngp5inik"; depends=[Rcpp]; }; + datasailr = derive2 { name="datasailr"; version="0.8.11"; sha256="0ym1aqrlglha36z883yf92rm0fydg1qsdgdy48z32yk41xbhp5iy"; depends=[Rcpp]; }; datasauRus = derive2 { name="datasauRus"; version="0.1.6"; sha256="0vgylf3bab0xcfg08xwvfq9yhxy6w0fxi7wp4kkxfyjb0pw15qxk"; depends=[]; }; dataseries = derive2 { name="dataseries"; version="0.2.0"; sha256="11wc2p5m8qbdmkpbd21lpwl28a1dpab88c3gqyrhsn0298lpnip4"; depends=[]; }; + dataset = derive2 { name="dataset"; version="0.1.9"; sha256="1yhr7yk1gw98macfvjz4ckgsaqw7yrszqdf11gj5b1qwgp0l53pk"; depends=[assertthat ISOcodes]; }; datasets_load = derive2 { name="datasets.load"; version="2.1.0"; sha256="1j6agly8icyn4kj88c69qzc1gyvjzhfg9ipax48qcm2m0wxzkk7n"; depends=[DT miniUI shiny]; }; datasetsICR = derive2 { name="datasetsICR"; version="1.0"; sha256="1iw8am7y6r6j21rp6r6iw1ri4c2yrgza7aw3ams4xbx6mcz3746y"; depends=[]; }; dataspice = derive2 { name="dataspice"; version="1.1.0"; sha256="1pnmb7kdx9wdvi2873rw1a7hc7spsvx4lfvfhfcqwgll46j0f1wm"; depends=[dplyr EML fs ggplot2 jsonlite magrittr purrr readr rhandsontable shiny stringr tibble tidyr whisker]; }; @@ -7862,7 +7900,7 @@ in with self; { datastructures = derive2 { name="datastructures"; version="0.2.9"; sha256="0prw24iy1af02g1nzw588dv085bdnl6pzvizpxspmwzj6vrfbaav"; depends=[BH purrr Rcpp]; }; dataverse = derive2 { name="dataverse"; version="0.3.11"; sha256="1h4bbmnzssk1bycimks6536f3n9g6bb41hdycxyx8ald2gnx1c06"; depends=[checkmate httr jsonlite readr xml2]; }; dataversionr = derive2 { name="dataversionr"; version="0.9.0"; sha256="013c45fbak32bcda9zj8dk0jw57xpbriymks4n38d9nliflqr6z5"; depends=[arrow diffdfs dplyr lubridate magrittr purrr rlang tidyr]; }; - datawizard = derive2 { name="datawizard"; version="0.6.3"; sha256="0cn9ixljf4l333d401pz5rcwqkzpl6d90as153j1wrkz9rjzm6i7"; depends=[insight]; }; + datawizard = derive2 { name="datawizard"; version="0.6.4"; sha256="0iv3h08bzmijrxyv2jz70jf53i2bk14kh0vq9a93fms5z08jv19p"; depends=[insight]; }; datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="0.3.0"; sha256="13nqvpc2gbz0pz2bnq2n6qa3qcwmfjfr15rznrsasl82s3myvfgk"; depends=[data_table dplyr Hmisc janitor labelled lubridate magrittr purrr RCurl readr readxl sf sidrar stringi stringr tibble tidyr XML]; }; date = derive2 { name="date"; version="1.2-40"; sha256="1kqiy0nvdcm8mrkm6kzz5wjxv4f58710sk7fycfcnlpf4ndn30ly"; depends=[]; }; datefixR = derive2 { name="datefixR"; version="1.3.1"; sha256="1mc0s0qv90j2qaqkkmx3k054vsir8zb2n6lwx6ybkn5k48cw8zwm"; depends=[lifecycle Rcpp rlang stringr]; }; @@ -7881,6 +7919,7 @@ in with self; { dawai = derive2 { name="dawai"; version="1.2.5"; sha256="0g52bm66jnvga4sf5n5m18k5jx56vqpn886jk0k6lydj78nkq88q"; depends=[boot ibdreg mvtnorm]; }; daySupply = derive2 { name="daySupply"; version="0.1.0"; sha256="1317g60cmqlw1wy7n7x5ifh544lzsysif6192s2k16jmgzj6cz2s"; depends=[dplyr lme4 magrittr rlang]; }; daymetr = derive2 { name="daymetr"; version="1.6"; sha256="04dyc890kqr24n0lv1dl23p6s086hcgh5l6r496yycjzlyi8bm44"; depends=[httr raster sf tibble tidyr]; }; + dbGaPCheckup = derive2 { name="dbGaPCheckup"; version="1.0.0"; sha256="0gi1n4nbzz2d3z2y39x6n8l15w6x4vh47332rkpl2iba69xhjcb5"; depends=[dplyr formatR ggplot2 labelled magrittr pander purrr questionr readxl rlang rmarkdown tibble tidyr]; }; dbMC = derive2 { name="dbMC"; version="1.0.0"; sha256="0gcgn3m10sx0naim206jkw7szl0mr7vbnkn25avvv9f8iy3y9vcv"; depends=[softImpute]; }; dbWebForms = derive2 { name="dbWebForms"; version="0.1.0"; sha256="0diz5mh4fhwrwqa7jr70vzj2jks7h2n91v2hr1mvvlbc7rzd9yki"; depends=[data_table DBI html5 stringi]; }; dbarts = derive2 { name="dbarts"; version="0.9-22"; sha256="02hmqzfk9sgz4vndnpnpcav7wlpy9xna8zdnlwgcj4a84zz2pyk8"; depends=[]; }; @@ -7889,27 +7928,27 @@ in with self; { dbflobr = derive2 { name="dbflobr"; version="0.2.2"; sha256="04gh0xfdp077f3ppf8i101q17n2r711y47qnxb9nq5ksnf37s5jp"; depends=[blob chk clisymbols crayon DBI flobr glue rlang RSQLite]; }; dbglm = derive2 { name="dbglm"; version="1.0.0"; sha256="1ljfi31n8d1mh1lr4q00klp74fz0c0jy9wdy2svhlzaszbrg76ky"; depends=[DBI dbplyr dplyr knitr purrr rlang stringr tibble tidypredict tidyr tidyverse vctrs]; }; dbhydroR = derive2 { name="dbhydroR"; version="0.2-8"; sha256="1gd3n6i47qbxp6d3y5sjvgmxc5p3afy2lhkg9020ws1xm0bk9q7d"; depends=[httr reshape2 XML]; }; - dblcens = derive2 { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; }; dblr = derive2 { name="dblr"; version="0.1.0"; sha256="0wzmhmp706mw0pkh81nsb7qzclwyhm6f2mjvpvz043ng5xrxwvvw"; depends=[CatEncoders data_table Metrics xgboost]; }; - dbmss = derive2 { name="dbmss"; version="2.7-10"; sha256="0fr28wvv8c4h4flklxaffxijgk5cy96p5sbf90yqfascqgmvvd9y"; depends=[cubature ggplot2 Rcpp RcppParallel reshape2 rlang spatstat_core spatstat_geom spatstat_random spatstat_utils tibble]; }; + dbmss = derive2 { name="dbmss"; version="2.7-11"; sha256="0d5pvn7k6m39m0bs76y5p9qbbrahsbdxx1fkmv33gg4kpk83bbl9"; depends=[cubature ggplot2 Rcpp RcppParallel reshape2 rlang spatstat_explore spatstat_geom spatstat_random spatstat_utils tibble]; }; dbnR = derive2 { name="dbnR"; version="0.7.8"; sha256="10lw8ax33l0q52pm07fi66fhm06n3yg48plgvz5cg14l98v7g7s5"; depends=[bnlearn data_table magrittr MASS R6 Rcpp]; }; dbnlearn = derive2 { name="dbnlearn"; version="0.1.0"; sha256="0kmyiad7v96mnfi24d2pn3dqmk3g82sx348m1vhhqwijfnj53brb"; depends=[bnlearn bnviewer ggplot2]; }; dbparser = derive2 { name="dbparser"; version="1.2.0"; sha256="06yk6i80xlvrjgi8lpzz82rhhmkbj980vpmpil57acjkfvaznwj6"; depends=[DBI dplyr odbc progress purrr readr RMariaDB RSQLite tibble XML]; }; dbplot = derive2 { name="dbplot"; version="0.3.3"; sha256="1svizj9hcd417yii8ll9s3mnvdqpa5awy9xl71kbwpfcnpdzqf1r"; depends=[dplyr ggplot2 magrittr purrr rlang]; }; dbplyr = derive2 { name="dbplyr"; version="2.2.1"; sha256="1xqdrfpl5l94cw717d90xx1hs5aswl6s38wr7qximzk8q12gdwx6"; depends=[assertthat blob cli DBI dplyr glue lifecycle magrittr pillar purrr R6 rlang tibble tidyselect vctrs withr]; }; dbscan = derive2 { name="dbscan"; version="1.1-11"; sha256="0bz66lvvg7290c5260ph92k4r7adgisbx3vml9096qhjwrkqwjgh"; depends=[Rcpp]; }; - dbstats = derive2 { name="dbstats"; version="2.0.0"; sha256="1njgl7slfwp9ymnz2lf1bbw99cddkwwwldjz9f86q1gfnhi5a8lj"; depends=[cluster pls]; }; + dbstats = derive2 { name="dbstats"; version="2.0.1"; sha256="1sa33ir8hj0z0d2ry4w7bhilx94alhdvjc4bzaj09alv6w39gpcn"; depends=[cluster pls]; }; dbx = derive2 { name="dbx"; version="0.2.8"; sha256="0pdf0l9h44666bmfsa43nrmi77ffzygb5mzjfrv7pk99qi7ryw46"; depends=[DBI]; }; dc3net = derive2 { name="dc3net"; version="1.2.0"; sha256="19ibsvbnq6y88vqvgkm31zrqwjhpml59d792bz0zkk50r1q5bnyr"; depends=[c3net igraph RedeR]; }; dcGOR = derive2 { name="dcGOR"; version="1.0.6"; sha256="0rvwa25r23yayx1i6xhkfaw2z85d2iyfx3slg3aq1m0fa7kj380p"; depends=[dnet igraph Matrix]; }; dccmidas = derive2 { name="dccmidas"; version="0.1.0"; sha256="0ng46i9rv4aw26af03ryhmcrb8xhhd8d72zbqiwrzhhkh18azbgx"; depends=[lubridate maxLik Rcpp RcppArmadillo Rdpack roll rugarch rumidas tseries xts zoo]; }; dccpp = derive2 { name="dccpp"; version="0.0.2"; sha256="06mykc25398bpp7dk903ykb3q5jx8m3nl7hxzsl7m2sa7iaikpnx"; depends=[Rcpp RcppArmadillo]; }; - dcifer = derive2 { name="dcifer"; version="1.1.1"; sha256="1lsfwla9dhdcdkyms10djac0vvns4f341z2467j0djgkdafdilc3"; depends=[]; }; + dcifer = derive2 { name="dcifer"; version="1.2.0"; sha256="0h7wir2xd2lr6h9hh8wr335lxr5w7grf7gjhqpg3a36ycd8mibbv"; depends=[]; }; dclone = derive2 { name="dclone"; version="2.3-0"; sha256="0w1bhzsnmnhsrrw5ffm89pj2wy2fmx14y7g6b1mb2wlwbczjzzsh"; depends=[coda Matrix rjags rstan]; }; dclust = derive2 { name="dclust"; version="0.1.0"; sha256="1icfx52v3g7kkkc11pw0xlrc8dlx5q3n2zbrd3fccmw17jzxqbg7"; depends=[openssl phylogram]; }; dcmle = derive2 { name="dcmle"; version="0.3-1"; sha256="1d6zk9413h30wcw8q1gnjzk67vshmjcpnh8zjxrsh1h69i1z6rpy"; depends=[coda dclone lattice]; }; dcmodify = derive2 { name="dcmodify"; version="0.1.9"; sha256="0p4xw74rls7i3fymsjcrazkrp22cfrfffz63l7wyb842z902smls"; depends=[settings validate yaml]; }; dcmodifydb = derive2 { name="dcmodifydb"; version="0.3.1"; sha256="1ahrsh9xlp9c7gaz1zcp2bwlb2c4nxcchw89d1r45dvqspj4c8fn"; depends=[DBI dbplyr dcmodify dplyr validate]; }; + dcortools = derive2 { name="dcortools"; version="0.1.6"; sha256="1qcblwcv2rwrl502hiv0l0r137sa4k0kx892k2w1chm40y5vri3b"; depends=[ggplot2 Hmisc pheatmap Rcpp RcppArmadillo RcppEigen Rdpack Rfast]; }; dcov = derive2 { name="dcov"; version="0.1.1"; sha256="0c3a5dzpizsxlsh723pcd0d7n0mgfc9y35vrfhmskp3c1x639mh3"; depends=[Rcpp RcppArmadillo]; }; dcurver = derive2 { name="dcurver"; version="0.9.2"; sha256="1v4h480lff1cyjjwb80dksiffh0y4b3s07lq2l2r21rn1l4mav6c"; depends=[Rcpp RcppArmadillo]; }; dcurves = derive2 { name="dcurves"; version="0.3.0"; sha256="0aw297hgvy25hs7cajm3xbh1q1gwk55491cs0d0gxdca58vr08sl"; depends=[broom dplyr ggplot2 glue purrr rlang scales survival tibble]; }; @@ -7920,15 +7959,16 @@ in with self; { ddp = derive2 { name="ddp"; version="0.0.3"; sha256="03gszqzh73zq04hqa2zgxn4fkiyr1fbhx3byxsdfzmmji46f8qip"; depends=[]; }; ddpca = derive2 { name="ddpca"; version="1.1"; sha256="1qsanid7sr2nc9pwzyz4cbjc1vg0rj255d3rnh1rb22agrgj2bc1"; depends=[MASS Matrix quantreg RSpectra]; }; ddpcr = derive2 { name="ddpcr"; version="1.15"; sha256="04q2k6kag3qx9g6iarb84ski7s895xdd20zlaw7wmidfv038kmws"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinyjs tibble]; }; + ddplot = derive2 { name="ddplot"; version="0.0.1"; sha256="03zcnc6is4qdpz3krhhz820j0an6dr7562bnmzj787xf5parwq6r"; depends=[r2d3]; }; ddst = derive2 { name="ddst"; version="1.4"; sha256="1y0immm337adkd2bjx8c5pf02w9wysv3gj26f4qf0jiba0f2wk8n"; depends=[evd orthopolynom]; }; - deBInfer = derive2 { name="deBInfer"; version="0.4.3"; sha256="0dqsbwkj3k2hm2ks13p8rsd2vh1jlw0si0xc09cqb2nwir9zvdrv"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; + deBInfer = derive2 { name="deBInfer"; version="0.4.4"; sha256="1l4wim82n5q51c1f7193d3i22qrn9kfcsddyrn8izhlwsjb9q3kp"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; deBif = derive2 { name="deBif"; version="0.1.5"; sha256="03n20p7vpa28laxhxvm7drq89vr1hadxaxhwjqc1wb44bwhy4cvy"; depends=[deSolve rootSolve rstudioapi shiny shinydashboard shinydashboardPlus shinyjs]; }; deSolve = derive2 { name="deSolve"; version="1.34"; sha256="08czbjvq07ax6q3k303w37q8lq50547cdx7yhp32mqnx8igk0m12"; depends=[]; }; deTS = derive2 { name="deTS"; version="1.0"; sha256="08yq7vfcd8fv8qw2w0f1rnj3rzys9kslmkqspmiz6prmzqvj1zf1"; depends=[pheatmap RColorBrewer]; }; deTestSet = derive2 { name="deTestSet"; version="1.1.7.3"; sha256="0v59cczhwjrk7qgngmiyc7jvx11h808w4s3ww6l83n1ylx81fgll"; depends=[deSolve]; }; - deaR = derive2 { name="deaR"; version="1.3.1"; sha256="1yrn3d4gnaimzfwq5m1kz9mchp1b2gikqxqplpl08dvlnshajjmr"; depends=[dplyr ggplot2 gridExtra igraph lpSolve plotly tidyr writexl]; }; + deaR = derive2 { name="deaR"; version="1.3.2"; sha256="0si8yxbx6zvzai046gjrdyb5yv33hxijizkmgsd5p9q3h3g54aq0"; depends=[dplyr ggplot2 gridExtra igraph lpSolve plotly tidyr writexl]; }; deadband = derive2 { name="deadband"; version="0.1.0"; sha256="02pq3d0l0wy8bdlyfir3zf46j1ascx4qajyq5cf28yl62q6ngq5d"; depends=[TTR]; }; - deal = derive2 { name="deal"; version="1.2-39"; sha256="0sw0v1mm004ky1gjw3dmvf2vb7nf2j9s9386bhqxijw63j7xnjd3"; depends=[]; }; + deal = derive2 { name="deal"; version="1.2-42"; sha256="0d516gvhqw6nfv9ijda9j04nlcjgdnnlgcf5774n8fgwjhm4azx1"; depends=[]; }; debar = derive2 { name="debar"; version="0.1.0"; sha256="03xlhnbvmkg93f6zl3x22rfwvs17fscvl8irmnm19pifk4bvbpyd"; depends=[ape aphid seqinr]; }; debugme = derive2 { name="debugme"; version="1.1.0"; sha256="1c9sg55zvf10h8198jdnpamm6f66lzw3c3jnmdp9ls6na0j0xbjd"; depends=[crayon]; }; debugr = derive2 { name="debugr"; version="0.0.1"; sha256="0lfq0s0hibd00558vl3dmvrkzxjc7q62xr8sqzai0pv9a9lhixcn"; depends=[rprojroot rstudioapi]; }; @@ -7955,13 +7995,14 @@ in with self; { deepboost = derive2 { name="deepboost"; version="0.1.6"; sha256="1nf9gjk9gjl2dz7cr3vh5lg8nxkbqwr82a132nw853axbdgbs9ga"; depends=[Rcpp]; }; deepdep = derive2 { name="deepdep"; version="0.4.1"; sha256="0w8wls8ivy4c0vdaxvmp8030wzww73i60nan9vriwbgk7vsjk16q"; depends=[cranlogs httr jsonlite]; }; deepdive = derive2 { name="deepdive"; version="1.0.4"; sha256="0q4jjq11bd52bx0vqjxsh0fz1b72pfy4gpj5p19z7p4czf4a46c6"; depends=[data_table fastDummies plyr rpart stringr treeClust]; }; - deepgmm = derive2 { name="deepgmm"; version="0.1.62"; sha256="1cllbq87xxzgba3a1prkjg7hdfkxjnmi8fgizqrlsvbxdhpg61yh"; depends=[corpcor mclust mvtnorm]; }; + deepgmm = derive2 { name="deepgmm"; version="0.2.1"; sha256="0vwh8wgbva2a47b2yiiqjwq5qww2ckb4l66265sbp1lbis0g96li"; depends=[corpcor mclust mvtnorm]; }; deepgp = derive2 { name="deepgp"; version="1.0.1"; sha256="0n3awf535jin1m7sirlcdj2b3skzssl6my7chlq392rrxfhpqnyr"; depends=[doParallel FNN foreach GpGp Matrix mvtnorm Rcpp RcppArmadillo]; }; deeplr = derive2 { name="deeplr"; version="2.0.0"; sha256="189kfcsd3cr0397krbfqh56x7h0v6i27s5jbfwr5zrf3jazllall"; depends=[httr purrr tibble tokenizers utf8]; }; deepnet = derive2 { name="deepnet"; version="0.2.1"; sha256="0gnf50007sj28daaz2r1rp8mvz1xpc2901bxl4yb1v4s4rcx6rhg"; depends=[]; }; deepredeff = derive2 { name="deepredeff"; version="0.1.1"; sha256="027dsmc3wmm61qc0vybn02c5dbnz5nwf80m9sywci4nhirz978ik"; depends=[Biostrings dplyr ggplot2 ggthemes keras magrittr purrr reticulate rlang seqinr tensorflow]; }; - deepregression = derive2 { name="deepregression"; version="0.2"; sha256="0bdzpxlf0vkgqx4kc5bflfarx3ivmg3pcw1m7nhbsrvw1zx70isz"; depends=[dplyr keras magrittr Matrix mgcv R6 reticulate tensorflow tfprobability tfruns]; }; - deeptime = derive2 { name="deeptime"; version="0.2.3"; sha256="0lzivg7nv9jyybjwcqpp3czj34f5jmwy6j0mbggq6rm935cn0jfn"; depends=[curl ggfittext ggforce ggnewscale ggplot2 gridExtra gtable lattice rlang scales]; }; + deepregression = derive2 { name="deepregression"; version="0.3.1"; sha256="1fc4av1kbxhqbf6px2370whpqyv34nczb5ryv6znikhb30d37y3f"; depends=[dplyr keras magrittr Matrix mgcv R6 reticulate tensorflow tfprobability tfruns]; }; + deeptime = derive2 { name="deeptime"; version="0.3.0"; sha256="1pl3zrdjq66bq8z97a55gksx13qmibdk8shfx8h43j7mlplv9bxn"; depends=[cli curl ggfittext ggforce ggnewscale ggplot2 gridExtra gtable lattice rlang scales]; }; + deeptrafo = derive2 { name="deeptrafo"; version="0.1-1"; sha256="16lxxd75j9bwapfx716b9fmqfz6ms4x5g98wc1yykiahjpbj8156"; depends=[deepregression Formula keras mlt purrr R6 reticulate survival tensorflow tfprobability variables]; }; default = derive2 { name="default"; version="1.0.0"; sha256="0hzxgp9la9kll5cw3m4gd02rii571xsn1v53kz407k7k6rfg5mda"; depends=[]; }; defineR = derive2 { name="defineR"; version="0.0.4"; sha256="1wm6ynicwk2dlx8m0k45kc1pa8i3z8w78xk3v40szy2ys5j80m7v"; depends=[common glue libr openxlsx readxl reporter xml2 xslt]; }; deflateBR = derive2 { name="deflateBR"; version="1.1.2"; sha256="17zsy10k12gmffbk7nagi60xj347q0bf7wr885fiylqz2xiy9fl9"; depends=[dplyr httr lubridate]; }; @@ -7986,7 +8027,7 @@ in with self; { demogR = derive2 { name="demogR"; version="0.6.0"; sha256="06x82ffbdv6ifl8xh52d3npdwha67v1ylfjp78j5pa4wdqkg221b"; depends=[]; }; demography = derive2 { name="demography"; version="1.22"; sha256="1m15capbfknr4rqxmfgj1vb7rmgambk6r9ic37149525sg7wn3j6"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; }; demu = derive2 { name="demu"; version="0.3.0"; sha256="1mp5iz8mg0d6cyqi3f6fdhk6x5xxvng5bi13b7jnlp60wpjrq0il"; depends=[ClusterR fields Matrix Rcpp RcppArmadillo spam]; }; - dendRoAnalyst = derive2 { name="dendRoAnalyst"; version="0.1.3"; sha256="1rg8xra4z3q9czkqydn2587iqwp7whscv8camrkhjpc38788cf4q"; depends=[boot pspline zoo]; }; + dendRoAnalyst = derive2 { name="dendRoAnalyst"; version="0.1.4"; sha256="0v9fgrp5vxhzc7vh1p9mmlqhs4djzizvbp5zcp0dm3ssh6wfrska"; depends=[boot pspline zoo]; }; dendextend = derive2 { name="dendextend"; version="1.16.0"; sha256="0rl4f0b73s1gdjfxgpnz87lhv131qazxb6vsv2935ad266fd0bzc"; depends=[ggplot2 magrittr viridis]; }; dendroTools = derive2 { name="dendroTools"; version="1.2.8"; sha256="095599qgikx7xbs82x4v4h555rss6vhh8b9mnpk5dj9p2lx7nf9x"; depends=[boot brnn Cubist dplR dplyr ggplot2 knitr lubridate magrittr MLmetrics oce plotly psych randomForest reshape2 scales viridis]; }; dendroextras = derive2 { name="dendroextras"; version="0.2.3"; sha256="0hb7crbgsnbcwvbk05iz5ik45n7zgysmwjj6xc46131yd8l0i1qx"; depends=[]; }; @@ -8023,7 +8064,7 @@ in with self; { descstatsr = derive2 { name="descstatsr"; version="0.1.0"; sha256="1pz5lww1dkkqvsq6h0vkch39bj76qffmmag3zlag5in75s4wj0wl"; depends=[moments zoo]; }; desctable = derive2 { name="desctable"; version="0.3.0"; sha256="1i0124lnmzdbx468lyqmzbd6disxjifqjy8ss10fl8cin4f868lb"; depends=[dplyr DT htmltools pander rlang tidyr]; }; desiR = derive2 { name="desiR"; version="1.2.2"; sha256="149wgg5mbq95wizpc24mwb8qfxjdia4qkz66bnzjgiiyfh6r46wp"; depends=[]; }; - designer = derive2 { name="designer"; version="0.1.0"; sha256="04i5pfiz43c6khz6x5pzn67n6z24dc9yvg9fs67qwp1s1vp5572i"; depends=[bslib cicerone config golem htmltools jsonlite shinipsum shiny shinyscreenshot]; }; + designer = derive2 { name="designer"; version="0.2.0"; sha256="0k14x0gn217lvd6vr4aszy2ngm3w7b45bas3g6vmik2q7h0klvqx"; depends=[bs4Dash bslib cicerone config fontawesome golem htmltools jsonlite shinipsum shiny shinyscreenshot]; }; designmatch = derive2 { name="designmatch"; version="0.4.1"; sha256="1qjyicjvlk2xp0c9p35y8ih7l6h0416nzqfsqb5psgr1p6i1vh7s"; depends=[lattice MASS Rglpk slam]; }; designr = derive2 { name="designr"; version="0.1.12"; sha256="1sn5cnqpczzvxmcib4mcwys8y98vx3pxdxcpy2v6rvrhjsqrc207"; depends=[crossdes dplyr lme4 MASS tibble]; }; designsize = derive2 { name="designsize"; version="0.1.0"; sha256="1c9b320vssw3s1ybyialg5s85k1vfllbw40qfgmvnsr3imc2inb2"; depends=[]; }; @@ -8031,7 +8072,7 @@ in with self; { desla = derive2 { name="desla"; version="0.2.0"; sha256="1m094k06bmi1bzdwdd4yrrjynpw0n5fvbv2phfanx7q10dm51f6l"; depends=[parallelly Rcpp RcppArmadillo RcppProgress Rdpack]; }; desplot = derive2 { name="desplot"; version="1.9"; sha256="0dg8j3l6x12g4h5hsxwhxvc8i03gwlvm80l03rx3wwqsx070if1y"; depends=[ggplot2 lattice reshape2]; }; details = derive2 { name="details"; version="0.3.0"; sha256="0mygkmfmfp3a2hgql514zyh4rw3v8i4g4cls6rss0fplg4pskwc7"; depends=[clipr desc htmltools httr knitr magrittr png withr xml2]; }; - detect = derive2 { name="detect"; version="0.4-4"; sha256="1gzd98b4kg5rw0kpgznrb1wmr3iavdq5983n6wqx33lga1lqq9d6"; depends=[Formula Matrix pbapply]; }; + detect = derive2 { name="detect"; version="0.4-5"; sha256="12z7ci5vblksyiprlcv8gw61cl19swq0jxk0cidlfqhwvhp19inb"; depends=[Formula Matrix pbapply]; }; detectR = derive2 { name="detectR"; version="0.1.0"; sha256="1l93b8xx6xridwcvs15xgfm7w05p3r233rxpakpii3d71rnbs8cy"; depends=[doParallel foreach glasso lavaan LogConcDEAD signal]; }; detectRUNS = derive2 { name="detectRUNS"; version="0.9.6"; sha256="0yl1x0jz66hingbl094picsiyrxzxvnz0grq63rva6nwn7pv1c0b"; depends=[data_table ggplot2 gridExtra iterators itertools plyr Rcpp reshape2]; }; detectnorm = derive2 { name="detectnorm"; version="1.0.0"; sha256="1cr5i73iigmsg0ywlm61iv1yw91vafbbf4dhvcd448qnv05cjlaw"; depends=[ggplot2 nleqslv psych Rdpack truncnorm]; }; @@ -8042,12 +8083,12 @@ in with self; { detrendeR = derive2 { name="detrendeR"; version="1.0.5"; sha256="1kx404z0xp22d1jhpn217l8wcn6p587by908a6465dfpkhc8vyyb"; depends=[dplR tkRplotR]; }; detrendr = derive2 { name="detrendr"; version="0.6.14"; sha256="18yb14blw3md83lnlzalq3aqih56nndwwljds1pjqpm0ssf1d3p0"; depends=[arrayhelpers autothresholdr checkmate doParallel dplyr filesstrings foreach ijtiff iterators magrittr plyr purrr Rcpp RcppParallel rlang stringr withr]; }; detzrcr = derive2 { name="detzrcr"; version="0.3.1"; sha256="0afi1ir8il5xmzkpmbc2m5mvmgzlqw8qdn04gbnwl74a03yaxxmj"; depends=[DT ggplot2 MASS shiny]; }; - devEMF = derive2 { name="devEMF"; version="4.1"; sha256="1n10rpripqz7x7xcrylbdq2mgzf5bprkplbxqkpws5as1rnz4q21"; depends=[]; }; + devEMF = derive2 { name="devEMF"; version="4.1-1"; sha256="0mfj2brd8rcs84v5yx2hszc21qnn5jqihb50s85nnpi8n1gj36cp"; depends=[]; }; devFunc = derive2 { name="devFunc"; version="0.1"; sha256="0f2s5gssk9napmah7zcss1rnh7pzlq90gzwcnvyr9rrq6k118n8q"; depends=[plyr stringr]; }; devRate = derive2 { name="devRate"; version="0.2.3"; sha256="05jmxlbxqx8czaxy9lhanvcz6qjwp8r33a22njr52xhfk0d4yivk"; depends=[]; }; devoid = derive2 { name="devoid"; version="0.1.1"; sha256="14cf75wih7401vmrfmswc9cihgmbyn90wg2vjkzv628mm5fgg01h"; depends=[]; }; devtools = derive2 { name="devtools"; version="2.4.5"; sha256="0jwh14clyj5flygpmifk01avs7mbnj2s1686pxzfrkcshfyhw5iq"; depends=[cli desc ellipsis fs lifecycle memoise miniUI pkgbuild pkgdown pkgload profvis rcmdcheck remotes rlang roxygen2 rversions sessioninfo testthat urlchecker usethis withr]; }; - dexter = derive2 { name="dexter"; version="1.2.1"; sha256="1v96wgr07qj39i2vh675fsp2zv11hzfksv1ipq7jpy0y7fiyn1v7"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; + dexter = derive2 { name="dexter"; version="1.2.2"; sha256="1bvrxbg564y5wwndl92xhz628c7qpjz7vh44a0r0rc7lrc8h0hsx"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; dexterMST = derive2 { name="dexterMST"; version="0.9.3"; sha256="1c30v83lx6p90l8a9kia5p0361j3ymbabyb2r6dkkak8n8zwfydl"; depends=[crayon DBI dexter dplyr igraph Rcpp RcppArmadillo rlang RSQLite tidyr]; }; dextergui = derive2 { name="dextergui"; version="0.2.6"; sha256="10v3djwani0zd27cjlf7lch7rfipnmb2p5wa7n2y5qxjqxli9z3x"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets jsonlite networkD3 RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; }; dfCompare = derive2 { name="dfCompare"; version="1.0.0"; sha256="1lhx69j0bkjbnp5jz23hrbxjcf04vf3big4k593ixz003xs2077f"; depends=[]; }; @@ -8081,8 +8122,8 @@ in with self; { diagonals = derive2 { name="diagonals"; version="6.4.0"; sha256="1c5pf23bcq47m9n2s5m5bkcksnifz9g06xc9149163i8mqhzia7l"; depends=[]; }; diagram = derive2 { name="diagram"; version="1.6.5"; sha256="1r3lyl0h7mk9cfg8smr3jydfkjdawaphnxibkxfjqa7029vkxh79"; depends=[shape]; }; dialr = derive2 { name="dialr"; version="0.4.1"; sha256="01vry39wc9ssmzkpp07szzbkigazj3l23bgrva3qmpbn5jjdi2ba"; depends=[dialrjars rJava]; }; - dialrjars = derive2 { name="dialrjars"; version="8.12.54"; sha256="1xzkxn8lvlgw0y0nhp411ikqpdqj5kfd605ycmx643rbz7m2fnjd"; depends=[rJava]; }; - dials = derive2 { name="dials"; version="1.0.0"; sha256="0flpd7bxknsscv0gk6c7zz1aid9y3z6sibkvjp9zcyc5wnqldrvj"; depends=[DiceDesign dplyr glue hardhat lifecycle pillar purrr rlang scales tibble vctrs withr]; }; + dialrjars = derive2 { name="dialrjars"; version="8.13.2"; sha256="1h9b2mvjbsxyclklc8lx8mymkbq8c5p06j5dxnxgk4mkpiazgr7i"; depends=[rJava]; }; + dials = derive2 { name="dials"; version="1.1.0"; sha256="1ly675h6shfclikwg82x8vwvrb63qmklamrbsqxsa0npbafqgvpb"; depends=[cli DiceDesign dplyr glue hardhat lifecycle pillar purrr rlang scales tibble vctrs withr]; }; diaplt = derive2 { name="diaplt"; version="1.4.0"; sha256="103hq13ql8xs1zb90is2r1lanj5vpvz9rk315zvbd8am00fshc9n"; depends=[]; }; diathor = derive2 { name="diathor"; version="0.1.0"; sha256="0nbqjaxb2fzcg9w67nbrszwv9swr1kjmg4dximfc8qdya1kmv8z9"; depends=[data_table ggplot2 purrr stringdist stringr tibble tidyr vegan]; }; dibble = derive2 { name="dibble"; version="0.2.1"; sha256="14gzr7wpfv10pkk794bnvainf8z01s0nkaz9q6by8jllbpl49pm3"; depends=[dplyr memoise pillar purrr rlang tibble tidyr tidyselect vctrs]; }; @@ -8120,9 +8161,10 @@ in with self; { diffusion = derive2 { name="diffusion"; version="0.2.7"; sha256="1j9s9vw5sc4k956bk4yp3bf4fnp7lhhkwcvlzvsh1w4dyaj8l35h"; depends=[dfoptim nloptr systemfit]; }; diffusionMap = derive2 { name="diffusionMap"; version="1.2.0"; sha256="1rvk7069brlm1s9kqj4c31mwwr3mw4hmhay95cjjjfmw5xclff2j"; depends=[igraph Matrix scatterplot3d]; }; diffusr = derive2 { name="diffusr"; version="0.1.4"; sha256="1f3h387kblw1xzdnxphwgfl1n7f6i07kk7kfslvbfxkalbish6ii"; depends=[igraph Rcpp RcppEigen]; }; + diffval = derive2 { name="diffval"; version="1.0.0"; sha256="1jz5zqk6pkprkiln8finnifh3l2859mql156rklsaabhbb6x2ras"; depends=[]; }; diffviewer = derive2 { name="diffviewer"; version="0.1.1"; sha256="01phkaaa0zylyi23siwam18i1ggfgq2m66d69lnz9ips1yh12yca"; depends=[htmlwidgets jsonlite]; }; - digest = derive2 { name="digest"; version="0.6.30"; sha256="19va0z7blshsai1jjys9vdahpfz1klicrpv8682sdnz77fa5k03v"; depends=[]; }; - digiRhythm = derive2 { name="digiRhythm"; version="1.0"; sha256="15q6iiwp9dznvmc81hwb1ni46gmkra5m9cwdf41jgv5bb35qyc0g"; depends=[crayon dplyr ggplot2 lubridate magrittr pracma readr stringr tidyr xts zoo]; }; + digest = derive2 { name="digest"; version="0.6.31"; sha256="1f9isi4i2502f88c2sh4l461hgyary2aa02zd47pb9mc1r4lya2s"; depends=[]; }; + digiRhythm = derive2 { name="digiRhythm"; version="1.1"; sha256="0wdlwgfr9rppwssh3xpsj78rqan1lsjw3nx5f855w2hh873sakwb"; depends=[crayon dplyr ggplot2 lubridate magrittr pracma readr stringr tidyr xts zoo]; }; digitTests = derive2 { name="digitTests"; version="0.1.2"; sha256="0giz0zr8rcvfv36qmqy6fpamjcansrq4bs3znnq0g97iprj0x3i5"; depends=[]; }; digitalDLSorteR = derive2 { name="digitalDLSorteR"; version="0.3.1"; sha256="1wglj3vg2d233wv431b7zla27sj9gbv1k5h66547v079qb8zvm1d"; depends=[dplyr ggplot2 ggpubr gtools keras Matrix pbapply RColorBrewer reshape2 reticulate rlang S4Vectors SingleCellExperiment SummarizedExperiment tensorflow tidyr zinbwave]; }; digitalPCR = derive2 { name="digitalPCR"; version="1.1.0"; sha256="0hwqq84yr1hnvf4bygc5425887dhqjjjyy1ils71iavcal04s8pb"; depends=[]; }; @@ -8154,7 +8196,6 @@ in with self; { discAUC = derive2 { name="discAUC"; version="0.4.0"; sha256="1l80xz5wrcikrs2b2i05jq3qkx468k891gwmmy5d1mymp4si3z0h"; depends=[dplyr glue rlang tibble]; }; discSurv = derive2 { name="discSurv"; version="2.0.0"; sha256="0k585cyz02vqk4w7w20rhn6g9rspmmlbdpv7k837021iyhwwb838"; depends=[data_table functional geepack mgcv mvnfast mvtnorm ranger Rdpack rpart treeClust VGAM]; }; discfrail = derive2 { name="discfrail"; version="0.1"; sha256="1ll8c0fwwmz2yw8w582422r8bk9lr1570d7m7w2n1flrnqpqmk8j"; depends=[Matrix numDeriv survival]; }; - discgolf = derive2 { name="discgolf"; version="0.2.0"; sha256="07clh1awnibgrh7vl4a51r8dbya2rbmicm8v8x8mq8h8am2b3j0s"; depends=[crul jsonlite xml2]; }; discharge = derive2 { name="discharge"; version="1.0.0"; sha256="1hwsdrbajmpfdc9arb1pjhx2w45dy3zrba9ibcrnpyqhhr4i1c5m"; depends=[boot checkmate CircStats ggplot2 lmom]; }; disclap = derive2 { name="disclap"; version="1.5.1"; sha256="0qsycr04xz1h90jyzxwagfkc4rkc8mb9srasvhrp7grynjxlbb9f"; depends=[]; }; disclapmix = derive2 { name="disclapmix"; version="1.7.4"; sha256="1rc5kv4abx1hxgkp3vb3f247nv887vrh9l2y189blq0p6k258575"; depends=[cluster disclap MASS Rcpp RcppProgress]; }; @@ -8173,7 +8214,7 @@ in with self; { disk_frame = derive2 { name="disk.frame"; version="0.7.2"; sha256="016sxjvbw8j6inwr1y66hck1dzpnjr79v2fiiylcpgdnc39hc0hn"; depends=[arrow benchmarkme bigreadr bit64 crayon data_table dplyr fs fst future future_apply globals glue jsonlite pryr purrr Rcpp rlang stringr]; }; diskImageR = derive2 { name="diskImageR"; version="1.0.0"; sha256="1r19k5fdjn6vkn11p5df77fnxfqaz3nciiaai0f3pr2bgpfppzka"; depends=[subplex zoo]; }; dismo = derive2 { name="dismo"; version="1.3-9"; sha256="1vmyjch2nv7x80kj453bjbzfsdyhcmf9hw68lh2b05kpnqfm491r"; depends=[raster Rcpp sp terra]; }; - disordR = derive2 { name="disordR"; version="0.0-9-2"; sha256="168k9hybndrwaspxq5sax2aa6431cj5x5gr0vpngjfwkkq51x6l4"; depends=[digest Matrix]; }; + disordR = derive2 { name="disordR"; version="0.0-9-4"; sha256="1p8lfwyc3214nc0lm2limnnx0d7vrwq7gxp18fgdxbxknd1rfk0s"; depends=[digest Matrix]; }; dispRity = derive2 { name="dispRity"; version="1.7.0"; sha256="0qrmhlmbkg0jr9dhfmx46y8vh7nmydmm0sscnj4zrz7wf7myavrm"; depends=[ade4 ape castor Claddis ellipse geometry MASS mnormt phangorn phyclust scales vegan]; }; disparityfilter = derive2 { name="disparityfilter"; version="2.2.3"; sha256="0dkk3qws631mf0g02di5rsrvh5954cykysyri0g8aqgik0j9dg06"; depends=[igraph]; }; dispeRse = derive2 { name="dispeRse"; version="1.0"; sha256="1x2v9lkmbqa4mn5rflmln4j85jhz08aa54pj9d01rxm4nnd23qdd"; depends=[raster rgdal sp]; }; @@ -8198,15 +8239,15 @@ in with self; { distillery = derive2 { name="distillery"; version="1.2-1"; sha256="1ymmxyamkq0zbz2m4gllln1ihks2hcib6gs0mls92as79srz122b"; depends=[]; }; disto = derive2 { name="disto"; version="0.2.0"; sha256="09pafy8y1ifgglqmal32dy34acx06ypsq2bgwsn6fjiqr9kw401j"; depends=[assertthat broom dplyr factoextra fastcluster fastmatch ggplot2 pbapply proxy tidyr]; }; distory = derive2 { name="distory"; version="1.4.4"; sha256="1ljrs91h4v1h5lb295hjki8bmra2lg3d1bn5x731pnv43pf3ck06"; depends=[ape]; }; - distr = derive2 { name="distr"; version="2.8.0"; sha256="1dyff4m33xmw6hxb3jxzr8vvajg3qz3rfcrfxjxwsswlddfz0zdv"; depends=[MASS sfsmisc startupmsg]; }; - distrDoc = derive2 { name="distrDoc"; version="2.8.0"; sha256="1iq2gbfbsf3h279yh3fnqsi39gdw15vc6r1g33xcb8kgmmqmvf0p"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg]; }; - distrEllipse = derive2 { name="distrEllipse"; version="2.8.0"; sha256="1ymfa8xpgs8zjp4psiwmll5z0vji496fivxmcavspzxy31cw70wx"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; }; - distrEx = derive2 { name="distrEx"; version="2.8.0"; sha256="1gwhsnlrnzyp2x97d9wfdy5pa9z3q5il934wjv4kxs9wsvkwsr5h"; depends=[distr startupmsg]; }; - distrMod = derive2 { name="distrMod"; version="2.8.5"; sha256="0bgi9vrbi6mg01i1iip3b8bqa7qzbcnd6b1w8qqr02xyqnpil9yi"; depends=[distr distrEx MASS RandVar sfsmisc startupmsg]; }; - distrRmetrics = derive2 { name="distrRmetrics"; version="2.8.0"; sha256="17kbl8b4q8w7il1f02yqr11filhbd5axjwwna20gvjim501jizwi"; depends=[distr fBasics fGarch startupmsg]; }; - distrSim = derive2 { name="distrSim"; version="2.8.0"; sha256="0g16mljlz7fnb5k6c9h5vplm3n51sdbybv9cifbia0y6p9zml383"; depends=[distr setRNG startupmsg]; }; - distrTEst = derive2 { name="distrTEst"; version="2.8.0"; sha256="06rdcwfgbhc81zqisg414nj0kji59xvhm782b63hk54a8b2zwhh5"; depends=[distrSim setRNG startupmsg]; }; - distrTeach = derive2 { name="distrTeach"; version="2.8.1"; sha256="0ssy72clpffby4b07ynvmyfm5q4m93c204v70w5428kkjq6imf5w"; depends=[distr distrEx startupmsg]; }; + distr = derive2 { name="distr"; version="2.9.1"; sha256="0pqss05qs209nbv78n01zhap15pshjkpvk4czz3ja06l1flr1dw2"; depends=[MASS sfsmisc startupmsg]; }; + distrDoc = derive2 { name="distrDoc"; version="2.8.1"; sha256="1lrh3ml47h3d3j59dfqlbza1vh11b5m16am8ilc2dfbm230xnmf9"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg]; }; + distrEllipse = derive2 { name="distrEllipse"; version="2.8.1"; sha256="0nv87i05aa72x9pj26z37j9cwlyzyhgjbv8bphnhvzf7df1a40r2"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; }; + distrEx = derive2 { name="distrEx"; version="2.9.0"; sha256="0dgv81bilq5yhwqd7qnp30q8nsaw7vpmh27xw2sl20a0mm3ihz88"; depends=[distr startupmsg]; }; + distrMod = derive2 { name="distrMod"; version="2.9.0"; sha256="0y1fig29saf070phm8gh08vbjr3jl8gjbcwdi6sz4manpl8i81w7"; depends=[distr distrEx MASS RandVar sfsmisc startupmsg]; }; + distrRmetrics = derive2 { name="distrRmetrics"; version="2.8.1"; sha256="12ig5yqn0k1f14zi96ladl3f491jrmlpii2zi49n17rp7214ny14"; depends=[distr fBasics fGarch startupmsg]; }; + distrSim = derive2 { name="distrSim"; version="2.8.1"; sha256="1z6x3bsxp9mrnnygx1048v4iadjs8kkqywjclsixmngb0nm69h61"; depends=[distr setRNG startupmsg]; }; + distrTEst = derive2 { name="distrTEst"; version="2.8.1"; sha256="0s22g7sf2q0kj8qcl09vq8prnahmm3iqc0v66kzm6hmhc314k509"; depends=[distrSim setRNG startupmsg]; }; + distrTeach = derive2 { name="distrTeach"; version="2.9.0"; sha256="0jf1v4nb900z7jcy3d34z86ykrn52xnimir1l0iv78dkh1kvwsqn"; depends=[distr distrEx startupmsg]; }; distreg_vis = derive2 { name="distreg.vis"; version="1.7.3"; sha256="1dnpcd0dpbgvnwcc83n15gr9risyzvnp5f45wg11l9fp5yi63s8j"; depends=[bamlss betareg formatR gamlss gamlss_dist ggplot2 magrittr rhandsontable shiny]; }; distributional = derive2 { name="distributional"; version="0.3.1"; sha256="0pr34yq6igb7ciqss2ldwa7gc55xvla040x8rkd8m2hcrz5mczkj"; depends=[digest farver generics ggplot2 lifecycle numDeriv rlang scales vctrs]; }; distributions3 = derive2 { name="distributions3"; version="0.2.1"; sha256="19c8s5qshqzhvl01c7nd9912vyy0nnmc7rfg8iih2jlcpqrdql86"; depends=[ellipsis ggplot2 glue]; }; @@ -8218,7 +8259,7 @@ in with self; { dittodb = derive2 { name="dittodb"; version="0.1.4"; sha256="19qw7xjrix8vlaivha2iaff7rx8i2gp1fk135y59p4rdmm05xfd1"; depends=[DBI digest glue lifecycle]; }; div = derive2 { name="div"; version="0.3.1"; sha256="1k4c34wpwfj7yqnk1x9sjzn3dc2vdzhpy8g4c00aqs3nbgcknyn8"; depends=[dplyr ggplot2 gridExtra kableExtra magrittr plotly pryr rlang rpart stringr tibble tidyr tidyverse]; }; divDyn = derive2 { name="divDyn"; version="0.8.2"; sha256="1rqk7ih0j6d3ykx7d0r0c33bcbksw4paman5f92ragw2a96d04cf"; depends=[Rcpp]; }; - diveMove = derive2 { name="diveMove"; version="1.6.0"; sha256="0ddlc89wi76kja8zz9j72p57hz3rw9xjzrj6k5h60573c5b9b1ig"; depends=[geosphere KernSmooth plotly quantreg uniReg]; }; + diveMove = derive2 { name="diveMove"; version="1.6.1"; sha256="1jq24qys802s9cab3r9fag9jq994wjg6vni6sxd2psng846hixic"; depends=[geosphere KernSmooth plotly quantreg uniReg]; }; diveR = derive2 { name="diveR"; version="0.1.2"; sha256="0n0ldc3k0ryr20794kvqxpnk8m3qc13lkl6rxw043pkwbjqj7291"; depends=[cli crayon ggmulti loon loon_data loon_ggplot loon_shiny loon_tourr rstudioapi zenplots]; }; diveRsity = derive2 { name="diveRsity"; version="1.9.90"; sha256="11pfq3syvjmfwfimjc2jnlprcnynvargr4yjd8h0aa6qzgdrrx5q"; depends=[ggplot2 qgraph Rcpp shiny]; }; diverge = derive2 { name="diverge"; version="2.0.4"; sha256="11hhak3ldnf83aaq7wd8f2wqcd3lqgmda78zdgcd6ksljq3mvwcx"; depends=[truncnorm]; }; @@ -8235,11 +8276,12 @@ in with self; { dkanr = derive2 { name="dkanr"; version="0.1.3"; sha256="1zic7qhwq3s9w70zi1f6qyf7pzm69k5a1p5fd4n3z4nbga54njxd"; depends=[assertthat dplyr httr jsonlite purrr stringr tibble]; }; dlbayes = derive2 { name="dlbayes"; version="0.1.0"; sha256="058kkh67npai2ffrjdpjn4pzj8f233znl16nj6yx8wz8lkb17cb0"; depends=[expm GIGrvg glmnet LaplacesDemon MASS]; }; dlib = derive2 { name="dlib"; version="1.0.3.1"; sha256="1rchl4f3zj0azz8d4n139daba2gz6vnm60jq45vgc9gphk2mrnnb"; depends=[Rcpp]; }; + dlm = derive2 { name="dlm"; version="1.1-6"; sha256="0mxfakryagyg2idjhw1ydp4xqk57s3z17cv69hj16lisx8q43pc9"; depends=[]; }; dlnm = derive2 { name="dlnm"; version="2.4.7"; sha256="0mbww28n95vnd6wrn1b4mfsdvnyffa8mr6ws4jqmqdc23nydl9p4"; depends=[mgcv nlme tsModel]; }; - dlookr = derive2 { name="dlookr"; version="0.6.0"; sha256="0i1w3cakp72qlq9yc6ija0qb12gyb043mj1wj6f25hh75jrg3brw"; depends=[dplyr ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown partykit purrr reactable rlang rmarkdown shiny showtext sysfonts tibble tidyr tidyselect]; }; + dlookr = derive2 { name="dlookr"; version="0.6.1"; sha256="0lnnx9r0ai79cbg4dq2aqprfql7s31y7777v1bw0931ia3nd9s51"; depends=[dplyr ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown partykit purrr reactable rlang rmarkdown shiny showtext sysfonts tibble tidyr tidyselect]; }; dlr = derive2 { name="dlr"; version="1.0.1"; sha256="13gr8rk8igbypq9mg00pyk2pjczxr1ghkj5287gijxnxch7zdknc"; depends=[digest fs rappdirs rlang]; }; dlsem = derive2 { name="dlsem"; version="2.4.6"; sha256="1h3bwqqpfjkl41b2mbfhsj0pi9kri0h0i28wiid6arjrmm87nsf8"; depends=[graph Rgraphviz]; }; - dlstats = derive2 { name="dlstats"; version="0.1.5"; sha256="00lk6fnyziaqz3hc5jvdybgsywlad755dcr9l41aqwx6gx2k1wrg"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; + dlstats = derive2 { name="dlstats"; version="0.1.6"; sha256="0bs7kgllii2nhb1sspajhlldhjav9gl0y96c949pgfijwbr01vn0"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; dm = derive2 { name="dm"; version="1.0.3"; sha256="13sh6f5da1dzd8517cgsr3lig8bihlms7bzrwgs0m4fswvj5fgfj"; depends=[backports cli DBI dplyr glue igraph lifecycle magrittr memoise pillar purrr rlang tibble tidyr tidyselect vctrs]; }; dma = derive2 { name="dma"; version="1.4-0"; sha256="003snr09hazszwqnvjrbv8vyz6ihgcfcfhrlshg451dddn920615"; depends=[MASS]; }; dmai = derive2 { name="dmai"; version="0.4.0"; sha256="0ma89jl0l598sffpikvjj40f2djjcnjq29k6y1bav4dm2g51qgmq"; depends=[dplyr ggplot2 magrittr stringr tibble tidyr]; }; @@ -8256,7 +8298,7 @@ in with self; { dng = derive2 { name="dng"; version="0.2.1"; sha256="0yi1fs4yvlsy3j128l7s5kwq8mhdd5fr74y2bzj7cjrxi7wgz2hg"; depends=[Rcpp]; }; dnr = derive2 { name="dnr"; version="0.3.5"; sha256="16s06jvwmvhxgvrmfav1xfszjrn7j2cm4jw5xyx6w5lb5434kzcq"; depends=[arm ergm glmnet igraph network sna]; }; do = derive2 { name="do"; version="2.0.0.0"; sha256="16c6ksdas678k1285vk526ga3qkfb658nq4j5z9safjkyl1d5lrp"; depends=[crayon data_table desc httr openxlsx plyr reshape2 rstudioapi rvest stringr tidyr tidyselect tmcn usethis xml2]; }; - doBy = derive2 { name="doBy"; version="4.6.14"; sha256="1ps6r7yxs0a6rpfi2yzrb9j41862za3gdl1aq9vw3j5cmgrk8w1n"; depends=[broom Deriv dplyr ggplot2 magrittr MASS Matrix microbenchmark pbkrtest tibble]; }; + doBy = derive2 { name="doBy"; version="4.6.15"; sha256="14asz3bpyvxakvpap2aajk6f5j2d3d6vrvrgnlixg5q6gdbh465m"; depends=[broom Deriv dplyr ggplot2 magrittr MASS Matrix microbenchmark pbkrtest tibble]; }; doFuture = derive2 { name="doFuture"; version="0.12.2"; sha256="0w07pmzpsfq4kvfc745s1i9b6dfn1df1wrfi4s9ys4ir3g2s8nk1"; depends=[foreach future globals iterators]; }; doMC = derive2 { name="doMC"; version="1.3.8"; sha256="18qrcvqwm4cclvk8spvyi281y8prwzivj52xmzk1l9a82j2ny65j"; depends=[foreach iterators]; }; doMPI = derive2 { name="doMPI"; version="0.2.2"; sha256="0ahwm17p3gq1yvc8v6sr6sb8z7i6zws8d1pf46qynl0gd4amg938"; depends=[foreach iterators Rmpi]; }; @@ -8270,7 +8312,7 @@ in with self; { doc2vec = derive2 { name="doc2vec"; version="0.2.0"; sha256="0249hm0103kxxsi4gks4h20wf6p00gbrk9jf8c148mbja1l56f6v"; depends=[Rcpp]; }; dockerfiler = derive2 { name="dockerfiler"; version="0.2.0"; sha256="1j773kpbg38bh7y60s4mysz67kxqhm4ziammy07iw680rpqffvms"; depends=[attempt cli desc fs glue jsonlite pak pkgbuild R6 remotes renv usethis]; }; docknitr = derive2 { name="docknitr"; version="1.0.1"; sha256="1mhdjv6yznzyx911f0m3m0i7jlzj7h12ikkxb9b6zj68bdplv30b"; depends=[knitr rstudioapi sys]; }; - doconv = derive2 { name="doconv"; version="0.1.4"; sha256="1vg45x3wwqhkwq9sw4lrni31bmzql7a70ncbjw2dj5ja8l22jjdk"; depends=[locatexec magick pdftools processx]; }; + doconv = derive2 { name="doconv"; version="0.2.0"; sha256="1pvzpxv60ghninmn5sawqqx988yl2151kqs4qj5qrb7fpgph481w"; depends=[locatexec magick pdftools processx]; }; docopt = derive2 { name="docopt"; version="0.7.1"; sha256="1zxhwizs916qm5by7nfslqnarl2q5202xc2azlhrnzk0wj3khiwz"; depends=[]; }; docopulae = derive2 { name="docopulae"; version="0.4.0"; sha256="186mfiy4ygx6spnv7yrm5h0k6nf2g1xhk1l05iij39j5al5d9j21"; depends=[]; }; docore = derive2 { name="docore"; version="1.0"; sha256="0x6c2yqr05v62ksn9a5swf44q8w7acfk00589mkipw643rg4l64y"; depends=[bit64 pracma]; }; @@ -8278,12 +8320,12 @@ in with self; { docstring = derive2 { name="docstring"; version="1.0.0"; sha256="19z5frhxbdc5c4vrkckgqbh9mx4d9w1icw8szsw9yadvbg48nlhl"; depends=[roxygen2]; }; docuSignr = derive2 { name="docuSignr"; version="0.0.3"; sha256="0q90z31svbdnvylfr0yj2f0gahvpi089c1d5llvwqy8qc5p9fbqw"; depends=[httr jsonlite magrittr]; }; documenter = derive2 { name="documenter"; version="0.1.2"; sha256="1q04b95h6va3178lwp56zc45vh838vxl071w1ym60n5v6v4jsc4f"; depends=[htmltools magrittr officer xml2 yaml]; }; - docxtools = derive2 { name="docxtools"; version="0.2.2"; sha256="0ds8qy21x7cq9qmnn6gggzf8kxdphq7nf2mx5gqx829zgkripsfq"; depends=[dplyr ggplot2 lubridate purrr rlang stringr tidyr]; }; + docxtools = derive2 { name="docxtools"; version="0.3.0"; sha256="0zfmmwnjzja80krflg2cl9a1ldg6qj1m0gppralfs59ag1jr7kqh"; depends=[dplyr ggplot2 lubridate purrr rlang stringr tidyr]; }; docxtractr = derive2 { name="docxtractr"; version="0.6.5"; sha256="1kki49g0sfhbx2d4swrkv21akws8ayrsd4h3v148xmzdlsrvhhiw"; depends=[dplyr httr magrittr purrr xml2]; }; - dodgr = derive2 { name="dodgr"; version="0.2.16"; sha256="0djml4z5hbr4xdj1a7syijysjxi9myb5xfrsy5r2db5m609s27sj"; depends=[callr digest fs magrittr osmdata Rcpp RcppParallel RcppThread]; }; + dodgr = derive2 { name="dodgr"; version="0.2.18"; sha256="1xnb4kdqjllg048y2bnl1pzq7xq15fg1nizr7ibhsfscjsgysgqg"; depends=[callr digest fs magrittr osmdata Rcpp RcppParallel RcppThread]; }; doebioresearch = derive2 { name="doebioresearch"; version="0.1.0"; sha256="1rmvb6pa71frvjszpsjaw3ahm70kyykrq6zfjqk8smgcg397k9pi"; depends=[agricolae]; }; doex = derive2 { name="doex"; version="1.2"; sha256="1r999z30ipa04pgck0hfalqxihb1bj8sdhlkkhf4plb7maaz3qm3"; depends=[]; }; - dogesr = derive2 { name="dogesr"; version="0.1.0"; sha256="1465vq5yhvhmc0apj8vlwmrqsy3g51iyn3ndv8rwd2zgbbfzcp30"; depends=[dplyr]; }; + dogesr = derive2 { name="dogesr"; version="0.1.5"; sha256="086x3hvsmx5phxrp5mpy9l6z28xxgc4n3mgrg2byix2l8klhp0cg"; depends=[dplyr ggplot2 knitr qpdf rmarkdown]; }; domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; }; domir = derive2 { name="domir"; version="1.0.0"; sha256="10kqza6r8nxlvmcx3bfqfyfvivv4pdkm7qqc859384n7dyjx88nx"; depends=[]; }; donut = derive2 { name="donut"; version="1.0.2"; sha256="0idynkhcdn9va32m1n1rxjyb7ghbkhyy1959wks2bn1a7k4yg87i"; depends=[]; }; @@ -8310,7 +8352,7 @@ in with self; { downscaledl = derive2 { name="downscaledl"; version="1.0"; sha256="0lqxngzpxj65b48j5w0n8dg6fp4lgg5zpgxc2wj6d9wh5f97l71b"; depends=[dplyr keras magrittr raster Rcpp RcppArmadillo rgdal rstack sp tensorflow]; }; downsize = derive2 { name="downsize"; version="0.2.2"; sha256="18b9shd79z0bsdnp0apqqwv6c73j4wnfiv41ywqz761nmxbldxbn"; depends=[magrittr R_utils]; }; dowser = derive2 { name="dowser"; version="1.1.0"; sha256="1yp8l6ffmrl5xph35gg49yiavisxg710djbnwnqn12m4q6cpsa7a"; depends=[alakazam ape Biostrings dplyr ggplot2 ggtree gridExtra markdown phangorn phylotate RColorBrewer rlang shazam stringr tidyr tidyselect]; }; - dparser = derive2 { name="dparser"; version="1.3.1-8"; sha256="096zpbfyi3pja17i3wgi85fm7j8abrqpp20fy52nfy1pzrm4mmhi"; depends=[digest]; }; + dparser = derive2 { name="dparser"; version="1.3.1-9"; sha256="0ln3dg3mwfqf3pjvssqnqasq87yqqp3raf5f88zrzmibvq13d6i7"; depends=[digest]; }; dpcc = derive2 { name="dpcc"; version="1.0.0"; sha256="1f4c68bvkwg82k1zanjhqqika2bfjv83mbr2khl5lhvfjwvpi1m0"; depends=[Rcpp]; }; dplR = derive2 { name="dplR"; version="1.7.4"; sha256="1gnihbgbw5dimnzf23fhlkwairfdaixs7ss6rkhk45y551hbwf65"; depends=[boot digest lattice Matrix matrixStats plyr png R_utils signal stringi stringr XML]; }; dplbnDE = derive2 { name="dplbnDE"; version="0.1.1"; sha256="0hwb4lvydqlkbcxp3jwgzkqk6sqdjkcmkya1cah60sc15n816ksd"; depends=[bnclassify]; }; @@ -8334,7 +8376,7 @@ in with self; { drawer = derive2 { name="drawer"; version="0.2.0.1"; sha256="165w0lk6kp0hw85y1q3wj50jn5jbi4rn00vgz8q0wy68qw2ymhh5"; depends=[bsplus glue htmltools magrittr shiny stringr]; }; drawsample = derive2 { name="drawsample"; version="1.0.1"; sha256="018v4amapfwxx6k4s9drcv2vwil7cplnkwlrhy9djc0a02jxx2l5"; depends=[dplyr lattice moments psych readxl shiny shinycssloaders shinydashboard tibble xlsx]; }; drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; }; - drda = derive2 { name="drda"; version="2.0.1"; sha256="1ilcjlcryi7yyqm2k27ylk8gvmkjcr308px97ija69gynjbg981s"; depends=[]; }; + drda = derive2 { name="drda"; version="2.0.2"; sha256="0vp6i62j0jgw1vh6vrlj5svzbxrpxpkgv4m4fp33k8nq4zz7af6v"; depends=[]; }; dreamer = derive2 { name="dreamer"; version="3.1.0"; sha256="10yvdg5nkw4nawy9hdqyrsgh01xga8l3hn3qi1sbjzniv7903v7d"; depends=[coda dplyr ellipsis ggplot2 purrr rjags rlang rootSolve tidyr tidyselect]; }; dreamerr = derive2 { name="dreamerr"; version="1.2.3"; sha256="0g3gl4nzfw02alhyjw9flylfr2awyijjim50j1jdnp677zqlxkmf"; depends=[Formula]; }; drf = derive2 { name="drf"; version="1.1.0"; sha256="13b31rynknzirnvgygs1ar5968xdh8dhg60ibn0g359gnzadn7ad"; depends=[fastDummies Matrix Rcpp RcppEigen transport]; }; @@ -8355,16 +8397,17 @@ in with self; { ds = derive2 { name="ds"; version="4.0"; sha256="1iic5fb27cnhsa83zg28hydrhzc01i9z0711xvk95c3gv7mbfp2p"; depends=[]; }; ds4psy = derive2 { name="ds4psy"; version="0.9.0"; sha256="1w2234bnvniivivaa9k09fblw3l7dy2fiwk611x1iwp58xjmpr7c"; depends=[ggplot2 unikn]; }; dsa = derive2 { name="dsa"; version="1.0.12"; sha256="16lqqm0lcgpkzkj7d0akamzap85aj4dyj5rs5fkb5b9bjqa5r4c5"; depends=[dygraphs forecast ggplot2 gridExtra htmlwidgets R2HTML reshape2 rJava seastests timeDate tsoutliers xts zoo]; }; - dsample = derive2 { name="dsample"; version="0.91.2.2"; sha256="18c0zxaqwgbn9kmkwlnicwd74ljy2sxj0b9ksif13pdlj3zn57h1"; depends=[MASS]; }; dsb = derive2 { name="dsb"; version="1.0.2"; sha256="155ajjpy8g0afk2l9gmagzmn2mac0sni0rwcb9r1h97wdjcyl7pl"; depends=[limma magrittr mclust]; }; - dscore = derive2 { name="dscore"; version="1.4.0"; sha256="0vjrxdgss79pmd8vkarvgqqm465byz17r7r93k5i3923xm02kavr"; depends=[dplyr Rcpp RcppArmadillo stringr tidyr tidyselect]; }; + dscore = derive2 { name="dscore"; version="1.7.0"; sha256="0nkfx4ghnsn8ks6cxmyfhm61jli73ybv477i7q86xj2yb013vdyp"; depends=[dplyr Rcpp RcppArmadillo stringr tidyr tidyselect]; }; + dsdp = derive2 { name="dsdp"; version="0.1.0"; sha256="02646y75gng5ifblib834i19qc9jgl6i3grlk4p3nsy7xs8cl02s"; depends=[ggplot2 rlang]; }; dse = derive2 { name="dse"; version="2020.2-1"; sha256="170rxrniszs8h59ah4mn4mz8d7kzix4g3vlz4icd8w6bl40c6ykc"; depends=[setRNG tfplot tframe]; }; - dsfa = derive2 { name="dsfa"; version="1.0.0"; sha256="13y25bgy9qyncgm3z10irpnjw5bgqsqq2wmkmi5yqpdw3xm5d5f6"; depends=[copula gratia mgcv Rdpack sn]; }; + dsfa = derive2 { name="dsfa"; version="1.0.1"; sha256="0ai7hdr1jbp842ixjcvadksi4pcjplyglp27dlmfkjp0p0jsfbww"; depends=[copula gratia mgcv Rdpack sn]; }; dsims = derive2 { name="dsims"; version="1.0.1"; sha256="15yy3kivg26pmzaby0kaj4vq4526jrnvpiqj24bcvh7sskv8myif"; depends=[Distance dssd ggplot2 gridExtra mgcv mrds rgeos rlang rstudioapi sf sp]; }; dslabs = derive2 { name="dslabs"; version="0.7.4"; sha256="05v51rckpfjz2cbms250sv0q34l0ip841w9ardvs51s2x7r8qypc"; depends=[ggplot2]; }; dslice = derive2 { name="dslice"; version="1.2.0"; sha256="1k9hxpmr563p8bpd9m991lx5ig366mzk9j1lzldci9pq4jiayin1"; depends=[ggplot2 Rcpp scales]; }; dsm = derive2 { name="dsm"; version="2.3.3"; sha256="159hlllbp4qy5dxmxgsjcl2ksflq7z7v1ra5d7piyanm9c632q8a"; depends=[ggplot2 mgcv mrds nlme numDeriv plyr statmod]; }; dsmisc = derive2 { name="dsmisc"; version="0.3.3"; sha256="19760hcb5154rayhj72r48r7glh2qyaf178zkxplywmsw338kws4"; depends=[Rcpp stringr]; }; + dsmmR = derive2 { name="dsmmR"; version="0.0.96"; sha256="1857jxx22jvs3022qdf1nr2krds8g7b8lkd5vchvf01h1fqja2nj"; depends=[DiscreteWeibull]; }; dsos = derive2 { name="dsos"; version="0.1.1"; sha256="0fb2wwv7g829yvvgkkhsmcgspkx316zr828vqs0hbrr6ll7f8sfa"; depends=[data_table future_apply ggplot2 scales simctest]; }; dsrTest = derive2 { name="dsrTest"; version="1.0.0"; sha256="1nfwcab6p7swki8d2j2dywj93xidkjqcq84majvq90yabx353jd3"; depends=[asht exactci loglognorm]; }; dssd = derive2 { name="dssd"; version="1.0.0"; sha256="1svzd3d32lw6qvrpkgnidyrpq1903y2a1xplyq51gf2niwjyaxa0"; depends=[ggplot2 rgdal sf]; }; @@ -8386,11 +8429,10 @@ in with self; { dtwSat = derive2 { name="dtwSat"; version="0.2.8"; sha256="1k4xdnx2ca2sr4pba59q86860bzwxsg94mzr56gjdyfp1rmasqv3"; depends=[caret data_table dtw foreach ggplot2 lubridate mgcv plyr proxy raster RColorBrewer Rdpack reshape2 rgdal scales sp xtable zoo]; }; dtwclust = derive2 { name="dtwclust"; version="5.5.11"; sha256="1n4xgjd712agkhbqyyc4jy661rg1lmjfqwg778bfma17y6ad7gzp"; depends=[clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix proxy Rcpp RcppArmadillo RcppParallel RcppThread reshape2 RSpectra shiny shinyjs]; }; dual = derive2 { name="dual"; version="0.0.4"; sha256="0ssdq9gjys9iskwpkllp0m2ig2s7j6jmyq1b5j5lkns5f5aqa7j6"; depends=[]; }; - dual_spls = derive2 { name="dual.spls"; version="0.1.2"; sha256="0cy3l715bf8l6yx5sdqmz9v5an3jr0zqhc99hzqv8iyzrdrd8hwd"; depends=[pdist]; }; dualtrees = derive2 { name="dualtrees"; version="0.1.4"; sha256="05mxwiwnv48jf6ya5qmfc7g2w8wkzhk56k9g0gr2m4cpfab7d5h2"; depends=[]; }; duawranglr = derive2 { name="duawranglr"; version="0.6.7"; sha256="0hxmvyl81xlp3vv1w7462cjfa9hdz5lki0p5pn0ik7dv5aap3wbq"; depends=[digest dplyr haven readr readxl]; }; dub = derive2 { name="dub"; version="0.2.0"; sha256="066lzyk44380mf17vx4db4a3a4rs7zl85mj5hjg172khjbqnbixw"; depends=[]; }; - duckdb = derive2 { name="duckdb"; version="0.5.1"; sha256="0pn1d7jvv6hd8glaj4vd60q2clb68l5ncm85mw057nhqllqjzram"; depends=[DBI]; }; + duckdb = derive2 { name="duckdb"; version="0.6.1"; sha256="085cpb0rhiyipffzdqqscblrwav5hfz57r3475ccjn9xyf7n0pmw"; depends=[DBI]; }; duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; }; dumbbell = derive2 { name="dumbbell"; version="0.1"; sha256="0v0b4wbfskvcnzx10z9v4rf3mq8ccswz63pd6i1z7mggnwv38ps5"; depends=[data_table dplyr ggplot2 rlang rstatix tidyr tidyverse]; }; dummy = derive2 { name="dummy"; version="0.1.3"; sha256="081a5h33gw6ym4isy91h6mcf247c2vsdygv9ll07a3mgjcjnk79p"; depends=[]; }; @@ -8404,25 +8446,25 @@ in with self; { dwlm = derive2 { name="dwlm"; version="0.1.0"; sha256="0n5dil9qvyy4gish3wnv8bzq0ci1p0dr2vmbbadl29jl7rd1v0rc"; depends=[]; }; dwp = derive2 { name="dwp"; version="1.0"; sha256="1q8gbn18gsgknazzvdg5qg2lzqdaz3x14w210hw06q98dfpkvfih"; depends=[boot expint GenEst gtools invgamma magrittr MASS matrixStats mvtnorm numDeriv plotrix pracma sf statmod VGAM]; }; dyads = derive2 { name="dyads"; version="1.2.1"; sha256="0nx4gx51p0qz1565yn7xg0ijrkqvn9ql9hrmp5lwl4lxvsjnwki1"; depends=[CholWishart MASS mvtnorm RcppZiggurat Rfast]; }; - dycdtools = derive2 { name="dycdtools"; version="0.4.2"; sha256="0i5wrmcmryf6pl07c08hk8hzchdal63czh280g040n8c4i9gkz6b"; depends=[dplyr ggplot2 hydroGOF lubridate ncdf4 R_utils RColorBrewer tidyr]; }; + dycdtools = derive2 { name="dycdtools"; version="0.4.3"; sha256="06hm00mfkkg5yxpf30xb4i21bna0hpa0g86vx9qz9vf7f7cvdwjx"; depends=[dplyr ggplot2 hydroGOF lubridate ncdf4 R_utils RColorBrewer tidyr]; }; dydea = derive2 { name="dydea"; version="0.1.0"; sha256="15alr3f6wkkpjd5wmcjazi58yc8gwcqr662mjwlfg15r94fzqrlg"; depends=[Chaos01]; }; dygraphs = derive2 { name="dygraphs"; version="1.1.1.6"; sha256="022j007mzfa9k2n31yg4aizcsf571vv3jip092h23rqj03rk3ly3"; depends=[htmltools htmlwidgets magrittr xts zoo]; }; dymo = derive2 { name="dymo"; version="1.1.0"; sha256="0s1gpi5qiafkf91awyx52qw15qs7m18bql51jibgh1lqnqgv1757"; depends=[fANCOVA ggplot2 greybox imputeTS lubridate MASS matlib modeest moments narray purrr readr scales tictoc]; }; dyn = derive2 { name="dyn"; version="0.2-9.6"; sha256="16fqv9k7yxdgybwzafjkyqm16qpgqz13lcjpi6a1nc8xbzlzh0gb"; depends=[zoo]; }; dyn_log = derive2 { name="dyn.log"; version="0.4.0"; sha256="0vlzv6zy29qhygm77kww65wpnp77a93ja13vr4p2yyychrjspqx3"; depends=[crayon glue R6 rlang stringr yaml]; }; dynBiplotGUI = derive2 { name="dynBiplotGUI"; version="1.1.6"; sha256="04026jz4vdyj2a2kry5kk5k84cy4vqqrcn328hxwnwh7r8i7klvn"; depends=[tcltk2]; }; - dynConfiR = derive2 { name="dynConfiR"; version="0.0.1"; sha256="1ndm5ccs8lpp00mb184paq84kzs9p7a39yzqpcyfdy7w7cl618bd"; depends=[dplyr Hmisc logger magrittr minqa progress Rcpp rlang rtdists]; }; + dynConfiR = derive2 { name="dynConfiR"; version="0.0.2"; sha256="11grish5x9xiw6gkr2bmg1vpi2hdqw7j52czhgc9d9gxvxlyjxp8"; depends=[dplyr magrittr minqa progress Rcpp rlang]; }; dynCorr = derive2 { name="dynCorr"; version="1.1.0"; sha256="0l5k764j1zhsqpgp0ndihah63hsk3zv9hviixfmh4h3i0sr0q52p"; depends=[lpridge]; }; - dynRB = derive2 { name="dynRB"; version="0.17"; sha256="0zihmhky087l8hl5jmwlkjmiihn4v3bqwfzyjzzc62g8kcmq0mkp"; depends=[corrplot dplyr foreign ggplot2 RColorBrewer reshape2 vegan]; }; + dynRB = derive2 { name="dynRB"; version="0.18"; sha256="0sz0a1g6z48f0s7ch86y9mvazwk4gdswjj179a13d0yjhy9rgpk0"; depends=[corrplot dplyr foreign ggplot2 RColorBrewer reshape2 vegan]; }; dynaSpec = derive2 { name="dynaSpec"; version="1.0.1"; sha256="0wzfy50602wlsh4sbfjadsr01f3az2lvk5c4px3qmcvv5gybd6w0"; depends=[ari av gganimate ggplot2 magrittr NatureSounds pbapply png scales seewave tuneR viridis]; }; dynaTree = derive2 { name="dynaTree"; version="1.2-14"; sha256="11aq7z6ayz9yi6hjc4nw1fa1sq4c9sgpiqp2ihznfq06zj8rd7nl"; depends=[]; }; - dynamAedes = derive2 { name="dynamAedes"; version="2.1.0"; sha256="0zpqkn8z4rcyrg5yh45ncaz7j3knc8vgl28k0kfp5dr2q7i4zsbm"; depends=[doParallel drc fields foreach insol raster slam sp]; }; - dynamac = derive2 { name="dynamac"; version="0.1.11"; sha256="0dzw4h128z53vwdpkikhxqil0xjrcjrp1zmz0fy2qhq0n74sdyar"; depends=[lmtest MASS]; }; + dynamAedes = derive2 { name="dynamAedes"; version="2.1.1"; sha256="0a4wc8sx4mh2dpsp998raapi2bd5gb9bfd0b0a54z6j0lfsjkv5v"; depends=[doParallel drc fields foreach insol raster slam sp]; }; + dynamac = derive2 { name="dynamac"; version="0.1.12"; sha256="0gggzhidn5z4g7pzqx1bg56prnh9krph65k3yj677qrff12abbx9"; depends=[lmtest MASS]; }; dynamic = derive2 { name="dynamic"; version="1.1.0"; sha256="15jxly44rj2x79jvps2ln0hrm1384p56yll9jk96w1vhaf3gbsxm"; depends=[dplyr ggplot2 lavaan magrittr patchwork purrr simstandard stringr tibble tidyr]; }; dynamicTreeCut = derive2 { name="dynamicTreeCut"; version="1.63-1"; sha256="1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3"; depends=[]; }; dynamichazard = derive2 { name="dynamichazard"; version="1.0.2"; sha256="1khfy2fhvzgp165arj1yqvqi5p6lg94sxikwp5s5dxnsgzny00xm"; depends=[boot Rcpp RcppArmadillo survival]; }; dynatop = derive2 { name="dynatop"; version="0.2.3"; sha256="06wp8ld22k3r76imsj8wkrpplmbdlgbl71p94ddglwp8yfq1igsp"; depends=[R6 Rcpp xts zoo]; }; - dynatopGIS = derive2 { name="dynatopGIS"; version="0.2.3"; sha256="00mzyq2fl725yq8laijdi8v8ibq2c9ndjxx6xddbiqfyisy6g1x1"; depends=[jsonlite R6 raster]; }; + dynatopGIS = derive2 { name="dynatopGIS"; version="0.2.4"; sha256="0g4v48nvzsby6h2rr65s7palc3bsp552cmrsins56kmh0dmwdm0c"; depends=[jsonlite R6 terra]; }; dyncomp = derive2 { name="dyncomp"; version="0.0.2-1"; sha256="13wp2k8nbgrbrqng2dmgy0ixgidk51wq9y7mv5pdbvdajxdsyh11"; depends=[zoo]; }; dyndimred = derive2 { name="dyndimred"; version="1.0.4"; sha256="1rj45bgms1x0zm1xjw2ylm45w9xnd68pmgb8dckzkszqg27d0fbh"; depends=[dynutils irlba lmds tibble]; }; dynetNLAResistance = derive2 { name="dynetNLAResistance"; version="0.1.0"; sha256="018y3m648ni31rlisjfnrx1d10mm48wpxanlnnxxpnqxjcywg2x8"; depends=[doParallel foreach igraph]; }; @@ -8489,30 +8531,30 @@ in with self; { easypower = derive2 { name="easypower"; version="1.0.1"; sha256="1vf0zv55yf96wjxja6ifdjvgc9nw0jl0hnc1ygyjd8pmwbgdz9bl"; depends=[pwr]; }; easyr = derive2 { name="easyr"; version="0.5-10"; sha256="1qiw3bvhn2zdl6gzj90zl09mqk8ba6cd5pbl917hpfa818z98z82"; depends=[data_table digest dplyr foreign glue Hmisc lubridate openssl readxl readxlsb rlang rprojroot stringr XML]; }; easyreg = derive2 { name="easyreg"; version="4.0"; sha256="1w4wlhziyhdyldm0zgnm73fnxrh0fv8hwcw5j8ircxb4npx7bcgg"; depends=[nlme]; }; - easystats = derive2 { name="easystats"; version="0.5.2"; sha256="0yyvcla46yvbaa0ss2adfz5arxw6pw1if2bjf2lg9k1p6knhvs64"; depends=[bayestestR correlation datawizard effectsize insight modelbased parameters performance report see]; }; + easystats = derive2 { name="easystats"; version="0.6.0"; sha256="09a2gshg0h01w79g3zq66v5h0vbkrz9pgj3dijmccix28bmmqar3"; depends=[bayestestR correlation datawizard effectsize insight modelbased parameters performance report see]; }; eat = derive2 { name="eat"; version="0.1.3"; sha256="09lbgzc6qzvgksk0gdwlldd928mdibh5w2397nnjg4qx27lvj9yq"; depends=[conflicted dplyr ggparty ggplot2 ggrepel lpSolveAPI partykit Rdpack reshape2]; }; - eatATA = derive2 { name="eatATA"; version="1.1.0"; sha256="15fwwvgvjk87llaslz2n0sy51178b97f1apcrycw3mc23iib5r4h"; depends=[lpSolve mathjaxr Matrix Rglpk]; }; + eatATA = derive2 { name="eatATA"; version="1.1.1"; sha256="1pm66hvjqcgjbdkvfwxn3myzb6a458hkwg7cd6lhkp1mmj7anigs"; depends=[lpSolve mathjaxr Matrix Rglpk]; }; eatDB = derive2 { name="eatDB"; version="0.5.0"; sha256="0lym1g411ykb2vzi5yr570lmyh30br667wkm5dvnvfs7bsmk05il"; depends=[DBI RSQLite]; }; eatGADS = derive2 { name="eatGADS"; version="0.20.0"; sha256="1wr186fzrpi3dix27m55xvkx55rgbdzx5zgs6gngwjzljqzhwa92"; depends=[data_table eatDB eatTools haven hms plyr stringi tibble]; }; - eatRep = derive2 { name="eatRep"; version="0.14.5"; sha256="12s2qpacb15jx1ra0n8423mdk00waqhp1lb7b3cm11c5kp6kag5n"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; - eatTools = derive2 { name="eatTools"; version="0.7.3"; sha256="13i5ldaqxx3qch6pwm647m73k7wqzv585bf6krb0yns1a3kagm76"; depends=[data_table]; }; + eatRep = derive2 { name="eatRep"; version="0.14.6"; sha256="1pmjfz2m7z0n32cdzhxjxx3cllvhrd8nap9lqbfj8avd5sbsvfbp"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; + eatTools = derive2 { name="eatTools"; version="0.7.4"; sha256="0qmbwwvqfkyd4z41hihza0996dvsvqshs3pqblfzdlbzyn7glh5b"; depends=[data_table]; }; ebGenotyping = derive2 { name="ebGenotyping"; version="2.0.1"; sha256="1jllzc7kvvckrws8qhgvwy626llyb68sp1davp7swx48sf7rwcxc"; depends=[]; }; eba = derive2 { name="eba"; version="1.10-0"; sha256="03jr54xq109x9bf8kcs8mi7am17l9ya3xdkdppd8imwd2paqrssk"; depends=[nlme psychotools]; }; ebal = derive2 { name="ebal"; version="0.1-8"; sha256="06hkk0fargzhzqn841c406r72y7jd53mjxgi4hzb2ahnpaiq2q1l"; depends=[]; }; ebci = derive2 { name="ebci"; version="1.0.0"; sha256="00fa2y4ha9nlbjd01qckrrn721s63ja61n5jr4wm7ac6y7xivb2i"; depends=[]; }; ebdbNet = derive2 { name="ebdbNet"; version="1.2.6"; sha256="1qzwpr76nwvgylqdg7vhrbvh2lb1zrxx3g120yz156hhs4awv4kz"; depends=[igraph]; }; - ebirdst = derive2 { name="ebirdst"; version="1.2020.1"; sha256="16k4w1nn5f2pj57k9mrgknw67svdngwmykajvcwdps763kl3s28j"; depends=[DBI dplyr gbm ggplot2 gridExtra jsonlite magrittr mgcv precrec PresenceAbsence raster rgdal rlang RSQLite sf stringr tidyr viridisLite]; }; + ebirdst = derive2 { name="ebirdst"; version="1.2021.1"; sha256="19hz86a0za72av6gdbjsxx0m0cmgrnsbqnj1kksw7zhcwsa4za6p"; depends=[DBI dplyr gbm ggplot2 gridExtra jsonlite magrittr mgcv precrec PresenceAbsence raster rgdal rlang RSQLite sf stringr tidyr viridisLite]; }; ebmc = derive2 { name="ebmc"; version="1.0.1"; sha256="1z6s1blc2b6b13pk2sd6lcczdcldgjh65cnycjcw7d2g2hnxcifh"; depends=[C50 e1071 pROC randomForest rpart smotefamily]; }; ebnm = derive2 { name="ebnm"; version="1.0-9"; sha256="0izzfylcmq6zajngjyw85kbr8jys49qcgsadqkj85v2k1hg2jw7q"; depends=[ashr deconvolveR dplyr ggplot2 horseshoe magrittr mixsqp rlang truncnorm trust]; }; ebreg = derive2 { name="ebreg"; version="0.1.3"; sha256="1xrs9afjd5hkdmhglj3md5i5hm7awlcdlccz3y2lw4c73lx31ywz"; depends=[lars Rdpack]; }; + ebvcube = derive2 { name="ebvcube"; version="0.1.2"; sha256="02zmq4437r6d2988vwlb21x6i4hgvg3mn790qqxsz5qjivpnfz21"; depends=[checkmate curl DelayedArray ggplot2 HDF5Array jsonlite memuse ncdf4 ncmeta reshape2 rhdf5 stringr terra tidyterra withr]; }; ec50estimator = derive2 { name="ec50estimator"; version="0.1.0"; sha256="1zg4p1734q2jzifzfi2lf9wz3687s3cdn0yzkiwbc6w49mgdw877"; depends=[dplyr drc magrittr tibble tidyr]; }; - ecb = derive2 { name="ecb"; version="0.4.0"; sha256="0hn1d1hxilwxxmxzzpdcj81d4vy8fbjk1z09kw7j0b2p04wrdlkc"; depends=[curl httr rsdmx xml2]; }; ecd = derive2 { name="ecd"; version="0.9.2.4"; sha256="0cdfdbkjjxs78bvvy5zrax0qgcc5fzhlxl3wqapfxigf5xlxlavh"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom Rmpfr RSQLite stabledist xtable xts yaml zoo]; }; ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; - ecespa = derive2 { name="ecespa"; version="1.1-15"; sha256="1rr9b9bz8xqadj7mnix6dbs04dfbw8p9wyfilks9slkf1232nyav"; depends=[spatstat spatstat_core spatstat_geom spatstat_random]; }; + ecespa = derive2 { name="ecespa"; version="1.1-16"; sha256="1hlfrbwy119gwqf39z81j3nsc1y6gsyh2jy7qid7hp5llbmym10k"; depends=[spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random]; }; ech = derive2 { name="ech"; version="0.1.2.0"; sha256="0xkgbqs6wmfp6a7dih4n850dw6ky596hlpmfrv72lnp77w03pll9"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken purrr readxl rlang srvyr statar stringr survey tidyr]; }; echarts4r = derive2 { name="echarts4r"; version="0.4.4"; sha256="1xwr6282mnbg4hmljfanvdkya3hk8hix4g1pzw69w8x715p2b142"; depends=[broom corrplot countrycode dplyr htmltools htmlwidgets jsonlite purrr rstudioapi scales shiny]; }; - echarty = derive2 { name="echarty"; version="1.4.7"; sha256="0h2zassbc3r99466swlc5j991xpmiwqql57vwls74yn2pi1cavdc"; depends=[data_tree dplyr htmltools htmlwidgets jsonlite shiny]; }; + echarty = derive2 { name="echarty"; version="1.5.0"; sha256="0ipnci76yn8gqa5jk51aprywd54933fgqf2mdp2zfwcwirgz1642"; depends=[data_tree dplyr htmltools htmlwidgets jsonlite shiny]; }; echelon = derive2 { name="echelon"; version="0.1.0"; sha256="0dw15igx8jwgfr1f7p5pspxjiqhqmfp7shdhq8g07f4bj76irzm4"; depends=[]; }; echo_find = derive2 { name="echo.find"; version="4.0.1"; sha256="1nadqqpxgx2ck16nzjp5ajm6714452qzllg5cq1jpisv1yb31db2"; depends=[boot minpack_lm]; }; echogram = derive2 { name="echogram"; version="0.1.2"; sha256="0kir7x32fk3fc63kr3b2j0hfkmivs2pwrlxyjvdg7xqc59hjp3ma"; depends=[geosphere readHAC]; }; @@ -8522,10 +8564,10 @@ in with self; { ecm = derive2 { name="ecm"; version="6.3.0"; sha256="1g8y8wks7asjyybdh4nf19w5v8kvl56n69dl0sd0mlir98i4jmr3"; depends=[car earth lmtest sandwich urca]; }; ecmwfr = derive2 { name="ecmwfr"; version="1.4.0"; sha256="1l2w8rgxb8dphnfwvhxf09k8h79zy0qxlwz6rf2gbx0kyh5h7zi8"; depends=[curl getPass httr keyring memoise R6]; }; ecoCopula = derive2 { name="ecoCopula"; version="1.0.2"; sha256="1j3n9h7rm66r8vmzzhy5mjh36gs1qnsh7rq33ymjpkkfy698gbpm"; depends=[betareg doParallel foreach glasso glm2 igraph MASS mgcv mvabund ordinal plyr sna tweedie]; }; - ecochange = derive2 { name="ecochange"; version="2.9"; sha256="1sz58rxwkq387pbc1hdc7g0swk054shz5xpfij9wdz7llx0pjvk4"; depends=[getPass ggplot2 httr landscapemetrics lattice raster rasterDT rasterVis rlang sf sp tibble]; }; + ecochange = derive2 { name="ecochange"; version="2.9.1"; sha256="1m27m0m7ccirjdr4c76lnj1ilw979i8wfc2xjja0drcnihlbspqa"; depends=[getPass ggplot2 httr landscapemetrics lattice raster rasterDT rasterVis rlang sf sp tibble]; }; ecocomDP = derive2 { name="ecocomDP"; version="1.2.1"; sha256="06im6d0fx749ic6kjbxa6mk4cn98lz2q7939v627qrhwjkmmgx7a"; depends=[data_table dplyr EML emld geosphere ggplot2 httr lubridate magrittr neonUtilities RColorBrewer rlang rmarkdown stringr tidyr uuid xml2]; }; ecodist = derive2 { name="ecodist"; version="2.0.9"; sha256="1m78bgbr7xjlc01q4n921y3aq2nkdbdkv9qpppfarw0d77pqpsdf"; depends=[]; }; - ecolMod = derive2 { name="ecolMod"; version="1.2.6.3"; sha256="17lsakz4kjc34v04c2j1blnskxpv4qv6phlp5ah691f2v4p147hx"; depends=[deSolve diagram rootSolve shape]; }; + ecolMod = derive2 { name="ecolMod"; version="1.2.6.4"; sha256="1kbllyh986468182q28g0hhyf2y58lcqd0wc7izi0fcw3ww2xyh6"; depends=[deSolve diagram rootSolve shape]; }; ecolTest = derive2 { name="ecolTest"; version="0.0.1"; sha256="0gkhf8gdjvkys54x0qx0h5i0lz0ksba6xdy15wzblzhym43vh9wf"; depends=[]; }; ecolottery = derive2 { name="ecolottery"; version="1.0.0"; sha256="0w5aq1aaqzz74vlj8hgnmn60l8rdrchx022dpspqnpvpzdlh65z5"; depends=[abc ggplot2]; }; econet = derive2 { name="econet"; version="1.0.0"; sha256="1igcyhn0gzv82rm5ki59ivmr3q9ryrimyfwybnppcpvg38wdpvwj"; depends=[bbmle doParallel dplyr foreach formula_tools igraph intergraph MASS Matrix minpack_lm plyr progressr sna spatstat_utils]; }; @@ -8537,7 +8579,7 @@ in with self; { ecorest = derive2 { name="ecorest"; version="1.0.0"; sha256="13x95z99yqld1fvfgzbm6ahrnvfvcqwlb23yjr187yg83iynh79v"; depends=[viridis]; }; ecosim = derive2 { name="ecosim"; version="1.3-3"; sha256="190xf0xy1cw40qx8x6y4m9avspxh0y11ffl3s18d5d2zr7rj3ag2"; depends=[deSolve stoichcalc]; }; ecospace = derive2 { name="ecospace"; version="1.4.2"; sha256="0vfaf27bv687ypxg5apzv63rl495rxyflqw33j17i4h0s7cjkgrm"; depends=[FD]; }; - ecospat = derive2 { name="ecospat"; version="3.3"; sha256="0gh4n6d4fcnlpp1xd12j881v40lvph4f4pg1j4hj0w17xjzz9zcf"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo ecodist foreach gbm gtools Hmisc ks maptools matrixStats nabor poibin PresenceAbsence randomForest raster sp vegan]; }; + ecospat = derive2 { name="ecospat"; version="3.4"; sha256="0l93v8rbq41ll36riq6vhb22g5prp2rnlbn8i4lq85vvg1l00zfy"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo ecodist foreach gbm gtools Hmisc ks maptools matrixStats nabor poibin PresenceAbsence randomForest raster sp vegan]; }; ecostats = derive2 { name="ecostats"; version="1.1.11"; sha256="11h5s196aap64jch1123srbwy3907cvc4vgh0lvn5wkxbszrzypc"; depends=[ecoCopula GET MASS mgcv mvabund mvtnorm]; }; ecostatscale = derive2 { name="ecostatscale"; version="1.0"; sha256="14i5wg5qxqn3qzycgqda6blb0imkckq23gl3c3whfa72a3a8y30q"; depends=[deSolve mvtnorm]; }; ecotox = derive2 { name="ecotox"; version="1.4.4"; sha256="01sc2lf2kca7wqqyd3gk48va39gb7ijzgs2smgb2k4xbzjqndg08"; depends=[tibble]; }; @@ -8555,14 +8597,14 @@ in with self; { edcpR = derive2 { name="edcpR"; version="1.0.1"; sha256="02d33cd9pkcjrbl9qipcjzkhrc68j7bybg1hpnsngiz4wmf3bfik"; depends=[]; }; eddington = derive2 { name="eddington"; version="2.1.1"; sha256="0v88v2xmvirnj661jsg2qh7n8afaw71mqks9csnmmz3c16agp7b6"; depends=[Rcpp]; }; edeaR = derive2 { name="edeaR"; version="0.9.1"; sha256="1zv6fr7n8arx610ccbml04gfrzm9ry3s0lw68hhyijw43xvxrd3z"; depends=[bupaR cli data_table dplyr ggplot2 ggthemes glue hms lifecycle lubridate miniUI purrr rlang shiny shinyTime stringr tibble tidyr zoo]; }; - edecob = derive2 { name="edecob"; version="1.2.1"; sha256="1lb2df0w4hf2gchdfbyw1ykb8db5bkilgyml1lhdnv209anwjh2n"; depends=[ggplot2 rlang]; }; + edecob = derive2 { name="edecob"; version="1.2.2"; sha256="1k9790xamyw8ksfgvd8gka1f5mghfma6akdj7bqmlqv3yrlpgbxr"; depends=[ggplot2 rlang]; }; edf = derive2 { name="edf"; version="1.0.0"; sha256="14ikm6j0ndxrk7c7lh5mbd2aci46d4j9a30mvcgnxy3kq6046a7b"; depends=[]; }; edfReader = derive2 { name="edfReader"; version="1.2.1"; sha256="076far4fhd6rpa6fwffad4cgchjvar135yblvlrm33s9pd5bf0hn"; depends=[]; }; edfun = derive2 { name="edfun"; version="0.2.0"; sha256="1wxx6bgy03z7c1d6556bbjl1cb49n2vn734fw2d5c1jk0zsh3fmz"; depends=[]; }; edgar = derive2 { name="edgar"; version="2.0.5"; sha256="1rm6ba4rncfsq7ndqdlkwrqqsak1n7ywsrcnxyr6ysnzgqx65y9n"; depends=[httr qdapRegex R_utils stringi stringr tm XML]; }; edgarWebR = derive2 { name="edgarWebR"; version="1.1.0"; sha256="1v9rdj2qdcvzz7g78pa9j6l8d6zjz1q06h09c4547r67bzfz1nxy"; depends=[httr jsonlite xml2]; }; edgeCorr = derive2 { name="edgeCorr"; version="1.0"; sha256="19n67yc58ksin7xydrnfsyyw7fqawm5xli67cz4lv4wb62w6r6ld"; depends=[]; }; - edgebundle = derive2 { name="edgebundle"; version="0.4.0"; sha256="0f6kqyvx52qgm9qzl0vjlh53bdjiwscfjhk9yqvgxf9ih33718hi"; depends=[igraph interp Rcpp reticulate]; }; + edgebundle = derive2 { name="edgebundle"; version="0.4.1"; sha256="196np22ibvj31f5f45gl5ni5byj1z2h4vyxxcqarny2zfk00qg9j"; depends=[igraph interp Rcpp reticulate]; }; edgebundleR = derive2 { name="edgebundleR"; version="0.1.4"; sha256="0pajr95qqppk2m4l7rfi46rll32z8a7lmq0vmb3p8n0aks5ajn1n"; depends=[htmlwidgets igraph rjson shiny]; }; edgedata = derive2 { name="edgedata"; version="0.2.0"; sha256="11sc7x0m00yhn2c4601dpjv3brmf57i8barsl3p7bawcvka8z5lr"; depends=[]; }; edibble = derive2 { name="edibble"; version="0.1.2"; sha256="1a06p6jy7j4ml8q71s6mcpp1qm39vv7nz21ac0y0wssqmicsr5x3"; depends=[AlgDesign cli dae magrittr nestr pillar R6 rlang tibble tidyselect vctrs]; }; @@ -8570,7 +8612,7 @@ in with self; { editData = derive2 { name="editData"; version="0.1.8"; sha256="170i8p264zj716h58bb6pvgh2lnz1w5vplnrcv8vizppi0n1js6l"; depends=[dplyr DT magrittr miniUI openxlsx rio rstudioapi shiny shinyWidgets tibble]; }; editrules = derive2 { name="editrules"; version="2.9.3"; sha256="07j8wj0fk34irqgsz70h2wad3wdjv5xl1cl702vxbr0nvmpw2ngl"; depends=[igraph lpSolveAPI]; }; edl = derive2 { name="edl"; version="1.1"; sha256="19p0qr9lm0kdinh4qnqx7bzxkbvcfpp6mbddwh0hgsgqkbw916cp"; depends=[data_table plotfunctions]; }; - edlibR = derive2 { name="edlibR"; version="1.0.0"; sha256="008wyzmrnzga470p88hg6zxqj6jn5y27vadxk03nx9qx0ap6f97r"; depends=[Rcpp stringr]; }; + edlibR = derive2 { name="edlibR"; version="1.0.1"; sha256="0ibl8zcaf2p2xb3498zbin7g4ipanyxc9m9zkcj43h2r0304xgsk"; depends=[Rcpp stringr]; }; edmcr = derive2 { name="edmcr"; version="0.2.0"; sha256="06ms8zyygkgq3divall8paiiw5blqxfgml8iy339zfyiwfxabw5a"; depends=[igraph lbfgs MASS Matrix nloptr sdpt3r truncnorm vegan]; }; edmdata = derive2 { name="edmdata"; version="1.2.0"; sha256="042imrnn242jzb9wb4ghjganqmx61zjwspqy9qpkxqi9nr7zxr75"; depends=[]; }; edstan = derive2 { name="edstan"; version="1.0.6"; sha256="1gm1rxwywigyfdlcm2yj1m9qjb4s6w7chr1ck7b32x1pdxdl3ns5"; depends=[ggplot2 rstan]; }; @@ -8592,7 +8634,7 @@ in with self; { eff2 = derive2 { name="eff2"; version="1.0.1"; sha256="0872xms2i8k128h3cn2n9dwa4apdyvxhb1h759cmyw63fw4wm8kx"; depends=[igraph pcalg RBGL]; }; effectR = derive2 { name="effectR"; version="1.0.2"; sha256="1icr1sx98x3h8rbky1agdh809arhjqcypyajl7y50yis8a5pkycb"; depends=[ggplot2 reshape2 rmarkdown seqinr shiny viridis]; }; effects = derive2 { name="effects"; version="4.2-2"; sha256="0nlj79am9a1yg737dhfa8dj1kj2hly9pfknmphsbcvlgxqn35vig"; depends=[carData colorspace estimability insight lattice lme4 nnet survey]; }; - effectsize = derive2 { name="effectsize"; version="0.8.1"; sha256="0rc4kkqp45wa5zsgyrg6wfkrz9ynwa7j71hl0swzvcp4wg2lsp06"; depends=[bayestestR datawizard insight parameters performance]; }; + effectsize = derive2 { name="effectsize"; version="0.8.2"; sha256="1ibkvvpkd4md73d53823wnwzk3iqi1k4vr99jkyiiybcn6mv5qkc"; depends=[bayestestR datawizard insight parameters performance]; }; effectsizescr = derive2 { name="effectsizescr"; version="0.1.0"; sha256="0shfjk6r3bz04jakrn5nwgymjx60lk83i0akcx7zqfxp3k8yncs5"; depends=[Kendall]; }; efflog = derive2 { name="efflog"; version="1.0"; sha256="1sfmq7xrr6psa6hwi05m44prjcpixnrl7la03k33n0bksj8r1w6b"; depends=[]; }; effsize = derive2 { name="effsize"; version="0.8.1"; sha256="1m5ch2g77f4ldbxhzp2ls1pga8hq7ggkz1xs8a90h0s09rj0gd7w"; depends=[]; }; @@ -8602,7 +8644,7 @@ in with self; { egg = derive2 { name="egg"; version="0.4.5"; sha256="1fy7srpiavfn8kyrr1m84an7acgwi6ydzrg71m3b0vk7y9ybmj0m"; depends=[ggplot2 gridExtra gtable]; }; eggCounts = derive2 { name="eggCounts"; version="2.3-2"; sha256="1hb7a78db97xz5hm311d60n2kg1wdlrf57vg4ixamqihyrcs5r4v"; depends=[BH boot coda lattice numbers Rcpp RcppEigen RcppParallel rootSolve rstan rstantools StanHeaders]; }; egor = derive2 { name="egor"; version="1.22.5"; sha256="03bsqldkvwfxwk5hy74ilhkkyhpd6sx7x39ayl0ap354gmyfmzgg"; depends=[dplyr purrr rlang srvyr tibble tidygraph tidyr]; }; - eha = derive2 { name="eha"; version="2.10.0"; sha256="03lxrdwf6kkjl6qh21xfj13956wd0b85hcj6grprnjh3hwv73m14"; depends=[survival]; }; + eha = derive2 { name="eha"; version="2.10.1"; sha256="132n988b4wpx5m2bilc9cqgpxf8j8gkhymh3xvbp88am6iy8155f"; depends=[survival]; }; ehaGoF = derive2 { name="ehaGoF"; version="0.1.1"; sha256="15hpzj3ridl6w3pd5z86d88cc88jw09qpqhsdwkar4dby8lgxhi0"; depends=[]; }; ehelp = derive2 { name="ehelp"; version="1.2"; sha256="0264nx4bidrbwhlxx9llarvh4zb3xnzln8km14823q1hclkpm2fq"; depends=[]; }; ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; @@ -8620,9 +8662,9 @@ in with self; { eive = derive2 { name="eive"; version="3.1.0"; sha256="1livknaplgbw0338kz10hgxrwbm05hhggi5h9klfc2gpw62z6hhs"; depends=[Rcpp]; }; eivtools = derive2 { name="eivtools"; version="0.1-8"; sha256="0ynmrql6dv10m7cwba5mzwlbvp6ab53nzqqvk3ihwyiqzmnnmpk4"; depends=[R2jags]; }; eixport = derive2 { name="eixport"; version="0.5.4"; sha256="0q6djpp6x0hzzk2sh36rfgzch3n6v4af9knvwv0fnlh72n2cj0b8"; depends=[cptcity data_table ncdf4 raster rgdal sf sp]; }; - eks = derive2 { name="eks"; version="1.0.1"; sha256="0vl5q4n3jk4zx8wgq5cx6x3yrr8ivbm0ha2z0rsicf7c6ky9pmvj"; depends=[dplyr ggplot2 isoband ks mapsf sf]; }; + eks = derive2 { name="eks"; version="1.0.2"; sha256="101dq01ngixaab7zj09bcy7jyaa27qf9rb3jsz03j1mrapzipnlv"; depends=[dplyr ggplot2 isoband ks mapsf sf]; }; elaborator = derive2 { name="elaborator"; version="1.1"; sha256="1kq3qqqywpzrk1ichsljvfijhsybmj7s0scmswmwi2crqi67gzp8"; depends=[bsplus dendextend dplyr forcats haven purrr RColorBrewer reshape2 rlang seriation shape shiny shinydashboard shinyWidgets tidyr]; }; - elasdics = derive2 { name="elasdics"; version="0.2.0"; sha256="059mcnf8ym8xjibs0lkr7drvwls3qcfivlls10yl7ss4ial324qp"; depends=[numDeriv]; }; + elasdics = derive2 { name="elasdics"; version="1.1.1"; sha256="1zpwkch4h463d1ad681iid668909w74xb0wyfjqshdvznb4pxp5i"; depends=[numDeriv]; }; elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; elastes = derive2 { name="elastes"; version="0.1.6"; sha256="1j28vqiflc6ij2yp9cniqs3vcjm597mrzdjvfg3235r9m6gf5yij"; depends=[elasdics mgcv orthogonalsplinebasis sparseFLMM]; }; elastic = derive2 { name="elastic"; version="1.2.0"; sha256="0k98ziacyxl1pyhyynmswcncqwl0a05sawypncdpdd9xr77nvgi6"; depends=[crul curl jsonlite R6]; }; @@ -8631,6 +8673,7 @@ in with self; { elec = derive2 { name="elec"; version="0.1.2.2"; sha256="1qc2hzbkmxvk4zrmdr935klhxvvdc7rmximqybb5aammd351qh2a"; depends=[]; }; elect = derive2 { name="elect"; version="1.2"; sha256="1hjqhmdklspssa75x8xdhv2narqgw80qh259hyfwfgnvva97w2ja"; depends=[msm nnet]; }; elections = derive2 { name="elections"; version="1.0"; sha256="0ig3pd1dw978g2sg4ynzd3p15nk6hx17pxvbxfi5rm131mjdmjdm"; depends=[]; }; + elections_dtree = derive2 { name="elections.dtree"; version="1.1.0"; sha256="1j0knxi2vv65pizpz8v26az9k422msn8i7d55hyzy8h1q1bbcy8y"; depends=[R6 Rcpp RcppThread Rdpack testthat]; }; electionsBR = derive2 { name="electionsBR"; version="0.3.2"; sha256="05wxzfgh0f3n6w8ah32q2v4f67g6w4qri4dv1linmlax77clv9fn"; depends=[data_table dplyr haven magrittr readr]; }; electivity = derive2 { name="electivity"; version="1.0.2"; sha256="0clxsn9zkpdlq9jgq029ag310ji0hd0l23wfyqh8gkkj0091ip5a"; depends=[]; }; electoral = derive2 { name="electoral"; version="0.1.3"; sha256="0r15ghnblp5f2g9hpw187clfpj1cgplqyn9mhyvlcmz5ql60glsj"; depends=[dplyr ineq tibble]; }; @@ -8653,19 +8696,19 @@ in with self; { elsa = derive2 { name="elsa"; version="1.1-28"; sha256="01sj2a4yhv5m6qj6ih26zw4yzd8s27lll7yp0yysjjrwz79a0fbq"; depends=[raster sp]; }; eltr = derive2 { name="eltr"; version="0.1.0"; sha256="0f4sy2hhsbghasl5xcnqlgxqhb503pl73c5vdkgpcm73smrqbpbv"; depends=[data_table]; }; emIRT = derive2 { name="emIRT"; version="0.0.13"; sha256="1z6yd9m6vggbp42qms2sg0rbxjpg15x9m8gkdz1p3q4aqrc2ncj0"; depends=[pscl Rcpp RcppArmadillo]; }; - emayili = derive2 { name="emayili"; version="0.7.11"; sha256="1x9wjvb314995bi0sv06p62n5x2b0lqdjjdcm2in8gdljnah0vqs"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown rvest stringi stringr tidyr urltools xfun xml2]; }; + emayili = derive2 { name="emayili"; version="0.7.13"; sha256="13ndi1khnsf75xrh04jy9jpqi94rwnwlyp3jp8b8jyyd1pplhxlw"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown rvest stringi stringr tidyr urltools xfun xml2]; }; emba = derive2 { name="emba"; version="0.1.8"; sha256="1bzp1cplr977w87bm0pvabvgai91a3j51pfjn4lc1ncjbr2v6wl0"; depends=[Ckmeans_1d_dp dplyr igraph purrr readr rje stringr tibble tidyr tidyselect usefun visNetwork]; }; embed = derive2 { name="embed"; version="1.0.0"; sha256="1yvw24yi4j1xlbm6w1g49mcp6wqnn69191sys1fr8wsvrag79gfn"; depends=[dplyr generics glue keras lifecycle purrr recipes rlang rsample tensorflow tibble tidyr uwot withr]; }; embryogrowth = derive2 { name="embryogrowth"; version="8.7"; sha256="1fayl1wxpw9903psrjichrbf6rx38d7shnsjpxdwljw67g6pr5g7"; depends=[deSolve HelpersMG numDeriv optimx]; }; emdbook = derive2 { name="emdbook"; version="1.3.12"; sha256="0ls3zxxlwmdv7zn1v9i1y9zc2sn0hbgmyjvsj7zn3ajsw7wwlih6"; depends=[bbmle coda lattice MASS plyr]; }; - emdi = derive2 { name="emdi"; version="2.1.2"; sha256="072izm7rs728zhwa3zf30kklfy3q8xldhw62bc274dwd7axms5yh"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 saeRobust spdep stringr]; }; + emdi = derive2 { name="emdi"; version="2.1.3"; sha256="0s190p6zhsj2yc1xy1px5sk8aqn6q8b26g7zsnpa9rvih9h2667r"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 saeRobust spdep stringr]; }; emdist = derive2 { name="emdist"; version="0.3-2"; sha256="05mv6xhm15b0mq9kzyiblkb14bdqmjrwl64ghdk66il0w8i7p6nh"; depends=[]; }; emg = derive2 { name="emg"; version="1.0.9"; sha256="04sm05xnjns7wcvpk35ywkxy6g0mm84r060mkmzh64wq58c2q06l"; depends=[moments]; }; emhawkes = derive2 { name="emhawkes"; version="0.9.5"; sha256="0b6kjwx2lsz5rj8819n71nvvchjpys90ns5n6gcgfwn5afzfdvql"; depends=[maxLik]; }; emld = derive2 { name="emld"; version="0.5.1"; sha256="0cvnfvzskvpcqzs6fwrpjcqrc6yrfciliy9jj0c9h4iyag0g0b9b"; depends=[jsonld jsonlite xml2 yaml]; }; - emmeans = derive2 { name="emmeans"; version="1.8.2"; sha256="02fj957f67m1ik9n31h1p726hjnlhwlvd1wz93glfrcagm2p6nbq"; depends=[estimability mvtnorm numDeriv xtable]; }; + emmeans = derive2 { name="emmeans"; version="1.8.3"; sha256="004fd6kzky44xixd87q2nl1sn37krmqfas5gsylbc1cbrwnjzxlz"; depends=[estimability mvtnorm numDeriv]; }; emoa = derive2 { name="emoa"; version="0.5-0.1"; sha256="0rkr4d4fyqxmsrlbzar27z97qkw4cl1dkvfnhbdwpgg9fi1cixmz"; depends=[]; }; - emoji = derive2 { name="emoji"; version="0.2.0"; sha256="06bsz0hsaqa2lzqpyqhsfp07p8ri5frvhiza0s8aali7w3cr2szh"; depends=[glue stringr tibble]; }; + emoji = derive2 { name="emoji"; version="15.0"; sha256="1xscypzz17a7nrajnl7isy2nrm9cyr97l0mi9vp0daqvzgyfajba"; depends=[glue stringr tibble]; }; emojifont = derive2 { name="emojifont"; version="0.5.5"; sha256="1hhrwilv36hd9gs1kcl2zsi6519md0h9aixjrm6lfclxvz8r6k1i"; depends=[ggplot2 proto showtext sysfonts]; }; emon = derive2 { name="emon"; version="1.3.2"; sha256="19khjjpyxvzhzihqq15w02l5v5ryyvxlklz1ch2gkmqcpnvyga32"; depends=[MASS mgcv]; }; emov = derive2 { name="emov"; version="0.1.1"; sha256="04w0bjyxvfb4ky573byp7j9b7x4gqycr5pgpnsl6rzag00zsf45a"; depends=[]; }; @@ -8681,7 +8724,7 @@ in with self; { encryptedRmd = derive2 { name="encryptedRmd"; version="0.2.1"; sha256="0agd5lqrmdi50r9fl25njwsvg91nqsvj4h6c639vfhxx7p9y9nfk"; depends=[readr rmarkdown sodium]; }; encryptr = derive2 { name="encryptr"; version="0.1.3"; sha256="01gsimhrb9c7k5d9h5dbvm4h9i7fc9vzi8wgqb5f191ki27fsw9w"; depends=[dplyr knitr openssl purrr readr rlang]; }; endoSwitch = derive2 { name="endoSwitch"; version="1.0.0"; sha256="1cj4skk317ppnayk1ph63vll49vs74fljc25cn1iviwgjq64ly0k"; depends=[data_table maxLik msm]; }; - endogeneity = derive2 { name="endogeneity"; version="2.0.1"; sha256="1a71w8pqi54g4m814r7z7ywd4fkhlnvrxbrb7s5zlfb5r829b69h"; depends=[MASS maxLik pbivnorm statmod]; }; + endogeneity = derive2 { name="endogeneity"; version="2.1.2"; sha256="1dmb3gnkb6nxvcyzh7vhh0ra8164b337ir7higc5d3dmmssn81yy"; depends=[data_table MASS maxLik pbivnorm Rcpp RcppArmadillo statmod]; }; endogenous = derive2 { name="endogenous"; version="1.0"; sha256="079fmfxl9gf080zq5m1ixmgry9dawg2y6ixbfyc5da5jxf3zk9h8"; depends=[mvtnorm]; }; endorse = derive2 { name="endorse"; version="1.6.2"; sha256="16cbqg3z71c36j2zzw3xr09p6kpjwim7610sss1ayjh3xs0isa2l"; depends=[coda]; }; endtoend = derive2 { name="endtoend"; version="2.29"; sha256="0dqzh2blb2h8ngchvfvnzx0gmilvx9ydvzqwfy4d9f58ixybn4d9"; depends=[ggplot2 pastecs]; }; @@ -8691,6 +8734,7 @@ in with self; { enetLTS = derive2 { name="enetLTS"; version="1.1.0"; sha256="1lah9ai9skshz0rq3r1smvy69j443m22h1dihl42gy2568998q4v"; depends=[cvTools ggplot2 glmnet reshape robustbase robustHD]; }; english = derive2 { name="english"; version="1.2-6"; sha256="1g3nmy5p8wj3ix1vp1qmkmy3dyqisrw0md8cjrx4klqkp0wqlms9"; depends=[]; }; engsoccerdata = derive2 { name="engsoccerdata"; version="0.1.5"; sha256="06fdgjgnk4lwshrkd0jad411x5nz9sxlri9fdhxrf2dr2hik4l8q"; depends=[dplyr magrittr tidyr]; }; + enmSdmX = derive2 { name="enmSdmX"; version="1.0.0"; sha256="1j0yz5s7c7sk8sk6scb389py64r6f3fqbxq0a1bi1z4ddzmiaviw"; depends=[boot dismo doParallel foreach gbm ks maxnet mgcv MuMIn omnibus randomForest scales sf terra]; }; enpls = derive2 { name="enpls"; version="6.1"; sha256="12088v9xnj5b3dlakqz1hbzxz4mdai7xi7s2fpx8lj3y3lx7znmb"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; }; enrichR = derive2 { name="enrichR"; version="3.1"; sha256="0ad7jp398prvmm2fym07268qhv40mg67dx55ml4ayqkwxwffr1i9"; depends=[curl ggplot2 httr rjson]; }; enrichwith = derive2 { name="enrichwith"; version="0.3.1"; sha256="05fhx323ani86wdxbjp8dgw4d1iq4kr1887646w072a6iq93bwhm"; depends=[]; }; @@ -8725,7 +8769,7 @@ in with self; { epcc = derive2 { name="epcc"; version="1.4.7"; sha256="0j4cb17gvwsaacmhvm8qp5chr384kl7gj6089gjrc2hqi6kjr0rx"; depends=[cowplot deSolve formattable ggplot2 httr nls2 proto raster readxl rgdal rlang sp]; }; eph = derive2 { name="eph"; version="0.5.1"; sha256="12j8qmscsz381i9fs3slva2wl7pk7zxa38shaj4m595lswsixvi8"; depends=[assertthat attempt curl dplyr expss glue htmltools janitor leaflet magrittr purrr readr readxl rlang rvest stringr tibble tidyr tidyverse xml2 zoo]; }; epiDisplay = derive2 { name="epiDisplay"; version="3.5.0.2"; sha256="0430mwnaa0qamdyvmwkh37ic0kp4hq8mr5nxkc97mhhl7djw0y92"; depends=[foreign MASS nnet survival]; }; - epiR = derive2 { name="epiR"; version="2.0.52"; sha256="1jgbxl787rfqrr9jr7yzsclx1s3lr3ys2w5kg59dj8zglm0csbwj"; depends=[BiasedUrn flextable lubridate officer pander sf survival zoo]; }; + epiR = derive2 { name="epiR"; version="2.0.54"; sha256="0x8h4ry4dx01s0rvihv7qjdyhdgncjip10xi13iac6ra910znzdr"; depends=[BiasedUrn flextable lubridate officer pander sf survival zoo]; }; epibasix = derive2 { name="epibasix"; version="1.5"; sha256="0ivr51x37cbdryli9b4p4iq9v2c90zwmywrwdmg7ryq5vprvvbp0"; depends=[]; }; epicontacts = derive2 { name="epicontacts"; version="1.1.2"; sha256="07vnvfqm9vghmrjy3g1x3mz6qsf09qi04xq2nm9n4cgxjmbr0gia"; depends=[colorspace dplyr igraph threejs visNetwork]; }; epidata = derive2 { name="epidata"; version="0.4.0"; sha256="0v3s1vrf2iqh03rkkwrlz6mhpbsbjxkayrqdx04vrnja4i9ljshk"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr tinytest xml2]; }; @@ -8735,7 +8779,7 @@ in with self; { epigraphdb = derive2 { name="epigraphdb"; version="0.2.3"; sha256="11ja2r024a4sfk6xjhwn2mj4fz2msf6jx85w3cxr2hvp9sl3zgc9"; depends=[glue httr jsonlite magrittr purrr tibble]; }; epikit = derive2 { name="epikit"; version="0.1.2"; sha256="0b9kc7qr7nkafmak60pyj7hln19w4zp33pk5y48qmfsxgarl6pv3"; depends=[binom dplyr forcats glue rlang scales tibble tidyr tidyselect]; }; epimdr = derive2 { name="epimdr"; version="0.6-5"; sha256="1nxdlz7gl9vrha9iw92y0s9dmm101gkz0rsqxqg1rdxanr6hs6sh"; depends=[deSolve polspline shiny]; }; - epimdr2 = derive2 { name="epimdr2"; version="1.0-7"; sha256="1gxbp6vqk5124pi6xq7ga8dd9456b3idq2qm8wviryc1d05dqfih"; depends=[deSolve ggplot2 phaseR plotly polspline shiny]; }; + epimdr2 = derive2 { name="epimdr2"; version="1.0-8"; sha256="02iiam536jfd1wpr3glrksdpx0lqdh4k21ayy7igkv71p4y071i9"; depends=[deSolve ggplot2 phaseR plotly shiny]; }; epinet = derive2 { name="epinet"; version="2.1.8"; sha256="10bgq66n99kkz0nhmsz508aypxk57zk19p5l3xrb28n72k4rfgrf"; depends=[network]; }; epinetr = derive2 { name="epinetr"; version="0.96"; sha256="0jg8pwbxlgrk7mqawsrifk724pi5qn0amh6x2fq54a0hmqdpdjns"; depends=[GA ggplot2 igraph Rcpp RcppAlgos reshape2 vcfR]; }; episcan = derive2 { name="episcan"; version="0.0.1"; sha256="02687f8gpc2czn19lapvazd6mnm8902ay0lhgi3wdrzfhir42m4r"; depends=[]; }; @@ -8745,8 +8789,8 @@ in with self; { epitools = derive2 { name="epitools"; version="0.5-10.1"; sha256="0jqn3pas4lsans50jwakmvpyc7m7x0kxq6dzyckd3vgww56qa65l"; depends=[]; }; epitopR = derive2 { name="epitopR"; version="0.1.2"; sha256="0bqj62jl48pql7dbmq96fgs0pza3krycd9i6fj0sjz7yxg4i46q6"; depends=[Biostrings dplyr fs here httr janitor purrr readr seqinr stringr tibble tidyverse]; }; epitrix = derive2 { name="epitrix"; version="0.2.2"; sha256="1rqpvdky002h6mz636b77l4kd0im16pww62l6vnwh83si1m9pkki"; depends=[distcrete sodium stringi]; }; - epitweetr = derive2 { name="epitweetr"; version="2.0.3"; sha256="0wxzhhx7l0w5g6zihglxhgzibj69pj929zsh54zp5qg1jr00znyj"; depends=[bit64 crul curl dplyr DT emayili future ggplot2 htmltools httpuv httr janitor jsonlite keyring knitr magrittr openxlsx plotly plyr readxl rlang rmarkdown rnaturalearthdata rtweet shiny sp stringr tibble tidytext tidyverse tokenizers xml2 xtable]; }; - eplusr = derive2 { name="eplusr"; version="0.15.2"; sha256="0zcxmgqpc9v50b4dl1ksadrh4g5dpk9f5icv757pr08sp55qkrmv"; depends=[callr checkmate cli crayon data_table hms lubridate processx progress R6 RSQLite stringi units]; }; + epitweetr = derive2 { name="epitweetr"; version="2.2.13"; sha256="0vv4y1c8nfcdv2hmv6vvi5jh6ykrbvna2p2gwpcl9q4j7b4wp9jc"; depends=[bit64 crul curl dplyr DT emayili future ggplot2 htmltools httpuv httr janitor jsonlite keyring knitr lifecycle magrittr openxlsx plotly plyr processx readxl rgdal rlang rmarkdown rnaturalearthdata rtweet shiny sp stringr tibble tidytext tidyverse tokenizers xml2 xtable]; }; + eplusr = derive2 { name="eplusr"; version="0.15.3"; sha256="04qbvawxzily2cd76lahi3nba49c2j4skjvqk8xy2rin7p0w6fxs"; depends=[callr checkmate cli crayon data_table hms lubridate processx progress R6 RSQLite stringi units]; }; eply = derive2 { name="eply"; version="0.1.2"; sha256="0al44pvqf6ls3dh129vlv3g56hk1nbql09rj0qsb04d9kaz9anrp"; depends=[magrittr]; }; epm = derive2 { name="epm"; version="1.1.0"; sha256="0vr1qydafkj0xlm395alpjkck6ahspi89pjk3zp31f2i6cx71hcx"; depends=[ape pbapply Rcpp RcppProgress sf terra viridisLite]; }; epoc = derive2 { name="epoc"; version="0.2.6-1.1"; sha256="1qlj4cl7mh5k52v2ippfs3cish5iadnix5w46p25hjqiriksclna"; depends=[elasticnet irr lassoshooting Matrix survival]; }; @@ -8758,7 +8802,7 @@ in with self; { epubr = derive2 { name="epubr"; version="0.6.3"; sha256="1cpsxx02qcj3brr3ddy8dbnaf6wxf42s9y3kx8fq5ki3pmlwry7g"; depends=[dplyr magrittr tibble tidyr xml2 xslt]; }; epwshiftr = derive2 { name="epwshiftr"; version="0.1.3"; sha256="11vfs2r2fzbdd3r0s8ikafgq9ins06ym73wqxyijz60h75py4ic7"; depends=[checkmate data_table eplusr fst future_apply jsonlite progressr psychrolib rappdirs RNetCDF units]; }; epxToR = derive2 { name="epxToR"; version="0.4-1"; sha256="00m64ham9fd9dsw37ic2m62fy4pvmwfwmjx8cg6n4rwbgq9q49sg"; depends=[httr XML]; }; - eq5d = derive2 { name="eq5d"; version="0.12.0"; sha256="0gf7xs66j6x7yf1g7h1krig4956c2f86q9lcm9zx29dimyrq4yas"; depends=[]; }; + eq5d = derive2 { name="eq5d"; version="0.13.0"; sha256="1l4867x00iz6wq1w7glcpbmsyxy881wpng3hjf3pmr5yb8lhqmxm"; depends=[]; }; equalCovs = derive2 { name="equalCovs"; version="1.0"; sha256="18w7panyd6mhdr3x1iz9fkrw7min22rishs4xhkxgxs3nnyglkrn"; depends=[]; }; equaltestMI = derive2 { name="equaltestMI"; version="0.6.1"; sha256="09wh4907vf54z3g2a1i1j4m5vkaz97jp3qyrmxbg0bbbq0c68ffg"; depends=[lavaan]; }; equatags = derive2 { name="equatags"; version="0.2.0"; sha256="039v1lj8ydw3lji8ycklbprd569f7g0lc11sb2ij262wlr0prm1m"; depends=[katex xml2 xslt]; }; @@ -8769,25 +8813,23 @@ in with self; { equivUMP = derive2 { name="equivUMP"; version="0.1.1"; sha256="05ihbr6dd9qv89ll90ynk4g3d3xy2w5q0m696djfa63f1x92c01w"; depends=[]; }; equivalence = derive2 { name="equivalence"; version="0.7.2"; sha256="170l5gnk0dkjkfsx7qyrw56ircwsjzz9cvhakgyrqh7bj5734i79"; depends=[boot lattice PairedData]; }; equivalenceTest = derive2 { name="equivalenceTest"; version="0.0.1.1"; sha256="1lr1qc4mv8f9hwqidj1rwhxqm1fb8cf1hnb1k32xpdqwzsxbfa47"; depends=[cubature polynom Rdpack rootSolve]; }; - era = derive2 { name="era"; version="0.4.0"; sha256="1r726zcaayg6chh1466z9q4y3vd1z5hbz3kvqbfp6dqj7dx8qhgw"; depends=[pillar rlang vctrs]; }; + era = derive2 { name="era"; version="0.4.1"; sha256="10hrbdxdvfgz8namczzfwwdhzwf5gsfv6jp9ikiasmjdlyn9jpps"; depends=[pillar rlang vctrs]; }; erah = derive2 { name="erah"; version="1.1.2"; sha256="0dyjb2ja5199z8is11in11a95l2dbhaa2qj42pikh0ydk47qhd6v"; depends=[igraph ncdf4 nnls quantreg Rcpp signal XML]; }; ercv = derive2 { name="ercv"; version="1.0.1"; sha256="0rs4yhm9sjnqkrgqqy6b8wj9fgk910hxc8d7zi4qwql0v1gid27l"; depends=[]; }; erer = derive2 { name="erer"; version="3.1"; sha256="03pdq3p5c5f20959hgk5q2cx5x10bpgf0qg4z1nvsf31vc5ni77v"; depends=[lmtest systemfit tseries urca]; }; ergMargins = derive2 { name="ergMargins"; version="0.1.3"; sha256="0liq64qjd3b0v5pcsvfmvmv7dr0ak4ld2mbin8w2wcdnvpfajjy5"; depends=[btergm ergm Matrix network numDeriv sna statnet_common]; }; - ergm = derive2 { name="ergm"; version="4.2.3"; sha256="124jmrjqwiia542dn33f15r4phvadhfch4rpxdr5hi58sirm7l9m"; depends=[coda knitr lpSolveAPI magrittr MASS Matrix memoise network purrr rlang rle robustbase statnet_common stringr tibble trust]; }; + ergm = derive2 { name="ergm"; version="4.3.2"; sha256="0dghylkwy7acwjpydkbxgfp4sfs9gcgl9l038rm0393cbyfs1phq"; depends=[coda knitr lpSolveAPI magrittr MASS Matrix memoise network purrr rlang rle robustbase statnet_common stringr tibble trust]; }; ergm_count = derive2 { name="ergm.count"; version="4.1.1"; sha256="0cj9jdxxpkgvs658nxxndd9pbxb7l52vzhipkjiimd6q99hr6s24"; depends=[ergm network statnet_common]; }; ergm_ego = derive2 { name="ergm.ego"; version="1.0.1"; sha256="153xdry9y2wyqkq2hacy3gh4h6jwwyn0p0dakxmrrpfsa1my5h9f"; depends=[dplyr egor ergm network purrr RColorBrewer statnet_common survey tibble]; }; ergm_rank = derive2 { name="ergm.rank"; version="4.1.0"; sha256="1ivwqlyx48smm9dmam9z0x6yqhmy1ypmmhzfhs5j3pq5vfwfc87c"; depends=[ergm network statnet_common]; }; - ergmclust = derive2 { name="ergmclust"; version="1.0.0"; sha256="18vx02vr2wi0gw09g4hxb8glf38y06v4a0c6q666qv8bgcb0pgkw"; depends=[igraph lda MASS quadprog Rcpp RcppArmadillo viridis]; }; ergmharris = derive2 { name="ergmharris"; version="1.0"; sha256="1bfijhsljlykb94wi25lbpv35zkmgqpmgzmxcq98gjvzbn5j9pdq"; depends=[]; }; - ergmito = derive2 { name="ergmito"; version="0.3-0"; sha256="0ajfx8g31p0lf0ajrgssb9lkhs1bxkz19z3q99l500znlivc2fy2"; depends=[ergm MASS network Rcpp RcppArmadillo texreg]; }; erify = derive2 { name="erify"; version="0.4.0"; sha256="014q4crfa92i4fb4mrbl68ai0l8asjwwnv3l2m11gfnny41p4bks"; depends=[glue]; }; erp_easy = derive2 { name="erp.easy"; version="1.1.0"; sha256="193n45w0rq3cy0nmxvv0h6s3yr8kfjlg90nd4dnqlsq85zlsizij"; depends=[gtools plyr signal]; }; err = derive2 { name="err"; version="0.2.0"; sha256="1915b0vmqdd8whwdrqjphld1jaxawh5b7di6wf7q3sx779lblsrs"; depends=[]; }; errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; }; errorist = derive2 { name="errorist"; version="0.1.0"; sha256="0zq5h2wffn9d3f3blzh736478k91smlvz5hxy55hcjqffpxcp4ah"; depends=[searcher]; }; errorlocate = derive2 { name="errorlocate"; version="1.1"; sha256="1p9a5nc0ckbdapahf5nkxnsgwvqh2llv3kc2wzwawn131rdaj1qi"; depends=[lpSolveAPI validate]; }; - errors = derive2 { name="errors"; version="0.3.6"; sha256="1404314glbqnicrwnfzmxxf7l97pgrb2gjkgkwn100p0sj83kjdg"; depends=[]; }; + errors = derive2 { name="errors"; version="0.4.0"; sha256="15hmsyfcsjy33601a7v2r7sfk2kxbm4a8xwkgjppmf84vhpqplbx"; depends=[]; }; errum = derive2 { name="errum"; version="0.0.3"; sha256="18frrfnhnmg4fjlpfwj8aklzfwafpwqvagm0aschkqc8mz6wnjbz"; depends=[Rcpp RcppArmadillo]; }; es_dif = derive2 { name="es.dif"; version="1.0.2"; sha256="1swxg8mdp9jj9f0x0cawhhbx8gmmpsgqlbifx2v04a2vkgdkigqf"; depends=[]; }; esDesign = derive2 { name="esDesign"; version="1.0.3"; sha256="0lnz40d8s9pmxccsbd9g80n0k454xgicjfdpbfrq7rnyb4pdk9l2"; depends=[]; }; @@ -8802,7 +8844,7 @@ in with self; { eshrink = derive2 { name="eshrink"; version="0.1.2"; sha256="0min4j1dyd08i0fyn9a4iasjlhq08bn74bjz8vj1gq9l114v795k"; depends=[glmnet MASS]; }; esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; esmprep = derive2 { name="esmprep"; version="0.2.0"; sha256="076sm26mkkvig2g04k32z2dlp2h9gnqgzckhirl4pqm01siknl61"; depends=[lubridate]; }; - espadon = derive2 { name="espadon"; version="1.1.1"; sha256="0blawgnw2zg3pyrzzfsf5iriqml0z5fhcws2pnah2b3pzl336q5w"; depends=[colorspace DT igraph js mathjaxr Matrix misc3d openxlsx progress qs Rcpp Rdpack rgl Rvcg shiny shinyWidgets sp]; }; + espadon = derive2 { name="espadon"; version="1.2.0"; sha256="06lri62bpv4hspvwwxq5r1qypj63jw9kshz4wplmywazf8bpif61"; depends=[colorspace DT igraph js mathjaxr Matrix misc3d openxlsx progress qs Rcpp Rdpack rgl Rvcg shiny shinyWidgets sp]; }; esquisse = derive2 { name="esquisse"; version="1.1.2"; sha256="180kdcqf93rkfzmjlysi53646ypkqi1r383n8p9jmj6xh9aag8rl"; depends=[datamods ggplot2 htmltools jsonlite phosphoricons rlang rstudioapi scales shiny shinyWidgets]; }; esreg = derive2 { name="esreg"; version="0.6.0"; sha256="0q8na05dq1gacpijv005bzan8skyzzhj8z00fzx46d27xdz7qisw"; depends=[Formula quantreg Rcpp RcppArmadillo]; }; ess = derive2 { name="ess"; version="1.1.2"; sha256="1cmw20nn39ssyqiyn50w0ws28mq4cd26yhzr7mv97haaqjjjkv5h"; depends=[igraph Rcpp]; }; @@ -8812,11 +8854,13 @@ in with self; { estadistica = derive2 { name="estadistica"; version="0.2.2"; sha256="05ad1wfy4682icprp7jgx09p8azjnk8wlxhpzjdkm6mz0ix7zqp5"; depends=[data_table dplyr forecast ggplot2 gridExtra knitr plotly rio shiny shinydashboard tidyr tidyverse]; }; estatapi = derive2 { name="estatapi"; version="0.4.0"; sha256="0wp5w9w0b832fnl7kchjqmychnf5896q50grw8hwdc1km14dfzkg"; depends=[dplyr httr purrr readr rlang tibble]; }; estimability = derive2 { name="estimability"; version="1.4.1"; sha256="090i1xwdp4fwj8jr8nk13w49516lfkk5mq1w7l0lff9g8lgaynn6"; depends=[]; }; + estimateW = derive2 { name="estimateW"; version="0.0.1"; sha256="0fgbyfnxxs6kp9p17ljvj72q5vd4xn7kwh4zbmzjx45cdq101bjv"; depends=[Matrix matrixcalc plot_matrix R6]; }; estimatr = derive2 { name="estimatr"; version="1.0.0"; sha256="1px9j7nlxgx5g7fi57hpx0fsjxhkwjcxbkic0lqf1m3pgxxcxj59"; depends=[Formula generics Rcpp RcppEigen rlang]; }; estimraw = derive2 { name="estimraw"; version="1.0.0"; sha256="0z591mblbzc3qv9pyv8zn0r5r3d8f1l02sxdc649gl1lb40kalz0"; depends=[dplyr]; }; estmeansd = derive2 { name="estmeansd"; version="1.0.0"; sha256="1jmi78gmddhqpg3n7jywkbsq8amxa641s8rhzzg6jmmh4w09dg9s"; depends=[metaBLUE]; }; estprod = derive2 { name="estprod"; version="1.2"; sha256="0pnpg8w6i1dmkcn6afj2jsm5mzvbxka80np1bldcxgmylrp5s35p"; depends=[boot Formula gmm lazyeval minpack_lm]; }; esvis = derive2 { name="esvis"; version="0.3.1"; sha256="0bb91khnrn8v3d6hbbin72032w7w8p0jchbr0bzwyfq5f6l4hwka"; depends=[dplyr ggplot2 Hmisc magrittr purrr rlang sfsmisc tibble tidyr]; }; + et_nwfva = derive2 { name="et.nwfva"; version="0.1.1"; sha256="01jhy5043axgmv51ri2k3gl1shvsh569h9xy4y1ya1qjpdlbv0ky"; depends=[]; }; etable = derive2 { name="etable"; version="1.3.1"; sha256="17dga1hz29jjdclhhwn1hrvlkdfbcbqmk233vc00s59pbmgsav06"; depends=[Hmisc]; }; etasFLP = derive2 { name="etasFLP"; version="2.2.0"; sha256="1030l3g6hghgcmji934g5pc01p2hld09mv3zna58xzzb4wsmz167"; depends=[fields mapdata maps]; }; ether = derive2 { name="ether"; version="0.1.6"; sha256="1f3phh5vdfvlxqrpzsn6ysz0q3mbhr862fzsd3sp8m8qhry86cbx"; depends=[dplyr httr jsonlite Rmpfr]; }; @@ -8830,8 +8874,8 @@ in with self; { etrunct = derive2 { name="etrunct"; version="0.1"; sha256="0ayazgyqlc8jcqr03cwfmfhm4pck6xri1r6vkgqy4arqkrrnrcqr"; depends=[]; }; eudract = derive2 { name="eudract"; version="0.10.1"; sha256="0qznnfflmxgx6ic5lfw0vcv1jm6hs7g3srly90vj70adjcb49sbd"; depends=[dplyr httr magrittr tidyr xml2 xslt]; }; eulerian = derive2 { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[graph]; }; - eulerr = derive2 { name="eulerr"; version="6.1.1"; sha256="0lldp2319qd08y87f862gx8a77rvikcnkmdl9xgx4glynfs3hk19"; depends=[GenSA polyclip polylabelr Rcpp RcppArmadillo]; }; - eurlex = derive2 { name="eurlex"; version="0.4.2"; sha256="0xyxdn0qqp7irwj0g6fpm16c1qr88l7bq0s3bjb8anrk0fisfghp"; depends=[antiword curl dplyr httr magrittr pdftools readr rlang rvest stringr tidyr xml2]; }; + eulerr = derive2 { name="eulerr"; version="7.0.0"; sha256="16a84a2xgv1iqsir0hzn6qclljni4f3prpycb7qpp06vrd0yn8lw"; depends=[GenSA polyclip polylabelr Rcpp RcppArmadillo]; }; + eurlex = derive2 { name="eurlex"; version="0.4.4"; sha256="0ncbzixrr0fxjgyhwjwa2y8aqpq7c9m9v3g733n2zg88jpkqqr0q"; depends=[antiword curl dplyr httr magrittr pdftools readr rlang rvest stringr tidyr xml2]; }; eurocordexr = derive2 { name="eurocordexr"; version="0.2.2"; sha256="081p9qs09xif2cck0gmmqgzaly1r2p77kla2nhcvjgxgdylbsdkd"; depends=[data_table fs lubridate magrittr ncdf4 ncdf4_helpers PCICt]; }; eurodata = derive2 { name="eurodata"; version="1.5.0"; sha256="00h8pnfvg5bq7174pzj7773xcm2h2gw88kjh9skxjs8zhrqafipk"; depends=[data_table magrittr memoise R_utils Rcpp stringr xml2 xtable]; }; europeanaR = derive2 { name="europeanaR"; version="0.1.0"; sha256="11cr8n64yv50zwib9wkvk1j43p9a1cmxmzznxykczv43l193kjg7"; depends=[data_table httr jsonlite magrittr Rdpack]; }; @@ -8842,7 +8886,7 @@ in with self; { evabic = derive2 { name="evabic"; version="0.1.1"; sha256="0f34shsacf9lyb2hlp2f0nhqy2ihy1zqg52npx8ap2li0s4y0x24"; depends=[]; }; evalITR = derive2 { name="evalITR"; version="0.3.0"; sha256="16xx6blq51hck04zxvya4iyv9d6i1zkrqyfg10vc0kc3626vnlrn"; depends=[dplyr MASS Matrix quadprog]; }; evalR = derive2 { name="evalR"; version="0.0.1"; sha256="0gb9bi9kfpqv0asbrcz2kdf1grxbjipdq97jmlgbzr5rn9jski01"; depends=[Rcpp]; }; - evaluate = derive2 { name="evaluate"; version="0.17"; sha256="0qx9dgwcz0xmf4k8hy45p50dhb3nldhmhmg5y0d92rxr9k4l7is9"; depends=[]; }; + evaluate = derive2 { name="evaluate"; version="0.18"; sha256="0dmznan8zajzb5f31yabcgpkinlqczz59i1rg9f6sa5cjzffqkkz"; depends=[]; }; evclass = derive2 { name="evclass"; version="1.1.1"; sha256="00lbhcgswpv0amz0mb93kx9p91sf0d7zvxfw9i8x1zpmpfd6nhcj"; depends=[FNN]; }; evclust = derive2 { name="evclust"; version="2.0.2"; sha256="107x61vmkfmy3bmcaywz96qj35bmz4nydd0zn9amm2xnbb37lg31"; depends=[FNN limSolve Matrix mclust plyr quadprog R_utils]; }; evd = derive2 { name="evd"; version="2.3-6.1"; sha256="0wc95hfj0gwkyghipdrhwd3s6q2agh9x2wy6y7dr6mjw7wnmjb36"; depends=[]; }; @@ -8861,19 +8905,20 @@ in with self; { evir = derive2 { name="evir"; version="1.7-4"; sha256="1h7a7z7v5k33y5hsdfczsri3vpbwspfgazhv4saknv2h11rgfpki"; depends=[]; }; evmix = derive2 { name="evmix"; version="2.12"; sha256="02rabc9snci00s1x7h0svfr66lmw1wjcdg0149wc52mnccsdaivf"; depends=[gsl MASS SparseM]; }; evobiR = derive2 { name="evobiR"; version="1.1"; sha256="0502xj1gv2g943vfqyllz4sr5z4mixf5vqlqi2v96mymnv9iwsr8"; depends=[ape geiger phytools seqinr shiny]; }; - evolqg = derive2 { name="evolqg"; version="0.2-9"; sha256="1y1pq2hdilqkj6hk02km9aaaynz1calcw00r5k1rxlc4wfq1wx70"; depends=[ape coda expm ggplot2 igraph Matrix MCMCpack mvtnorm plyr Rcpp RcppArmadillo reshape2 vegan]; }; evolvability = derive2 { name="evolvability"; version="2.0.0"; sha256="0l81d48zvvnbxlx1mj4qwga1kdzk05pzdvsp4ghi93pzzynfqn9s"; depends=[ape coda lme4 Matrix]; }; evoper = derive2 { name="evoper"; version="0.5.0"; sha256="064fcpd04ws8v6sl0bakiw34jmmfpg1w5pkq94y2gh1c576x4vwz"; depends=[boot data_table deSolve futile_logger ggplot2 plot3D plyr reshape RNetLogo rrepast]; }; evtclass = derive2 { name="evtclass"; version="1.0"; sha256="1ny43sry257cxlg56f0lj1szv9ci3ymskj6l5sn43l5a2pq62g4l"; depends=[evd fitdistrplus RANN]; }; evtree = derive2 { name="evtree"; version="1.0-8"; sha256="1dmzbsyrg8wwzzqcxzqmgm7yai37lh9lkjhizhr2h0k03s5xdv1k"; depends=[partykit]; }; ewoc = derive2 { name="ewoc"; version="0.3.0"; sha256="0r8b5vq0qzp3f0dasxmrngldqlymca90sj019rzs1a0qf28wlgbr"; depends=[coda doParallel doRNG foreach Formula ggplot2 rjags]; }; exCon = derive2 { name="exCon"; version="0.2.5"; sha256="0gqnv01dw4ncf3x3p74pc6f14a1ixq7icl2p18hsmvxdqqg7kgy7"; depends=[jsonlite]; }; + exDE = derive2 { name="exDE"; version="1.0.0"; sha256="15z1gdbpnps9idlw8bw3n0wsayjpvv0f5mb8hihi0kvbys8q4sfa"; depends=[deSolve expm MASS]; }; exact_n = derive2 { name="exact.n"; version="1.1.0"; sha256="0sjiv55455274d2gfhkkdwbpq15wka947ajn9gyypfyc4fmzbqcn"; depends=[]; }; exact2x2 = derive2 { name="exact2x2"; version="1.6.6"; sha256="1c7lsl2zvnighzylp7z3w74rl7p8zfg0fphw5fxv2i0m8sslzq73"; depends=[exactci ssanv]; }; + exactLTRE = derive2 { name="exactLTRE"; version="0.1.0"; sha256="0fhzymvsmp1hcq32nwka745jhbf51iyb9hp6ix9rm88kyclcwhrl"; depends=[matrixcalc popdemo]; }; exactRankTests = derive2 { name="exactRankTests"; version="0.8-35"; sha256="1qv9i57chhz8xiv0j8r47rbigyqs72fa7ssz99inyc0s8gzskd3y"; depends=[]; }; exactci = derive2 { name="exactci"; version="1.4-2"; sha256="08phqmpj7f6mjbwfnykqmfmg7g9h6ksj3hyryn79d7kwxyh994i7"; depends=[ssanv testthat]; }; - exactextractr = derive2 { name="exactextractr"; version="0.9.0"; sha256="13di9s0lv9kdv2p3hp9ksrr0rh98z6m998pj5a1xq9zl6iakankh"; depends=[raster Rcpp sf]; }; - exampletestr = derive2 { name="exampletestr"; version="1.6.5"; sha256="144rfi83g79xhw3v5vn4qfqmxixy9pk2ir8dm42qk0jhd9v2awng"; depends=[checkmate fs magrittr ore purrr readr rlang roxygen2 rstudioapi strex stringr styler usethis withr]; }; + exactextractr = derive2 { name="exactextractr"; version="0.9.1"; sha256="18glacc1v0kj65g6fbqnhvgg83sr334chdfll7nhjnx44my3dkzh"; depends=[raster Rcpp sf]; }; + exampletestr = derive2 { name="exampletestr"; version="1.7.0"; sha256="0853p0w4qcd76h964bxvmlnzbhgxp7cv057lczgw0y4h73hk85fq"; depends=[checkmate fs magrittr purrr readr rlang roxygen2 rstudioapi strex stringr styler usethis withr]; }; exams = derive2 { name="exams"; version="2.4-0"; sha256="0g2m51i7lf62hy4v9ns3l7bv3jh367fwi6hgz94iw7n8pjhkh47v"; depends=[base64enc knitr rmarkdown]; }; exams_mylearn = derive2 { name="exams.mylearn"; version="1.4"; sha256="0cswbynd1acrvdwhgg3vlgl80v0qk22kg2hacbc6y08s4367srly"; depends=[exams glue pkgbuild stringi stringr xml2]; }; exams2learnr = derive2 { name="exams2learnr"; version="0.1-0"; sha256="0laimld71p3w2r01d0xm7ly7brvahhagmx4972amv4xvn66y3xv4"; depends=[exams knitr learnr rmarkdown]; }; @@ -8889,30 +8934,31 @@ in with self; { exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; exifr = derive2 { name="exifr"; version="0.3.2"; sha256="0iqm513h7951q3hg8maf2hbprqmsm93cb3mbg3g91qawpx77494c"; depends=[curl jsonlite plyr rappdirs tibble]; }; exiftoolr = derive2 { name="exiftoolr"; version="0.2.0"; sha256="17s4rk3fn4lh1hqnayya32rcb28j59hpq4rqfb8w6m96zxx8l44n"; depends=[backports curl data_table jsonlite zip]; }; - exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; }; expDB = derive2 { name="expDB"; version="0.1.0"; sha256="0h7f9127vrd45lg7k0bkgq3cghxwv2z11p4pak20pakk13g82hj4"; depends=[DBI dplyr lubridate magrittr png readxl reshape2 rlang RSQLite stringr tibble tidyr tidyverse weaana]; }; expSBM = derive2 { name="expSBM"; version="1.3.5"; sha256="0k8nkwqrcmmhv0x8a2np1rm5cyc9glyvndwdbnp03v0wrg8121sw"; depends=[blockmodels gtools mclust Rcpp RcppArmadillo]; }; expandFunctions = derive2 { name="expandFunctions"; version="0.1.0"; sha256="0661l4ab0xhjidmh8ycvymhp3wgxafm7nd1c59bfpxhyhz76n1p4"; depends=[glmnet orthopolynom plyr polynom]; }; expectreg = derive2 { name="expectreg"; version="0.52"; sha256="1cb2k3ndzxw9sd9znmmd0f2pfpa1lvvvm9vvj3z44b4vcb2lf9vl"; depends=[BayesX colorspace fields Matrix mboost quadprog Rcpp RcppEigen]; }; experDesign = derive2 { name="experDesign"; version="0.1.0"; sha256="1v2j3jyxyzwkzc3y5n6pzd31yigkfwcmf12df3104m3kn86iq81r"; depends=[]; }; + experiences = derive2 { name="experiences"; version="0.1.1"; sha256="1fqcq9jaw79nafm4qqbwm9qg2xlscjcyx3rmk7677xxrz7kywn94"; depends=[cli dplyr huxtable magrittr scales stringr tibble]; }; experiment = derive2 { name="experiment"; version="1.2.1"; sha256="0lzxwpcz7m4wngfw0wyazkhh4icn9zjd8jmgf6ym2zzk3xc4dji1"; depends=[boot MASS]; }; experimentr = derive2 { name="experimentr"; version="0.1.0"; sha256="0ji2031r108rzna00zhsh70kfcnhcscz0an0jv0vvj00hrakl0yr"; depends=[]; }; expint = derive2 { name="expint"; version="0.1-8"; sha256="1cn6c84pqf8bgk109qm4znn186h6s6cpll3d11cw144h0vh4yr8j"; depends=[]; }; - expirest = derive2 { name="expirest"; version="0.1.3"; sha256="0bjwia1fvavids4yfac085wqg6sraxs30vwmk6jbls5r0ki1ijva"; depends=[ggplot2]; }; + expirest = derive2 { name="expirest"; version="0.1.5"; sha256="08gwy1fikj7kg7h6fc7w15621jc0prdqdhzx14ad6dvdi5rd33gv"; depends=[ggplot2 rlang]; }; explor = derive2 { name="explor"; version="0.3.9"; sha256="0sfpw9lgpr9hyn93jwxhijbfqnj466wc5ilszki2r7ziik3nb79i"; depends=[dplyr DT formatR ggplot2 highr RColorBrewer scatterD3 shiny tidyr]; }; exploratory = derive2 { name="exploratory"; version="0.3.13"; sha256="164ykw514gfj185ckg3p8jfn7y5al12iab34fqyrkrqpj84gf1qd"; depends=[data_table DT ggplot2 ggridges lemon lm_beta mediation remotes shiny shinydashboard weights]; }; - explore = derive2 { name="explore"; version="0.9.0"; sha256="0hi4aqjgj66v69ip821jd7l7c8viq39g9mp9jhxy8h79cf6k65br"; depends=[assertthat broom dplyr DT forcats ggplot2 gridExtra magrittr MASS rlang rmarkdown rpart rpart_plot shiny stringr tibble tidyr]; }; + explore = derive2 { name="explore"; version="1.0.0"; sha256="0ihg4yd9k979aidjmcnvy65zlwqpyssw1d7p8i0d8z7aim7g2kqd"; depends=[assertthat broom dplyr DT forcats ggplot2 gridExtra magrittr MASS rlang rmarkdown rpart rpart_plot shiny stringr tibble tidyr]; }; exploreR = derive2 { name="exploreR"; version="0.1"; sha256="154j5wiiy9vqdvh1qvdkz2fdp2phcygbbjl7nj5nkn07xwxbsc77"; depends=[ggplot2]; }; expm = derive2 { name="expm"; version="0.999-6"; sha256="1p5dapwv8ycxaysgi6imnby04i4kh1c5a2czqa4wygz0s8pr2y9c"; depends=[Matrix]; }; + export = derive2 { name="export"; version="0.3.0"; sha256="1b238d6aa1m2pcg7vdjbrvjj748j3fim5zvhng7lgkag2rzjqa56"; depends=[broom devEMF flextable officer openxlsx rgl rvg stargazer xml2 xtable]; }; expp = derive2 { name="expp"; version="1.2.5"; sha256="0hb4392biyy85gs7af4p9m7r51ijmqr7wp7c7b0i7lzdf1bnd7fz"; depends=[deldir rgeos sp spatstat_geom spdep]; }; expperm = derive2 { name="expperm"; version="1.6"; sha256="0cybna0q3qn3slyc4lv5rby4pr0xkwq0h6n7hl1zhsaqv4c2zc5b"; depends=[Rcpp]; }; expsmooth = derive2 { name="expsmooth"; version="2.3"; sha256="0alqg777g7zzbjbg86f00p2jzzlp4zyswpbif7ndd0zr8xis6zdc"; depends=[forecast]; }; - expss = derive2 { name="expss"; version="0.11.2"; sha256="12hg75k1mmbkf9rcdz9c13c36cjh7x2zj0mpwh3kwk6jv63cqn1c"; depends=[data_table htmlTable maditr matrixStats]; }; - expstudy = derive2 { name="expstudy"; version="1.0.2"; sha256="1c83lad5pva1wsbgmdcbl10c3xnkmiklpjk6hiik0p79n8vqv2mm"; depends=[assertthat checkmate data_table dplyr dtplyr glue lifecycle magrittr pillar purrr rlang stringr tibble tidyr tidyselect]; }; + expss = derive2 { name="expss"; version="0.11.4"; sha256="1c7a50dv265872ng891jcipa5anrq5c5xpx81rix85l95mzwfzix"; depends=[data_table htmlTable maditr matrixStats]; }; + expstudy = derive2 { name="expstudy"; version="1.0.3"; sha256="0xvrwhgfwddgn943shpmh8ifsa7hyandrpgp1yg9n9iqwmmddg77"; depends=[assertthat checkmate data_table dplyr dtplyr glue lifecycle magrittr pillar purrr rlang stringr tibble tidyr tidyselect]; }; exreport = derive2 { name="exreport"; version="0.4.1"; sha256="0vj60rchhrc5q6x1kv7b95fcmh2a5qynli2w54rrrw1nx54xm8c2"; depends=[ggplot2 reshape2]; }; extRC = derive2 { name="extRC"; version="1.2"; sha256="0mkvic9nr0asd0g04nlfiy81d7am9a3i65ibxyvbdwsxnf92p8ya"; depends=[MASS]; }; extRatum = derive2 { name="extRatum"; version="1.0.4"; sha256="1w4xfr7ps565xczmn6pr7g4551rj28df1j0y9vckvxdbb4dk1p11"; depends=[dplyr sf tidyr]; }; - extRemes = derive2 { name="extRemes"; version="2.1-2"; sha256="19q560prq02h3bwk01jb68693qb5bhsv8wiqhia7v5knm34qv8x7"; depends=[distillery Lmoments]; }; + extRemes = derive2 { name="extRemes"; version="2.1-3"; sha256="0h1w177vz3z58vbqrfbiqapf9z2qsd7gcbv8fnbyn0i5akfz1k71"; depends=[distillery Lmoments]; }; extdplyr = derive2 { name="extdplyr"; version="0.1.5"; sha256="1zbnp0h0lv1dr40dhdw6ii8rmc5lxcq4wjsm83xpd3y8x9xpglnl"; depends=[dplyr lazyeval tidyr]; }; extendedFamily = derive2 { name="extendedFamily"; version="0.2.1"; sha256="0h1wply55cjclhblxmb4pd9qmiwk8vha7vk0i00ab46n7dc1yqa0"; depends=[assertthat numDeriv]; }; exteriorMatch = derive2 { name="exteriorMatch"; version="1.0.0"; sha256="0cdfj1n502iws1g03rk7x0c18zyazqf3vci9kjm6lrv4j2qwrvip"; depends=[]; }; @@ -8922,13 +8968,13 @@ in with self; { extrafontdb = derive2 { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; }; extrafrail = derive2 { name="extrafrail"; version="1.2"; sha256="1yzbpzfqf1l0530m1qyw0c781rvyj3czfv5jxg0s4ss4srj2kzzb"; depends=[expint pracma survival]; }; extraoperators = derive2 { name="extraoperators"; version="0.1.1"; sha256="1clyp97ssmdq9ggbv3w5yskx7khnlm4ji7ym3k3b4bx1pazcw4q4"; depends=[]; }; - extras = derive2 { name="extras"; version="0.4.0"; sha256="0c2r5b3fhwv2spvakxilz46pdv8q9b0s0sii2gl8zm2cv83zmsyj"; depends=[chk lifecycle]; }; + extras = derive2 { name="extras"; version="0.5.0"; sha256="1y9i2vxp06yy0p26n8l4ky9i5zwdhdny1nw62lk6h3yk4rn63qca"; depends=[chk lifecycle]; }; extraterrestrial = derive2 { name="extraterrestrial"; version="0.1.0"; sha256="0clss1zwgw1497n2xif82kplr1w1ajs4xs02041ads3l8craj7y1"; depends=[]; }; extremeIndex = derive2 { name="extremeIndex"; version="0.0.3"; sha256="19zkqabk7n5v4nnwlkxbrym4rf1ljbpblggiqd9s9f6ylir417pv"; depends=[boot evd evir gmm]; }; - extremeStat = derive2 { name="extremeStat"; version="1.5.2"; sha256="1cq1wfjdq3kmcaygyd158g660hr3b7zbl7hy6sn7gcz83fycihnq"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; }; + extremeStat = derive2 { name="extremeStat"; version="1.5.3"; sha256="17l7ccnyg09dg9a3204b51axmj46gghmlqkd4kq6fsldmwic1zv6"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; }; extremefit = derive2 { name="extremefit"; version="1.0.2"; sha256="07gx6dp0kz4y1jn90hsfvkhn6k7i4flh7ghdz9v5nwda86f55q2s"; depends=[]; }; extremevalues = derive2 { name="extremevalues"; version="2.3.3"; sha256="0ijha5zzmv3qr0czm4qxk28kg3ql5jh3nk9fr0flzl8d9n3z0jx6"; depends=[gWidgets2 gWidgets2tcltk]; }; - extremis = derive2 { name="extremis"; version="1.2"; sha256="1gvizxv1ay788a21qjslrmi7qdbr8s2ryibyri6sp7xdkaqiixsn"; depends=[emplik evd MASS]; }; + extremis = derive2 { name="extremis"; version="1.2.1"; sha256="11y3cb5z6vsrpdffdr44afz3is0ikxvpb81a8pwc7p8q63rxq4a2"; depends=[emplik evd MASS]; }; extremogram = derive2 { name="extremogram"; version="1.0.2"; sha256="13k869v6j4ik9p8w0gf1absvb45xbd3nnwghsz0ix7y0vyvry358"; depends=[boot MASS]; }; exuber = derive2 { name="exuber"; version="1.0.0"; sha256="05p6izwcw3qr6rl9f0qj96g4inn1hlacy7mmnr1mh0vz9x4b2mig"; depends=[cli doRNG doSNOW dplyr foreach generics ggplot2 glue lubridate progress purrr Rcpp RcppArmadillo rlang tibble tidyr]; }; eye = derive2 { name="eye"; version="1.2.1"; sha256="0la9hlpryqczi6v6pyjx2hdhhdgm3aijs45v1nj76a867zmf77k9"; depends=[cli dplyr english lubridate magrittr pillar purrr rlang stringr tibble tidyr tidyselect]; }; @@ -8947,7 +8993,7 @@ in with self; { ezglm = derive2 { name="ezglm"; version="1.0"; sha256="0x7ffk3ipzbdr9ddqzv0skmpj5zwazkabibhs74faxnld7pcxhps"; depends=[]; }; ezknitr = derive2 { name="ezknitr"; version="0.6"; sha256="060a2175zh1nhzmqgz1mpj2c6721n5w5bv695jj4rbl2s2b2h4qj"; depends=[knitr markdown R_utils]; }; ezmmek = derive2 { name="ezmmek"; version="0.2.4"; sha256="0x62nzs1kayv95a6ldav732v79gahrri2khy1w678rxbzfx5wkqy"; depends=[assertable dplyr ggplot2 magrittr nls2 purrr rlang tidyr]; }; - ezplot = derive2 { name="ezplot"; version="0.7.3"; sha256="07lndf2g4z6gcrg85linjiph04464k3ccxcw0n3zd75zxqbsrhfr"; depends=[dplyr forcats ggplot2 lubridate rlang]; }; + ezplot = derive2 { name="ezplot"; version="0.7.5"; sha256="1706cb52pl9v7r3mrlcjvybb2b2r5x92sw7dmk1hk34w7wp4sifx"; depends=[dplyr forcats ggplot2 lubridate rlang]; }; ezr = derive2 { name="ezr"; version="0.1.5"; sha256="0r4zq0864xpnmczg1zpaasi348j1fllrn0rqfa5fmjh245chcpd4"; depends=[data_table DT ggplot2 ggridges moments shiny shinydashboard weights]; }; fANCOVA = derive2 { name="fANCOVA"; version="0.6-1"; sha256="04mw0blgpwdk6wdg8llrig43psgc0vb42cbimvzbnym8v503dsn3"; depends=[]; }; fAssets = derive2 { name="fAssets"; version="3042.84"; sha256="0aj3gjd54ajviikwh075bympw7dx2dcsgj5p8j96vx2qbbwjmgvb"; depends=[ecodist energy fBasics fMultivar MASS mvnormtest robustbase sn timeDate timeSeries]; }; @@ -8955,11 +9001,12 @@ in with self; { fBonds = derive2 { name="fBonds"; version="3042.78"; sha256="1yb5vyqj66m82xks5qi5cnsppylpprbk656z4lxzg30873hi8pcf"; depends=[fBasics timeDate timeSeries]; }; fCopulae = derive2 { name="fCopulae"; version="4021.84"; sha256="1c0alrrf85biqdwwdjcnn2k06jkhbligvlkgxbbj5jv3pjvf6s19"; depends=[fBasics fMultivar timeDate timeSeries]; }; fExtremes = derive2 { name="fExtremes"; version="4021.83"; sha256="0i0sabk5clk50r9qk69d0rqzkx95x3x9fnwqr8kx40d7v55s1blb"; depends=[fBasics fGarch timeDate timeSeries]; }; - fGarch = derive2 { name="fGarch"; version="4021.88"; sha256="10wrbcgi6v0cpy6rpwln42bhlwds1nm40mg6jwqv4pxzxhx4zlwi"; depends=[fastICA fBasics Matrix timeDate timeSeries]; }; + fGarch = derive2 { name="fGarch"; version="4022.89"; sha256="1v60k30lsdhpilpqwl9yl6mifr6aanwd8bq9byhl9wfmv5xp5a5l"; depends=[cvar fastICA fBasics Matrix timeDate timeSeries]; }; fHMM = derive2 { name="fHMM"; version="1.0.3"; sha256="1jv1pfaxmma3lq7igxdckl650hxa682v1brsq6h03h97jnhlyaw5"; depends=[foreach MASS progress Rcpp RcppArmadillo]; }; fICA = derive2 { name="fICA"; version="1.1-2"; sha256="0dqw3qybnpdnvhfh5inkc4011bzhsxvhpv8zzmkm3q5m6hkc6rlg"; depends=[JADE Rcpp RcppArmadillo]; }; fImport = derive2 { name="fImport"; version="4021.86"; sha256="011hrbwxf6v4abxsk4zw26awnh1nxmn3vgsx58awbx2jg6gcc9cj"; depends=[timeDate timeSeries]; }; fMRIscrub = derive2 { name="fMRIscrub"; version="0.11.2"; sha256="0n8vc5l7y14ifsw4lkgk9jvmplxfimi4l9a4spzw3daaqjk3cph5"; depends=[e1071 MASS pesel robustbase]; }; + fMRItools = derive2 { name="fMRItools"; version="0.1.3"; sha256="0c4gkjrki9126blaq1iy32q1rraw8kp3vwqf50ncwhhc7msjsf37"; depends=[pesel robustbase]; }; fMultivar = derive2 { name="fMultivar"; version="4021.83"; sha256="09jb2zhyji2yxn5ks1ghi33y83vlpkyacxqc0g223fl62ff2ac6d"; depends=[cubature fBasics mvtnorm sn]; }; fNonlinear = derive2 { name="fNonlinear"; version="4021.81"; sha256="1dpzg880wnja357qy3r4v5qbqhx7pkknd0rph75xvvn38p4rc0ca"; depends=[fBasics timeDate timeSeries]; }; fPortfolio = derive2 { name="fPortfolio"; version="3042.83.1"; sha256="1knyrjgfzwf4ppvnb5n325p5f6sidr6q53ss0zw8binhj22gli4y"; depends=[fAssets fBasics fCopulae kernlab MASS quadprog Rglpk rneos robustbase Rsolnp slam timeDate timeSeries]; }; @@ -8970,7 +9017,6 @@ in with self; { fUnitRoots = derive2 { name="fUnitRoots"; version="4021.80"; sha256="1ycsa5mw43mdrp4xb39j8n0c393qmmnyc7ncbkcjgyms2xk8fhjh"; depends=[fBasics timeSeries urca]; }; fabCI = derive2 { name="fabCI"; version="0.2"; sha256="1vga322xpqzsh40n74v8vqiq8zbzrabvg58mp50bcx2ml0dikgnm"; depends=[MASS]; }; fabMix = derive2 { name="fabMix"; version="5.0"; sha256="1gii3mdii9nw423xxn9mhv1pjbw967wdarn828w04zm9dkdcwm48"; depends=[coda corrplot doParallel foreach ggplot2 label_switching MASS mclust mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; - fabisearch = derive2 { name="fabisearch"; version="0.0.4.4"; sha256="02xpndws34wh6kfk677kmpnhhxyxnwpg6asdfdn3wr44rcr7zk2v"; depends=[doParallel doRNG foreach NMF pkgmaker reshape2 rgl]; }; fable = derive2 { name="fable"; version="0.3.2"; sha256="0wwxh76s2f3lgqj2k7l5dd8i215qq55y81pjwrf2fsq0ij99p9br"; depends=[distributional dplyr fabletools Rcpp rlang tibble tidyr tsibble]; }; fable_ata = derive2 { name="fable.ata"; version="0.0.3"; sha256="0rjy5kj10sw2i9ghrsz67l40j7niw9mxm14kzg6prnc34200ki0n"; depends=[ATAforecasting distributional dplyr fabletools lubridate rlang tibble tsbox tsibble]; }; fable_prophet = derive2 { name="fable.prophet"; version="0.1.0"; sha256="12y2k05plg6d6lgqk6617q6z5m6xz33zdsjh56k86h230qqw68rp"; depends=[distributional dplyr fabletools lubridate prophet Rcpp rlang tsibble]; }; @@ -8979,6 +9025,8 @@ in with self; { fabricerin = derive2 { name="fabricerin"; version="0.1.2"; sha256="0ynvnxzxx1iybyy5pvwfsj5y9jjixyrpji9vcl5fq5mjnpg8mpqk"; depends=[glue htmltools]; }; face = derive2 { name="face"; version="0.1-7"; sha256="08ri7mrp3az82x3yyydg7vrla8cdl8bxpcnxfv4cfdhxslks9qb7"; depends=[Matrix matrixcalc mgcv]; }; facebookadsR = derive2 { name="facebookadsR"; version="0.1.0"; sha256="1jj3kq7j4ifscj7vbhnp738ny866njkdxi1n0scc0cyxq8gc7glj"; depends=[jsonlite]; }; + facebookleadsR = derive2 { name="facebookleadsR"; version="0.1.0"; sha256="0azy822s5266vxk0fvxfkgl9i3q3djv7yh3w53znjjvfmmzj1qwz"; depends=[jsonlite]; }; + facebookorganicR = derive2 { name="facebookorganicR"; version="0.1.0"; sha256="0j4zx4gf3k81pv5kfq3ki44rfn1411n7840m1zih3hfvpdd761a0"; depends=[jsonlite]; }; facerec = derive2 { name="facerec"; version="0.1.0"; sha256="1dipcnxjz6yd34w0jrrvj5p0pwdgz1l5m9zvri7mflnz7g34gmaj"; depends=[dplyr httr jsonlite knitr magrittr rlang snakecase stringr]; }; factiv = derive2 { name="factiv"; version="0.1.0"; sha256="1m43kg8mrlnkzs667s4a8c2jkfdgv2pjbwf45vf2w4nlp84camxx"; depends=[Formula generics]; }; factoextra = derive2 { name="factoextra"; version="1.0.7"; sha256="1allvdjhd3pq8xz30b1cymwcik5iaahghrjrlnn54cwkfhfg0kv2"; depends=[abind cluster dendextend FactoMineR ggplot2 ggpubr ggrepel reshape2 tidyr]; }; @@ -8998,7 +9046,7 @@ in with self; { fairmodels = derive2 { name="fairmodels"; version="1.2.1"; sha256="0wxk2z5xh2dc9m9z6dz8cq911n4fd4a5zl03bg32nh05zq09xhwp"; depends=[DALEX ggplot2 patchwork scales]; }; fairness = derive2 { name="fairness"; version="1.2.2"; sha256="12jf2p8gmj5d6r9h9cwy208qwyqi606b54v0d99vpr171yijqvqk"; depends=[caret devtools e1071 ggplot2 pROC]; }; fairsubset = derive2 { name="fairsubset"; version="1.0"; sha256="0iw16fs2mb9p14vr34izw3sirbndyy8w07df3scy7gkkcx2nz2bz"; depends=[matrixStats]; }; - fake = derive2 { name="fake"; version="1.0.0"; sha256="0c2vgqm45sg2n0mjzi1qpvy63vm4k3bdymxfkifhw6z34f3lw3c3"; depends=[huge igraph MASS Rdpack withr]; }; + fake = derive2 { name="fake"; version="1.3.0"; sha256="09pl3q8q9pxmqbz19p4gi4xxqzyg99gs6wgd6wa80vjfc7xjqh87"; depends=[huge igraph MASS Rdpack withr]; }; fakmct = derive2 { name="fakmct"; version="0.1.0"; sha256="172g7gx6019bimfg4lm253sp9c7rcmm56c5wmxv1g575fr393n8k"; depends=[]; }; falcon = derive2 { name="falcon"; version="0.2"; sha256="09hlvwwj3k3nhcsxijjvv8x74a9m200ayjjplrp4baxvczwyq341"; depends=[]; }; falconx = derive2 { name="falconx"; version="0.2"; sha256="0648mvbc7ga7vr2xqzyln3dgd11h5s4bqhv3p55mj7smr4qv7hv9"; depends=[]; }; @@ -9006,9 +9054,10 @@ in with self; { famSKATRC = derive2 { name="famSKATRC"; version="1.1.0"; sha256="1xbh0by4sjxrmy00v1svcj3lb98p9krpncbhpjbli1jd2p47yk60"; depends=[bdsmatrix CompQuadForm coxme kinship2]; }; fame = derive2 { name="fame"; version="2.21.1"; sha256="18lzf2vxyzlmd73m9q0si663mjjm66nrf7q1iy0fw73gpvxqr9bf"; depends=[tis]; }; familial = derive2 { name="familial"; version="1.0.4"; sha256="01k7pc2li1la0b0rxs2r2vb5k5qllhm6ykvs4xl455g6gg4pcbrc"; depends=[DepthProc ggplot2 matrixStats]; }; - familiar = derive2 { name="familiar"; version="1.3.0"; sha256="1m73pyhq28qxhz90l9l2hvxh9cisa42f2m9355fcfjwrmwff97xw"; depends=[data_table rlang rstream survival]; }; - fanc = derive2 { name="fanc"; version="2.3.5"; sha256="17zvd3y81vqc1cwk5xidgikjxclx36ydp3mj1ps0zxzl3dz5a50f"; depends=[ellipse Matrix]; }; + familiar = derive2 { name="familiar"; version="1.4.0"; sha256="1q8h7z4d545s1md5m37g2033yw0q7f2jdc0jf2mrf1hqj12vmvak"; depends=[data_table rlang rstream survival]; }; + fanc = derive2 { name="fanc"; version="2.3.9"; sha256="02w10lm4nggab5q16ld9xgpa4x4bygfiigs8m12yiah5ah1n5vk8"; depends=[ellipse Matrix]; }; fancycut = derive2 { name="fancycut"; version="0.1.2"; sha256="1xg5qjxf77g10h07x6rvb8c3klc9gbr77bkw352qpas268pkswl2"; depends=[]; }; + fangs = derive2 { name="fangs"; version="0.2.2"; sha256="0gcwrnp06g0rwlkfi7qz2i2l56pqmrlb6knkqsaa3n3nx2d46x1k"; depends=[]; }; fanovaGraph = derive2 { name="fanovaGraph"; version="1.5"; sha256="1hffda52yk24slbgsfdgkpg3vsryfnhlw09r39cbyz483i7xd8d0"; depends=[DiceKriging igraph sensitivity]; }; fanplot = derive2 { name="fanplot"; version="4.0.0"; sha256="08zd2af26ah1rdkzxi1sv4c4l06jpxd6m38q3xy657k2jm90rkkc"; depends=[]; }; fansi = derive2 { name="fansi"; version="1.0.3"; sha256="0sn0kflgcn2qrrv646pzqylm02cx8l5ws473ppmvla4xihyvi9w6"; depends=[]; }; @@ -9020,10 +9069,9 @@ in with self; { farr = derive2 { name="farr"; version="0.2.27"; sha256="0xffahbj5dxdlg25k3nj554np85h51d6yarxxam9ndxqmrva6k0y"; depends=[DBI dbplyr dplyr lubridate magrittr readr rlang stringr tibble tidyr]; }; farrell = derive2 { name="farrell"; version="0.2.1"; sha256="0i546w5p40j9wqiq7qvbxw0426msavbdpnh258jcg6bagc6bywh8"; depends=[Benchmarking data_table dplyr DT magrittr miniUI readr rlang shiny shinycssloaders shinyWidgets tibble]; }; farver = derive2 { name="farver"; version="2.1.1"; sha256="1klnr73fhm7n46q85in1v9gi99y6rcdzzg4h4wvnbx23lxndmkqd"; depends=[]; }; - fasano_franceschini_test = derive2 { name="fasano.franceschini.test"; version="2.1.0"; sha256="1vxkq7pj2gsln3vyj3g0qx1ycvar1qrrv4hla33wz3a5g2fy9fnx"; depends=[Rcpp RcppParallel]; }; + fasano_franceschini_test = derive2 { name="fasano.franceschini.test"; version="2.1.1"; sha256="0h28ph562ac345l022x9jblzhkk7qn2knrp5jh38flw0xkv9g2yf"; depends=[Rcpp RcppParallel]; }; fasjem = derive2 { name="fasjem"; version="1.1.2"; sha256="1bbrcyyg96hakgla3604byrkn9034197vy2is048kdq20yr2y11n"; depends=[igraph]; }; fasstr = derive2 { name="fasstr"; version="0.5.0"; sha256="1cpzihrniyg7scxbj349ahvp9p1ji4r1498fh5hv38qas6pk3vil"; depends=[dplyr e1071 fitdistrplus ggplot2 lubridate openxlsx PearsonDS plyr purrr RcppRoll scales tidyhydat tidyr zyp]; }; - fastCorrDiff = derive2 { name="fastCorrDiff"; version="0.5"; sha256="0fis04xfarvmhpdkh7524ffga8f8svpcn3837rqwy0g039dcfa64"; depends=[irlba Matrix plyr RSpectra]; }; fastDummies = derive2 { name="fastDummies"; version="1.6.3"; sha256="1pw1bpp69sbs8yc1s5ffz11q249ljfwbgfrq6irg5pyp37z38fdx"; depends=[data_table stringr tibble]; }; fastGHQuad = derive2 { name="fastGHQuad"; version="1.0.1"; sha256="1zj7nsbnx4g253m3dpz9vi3zk3jxwrixwjw1ks6n4shpb4dlkp2w"; depends=[Rcpp]; }; fastGLCM = derive2 { name="fastGLCM"; version="1.0.2"; sha256="1f7mafhsygbz1vrjvpva2zql0d6dphzr31skh9agancghh8hnm3q"; depends=[OpenImageR R6 Rcpp RcppArmadillo rlang]; }; @@ -9040,9 +9088,9 @@ in with self; { fastRhockey = derive2 { name="fastRhockey"; version="0.4.0"; sha256="1xw4ylrsf9wylym79svazrmw2c9fmqk8n0sz1vypsm29dsic879k"; depends=[cli data_table dplyr glue httr janitor jsonlite lubridate magrittr progressr purrr Rcpp RcppParallel rlang rvest stringr tibble tidyr]; }; fastSOM = derive2 { name="fastSOM"; version="1.0.1"; sha256="1fzy7lfx1fn9993h0qh6vbwq0w4gfgbdrprmzb1z3aqq6nqvmngm"; depends=[]; }; fastText = derive2 { name="fastText"; version="1.0.3"; sha256="1kb0ig17rq4iyqqlppf39ixgfqgm22wmv27xji2rknsq9df3c4kr"; depends=[data_table ggplot2 glue Rcpp]; }; - fastTextR = derive2 { name="fastTextR"; version="2.0.0"; sha256="1ggmwsw2qnq8v3s8iaxi8q66c898pc15wfgpsp6h0mc761qih5lf"; depends=[Rcpp slam]; }; + fastTextR = derive2 { name="fastTextR"; version="2.0.1"; sha256="1f1b9dsir0dxw2psp721vgpjj6pwrx1xxsd0cqxnfq8mpwswf125"; depends=[Rcpp slam]; }; fastTopics = derive2 { name="fastTopics"; version="0.6-142"; sha256="0fchwd54dn6abw5z8wk4wcysn9amjxmkayz8wzl3nwfr0ldjkc67"; depends=[ashr cowplot dplyr ggplot2 ggrepel htmlwidgets irlba Matrix MCMCpack pbapply plotly progress quadprog Rcpp RcppArmadillo RcppParallel Rtsne uwot]; }; - fastWavelets = derive2 { name="fastWavelets"; version="1.0.0"; sha256="1w2dbibl3291bqygwl2pn7jdskq6sy713r39hr4jjbh0zf0jlxdd"; depends=[Rcpp]; }; + fastWavelets = derive2 { name="fastWavelets"; version="1.0.1"; sha256="1kz49iw3d37kby6hdk7zvsahms735w46pky186jz0qq9vh4agxn9"; depends=[Rcpp]; }; fasta = derive2 { name="fasta"; version="0.1.0"; sha256="0wnppxn3039dj58xm0b66fsyq537bk8k8m56im11xj1iwc3zc6vw"; depends=[]; }; fastadi = derive2 { name="fastadi"; version="0.1.1"; sha256="1hvi430ws1yzw10fp4z177wc1bnj11pxmvjsbmx0p54bcbb3a32a"; depends=[ellipsis glue logger LRMF3 Matrix Rcpp RcppArmadillo RSpectra]; }; fastai = derive2 { name="fastai"; version="2.2.0"; sha256="19hybrmcrlgawayvl0wxr646dmxmwjap64wdhd023rclby1nsg4c"; depends=[generics ggplot2 ggpubr glue png reticulate]; }; @@ -9053,7 +9101,7 @@ in with self; { fastcox = derive2 { name="fastcox"; version="1.1.3"; sha256="0jn19v6mkwgyz8x63xrfgkgnf0f2rq338r5qkhz690mdzr4c47a3"; depends=[Matrix]; }; fastdigest = derive2 { name="fastdigest"; version="0.6-3"; sha256="02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"; depends=[]; }; fasterElasticNet = derive2 { name="fasterElasticNet"; version="1.1.2"; sha256="1hr0wc6s6zpq1hkfgshf0dqjxb7s2849bb8lb04nmi6p42r3628g"; depends=[Rcpp RcppArmadillo]; }; - fasterize = derive2 { name="fasterize"; version="1.0.3"; sha256="10bzl77c1b9jhcn1xp467qzp2n8c7s3wpxn53qjh1nwvbri5kd32"; depends=[raster Rcpp RcppArmadillo sp]; }; + fasterize = derive2 { name="fasterize"; version="1.0.4"; sha256="1ckxi2iyxdahhgbliblcrkzziblfagzr54srjk27yp1lcgivvvs4"; depends=[raster Rcpp RcppArmadillo sp]; }; fastglm = derive2 { name="fastglm"; version="0.0.3"; sha256="0283kgk81cxbii7ljmp1rzqg5mzkvf7cj7lflhhhkgj5ljqina2i"; depends=[BH bigmemory Rcpp RcppEigen]; }; fasthplus = derive2 { name="fasthplus"; version="1.0"; sha256="05j4lg1gkkz1vi99dx73igvk9xyrli8j6m4hzhpcnyhy0h9bxiqj"; depends=[]; }; fastkmedoids = derive2 { name="fastkmedoids"; version="1.2"; sha256="1z98ndxhq2ag870g0xqkw04b4k722994vh0pq46bw8bqc9v7bpkk"; depends=[Rcpp]; }; @@ -9073,7 +9121,7 @@ in with self; { fastrmodels = derive2 { name="fastrmodels"; version="1.0.2"; sha256="1333546nk429l6s4icbmx8hmh29wsc252wbmmhsmgb116l4ra9zi"; depends=[xgboost]; }; fastshap = derive2 { name="fastshap"; version="0.0.7"; sha256="0gxch67i3bj6m8nb94m5hswq058w6n1q9war4dy2qnimlv7cmhdv"; depends=[abind ggplot2 gridExtra matrixStats plyr Rcpp RcppArmadillo tibble]; }; fasttime = derive2 { name="fasttime"; version="1.1-0"; sha256="00290sxfa6nihahm3s9bslpsmyfm0cpziajmr9mg7grxrzx53ia6"; depends=[]; }; - fastverse = derive2 { name="fastverse"; version="0.2.4"; sha256="07nzhyfvs52b4bhm7c0m9iizw4mwkgnj1h5vvpxr04d5zkrkk7y0"; depends=[collapse data_table fst kit magrittr matrixStats]; }; + fastverse = derive2 { name="fastverse"; version="0.3.0"; sha256="0sr2nwqwxcvn118srrpws2cw0vpimchrv0k03z0f7i07989fqfc7"; depends=[collapse data_table kit magrittr]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.5"; sha256="08bbd17aqmfcacvk283bpf9cp1isf5pgfdciwxn0f7ahdzd81g4s"; depends=[kinship2 multgee]; }; faux = derive2 { name="faux"; version="1.1.0"; sha256="0cmgsm8c8w5d5zk00j4872x7fby0rdi7lmw0w0ncahlnh72grpjm"; depends=[dplyr ggplot2 jsonlite lme4 rlang truncnorm]; }; fauxnaif = derive2 { name="fauxnaif"; version="0.7.1"; sha256="1d2sfcknlaa4m3sq3cg65iq17x3ax0zgkgxkcyin3d8r3sw9k3p6"; depends=[cli rlang]; }; @@ -9085,14 +9133,14 @@ in with self; { fbati = derive2 { name="fbati"; version="1.0-5"; sha256="037rzw2mnhb7m83hrx8pzwy2n4fyhbjzg2nhmlgxyr1qra638p3v"; depends=[fgui pbatR rootSolve]; }; fbnet = derive2 { name="fbnet"; version="1.0.1"; sha256="17kafsnzijjkjlp15yv3qy1vga7vsgna74ax5yk0mvdninl3dxha"; depends=[assertthat igraph Rsolnp]; }; fbroc = derive2 { name="fbroc"; version="0.4.1"; sha256="1v73wl3yckcqx43fz1lzcsy6v08vmbmi7yi623yhgqywixxv2bx3"; depends=[ggplot2 Rcpp]; }; - fbst = derive2 { name="fbst"; version="1.9"; sha256="0lfi2rh84qijjcwxycf6v78qfk8d67vpbcjlaaplvaq6k2h68bby"; depends=[bayestestR cubature ks rstanarm viridis]; }; + fbst = derive2 { name="fbst"; version="2.1"; sha256="15d73hngw8607la36cpl5z7ac18cpwkmqzp67ga2c5n94z2h8asc"; depends=[bayestestR cubature ks rstanarm viridis]; }; fc = derive2 { name="fc"; version="0.1.0"; sha256="0x41xfchy499kz0qi7fp12vpkbcddprv19mmk48lxzavv4f5avfh"; depends=[codetools]; }; fca = derive2 { name="fca"; version="0.1.0"; sha256="0jcdyylb0byz70k3kypa2mdd5sc5nq81jfbpljjg2amczq7s5wzy"; depends=[]; }; fcaR = derive2 { name="fcaR"; version="1.2.0"; sha256="04hmyndadrm6bs5vxbyh9wii6xm3vw71dy06q5b69x2344y3p5a9"; depends=[forcats fractional glue magrittr Matrix POSetR purrr R6 Rcpp registry settings stringr tibble tikzDevice]; }; fcci = derive2 { name="fcci"; version="1.0.1"; sha256="02q6q0q7fqdbp20fdf33jbkh0aj9nzl6dwysr0nn146ciz3vqgin"; depends=[assertthat Rcpp rlang]; }; fcfdr = derive2 { name="fcfdr"; version="1.0.0"; sha256="16mnpr64x00qwbgq9pw69k941yb0i7mx7ncsilahicprxqyfpfww"; depends=[bigsplines cowplot data_table dplyr fields ggplot2 hexbin Hmisc locfdr MASS polyCub spatstat_geom]; }; fcirt = derive2 { name="fcirt"; version="0.1.0"; sha256="1wiyiz51mkm5kd95xmpvlwng51awpp4y133dd5q88mnafrxyij1h"; depends=[BH numDeriv Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - fclust = derive2 { name="fclust"; version="2.1.1"; sha256="11dsf7mb075m1m1ilqsacc0s4907wq6alvdfh6nizsyr01wiqw3b"; depends=[MASS Rcpp RcppArmadillo]; }; + fclust = derive2 { name="fclust"; version="2.1.1.1"; sha256="1d5qa30jlx6qn6npvccl97fcmh5a4wf3nw0d7jvn3y7mcb5yqlqk"; depends=[MASS Rcpp RcppArmadillo]; }; fcm = derive2 { name="fcm"; version="0.1.3"; sha256="1mqk6szczsixdvw0inkypij4cw2syng5l5ccw0xk55kc21l1lzn0"; depends=[ggplot2 reshape2]; }; fcr = derive2 { name="fcr"; version="1.0"; sha256="17jrz5zp1msd2khl1lwnb5sgxcigagni556rhn7qm9g0aykbh8yj"; depends=[face fields mgcv]; }; fcros = derive2 { name="fcros"; version="1.6.1"; sha256="04yr6lqs38lczsmdvdm78qn63836qj7xwspgh3h3n3gh8cssd83x"; depends=[]; }; @@ -9104,7 +9152,7 @@ in with self; { fdaACF = derive2 { name="fdaACF"; version="1.0.0"; sha256="0qrsj25p6h2xg25v0ayk8x31d4whyy0mpf2xdpw3hcwhb71mbfhn"; depends=[CompQuadForm fda pracma vars]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.6"; sha256="0hyhb67qvvhyq68k5h4ffvsl4lmw66nfy5l14kwxnn42h3b810sc"; depends=[Formula Rcpp RcppArmadillo]; }; fdaMocca = derive2 { name="fdaMocca"; version="0.1-1"; sha256="0y54d8a38d5hjnh8iw2r4zl2d2xz72hjddhxbar91jk6zf3kzpsy"; depends=[doParallel fda foreach Matrix mvtnorm]; }; - fdaPDE = derive2 { name="fdaPDE"; version="1.1-8"; sha256="0na5rylh5lcs33xgxb4zjwmr3in5220vjhml0hlh5017hbxfgcam"; depends=[geometry Matrix plot3D RcppEigen rgl]; }; + fdaPDE = derive2 { name="fdaPDE"; version="1.1-11"; sha256="09ba71fnblv9r2c22amy92wv3xpa395rf7x681p8zs5rldhk8i5a"; depends=[Matrix plot3D Rcpp RcppEigen rgl]; }; fdaPOIFD = derive2 { name="fdaPOIFD"; version="1.0.3"; sha256="0c773hidrg69gs9lzdcwf4hzzmid3kwf73pw6c807y1b4lgiai20"; depends=[FastGP fdapace ggplot2 magrittr MASS patchwork reshape2 tibble]; }; fdacluster = derive2 { name="fdacluster"; version="0.1.1"; sha256="1rr1hcnpzya53h09p4yc1784kzrw7wlcylax4x2pdp1grzf1wakq"; depends=[dplyr ggplot2 magrittr nloptr purrr Rcpp RcppArmadillo tibble tidyr]; }; fdaconcur = derive2 { name="fdaconcur"; version="0.1.0"; sha256="1xlhn9di70z49y79l2pwffqykmz8j5p09hihhf6rsbsrjy42nwbv"; depends=[fdapace]; }; @@ -9115,7 +9163,6 @@ in with self; { fdasrvf = derive2 { name="fdasrvf"; version="1.9.8"; sha256="1x8djgy3p8phqq0d3hbfhjk5h30sx05y7k5nqfrw8k8ix0x040p4"; depends=[coda doParallel fields foreach lpSolve Matrix matrixcalc mvtnorm Rcpp RcppArmadillo testthat tolerance viridisLite]; }; fdatest = derive2 { name="fdatest"; version="2.1.1"; sha256="13sd85ypx2z07qxsqhsbc5w0yasf01yw06qx91ymh0yr8538x3x3"; depends=[fda]; }; fddm = derive2 { name="fddm"; version="0.5-2"; sha256="0sh3qnsakl02wpzwhxyqdikn7xx5crh401w3d149ww2jxvagjmsf"; depends=[Rcpp]; }; - fdistr = derive2 { name="fdistr"; version="0.1.0"; sha256="1i9nq4jmszbmwk4m6jfn7rifsn7aay40cj6kz23b9ihj3phqffi8"; depends=[dplyr ggplot2 magrittr usethis]; }; fdm2id = derive2 { name="fdm2id"; version="0.9.8"; sha256="1j6cbgvkf6glx1c77pqzbk2qbii128ycgm3x75k3qq840b2ma0cc"; depends=[arules arulesViz FactoMineR mclust nnet pls]; }; fdq = derive2 { name="fdq"; version="0.12"; sha256="198nsyzv0ni2mjx12wik58c7z5vrc1mfk80k3iv94dz1iq9fprqf"; depends=[data_table Fgmutils ggplot2 randomcoloR sqldf]; }; fdrDiscreteNull = derive2 { name="fdrDiscreteNull"; version="1.4"; sha256="1lwznpwfnhhv0h7qwy9jc7li752bq7hgmkh86qzyqz7k18zgx4iw"; depends=[MCMCpack qvalue]; }; @@ -9146,6 +9193,9 @@ in with self; { fergm = derive2 { name="fergm"; version="1.1.4"; sha256="1d979z2m5f13i1w9d8kh9rnaafavsap169w0nycpd5j2f3dfhyn7"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan]; }; fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; ferrn = derive2 { name="ferrn"; version="0.0.2"; sha256="0yxw18yzj5j2fpj4rf9flmmng4s2ldgx4yaywa2hrclbnl43c578"; depends=[dplyr geozoo gganimate ggforce ggplot2 ggrepel magrittr purrr rlang scales stringr tibble tidyr tourr]; }; + fertilmodel = derive2 { name="fertilmodel"; version="1.0"; sha256="1mznpay0ibdgm67k5xjfwfb5lp07r4163h3ad33k2zsyk2f31nsq"; depends=[]; }; + fetchGoogleAnalyticsR = derive2 { name="fetchGoogleAnalyticsR"; version="0.1.0"; sha256="12s18jicx9rd5dhc8l7hm09lr71nhz6k72j3w4c1j5ds9h522krg"; depends=[jsonlite]; }; + fetchSalesforceR = derive2 { name="fetchSalesforceR"; version="0.1.0"; sha256="1826i031wndasgcxxa0bh88vp1r49flzphyfk79pixvlrfjn6gi8"; depends=[jsonlite]; }; ff = derive2 { name="ff"; version="4.0.7"; sha256="1yl3ipzz9bjkfy9bbna7xz5n7iz4lchnw5l7agww7by764yk6iqa"; depends=[bit]; }; fflr = derive2 { name="fflr"; version="2.1.0"; sha256="0982h1r2hjn54xvnkxn999r4hlgxm6c1xw98hvnpa4zhk7959wsw"; depends=[httr jsonlite tibble]; }; ffmanova = derive2 { name="ffmanova"; version="1.1.1"; sha256="19kdlcslqnwcsdjxx0n86is5cjz21sn8vpylyq8s4i7q7nrlyxwp"; depends=[]; }; @@ -9166,7 +9216,7 @@ in with self; { fglsnet = derive2 { name="fglsnet"; version="1.0"; sha256="00qn4k4xm1zfkz77lys468c1mfx3vyfjkf19wdbcvgssrmf6w0xd"; depends=[lmtest MASS Matrix matrixcalc network sandwich sna]; }; fgm = derive2 { name="fgm"; version="1.0"; sha256="0i6lbqxxjq78dql14qwqs7slnn0kyls2g3a9biabny2narwf6n3m"; depends=[fdapace JGL]; }; fgui = derive2 { name="fgui"; version="1.0-8"; sha256="024fzd1c7iwqprn26hwjb9l2qlvvyzl449d7iixy0x69djwsrysv"; depends=[]; }; - fhircrackr = derive2 { name="fhircrackr"; version="2.0.0"; sha256="1vjlslf3zg1c3vmblfsh8brmy4ikvir22xnmbp1529fs9kyr8b3y"; depends=[data_table httr lifecycle stringr xml2]; }; + fhircrackr = derive2 { name="fhircrackr"; version="2.1.0"; sha256="07zngm3dad242aabi4gz9vzvhdcfksbg18vlswvp036fbyw63p4j"; depends=[data_table httr lifecycle stringr xml2]; }; fiberLD = derive2 { name="fiberLD"; version="0.1-7"; sha256="04rqqg8zr6adhcls0d381fjrrc797aqy84gzl9gx3qiwlwcw8x0d"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo VGAM]; }; fic = derive2 { name="fic"; version="1.0.0"; sha256="18xz94w1ab17jfi61bdg9z3pm63g488v17ns2ivizkza4gg07pv8"; depends=[abind ggplot2 mvtnorm numDeriv scales survival tensor]; }; fidelius = derive2 { name="fidelius"; version="0.0.2"; sha256="18dsw069j3jzl0splgjjdsybny1hq0dmiyygri8nlfwshijkw15h"; depends=[askpass fs htmltools readr rlang rmarkdown rstudioapi sodium whisker]; }; @@ -9175,9 +9225,11 @@ in with self; { fields = derive2 { name="fields"; version="14.1"; sha256="0d2lm4s9p3rv676z291fynpx3vdmi6cikcqlj23fxlj34icwbi2p"; depends=[maps spam viridis]; }; fiery = derive2 { name="fiery"; version="1.1.4"; sha256="0wfn7l766074pm8a821sx9z1xprq2ps90ayhs5l4pfppqz91kdf3"; depends=[assertthat crayon future glue httpuv later R6 reqres stringi uuid]; }; fig = derive2 { name="fig"; version="1.0.0"; sha256="1mzvng4r4xmkmbl55pspjk9bcvkri96vkmjaqkjn8nqxv39sy1pr"; depends=[R6]; }; + figir = derive2 { name="figir"; version="0.1.6.8"; sha256="0jbl6bxms4g6m3qamcgl5z0k57f2r3444577hi78gpsbwwx0n022"; depends=[]; }; + figma = derive2 { name="figma"; version="0.1.0"; sha256="10lznzqlrnnp44sfqdv6x2c2prp9yb7g64dv59b0bv094jx1cg82"; depends=[dplyr httr purrr rlang tibble]; }; figpatch = derive2 { name="figpatch"; version="0.2"; sha256="0sy63131al6z0hlhpb11aphlxdigb0pqk9bq9mxc9nbc59036jjq"; depends=[ggplot2 magick magrittr patchwork]; }; figuRes2 = derive2 { name="figuRes2"; version="1.0.0"; sha256="1s1bvhgzczkpxfmi1cyz4cfvpxvq28fm5867a4w5q0wpjcbhlma4"; depends=[ggplot2 gridExtra gtable plyr reshape2 scales stringr survival]; }; - file2meco = derive2 { name="file2meco"; version="0.4.0"; sha256="1wfg1mfj52ghkvyb84q2j9kxq7szx6mr64v3bspi410gr7n1vpd2"; depends=[ape dplyr magrittr Matrix microeco rhdf5 tidyr yaml]; }; + file2meco = derive2 { name="file2meco"; version="0.5.0"; sha256="04rvmkw9b640ras11z8na9ac8kddrdphbjhq8il3pyh0jrf15yvh"; depends=[ape dplyr magrittr Matrix microeco rhdf5 tidyr yaml]; }; filearray = derive2 { name="filearray"; version="0.1.5"; sha256="0s7qy4rf02i7r6xfysdlflgk3jwqvi2zzvk8zxhnb1x1wqncmfng"; depends=[BH digest Rcpp]; }; filebin = derive2 { name="filebin"; version="0.0.5"; sha256="1k13vwppk3f3acnyz32wrjmr80x0lbdzv0sx74xr87n1kbrrv5fn"; depends=[dplyr httr janitor logger purrr stringi tibble tidyr]; }; filehash = derive2 { name="filehash"; version="2.4-3"; sha256="1ga17smgjd4qsnf5a7qk0giwhpc5969ylqj520favs1k6b4y557k"; depends=[]; }; @@ -9191,7 +9243,8 @@ in with self; { fillr = derive2 { name="fillr"; version="1.0.0"; sha256="1gx1ihp8j90ywmm6mmmfq4jd6apxawk9s5dfw3jq0wm1c290zqpv"; depends=[]; }; filterNHP = derive2 { name="filterNHP"; version="0.1.2"; sha256="0kk6548nr5786ywa83v8by4c1n7ljh9sy4fshpfqizp49fv9zv22"; depends=[data_tree rclipboard shiny shinyBS shinyjs shinyWidgets]; }; finalfit = derive2 { name="finalfit"; version="1.0.5"; sha256="0h7wzpmsr0bfk4y3k49c2vyd4ianvvhrnh7j0nxpia1qvrakyvf9"; depends=[bdsmatrix boot broom dplyr forcats GGally ggplot2 gridExtra lme4 magrittr mice pillar pROC purrr scales stringr survival tidyr tidyselect]; }; - finbif = derive2 { name="finbif"; version="0.7.0"; sha256="0sfmmxnbr3x6fgjg13b0i0va8vbqvqpf4y661z6mn3yrq0rizrva"; depends=[digest httr jsonlite lubridate lutz]; }; + finalsize = derive2 { name="finalsize"; version="0.1"; sha256="0ir5xgr4qc0bl5c3gl06afcvbkhixaadwlyh0np5fmzlfsl8mpv1"; depends=[Rcpp RcppEigen]; }; + finbif = derive2 { name="finbif"; version="0.7.1"; sha256="1fsap2saq8xr9s440h195851987sp3aaw8bjg66s3bsk78bvap1s"; depends=[digest httr lubridate lutz]; }; finch = derive2 { name="finch"; version="0.4.0"; sha256="0q7riaxms460c6z2gb8i0q4pb348bnvry46bjd7pb9mh8fnl1i8b"; depends=[data_table digest EML hoardr xml2]; }; findInFiles = derive2 { name="findInFiles"; version="0.4.0"; sha256="1saxi8l4006wwxrw18g7wx0pj7l427a2rnb723k0irlhvq0icgwq"; depends=[crayon htmlwidgets shiny stringi stringr tibble vctrs]; }; findInGit = derive2 { name="findInGit"; version="0.1.1"; sha256="1j5mvp34nsczmvp5jx7c9gp20q7aqaxrqm2zvj8aq31rc8mfaxk9"; depends=[crayon htmlwidgets stringr]; }; @@ -9204,7 +9257,7 @@ in with self; { finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; finity = derive2 { name="finity"; version="0.1.4.1"; sha256="0xs3vx0vj165hj4dq8ivrdf6fcvj23zhp2ai79rgpyb5rr5ndkvc"; depends=[BH Rcpp RcppArmadillo stabledist]; }; finnishgrid = derive2 { name="finnishgrid"; version="0.1.0"; sha256="0gndrllz3y7yqrg5vw6ba7dg7hn4w3085rpy7h9hdd8swxqfvlc6"; depends=[httr jsonlite]; }; - finnts = derive2 { name="finnts"; version="0.2.0"; sha256="113nwwy494vghqrmxdnbgnkd6kzmdkba144q46ldfiif2gyx44g3"; depends=[cli Cubist dials doParallel dplyr earth foreach generics glmnet gtools hts kernlab lubridate magrittr modeltime modeltime_gluonts modeltime_resample parsnip plyr purrr recipes rsample rules stringr tibble tidyr tidyselect timetk tune workflows]; }; + finnts = derive2 { name="finnts"; version="0.2.1"; sha256="0ih4z51n3g1villz59l0fbb9lwrs4cv46chmh9nv6ry3rmskrj41"; depends=[cli Cubist dials doParallel dplyr earth foreach generics glmnet gtools hts kernlab lubridate magrittr modeltime modeltime_gluonts modeltime_resample parsnip plyr purrr recipes rsample rules stringr tibble tidyr tidyselect timetk tune workflows]; }; finreportr = derive2 { name="finreportr"; version="1.0.4"; sha256="145idg2c6qmqp29afalnhxxzky08j21dmm05mp3zf63aq9mq41d4"; depends=[curl dplyr httr rvest XBRL xml2]; }; fipio = derive2 { name="fipio"; version="1.1.1"; sha256="0wvx64nazbv44hdsj3q6mz70m81asmwgxp28sapaaal36l180jfs"; depends=[]; }; fipp = derive2 { name="fipp"; version="1.0.0"; sha256="0wr3czwsqwa1bpdcjk0r1739vjanxc0fv0vnl3r5lgykrbhw9v3r"; depends=[matrixStats Rcpp RcppArmadillo]; }; @@ -9221,6 +9274,7 @@ in with self; { fitConic = derive2 { name="fitConic"; version="1.2"; sha256="0mwnbq32mpj8d4127jwb283mn3gs4hm0klwk9prsrfkdnhqai41i"; depends=[pracma]; }; fitHeavyTail = derive2 { name="fitHeavyTail"; version="0.1.4"; sha256="1cb7cnir7fpvf8j8abw8imz6zxg4dznjmkyrbcx0yr09qvjal81b"; depends=[ghyp ICSNP mvtnorm numDeriv]; }; fitODBOD = derive2 { name="fitODBOD"; version="1.4.1-1"; sha256="0sx7la3bcii8fh8ril5ibbr4x97zgqwl7h889gnk6j733pcmgx0p"; depends=[bbmle hypergeo]; }; + fitPS = derive2 { name="fitPS"; version="0.2"; sha256="13xn30nbq928v6dmcjjl2vhrvc8qs6m7ldc2wzl14aanprcjiw18"; depends=[dplyr readxl VGAM]; }; fitPoly = derive2 { name="fitPoly"; version="3.0.0"; sha256="0ws1vsh8if9i9i7820ak32b0bysjc0z09nbrk17qpms0b11cpc3g"; depends=[foreach]; }; fitbitScraper = derive2 { name="fitbitScraper"; version="0.1.8"; sha256="0b4d7xw6inp6l1dkfwyrzxwg4vspp4vzlwrhv14ajxrqz6irj8a0"; depends=[httr jsonlite stringr]; }; fitbitViz = derive2 { name="fitbitViz"; version="1.0.4"; sha256="1cp5nkaj9ikqcv3yp030id1wklj3jnx002sz2ib0vzza81zyw8bw"; depends=[data_table ggplot2 ggthemes glue hms httr jsonlite leafgl leaflet lubridate magrittr paletteer patchwork raster rayshader rstudioapi scales sf terra varian viridis XML]; }; @@ -9251,6 +9305,7 @@ in with self; { flashCard = derive2 { name="flashCard"; version="0.1.0"; sha256="1l1g3hy0gchsmdj04d065rl71hkvxydyqsmav5qwxyz2mdkknkhi"; depends=[htmlwidgets jsonlite]; }; flashClust = derive2 { name="flashClust"; version="1.01-2"; sha256="0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"; depends=[]; }; flashlight = derive2 { name="flashlight"; version="0.8.0"; sha256="0gzpq3cmb8kspjhk74qrhlkdj8fjw75sywnwvkwbvy3cp11hffp6"; depends=[cowplot dplyr ggplot2 MetricsWeighted rpart rpart_plot tidyr tidyselect withr]; }; + flashr = derive2 { name="flashr"; version="0.1.0"; sha256="0w3fs6psarqp19zc8qpmg2744cd64lxgi4hbkp5nl6v00p53nkvc"; depends=[cli curl gh httr memoise revealjs rmarkdown testthat]; }; flatness = derive2 { name="flatness"; version="0.1.4"; sha256="0zl1x4wn5wgm9aksb96ghh395z7fz1awglfjdiid4ak5ssbqgsbq"; depends=[data_table lattice xtable]; }; flatr = derive2 { name="flatr"; version="0.1.1"; sha256="10l98a3f57wahfpdqxj70r25zfhk4vzzd014pdnriy458yrfd7rw"; depends=[dplyr magrittr tibble]; }; flattabler = derive2 { name="flattabler"; version="1.2.0"; sha256="156q3af7bmqcaxvl35634ph8dzs6gdjxqqkgwi214kj2pywpqg2a"; depends=[dplyr readxl stringr tibble tidyr]; }; @@ -9264,15 +9319,15 @@ in with self; { flexmix = derive2 { name="flexmix"; version="2.3-18"; sha256="0lcvsvmhkbwac50l109an6prl1ng4mkyvr436344b20897ph28j6"; depends=[lattice modeltools nnet]; }; flexmixNL = derive2 { name="flexmixNL"; version="0.0.1"; sha256="0bk5v0cnsn1qkd1b86vj0bnpr4l9d6523kpkgzb1l1sqyscawfmm"; depends=[flexmix gnm]; }; flexpolyline = derive2 { name="flexpolyline"; version="0.2.6"; sha256="1h4csrcx193372aw6di2wr0zzd71w1bdf0b9zqqwak1q3mdszgl6"; depends=[Rcpp sf]; }; - flexrsurv = derive2 { name="flexrsurv"; version="2.0.11"; sha256="0wxv4zch353zmkfmcm61w39sli6h553bpj27mf4hi51n1p8ajkx1"; depends=[Epi Formula formula_tools Matrix numDeriv orthogonalsplinebasis R_utils statmod survival]; }; - flexsiteboard = derive2 { name="flexsiteboard"; version="0.0.6"; sha256="1wrzm3nm5hngk30zzcn18f8jcvfsxw751zgvw4fkff6hqbj2yf6l"; depends=[flexdashboard htmltools htmlwidgets jsonlite knitr rmarkdown yaml]; }; + flexrsurv = derive2 { name="flexrsurv"; version="2.0.13"; sha256="06xzfbn8i6jkgq0q71a5wxq6f1g6nkw47akp1bhj93qfyvfryp9l"; depends=[Epi Formula formula_tools Matrix numDeriv orthogonalsplinebasis R_utils statmod survival]; }; + flexsiteboard = derive2 { name="flexsiteboard"; version="0.0.7"; sha256="0msbz3x7lsi6xcw8dcqzwnylaj76f8mgj6cf3hqscrfjzhs86rym"; depends=[flexdashboard htmltools htmlwidgets jsonlite knitr rmarkdown yaml]; }; flexsurv = derive2 { name="flexsurv"; version="2.2"; sha256="0244amsyf2izih6008n2535r3ddksgdnys8pyslrcb1c09spmjrw"; depends=[assertthat deSolve dplyr generics ggplot2 magrittr Matrix mstate muhaz mvtnorm numDeriv purrr quadprog Rcpp rlang rstpm2 statmod survival tibble tidyr tidyselect]; }; - flexsurvcure = derive2 { name="flexsurvcure"; version="1.3.0"; sha256="0zbbjfc8inqwhafb8202djy05h577qjy2xrkbkjy2kcfj8lvqps2"; depends=[boot flexsurv survival]; }; - flextable = derive2 { name="flextable"; version="0.8.2"; sha256="054rkx98qhwp8i4fj9jkv5297sc4g193wfs6b537q62iyqmcjlx3"; depends=[base64enc data_table gdtools htmltools knitr officer rlang rmarkdown uuid xml2]; }; + flexsurvcure = derive2 { name="flexsurvcure"; version="1.3.1"; sha256="0mhpzcrqxsi7f2m565qy648vg26rsvy7d249ia7y7kd5wcildw8b"; depends=[boot flexsurv survival]; }; + flextable = derive2 { name="flextable"; version="0.8.3"; sha256="0fqc0zq1w7fdnql2m96g0rpichfpwrhyinnld29ddaw0d742gfj5"; depends=[base64enc data_table gdtools htmltools knitr officer rlang rmarkdown uuid xml2]; }; flifo = derive2 { name="flifo"; version="0.1.5"; sha256="03x66l3ryrjvwbxxd0ncjrb5w9kc7fswmp5psb1cb7r87f395gm3"; depends=[bazar pryr]; }; flightplot = derive2 { name="flightplot"; version="0.1.0"; sha256="1276lsahr9kdsvp1ismm3b5syvhfr7ifizzd79f8w1h2rjblva8x"; depends=[dplyr geosphere ggplot2 ggrepel magrittr rlang sf tibble]; }; - flightsbr = derive2 { name="flightsbr"; version="0.2.0"; sha256="16cn3m73pd2lp6p5ixswxjdbzwj6hq60jwzymp3r30rwzcqrh4wh"; depends=[data_table httr parzer pbapply rvest]; }; - flimo = derive2 { name="flimo"; version="0.1.2"; sha256="0a7azwrxfwj66672s1rpvp1nqkbd9g7gyppkzf779yg0phisva8w"; depends=[ggplot2 gridExtra JuliaConnectoR latex2exp]; }; + flightsbr = derive2 { name="flightsbr"; version="0.2.1"; sha256="10bsfn7a8zzsrf2fr9svsfx50dv1vlivq8dd82yn18i1vf1hzaib"; depends=[data_table httr parzer pbapply rvest]; }; + flimo = derive2 { name="flimo"; version="0.1.3"; sha256="0xgxbcik40fjqzz55wraljcp8j1pvhm5zzgin7l50xk24yyiyvrh"; depends=[ggplot2 JuliaConnectoR]; }; flintyR = derive2 { name="flintyR"; version="0.0.2"; sha256="13bzglcwd4r6q8ix8diy2dljns722k29zbd782fvkxc59ikx7dja"; depends=[assertthat doParallel foreach Rcpp RcppArmadillo testthat]; }; flip = derive2 { name="flip"; version="2.5.0"; sha256="08x5hwxaxbgc745gblja7gcy0b5wbp7jf90lkha75zl5cc9iyksl"; depends=[cherry e1071 plyr someMTP]; }; flipbookr = derive2 { name="flipbookr"; version="0.1.0"; sha256="0ls51risk3qn5fagw31i2kibrxk7xk3845a1cccd83sc4c8ilgjx"; depends=[dplyr glue knitr magrittr purrr rmarkdown stringi stringr tibble tidyr]; }; @@ -9304,14 +9359,13 @@ in with self; { fmpcloudr = derive2 { name="fmpcloudr"; version="0.1.5"; sha256="07fvmrprv0pka1wgp5ygcvv86jvn3h30xxkx44ssin15hfmank69"; depends=[dplyr httr jsonlite lubridate magrittr tidyr]; }; fmri = derive2 { name="fmri"; version="1.9.6"; sha256="1wh77xwpm8f9d9vky3r7vfmkik3hls008ifk8hkm2rq6i06jj53n"; depends=[aws metafor nlme]; }; fmriqa = derive2 { name="fmriqa"; version="0.3.0"; sha256="1z09nf1c305a78c129jvs21b9z91wyhazz41wrn4bimmhfhx7szv"; depends=[ggplot2 gridExtra imager optparse pracma RcppEigen reshape2 RNifti tidyr viridisLite]; }; - fmsb = derive2 { name="fmsb"; version="0.7.3"; sha256="1gi94xr0b1yk9xzwfprfafxi25yic1lcivd66p73n6iqfzdaimbk"; depends=[]; }; + fmsb = derive2 { name="fmsb"; version="0.7.4"; sha256="1rmmvx38rmamiw0ajqhlksgxj6fgm8ymq903yxqq2bzxx8fhj5n2"; depends=[]; }; fmt = derive2 { name="fmt"; version="2.0"; sha256="04df84979a8vaacfhxsb58zci1mmh113ir7qnkniv5qnyvdabacm"; depends=[limma]; }; fmtr = derive2 { name="fmtr"; version="1.5.9"; sha256="0n62jrbxpb82d6rnbf6qxi8971cn0ywfl43r1d47j6dmjbl0dhq8"; depends=[common crayon Rcpp tibble]; }; focusedMDS = derive2 { name="focusedMDS"; version="1.3.3"; sha256="18s86dbbpyajscqr9frprf2vp1zif7vh4lw5m0cjskfc6gmsdp2p"; depends=[htmlwidgets]; }; foghorn = derive2 { name="foghorn"; version="1.5.1"; sha256="0fbr38hxl2qwr1pbvbwwnkr9dk8saq13w0ld6waky70g7k7va8m4"; depends=[clisymbols crayon curl httr2 rlang rvest tibble xml2]; }; - foieGras = derive2 { name="foieGras"; version="0.7-6"; sha256="0g4c9id7q3jgjcgwmncp4bkw9njwb41cp6ycv7psiidkhmnzi03d"; depends=[assertthat CircStats dplyr furrr future ggplot2 lifecycle lubridate mvtnorm patchwork purrr RcppEigen sf stringr tibble tidyr TMB tmvtnorm trip]; }; folderfun = derive2 { name="folderfun"; version="0.1.4"; sha256="0rns8590r1897lj0gyrlj0zbaxjw2gjaxwnwdxiiw2kvyq7mjkis"; depends=[]; }; - folio = derive2 { name="folio"; version="1.2.0"; sha256="1d5xf0bhzmmh7n9rsysbp4cxipcxplmlj154lrnbwzic5jmjn80m"; depends=[]; }; + folio = derive2 { name="folio"; version="1.3.0"; sha256="1jkix4hjb6whv1bz8gjrclwlsc415vccvldvi5l998r0bsnbm04c"; depends=[]; }; fomantic_plus = derive2 { name="fomantic.plus"; version="0.1.0"; sha256="0zj50v036zal51b7744bp62c1bzjwdvzw1qwy0lyhgjxly6kb2hy"; depends=[htmltools jsonlite shiny shiny_semantic]; }; fontBitstreamVera = derive2 { name="fontBitstreamVera"; version="0.1.1"; sha256="0nipdlmhjv1wr3aidcl97nk6mppdkd65krgwqnhdsnv0jpfv761j"; depends=[]; }; fontLiberation = derive2 { name="fontLiberation"; version="0.1.0"; sha256="1w1rl0g4ayyp8lwppmz9yzj9cizg7i50g07216jkm1q5w0is9pmc"; depends=[]; }; @@ -9330,13 +9384,13 @@ in with self; { forceR = derive2 { name="forceR"; version="1.0.15"; sha256="025kpa5mnv336b1ghxdilw4kc0razgvjvlc5k5r435zi6gf4ny7w"; depends=[dplyr filesstrings magrittr purrr readr roll stringr]; }; foreSIGHT = derive2 { name="foreSIGHT"; version="1.1.0"; sha256="0a018hc8pavb8sqizc5922gmiwsdlq3hgwkx29pzpajjlhrybgpj"; depends=[cowplot directlabels doParallel fields GA ggplot2 jsonlite lattice moments mvtnorm progress RColorBrewer rcorpora Rcpp rlang scales viridisLite]; }; foreach = derive2 { name="foreach"; version="1.5.2"; sha256="1r5gdf9fp3rprvrhf0gzl9qmmqhgdn5gscpm5hk8zxpraf3qscsn"; depends=[codetools iterators]; }; - forecTheta = derive2 { name="forecTheta"; version="2.2"; sha256="1a7ip3czm8k82kb8dx95m8q47kjhifdj51gzavd1zj9ni3vwbhfn"; depends=[forecast tseries]; }; - forecast = derive2 { name="forecast"; version="8.18"; sha256="1pfq2b1ppkbg3a9bag4jrfsjclf0c7mdqbhf1l08h6fqv6lbl82r"; depends=[colorspace fracdiff generics ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries urca zoo]; }; + forecTheta = derive2 { name="forecTheta"; version="2.6.2"; sha256="0xw5xl6famx0wy68a32f8vgqk02lkymvxq082yp16giidvzvqjwd"; depends=[forecast tseries]; }; + forecast = derive2 { name="forecast"; version="8.19"; sha256="1l3mdldghsf319fh8gx81w8f5i5mnrcn70rjjylzk4j8n7gicpih"; depends=[colorspace fracdiff generics ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries urca zoo]; }; forecastHybrid = derive2 { name="forecastHybrid"; version="5.0.19"; sha256="1pg3wbmlagr01j3nikfh4dvh5lvbdfp7069wx9h9xsl7d4481ly1"; depends=[doParallel foreach forecast ggplot2 purrr thief zoo]; }; forecastML = derive2 { name="forecastML"; version="0.9.0"; sha256="01lqbmdmd6sk5xka19i9d466bzihxgp652v0kr13r82b591f67vq"; depends=[data_table dplyr dtplyr future_apply ggplot2 lubridate magrittr purrr rlang tibble tidyr]; }; forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.3-0"; sha256="0p47x7ic2ib7znqbp8br4b2ci75f5w8x413z9g4n30m002p7irp1"; depends=[Rcpp]; }; forecasteR = derive2 { name="forecasteR"; version="1.1.6"; sha256="1lqlmiwr34rim50y9vxinf23xi9gj0y6p1y1wp3vlfycdkd0lca5"; depends=[colourpicker config DT echarts4r forecast golem htmltools htmlwidgets lubridate rlang scales shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs stringr]; }; - foreign = derive2 { name="foreign"; version="0.8-83"; sha256="06vj61h52idbjbgmbd6ml9541q3vr38j2gjvlkqbqsqbg0zygsl7"; depends=[]; }; + foreign = derive2 { name="foreign"; version="0.8-84"; sha256="0jc5r5wiqqbkni2xjdd24hic1xvfi151m9lnqhni52jnqw1g7v8p"; depends=[]; }; forestControl = derive2 { name="forestControl"; version="0.2.2"; sha256="0g81ml12xhq2a868vlpsybpsqz7p4hn9jnxh3dvq6g4k1hc1292x"; depends=[dplyr magrittr purrr Rcpp tibble]; }; forestError = derive2 { name="forestError"; version="1.1.0"; sha256="1dk19sgx760ph464cya4gxb1i3rpnydnhrbqyb25jja0dryjapcm"; depends=[data_table purrr]; }; forestHES = derive2 { name="forestHES"; version="1.0-1"; sha256="05l04ly3l8xkdz3rnnrfa4y0wfmh1am2ixbz1vfarnqkc0zppwpj"; depends=[]; }; @@ -9345,13 +9399,14 @@ in with self; { forestinventory = derive2 { name="forestinventory"; version="1.0.0"; sha256="1v5gyx8i64zn1cinwvm86syq26vhfzw2maaiymy32fphzybwxivf"; depends=[ggplot2 plyr tidyr]; }; forestmangr = derive2 { name="forestmangr"; version="0.9.4"; sha256="1zlp7lnawbfqw60552cwnh280spqj7p2qvn2xwz5y7wly2d7d4fm"; depends=[broom car dplyr FinCal ggdendro ggplot2 ggpmisc ggthemes gridExtra magrittr miniUI minpack_lm plyr purrr rlang scales shiny systemfit tibble tidyr]; }; forestmodel = derive2 { name="forestmodel"; version="0.6.2"; sha256="0pl9r8j2qd00b9kl585b4k54kic5fvzc56i8cn3hm5yp2hrrwyws"; depends=[broom dplyr ggplot2 rlang tibble]; }; - forestplot = derive2 { name="forestplot"; version="3.1.0"; sha256="0xk30mpb87sab2afnk2j474qjjf4j6x1ifh9j5n7w690f481iqqb"; depends=[abind checkmate]; }; - forestploter = derive2 { name="forestploter"; version="0.2.2"; sha256="0gmcmjr8r4xklzqdx2i2aimmwas50v6g7lmib3v5xxlq8rfxm0ad"; depends=[gridExtra gtable]; }; + forestplot = derive2 { name="forestplot"; version="3.1.1"; sha256="0jf7sl7z963r92l5r2irvnakmbmx554vbprg51smj6qns5a6dfcj"; depends=[abind checkmate]; }; + forestploter = derive2 { name="forestploter"; version="0.2.3"; sha256="1x63sz8diw2agyxkmhr2li29vz0x8j9v8v9y14v8qsmh5gfnwska"; depends=[gridExtra gtable]; }; forestr = derive2 { name="forestr"; version="2.0.2"; sha256="1kz8f3x2dmsprj2r23gz61fpwg7n14nbjxr16x4cpixvnk427p94"; depends=[dplyr ggplot2 moments plyr tibble tidyr viridis]; }; forestry = derive2 { name="forestry"; version="0.1.0"; sha256="0q7m0mrig8z2b2z2fng58qlqa6g58xlhfzchil2dvjh6xf3qvsh8"; depends=[data_tree]; }; foretell = derive2 { name="foretell"; version="0.2.0"; sha256="18vi438n480gizfhnciw67gngvbjnmky19186b1wy75av7fgc1gp"; depends=[nloptr]; }; forge = derive2 { name="forge"; version="0.2.0"; sha256="0pjfzsc35agkh0zfw2czwajkbsyn6liys5irl5bhz5r1vim3jmwa"; depends=[magrittr rlang]; }; formatR = derive2 { name="formatR"; version="1.12"; sha256="12wch1774113nlrc0lihfn5rbh4hln9sg6dv6zc2bvyb8fzyyllb"; depends=[]; }; + formatdown = derive2 { name="formatdown"; version="0.1.1"; sha256="0hfpn7j8svv9yj1zpbszl79xshyi7kc20vv3kmp0z0r0lnv89vpg"; depends=[checkmate data_table wrapr]; }; formattable = derive2 { name="formattable"; version="0.2.1"; sha256="1vdxi0xmg019qyzjrp8bkjxciz245jcxsrkhfzd44ynqcwi4s3ag"; depends=[htmltools htmlwidgets knitr rmarkdown]; }; formatters = derive2 { name="formatters"; version="0.3.2"; sha256="0fq7ygy1dbz2ncb2f979dfajlcbzrwljn6qkfx0rjvl1vwcvi9hk"; depends=[htmltools]; }; formula_tools = derive2 { name="formula.tools"; version="1.7.1"; sha256="15d3ikfmsh9zszfgfkrxb3jkipl41inm7n6bhs73kwlnklnygq2g"; depends=[operator_tools]; }; @@ -9385,7 +9440,7 @@ in with self; { fpp3 = derive2 { name="fpp3"; version="0.4.0"; sha256="1920hlckc1bvdhqrp6mdl900c34k62v87k5l22zwwycx5gcicrxh"; depends=[cli crayon dplyr fable fabletools feasts ggplot2 lubridate magrittr purrr rstudioapi tibble tidyr tsibble tsibbledata urca]; }; fptdApprox = derive2 { name="fptdApprox"; version="2.4"; sha256="0ql52rx5wc7h5vxl567i065lmj4ygai3xpjwp7qrndl16x1j4k9l"; depends=[]; }; fqar = derive2 { name="fqar"; version="0.2.1"; sha256="1db96y5gisrkw1wzsbq7lw5ghly6jbga054n7xkn4rk0kvvb3a6b"; depends=[dplyr httr jsonlite rlang tidyr]; }; - fracdiff = derive2 { name="fracdiff"; version="1.5-1"; sha256="1dhfjlhr9sb38qgpsx0sm73l9lgc13d0fk32l7fmjfnalhr3n45q"; depends=[]; }; + fracdiff = derive2 { name="fracdiff"; version="1.5-2"; sha256="0dzl011c92skf7hmx1zvdwsrashmfkxy9p2wig35nzr8609qhpxc"; depends=[]; }; fracdist = derive2 { name="fracdist"; version="0.1.1"; sha256="0ssg8h1mvkzpwq4dn9fdxjg1vzhcv6606wsy0xrm1wz9p6s5rx74"; depends=[]; }; fracprolif = derive2 { name="fracprolif"; version="1.0.7"; sha256="124p5x59smqf8ba0xwhlq69w77zga2bv9plzwkadf700lzvaj2wx"; depends=[emg numDeriv]; }; fractD = derive2 { name="fractD"; version="0.1.0"; sha256="1cnp8qrc6jpdj0grwkvn5jkdymjfhg5ybbhqvknxirc4g981q8bj"; depends=[imager plyr]; }; @@ -9405,7 +9460,7 @@ in with self; { frechet = derive2 { name="frechet"; version="0.2.0"; sha256="1006mgy9avwkwy0666maac59xp4j27wq5yy3pwc3h1r05myxw379"; depends=[corrplot fdadensity fdapace Matrix osqp pracma]; }; fredr = derive2 { name="fredr"; version="2.1.0"; sha256="0073qh0drf1p38hc84m54n35hyza90m8zn48ihx3alxkiq1m8ijp"; depends=[httr jsonlite rlang tibble]; }; free = derive2 { name="free"; version="1.0.1"; sha256="0r9vd1d4pi19mnvdchx95axp0hiqs8lpgp0fn40dm89h5fd6zyb0"; depends=[Rcpp RcppArmadillo]; }; - freealg = derive2 { name="freealg"; version="1.0-8"; sha256="1mpqda4xk3hkr24a47kg8jzd23y7svvs5pcfgbhlmvpchsgxqzsd"; depends=[disordR mathjaxr partitions Rcpp]; }; + freealg = derive2 { name="freealg"; version="1.1-0"; sha256="10xc8d4ymx53hifmji3ag0svxpp833vndiylsrk5brhv9rg8wfb5"; depends=[disordR mathjaxr partitions Rcpp]; }; freebird = derive2 { name="freebird"; version="1.0"; sha256="1rxn4xdp801sng3dzfwm7j001igkn51qx2kc4bcpbczdhb43bzaw"; depends=[MASS Matrix Rmosek scalreg]; }; freedom = derive2 { name="freedom"; version="1.0.1"; sha256="1mrdl2cqdm2c68lx7lyixgiqw6xzwnx9c8j5q4annhiz107i9i22"; depends=[]; }; freegroup = derive2 { name="freegroup"; version="1.1-3"; sha256="11v0ph0mhk8g9zwapcp2wgr1sbdwdqh7nhbrci87myapypdncqjc"; depends=[magic magrittr plyr]; }; @@ -9425,7 +9480,7 @@ in with self; { frequentistSSD = derive2 { name="frequentistSSD"; version="0.1.1"; sha256="1d54zr87795gm4qc6aw3nv9i83rhnhv14rcpkrivdxhxv8rnhnn9"; depends=[survival]; }; fresh = derive2 { name="fresh"; version="0.2.0"; sha256="1787mm6w2s5x9scxy7r9cb77rgpmy4ngwkn4z8g3gs48mrab4bd9"; depends=[htmltools rstudioapi sass shiny]; }; freshr = derive2 { name="freshr"; version="1.0.2"; sha256="1vzwdy5cssk9r3fvw0w1pxkn203whzycmvz9fdm08lkd538zwdnj"; depends=[]; }; - frictionless = derive2 { name="frictionless"; version="1.0.1"; sha256="0risjx7ahs2ysqfrlvyb88ab2r6wsfqsz4yiyac02j52lmgxncp4"; depends=[assertthat dplyr glue httr jsonlite purrr readr yaml]; }; + frictionless = derive2 { name="frictionless"; version="1.0.2"; sha256="0821j53jnkak4nfzqyqrm07qz79laxvwsx78bbn4y1765awyxvaw"; depends=[assertthat dplyr glue httr jsonlite purrr readr yaml]; }; friends = derive2 { name="friends"; version="0.1.0"; sha256="164p9g07vq3xs2lgg250yvzca4b0mp81pqbnjfdkzcqh5hmahsan"; depends=[tibble]; }; frmhet = derive2 { name="frmhet"; version="1.1.3"; sha256="07sgsfhzrci8g1b0gicjfca1mgd8ppfqpkpp4q9bdxnjvdvlf45s"; depends=[]; }; frmpd = derive2 { name="frmpd"; version="1.1.0"; sha256="0irgqdr0vr8k408lsxcrjkjbjvqvmy5mnjw9c1ghs86isrp5mciz"; depends=[]; }; @@ -9459,6 +9514,7 @@ in with self; { fuel = derive2 { name="fuel"; version="1.2.0"; sha256="0pzb77g6l8cz5p7y6czck23kp7hs5zp78k87b5yh0avjlr7ads74"; depends=[]; }; fueleconomy = derive2 { name="fueleconomy"; version="1.0.0"; sha256="16a8wyliiidi6rw14ksimygfkl4a7yhxvss7l9bcvr1wfiplrn65"; depends=[]; }; fugue = derive2 { name="fugue"; version="0.1.7"; sha256="1myvi9cizxvahb6wn2k26v3x958xsrm2p414ar05injmfjdfnsmi"; depends=[]; }; + fuj = derive2 { name="fuj"; version="0.1.1"; sha256="14q2qzvpapm1qi5r0dqcw47ngakl2ppd5zmx2lalqwvi012xh25b"; depends=[]; }; fullROC = derive2 { name="fullROC"; version="0.1.0"; sha256="0pn4lh59snfcyyi28350lm4n9xh6y25hpjr38dc33bic4cfbqiyr"; depends=[]; }; fullfact = derive2 { name="fullfact"; version="1.5"; sha256="1p2f4rf54hd0icy49fkq6p973rqisjjmmr1brwcv0fg22nv2kidg"; depends=[afex lme4]; }; fun = derive2 { name="fun"; version="0.3"; sha256="09601ma4irmpkgjspq6zmr383m1pbgyfdkf7gw8w8gp0q7ab89aq"; depends=[]; }; @@ -9474,9 +9530,10 @@ in with self; { functClust = derive2 { name="functClust"; version="0.1.6"; sha256="0mdfxvrx3wk497a9bbkwnzbm6hm2s4wqs3h09m3hj48ybpqmhz9i"; depends=[clusterCrit multcompView]; }; functional = derive2 { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; }; functiondepends = derive2 { name="functiondepends"; version="0.2.3"; sha256="0p831i8l81dbrncmr69024gm5g14p0xiv7li0ljdlqnrbc0fj64n"; depends=[dplyr magrittr purrr stringr tibble tidyr tidyselect]; }; - fundiversity = derive2 { name="fundiversity"; version="1.0.0"; sha256="1vkr955rl7ws1ypf6lpwx4pbqjhdqkvg6i3ca8q03ym4hdmcr0yz"; depends=[future_apply geometry Matrix vegan]; }; + fundiversity = derive2 { name="fundiversity"; version="1.1.1"; sha256="1wp2v7bd1vc8gs9g41s77pazkrv3mdw2m3pgjr7k6wdch0a9qhx2"; depends=[future_apply geometry Matrix vegan]; }; fungible = derive2 { name="fungible"; version="2.2.2"; sha256="1y90vlszrir2lmvp9nnnj7nqj6a03x03fmdypagzvsszqkdsr7db"; depends=[clue CVXR DEoptim GPArotation lattice MASS mvtnorm nleqslv pbmcapply Rcsdp RSpectra]; }; funique = derive2 { name="funique"; version="0.0.1"; sha256="0p9k4nxjns1xid9vmslkaap0hm6yq6pbyvylgygd808if4q1z8k6"; depends=[]; }; + funkyheatmap = derive2 { name="funkyheatmap"; version="0.1.0"; sha256="0q5cfn7k0rh8694sldichvakqq4mxbfsya610dzn07q8jlri6ax5"; depends=[assertthat cli cowplot dplyr dynutils ggforce ggplot2 purrr RColorBrewer stringr tibble tidyr]; }; funmediation = derive2 { name="funmediation"; version="1.0.1"; sha256="1h4jic73f7ywk2g1mkg188q0bq6x8sn9sm7jhr8gvrnmh167ajw7"; depends=[boot refund tvem]; }; funnelR = derive2 { name="funnelR"; version="0.1.0"; sha256="143lb048krgh8rkkz6sm8h464kdy62w29fvvyar795vqi10bb5fy"; depends=[ggplot2]; }; funneljoin = derive2 { name="funneljoin"; version="0.1.0"; sha256="17g1mvq9z5m29r0v2r2nn8980j515jamnpwvvnzj83vk84bz94rq"; depends=[broom dplyr glue magrittr purrr rlang tibble tidyr]; }; @@ -9494,28 +9551,26 @@ in with self; { futile_logger = derive2 { name="futile.logger"; version="1.4.3"; sha256="1r3nayk0z9n1svbf8640vw90dal5q07nkn0gv4bnva3pbzb352sy"; depends=[futile_options lambda_r]; }; futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; }; futility = derive2 { name="futility"; version="0.4"; sha256="0zjb87brz7pkx3nq3q30y69cmcxpqqsra447p60qh7005kgr9vx4"; depends=[]; }; - future = derive2 { name="future"; version="1.28.0"; sha256="1xhv0nf97yxxxsmxczyqqbnb4yn5sfn5vzvhm9dmw9csrmmadpbg"; depends=[digest globals listenv parallelly]; }; - future_apply = derive2 { name="future.apply"; version="1.9.1"; sha256="0cr141mamjxby79sww02493yal9lahslvp3a3ic7f856rbawq8jg"; depends=[future globals]; }; + future = derive2 { name="future"; version="1.29.0"; sha256="0ws3jp82qjpnvgn5xrxdq7hg7r97rkylj329f9jqr69g3paiyvc5"; depends=[digest globals listenv parallelly]; }; + future_apply = derive2 { name="future.apply"; version="1.10.0"; sha256="1all7ri4nsjxfakw8pssif22j33ch1nhw3sc0raqrzhj93c2vsfy"; depends=[future globals]; }; future_batchtools = derive2 { name="future.batchtools"; version="0.10.0"; sha256="1ly98h2g7wpfxp2r8vl1hy7wqqgwgawjagz0m2iczjmcj4ix6avk"; depends=[batchtools future]; }; future_callr = derive2 { name="future.callr"; version="0.8.0"; sha256="1nhkmxaaii647gizrxa8zj1iakivml7zrqi4bvvs5yshc7m9slg9"; depends=[callr future]; }; - future_tests = derive2 { name="future.tests"; version="0.3.0"; sha256="1ssr0sd9h10151m5iaad17zqii7d18nnszq2svj0i8izk83xhrik"; depends=[cli crayon future prettyunits sessioninfo]; }; + future_tests = derive2 { name="future.tests"; version="0.4.0"; sha256="1knm3zxc61g6xgvp2wws405jp7ygva8nzqm9q8cvxdl7fk2l9q0a"; depends=[cli crayon future prettyunits sessioninfo]; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; fuzzr = derive2 { name="fuzzr"; version="0.2.2"; sha256="1cwq7a5j6lzrlz9dw3hsfap988rh1kkgf03yni7c33zl69xp5w77"; depends=[assertthat progress purrr]; }; fuzzyRankTests = derive2 { name="fuzzyRankTests"; version="0.4"; sha256="04841fh4nf7qriqk0b2ny943bji60bj42j8czg056d2dza4q4039"; depends=[]; }; - fuzzySim = derive2 { name="fuzzySim"; version="4.3"; sha256="1dzjl8d9kal4rvlgb0y5jdmakgnhgzpmzqpbac50qq5zqc34462c"; depends=[modEvA]; }; + fuzzySim = derive2 { name="fuzzySim"; version="4.9.2"; sha256="1l6mmpla0azayqsyqdlrgb40fr5vnmy82wl6a54qwinnz7vghmdn"; depends=[modEvA]; }; fuzzyforest = derive2 { name="fuzzyforest"; version="1.0.8"; sha256="0sb7qia01a5h6p12riq6vdq9likmqb6i949axsxszy5sf1zk50v5"; depends=[doParallel foreach ggplot2 mvtnorm randomForest]; }; fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.6"; sha256="0s5rhqz8vih4za3a8k1k7i3gq8hj0w7bqnakw40k6mg87jvyzsj7"; depends=[dplyr geosphere purrr stringdist stringr tibble tidyr]; }; fuzzyreg = derive2 { name="fuzzyreg"; version="0.6"; sha256="1v100flbnw3mjmakgswj0zfla2rm0s0vpg8w8v7j1lr9sfjz4s7c"; depends=[limSolve quadprog]; }; fuzzywuzzyR = derive2 { name="fuzzywuzzyR"; version="1.0.5"; sha256="1g73xivxyh5fvppccgnxhgar6jsl6zsr2djkg0bhh10i633l56ia"; depends=[R6 reticulate]; }; fwb = derive2 { name="fwb"; version="0.1.1"; sha256="0hgbzmlbj1hhckpxv9zhchk8x8lq0ahcpvhcyibybkwxydii3dd4"; depends=[chk pbapply rlang]; }; fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; }; - fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.12"; sha256="08rcyqh0nwpjjybks05klpb3ghry5n2652y5vxz7f5wdvlzjkhwz"; depends=[collapse dqrng dreamerr Formula generics gtools JuliaConnectoR MASS Matrix Rcpp RcppArmadillo RcppEigen summclust]; }; fwsim = derive2 { name="fwsim"; version="0.3.4"; sha256="0fy87c1x5hihfcppv1pvk3b0pwl6ygqpka40x55gbpkgssdigb1l"; depends=[Rcpp]; }; - fxTWAPLS = derive2 { name="fxTWAPLS"; version="0.1.1"; sha256="1c3zdzyh8dz0vmbvd6942az95wqwrg70yr6xqsd7014p119dklb0"; depends=[doFuture foreach future geosphere ggplot2 JOPS MASS progressr]; }; + fxTWAPLS = derive2 { name="fxTWAPLS"; version="0.1.2"; sha256="1bxrwkf65qw3k6mqvp27lqw6i2r7bdbilnl9406k1nva353gcxxm"; depends=[doFuture foreach future geosphere ggplot2 JOPS MASS progressr]; }; fxregime = derive2 { name="fxregime"; version="1.0-4"; sha256="0ml1q0xp90jfng6a60pfkp6j7wajk6pz4p4wm08rfqikgsdvp0m4"; depends=[car sandwich strucchange zoo]; }; fy = derive2 { name="fy"; version="0.3.0"; sha256="13803ld4b59ly5h3zlianag9901jyw6p70bsyz5dj7k62hg7ha3s"; depends=[data_table fastmatch hutils]; }; g_data = derive2 { name="g.data"; version="2.4"; sha256="14a4m0v38p3j1k1kymkxwydlgm8b73hlx9m80sg1l4aj38fvflzl"; depends=[]; }; - g2f = derive2 { name="g2f"; version="0.2"; sha256="1jsmiv6v8ilpxg1k1npcgqa467hpyw7mzh5m8dp7bxar4j5npsp4"; depends=[KEGGREST minval sybil]; }; g3viz = derive2 { name="g3viz"; version="1.1.5"; sha256="0pjn1rgqbrkbdrcnf01j9lm3257fnp7b0p5p3hyhg8srd990wp61"; depends=[cBioPortalData htmlwidgets jsonlite stringr]; }; gCat = derive2 { name="gCat"; version="0.2"; sha256="0n1x039a0pm4sz2rwsgq82n423zgp4xni69129dh3nvxfrc0hzc5"; depends=[]; }; gDefrag = derive2 { name="gDefrag"; version="0.3"; sha256="016vpj03drygxsa06jin225rfgjvjm938x65990ms15xcwrgv8nb"; depends=[igraph maptools rgdal rgeos sp]; }; @@ -9525,10 +9580,9 @@ in with self; { gMCP = derive2 { name="gMCP"; version="0.8-15"; sha256="01048j9489rrhv9syqrbw4c5i5gsll41ysm27awxw6l1rshbqsqn"; depends=[CommonJavaJars JavaGD MASS Matrix multcomp mvtnorm PolynomF rJava xlsxjars]; }; gMCPLite = derive2 { name="gMCPLite"; version="0.1.2"; sha256="1vaqwbj64m7xvr9vhpy0vb3l88sp1cbnpnxvw20ma62qvrayk2yn"; depends=[ggplot2 MASS mvtnorm]; }; gMOIP = derive2 { name="gMOIP"; version="1.4.7"; sha256="1qg0ba3crky35l9qlcqg37bzrr9ilh8df1y110r2pqnkdns7ikj6"; depends=[dplyr geometry ggplot2 ggrepel MASS Matrix plyr png purrr Rfast rgl rlang sp tibble tidyr tidyselect]; }; - gMWT = derive2 { name="gMWT"; version="1.2"; sha256="0gy8mm6ajbd2nl059nrb24wkh06qbbbg2h8m6fl58n5wgsjns1va"; depends=[clinfun Rcpp RcppArmadillo]; }; gProfileR = derive2 { name="gProfileR"; version="0.7.0"; sha256="1h1v0kgpsn04ald2izznh7fr2riwisj5hcgz4k7h3qc931rf0r4k"; depends=[plyr RCurl]; }; - gRain = derive2 { name="gRain"; version="1.3.11"; sha256="1knaa410rkx88aphjxd64mn6z83r7fdiny4vdgdnhk3vsqcc0swh"; depends=[graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; - gRbase = derive2 { name="gRbase"; version="1.8.8"; sha256="1nzrmi0sy1jv565csl04nj80mrhh59jrl3115fyyhx6vib5d3mgx"; depends=[BiocManager graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; + gRain = derive2 { name="gRain"; version="1.3.12"; sha256="0l4wrbsjzkv3fhvkwc0pxccqcc3d6vkx2qgayiqgrq90nc458fhr"; depends=[broom graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; + gRbase = derive2 { name="gRbase"; version="1.8.9"; sha256="0zix34w60l94qsfh6gxw9qf4l564fmml9s4nc4y5kr4nv11b9jns"; depends=[BiocManager graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gRc = derive2 { name="gRc"; version="0.4.4"; sha256="0p1m816al9djv5fhzgsgrbbbcpx5c5wjxvxwni6gs2cwxbxmdvcp"; depends=[gRbase magrittr MASS Rcpp RcppArmadillo]; }; gRim = derive2 { name="gRim"; version="0.2.10"; sha256="1h5fds5paqg0bxdpbk6cz2wclw9sbwaw08zrp7dxims0n5fcc8zp"; depends=[gRain graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gSEM = derive2 { name="gSEM"; version="0.4.3.4"; sha256="18kh41ibvfflz59gykiq7j2c6a72i8b0w8c2mcprd1nzhnyhvmhy"; depends=[DiagrammeR htmlwidgets knitr MASS]; }; @@ -9539,7 +9593,8 @@ in with self; { gWQS = derive2 { name="gWQS"; version="3.0.4"; sha256="1yhbcmznii3n2sbw0z2rw1sdn0zlk5v2z7ww3nl7rn005g4q04hi"; depends=[broom cowplot dplyr future future_apply ggplot2 ggrepel kableExtra knitr MASS Matrix nnet plotROC pscl reshape2 rlist]; }; gWidgets2 = derive2 { name="gWidgets2"; version="1.0-9"; sha256="1ifljpdazzmwf3mgkg9g76365n2cmw8dd3da161fpvw84xxyznfl"; depends=[digest]; }; gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-8"; sha256="02ic4avpa33dnqsnm1mzg7ci1psngk1p169pqf259szf6v39qf8h"; depends=[digest gWidgets2 memoise]; }; - gadget2 = derive2 { name="gadget2"; version="2.3.7"; sha256="1p7jpwy65gdl6kli1h2m9yi5p5ah1vm23xs03sm9l42fcbn7ffdw"; depends=[]; }; + gadget2 = derive2 { name="gadget2"; version="2.3.9"; sha256="1cha4n0bd1imlvpzsgd337p0my75kakjsxdmmgx8p519r2dl07vz"; depends=[]; }; + gadget3 = derive2 { name="gadget3"; version="0.8-4"; sha256="12s91c0wy0xvy5f89w05rsa8299hbywsp98z0a14l8s18dbgwfrf"; depends=[digest Matrix rlang TMB]; }; gafit = derive2 { name="gafit"; version="0.5.1"; sha256="160z3cv22prf7118447dla9g1gimwkfad8zdil3fg8n4l22rk51a"; depends=[]; }; gaiah = derive2 { name="gaiah"; version="0.0.4"; sha256="1ibsbmmpagr7ix1c3bszrglqx95w44qyfy80vcq3w2dprs8vrrw6"; depends=[dplyr geosphere magrittr maptools raster rlang sp]; }; gainML = derive2 { name="gainML"; version="0.1.0"; sha256="1mqhrdjdmc2n7dxilxkqn6xq7z0qnxpigw5bbffnjvvsmdamah0n"; depends=[fields FNN]; }; @@ -9548,7 +9603,7 @@ in with self; { galigor = derive2 { name="galigor"; version="0.2.5"; sha256="1lfw1kikf90nv9g0xrb656fbilmxdk64zrzi43wrz7y2y55sd5xv"; depends=[cli crayon dplyr gargle getProxy magrittr purrr rappsflyer rfacebookstat rgoogleads rmytarget rstudioapi rvkstat ryandexdirect rym tibble tidyr]; }; galts = derive2 { name="galts"; version="1.3.1"; sha256="0jg0yng1kc6s0qdhq8ps38dsxdcrgdcn8dl2dlclw6rcbknb6h4k"; depends=[DEoptim genalg]; }; galvanizer = derive2 { name="galvanizer"; version="0.5.3"; sha256="1b9431mmgpqyd49b8nlsrlxjq9j9fyj73226bi9jic1p867533kk"; depends=[dplyr httr jsonlite lubridate magrittr rlang tibble tidyjson tidyr tidyselect]; }; - gam = derive2 { name="gam"; version="1.20.2"; sha256="1ndgnaq5fk1w6l6z93w5gd22887yxkykrchbdbx366qmz8v8wcyg"; depends=[foreach]; }; + gam = derive2 { name="gam"; version="1.22"; sha256="0gyrg73f63ccars1639n0gv6cnh8ixp7p7lgdxb2yjl240lk0c9i"; depends=[foreach]; }; gamCopula = derive2 { name="gamCopula"; version="0.0-7"; sha256="0zi9g2vxkn1hxc2qyyr1x8p1f9w7fc1j5dmm2mmm333gixkkz9nb"; depends=[copula doParallel foreach gsl igraph MASS mgcv numDeriv VineCopula]; }; gamRR = derive2 { name="gamRR"; version="0.7.0"; sha256="0zn8921a4i1lz5wpdfbd72pqb25r12abyqw7y2w53kfhdzs57f3l"; depends=[boot mgcv]; }; gamair = derive2 { name="gamair"; version="1.0-2"; sha256="1cjrd576l9md1jb1fc1y6iay5y49i0d8by024qsc7yik6f6mdl13"; depends=[]; }; @@ -9560,7 +9615,7 @@ in with self; { gameR = derive2 { name="gameR"; version="0.0.3"; sha256="09z10gavska02d6nfi36qlbl6ln25h83knrhib3n9c5bmycc8z8d"; depends=[]; }; gamesGA = derive2 { name="gamesGA"; version="1.1.3.7"; sha256="0km0z2haqgykl01xkzsbkpwibavgqfjygx7cg08ni68gw501689l"; depends=[shiny]; }; gamlr = derive2 { name="gamlr"; version="1.13-7"; sha256="0p0q77lkb5j9p1gd2z1n74pphx7h0lynzdamxrhz2w6bif1431wz"; depends=[Matrix]; }; - gamlss = derive2 { name="gamlss"; version="5.4-3"; sha256="0xih19zqgpjl5qv5j38ana6x29y84shn2jfl2lk4kaw3q7yx86b6"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; + gamlss = derive2 { name="gamlss"; version="5.4-10"; sha256="1cm0rvihniad309j26ll8kabndqzs3wdh5dak70b60z4kljrfx4c"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; gamlss_add = derive2 { name="gamlss.add"; version="5.1-6"; sha256="0g80bn0nszs2nmka6dypyvqnsgxp7mzhf5nd82n5x4jm3ca3dbdj"; depends=[gamlss gamlss_dist mgcv nnet rpart]; }; gamlss_cens = derive2 { name="gamlss.cens"; version="5.0-1"; sha256="1s83dgifidvc6cbrqirwlvwfzg08mlhmxxiqkbmnsy09i5j9fzd3"; depends=[gamlss gamlss_dist survival]; }; gamlss_countKinf = derive2 { name="gamlss.countKinf"; version="3.5.1"; sha256="1xalp909gxxhyhh4chlr1ssyfhydhw1w3szzbynajji98576zaqv"; depends=[gamlss gamlss_dist]; }; @@ -9568,7 +9623,7 @@ in with self; { gamlss_demo = derive2 { name="gamlss.demo"; version="4.3-3"; sha256="01p6abppwbnh2a2ks1g08z4iwq2fxf125y9s4qzssybsn76a3gf3"; depends=[gamlss_dist gamlss_tr rpanel]; }; gamlss_dist = derive2 { name="gamlss.dist"; version="6.0-5"; sha256="03m275qvrmpzmc10hs48277kxp503riz8sz6xk9pkpj8n7gsz20g"; depends=[MASS]; }; gamlss_foreach = derive2 { name="gamlss.foreach"; version="1.1-6"; sha256="1bld98lfbgj1v6l4vq3yysg1lnvpgj2r9vykkfy0q1yipv2xbnqb"; depends=[doParallel foreach gamlss gamlss_data gamlss_dist glmnet]; }; - gamlss_ggplots = derive2 { name="gamlss.ggplots"; version="1.0-0"; sha256="0z19jvgan08jijijcx5aswq2c4c5pbdyhhgb9idvhv7bir5qim06"; depends=[ellipse gamlss gamlss_dist gamlss_foreach ggplot2 ggridges]; }; + gamlss_ggplots = derive2 { name="gamlss.ggplots"; version="2.0-1"; sha256="1nzjfki007zky79xwi1mld7pxl6yg8snxdyh3zd9prndnbj6c85s"; depends=[ellipse gamlss gamlss_dist gamlss_foreach gamlss_inf ggplot2 ggridges]; }; gamlss_inf = derive2 { name="gamlss.inf"; version="1.0-1"; sha256="0m091zxjm5wvhm6mzbpzkr275n3qnlb3v4099k0a1jymahk4w7vr"; depends=[gamlss gamlss_dist]; }; gamlss_lasso = derive2 { name="gamlss.lasso"; version="1.0-1"; sha256="03c8k6hl23ag98dihznfz1h0qc3pwxbnpv58pvmx3xbb3lipfjfb"; depends=[gamlss glmnet lars Matrix]; }; gamlss_mx = derive2 { name="gamlss.mx"; version="6.0-0"; sha256="0b06nb6nq36ay0p5z57j5d4hrly5917wcsal7986mp1270iwnpip"; depends=[gamlss gamlss_dist nnet]; }; @@ -9599,12 +9654,12 @@ in with self; { gasfluxes = derive2 { name="gasfluxes"; version="0.4-4"; sha256="0gi0zk0h5rw75n6znada0cwa9qzy8higsiiqwgdm3q827j1x8iva"; depends=[AICcmodavg data_table MASS sfsmisc]; }; gasmodel = derive2 { name="gasmodel"; version="0.1.0"; sha256="0xyhkafjyh6x87l79yz1g8byj6gdvppci46d4brl32gcf2n28kh8"; depends=[abind arrangements Matrix mvnfast nloptr numDeriv pracma]; }; gastempt = derive2 { name="gastempt"; version="0.5.5"; sha256="0pz580nhr9hnpzdi59l00jv34jmy5iyh5skbwslq6gzjdw3jgsf4"; depends=[assertthat BH dplyr ggplot2 nlme Rcpp RcppEigen RcppParallel rstan shiny StanHeaders stringr tibble utf8]; }; - gaston = derive2 { name="gaston"; version="1.5.7"; sha256="14z94dpln4dvgrv2w7w9ik7h6rpvbf02qhq1hqzx8c2cndzxr21i"; depends=[Rcpp RcppEigen RcppParallel]; }; - gateR = derive2 { name="gateR"; version="0.1.11"; sha256="0c40wbymirc72l14hpz1gknhhhpinh7z50vdhbshi0iii6nlcmcr"; depends=[fields lifecycle raster rlang sparr SpatialPack spatstat_geom tibble]; }; + gaston = derive2 { name="gaston"; version="1.5.8"; sha256="1pv37csq3gvkld7hfxgbq72n35gx1wg3bvrcvzzzf0qsfb6g42cc"; depends=[Rcpp RcppEigen RcppParallel]; }; + gateR = derive2 { name="gateR"; version="0.1.12"; sha256="1yc400fq58zbl467rdr5rqsgf4gs9yalg7bibsdfdwh7wavd6zj0"; depends=[fields lifecycle raster rlang sparr SpatialPack spatstat_geom tibble]; }; gatepoints = derive2 { name="gatepoints"; version="0.1.4"; sha256="0gwyrkxn4xd79cl60xa312k6nz17mdjdiym65dq7s2384fa80wbm"; depends=[]; }; gauseR = derive2 { name="gauseR"; version="1.1"; sha256="0jlbaylglyza6hlf62g3z0n349zlzlhx6g4jwdzg8b2sh4c3c9yn"; depends=[deSolve]; }; gaussDiff = derive2 { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; }; - gausscov = derive2 { name="gausscov"; version="0.1.8"; sha256="1k58x5ksf76ilj4h3qmknq60vq0mwwgxzllyh5r33jindn5q8nmh"; depends=[]; }; + gausscov = derive2 { name="gausscov"; version="1.0.0"; sha256="0xc7cp56f5a3y9pghhmpvqb67dbs11n3irla1xdzf06yddzndnb6"; depends=[]; }; gaussfacts = derive2 { name="gaussfacts"; version="0.0.2"; sha256="095x7k7m7sy1gqkbm6wiqn26252dclz62sbnkv6cjvmbdxajl7m9"; depends=[]; }; gaussplotR = derive2 { name="gaussplotR"; version="0.2.5"; sha256="0amkgzgh6764ri30210nhbi3wcll3248fmkpclx010dxc3hllfdx"; depends=[ggplot2 metR rgl viridisLite]; }; gaussquad = derive2 { name="gaussquad"; version="1.0-3"; sha256="04689l076agncsxqcbkx76z89cvjigs8p8v58p5kad655gjpqcx3"; depends=[orthopolynom polynom]; }; @@ -9632,15 +9687,15 @@ in with self; { gclm = derive2 { name="gclm"; version="0.0.1"; sha256="0b1nr8k8m48x78m6fkga11ikkcxyjsjpvqcd1lp6n9n4hv7akmfp"; depends=[]; }; gclus = derive2 { name="gclus"; version="1.3.2"; sha256="1cz0g0i972955hhaji30rx8448x7f3as7z1sww9i5h86ybgirilw"; depends=[cluster]; }; gcmr = derive2 { name="gcmr"; version="1.0.3"; sha256="0m4px1w41226clczzmnzal3hs0qwrvlhhdnkcxj1i7qp358ksxvm"; depends=[betareg car Formula lmtest nlme sandwich sp]; }; - gconsensus = derive2 { name="gconsensus"; version="0.3.1"; sha256="0zray67q5saqs4n3k2v3hm7ly7hpfibvpvlzvqfhbfj98accm7in"; depends=[coda MASS rjags]; }; + gconsensus = derive2 { name="gconsensus"; version="0.3.2"; sha256="065i587611nh3fiaxlp88qzd12cjxpbdvxn8pvd99fmk88d809zs"; depends=[coda MASS rjags]; }; gcookbook = derive2 { name="gcookbook"; version="2.0"; sha256="11g1q187l4j31b6cdzdx5z3s14z3s09l7ynl36pzzn9j19l8cmrc"; depends=[]; }; - gdalUtilities = derive2 { name="gdalUtilities"; version="1.2.1"; sha256="172a47dcd6virqxg15vanypi2lwkjb4n4k2pkpd75ybv0w6cqpcg"; depends=[sf]; }; + gdalUtilities = derive2 { name="gdalUtilities"; version="1.2.2"; sha256="0k777x18w2r86jz5gk96fyjjyg7wd0phn57dwfq18kg9vrzs1d73"; depends=[sf]; }; gdalcubes = derive2 { name="gdalcubes"; version="0.6.2"; sha256="1fx1h2jwp2i72jky44arrlf37in3p8gv7ph6xn1f5qszrgmi4q48"; depends=[jsonlite ncdf4 Rcpp]; }; gdata = derive2 { name="gdata"; version="2.18.0.1"; sha256="1n9jw136kk5ld27qvny7cx2s8l34jdgmzlx40x62mmcqjddksbsy"; depends=[gtools]; }; gde = derive2 { name="gde"; version="0.2.0"; sha256="1xrncdmidzz9dv51bnbcrdh92im0lr97xi4rgb30p5sfxc4axml9"; depends=[data_table dplyr DT ggplot2 httr jsonlite leaflet progress R_utils readr RSQLite shiny shinycssloaders shinyWidgets stringr XML]; }; gdiff = derive2 { name="gdiff"; version="0.2-4"; sha256="0n50q4nghwdp70q69skn6s5vp366bz0fqavlq597267a18vsfnm6"; depends=[magick pdftools]; }; gdistance = derive2 { name="gdistance"; version="1.6"; sha256="1pjzslcnhqfs41zlxnwshq34pmnjh49lb239v74vjxq4rb2h5nrx"; depends=[igraph Matrix raster sp]; }; - gdm = derive2 { name="gdm"; version="1.5.0-3"; sha256="1vj38p7l36znha56c9dfm75z8rfpjhpmhzrsp3sqiwpvb650mmk8"; depends=[doParallel foreach pbapply raster Rcpp reshape2 vegan]; }; + gdm = derive2 { name="gdm"; version="1.5.0-9.1"; sha256="10c4fk6pbd946is8h8cr8qblrq6cch5zhlhrxqd8ix5wknm8cqn8"; depends=[doParallel foreach pbapply raster Rcpp reshape2 vegan]; }; gdpc = derive2 { name="gdpc"; version="1.1.3"; sha256="1ba7ma1y4pxvx7byg19fzgpp1zswcihdaifyhb7zdadizxjzyj43"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; gds = derive2 { name="gds"; version="0.1.1"; sha256="0gwq0k80rnbg4ibz6dz8sk6hqaklrdbv4vzv8zyk74am3aqipn20"; depends=[]; }; gdtools = derive2 { name="gdtools"; version="0.2.4"; sha256="0a1hqg5b484ji4g9dy0zi06wn9w7pk6hiy5ljzc1zgj9mbhlr21j"; depends=[Rcpp systemfonts]; }; @@ -9679,9 +9734,9 @@ in with self; { genderBR = derive2 { name="genderBR"; version="1.1.2"; sha256="19n3d6ps0wswq1bxgfqifq26svqf8q696im14wfglrl731mr0qbm"; depends=[dplyr httr jsonlite magrittr purrr tibble]; }; gendist = derive2 { name="gendist"; version="2.0"; sha256="0rs0sn1sb6j3pk2xncix04a093awlm2nw70g0rjhr7dlzmigspgb"; depends=[]; }; geneExpressionFromGEO = derive2 { name="geneExpressionFromGEO"; version="0.9"; sha256="15dvx2f4nsmw1mgjfpcdcfnx8335fd043xb4hdnqcbjzf9h228bp"; depends=[annotate Biobase BiocManager GEOquery markdown R_utils xml2]; }; - geneHapR = derive2 { name="geneHapR"; version="1.1.1"; sha256="037yy4xpw5vfxbf0z12hdaibzzppbkbsyb0xgvj5hilwj4ar57jy"; depends=[ape Biostrings GenomicRanges ggplot2 ggpubr IRanges magrittr maps muscle pegas reshape2 rlang rtracklayer stringdist stringr tibble tidyr trackViewer vcfR]; }; + geneHapR = derive2 { name="geneHapR"; version="1.1.6"; sha256="0wh2778vwslfvcv85f86nsr086msm21p578grqpnrk2iivp3wp48"; depends=[ape Biostrings genetics GenomicRanges ggplot2 ggpubr IRanges maps pegas reshape2 rlang rtracklayer shiny shinyjs stringdist stringr tibble tidyr trackViewer vcfR]; }; geneHummus = derive2 { name="geneHummus"; version="1.0.11"; sha256="1m6yyjsvmn3w87cw4da8js5vi74k5y739gxdx1yscx1n50bc3m34"; depends=[curl dplyr httr rentrez stringr]; }; - genekitr = derive2 { name="genekitr"; version="1.0.3"; sha256="0s4hzfbc41pxlhc0ra4l6ip0zmzx8vr2xwklm3lmkqip6i7m00dq"; depends=[clusterProfiler DOSE dplyr europepmc fst geneset ggplot2 ggraph igraph magrittr openxlsx rlang stringi stringr tidyr VennDiagram]; }; + genekitr = derive2 { name="genekitr"; version="1.0.8"; sha256="1ymsyrk8vradb0yp02r9xrm944d6dwv8757sqg1rcr9n44lcr4p2"; depends=[clusterProfiler dplyr europepmc fst geneset ggplot2 ggraph igraph magrittr openxlsx rlang stringi stringr tidyr VennDiagram]; }; genemodel = derive2 { name="genemodel"; version="1.1.0"; sha256="1x6n6k9ifv2swhyrghvm6fsz5vh85cdik8225175i9msvmkh928n"; depends=[stringr]; }; genepi = derive2 { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; }; genepop = derive2 { name="genepop"; version="1.1.7"; sha256="0b36nspq3kkad52k0viw1pdsf7h9h5ivi0ix7zg8i0z7vkhnm0cy"; depends=[Rcpp RcppProgress stringr]; }; @@ -9690,15 +9745,14 @@ in with self; { generator = derive2 { name="generator"; version="0.1.0"; sha256="0xjvnmnpdms8rrxxcz6pd8w4rnbv3ghzqv4m63zxia2l98x7z4rf"; depends=[]; }; generics = derive2 { name="generics"; version="0.1.3"; sha256="0lyhhwik0w7m5h3fbwl2f52gc1v2g6g6h6sc47sa9f58pxin213m"; depends=[]; }; genero = derive2 { name="genero"; version="0.1.0"; sha256="0akwwy5xbh7s40v8dr1zr7jfglv0iyh4zn0sb0rnz4r57qr6nh8w"; depends=[]; }; - geneset = derive2 { name="geneset"; version="0.2.6"; sha256="19a1ngw3916mykh2a99jaw80bpgrflqh6qs12mj7slgwih12g5px"; depends=[dplyr fst RCurl stringi stringr]; }; - genesysr = derive2 { name="genesysr"; version="1.0.0"; sha256="05jp8z7313r5wi9a5yw7fh198l7nd2ywzwg4f23yp4kfrkkgawn5"; depends=[dplyr httr jsonlite]; }; + geneset = derive2 { name="geneset"; version="0.2.7"; sha256="1fiyrlsy5zqmxdj71w5m0h70ln5b84y7mlhv2j8lad623gpng3l6"; depends=[dplyr fst RCurl stringi stringr]; }; + genesysr = derive2 { name="genesysr"; version="1.0.1"; sha256="0p1mzhwcffifph640qvb2g7qkj0gpjivsmwvih52fd9nwvqpmk9q"; depends=[dplyr httr jsonlite readr]; }; geneticae = derive2 { name="geneticae"; version="0.4.0"; sha256="0ka0m4dq8a9bzdk3gi7gj6dnc2a7c4chrzixw2g4qd7md31z33vx"; depends=[calibrate dplyr GGEBiplots ggforce ggplot2 MASS matrixStats missMDA pcaMethods prettydoc reshape2 rlang rrcov scales tidyr]; }; genetics = derive2 { name="genetics"; version="1.3.8.1.3"; sha256="0lljxvz7nc6y2z303icphar2niir0i407w5cyhy2pwspd9gwkwpy"; depends=[combinat gdata gtools MASS mvtnorm]; }; genie = derive2 { name="genie"; version="1.0.5"; sha256="07w6rf4a3d34j7dwz9zcxshg2sk1cd5v59xs3jxph17c9gga0nlq"; depends=[genieclust Rcpp]; }; genieBPC = derive2 { name="genieBPC"; version="1.0.1"; sha256="0zc0qbzj5a6rxzddw6jmk3rbbig09gcnb58003f4qkrm9mzc42gm"; depends=[cli dplyr dtplyr httr jsonlite purrr rlang stringr sunburstR tibble tidyr]; }; genieclust = derive2 { name="genieclust"; version="1.1.0"; sha256="1hwda0jkw67b6fnqpjl4axbaigbvlz0y2rfb7y06a8bhw2xq3mcy"; depends=[Rcpp]; }; genio = derive2 { name="genio"; version="1.1.1"; sha256="0cqn17k4is8lf8yym2h6l7nc51nzpx6br71z4bi12dm4ni0c0k6y"; depends=[dplyr Rcpp readr tibble]; }; - genius = derive2 { name="genius"; version="2.2.3"; sha256="03j6yry39nn8bccrnwjx1y36rdw167gjlkzl56g5lqwbrgx26bqy"; depends=[dplyr magrittr purrr reshape2 rlang rvest stringr tibble tidyr tidytext]; }; geniusr = derive2 { name="geniusr"; version="1.2.1"; sha256="14flyjrnw3l4j02dnr8495r5xdsr83firz0irpqbxw0jrajbj5dq"; depends=[curl dplyr httr purrr rvest stringr tibble xml2]; }; genlasso = derive2 { name="genlasso"; version="1.6.1"; sha256="0bhpsz4qcvnmf09l1j6r94ljrdfxidjrsmggb3q4xvyf2xxnnbfx"; depends=[igraph Matrix]; }; genlogis = derive2 { name="genlogis"; version="1.0.0"; sha256="01av5invhviii7adqihh10ib47rjzwfsqdgw3lfg1c72kzrqywgr"; depends=[distr doParallel foreach ggplot2 manipulate]; }; @@ -9722,12 +9776,12 @@ in with self; { geoFourierFDA = derive2 { name="geoFourierFDA"; version="0.1.0"; sha256="1a5ggjyfj5ic9h7fqvy3r7s0i6bmbwk95bf7y3vrmmmj0sxdm1mf"; depends=[magrittr orthopolynom Rcpp RcppArmadillo]; }; geoR = derive2 { name="geoR"; version="1.9-2"; sha256="1ndrah1aj996s3pdkixai5438xsfcfxcl21an9qxxa9kd8jzbqvw"; depends=[MASS sp splancs]; }; geoSAE = derive2 { name="geoSAE"; version="0.1.0"; sha256="16fkai95cqwxkylpk1gddyzja80036ghfb4ps3rz1vbbqzhg01x8"; depends=[MASS nlme]; }; - geoTS = derive2 { name="geoTS"; version="0.1.3"; sha256="12v50r2ym3nb21sskq7h4xsk6nzci06l9iync2ny91iwl7c9nrjc"; depends=[doParallel ff foreach iterators raster sp]; }; + geoTS = derive2 { name="geoTS"; version="0.1.8"; sha256="0hjhc68pl1gq9wcgvvagn903vlhwsayf7kka88rdcb6y7rgdlp5v"; depends=[doParallel ff foreach raster robustbase sp]; }; geobr = derive2 { name="geobr"; version="1.7.0"; sha256="0yx9mk5l2wh34xqg2v7p3p9hwdg2lpzd8bpgq4sm2qs0xk69sdw3"; depends=[curl data_table httr sf]; }; geocacheR = derive2 { name="geocacheR"; version="0.1.0"; sha256="04ckxmird6n179xvsx50cjdz046igjxxqdnz5pfxi8pdklnky20c"; depends=[dplyr magrittr stringr threewords tibble]; }; geocmeans = derive2 { name="geocmeans"; version="0.3.1"; sha256="1h51sxn8clw62j0r5rk4zi7s1hyrjzslmgrv2lgwx4s816cdhy19"; depends=[dplyr fclust fmsb future_apply ggplot2 leaflet matrixStats plotly progressr raster Rcpp RcppArmadillo Rdpack reldist reshape2 sf shiny spdep tmap]; }; geodaData = derive2 { name="geodaData"; version="0.1.0"; sha256="003m5wff0q4fdlg64qispmhj2aw83isxg3ijxwkwhvi33bpwpq4z"; depends=[]; }; - geodata = derive2 { name="geodata"; version="0.4-11"; sha256="02dhg84zzkf0hhh5nbj56w297ry4y8vpd7naimx5gkqfqh1qw21b"; depends=[terra]; }; + geodata = derive2 { name="geodata"; version="0.5-3"; sha256="1341wia70hmiaw4cwlld5x83mc10b85ji0mxfc75ar4w4yzplh6z"; depends=[terra]; }; geodetector = derive2 { name="geodetector"; version="1.0-4"; sha256="00zyx68jjl4mldah8mxfvwvv5yfkd4f1s2rlx6fsw6h8y2cwzj3l"; depends=[maptools rgdal rgeos sp]; }; geodimension = derive2 { name="geodimension"; version="1.0.0"; sha256="0mh16cdac7vi8zv98g3s06109fpadan441zd80x9yfsypx75sdz0"; depends=[dplyr generics magrittr pander readr rlang sf tibble tidyr tidyselect]; }; geodist = derive2 { name="geodist"; version="0.0.8"; sha256="09758v53r057rjsn844g2dc455ccndw1qlndl1xsm2gcp6ch2hr3"; depends=[]; }; @@ -9739,38 +9793,36 @@ in with self; { geofd = derive2 { name="geofd"; version="2.0"; sha256="1rsgy4nxfp1gi4vwh8zfzksr6sr2ga31kmd56q5m56gw530570ra"; depends=[fda]; }; geofi = derive2 { name="geofi"; version="1.0.7"; sha256="0x52g2d2h7rcz15bw5hdz2zzy1fbrajpdglmpbiij7mwwmpgc05d"; depends=[curl dplyr httpcache httr purrr rlang sf xml2 yaml]; }; geogrid = derive2 { name="geogrid"; version="0.1.1"; sha256="0b8afwgj9x56z6zh525y7qkiwbv77mjcw3v19kfba0426jn4vi87"; depends=[Rcpp RcppArmadillo rgeos sf sp]; }; - geohashTools = derive2 { name="geohashTools"; version="0.3.1"; sha256="0ks6ga1vsp5z7sy0xcq9nacffmfsx6yqdlnhqflsb8zb9qbygazf"; depends=[]; }; + geohashTools = derive2 { name="geohashTools"; version="0.3.2"; sha256="04xn0512b36rn473a8j025x5dqwi8kc45rr3iap5ai4wdcrb712z"; depends=[]; }; geojson = derive2 { name="geojson"; version="0.3.4"; sha256="0fvlw06hjb7z0mfsf8vhv1dchdjlvklyzjqlaydjzbwb1kvbhpq7"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; geojsonR = derive2 { name="geojsonR"; version="1.1.0"; sha256="0yqmz5snl5mpkbp2m5nddvqy7y72kcpgzy3d5b55l4sfzh7wfg4d"; depends=[R6 Rcpp RcppArmadillo]; }; geojsonio = derive2 { name="geojsonio"; version="0.10.0"; sha256="1laksjn2yh5lr8qd1j2vfkyvxyy2a0lylqs7cfc7vkpa7bbplrg2"; depends=[crul geojson geojsonsf jqr jsonlite lifecycle magrittr maptools readr rgeos sf sp V8]; }; geojsonlint = derive2 { name="geojsonlint"; version="0.4.0"; sha256="0l6xlf6l9shyvdd2ghkhcgbkxpmycapfpxakzbvd92j1x8dmr9az"; depends=[crul jsonlite jsonvalidate V8]; }; geojsonsf = derive2 { name="geojsonsf"; version="2.0.3"; sha256="1la6zfzv14ascwds0bp67d7x3am0v14mylc4b2lyd0nrf93a2p17"; depends=[geometries jsonify rapidjsonr Rcpp sfheaders]; }; - geoknife = derive2 { name="geoknife"; version="1.6.8"; sha256="0qxj86zb5zvjp9p235z16vkbydfykw3dx2xdcvkjcfxzg0c5ym3z"; depends=[curl httr progress sf whisker xml2]; }; + geoknife = derive2 { name="geoknife"; version="1.6.9"; sha256="1x2q3g31nha9dc96a0ch4pbxyx090wr4hndk704b5rm646ifv6pz"; depends=[curl httr progress sf whisker xml2]; }; geomander = derive2 { name="geomander"; version="2.1.0"; sha256="1ban8kss608fx4w64xl3m9zc1bf05alqfqrgv35rdrxw756iqv6a"; depends=[censable cli dataverse dplyr geos ggplot2 magrittr Rcpp readr rlang sf stringr tibble tidyr tigris]; }; geomapdata = derive2 { name="geomapdata"; version="2.0-0"; sha256="0mq7hxyyi1ikwdmh7ns9rnkvp2q5s48441i8msx8621scxdv6ga4"; depends=[]; }; geomaroc = derive2 { name="geomaroc"; version="0.1.1"; sha256="09j48ms1j7sqakznd2bj6sks1b6ckhch7ydhbdky4jk2acvl7lqw"; depends=[jsonlite sf]; }; - geomerge = derive2 { name="geomerge"; version="0.3.2"; sha256="1i6n88k8icwihr9w7ipjb50f68zad602dipb3hd887y4kyf14wni"; depends=[geosphere ggplot2 gridExtra inlmisc lubridate raster scales sp spdep]; }; + geomerge = derive2 { name="geomerge"; version="0.3.3"; sha256="043dg8q9jjfql4wlya17zqz33wg6c6crvxbsq3srlp7mppvapylh"; depends=[geosphere ggplot2 gridExtra lubridate raster scales sp spdep]; }; geometa = derive2 { name="geometa"; version="0.7-1"; sha256="18gr82k665y00h8mrq97mrr9l7p4m9m8b49dbgsh22hbz7j7c542"; depends=[crayon httr jsonlite keyring R6 readr XML]; }; - geometr = derive2 { name="geometr"; version="0.2.10"; sha256="00yhw6k9wj3q0mmhwrjvhybsz5fcx86ms5n1q2l492jljplp46cr"; depends=[checkmate crayon deldir dplyr purrr raster Rcpp rgdal rlang sf sp tibble]; }; geometries = derive2 { name="geometries"; version="0.2.0"; sha256="05036q4dccmmd955g4n2s5ncc9zxd9v9qyamszszwn147i7hkxcc"; depends=[Rcpp]; }; geometry = derive2 { name="geometry"; version="0.4.6.1"; sha256="0wplszaxi6phxffp3zww5alwnfbh9521qi43h65w057lrm1pmj2j"; depends=[linprog lpSolve magic Rcpp RcppProgress]; }; geomorph = derive2 { name="geomorph"; version="4.0.4"; sha256="02kbihr5r0zj24x499zhfvpqx7zadyhxmznnq0fvy1mwf28d5pnz"; depends=[ape ggplot2 jpeg Matrix rgl RRPP]; }; geomtextpath = derive2 { name="geomtextpath"; version="0.1.1"; sha256="0i5m1v8mn23krp7ha502v3kv5wpwdy8na4x3nqlg3zld293dybz4"; depends=[ggplot2 rlang scales systemfonts textshaping]; }; geonames = derive2 { name="geonames"; version="0.999"; sha256="0yz1b7y3vwa4izrhpry4n3iwzb7y67s5p3kgnd7d29cl5pcbpmqx"; depends=[rjson]; }; geonapi = derive2 { name="geonapi"; version="0.6-1"; sha256="1gmz05nwqbx4dc3zpd58an86101r6345cja386dgi2hyggg5cqbn"; depends=[geometa httr keyring openssl R6 XML]; }; - geonet = derive2 { name="geonet"; version="0.7.3"; sha256="0kp0a1bd8yyvp8w044arawyfmxwmqln3dqk0jzvz1vhbhldgy27s"; depends=[dplyr ggplot2 igraph Matrix mgcv spatstat_core spatstat_geom spatstat_linnet]; }; geonetwork = derive2 { name="geonetwork"; version="0.4.1"; sha256="04vf39hxl1a2kbgqc054xg9w6hbd3fwag6sy0j8a9agrd5wgks7h"; depends=[geosphere igraph rgdal sf sp]; }; geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; geos = derive2 { name="geos"; version="0.2.2"; sha256="0hmiskdwzlgabwhayw7hwi6nqria976xzz6xm95644w7fx723wd7"; depends=[libgeos wk]; }; geosapi = derive2 { name="geosapi"; version="0.6-4"; sha256="1h3yfhp68i4zm53mgpfq323fw3v9c3z5va2y296jgwhazypjhz9r"; depends=[httr keyring openssl R6 readr XML]; }; geoscale = derive2 { name="geoscale"; version="2.0.1"; sha256="1ykzxbwjdy0xi5hj5r201j3wrgahcxvxrgp40mqlw7zj80wgdgif"; depends=[]; }; geosed = derive2 { name="geosed"; version="0.1.1"; sha256="07j4q6sgrf83h2gi2j5qap5rifz8gimdacd3b7ld1p3b6ai6kv3r"; depends=[]; }; - geosimilarity = derive2 { name="geosimilarity"; version="1.1"; sha256="1pailxz87f50p7w8r2ryb7zsvwzgiz1l4iwj47kj633h5vbakx5r"; depends=[SecDim]; }; + geosimilarity = derive2 { name="geosimilarity"; version="2.2"; sha256="1mkab3377r04zybqsswakcgqwgby9iwb8bhxkr8s27blxha44jcp"; depends=[DescTools dplyr ggplot2 ggrepel SecDim]; }; geospark = derive2 { name="geospark"; version="0.3.1"; sha256="004axa0k9xg1hra8jihwgnc379k8pib1h0zkr82j0m9sii4wrk6r"; depends=[dbplyr dplyr sparklyr]; }; - geosphere = derive2 { name="geosphere"; version="1.5-14"; sha256="0bg4vfmrw140j2ax0p6bflvb77w03ir39wa87l96rj473jpa9hzj"; depends=[sp]; }; + geosphere = derive2 { name="geosphere"; version="1.5-18"; sha256="1h6sqvxwxv22js6hz4s8sjk50ygw0y34icbbbdb2v36ca3q6zzwr"; depends=[Rcpp sp]; }; geospt = derive2 { name="geospt"; version="1.0-2"; sha256="1814nn0naxvbn0bqfndpmizjbqcs6rm87g2s378axkn6qpii4bh8"; depends=[fields genalg gsl gstat limSolve MASS minqa plyr sgeostat sp TeachingDemos]; }; geosptdb = derive2 { name="geosptdb"; version="1.0-1"; sha256="1n1jvigavcxlbc5wki74lnhax3060i44m1cvkcr664wsjqhx3kl2"; depends=[FD fields geospt gsl limSolve minqa sp StatMatch]; }; - geostan = derive2 { name="geostan"; version="0.4.0"; sha256="1lp1bfpcj7809wmw9hkdzqxdfld9vlr3g5x1m0zhi61zz6g73nld"; depends=[BH ggplot2 gridExtra MASS Matrix Rcpp RcppEigen RcppParallel rstan rstantools sf signs spdep StanHeaders truncnorm]; }; + geostan = derive2 { name="geostan"; version="0.4.1"; sha256="0ld8mhlii8hrzlxqm9wj4kzwafink5zm45mah804qa7p4i78l363"; depends=[BH ggplot2 gridExtra MASS Matrix Rcpp RcppEigen RcppParallel rstan rstantools sf signs spdep StanHeaders truncnorm]; }; geostats = derive2 { name="geostats"; version="1.5"; sha256="18f4b6l2qm72dc561q304azi5z4nrlg99zzgkxc406473qadqy0w"; depends=[]; }; geotools = derive2 { name="geotools"; version="0.1"; sha256="0d0vf9dvrrv68ivssp58qzaj8vra26ms33my097jmzmgagwy1spd"; depends=[]; }; geotopbricks = derive2 { name="geotopbricks"; version="1.5.4"; sha256="1mn15mchxkv9qqjrcsyx0pf56sdz0ba7i5jd1ci1ilr6rig81ckz"; depends=[raster rgdal stringr zoo]; }; @@ -9780,7 +9832,7 @@ in with self; { geozoo = derive2 { name="geozoo"; version="0.5.1"; sha256="0g91yhg7zw1bp0lxxblr2irckjg2rl4pg1vgglccnmxkzn0ji2qi"; depends=[bitops]; }; gepaf = derive2 { name="gepaf"; version="0.1.1"; sha256="0n36w40jrq3qkgmhz9wrnhp6fczw7bm96g950sa4nq33872xhfgm"; depends=[bitops]; }; germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.7"; sha256="03573110wrmr9m2zvcmqqhrlm8k24x1z1vslyry75bcs2jm8fk4z"; depends=[broom data_table ggplot2 ggrepel mathjaxr minpack_lm plyr Rdpack]; }; - gert = derive2 { name="gert"; version="1.9.1"; sha256="1p8z5qap06qf680r25y78wgnprzl9ib3xp3kvsw01bh819v1h7bm"; depends=[askpass credentials openssl rstudioapi sys zip]; }; + gert = derive2 { name="gert"; version="1.9.2"; sha256="0pk6mf300kh6wwzvaqymwzlikkbf8zj0xpslgyydn7zvr95ipjj2"; depends=[askpass credentials openssl rstudioapi sys zip]; }; gesisdata = derive2 { name="gesisdata"; version="0.1.0"; sha256="02xjpw41gm3778lj01kcwjx0lr1i95a0wlrfvs0r5xlajq13jr67"; depends=[dplyr magrittr rio RSelenium stringr]; }; gesso = derive2 { name="gesso"; version="1.0.2"; sha256="0i7a927mbll8mlisxb0ic62fvq1wp5v0m69n7zkhcjabkxr7gbn3"; depends=[BH bigmemory dplyr Matrix Rcpp RcppEigen RcppThread]; }; gestalt = derive2 { name="gestalt"; version="0.2.0"; sha256="0p8xrlmc81irh9s2c57sxgmvdjmmgmya0h31904c4cwi9aa32f4z"; depends=[rlang]; }; @@ -9792,11 +9844,10 @@ in with self; { getProxy = derive2 { name="getProxy"; version="1.13"; sha256="0n8ja0i1v0cd2piqyx4hfc4qw18d535j3ffpz164c3r8cmppnqzd"; depends=[cli httr]; }; getable = derive2 { name="getable"; version="1.0.3"; sha256="0v45nqpx55vbj68gj4wxr0bdlrl897ayac78rxjd2lkkjx49hlyh"; depends=[knitr]; }; gethr = derive2 { name="gethr"; version="0.1.0"; sha256="0kpi9b9yg2nh332zkml24pmj6vgjfh8mrfjjg5a636s2rg98g5g7"; depends=[httr jsonlite]; }; - getip = derive2 { name="getip"; version="0.1-0"; sha256="0l7692ddgidy3jyg7mw5nnh0agkyj7pf8v8clcinzs2y3q5qic6f"; depends=[]; }; + getip = derive2 { name="getip"; version="0.1-2"; sha256="0qk994ip5d4m827n0lz6lhpvdbmz2gqpl4513r82s7ckkzg2rvyp"; depends=[]; }; getlandsat = derive2 { name="getlandsat"; version="0.2.0"; sha256="15450v93lc4i2qda0zlb5vplwbarkmf3f6sb4rlrdpv9vlj85hff"; depends=[crul data_table rappdirs readr tibble xml2]; }; getmstatistic = derive2 { name="getmstatistic"; version="0.2.2"; sha256="100m5cbwx9anlh1hzjv7d1h1viqsxb0bx0ksc1dsjx3gqrf77q1n"; depends=[ggplot2 gridExtra gtable metafor psych stargazer]; }; getopt = derive2 { name="getopt"; version="1.20.3"; sha256="0zzmzgwl9a4y3s34600vmih22d6y32294f9bvxrnmffnvkgmy7sk"; depends=[]; }; - getpublist = derive2 { name="getpublist"; version="0.1.0"; sha256="0p6l7qha6i7vhqvav74yxpa6qph35g41v00173mjjqsvyhd0qc5i"; depends=[dplyr magrittr rvest stringr tibble tidyr xml2]; }; gets = derive2 { name="gets"; version="0.37"; sha256="1h7hn8n08sqnygbzyiq9zg11b5i9g6islc72c0qypx4j4wba5z55"; depends=[zoo]; }; getspres = derive2 { name="getspres"; version="0.2.0"; sha256="190y4qrm1wawp0787zhw3g8h9s2smacvvxbs70pxbhysq4bkzcdd"; depends=[colorRamps colorspace dplyr metafor plotrix RColorBrewer]; }; gettz = derive2 { name="gettz"; version="0.0.5"; sha256="0dgzw5mji5983588vj6q2kyjv9dngmrd0ilrkhfc3b4ngvfq61mf"; depends=[]; }; @@ -9815,6 +9866,7 @@ in with self; { gfpop = derive2 { name="gfpop"; version="1.1.0"; sha256="0kqvna57q8a1ybzj5svw1k5qvnpd9n7c0jg6gyx1y00si3vazd84"; depends=[Rcpp]; }; gg_gap = derive2 { name="gg.gap"; version="1.3"; sha256="0m66050ryn31xmsmmikjsssllasvjdmp9yjbwfdwfpwdv106zn9h"; depends=[cowplot ggplot2]; }; ggBubbles = derive2 { name="ggBubbles"; version="0.1.4"; sha256="116rl8j0s9xwhh9jl5yj9fspkhv2zrirbx9247hhns9ngrdn4i3x"; depends=[dplyr ggplot2]; }; + ggChernoff = derive2 { name="ggChernoff"; version="0.3.0"; sha256="0dkr3vl4a3css19j53x1c1gxxgjg57d444ahxrrrxsyva49lnq1y"; depends=[ggplot2 scales]; }; ggDCA = derive2 { name="ggDCA"; version="1.1"; sha256="0jpg7n6nk2jgq668ff0l9zk26zk39abc74f6w5x8gf4zsb8y0zp9"; depends=[base_rms do ggplot2 rms set survival]; }; ggDoE = derive2 { name="ggDoE"; version="0.7.8"; sha256="1732jbrqhygip1g8l7zlsz57bqkmandh15w5r94nm1g6s48f7aak"; depends=[data_table ggplot2 insight]; }; ggDoubleHeat = derive2 { name="ggDoubleHeat"; version="0.1.1"; sha256="0s9dpjkphmavvhcrsdjr7i4nq39cp55k43y6jhkx2glc198a73fq"; depends=[ggnewscale ggplot2 rlang]; }; @@ -9830,6 +9882,7 @@ in with self; { ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.5"; sha256="1biw91a8p13h62v4w3yim6ghr98khmyhb3qd0h04asf91vvmpxbv"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; }; ggTimeSeries = derive2 { name="ggTimeSeries"; version="1.0.2"; sha256="0sd39svwi3ai81szahd49a8qvsydi1922z4q6r2r70fpbfwi4qrq"; depends=[data_table ggplot2]; }; ggVennDiagram = derive2 { name="ggVennDiagram"; version="1.2.2"; sha256="1l4cincm7c2q9x3djiv1lm9bvivaqk7kincx19b8f760wz9hp74k"; depends=[dplyr ggplot2 magrittr plotly purrr RVenn sf tibble yulab_utils]; }; + ggalignment = derive2 { name="ggalignment"; version="1.0.1"; sha256="1rqndv1xqz350v6a23pfrl4zkwjyh4zg633kwcxnv57v0g01mmif"; depends=[dplyr ggimage ggplot2 magrittr rlang]; }; ggallin = derive2 { name="ggallin"; version="0.1.1"; sha256="0hrxa7m07ppvnndivxcgxksdyblb6fw17aw46maqavlvcrz3fjgm"; depends=[ggplot2 scales]; }; ggalluvial = derive2 { name="ggalluvial"; version="0.12.3"; sha256="0mkan9gxg3yxjism22yxbhvlh2lh7wpbrqpb355za790prcmjbh3"; depends=[dplyr ggplot2 lazyeval rlang tidyr tidyselect]; }; ggalt = derive2 { name="ggalt"; version="0.4.0"; sha256="0ssa274d41vhd6crzjz7jqzbwgnjimxwxl23p2cx35aqs5wdfjpc"; depends=[ash dplyr extrafont ggplot2 gtable KernSmooth maps MASS plotly proj4 RColorBrewer scales tibble]; }; @@ -9838,21 +9891,21 @@ in with self; { ggarchery = derive2 { name="ggarchery"; version="0.4.1"; sha256="12wikn28pm6mvl87f91fn21dayrs2jjy5wqy7mba0lnc1zkszd0y"; depends=[dplyr ggplot2 glue magrittr purrr rlang tidyr]; }; ggasym = derive2 { name="ggasym"; version="0.1.6"; sha256="1vgsqq2m4w5clmf27mmj6jqn2s8m1izz3gj2bxqpmdcvzf5vxkgr"; depends=[dplyr ggplot2 magrittr purrr rlang scales stringr tibble tidyr]; }; ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.6.0"; sha256="0crk29p5vi1r3a988kms4y7r0iqwgwzsikgvh18r9wbzyr98bb5v"; depends=[beeswarm ggplot2 vipor]; }; - ggblanket = derive2 { name="ggblanket"; version="1.5.0"; sha256="18690ayh9y219xxs1x2aa9pf8w508vzgsyz4g8fbikrw7vwp8m4w"; depends=[dplyr forcats ggplot2 hms lubridate magrittr purrr rlang scales snakecase tidyr tidyselect viridis]; }; + ggblanket = derive2 { name="ggblanket"; version="1.6.1"; sha256="1yjmyjs1s50zds5qmlvi8j0q3d97sivd4ra2b7418wm7qnkl9zjz"; depends=[dplyr forcats ggplot2 hms lubridate magrittr purrr rlang scales snakecase stringr tidyr tidyselect viridis]; }; ggborderline = derive2 { name="ggborderline"; version="0.2.0"; sha256="1acb3z2dwasmn4ngc7wqk3y4n34ah3fhdxsbdl3dmbc75nmdsn5a"; depends=[cli ggplot2 rlang vctrs]; }; + ggbrain = derive2 { name="ggbrain"; version="0.8.0"; sha256="1c5lcmvsgjvwabwvkq7g19p35fzb25q5919ia1adzqfwr8a2zhpy"; depends=[checkmate data_table dplyr ggnewscale ggplot2 ggrepel glue imager Matrix patchwork Rcpp RcppArmadillo rlang RNifti tibble tidyr tidyselect]; }; ggbreak = derive2 { name="ggbreak"; version="0.1.1"; sha256="1jscvyphjx837lbb9mxdqaaknkp8krgapak91ykv1xv150xwr7cs"; depends=[aplot ggfun ggplot2 ggplotify rlang]; }; ggbuildr = derive2 { name="ggbuildr"; version="0.1.0"; sha256="0pld635v6fv46ky7s4icwxlcnr7z6bp5ikf20adpkljwhy0wwxak"; depends=[ggplot2 purrr readr]; }; ggbump = derive2 { name="ggbump"; version="0.1.0"; sha256="15cnzv2q3gylkmd1zj044cp14ldnkc4fzwmxaqpc8cagwf9i10zk"; depends=[dplyr ggplot2 purrr tidyr]; }; ggchangepoint = derive2 { name="ggchangepoint"; version="0.1.0"; sha256="0brd9z8wj563j2kcx12bz4kyg2ynppxx5cz8k23xli1qijlib98p"; depends=[changepoint changepoint_np dplyr ecp ggplot2 Rdpack tibble]; }; ggcharts = derive2 { name="ggcharts"; version="0.2.1"; sha256="1c0gdn8skkm82f3qxv9551l36zwqcga9b9sbc48q8hp71ay4ac6b"; depends=[colorspace dplyr ggplot2 lifecycle magrittr patchwork rlang]; }; ggcleveland = derive2 { name="ggcleveland"; version="0.1.0"; sha256="1pl9qhj7p5kflx0ni59hq1k9afqchghg5wig9v1ml5pqrjz70pxa"; depends=[dplyr egg ggplot2 lattice magrittr readr rlang stringr tibble tidyr vctrs]; }; - ggconf = derive2 { name="ggconf"; version="0.1.3"; sha256="0g4xasqhdiqfqahakv6p5npl56f2iakx4bnc9v9zcjr077kdda4n"; depends=[ggplot2 rly]; }; ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.4"; sha256="186a0mpdpipp24fjbd52l1gdgpqm6vl83ff8069d8nngyqbrx0jr"; depends=[ggplot2 reshape2]; }; - ggcorset = derive2 { name="ggcorset"; version="0.3.0"; sha256="1md6krsq4qmdix4x141azyaa02f64shzkw591zz9ay7jhpx70r59"; depends=[dplyr gghalves ggplot2 ggstance]; }; + ggcorset = derive2 { name="ggcorset"; version="0.4.5"; sha256="18i7xj3h0v556y2m7b1cnlqhzfp9jv5gpchhz5rmm8d6y3k4czii"; depends=[dplyr gghalves ggplot2 ggstance]; }; ggcoverage = derive2 { name="ggcoverage"; version="0.7.1"; sha256="088gyc6054d8xx3k3pg5i40cnvyryyq4k6rn214li0yslj3fphyi"; depends=[Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggbio ggh4x ggplot2 ggrepel IRanges magrittr patchwork RColorBrewer reshape2 rlang Rsamtools rtracklayer S4Vectors scales seqinr]; }; ggdag = derive2 { name="ggdag"; version="0.2.7"; sha256="1p31806zm2fg8b3lq1v1j0k4bzak0yi73sqzc0gm7piwqswfny70"; depends=[dagitty dplyr forcats ggplot2 ggraph ggrepel igraph magrittr pillar purrr rlang stringr tibble tidygraph]; }; ggdark = derive2 { name="ggdark"; version="0.2.1"; sha256="1w93g2j4g45x9s841v9zi18lxzda81ipa13fajqc6p9xk8frvgrf"; depends=[ggplot2]; }; - ggdemetra = derive2 { name="ggdemetra"; version="0.2.2"; sha256="1j0nwmv2acyrkpn230jj6yf5nnl40kpqdqaglrnrfqw5rp357krp"; depends=[ggplot2 ggrepel gridExtra RJDemetra]; }; + ggdemetra = derive2 { name="ggdemetra"; version="0.2.3"; sha256="1vyjg7kzf9xq0kxrcjzr2nmd74dc35i9kpahz1wf9jvvq8l33w60"; depends=[ggplot2 ggrepel gridExtra RJDemetra]; }; ggdendro = derive2 { name="ggdendro"; version="0.1.23"; sha256="1f4fz9llmbpb8gh90aid7dvriadx16xdhsl7832yw4pyqj4fjcrs"; depends=[ggplot2 MASS]; }; ggdensity = derive2 { name="ggdensity"; version="0.1.1"; sha256="05brrczlvrqkcjizla920490h3fbcfldpysrv7xj4jy7hpzwfn16"; depends=[ggplot2 isoband MASS scales tibble vctrs]; }; ggdist = derive2 { name="ggdist"; version="3.2.0"; sha256="0ihy27d45gifxn8yc9w5g3cn3kmbk268mxipmvmdd0mjxgcqkj89"; depends=[distributional dplyr ggplot2 glue HDInterval numDeriv rlang scales tibble tidyselect vctrs withr]; }; @@ -9862,23 +9915,23 @@ in with self; { ggedit = derive2 { name="ggedit"; version="0.3.1"; sha256="10fbjqq6l7wfibi65mq423w7v8gymr541if749qhsnd9b2jyhaj5"; depends=[colourpicker dplyr ggplot2 magrittr miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tidyr]; }; ggeffects = derive2 { name="ggeffects"; version="1.1.4"; sha256="1j3l5v00f3xx2pwwfg1z9y31h8qja88nx7lycwj1y55ry5i6drr1"; depends=[insight]; }; ggenealogy = derive2 { name="ggenealogy"; version="1.0.1"; sha256="19six9ln1yaqv268abm9qvb61nl8zdz3gghwr8hmwsa94xwhzhkq"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; - ggetho = derive2 { name="ggetho"; version="0.3.6"; sha256="1iv0vad8y85bvz8rx0flqyrb38d79j9fhmd6ay5siyccigi88clj"; depends=[behavr data_table ggplot2 labeling rlang scales stringr]; }; + ggetho = derive2 { name="ggetho"; version="0.3.7"; sha256="0bdqx3x42jp22bs297nhdgzvywhq4cy0lwmwprl7vmjjh8lwvkxk"; depends=[behavr cli data_table ggplot2 labeling rlang scales stringr]; }; ggfan = derive2 { name="ggfan"; version="0.1.3"; sha256="1p3hbznpsaznlk0lnjyazc130www0p5919qplg3kspng7qh8p22w"; depends=[colorspace dplyr ggplot2 rstan]; }; ggfittext = derive2 { name="ggfittext"; version="0.9.1"; sha256="0yckj6awx42yrlv7lfq9jplnzqv5lpvgmb0327bx14pc3q36055f"; depends=[ggplot2 shades stringi]; }; ggfocus = derive2 { name="ggfocus"; version="1.0.0"; sha256="03q0rz7flm8sc8hrlkcm5fz66qiyxb8z8q4bh9dglhw0jc8q1fvb"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang]; }; ggforce = derive2 { name="ggforce"; version="0.4.1"; sha256="0wqq8l7lq96k4w0vq12jcg7clvgia8s35jjbqq1s0py4cgxijhml"; depends=[cli ggplot2 gtable lifecycle MASS polyclip Rcpp RcppEigen rlang scales systemfonts tidyselect tweenr vctrs withr]; }; ggformula = derive2 { name="ggformula"; version="0.10.2"; sha256="0xb39gjn6q7va1d1fhvf2dw9428s1q13wasx4y3cz2f0lls1r2wl"; depends=[ggforce ggplot2 ggridges ggstance labelled magrittr mosaicCore rlang scales stringr tibble]; }; - ggfortify = derive2 { name="ggfortify"; version="0.4.14"; sha256="038m74azpy43869ax1yi6wxbl1kr59iaxl8raiikjg749vcx6njw"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; - ggfun = derive2 { name="ggfun"; version="0.0.7"; sha256="0x71p3mm0sw72hv92368wy2yiy7zv826p3kddpwndqv1bywmyfx8"; depends=[ggplot2 rlang]; }; + ggfortify = derive2 { name="ggfortify"; version="0.4.15"; sha256="1cfwv8jjy1yk0l5wnp48ql1javvrzq1wnh1lv49xp6rynz00lxm8"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; + ggfun = derive2 { name="ggfun"; version="0.0.9"; sha256="04kn367mzgrfwnwz97vw5jqp2kig94hmxmhyyic7ddvk3sfhwx2w"; depends=[ggplot2 rlang]; }; ggfx = derive2 { name="ggfx"; version="1.0.1"; sha256="1lys5lzlilzvd6dm7rkxv7nvnp80fajl5yzhpwcbb5az5832ik27"; depends=[ggplot2 gtable magick ragg rlang]; }; gggap = derive2 { name="gggap"; version="1.0.1"; sha256="1iidxm7qcrg0isw2q27cmjbfb3pkfj5jcg1nj8lgy6xmydw3vrw3"; depends=[cowplot ggplot2]; }; gggenes = derive2 { name="gggenes"; version="0.4.1"; sha256="1s4knz2g06w46jbi037l9ii0kkxvl7gnljp54s4z36hnswsrv8jk"; depends=[ggfittext ggplot2 rlang]; }; ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; }; gggibbous = derive2 { name="gggibbous"; version="0.1.1"; sha256="1sy9d9hl04b13yz4563bzsdznjdh3xmikdrsqg8kdv8wn481lqbd"; depends=[ggplot2 scales]; }; gggrid = derive2 { name="gggrid"; version="0.2-0"; sha256="0g8msi5qpnr2npcgjvdjncrq6p61ddpzasy5g0fxqbybbpfxsyi8"; depends=[ggplot2]; }; - ggh4x = derive2 { name="ggh4x"; version="0.2.2"; sha256="11mskrby3gyjhkvnkcwl2ar1bdh4h45y48dfnm4kzgc7nwvdl3ia"; depends=[cli ggplot2 gtable lifecycle rlang scales vctrs]; }; + ggh4x = derive2 { name="ggh4x"; version="0.2.3"; sha256="0da5r8zfx1ixhk266byspfm2aifhm0jrvbk264xya712pxayiw4a"; depends=[cli ggplot2 gtable lifecycle rlang scales vctrs]; }; gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.2"; sha256="1sy0m6pqmnjbqv60rljyblhis0dxwkhw751jhlad5arcgrcwf4k8"; depends=[ggplot2 ggrepel]; }; - gghalves = derive2 { name="gghalves"; version="0.1.3"; sha256="1lj4c38fzxwg8gy57ymf00lqjdplb7v2a0lnd262c1d5cavqiws4"; depends=[ggplot2 gtable]; }; + gghalves = derive2 { name="gghalves"; version="0.1.4"; sha256="1qsxq2zbz4zcpqc7949apznn9f2c959jwwx010bl4gf2p6vchfx7"; depends=[ggplot2 gtable]; }; gghdr = derive2 { name="gghdr"; version="0.2.0"; sha256="1id0ky2mf656xqsmg76f627zw8iff4q1wzgih32nryk0hfvm2gfi"; depends=[digest farver ggplot2 hdrcde scales tibble]; }; ggheatmap = derive2 { name="ggheatmap"; version="2.2"; sha256="13cf3xk5drb6dfr3gcbgfi0hk6akk9b3g9f3c2jy6hz8rz5xnyn6"; depends=[aplot factoextra ggplot2 ggpubr patchwork tibble tidyr]; }; gghighlight = derive2 { name="gghighlight"; version="0.4.0"; sha256="0vfcn3gg6j7g20n2z1iwr94jnpqn0zl5j9jfc8bnbsrmz49dzqpd"; depends=[dplyr ggplot2 ggrepel lifecycle purrr rlang tibble]; }; @@ -9887,17 +9940,17 @@ in with self; { ggimg = derive2 { name="ggimg"; version="0.1.2"; sha256="1ynfq8lwlw851j00k7mm63w5yyqkd7v67fs8g2nwxk7ac0wb44ph"; depends=[abind ggplot2 jpeg png]; }; gginference = derive2 { name="gginference"; version="0.1.3"; sha256="1r960cglnkii8xih4r1r7wd857jqn53f08zi9dnj54bpqrs374zx"; depends=[ggplot2 rlang]; }; gginnards = derive2 { name="gginnards"; version="0.1.1"; sha256="0rwg9yan73ca4s8nd8x6xyjs68mvz4lxns5xmkvb8lf0fs9pkahn"; depends=[ggplot2 magrittr rlang stringr tibble]; }; - ggip = derive2 { name="ggip"; version="0.2.2"; sha256="1mqjd3bf05dln15s3qlf508260dzz888sm3n0a2ghd67x5jnxpqi"; depends=[dplyr ggplot2 glue ipaddress Rcpp rlang tidyr vctrs]; }; - ggiraph = derive2 { name="ggiraph"; version="0.8.3"; sha256="0vq5ymgnipzflgzhm880kyyrp784v6fvndmffzzn2q0pfjj772rr"; depends=[ggplot2 htmltools htmlwidgets purrr Rcpp rlang systemfonts uuid]; }; + ggip = derive2 { name="ggip"; version="0.3.0"; sha256="1wh7yj445152p9ynq2l1cp1cm2si88s3dbb9qpszimlzgqvzv8la"; depends=[cli dplyr ggplot2 ipaddress Rcpp rlang tidyr vctrs]; }; + ggiraph = derive2 { name="ggiraph"; version="0.8.5"; sha256="1fnv4bsm2avgaklmsbqs1gbixipifb8sfwiwnrbnsqycqh56n6wc"; depends=[ggplot2 htmltools htmlwidgets purrr Rcpp rlang systemfonts uuid vctrs]; }; ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.3.0"; sha256="0q8ppixw5i1hpphmswpw6lvq7gx8rx4gfs2b8d31wbn32ziiv2rk"; depends=[dplyr ggiraph ggplot2 magrittr mgcv mycor plyr ppcor purrr RColorBrewer reshape2 scales sjlabelled sjmisc stringr tidyr]; }; ggisotonic = derive2 { name="ggisotonic"; version="0.1.2"; sha256="1jz1qhx51gzq6lbk24pjxc55nhzc6alsy9h870jn88mn9fpx4lhp"; depends=[dplyr fdrtool ggplot2]; }; ggjoy = derive2 { name="ggjoy"; version="0.4.1"; sha256="012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"; depends=[ggplot2 ggridges]; }; gglasso = derive2 { name="gglasso"; version="1.5"; sha256="12l0ac1n54z41yw7c00fm6q2mjmhp9blk4f8vp7q2my2xxwh1fmj"; depends=[]; }; - gglgbtq = derive2 { name="gglgbtq"; version="0.1.0"; sha256="1a5hnmmiw3prqg8w34da0g9x59a7zywlp1fcn6bdv589m68kbx53"; depends=[ggplot2]; }; - gglm = derive2 { name="gglm"; version="0.1.0"; sha256="12bqqh9614v0cv45czqh6w0in4hbhwmicvcw8l07zdhrn9aq7y9m"; depends=[ggplot2 patchwork rlang]; }; + gglgbtq = derive2 { name="gglgbtq"; version="0.1.1"; sha256="0z03rckalci6g9cd69mz3b7mz8q5z8313ci0q0qcfpkvfxmrz2py"; depends=[ggplot2]; }; + gglm = derive2 { name="gglm"; version="1.0.0"; sha256="1aq49lvscgxbf8nzxb67bzrn86lb02qg189qpgmvhdlynhzry05h"; depends=[broom broom_mixed dplyr ggplot2 metafor patchwork purrr rlang tibble tidyr vctrs]; }; gglorenz = derive2 { name="gglorenz"; version="0.0.2"; sha256="1kag8p2chd0sbn8affpxzi4aawpm71ls97dwdgx7mxxfwkdb2q0y"; depends=[ggplot2 ineq]; }; ggm = derive2 { name="ggm"; version="2.5"; sha256="11wc6k2kj2ydy0dyks5mbvbhxm1r43id87anl1jg6dn0yv4m78di"; depends=[graph igraph]; }; - ggmap = derive2 { name="ggmap"; version="3.0.0"; sha256="13dmzl6z62pzjiffilarkji46vy0sacxa8a7mhrhc3biq3ylzhln"; depends=[bitops digest dplyr ggplot2 glue httr jpeg magrittr plyr png purrr RgoogleMaps rjson scales stringr tibble tidyr]; }; + ggmap = derive2 { name="ggmap"; version="3.0.1"; sha256="0pg38zyxv1j6mwdwdqljynqrg7zjwqpsh65xdwmvbl0zgxa4p0pw"; depends=[bitops cli digest dplyr ggplot2 glue httr jpeg magrittr plyr png purrr RgoogleMaps rlang scales stringr tibble tidyr]; }; ggmatplot = derive2 { name="ggmatplot"; version="0.1.2"; sha256="0k062kqa9hrq1iyjwjj670sdk559zx1nxpbkk0sxkda2h235lxjr"; depends=[ggplot2]; }; ggmcmc = derive2 { name="ggmcmc"; version="1.5.1.1"; sha256="1y6ya2qihm8h6ds84akhmsxn9c8jriw03wakaqzsmi21agz87n21"; depends=[dplyr GGally ggplot2 tidyr]; }; ggmice = derive2 { name="ggmice"; version="0.0.1"; sha256="06asqqzjnlx8hl63nfl83l8x1bga59vhn4x2sl8j0v6bmcj0fnqm"; depends=[dplyr ggplot2 magrittr mice purrr rlang stringr tidyr]; }; @@ -9906,24 +9959,24 @@ in with self; { ggmotif = derive2 { name="ggmotif"; version="0.2.1"; sha256="1pqkl5zw4v6b81nbxcrpz44sjs4j65iw23j9xiy4d7yqj1bx7604"; depends=[ape cowplot data_table dplyr ggplot2 ggsci ggseqlogo ggtree magrittr memes patchwork stringr tidyverse treeio universalmotif XML]; }; ggmr = derive2 { name="ggmr"; version="0.1.1"; sha256="0941rvh7m5knlhp0m0mhm4j8spmch0pyvwhzs3bycq3vzlvzv1w7"; depends=[MASS]; }; ggmuller = derive2 { name="ggmuller"; version="0.5.4"; sha256="0y7bm9fm5i8acpy6fa903ca2r9yasky7kg2hicm4xz5ni09jm20x"; depends=[ape dplyr ggplot2]; }; - ggmulti = derive2 { name="ggmulti"; version="1.0.5"; sha256="1dgx161xsnvv2bg5ja2caxyc9sc6wahx4gwc3nk70m3nq9ibmqva"; depends=[dplyr ggplot2 tidyr]; }; + ggmulti = derive2 { name="ggmulti"; version="1.0.6"; sha256="0cynzl5aamm8ra6jz3j6n2frd680f35p3f38gcx12zsk1vzsl4fr"; depends=[cli dplyr ggplot2 tidyr]; }; ggnetwork = derive2 { name="ggnetwork"; version="0.5.10"; sha256="0gqdgy5yh700dg0f7xb80hczlnqfisn8l55j7amd1n7fp2x5sr8v"; depends=[ggplot2 ggrepel igraph network sna]; }; ggnewscale = derive2 { name="ggnewscale"; version="0.4.8"; sha256="004p5ai6rc5y8f6966k894jzw9v3m4zy36z50yapig7c85lzmzn7"; depends=[ggplot2]; }; ggnormalviolin = derive2 { name="ggnormalviolin"; version="0.1.2"; sha256="1gbv2b86nznw5bs05c4ns96b8hsxkhikhcf8syl2qbbafzy8vx6y"; depends=[dplyr ggplot2 magrittr scales]; }; ggnuplot = derive2 { name="ggnuplot"; version="0.1.0"; sha256="0i09ybmxdjyr15z1a651k3bkbqskri4ipcyjap93020zbfv05r9c"; depends=[ggplot2]; }; ggokabeito = derive2 { name="ggokabeito"; version="0.1.0"; sha256="07lbzq87zl2yswidp0f90l8szl7y4wwn8psgacyl90wn2gd9mdcp"; depends=[ggplot2]; }; ggpackets = derive2 { name="ggpackets"; version="0.2.1"; sha256="1fdyr0m5rf1wy2pydvk12g7lw338iw026rxz98mv8kryrs32q7kh"; depends=[ggplot2 rlang]; }; - ggpacman = derive2 { name="ggpacman"; version="0.1.0"; sha256="1040d6aciyllrpszh7l7y55fw4dx8cya2yvj0x4i2fibvygz83p6"; depends=[dplyr gganimate ggforce ggplot2 magrittr purrr rlang tidyr]; }; ggpage = derive2 { name="ggpage"; version="0.2.3"; sha256="1qi8ydq3fxb1smk0jg9z1cv2xjq8c1lsnmz8l7c61rvdbjm3710v"; depends=[dplyr ggplot2 magrittr purrr rlang stringr tidytext]; }; ggparallel = derive2 { name="ggparallel"; version="0.2.0"; sha256="0zxaff0jbqkbavsmh1yyp3vdrxsam6a66hjw8lamv9pksdw1s2wf"; depends=[ggplot2 plyr reshape2]; }; ggparliament = derive2 { name="ggparliament"; version="2.0.0"; sha256="04za4lm3lir95bgda1rzlsyil2fkac3j5f5f1pjw2samy6pjz80r"; depends=[dplyr ggplot2 rlang]; }; ggparty = derive2 { name="ggparty"; version="1.0.0"; sha256="0s6hr5p930kl3pj6ajwgwqz6yikc3l9hhzy1yn0nqc0r8pp2jyqf"; depends=[checkmate ggplot2 gtable partykit rlang survival]; }; ggpath = derive2 { name="ggpath"; version="1.0.0"; sha256="065h4yzg3x9c14393222vakskg3bzi5j6ys96wszls3sy35v1rvg"; depends=[cachem cli ggplot2 magick memoise rappdirs rlang]; }; - ggpattern = derive2 { name="ggpattern"; version="1.0.0"; sha256="09djvwdzvmqj6jk56vspbcvp598vkb9zvyvf83ym5mfp05yf3sf7"; depends=[ggplot2 glue gridpattern rlang scales]; }; + ggpattern = derive2 { name="ggpattern"; version="1.0.1"; sha256="1b9bfxlg64gr39bz58fp6jmg4nziwk8rk94rzpjsqhfhpwi2lrgr"; depends=[ggplot2 glue gridpattern rlang scales]; }; + ggpcp = derive2 { name="ggpcp"; version="0.2.0"; sha256="1xkxsxnxcyy8rrazzbl38g405cxjjjz6a720cdm4bsk03q2q4rar"; depends=[assertthat dplyr ggplot2 rlang tibble tidyr tidyselect]; }; ggperiodic = derive2 { name="ggperiodic"; version="1.0.2"; sha256="14x8gg54l18z12cgvka2qf1clhi8zlma5xb71yl4j32gbffhpybp"; depends=[data_table dplyr ggplot2 sticky tidyselect]; }; - ggpie = derive2 { name="ggpie"; version="0.2.4"; sha256="15r8cx07y0glwvb5xlqdkxfrxcwhwlp6w6ah13z96mgdpvqh0p3i"; depends=[cowplot dplyr ggnewscale ggplot2 ggrepel magrittr RColorBrewer rlang scales stringr tibble]; }; + ggpie = derive2 { name="ggpie"; version="0.2.5"; sha256="11c431ggrhyxiql1v9qajp568jri6hlp1kgl334j4f7sgyh73ng5"; depends=[dplyr ggnewscale ggplot2 ggrepel magrittr RColorBrewer rlang scales stringr tibble]; }; ggplot_multistats = derive2 { name="ggplot.multistats"; version="1.0.0"; sha256="1afzfa86vc484bcwpg7m1ky03jpax584rigzgai8w06pifkmz0il"; depends=[ggplot2 hexbin rlang scales]; }; - ggplot2 = derive2 { name="ggplot2"; version="3.3.6"; sha256="1aa377jdfajj8ld2fh159y8havlibsr4pjisf6mkzk8g5awlxjxz"; depends=[digest glue gtable isoband MASS mgcv rlang scales tibble withr]; }; + ggplot2 = derive2 { name="ggplot2"; version="3.4.0"; sha256="0gj7n2y8msnmhk3x4r481biknvn2dqhahwazfqwr8f3lz599wbx8"; depends=[cli glue gtable isoband lifecycle MASS mgcv rlang scales tibble vctrs withr]; }; ggplot2movies = derive2 { name="ggplot2movies"; version="0.0.1"; sha256="067ld6djxcpbliv70r2c1pp4z50rvwmn1xbvxfcqdi9s3k9a2v8q"; depends=[]; }; ggplotAssist = derive2 { name="ggplotAssist"; version="0.1.3"; sha256="1g0s1dkbrxmwqjqppagdbnx24s0nbjn09xwxix3dkfssz6drhala"; depends=[dplyr editData gcookbook ggplot2 ggthemes magrittr miniUI moonBook rstudioapi scales shiny shinyAce shinyWidgets stringr tibble tidyverse]; }; ggplotgui = derive2 { name="ggplotgui"; version="1.0.0"; sha256="1yfglg5438mwyml845isimzma5q6824x19jka509ng49bzmf1za0"; depends=[ggplot2 haven plotly RColorBrewer readr readxl shiny stringr]; }; @@ -9935,9 +9988,9 @@ in with self; { ggpol = derive2 { name="ggpol"; version="0.0.7"; sha256="11xr26kwmkjjb51wm44ydv0vcinc6k6faqwx4s2faj4iwidlys1m"; depends=[dplyr ggplot2 glue gtable plyr rlang tibble]; }; ggpolar = derive2 { name="ggpolar"; version="0.2.2"; sha256="18m0nd74cz30gr961404wnib5v2wddpf1iv453s5dri0vxlmdl6w"; depends=[ggplot2 rlang]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.2.0"; sha256="1ii9a0f0aniwf989n72dy9bh9f708qxhdy5xgml23ln6n4wf9wr0"; depends=[ggplot2]; }; - ggpp = derive2 { name="ggpp"; version="0.4.5"; sha256="02inwvfz2zxsj7bq0nz11c5spnyaf8zhjnlfllpwfjfy46qrx2p9"; depends=[dplyr ggplot2 glue gridExtra lubridate magrittr MASS polynom rlang scales stringr tibble xts zoo]; }; - ggprism = derive2 { name="ggprism"; version="1.0.3"; sha256="09dh0r8r5s61i5dbk6rswajc2vm7k8wvlqyvzq8wr160676lycjp"; depends=[digest ggplot2 glue gtable rlang scales tibble]; }; - ggpubr = derive2 { name="ggpubr"; version="0.4.0"; sha256="0x86lmghr25k8w90yrp360dn42dhp5cjvjpdiv2s2gxfn701xcmb"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr rlang rstatix scales tibble tidyr]; }; + ggpp = derive2 { name="ggpp"; version="0.5.0"; sha256="0zmxnzsdmwv9v77fifgiknalwif59261kslq8848x1xch8f82l77"; depends=[dplyr ggplot2 glue gridExtra lubridate magrittr MASS polynom rlang scales stringr tibble xts zoo]; }; + ggprism = derive2 { name="ggprism"; version="1.0.4"; sha256="0ycklp7764cw65hqh9r61im8vqfd7sjayyw1gvprxzg7k217gnl3"; depends=[digest ggplot2 glue gtable rlang scales tibble]; }; + ggpubr = derive2 { name="ggpubr"; version="0.5.0"; sha256="0fbm3rcpsabb7j7sdr69scqiq1bnx2623ji9ap9v4rmqqy8s08gv"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr rlang rstatix scales tibble tidyr]; }; ggpval = derive2 { name="ggpval"; version="0.2.5"; sha256="09wjfkmsh165xiw1dab6c8qb9wrnzm1q1sbfnbzyg99wsk480bgy"; depends=[data_table ggplot2]; }; ggquickeda = derive2 { name="ggquickeda"; version="0.2.2"; sha256="15rla5gi6m10dsmx501wfhs4lfa1wf007nimyr22qbcabd7277zc"; depends=[colourpicker dplyr DT Formula GGally ggbeeswarm ggplot2 ggpmisc ggpubr ggrepel gridExtra Hmisc markdown plotly quantreg rlang RPostgres scales shiny shinyFiles shinyjqui shinyjs stringr survival survminer table1 tidyr zoo]; }; ggquiver = derive2 { name="ggquiver"; version="0.3.2"; sha256="1nzqfm9byr0bmj0l6fdf8afymbhc6qjq5iff3wnng7gqqaa9s6dc"; depends=[ggplot2]; }; @@ -9945,37 +9998,39 @@ in with self; { ggraptR = derive2 { name="ggraptR"; version="1.3"; sha256="1i6jp0n1sz5b4sv3d4h5624zhlknih2qp6p2m2ri6s3gsh1pl9zz"; depends=[dplyr ggplot2 pacman purrr shiny]; }; ggrasp = derive2 { name="ggrasp"; version="1.2"; sha256="0jl4bmhsisqc7nam8r027lr1qp0yr6bvdiyycknp7bkl65cg2x1z"; depends=[ape bgmm colorspace ggplot2 mixtools]; }; ggrastr = derive2 { name="ggrastr"; version="1.0.1"; sha256="07sx5wlawfyb0zy5am2q1ajhkdym5r9ih47p57l8bv4dlc7ykml2"; depends=[Cairo ggbeeswarm ggplot2 png ragg]; }; - ggrcs = derive2 { name="ggrcs"; version="0.2.4"; sha256="193alhp305flr1pbpi7szp6i2h1idalfd4z7n2fpbhwnkdxpvhv4"; depends=[ggplot2 rms scales]; }; - ggrepel = derive2 { name="ggrepel"; version="0.9.1"; sha256="1z5xyr5f4aryy0v1gzz9m8m4s5fzzwbrf0fxll1nbflr8xnr3yr9"; depends=[ggplot2 Rcpp rlang scales]; }; + ggrcs = derive2 { name="ggrcs"; version="0.2.6"; sha256="1hvyvvm6nlgqfh7lmgqyqsi2gy43k5n5a6205hx85da9h9qw8n8s"; depends=[ggplot2 rms scales]; }; + ggredist = derive2 { name="ggredist"; version="0.0.2"; sha256="1p5bzqi4g5ri0m0nlwra6vps4sil7qc56cd8nzp0xh7k1gl598ig"; depends=[ggplot2 scales]; }; + ggrepel = derive2 { name="ggrepel"; version="0.9.2"; sha256="123lh86qs7w1i3v8i1a08jxlwx4sy32bpznyclm8wlkph728hc0a"; depends=[ggplot2 Rcpp rlang scales]; }; ggridges = derive2 { name="ggridges"; version="0.5.4"; sha256="0lfqx21g09s3fp74mld47qfx1nnav18xqj37griyqk406hh1rxrb"; depends=[ggplot2 scales withr]; }; ggrisk = derive2 { name="ggrisk"; version="1.3"; sha256="02df3gcviax747d33v30m97jsazj7zdpjnhypfy38cg70yxidwg9"; depends=[cutoff do egg ggplot2 nomogramFormula reshape2 rms set survival]; }; ggroups = derive2 { name="ggroups"; version="2.1.2"; sha256="0fb6awfm4vn67pgmz50fljvp9mfxx1q29pirgv04dya8751srxgi"; depends=[]; }; ggsci = derive2 { name="ggsci"; version="2.9"; sha256="0g73x6grbka7ahjh6z23m3wrcifp5rdfdiasbl8lq4sp6rplxwaa"; depends=[ggplot2 scales]; }; ggseas = derive2 { name="ggseas"; version="0.5.4"; sha256="1jpdijwll5l7bg7cmjnklkxffysi9ckzg50rw2a2cd00zwby11q9"; depends=[ggplot2 rlang seasonal zoo]; }; + ggsector = derive2 { name="ggsector"; version="1.6.6"; sha256="0qaf8wl1mmwl3razyif08sh329p9j1jgqc0ls5szqirq3db4315i"; depends=[dplyr ggplot2 magrittr Matrix prettydoc rlang Seurat tibble tidyr]; }; ggseg = derive2 { name="ggseg"; version="1.6.5"; sha256="0495g3l71lagrmz3s3lxy4rkfr7gin8vn1m59fvcv7hmycn39i0k"; depends=[dplyr ggplot2 sf tidyr vctrs]; }; ggseg3d = derive2 { name="ggseg3d"; version="1.6.3"; sha256="1rpq2wgyyladz5nkngkvbf3cy4pw212dj1vfh7ksh0bxi7v1k6mh"; depends=[dplyr magrittr plotly scales tidyr]; }; ggseqlogo = derive2 { name="ggseqlogo"; version="0.1"; sha256="13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"; depends=[ggplot2]; }; ggseqplot = derive2 { name="ggseqplot"; version="0.8.1"; sha256="1m4n4qfl21dafkl27ajvxj5vw99z9282qzcqk03z90nsnydbqm2r"; depends=[colorspace dplyr forcats ggh4x ggplot2 ggrepel ggtext glue patchwork purrr Rdpack tidyr TraMineR usethis]; }; - ggshadow = derive2 { name="ggshadow"; version="0.0.2"; sha256="08bnjl7zsa4kkjl4kadmwss84bngd36xqqly91lvv359qrzr9hzq"; depends=[ggplot2 glue rlang scales]; }; - ggside = derive2 { name="ggside"; version="0.2.1"; sha256="1vl7kzgmi5xxxsqvyg4cm4xwd3lfjgysay1lw6hri5vj22mnga5h"; depends=[ggplot2 glue gtable rlang scales tibble]; }; + ggshadow = derive2 { name="ggshadow"; version="0.0.5"; sha256="0cakz31hp97kdvdcyrp9p03nz81kypsn9sn6nxl7kb0n3rrrlav0"; depends=[cli ggplot2 glue rlang scales vctrs]; }; + ggside = derive2 { name="ggside"; version="0.2.2"; sha256="1z50z4xpxfpqdz26hja6xw3q403p00cr5qawjxl0qg4jixl7j65p"; depends=[ggplot2 glue gtable rlang scales tibble vctrs]; }; ggsignif = derive2 { name="ggsignif"; version="0.6.4"; sha256="02mjailzyqkdnzky60dgampw2sq6mnn7s66fk0lhy32s8apm280i"; depends=[ggplot2]; }; ggsn = derive2 { name="ggsn"; version="0.5.0"; sha256="04vnap83w06hbqqi5kgxmrdb3a13n5mcdk5lllymv6nrzvl84f2x"; depends=[ggmap ggplot2 maptools png sf]; }; ggsoccer = derive2 { name="ggsoccer"; version="0.1.6"; sha256="1b3cx2ym3pknshrxmdgwzyx92c1hl6kyvxm2s8izlaa21z8v6z59"; depends=[ggplot2]; }; ggsolvencyii = derive2 { name="ggsolvencyii"; version="0.1.2"; sha256="0jzj4iglgzwp6pfs5zr7mirdiqrrmbwdvl245b1fwf42rnxbqrq6"; depends=[dplyr ggplot2 magrittr tidyr]; }; ggsom = derive2 { name="ggsom"; version="0.4.0"; sha256="0qsih00rm3ng2zh6p2s7a35rh1qlvbkn82s53v765w60fjmhwkwf"; depends=[assertthat data_table dplyr entropy ggplot2 kohonen magrittr tibble tidyr]; }; - ggspatial = derive2 { name="ggspatial"; version="1.1.6"; sha256="0biisbbqgp5hfgkpvc88xf8xclq1hr95sxcv1jf819rm45ggmc9l"; depends=[abind ggplot2 glue rlang rosm scales sf tibble tidyr]; }; + ggspatial = derive2 { name="ggspatial"; version="1.1.7"; sha256="15v7g2ywxvy64ixl55j58qfzi41c7ykkh2ind4npf7n76q4ixpc3"; depends=[abind ggplot2 glue rlang rosm scales sf tibble tidyr]; }; ggspectra = derive2 { name="ggspectra"; version="0.3.9"; sha256="1x561b8vpiajj5icmcw99vcmkg451y7aimqzdz3vi8qmjmgshvi6"; depends=[ggplot2 ggrepel lubridate photobiology photobiologyWavebands rlang scales tibble tidyr]; }; - ggstance = derive2 { name="ggstance"; version="0.3.5"; sha256="0jz9vvnmcc6a38n8nzr458r65sna23bgn5r8mxdhzdlyqibihr7d"; depends=[ggplot2 plyr rlang withr]; }; - ggstar = derive2 { name="ggstar"; version="1.0.3"; sha256="0d96qsx0id82isaz62plkxwc8a6zcs19s1asyx316ciq9a325pr3"; depends=[ggplot2 gridExtra scales]; }; - ggstats = derive2 { name="ggstats"; version="0.1.0"; sha256="1ivkh5kni11ldwbgn322apcx4xqn6lhmh8g8fwq1cclr3w8pm12d"; depends=[broom_helpers cli dplyr forcats ggplot2 lifecycle magrittr scales tidyr]; }; - ggstatsplot = derive2 { name="ggstatsplot"; version="0.9.5"; sha256="0csgbqr8b9ar5x52y79fi91p6hpf4w94rj6pzl41a29d6x91d1fb"; depends=[correlation datawizard dplyr ggplot2 ggrepel ggsignif glue insight paletteer parameters patchwork performance purrr rlang statsExpressions tidyr]; }; + ggstance = derive2 { name="ggstance"; version="0.3.6"; sha256="0wk3gbi5365sndi02gwd4c33vcrj5p8cfwakwjg010y5hgxx96nd"; depends=[cli ggplot2 plyr rlang withr]; }; + ggstar = derive2 { name="ggstar"; version="1.0.4"; sha256="0m2knp1jf1x62nqd8ln4haw90jv69l7vjrhn4pdrywgmwhdrp8gd"; depends=[cli ggplot2 gridExtra scales]; }; + ggstats = derive2 { name="ggstats"; version="0.1.1"; sha256="1rjasjgyg64wcj2w701xkwg31rn2pirh2r5m7kj153k8gx3bx356"; depends=[broom_helpers cli dplyr forcats ggplot2 lifecycle magrittr scales tidyr]; }; + ggstatsplot = derive2 { name="ggstatsplot"; version="0.10.0"; sha256="1baph4gkih2f7wbgrr4xpcghmz9srzk1a5a8bi8r88217mx6ssjr"; depends=[correlation datawizard dplyr ggplot2 ggrepel ggsignif glue insight paletteer parameters patchwork performance purrr rlang statsExpressions tidyr]; }; ggstream = derive2 { name="ggstream"; version="0.1.0"; sha256="0d6g5916mfrg2srcqjhlpm4acp4g16vq9ks4x37yzkpr34vi5x7j"; depends=[dplyr forcats ggplot2 magrittr purrr tidyr]; }; ggstudent = derive2 { name="ggstudent"; version="0.1.1-1"; sha256="0qs27b4lksaaaspavkycbzf8cfjxjli7xrfjby71sl0lca3fwm1g"; depends=[dplyr ggplot2]; }; ggsurvey = derive2 { name="ggsurvey"; version="1.0.0"; sha256="1a50ac2546pxa35k59j4ih0csiyfjdgqfqwm3fb5ny7jx1mk0hmi"; depends=[dplyr ggplot2 hexbin survey]; }; - ggsurvfit = derive2 { name="ggsurvfit"; version="0.2.0"; sha256="0q7vg9sp1jwc29mdjwpp308h1wpzx6llriziql0w43lzxlrq34nl"; depends=[broom cli dplyr ggplot2 glue gtable patchwork rlang scales survival tidyr]; }; + ggsurvfit = derive2 { name="ggsurvfit"; version="0.2.1"; sha256="021gb8sdai7bsqjbq94bmzgszk2mibjdkg86rzm4grx8v91cr6lk"; depends=[broom cli dplyr ggplot2 glue gtable patchwork rlang survival tidyr]; }; ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; ggtea = derive2 { name="ggtea"; version="0.1.1"; sha256="04g8g17ziw13rxjzkvgy5yd0z15ypxk0b8fq2y1vk8acsqr2dv11"; depends=[ggplot2]; }; - ggtern = derive2 { name="ggtern"; version="3.3.5"; sha256="15hhn8msy0l8zbq8ms0zvg1iajn1c28gd77v3hp6dvwwsla8zzbd"; depends=[compositions ggplot2 gridExtra gtable hexbin latex2exp lattice MASS plyr proto scales]; }; + ggtern = derive2 { name="ggtern"; version="3.4.1"; sha256="0w0kg6755kfpczqpaly251fgqv31js9gdzr17x734l2adycji3yr"; depends=[compositions ggplot2 gridExtra gtable hexbin latex2exp lattice MASS plyr proto scales]; }; ggtext = derive2 { name="ggtext"; version="0.1.2"; sha256="10vrrxviv4yp9lqsanqvwsvbj64vn66hwm1w7860x1g58hf1g0l7"; depends=[ggplot2 gridtext rlang scales]; }; ggthemes = derive2 { name="ggthemes"; version="4.2.4"; sha256="0rw5f6axyz1pqn6qx9jwm38hjzn8bqs1nfjkvm96z3xnyn61cdbv"; depends=[ggplot2 purrr scales stringr tibble]; }; ggtikz = derive2 { name="ggtikz"; version="0.1.1"; sha256="1xrmarmils56myi2sgn6gy69dyqfgbp1bj49g3zzpr3pwby3gqvq"; depends=[dplyr ggplot2 stringr tikzDevice]; }; @@ -9989,21 +10044,22 @@ in with self; { ggwordcloud = derive2 { name="ggwordcloud"; version="0.5.0"; sha256="0mr92738s3j9wm6mkr5hd2flqsqw3vfjifv3fajsygysbwrl8dn8"; depends=[colorspace ggplot2 png Rcpp scales]; }; ggx = derive2 { name="ggx"; version="0.1.1"; sha256="13yvckny2b7b7rhgi28xm8379paskin78wm5095s1ily9a2dxgkg"; depends=[ggplot2 sets]; }; gh = derive2 { name="gh"; version="1.3.1"; sha256="1vqjhqlhvvqq8w2cqbgrkqphj0ga5s6fbl4zhcl3vc6fvsms5bpv"; depends=[cli gitcreds httr ini jsonlite]; }; + ghapps = derive2 { name="ghapps"; version="1.0.0"; sha256="12z234lc7iy8svnm37ybj9ym0zd3jq5q9fng9h7dxdw2p9id7y30"; depends=[gh jose openssl]; }; ghclass = derive2 { name="ghclass"; version="0.2.1"; sha256="0jpfc2mjwi6i3bcrfjjl6k4im4m110pq2n00mij2n9czz6v2chla"; depends=[base64enc cli dplyr fs gh glue httr lubridate purrr rlang tibble whisker withr]; }; ghcm = derive2 { name="ghcm"; version="3.0.0"; sha256="0byzi0q3amz7q6if0y54mk3wac0pycci9ypagr65p8rlhx04gqv3"; depends=[CompQuadForm MASS Rcpp refund]; }; ghibli = derive2 { name="ghibli"; version="0.3.3"; sha256="0kl98vxlk86jsqqklzcqr5a65lhqyday3vax374ai6pc24pjymcg"; depends=[prismatic]; }; ghql = derive2 { name="ghql"; version="0.1.0"; sha256="19awg98r2hwwwwrwh0166y8ij1clf58vrf02i8fhhfzddx3an6bz"; depends=[crul graphql jsonlite R6]; }; - ghyp = derive2 { name="ghyp"; version="1.6.2"; sha256="0ci3xz5v5r9vysfx2y3cgy706wssk9pw505mb57rb4yy0mhry19i"; depends=[MASS numDeriv]; }; + ghyp = derive2 { name="ghyp"; version="1.6.3"; sha256="0jc4rrw0ny0x15im2r9kyrlg9qdnljnbpg5pq4avy997nfdgyhav"; depends=[MASS numDeriv]; }; ghypernet = derive2 { name="ghypernet"; version="1.1.0"; sha256="0k4w37vnhpanpa80la8rscgimnnzzid5v59109xfbbz1xxx1bb49"; depends=[dplyr extraDistr numbers pbmcapply plyr purrr reshape2 rlang rootSolve texreg]; }; gibble = derive2 { name="gibble"; version="0.4.0"; sha256="19il4si7ch5jr7plr8qwv7jrc5kfkxmh5jrcdvbn688gxcnv7bs0"; depends=[dplyr rlang tibble]; }; - giedata = derive2 { name="giedata"; version="0.1.0"; sha256="0hz8kr1qsbg89icqvpx3d8rhi3vakhsnnq97jmnxj5d6s7c41qiv"; depends=[dplyr httr lubridate magrittr purrr]; }; + giedata = derive2 { name="giedata"; version="0.1.1"; sha256="19sr8phsay7bpqrbh776ms0aw9xgiv0x9knmn88ydzpkcdcd1z9j"; depends=[curl dplyr httr lubridate magrittr purrr]; }; gif = derive2 { name="gif"; version="0.1.0"; sha256="119d7q9xs6xpncv1r2w008kld9z07ckyj1kja9b8n2lnlb8532pk"; depends=[MASS Matrix Rcpp RcppEigen]; }; gifski = derive2 { name="gifski"; version="1.6.6-1"; sha256="1qfhg19iclsdyb583sf25fh7am951c7q53z1s64r3vv1ivdnn18k"; depends=[]; }; gifti = derive2 { name="gifti"; version="0.8.0"; sha256="1gb3x4rln9vayjd9fgzb434mm3dwcqgrvlv6rmh4b39mjfm73sly"; depends=[base64enc R_utils xml2]; }; giftwrap = derive2 { name="giftwrap"; version="0.0.4"; sha256="1zsw529h69x9yaq2csfws4iqn3mm39z34kwzj0b2y850wzbn2dvp"; depends=[namespace processx readr tibble]; }; gigg = derive2 { name="gigg"; version="0.2.1"; sha256="0qb8w455a8wxc5ljmydq4xag2kbj5yk06an0pd9hd4k48wssg8la"; depends=[BH Rcpp RcppArmadillo]; }; gim = derive2 { name="gim"; version="0.33.1"; sha256="1km8pyr1qfzffm33ihhlgvc0qxgxxfi161vkrz77d1b7jkpdyxjj"; depends=[numDeriv]; }; - gimme = derive2 { name="gimme"; version="0.7-8"; sha256="1rapjjivhpj1fv9p9wcdvgzz2vjlsmndi3kkpyhn0sqvycyb2453"; depends=[aTSA data_tree igraph imputeTS lavaan MASS MIIVsem mvtnorm nloptr qgraph]; }; + gimme = derive2 { name="gimme"; version="0.7-9"; sha256="1z6rqgk42p1zzf5vjz6hbzpnpal5mvhfbv30g8n7shnxpim7zakv"; depends=[aTSA data_tree igraph imputeTS lavaan MASS MIIVsem mvtnorm nloptr qgraph]; }; gimmeTools = derive2 { name="gimmeTools"; version="0.1"; sha256="1g170rz3c3qx27yy67f7xab4gkm0pbbvwlwkcsczfxphad609ryl"; depends=[easycsv magrittr miniUI rhandsontable rintrojs rstudioapi shiny shinyjs shinyWidgets]; }; gimms = derive2 { name="gimms"; version="1.2.1"; sha256="1ykc8ji8cyrz5vg9if7lzx5iqm5wvabcyaigfvh014w82i12pfg8"; depends=[curl Kendall ncdf4 raster zyp]; }; giphyr = derive2 { name="giphyr"; version="0.2.0"; sha256="0273f7lama8bhaalafs66m6ksp32vx0j6rmh1qr4484i7wkmdfqn"; depends=[dplyr httr miniUI purrr rstudioapi shiny tibble]; }; @@ -10039,11 +10095,11 @@ in with self; { gld = derive2 { name="gld"; version="2.6.6"; sha256="1i7xpyxd7r1fkjy9zkzd3rfsnb35v5c5fkafs1zd9d8729wfj8za"; depends=[e1071 lmom]; }; gldrm = derive2 { name="gldrm"; version="1.5"; sha256="1mbdxqjw6sa47kigwrjq1gn6vi36zhg9j2lck144iwa10ms0y9xp"; depends=[]; }; glinternet = derive2 { name="glinternet"; version="1.0.12"; sha256="0aphdscj0s6kqxlkgqkw2d6snrylz6hiis6307pl8ldh7q5cvm33"; depends=[]; }; - glinvci = derive2 { name="glinvci"; version="1.1.18"; sha256="0bsyiy3q86xbjgpka8j4fg55a0wjxm9p0vb2a1b88q8bx8zs7w4b"; depends=[ape BB lbfgsb3c numDeriv plyr Rcgmin rlang]; }; + glinvci = derive2 { name="glinvci"; version="1.1.21"; sha256="114fxkn271askxqjnzk0pd3s11n0r9qw1nfxpnqq332hv3skl2h8"; depends=[ape BB lbfgsb3c numDeriv plyr Rcgmin rlang]; }; gllm = derive2 { name="gllm"; version="0.38"; sha256="06sq7yk11rbqj8i900ss987fg9b232cirjxhdm1yl9xqz4inxvlg"; depends=[]; }; gllvm = derive2 { name="gllvm"; version="1.3.1"; sha256="1im5q5137jf8cwpydy6p8lip9v43fvgb5hi11ff2wwhc9yw74gyd"; depends=[fishMod MASS Matrix mgcv mvabund RcppEigen statmod TMB]; }; glm_deploy = derive2 { name="glm.deploy"; version="1.0.4"; sha256="1akklvbhz2pp0sv1hax1jq0s9ajbfv1597z643gh5l9hwizj2h9m"; depends=[Rcpp]; }; - glm_predict = derive2 { name="glm.predict"; version="4.1-0"; sha256="10grj73lwiv1czim787vq5h4cyn3xl028rs3a8l3l4vbg8z7y6py"; depends=[AER dfidx MASS mlogit nnet survey survival]; }; + glm_predict = derive2 { name="glm.predict"; version="4.2-0"; sha256="1696zjn6mqxvvzvbg282p2rxy2r81v46gx1vv0hxkphcrarv4dxs"; depends=[AER dfidx lme4 MASS mlogit nnet survey survival]; }; glm2 = derive2 { name="glm2"; version="1.2.1"; sha256="1byqlvpls23gzy7xlbs1kgfr4bsrmsrpc8rzzacf9czap1nlw39y"; depends=[]; }; glmbb = derive2 { name="glmbb"; version="0.5-1"; sha256="1jy77z5fr781rm5mx6kszwi2zlvnpfwi24fn9vw1kza4jzcw9pjw"; depends=[digest]; }; glmc = derive2 { name="glmc"; version="0.3-1"; sha256="0x6jk2l5rpjkp5x815gpiwv8maa7mhmy6m8gaxbv1cbn3zyccynn"; depends=[emplik]; }; @@ -10059,10 +10115,10 @@ in with self; { glmmML = derive2 { name="glmmML"; version="1.1.4"; sha256="0xs6vn245y32pshlslblrj6517dwwmk0ffp2rzji8d8h0lsxidxx"; depends=[]; }; glmmPen = derive2 { name="glmmPen"; version="1.5.1.10"; sha256="0qgmyp708qm8pvb62bw8qqk5is1bdbkwmkf0f3cn6z4hkjfgjfns"; depends=[BH bigmemory ggplot2 lme4 MASS Matrix mvtnorm ncvreg Rcpp RcppArmadillo RcppEigen reshape2 rstan rstantools StanHeaders stringr]; }; glmmSeq = derive2 { name="glmmSeq"; version="0.5.5"; sha256="182pgwqqbgpkcvapkps7ahxa4ppic44j10081q0v9lp2cjdiv4qy"; depends=[car ggplot2 ggpubr glmmTMB lme4 lmerTest MASS pbapply pbmcapply plotly qvalue]; }; - glmmTMB = derive2 { name="glmmTMB"; version="1.1.4"; sha256="1ldly6qn8iwqr41ndqlwsdz4v2n36giavsmx33vybn9g7r2fq4m7"; depends=[lme4 Matrix nlme numDeriv RcppEigen TMB]; }; + glmmTMB = derive2 { name="glmmTMB"; version="1.1.5"; sha256="1yh8q0l3l8hm408k8khjj1hff3nkqx0wq6a41fddwfmrq1alfjrk"; depends=[lme4 Matrix nlme numDeriv RcppEigen TMB]; }; glmmfields = derive2 { name="glmmfields"; version="0.1.4"; sha256="0gnb2s34xz7cjyaa2w2wq7n6c5016a14mc03kalvwdv3f7b98zan"; depends=[assertthat BH broom broom_mixed cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen reshape2 rstan rstantools StanHeaders tibble]; }; - glmmrBase = derive2 { name="glmmrBase"; version="0.1.2"; sha256="04xhp70wnxhfkbj7zqkyvggll22gwdm1fhhg6dg0kn7xmklkbjp3"; depends=[Matrix R6 Rcpp RcppArmadillo RcppParallel]; }; - glmnet = derive2 { name="glmnet"; version="4.1-4"; sha256="1y80a3b5s24ywhlil3r7b3a0vs9j59d7jkxrqa8zz09x1c5ggc7n"; depends=[foreach Matrix Rcpp RcppEigen shape survival]; }; + glmmrBase = derive2 { name="glmmrBase"; version="0.2.3"; sha256="0anf428nv1h3xabn0268kr6miwiwcsrmscdhnjbfkp6ckd5247hc"; depends=[digest Matrix R6 Rcpp RcppEigen]; }; + glmnet = derive2 { name="glmnet"; version="4.1-6"; sha256="0c3y9g3k0f0yclcffxzgfhfylb3py0iydhyspcjdrl44lb7cdi5y"; depends=[foreach Matrix Rcpp RcppEigen shape survival]; }; glmnetSE = derive2 { name="glmnetSE"; version="0.0.1"; sha256="0qj3c8qrx3vl0dr9prravfjwzqv1yfi771xfss9d44wlvjz5f4gp"; depends=[boot glmnet]; }; glmnetUtils = derive2 { name="glmnetUtils"; version="1.1.8"; sha256="1k8ivzjgpkm2a948qxx3wmkhlppbk31qc76spv2pscmp24x0lxyn"; depends=[glmnet Matrix]; }; glmnetcr = derive2 { name="glmnetcr"; version="1.0.6"; sha256="0cs0yj2js0920iggcw2vci5y9hnsm3hd7wpd7mwnx8mszwrklawg"; depends=[glmnet]; }; @@ -10077,24 +10133,24 @@ in with self; { glmvsd = derive2 { name="glmvsd"; version="1.5"; sha256="0im3143xvlsgkknsjnifx9zh7jsdm9bsmgiwrk0r2iil2ns22wgy"; depends=[brglm glmnet MASS ncvreg]; }; glmx = derive2 { name="glmx"; version="0.1-3"; sha256="0wfwzc6r5xcaaz6knj2chzwjvryfigpazrbd0kn82k0mprsm1vqz"; depends=[Formula lmtest MASS sandwich]; }; glmxdiag = derive2 { name="glmxdiag"; version="1.0.0"; sha256="0m077j7prjc38yshq8ahprfsai0rc20qma2njjbdi975mrwxi25c"; depends=[VGAM]; }; - globalKinhom = derive2 { name="globalKinhom"; version="0.1.4"; sha256="0ah05yl0fxiih3lfh8gxls01ikanwg3z8npbgv625zjfrqp1qwsw"; depends=[spatstat_core spatstat_geom spatstat_random]; }; + globalKinhom = derive2 { name="globalKinhom"; version="0.1.5"; sha256="1a1y6nhwgwf14ajagz7qllncw3hvhs2fs0nmf46wypvxplnicjaf"; depends=[spatstat_explore spatstat_geom spatstat_random]; }; globalOptTests = derive2 { name="globalOptTests"; version="1.1"; sha256="0yf4p82dpjh36ddpfrby7m3fnj2blf5s76lncflch917sq251h4f"; depends=[]; }; - globals = derive2 { name="globals"; version="0.16.1"; sha256="158y39qv99f1kc2i7w8d4lm2ls96plb43fzamz31im9xb9bkmxpp"; depends=[codetools]; }; + globals = derive2 { name="globals"; version="0.16.2"; sha256="02kpdlrx1bannaixz03c0f7bii9g36iy2nw779mfgi56byljcb38"; depends=[codetools]; }; globaltrends = derive2 { name="globaltrends"; version="0.0.12"; sha256="1a9zl12zcy4qzs89vda8zhgqx97fkj0xi9xacbavr0is7k8s7hjp"; depends=[DBI dbplyr dplyr forcats forecast ggplot2 glue gtrendsR ineq lubridate maps purrr rlang RSQLite stringr tibble tidyr WDI zoo]; }; globe = derive2 { name="globe"; version="1.2-0"; sha256="0xa0q5dac0g7xdlr679f3km8nqxlm7gi4msp9fbfivfvy0rmri96"; depends=[]; }; glogis = derive2 { name="glogis"; version="1.0-2"; sha256="15zk11p10v8fmqvmg9gdhxa0h6s5axvmdkxkpwrg8sgp2ln94fr9"; depends=[sandwich zoo]; }; glossr = derive2 { name="glossr"; version="0.6.1"; sha256="0lwwsnpcgnbagzqxnlp69z8cg0p40lvrjy31kyg80lrh14p94sxa"; depends=[cli dplyr flextable knitr magrittr purrr rlang stringr tibble tidyr]; }; glottospace = derive2 { name="glottospace"; version="0.0.112"; sha256="1bgyxki16mh38pw1476hq9f9r2899vs6ax7dsyrn1xzcad6x91y3"; depends=[dplyr ggplot2 magrittr purrr readxl rlang rnaturalearth rnaturalearthdata sf tibble tidyr tmap units writexl]; }; glow = derive2 { name="glow"; version="0.10.1"; sha256="1br29hy5j30k5q4xk1dglxlhqalhm76hnx8xg73v6whcg5j11392"; depends=[ggplot2 R6 Rcpp RcppEigen RcppParallel scales]; }; - glpkAPI = derive2 { name="glpkAPI"; version="1.3.3"; sha256="07bksiqmq2n7ki3f3sxph4v44k7q2b0d88jwjgfxzdn33i65wqyq"; depends=[]; }; + glpkAPI = derive2 { name="glpkAPI"; version="1.3.4"; sha256="1cr40jksm27h0j1j0q1ngcf4cbrhrjz48m6z3c3jns8h17h8g8qh"; depends=[]; }; glue = derive2 { name="glue"; version="1.6.2"; sha256="1gzxk5jgdh2xq9r7z09xs306ygzf27vhg3pyfl7ck1755gqii9cx"; depends=[]; }; - gluedown = derive2 { name="gluedown"; version="1.0.4"; sha256="1rvaac27kc4mppmw9kdwjaqsa7lwfzwffv63c8cky1z0xrsc5zz1"; depends=[glue magrittr]; }; + gluedown = derive2 { name="gluedown"; version="1.0.6"; sha256="1rvkgfsjlp9zrpgb0kvr2n6wfja5j1yz62sc9kmbizbph6yvrins"; depends=[glue magrittr]; }; gluvarpro = derive2 { name="gluvarpro"; version="7.0"; sha256="04npfllnl0x7w8z693p4zixgkrcvvvjbp9047b231pbldfirx0hy"; depends=[ggplot2 gridExtra pracma scales tidyr zoo]; }; glvmfit = derive2 { name="glvmfit"; version="0.1.0"; sha256="1nb34dm4m0nq7cr9f9jsacnk0xjv451m419sdwbk11ykpqkh9cdk"; depends=[]; }; glycanr = derive2 { name="glycanr"; version="0.4.0"; sha256="1ic2v2dim0a8kzl38vx8an80jrbzimng0plrx62a1ps1jnczihl9"; depends=[coin dplyr ggplot2 tidyr]; }; gm = derive2 { name="gm"; version="1.0.2"; sha256="1g0frcfk2ybhhz0sixdmj8h3z61acaxs10ybja60q91mxlyix2zx"; depends=[base64enc glue htmltools knitr magick magrittr MASS rlang rstudioapi stringr]; }; gmDatabase = derive2 { name="gmDatabase"; version="0.5.0"; sha256="0prap4a8pvylmvakd2ii87jz9bqf0vvfsxdi4iwa40nx444hqhx2"; depends=[DBI digest foreach RMySQL shiny]; }; - gmGeostats = derive2 { name="gmGeostats"; version="0.11.1"; sha256="0dbvvd9ab6ik5a9fhzk6md4y5lbjib4axhml0i09w1kd3p4y55jy"; depends=[boot compositions foreach gstat RColorBrewer sp]; }; + gmGeostats = derive2 { name="gmGeostats"; version="0.11.2"; sha256="182sqhlnvax09jbz53bfgp9wr9f309y84zk6dfgkj8la5yz273ni"; depends=[boot compositions foreach gstat RColorBrewer sp]; }; gma = derive2 { name="gma"; version="1.0"; sha256="08hxbs9z4vq5zjis0lgdcvlysaj1k7i0icdk3wsyqf3wd9znsibi"; depends=[car MASS nlme]; }; gmailr = derive2 { name="gmailr"; version="1.0.1"; sha256="1cfirp7a5jg9mprzj55ppyag4l527l8czrq4a1cxc8qrm8kpzx0b"; depends=[base64enc crayon gargle httr jsonlite lifecycle magrittr mime rematch2]; }; gmapsdistance = derive2 { name="gmapsdistance"; version="4.0.0"; sha256="1qi9xsm0izkgj1lfg353lsg4hl0gz0jadkygrbyimpiqcfl9w6jg"; depends=[RCurl XML]; }; @@ -10105,11 +10161,12 @@ in with self; { gmm = derive2 { name="gmm"; version="1.7"; sha256="12lg2j67z7s75fk9l8npiv8g8mz4rhvhrq7lc2d49jj4wsipah0r"; depends=[sandwich]; }; gmnl = derive2 { name="gmnl"; version="1.1-3.2"; sha256="01pviab3gyvjdlv5jy7wzp33909znhpn47kar55bwkm6gm3bdlg8"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; gmodels = derive2 { name="gmodels"; version="2.18.1.1"; sha256="158y7yh4maawn9vki8cq4sil48xib2bbpl6qgj5gvlkw3c14hzfs"; depends=[gdata MASS]; }; - gmp = derive2 { name="gmp"; version="0.6-7"; sha256="119z6q3xca1ysdpjfmq3crplj355vlwggxvqh2gs4yi63xlzwcv3"; depends=[]; }; + gmp = derive2 { name="gmp"; version="0.6-8"; sha256="0fba80f28fcb2w2spiy6wg7dr5cz7w6gf9z3yrkc6p60zbxdaccf"; depends=[]; }; gmpoly = derive2 { name="gmpoly"; version="1.1.0"; sha256="0rlmwlxyg9b8gqyrc7mbqv7x86v9pqj51pd847raq7x1smjnz1kg"; depends=[english gmp mvp purrr]; }; gms = derive2 { name="gms"; version="0.4.0"; sha256="1m7bhy4vsz6l09pal9ibjlskmbyjmc29hqwjim1x8yansd5bxpzv"; depends=[dplyr rlang stringr yaml]; }; gmt = derive2 { name="gmt"; version="2.0.3"; sha256="1clnhwxn1z1iyzx9ps9rkfv2xqdyqc73mcc77ysmlg5cncvm1hac"; depends=[]; }; gmvarkit = derive2 { name="gmvarkit"; version="2.0.5"; sha256="10wb9gk5l8jhq55rxcyqbq6jmcd6xzfabg9x5hfmss34d0gdv7vb"; depends=[Brobdingnag gsl mvnfast pbapply]; }; + gmvjoint = derive2 { name="gmvjoint"; version="0.1.0"; sha256="1c2w4c4hvk554m8vsi5fz8j5fyn2rav1r1wqbzvpmqqxbqmzbm4y"; depends=[glmmTMB MASS Matrix mvtnorm pracma Rcpp RcppArmadillo statmod survival]; }; gmwmx = derive2 { name="gmwmx"; version="1.0.2"; sha256="1h6p581cgz739hvdlr0kn3h981mhlklngfvzbkm7f9g5abaqa2nb"; depends=[fs longmemo ltsa Matrix Rcpp RcppArmadillo rjson stringi wv]; }; gnFit = derive2 { name="gnFit"; version="0.2.0"; sha256="0cji4zjslh18dfj0l827r6br4hx2f0akiaxrg7fhhyyyhgdcjnsm"; depends=[ismev rmutil]; }; gnlm = derive2 { name="gnlm"; version="1.1.1"; sha256="1krbz791l5qc06sh6my0bkq420b5afncw87lhyx1yiml2yg46zrk"; depends=[rmutil]; }; @@ -10120,6 +10177,7 @@ in with self; { gnrprod = derive2 { name="gnrprod"; version="1.0.0"; sha256="0ndrw2ym0f9m593q51lf069nf6fasrwb3psv1qr914jpm6vcp9di"; depends=[data_table]; }; gnumeric = derive2 { name="gnumeric"; version="0.7-8"; sha256="0iwl00mzsg8h8q67bjp6485idjlmj24362b1rbmkifckss8hrc98"; depends=[XML]; }; go2bigq = derive2 { name="go2bigq"; version="1.0"; sha256="007sk6i10phxfmrgn03pa43ixfp1v27nxyvgmhzwrj5l9b532f0d"; depends=[gmp Rmpfr]; }; + goalp = derive2 { name="goalp"; version="0.3.1"; sha256="1xr9bgizzsjr4nn41q1zi049wg9cw6qril60bri96x0xgc00qdpz"; depends=[lpSolve]; }; goeveg = derive2 { name="goeveg"; version="0.5.1"; sha256="1dg0aw3sfar706jyiy5m5qz3nzs6sy3ljs9jp0p65b0v01rw8sbs"; depends=[fields Hmisc mgcv vegan]; }; gofCopula = derive2 { name="gofCopula"; version="0.4-1"; sha256="17bdrn8xsqjz64caa5wdigkv798i18gc2f9jiin1bz840bqn1abg"; depends=[copula crayon doSNOW foreach MASS numDeriv progress R_utils SparseGrid VineCopula yarrr]; }; gofar = derive2 { name="gofar"; version="0.1"; sha256="10c1qgmkdhzxk9m2sd0xxww453y9lf5vjsrbmrbzbln91i6svy8j"; depends=[glmnet magrittr MASS Rcpp RcppArmadillo rrpack]; }; @@ -10134,7 +10192,6 @@ in with self; { goldilocks = derive2 { name="goldilocks"; version="0.3.0"; sha256="1h16kfalyklc7i3rix1ml83wjcbi9wv3z3rwxa83gp2h6nfpzpwl"; depends=[dplyr fastlogranktest pbmcapply PWEALL rlang survival]; }; golem = derive2 { name="golem"; version="0.3.5"; sha256="0rjkl1r83h0hcn30zssx64qm07sdx3g4v5rdxn56gbzfghw7ddcl"; depends=[attempt cli config crayon desc fs here htmltools pkgload roxygen2 rstudioapi shiny usethis yaml]; }; gomms = derive2 { name="gomms"; version="1.0"; sha256="1i9d5y28wrhal990x7xxy99v3z9y2pzlakj7wnynd3dpx5pqr0jj"; depends=[]; }; - gompertztrunc = derive2 { name="gompertztrunc"; version="0.1.0"; sha256="1qcx4s4lz2gsjr0nmwaih7pdh2anibrri7zfpsrl65lndkwy6hg4"; depends=[broom cowplot data_table dplyr flexsurv ggplot2 ggsci magrittr modelr rlang stringr tibble tidyr]; }; gontr = derive2 { name="gontr"; version="1.1.0"; sha256="0asvpc3nizcn7cqdxr1j9hvhprmrazd8c7a2svhmln4vg9x1zzkp"; depends=[]; }; good = derive2 { name="good"; version="1.0.1"; sha256="0lgp8kpdiaprq78fzny5c344m2s1vb24y9x9m8rkg1kd769h56pv"; depends=[copula maxLik plyr]; }; goodpractice = derive2 { name="goodpractice"; version="1.0.4"; sha256="039ivcb54v58fic8sy445s053yii34nzb170yn3fz6662ik8m8ax"; depends=[clisymbols covr crayon cyclocomp desc jsonlite lintr praise rcmdcheck rstudioapi whoami withr xml2 xmlparsedata]; }; @@ -10152,12 +10209,13 @@ in with self; { googlePubsubR = derive2 { name="googlePubsubR"; version="0.0.3"; sha256="114yhhqjpg7khgq82y1qdpnm6pbqinlgwh5n1lx6fzsm1ajhl0kv"; depends=[cli googleAuthR magrittr]; }; googleTagManageR = derive2 { name="googleTagManageR"; version="0.2.0"; sha256="0ia3ndz5vf3bc5kckyxwn71nngml6p67v8r3n6h79s12xn9jzylg"; depends=[assertthat dplyr future googleAuthR httr jsonlite purrr]; }; googleVis = derive2 { name="googleVis"; version="0.7.0"; sha256="1s82xcs6zrlmnhay764bspzwvabfyi35nq6fwdrrk3v79q13c5jz"; depends=[jsonlite]; }; - googleadsR = derive2 { name="googleadsR"; version="0.1.2"; sha256="1f934i4b5sfpwfhg8w2jbmlqid4h5kyzrlicsw1la7ap0b22fn0z"; depends=[jsonlite]; }; + googleadsR = derive2 { name="googleadsR"; version="1.0.0"; sha256="02zr7y485bpp11z9njcb3c07aw454pvf8zsdqb4qswps6l1ni0gc"; depends=[jsonlite]; }; googledrive = derive2 { name="googledrive"; version="2.0.0"; sha256="09jsiknzyfgxd0nzdr3wrrjw24allch2x74h96qg8vh8dad4cp30"; depends=[cli gargle glue httr jsonlite lifecycle magrittr pillar purrr rlang tibble uuid vctrs withr]; }; googleformr = derive2 { name="googleformr"; version="0.0.3"; sha256="0smykcjyqmk61ws5jk462l8x5hg0h9nwq55q5pqfgcq1j3yfniqh"; depends=[httr rvest xml2]; }; googlenlp = derive2 { name="googlenlp"; version="0.2.0"; sha256="0d0g18i3im2s5f14k69ym3vwf9a7zkaval3nwrip97xcl6kf4x9h"; depends=[dplyr httr jsonlite purrr readr rlang]; }; googler = derive2 { name="googler"; version="0.0.1"; sha256="1aayji3ncqxl58k29d93dbx05s9rp9bc63fl2cpl1cys7gilblxx"; depends=[jsonlite tibble]; }; googlesheets4 = derive2 { name="googlesheets4"; version="1.0.1"; sha256="14b5lzn6vjn72mw7vf3lzm2ppbjf0wr0n6sw0v5r6h4lk37cnki8"; depends=[cellranger cli curl gargle glue googledrive httr ids magrittr purrr rematch2 rlang tibble vctrs]; }; + googletraffic = derive2 { name="googletraffic"; version="0.1.0"; sha256="14wpra27z4jqgyc9mzfjh4k0f6z3cdp01fbv833ld11l5ays0qnb"; depends=[dplyr googleway htmlwidgets plotwidgets png raster sf sp stringr webshot]; }; googleway = derive2 { name="googleway"; version="2.7.6"; sha256="07jyawybdrfb7rzxba6mqlz98slv6j1bdqv5lqc06zf5x84r0wwd"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr scales shiny viridisLite]; }; goric = derive2 { name="goric"; version="1.1-2"; sha256="004nx29wz191rp0naa73r762bf6lap931lwrxifhz7izl47jzfj0"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; gorica = derive2 { name="gorica"; version="0.1.2"; sha256="0id0xqdw4rwqviym8l0a5gnl5a68ci5f4gn4bhywmzb6fh1nxj33"; depends=[bain lavaan limSolve lme4 MASS mvtnorm quadprog]; }; @@ -10170,7 +10228,7 @@ in with self; { goxygen = derive2 { name="goxygen"; version="1.0.3"; sha256="0825zl16ap0k3jqhrjw4hfsw97ils77jmf4yqq347k3bb8i3dm79"; depends=[citation gms pander stringi yaml]; }; gpairs = derive2 { name="gpairs"; version="1.3.3"; sha256="08m1ydrr239vnhjbl47mng3i2w9bqmd8fijrwsraq5ysvn826n27"; depends=[barcode colorspace lattice MASS vcd]; }; gpbStat = derive2 { name="gpbStat"; version="0.3.5"; sha256="1inmh8r02fn48p2f150d3prxlkf61549027vc64a3kyyk5q167ib"; depends=[data_table dplyr magrittr]; }; - gpboost = derive2 { name="gpboost"; version="0.7.9"; sha256="1xvm0z132dn5in3j06qz4bsixa8dw215amrvlbb4g7dkg2934am4"; depends=[data_table Matrix R6 RJSONIO]; }; + gpboost = derive2 { name="gpboost"; version="0.8.0"; sha256="066qd921pxcb2frlnia7zdldg49rgd5qrpk2gzkbxcklmjf8j923"; depends=[data_table Matrix R6 RJSONIO]; }; gpclib = derive2 { name="gpclib"; version="1.5-6"; sha256="11jjgg74l8hy9jz4jylhriqnzv8jcf12y1bkx22v29z3fhgkwkps"; depends=[]; }; gpg = derive2 { name="gpg"; version="1.2.8"; sha256="1yysjv335mq6lpdc01yiv56zhs0085bdlanh74k3ahjbszh9cy27"; depends=[askpass curl]; }; gpindex = derive2 { name="gpindex"; version="0.4.3"; sha256="1msbp424100agcmrwiirb2i1p5q6n0nfjwysyzh08p8c6c85i4vv"; depends=[]; }; @@ -10178,13 +10236,13 @@ in with self; { gplite = derive2 { name="gplite"; version="0.13.0"; sha256="0nxms34dfmbi3rz6x0yz8pn9a1v6w4k2w6jz1qrbqclmlg66g8vs"; depends=[Matrix Rcpp RcppArmadillo]; }; gplm = derive2 { name="gplm"; version="0.7-4"; sha256="0apvj14nl5qbi4dhhdx5nih5lvjwfcipvr8cyk6xsz4r5gfr2iw4"; depends=[AER]; }; gplots = derive2 { name="gplots"; version="3.1.3"; sha256="05k7a8x62qs5g6mps62vb3mwjdnfjzvjb20yws3x0r2j42g3p1cz"; depends=[caTools gtools KernSmooth]; }; - gplsim = derive2 { name="gplsim"; version="0.9.2"; sha256="1gkirnjjlja4z2ynrjc83wqf4q7zib44jgfsljpxmlala797qp7f"; depends=[mgcv minpack_lm]; }; + gplsim = derive2 { name="gplsim"; version="0.9.3"; sha256="16xanzrapz0gnbd4zm6jm305w00c3qspcvjq7vw2r4zry0sr96pa"; depends=[mgcv minpack_lm]; }; gpmap = derive2 { name="gpmap"; version="0.1.2"; sha256="1n1r4rda9v4zw8zz4vcagmkkpgirwydhqz36pyq0assxwclnkcz0"; depends=[foreach ggplot2 isotone plyr]; }; gppm = derive2 { name="gppm"; version="0.2.0"; sha256="1n9is3xj52lsck2fiy9j320p2ca6ib36s251i7g3iz99a77b0ahh"; depends=[ggplot2 ggthemes MASS mvtnorm Rcpp rstan]; }; gprofiler2 = derive2 { name="gprofiler2"; version="0.2.1"; sha256="0r0h34b35xzgd9rh55yndn0anxy0z45zdlqa6qfmpn91b6v1bb1g"; depends=[crosstalk dplyr ggplot2 gridExtra jsonlite plotly RCurl tidyr viridisLite]; }; gpx = derive2 { name="gpx"; version="1.1.0"; sha256="0x9b3mnbrim690l4wnyzk47bgywvnw4h4l8qznnx7zkpqib2hn5i"; depends=[lubridate rvest xml2]; }; gqlr = derive2 { name="gqlr"; version="0.0.2"; sha256="0gzhqyrbnz3qjzkr4slryrlfhlaxm474y9fahlj0sb0hvcx68pxj"; depends=[graphql jsonlite magrittr pryr R6]; }; - gquad = derive2 { name="gquad"; version="2.1-1"; sha256="19k7cqp2j5vb6m9hxdm951wfjh6nsswb64pdz9g93ypcqrg02wa4"; depends=[ape seqinr]; }; + gquad = derive2 { name="gquad"; version="2.1-2"; sha256="09hcs2lgqnim29gpd805b5ndxi22z2xwsf25rb1zckxf9c7bn7sj"; depends=[ape seqinr]; }; grImport = derive2 { name="grImport"; version="0.9-5"; sha256="0pbzc45wgp0cpycnw0bzn65ckdszzay0zrp7c7ssxdkifp8bai3a"; depends=[XML]; }; grImport2 = derive2 { name="grImport2"; version="0.2-0"; sha256="19q0dd8fpp1g4xf6sg5f8dxybwxjfw553ra6wgjd8b74fzca40m1"; depends=[base64enc jpeg png XML]; }; grPipe = derive2 { name="grPipe"; version="0.1.0"; sha256="0m9zxnmg8gfzridzk4lhhp1gw3nrygarn90ppwyi67bqdpp5hkfh"; depends=[DiagrammeR DiagrammeRsvg dplyr magrittr png rsvg]; }; @@ -10209,15 +10267,15 @@ in with self; { grapherator = derive2 { name="grapherator"; version="1.0.0"; sha256="071by9b8figbsf4g0f8a8mgcdksjksc57mnlgggilw7py1yjnjlh"; depends=[BBmisc checkmate deldir ggplot2 lhs reshape2 vegan]; }; graphframes = derive2 { name="graphframes"; version="0.1.2"; sha256="1bv7d0sggwab4rd486ayw9gkb5ja5p5fin5pn92xnrmz8cgwsfxq"; depends=[forge sparklyr tibble]; }; graphhopper = derive2 { name="graphhopper"; version="0.1.2"; sha256="1zrnwh86jv37z07b6l1i94dgjn8k3b3a3f76gfjsyyxvlc64i76x"; depends=[dplyr googlePolylines httr jsonlite magrittr tibble]; }; - graphicalExtremes = derive2 { name="graphicalExtremes"; version="0.1.0"; sha256="1cc4xcb72yci2gq2zn3g1nh3ba802anpymm0hajdbz3kb0wz1gyn"; depends=[igraph matrixcalc mvtnorm Rdpack]; }; + graphicalExtremes = derive2 { name="graphicalExtremes"; version="0.2.0"; sha256="00nfm6dkmx9cv9j6462vvkd72x72r4yyibg5hh9jifnss9p7smjh"; depends=[corpcor edmcr glassoFast glmnet igraph mvtnorm osqp Rdpack]; }; graphicalVAR = derive2 { name="graphicalVAR"; version="0.3"; sha256="1mvv03zkqp5f7q2nnvpj2gq1v67vp42qr7cm0a20cfvp2gsxq0h5"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo rlang]; }; graphkernels = derive2 { name="graphkernels"; version="1.6.1"; sha256="1fwl5a13mdmia374zas0vvd4dlfnp4in9gj42c0iq01icy1wq0la"; depends=[igraph Rcpp RcppEigen]; }; - graphlayouts = derive2 { name="graphlayouts"; version="0.8.3"; sha256="08a4cpy0n90hw8xzmxck13hp76yh40r0njb2m7mwdldljkbybr7r"; depends=[igraph Rcpp RcppArmadillo]; }; + graphlayouts = derive2 { name="graphlayouts"; version="0.8.4"; sha256="1zch8v0fc9lrm1pklcvi7g4g7zmqq3gxprm7pbdx018b35z8z3bp"; depends=[igraph Rcpp RcppArmadillo]; }; graphon = derive2 { name="graphon"; version="0.3.5"; sha256="1x61pdsb3s1vi1iiy9pjq0iz0m5j5b6q3rqhwvx9kvmg4r8yifpv"; depends=[Rdpack ROptSpace]; }; graphql = derive2 { name="graphql"; version="1.5.1"; sha256="10zpibqh1vsin60pl5dnk4z2kzrfc3aqrhijcn36zq7f97629wv8"; depends=[jsonlite Rcpp]; }; graphsim = derive2 { name="graphsim"; version="1.0.3"; sha256="16djk5zm2pnvfyb2783rdyi6a0gspm23br7xxgb2c8wfd9gf430n"; depends=[gplots igraph Matrix matrixcalc mvtnorm]; }; graphx = derive2 { name="graphx"; version="1.0"; sha256="1k7vq0j58yskmaqknpkhccrc5n1hh8p2fsw7419r7k6a2c3syj8a"; depends=[cubature docore jpeg magicaxis MASS plotrix png pracma raster sp]; }; - grates = derive2 { name="grates"; version="0.3.0"; sha256="0ycgh6fzrsjv3n0wzcaybk686lq074krayz5jfx690iqj5fjkjqi"; depends=[clock ellipsis rlang vctrs]; }; + grates = derive2 { name="grates"; version="0.3.1"; sha256="1a7f0ij415spfg20h5qqvmk46zh768l34jk61a45y1ywzs1cb3ki"; depends=[clock ellipsis rlang vctrs]; }; gratia = derive2 { name="gratia"; version="0.7.3"; sha256="1m1jc4qjcxkr6w75hirqwkn2sdrly7ydc3kcd33m4jhjzp7nysb2"; depends=[dplyr ggplot2 lifecycle mgcv mvnfast nlme patchwork purrr rlang stringr tibble tidyr tidyselect vctrs]; }; graticule = derive2 { name="graticule"; version="0.1.6"; sha256="0y8cyhlfm8amdb23cvxy508mpd4d64xgnk1xlr37ss2pqrxdhpir"; depends=[geosphere quadmesh raster sp]; }; gratis = derive2 { name="gratis"; version="1.0.0"; sha256="0dkgbha7ijwvddqxcnfn9gfz29kjzykifbr252qp3qjzkdqw50hi"; depends=[doRNG dplyr foreach forecast GA generics magrittr mvtnorm polynom purrr shiny tibble tsfeatures tsibble]; }; @@ -10251,7 +10309,7 @@ in with self; { gridGraphviz = derive2 { name="gridGraphviz"; version="0.3-1"; sha256="0yzy7w4bk3rn9yjqy06gzkcs0dla3n49z3v1z0mjikg8cd97d5ni"; depends=[graph Rgraphviz]; }; gridOT = derive2 { name="gridOT"; version="1.0.1"; sha256="106h1lk2fyfl68iwmbqbm9h8ip75ibanr1dsi6nrmd54pz475ry8"; depends=[Rcpp RcppArmadillo]; }; gridSVG = derive2 { name="gridSVG"; version="1.7-4"; sha256="1jspjn56yrkx98hhs98npzm0k0kwpv8x1hg40kphx5ikhvincxmr"; depends=[jsonlite XML]; }; - gridpattern = derive2 { name="gridpattern"; version="1.0.1"; sha256="0ia0n5k72a3a2c2hhgg0ykmbbq42yr1jf81xvmqq28jd4nzvzqn1"; depends=[glue memoise png rlang sf]; }; + gridpattern = derive2 { name="gridpattern"; version="1.0.2"; sha256="13yypjsbpr61yn15y4cyz6s8jvcgg3mmr8rncskinpk8lsa8h2h4"; depends=[glue memoise png rlang sf]; }; gridsampler = derive2 { name="gridsampler"; version="0.6"; sha256="0wqpqg9c372sv8zqks6v93gawiyfghw58hn7m8q45dxpqm16ss3k"; depends=[BiasedUrn ggplot2 plyr reshape2 shiny shinyBS shinythemes]; }; gridstackeR = derive2 { name="gridstackeR"; version="0.1.0"; sha256="01yazynwprzjygkh0dwrlvbjsmxvfy1pxr0nldnbngmq10wvpp2n"; depends=[checkmate htmltools shiny shinyjs]; }; gridtext = derive2 { name="gridtext"; version="0.1.5"; sha256="0f7i2qb8fawi8agy2iz2c173kfwj7cbb5ikjix64nmzqc5j7363d"; depends=[curl jpeg markdown png Rcpp rlang stringr xml2]; }; @@ -10267,7 +10325,7 @@ in with self; { groupRemMap = derive2 { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; }; groupTesting = derive2 { name="groupTesting"; version="1.0.0"; sha256="00jy1gw6whslmfcqic99hmbxh2z75rj14cjzrm5mnpcajn37s66j"; depends=[pracma]; }; groupWQS = derive2 { name="groupWQS"; version="0.0.3"; sha256="1c5yrsfgkhbg1fcjbrilfmf0phjry5z34536yfizc8wbc7mmmj0c"; depends=[glm2 MASS rjags Rsolnp]; }; - groupdata2 = derive2 { name="groupdata2"; version="2.0.1"; sha256="1gppn1d456chmcqn2zxssijvkl8ww23pbnxikd4jmsl1735wiw9h"; depends=[checkmate dplyr lifecycle numbers plyr purrr rearrr rlang tibble tidyr]; }; + groupdata2 = derive2 { name="groupdata2"; version="2.0.2"; sha256="1icqy5g0xww7f4aimawbbanqma6vbyln3xivhz0i8x3pdnkf1gl5"; depends=[checkmate dplyr lifecycle numbers plyr purrr rearrr rlang tibble tidyr]; }; groupedSurv = derive2 { name="groupedSurv"; version="1.0.4.3"; sha256="1j6n09cr3wk7l77pgnabqhxm6cfjvvxndd5bgybr4jljfv7rh92y"; depends=[BH doParallel foreach qvalue Rcpp RcppEigen]; }; groupr = derive2 { name="groupr"; version="0.1.0"; sha256="1gych92dpyxg2vfm3h6djw61d9z2n6q2kvbz1xpq1p0zcyiw16gy"; depends=[dplyr purrr rlang tibble tidyr vctrs]; }; groupsubsetselection = derive2 { name="groupsubsetselection"; version="1.0.3"; sha256="118cj5xc8nbq4fs2gbzg1nhynixaflbl0si77gyy4ybw0drsz4nj"; depends=[]; }; @@ -10275,8 +10333,8 @@ in with self; { grove = derive2 { name="grove"; version="1.1"; sha256="0fqsj5dx7py7cin3hvfkxglh8v3x0dwj6cxy4h5vbddjl687db5x"; depends=[Rcpp RcppArmadillo wavethresh]; }; growfunctions = derive2 { name="growfunctions"; version="0.15"; sha256="0rj0kypjvqj7wlswzq4kxqizhlw56zgaydf37cbfjm5090h43fzi"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 spam]; }; growth = derive2 { name="growth"; version="1.1.1"; sha256="05yxjlbv1i4ly8yp3aqbxzq1z2mp7sfx7xyqw48qsdv0acqai7jy"; depends=[rmutil]; }; - growthPheno = derive2 { name="growthPheno"; version="1.0-34"; sha256="073pbi3xyqr828gilrv3w42xv28flf8dld4j60xqqjr7g4dcllpk"; depends=[dae GGally ggplot2 Hmisc RColorBrewer readxl reshape stringi]; }; - growthcleanr = derive2 { name="growthcleanr"; version="2.0.2"; sha256="07icwy0zdba1l0gac0zmd97xsk3lilfa2r565pf74fi29mp85y9z"; depends=[data_table doParallel dplyr foreach labelled magrittr plyr R_utils tidyr]; }; + growthPheno = derive2 { name="growthPheno"; version="2.1.16"; sha256="095lwl8dj6xqwqar28q40iwq325kiylfidgmrx2rdfz2cgmvlybs"; depends=[dae GGally ggplot2 Hmisc JOPS RColorBrewer readxl reshape stringi]; }; + growthcleanr = derive2 { name="growthcleanr"; version="2.0.3"; sha256="1qdm91mpa36vpxz43fx2dv7qwg9wd6zasc7plalqyf60p3iw8r7d"; depends=[data_table doParallel dplyr foreach labelled magrittr plyr R_utils tidyr]; }; growthcurver = derive2 { name="growthcurver"; version="0.3.1"; sha256="1l3dqcl395nh406s7d5554r5ynk1a7v5ba5kmnv9r7lj7h9nfdjj"; depends=[minpack_lm]; }; growthmodels = derive2 { name="growthmodels"; version="1.2.0"; sha256="1wy5z77819s3daa0mifafcjfkggsq0ac522yagj86ml3vf7yqppj"; depends=[]; }; growthrate = derive2 { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[clime Matrix mvtnorm]; }; @@ -10315,25 +10373,27 @@ in with self; { gsubfn = derive2 { name="gsubfn"; version="0.7"; sha256="00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"; depends=[proto]; }; gsw = derive2 { name="gsw"; version="1.1-1"; sha256="10nxyi1kqq9ypincpr347iqixfz17nd69g7ikhyid1djqfy1v8nj"; depends=[]; }; gsynth = derive2 { name="gsynth"; version="1.2.1"; sha256="1a4s8ghxc5zw295ys8hp22nx93gc1vyakn7r1dcq3ghikh02nzaa"; depends=[abind doParallel doRNG foreach future GGally ggplot2 lfe MASS mvtnorm Rcpp RcppArmadillo]; }; - gt = derive2 { name="gt"; version="0.7.0"; sha256="00v9xmxyjfdcvswr8479a8is7rlkyhpkdnk7syp80h7qwfjv2mfq"; depends=[base64enc bitops cli commonmark dplyr fs ggplot2 glue htmltools magrittr rlang sass scales stringr tibble tidyselect]; }; + gt = derive2 { name="gt"; version="0.8.0"; sha256="1yg91nnx1d6d6mmjhbqbcy7ya69sd7sbhlj2fsw79k01849lxdsy"; depends=[base64enc bigD bitops cli commonmark dplyr fs ggplot2 glue htmltools juicyjuice magrittr rlang sass scales tibble tidyselect]; }; gt4ireval = derive2 { name="gt4ireval"; version="2.0"; sha256="1d567iz57xqszm45l1wq4n2qrrmyz8ssll1vllfmncb9ibbnx4f3"; depends=[]; }; - gtExtras = derive2 { name="gtExtras"; version="0.4.2"; sha256="0vy93jjibkgak2ml9a1a98rxrk0d15xqvavh7d1ysk3vc6b7h61f"; depends=[commonmark dplyr fontawesome ggplot2 glue gt htmltools paletteer rlang scales]; }; + gtExtras = derive2 { name="gtExtras"; version="0.4.5"; sha256="04vl7i9qllfn5977y47kc4355rpk9m63rii2c0v27i9lbvr3z4fr"; depends=[commonmark dplyr fontawesome ggplot2 glue gt htmltools paletteer rlang scales]; }; gtWAS = derive2 { name="gtWAS"; version="1.1.0"; sha256="1kbkz0iwc3gfj982m93m2wdr1xm5rhy70k6bdc7kms9ivh5fh6sh"; depends=[]; }; gtable = derive2 { name="gtable"; version="0.3.1"; sha256="1dbwxhxawwbmaixwxxglazv5bici56qvmjk7sqa8j66m49bjrmlb"; depends=[]; }; gte = derive2 { name="gte"; version="1.2-3"; sha256="0fnrpgfji5f1n8nra0d8xghqgsjil7r2j6xnbmfm7mjafcav4wwk"; depends=[survival]; }; + gtfs2emis = derive2 { name="gtfs2emis"; version="0.1.0"; sha256="1nh3m57xhh12sm18d5lvf0i9z4ayn6kgbmp036lw89wz10s42w6z"; depends=[checkmate data_table furrr future gtfs2gps sf sfheaders terra units]; }; gtfs2gps = derive2 { name="gtfs2gps"; version="2.1-0"; sha256="1z9nlc5lcn9vhqc1y25m5cqvgb8rnnrwnqsxrnmq7cr9shs6dkm5"; depends=[checkmate data_table furrr future gtfstools lwgeom progressr Rcpp sf sfheaders terra units]; }; gtfsio = derive2 { name="gtfsio"; version="1.0.0"; sha256="05210ii5b754ryk296knqm3sf9yi5xwvcrq6rb9w71njqgvykwcj"; depends=[data_table zip]; }; gtfsrouter = derive2 { name="gtfsrouter"; version="0.0.5"; sha256="0yxgc4pi0g2wqswvwba0ij263i8b8p6wgsy6hbvklq0gim616shi"; depends=[cli data_table geodist Rcpp]; }; - gtfstools = derive2 { name="gtfstools"; version="1.1.0"; sha256="1ms4xjbnaggakccwmd8bhi061rlbznx3bczaa35df19saw5z66cz"; depends=[checkmate cpp11 data_table gtfsio sf sfheaders units]; }; + gtfstools = derive2 { name="gtfstools"; version="1.2.0"; sha256="03gc784dvskvg8m0fcqc966ka0slnh10in5gk7bba8h7lnfb893w"; depends=[checkmate cpp11 curl data_table gtfsio processx sf sfheaders units zip]; }; gtheory = derive2 { name="gtheory"; version="0.1.2"; sha256="1xc1jl69z5csalqk3hx83s53awcl1fjq6p0x2pczhs7dsvwd6lks"; depends=[lme4]; }; - gtools = derive2 { name="gtools"; version="3.9.3"; sha256="0criwc0jmbrgaslh2kdjirgdzbf0ycry8yjryi95fb9qgckm7yvs"; depends=[]; }; + gtools = derive2 { name="gtools"; version="3.9.4"; sha256="04gihp78x2caahqvf0mlv1cqy1m121l6hkdvbp01r2z99wcqpksr"; depends=[]; }; gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; gtreg = derive2 { name="gtreg"; version="0.2.0"; sha256="0ivg1chwn4igy9df5c8dmq5r2ryjwasqvdi8q4xfysjxij97hd6s"; depends=[broom_helpers cli dplyr forcats glue gtsummary purrr rlang stringr tibble tidyr]; }; gtrendsR = derive2 { name="gtrendsR"; version="1.5.1"; sha256="05bfcc77bg2ndl83l0lv7rs4slxcflv9h2pfij8a3j1k9r9lwp2x"; depends=[anytime curl ggplot2 jsonlite]; }; - gtsummary = derive2 { name="gtsummary"; version="1.6.2"; sha256="0naa0jzv6cgnrglcis4h3i0y11sgh8fj0mm9wg8rzdg9hir861hq"; depends=[broom broom_helpers cli dplyr forcats glue gt knitr lifecycle purrr rlang stringr tibble tidyr]; }; + gtsummary = derive2 { name="gtsummary"; version="1.6.3"; sha256="0hwl4vzny8xzi8bzlmaj9i4rlxxs851m8jsx1p96j9j7ncdsmpsc"; depends=[broom broom_helpers cli dplyr forcats glue gt knitr lifecycle purrr rlang stringr tibble tidyr]; }; guaguas = derive2 { name="guaguas"; version="0.3.0"; sha256="0ngdwg297ndn763vx0qnvcsy5bhsr026hv8hvwgrz5w32mpw252d"; depends=[]; }; guardianapi = derive2 { name="guardianapi"; version="0.1.1"; sha256="17xmmr6pfzhdnmf45jzvk84gbfnmlw1qfv1gqjaw85vgm8b6jn6l"; depends=[dplyr httr jsonlite rlang tibble]; }; guess = derive2 { name="guess"; version="0.1"; sha256="198pxi0yipgm9wccpj3y4a0gkibhyxcmb7v5dz7ipzrk44ha5g6j"; depends=[Rsolnp]; }; + guiplot = derive2 { name="guiplot"; version="0.3.1"; sha256="0h8jjilkxcqgmyr7pcri8kilww44yrdvk9qfbvyr6gk7smvb9y0c"; depends=[DT excelR ggplot2 magrittr R6 rlang shiny svglite]; }; guix_install = derive2 { name="guix.install"; version="1.0.0"; sha256="0s3wb5781yc43c9zwrn7i87zcbrlx7xr0ms0v9hvgs7qsv02id9j"; depends=[RUnit]; }; gumbel = derive2 { name="gumbel"; version="1.10-2"; sha256="0s9idcrssnl683abwky9zvqylciy0b51z935yfvb2bm8b0b0b4ij"; depends=[]; }; gumboot = derive2 { name="gumboot"; version="1.0.0"; sha256="0c31rxkq08wzycwiwii7q166pzwfbdg35259rymwy0g38pnjnjp6"; depends=[dplyr ggplot2 hydroGOF lubridate ncdf4 reshape2 stringr]; }; @@ -10367,7 +10427,7 @@ in with self; { hSDM = derive2 { name="hSDM"; version="1.4.1"; sha256="1jwqjzr0zpckzh2jpqh17v6ypq4mzn5khlv6p37y59zz8bh9mvxp"; depends=[coda]; }; haarfisz = derive2 { name="haarfisz"; version="4.5.3"; sha256="1qrp4hwxrj7nf7lrxvhwgi9vky0wbyfd165b8idavj0b2n29s98n"; depends=[wavethresh]; }; habCluster = derive2 { name="habCluster"; version="1.0.5"; sha256="1cjmhq8krkv4g1vy70kc3j667djzmq38xlqn568f437f6jaglvkp"; depends=[igraph raster Rcpp sf stars]; }; - hablar = derive2 { name="hablar"; version="0.3.0"; sha256="12gm5n3p2kmjwhkf60n4bjn3lrj7lrs5sgmvads9sfp2ckhaiysk"; depends=[dplyr lubridate purrr]; }; + hablar = derive2 { name="hablar"; version="0.3.1"; sha256="02d5rssggf8n67psjn8sw106y4vzndyp7sq43hfm4zqnpsxp0hgq"; depends=[dplyr lubridate purrr]; }; hackeRnews = derive2 { name="hackeRnews"; version="0.1.0"; sha256="0vrdbk4dxbykb3hs35nxkl3s2ds92gs5qz66p85w8j5zjmwbw2x6"; depends=[future_apply httr jsonlite tibble]; }; hacksaw = derive2 { name="hacksaw"; version="0.0.2"; sha256="1ls4l53bsaxyd6lwka9z9sb6ypa2ymbxpfxhsj9k966031jv2vk3"; depends=[dplyr magrittr purrr rlang tibble tidyselect zeallot]; }; hacksig = derive2 { name="hacksig"; version="0.1.2"; sha256="0sc35vyi00r2b3hgn1xw2zffd704adschjwhx0niv5a1l33dxbkp"; depends=[dplyr future_apply rlang tibble tidyr]; }; @@ -10385,17 +10445,17 @@ in with self; { hansard = derive2 { name="hansard"; version="0.8.0"; sha256="00mcy58nhlphb0v0wchbaw1qamm0435s09nxxw6rr5z872rhyf5a"; depends=[dplyr jsonlite lubridate snakecase tibble tidyr]; }; hapassoc = derive2 { name="hapassoc"; version="1.2-9"; sha256="09ijc4sbw743z74fzklmvig11ndkycg6j86k4214wfsj1yj6j9x6"; depends=[]; }; haplo_ccs = derive2 { name="haplo.ccs"; version="1.3.2"; sha256="103i1fxk990drlsdhjrh9p6rp05g7gqzmlqfcdx9a1di1qrhw5qh"; depends=[haplo_stats survival]; }; - haplo_stats = derive2 { name="haplo.stats"; version="1.8.9"; sha256="0np9kw4f30xbvwr4f79g909ilis5n273ridmlwyzjxiskiry6mx0"; depends=[arsenal rms]; }; + haplo_stats = derive2 { name="haplo.stats"; version="1.9.2"; sha256="1397rxcqqz29yaf3f2gphg1jhmfw3wvvjvqk7cz01jdh3pihdh56"; depends=[arsenal rms]; }; haploR = derive2 { name="haploR"; version="4.0.6"; sha256="1cg92v64xdzmr5hbjhd11rz6rkdddsxcxkqdgbj5hd1ldqsrjj45"; depends=[DT httr plyr RCurl RJSONIO RUnit tibble XML]; }; haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; }; haplotypes = derive2 { name="haplotypes"; version="1.1.2"; sha256="07grdwli0kxnnnf7mg8z7gjpny88h71vf867g50f08yybgb46y70"; depends=[ape network phangorn plotrix sna]; }; - happign = derive2 { name="happign"; version="0.1.6"; sha256="0vbyw8017jbad1f1zd6ccaf68p1863r7qrli8nj47si7ivs0qv3s"; depends=[archive checkmate curl dplyr httr2 magrittr sf terra xml2]; }; + happign = derive2 { name="happign"; version="0.1.7"; sha256="1zxm9hg9jq0xzw6has9blskvy0cz6c8b3qqysaca1569zmyfgw8n"; depends=[archive checkmate dplyr geojsonsf httr2 magrittr sf terra xml2]; }; happytime = derive2 { name="happytime"; version="0.1.0"; sha256="03iblwb6w2dh9sibfi4nlswidck13hzsn7123838zp4sxfnrp041"; depends=[]; }; hapsim = derive2 { name="hapsim"; version="0.31"; sha256="0jw6iw89d4y8wjy58biv40szp123ql7frz1mmdjdxljmwaby963h"; depends=[MASS]; }; hardhat = derive2 { name="hardhat"; version="1.2.0"; sha256="0y5dxpd4gsrs365x1v4qf2vq7hq2qb6f6x50dyj29xmmn760wcpr"; depends=[glue rlang tibble vctrs]; }; harmonicmeanp = derive2 { name="harmonicmeanp"; version="3.0"; sha256="17irfw8788yhh36698p9w8wab6wcin1yzfinlbs3gdg70d42zcnd"; depends=[FMStable]; }; - harmonizer = derive2 { name="harmonizer"; version="0.3.0"; sha256="116vby0n3vj2gc46s629ppq3kxsjvgdfmc6fdjz0rxyjcgjdqwxz"; depends=[]; }; - harmony = derive2 { name="harmony"; version="0.1.0"; sha256="0jkj9y4j6ja2d6y5j0akmkkgpppprk65i6bwwhs163g918i8qng0"; depends=[cowplot dplyr ggplot2 irlba Matrix Rcpp RcppArmadillo RcppProgress rlang tibble tidyr]; }; + harmonizer = derive2 { name="harmonizer"; version="0.3.1"; sha256="1zckf30bpjxnpb5ymz1razdbzjpvq8gf3a3si5grm0c5m4gmypj7"; depends=[]; }; + harmony = derive2 { name="harmony"; version="0.1.1"; sha256="0pcvfy2gpkgwws09cnd6qkr62w53rdhiiz98jr9w19m15gc8skvm"; depends=[cowplot dplyr ggplot2 irlba Matrix Rcpp RcppArmadillo RcppProgress rlang tibble tidyr]; }; harrietr = derive2 { name="harrietr"; version="0.2.3"; sha256="0n6vsqysj4ijh06z6nqmj8x1z4w9711dxhbfp8p8fwi0l75pj0cj"; depends=[ape dplyr ggtree lazyeval magrittr rlang tidyr]; }; harrypotter = derive2 { name="harrypotter"; version="2.1.1"; sha256="1j3sv0rpp4lcrf09j4a3an4lkwi2x1z18iv62fk6c2kpp9b14b8r"; depends=[ggplot2 gridExtra]; }; hash = derive2 { name="hash"; version="2.2.6.2"; sha256="17scs675a86c34hjbxmwi8kny4yyv97x3515s449zafj2i0ad8vm"; depends=[]; }; @@ -10412,8 +10472,9 @@ in with self; { hbsae = derive2 { name="hbsae"; version="1.2"; sha256="0fg782gxivkkwhqvxf09j1q20f2dqm7bd1y9bp99fy7mg88zp0gn"; depends=[Matrix]; }; hcandersenr = derive2 { name="hcandersenr"; version="0.2.0"; sha256="0r8z8kb9hwvgcsxbd7arbmqclhwlbcjpnf3p9mp5vgyxm84iz515"; depends=[]; }; hcci = derive2 { name="hcci"; version="1.0.0"; sha256="11piy1ajg3j3dbh66szzf7lhc3x28fz75ai39vlx0gl5nc2v5zs5"; depends=[]; }; - hce = derive2 { name="hce"; version="0.0.2"; sha256="1h8ixf93x97gcfzlf2mk796lqq92vmk2g74s8811087rlkcdk8ik"; depends=[]; }; + hce = derive2 { name="hce"; version="0.0.8"; sha256="10wxr6v4mwr6map3rl3ds3bfpqw2jq3vlqyhic1jiwjx7dl41913"; depends=[]; }; hchinamap = derive2 { name="hchinamap"; version="0.1.0"; sha256="1pia593g50zf3286f9g51slkvrpj1iy7lws9d7a3nqgb2v3yji1y"; depends=[htmlwidgets]; }; + hcidata = derive2 { name="hcidata"; version="0.1.0"; sha256="16qzll0rhfc6szi9y5hxycq5462jm78kla70fnv1sqw7n34pvpg5"; depends=[Rdpack]; }; hctrial = derive2 { name="hctrial"; version="0.1.0"; sha256="19li8i8hx0r3b63q80cnj6pr72rdbmykxq0kcfbn4azq3sdd046y"; depends=[clinfun GenBinomApps]; }; hdImpute = derive2 { name="hdImpute"; version="0.1.1"; sha256="16p5mkapgsnb8mr74388hzrvbmn2njql3v3lk9902mdp565pk9ya"; depends=[cli dplyr magrittr missRanger plyr purrr tibble tidyselect]; }; hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; }; @@ -10434,12 +10495,11 @@ in with self; { hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; hdtg = derive2 { name="hdtg"; version="0.2.0"; sha256="11shszhgpm8aka2awxyrnxpq8f8sdgw9b97mvdz5yb9xbm9kl57z"; depends=[mgcv Rcpp RcppEigen RcppParallel RcppXsimd Rdpack]; }; headliner = derive2 { name="headliner"; version="0.0.2"; sha256="0ylvibi8nlsz5is5rv4m25a7jajidy59k2d19dqw059qh49jd64f"; depends=[dplyr glue lubridate purrr rlang tibble tidyr]; }; - healthcareai = derive2 { name="healthcareai"; version="2.5.1"; sha256="0ah855wvb2v8b8zz5a64q8psjrkpgq9xzyrla3mdpm5xx2gh0z0p"; depends=[caret cowplot data_table dplyr e1071 generics ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang ROCR stringr tibble tidyr xgboost]; }; healthfinance = derive2 { name="healthfinance"; version="0.1.0"; sha256="163zhdd5mqp0q872dmr3xzw2ppapnwp46rr7vkkfnglz635nxvpz"; depends=[ggplot2 lubridate readr scales shiny tibble]; }; healthyR = derive2 { name="healthyR"; version="0.2.0"; sha256="0fyaamw06kv2gsz2r9fiys2wf48h0k2x1z133682p3hs37g36kr0"; depends=[cowplot dplyr ggplot2 ggrepel lubridate magrittr plotly purrr rlang scales sqldf stringr tibble tidyr timetk writexl]; }; - healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.9"; sha256="053bvzw41qlqrii133cnjfx430vjd46b0gzpfa4359vzpwl71win"; depends=[broom dials dplyr forcats ggplot2 ggrepel h2o magrittr modeltime parsnip purrr recipes rlang tibble tidyr tune workflows yardstick]; }; + healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.10"; sha256="0yzi2gnzhsp1rxcq5c38d4ih14ix5mbcmz7yyrxmcq61zqpgfhgx"; depends=[broom dials dplyr forcats ggplot2 ggrepel h2o magrittr modeltime parsnip purrr recipes rlang tibble tidyr tune workflows yardstick]; }; healthyR_data = derive2 { name="healthyR.data"; version="1.0.1"; sha256="18b7aqdy9a0ldf2ib2d0a07k6bfmgdp61y8hl8yl19v35nqj6dvh"; depends=[]; }; - healthyR_ts = derive2 { name="healthyR.ts"; version="0.2.3"; sha256="0kiq0jkp99pi8l367v6iy255g44yw3cm6b8laayzvanfaq7zdn89"; depends=[cowplot dplyr forcats ggplot2 hardhat lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyr timetk workflowsets]; }; + healthyR_ts = derive2 { name="healthyR.ts"; version="0.2.5"; sha256="1v35l9q6a3naszs9mi3ahjkv8yknli5h6h22dzbshr9r9f6d7gjh"; depends=[cowplot dplyr forcats ggplot2 hardhat lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyr timetk workflowsets]; }; healthyverse = derive2 { name="healthyverse"; version="1.0.2"; sha256="1ngxadwpd62lx6y41szqckv1f2j8ja1hy4qx08vccpjbmlcg8v1b"; depends=[cli crayon dplyr healthyR healthyR_ai healthyR_data healthyR_ts magrittr purrr rlang rstudioapi tibble TidyDensity]; }; heapsofpapers = derive2 { name="heapsofpapers"; version="0.1.0"; sha256="1b88ff4j6rh0qif43iyb12wipkkjmp5qx33qfzgffr5m54df4kfy"; depends=[aws_s3 curl dplyr fs magrittr rlang scales]; }; heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; @@ -10456,16 +10516,17 @@ in with self; { helixvis = derive2 { name="helixvis"; version="1.0.1"; sha256="113rnpnrcnw18ks78fgq79zdrw3kmpzpimlc45gvj0za2fbyci3p"; depends=[ggforce ggplot2 rlang]; }; hellno = derive2 { name="hellno"; version="0.0.1"; sha256="1j787rw9hh75bvkckmlz5xkgwc22gd7si3mgjd7v60dd6lykfa88"; depends=[]; }; helloJavaWorld = derive2 { name="helloJavaWorld"; version="0.0-9"; sha256="1a8yxja54iqdy2k8bicrcx1y3rkgslas03is4v78yhbz42c9fi8s"; depends=[rJava]; }; - helminthR = derive2 { name="helminthR"; version="1.0.9"; sha256="1s5vxpii1zryflafqxn0fwx3xnkbi2115f36fd7jq9l9y7grpqz9"; depends=[httr magrittr plyr rvest taxize xml2]; }; - helsinki = derive2 { name="helsinki"; version="1.0.5"; sha256="1vf023n93cq67dk139rszj3y8bc91z7rlagrv2z0y8mqpndi03am"; depends=[curl dplyr httpcache httr jsonlite purrr sf xml2]; }; + hellorust = derive2 { name="hellorust"; version="1.0.1"; sha256="10vkj15jz0qdgxcj2dksizkw2x15bhwnh4q0sp0g8854x88b7f7x"; depends=[]; }; + helminthR = derive2 { name="helminthR"; version="1.0.10"; sha256="0ssw0smxc5zx3d189fq8c6kdg6d7db1sd5iblhz54pg41j9fvqhq"; depends=[httr magrittr plyr rvest taxize xml2]; }; + helsinki = derive2 { name="helsinki"; version="1.0.6"; sha256="1hsmxnfzbi8xvqz97rmq225w9prhxc558slmfxg03y5wpjqdpq4a"; depends=[curl dplyr httr jsonlite purrr sf xml2]; }; heplots = derive2 { name="heplots"; version="1.4-2"; sha256="1knk7w23x3ycxr79vfp9399xfcrrj46bkzxbav3m9z9r36bx6j2x"; depends=[broom car magrittr MASS purrr tibble]; }; here = derive2 { name="here"; version="1.0.1"; sha256="0srlr8h8qmr0wrmp7gs4g2ry5dni2hx8n947bik3s3a26f091v88"; depends=[rprojroot]; }; hereR = derive2 { name="hereR"; version="0.9.0"; sha256="1p5qvhqmh64dc9kxzv0cxf8v65q3d30yn6znd69bnaf3qn020lxw"; depends=[crul curl data_table flexpolyline jsonlite sf stringr]; }; - hergm = derive2 { name="hergm"; version="4.1-9"; sha256="0jqgkvg4kypialb0lrp4p8idxq9c3yalq5k1bv7602mlikyzy5w8"; depends=[ergm igraph intergraph latentnet Matrix mlergm network Rcpp sna stringr]; }; + hergm = derive2 { name="hergm"; version="4.1-10"; sha256="04vr5mmsr39rpjnans8xwp1z304rd3hi5za7qhjv7dn5s8c8pw9h"; depends=[ergm igraph intergraph latentnet Matrix mlergm network Rcpp sna stringr]; }; heritEWAS = derive2 { name="heritEWAS"; version="0.2.0"; sha256="0yss9vf2m9szq8xi5i2nhf85mfvzvhv6c1f4kvvb2z9lmaicjni5"; depends=[]; }; heritability = derive2 { name="heritability"; version="1.3"; sha256="0a0pw8hppkgypl4jaa38hks9nxfwz2zbsd4w6w40j1hxlyy4km8m"; depends=[MASS]; }; hermite = derive2 { name="hermite"; version="1.1.2"; sha256="0j9s7ayvbvmgwybrvf703b72qbn8gskb105pis19ig2sslllzda3"; depends=[maxLik]; }; - hermiter = derive2 { name="hermiter"; version="2.1.0"; sha256="1z9zrmyxx7dgsi0zblp15saw1iz79sc2r9zyirdzqmz010rnm19y"; depends=[BH Rcpp]; }; + hermiter = derive2 { name="hermiter"; version="2.2.0"; sha256="0cfww9klf6iziac6p8psjbjixq1p85bsb2fl8nldhjz9psi9fk5x"; depends=[BH Rcpp RcppParallel]; }; hero = derive2 { name="hero"; version="0.4.7"; sha256="129v2pjbxm5aalr5lfx0kh20rhwksnb80pc459pxg0xkwxvy1l3d"; depends=[fields Matrix optimx pbapply rgeos sp]; }; hesim = derive2 { name="hesim"; version="0.5.3"; sha256="115c6f0i0j7i4k2rf5m6f4a9v8mz99mfvv560v0v12g9gjj9lncb"; depends=[data_table flexsurv ggplot2 MASS msm R6 Rcpp RcppArmadillo survival]; }; hetGP = derive2 { name="hetGP"; version="1.1.4"; sha256="1nm4kkg0jwlp21flviiw187jih4y1s6lqn3j0f2s1h81rh1vvvzf"; depends=[DiceDesign MASS Rcpp]; }; @@ -10493,8 +10554,7 @@ in with self; { hhh4contacts = derive2 { name="hhh4contacts"; version="0.13.1"; sha256="1cqwn09iqgh6131cm4b5j0kx7k5vil0ak42v064g4maayj0yqy7p"; depends=[surveillance]; }; hhi = derive2 { name="hhi"; version="1.2.0"; sha256="1yl52c3nqdi8v60sr01l0vv8359803dm2i4c9ifazgj3h3a4h0yp"; depends=[ggplot2]; }; hhsmm = derive2 { name="hhsmm"; version="0.3.3"; sha256="1bi0jbzc8gk8l9x748281hlid9r8zrfzwjdjx3vhbsjcqf55299x"; depends=[CMAPSS cpr magic MASS mice mvtnorm progress psych Rcpp Rdpack splines2]; }; - hht = derive2 { name="hht"; version="2.1.4"; sha256="0i4rjr507k555pvf7q6y6b3df56rjc6igrv8dk0mhyfws49jw9m9"; depends=[EMD fields spatstat spatstat_core spatstat_geom spatstat_linnet]; }; - hibayes = derive2 { name="hibayes"; version="1.1.0"; sha256="0zypyrp0wlawbslavc8gj3vydr6jcrgg92ygfp4xi7s64l1gcqw3"; depends=[BH bigmemory Matrix Rcpp RcppArmadillo RcppProgress]; }; + hibayes = derive2 { name="hibayes"; version="2.0.0"; sha256="15kk6jpm9brrl6257dh57z57dd3zndqxz0qwj1nxfc06zrs3bppi"; depends=[BH bigmemory Matrix Rcpp RcppArmadillo RcppProgress stringr]; }; hiddenf = derive2 { name="hiddenf"; version="2.0"; sha256="0shc1kfiq527mkc5i97zcm51hsvknnhjg7dyfvbfqyk145v6sz00"; depends=[]; }; hier_part = derive2 { name="hier.part"; version="1.0-6"; sha256="15wlpb2rsn6am8galsbjiy4psp78nlv1x2hz3cnqbwj508w6gsj0"; depends=[betareg gtools MASS]; }; hierBipartite = derive2 { name="hierBipartite"; version="0.0.2"; sha256="1f6agxrv363wksi33b29v42hys90351ninb4li9m52n0kzv25m1f"; depends=[irlba magrittr]; }; @@ -10514,8 +10574,8 @@ in with self; { highlightHTML = derive2 { name="highlightHTML"; version="0.2.5"; sha256="0j3zrvil7k5wfsbgfj2b4nbx77qsj3b4makv5angcf8s59p7q80r"; depends=[]; }; highmean = derive2 { name="highmean"; version="3.0"; sha256="1lq7z0l1737j4wvsy7951405afylyywp7vf2i7girzh459fdfzpc"; depends=[MASS mnormt mvtnorm]; }; highr = derive2 { name="highr"; version="0.9"; sha256="0kgdv2vf1lz3b5kbal9s83gg6812nw7fvrq0rkyr0v4k1lwi3zxy"; depends=[xfun]; }; - highriskzone = derive2 { name="highriskzone"; version="1.4.7"; sha256="1ylbmk6a2d6prwips2da6syzxpbfhda93abdw98pjj658p7l3m0r"; depends=[deldir fields ks maps Matrix mvtnorm rgeos spatstat spatstat_core spatstat_geom spatstat_random]; }; - highs = derive2 { name="highs"; version="0.1-4"; sha256="0yyfyk8dw1q7firqnq83ymwknbnaw3r9rzxdmw3f9pbvkcpgi4n3"; depends=[checkmate Rcpp]; }; + highriskzone = derive2 { name="highriskzone"; version="1.4.8"; sha256="167xj46v3m85pbwxw8cm0jcb1b8srqggsnk6wbjv2b0vgxm65rzg"; depends=[deldir fields ks maps Matrix mvtnorm rgeos spatstat spatstat_explore spatstat_geom spatstat_random]; }; + highs = derive2 { name="highs"; version="0.1-5"; sha256="1b59ip3y2kqcp4q035857ds1y75sll1n78x51zhfpqfwkdx5258j"; depends=[checkmate Rcpp]; }; higlasso = derive2 { name="higlasso"; version="0.9.0"; sha256="09d500jsxlrv658i90xnb2wj1ad89v1iwb6y7vascyvg3cff104h"; depends=[gcdnet gglasso purrr Rcpp RcppArmadillo]; }; higrad = derive2 { name="higrad"; version="0.1.0"; sha256="0q9av8qyvmvgy6a3l7svcmbkjjgnp4iny1cld4g3qsbaz3yp3jaj"; depends=[Matrix]; }; hilbert = derive2 { name="hilbert"; version="0.2.1"; sha256="1vw1rn5adnqi99v5w47jmqx35rqv0slas3ldw7g34il1krz9xhms"; depends=[cpp11]; }; @@ -10524,7 +10584,7 @@ in with self; { hillR = derive2 { name="hillR"; version="0.5.1"; sha256="0yz2f3zz28k36f6afya5cg7k6kvyz6nzafr53pw6liy086nfrb9n"; depends=[ade4 ape FD geiger plyr tibble]; }; hilldiv = derive2 { name="hilldiv"; version="1.5.1"; sha256="1jp4xvrpqd575y2x0i73s0bq708bzi6gdhqgz85bia6d5kf05lq9"; depends=[ape data_table FSA geiger ggplot2 ggpubr qgraph RColorBrewer scales vegan]; }; hillshader = derive2 { name="hillshader"; version="0.1.0"; sha256="12phdpkjc4gyk9ri33x86dzxb03llhpqf43vin9ssfr23sbblnqh"; depends=[raster rayshader scales]; }; - himach = derive2 { name="himach"; version="0.3.0"; sha256="1v9pykliqrwab6vmjlbqbyq4i7xx7xy1l1fbmim45a924fx8ghqs"; depends=[cppRouting data_table dplyr geosphere ggplot2 lwgeom purrr s2 sf tidyr]; }; + himach = derive2 { name="himach"; version="0.3.1"; sha256="11p6g1w77yx8cxrvhy53dllyjk4z3jiq9mhz3bjr2kbzi954mysf"; depends=[cppRouting data_table dplyr geosphere ggplot2 lwgeom purrr s2 sf tidyr]; }; hindex = derive2 { name="hindex"; version="0.2.0"; sha256="01mcd2br33qqkfcyxl584f3l6kyb2cgzpd207p0mynzdaallgxgc"; depends=[foreach ggplot2 purrr]; }; hindexcalculator = derive2 { name="hindexcalculator"; version="1.0.0"; sha256="06b4dn629avmnyqxb0l39m00wz9cg9dddmm6qhgwgnzlxh14ifgk"; depends=[]; }; hint = derive2 { name="hint"; version="0.1-3"; sha256="00ppz8009cp0wbkmrxdg8x9jjqqb803bl6ki13hsqz07aya0j4iy"; depends=[]; }; @@ -10537,13 +10597,13 @@ in with self; { historicalborrow = derive2 { name="historicalborrow"; version="1.0.4"; sha256="0g7fs6qn957s3zw4ibbqszn2zpncpf6m41r68dw8g6x942mr0fhv"; depends=[dplyr ggplot2 Matrix posterior rjags rlang tibble tidyr tidyselect]; }; historicalborrowlong = derive2 { name="historicalborrowlong"; version="0.0.5"; sha256="0vw6sahdzcg32mnfja98ji8a4jg1hh3q0455x2shhkjv9rwyqsj4"; depends=[BH clustermq dplyr ggplot2 MASS Matrix posterior Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr tidyselect trialr withr zoo]; }; historydata = derive2 { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; }; + histoslider = derive2 { name="histoslider"; version="0.1"; sha256="1458bh7by00izx4q9idl479f08i3gk2g59mmzfvh945vbf399km0"; depends=[htmltools reactR rlang shiny]; }; histry = derive2 { name="histry"; version="0.2.4"; sha256="01rdpzkfq7nyiq1gh0cm89dn3466cmhgfj9x19lhl2yvh8xsdz8x"; depends=[CodeDepends evaluate fastdigest roprov]; }; hit = derive2 { name="hit"; version="0.4.0"; sha256="1vyla7jlg61rlrmqjb1wya404xj90xys175h12qy30paxsl5icqz"; depends=[glmnet Rcpp speedglm]; }; hitandrun = derive2 { name="hitandrun"; version="0.5-6"; sha256="0r0iymcmhiv3q1n7mrn3zsz2libfq3cdsq517k7kdk9m35piqrcg"; depends=[rcdd]; }; hive = derive2 { name="hive"; version="0.2-2"; sha256="0ihghpfsk73lndrfrk5907kdsih9s0a7xq23zcyfaa05nk98510n"; depends=[rJava XML]; }; hkclustering = derive2 { name="hkclustering"; version="1.0.1"; sha256="19syq06y5dl0mcwyaxr7w1hj8ffp5s140j72djcz0lljhskzmp6f"; depends=[cluster]; }; hkdatasets = derive2 { name="hkdatasets"; version="1.0.0"; sha256="1a594fgwc5bvimwp5m2zpb6pjy4iavcylxdmsq3hrnh9ll5g5582"; depends=[fst]; }; - hkevp = derive2 { name="hkevp"; version="1.1.4"; sha256="01m5yywi4vjnwhdayaqaqcp5lz70mllj5ifnwdb4c60wm9aby9pm"; depends=[Rcpp RcppArmadillo]; }; hkex_api = derive2 { name="hkex.api"; version="0.1"; sha256="0hqwihlrppchpaz2yaq92gf779yi5k8n7sxy1kbpjxs2qc18xvj2"; depends=[httr RCurl XML]; }; hlaR = derive2 { name="hlaR"; version="0.1.5"; sha256="1xfvishb5snrgf0sz3s46wq4v8w2mnyaasncflqvvdkj05xqyl9k"; depends=[devtools dplyr janitor purrr readr reshape2 schoolmath stringr tibble tidyr tidyverse]; }; hlidacr = derive2 { name="hlidacr"; version="0.2.0"; sha256="02l86bvb4w8wdq9mk9zh5wkf5i5y5jlgld0ciz851p5ra70c395p"; depends=[curl glue httr jsonlite purrr stringr urltools usethis]; }; @@ -10551,8 +10611,7 @@ in with self; { hmcdm = derive2 { name="hmcdm"; version="2.0.0"; sha256="06nc9w1fghxbxfjckqqq7z6c8kc3ksxasdkya987kx1qfgyph9r8"; depends=[bayesplot progress Rcpp RcppArmadillo rstantools]; }; hmclearn = derive2 { name="hmclearn"; version="0.0.5"; sha256="0zalvgnibd1kygryqcah5d008y6a0nxpy61yyiqsriw89r01jyjk"; depends=[bayesplot MASS mvtnorm]; }; hmeasure = derive2 { name="hmeasure"; version="1.0-2"; sha256="0l4nlny532kddiaa1nmgd37971whhwzb54mb1pvbwax7fsg6hmhw"; depends=[]; }; - hmer = derive2 { name="hmer"; version="1.0.1"; sha256="0rywb6xhgmyhg0lpjdz7n3n28bbx2b9npic7kjp2ksq18m9bwq7x"; depends=[GGally ggplot2 isoband lhs MASS mclust mvtnorm purrr R6 rlang stringr tidyr viridis]; }; - hmlasso = derive2 { name="hmlasso"; version="0.0.1"; sha256="0ydcyz9pw30ji8ghrvkgcbmp27d661vajl97b8cwis52605a3gfx"; depends=[BH MASS Matrix Rcpp RSpectra]; }; + hmer = derive2 { name="hmer"; version="1.2.0"; sha256="0piz1imjfhn3lqnl4j8rph79vrix3z1cjqcmxrq1fky1gcjsgwl1"; depends=[GGally ggplot2 isoband lhs MASS mclust mvtnorm pdist purrr R6 rlang stringr tidyr viridis]; }; hmm_discnp = derive2 { name="hmm.discnp"; version="3.0-9"; sha256="1cwsgjf258hwyf12sn54iqiliikmadbknlvhclhmqrr2vvj7561f"; depends=[nnet]; }; hmmm = derive2 { name="hmmm"; version="1.0-4"; sha256="1sbr85lcmcw3lv0ygqwfbarr91dp3br1xnlygy49145cvl93nfci"; depends=[MASS mvtnorm nleqslv quadprog]; }; hmmr = derive2 { name="hmmr"; version="1.0-0"; sha256="1m0jmw0i66hm5z5rycvpdmasq8zhgsz91km491n0n923mm480hmh"; depends=[depmixS4]; }; @@ -10589,7 +10648,7 @@ in with self; { howler = derive2 { name="howler"; version="0.2.1"; sha256="00l1952hf2ngypg67y88rgn0xiicsjsyl6xf8r9r65ar9k0fl3yb"; depends=[htmlwidgets shiny]; }; howmany = derive2 { name="howmany"; version="0.3-1"; sha256="045ck8qahfg2swbgyf7dpl32ryq1m4sbalhr7m5qdgpm62vz8h7f"; depends=[]; }; howzatR = derive2 { name="howzatR"; version="1.0.1"; sha256="00mv9qkn4ndp74jwqkjwqmy7j8ywhpl4ycg81yw3xlabbnqb292j"; depends=[magrittr rlang]; }; - hpa = derive2 { name="hpa"; version="1.2.1"; sha256="0z60j7ydbifwsp2flksgswnw3zrr0gamkng4nrbbsz7zxmagsxml"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + hpa = derive2 { name="hpa"; version="1.3.0"; sha256="0vhpvvzwxbqv4qm9489rxs50pz0jcpd5dqpg5wi96i9npcymmqcb"; depends=[Rcpp RcppArmadillo RcppParallel]; }; hpackedbubble = derive2 { name="hpackedbubble"; version="0.1.0"; sha256="1br7q4958f1zgvisglsaf41nz2ahnqi3bzazvlfnmk3nq03cb1ri"; depends=[htmlwidgets]; }; hpcwld = derive2 { name="hpcwld"; version="0.6-5"; sha256="1w7jpfnaqm9qhr52ixyihzwqklhf2pccshhpvf57pra3vc6cwv2l"; depends=[]; }; hpiR = derive2 { name="hpiR"; version="0.3.2"; sha256="0gz9ngnjgys7hzijsma2iyywwiv7vjar5gls28ds11wq8pmsv96n"; depends=[dplyr forecast ggplot2 gridExtra imputeTS lubridate magrittr MASS pdp plyr purrr ranger rlang robustbase zoo]; }; @@ -10605,7 +10664,8 @@ in with self; { hse = derive2 { name="hse"; version="0.0-28"; sha256="14w09wm1kk7b4q8cl5cwjfqvzm2fb4ls8qjw6i0l54184fmw4dah"; depends=[]; }; hsem = derive2 { name="hsem"; version="1.0"; sha256="0dgp65isbfmw0q4sn36l5226sf6vrl7mvn7gn50xvgybh0l6y7vk"; depends=[boot Matrix mvtnorm numDeriv]; }; hsphase = derive2 { name="hsphase"; version="2.0.2"; sha256="1b62k9sc6604djy37anslvqjpbrj9wsc9mvnfbrnmhqf4g0nnpdq"; depends=[Rcpp RcppArmadillo snowfall]; }; - hsrecombi = derive2 { name="hsrecombi"; version="0.4.2"; sha256="1d2dah63gl8gfzjz9rq9d3d62fqc3q6p0yc81rbx543220q3ll7v"; depends=[curl data_table dplyr hsphase quadprog Rcpp rlist]; }; + hspm = derive2 { name="hspm"; version="1.0-0"; sha256="1fp2mf9rs7l3dhhc7njf2fbkq9pyszm3r3409jzrhmfjzfk61qwl"; depends=[Formula Matrix spdep sphet]; }; + hsrecombi = derive2 { name="hsrecombi"; version="0.5.1"; sha256="0ghkn5nbf5r4dy3z3kk1pnhmd6ds0xnhvkpx1dz6jgi55hswg3x3"; depends=[curl data_table dplyr hsphase Matrix quadprog Rcpp rlist]; }; hsstan = derive2 { name="hsstan"; version="0.8.1"; sha256="0k7sqwx73zid68ji9l2hfihqdlk3rdpid81pp8g3fmi8dpvrzkms"; depends=[BH ggplot2 loo pROC Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; htdp = derive2 { name="htdp"; version="0.1.4"; sha256="0w579qp0p544xryb5r08m1nhqf7rmgv9q0lyx6my4av62l70ka5w"; depends=[Rcpp]; }; htestClust = derive2 { name="htestClust"; version="0.2.2"; sha256="081kxhc7sn070ys94pfzjf3gi2kkqwrqx2sclbgz4ihahqkbnhhr"; depends=[bootstrap MASS]; }; @@ -10615,12 +10675,11 @@ in with self; { html5 = derive2 { name="html5"; version="1.0.2"; sha256="1icji4y2x7bn4nrsf99n8b6g5v053bb9hpwvmp8bf5wh63d1ns8l"; depends=[]; }; htmlTable = derive2 { name="htmlTable"; version="2.4.1"; sha256="14qg65nw0bpikqs1hb1x7apzdzrnnl3ykjnks67kkp46v1skwzrs"; depends=[checkmate htmltools htmlwidgets knitr magrittr rstudioapi stringr]; }; htmldf = derive2 { name="htmldf"; version="0.6.0"; sha256="19brwxqnsxzvgsqq3gsjkcyag9ag3xa3mrl5c4s7x48xx2knfh9q"; depends=[cld3 dplyr httr lubridate magrittr processx progress R_utils ranger rvest stringr tibble tidyr urltools xml2]; }; - htmltab = derive2 { name="htmltab"; version="0.8.2"; sha256="09hnf339f3hzll7a0shq615h9d6f6xqrcv0c9iid6575m5qsallf"; depends=[httr XML]; }; - htmltools = derive2 { name="htmltools"; version="0.5.3"; sha256="0krjyz99q7zvdfg60b128c0zwr36h54gb05jw9c874d8kqv1ni9c"; depends=[base64enc digest fastmap rlang]; }; + htmltools = derive2 { name="htmltools"; version="0.5.4"; sha256="0zij9zrgsi82q5c65sf4pbidnzrkfr763g0n4ypdhf8dd6l2i0h0"; depends=[base64enc digest ellipsis fastmap rlang]; }; htmlwidgets = derive2 { name="htmlwidgets"; version="1.5.4"; sha256="1hgz8sx8xrvfcdwa4q15k942w4qsqg8lyxbbf7qyfzbi807wcgqs"; depends=[htmltools jsonlite yaml]; }; htree = derive2 { name="htree"; version="2.0.0"; sha256="15bi5c2p4aghihp3k12s78447j2x9hbsaq56b5lc8jmd1vf0jdwb"; depends=[]; }; hts = derive2 { name="hts"; version="6.0.2"; sha256="06mmxdm7a2fb1r4mb2x12b00rnkaxlrmlkv5yizr3yixmn4is9wb"; depends=[forecast Matrix Rcpp RcppEigen SparseM]; }; - htsr = derive2 { name="htsr"; version="1.1.4"; sha256="1iz1zbcz6w06x83bj5dw4w6vlqx1gcpy0qhmdjbavn90a3rr2gq7"; depends=[DBI directlabels dplyr editData ggplot2 lubridate openair purrr raster RColorBrewer readr readxl RODBC RSQLite shiny stringr tibble WriteXLS zoo]; }; + htsr = derive2 { name="htsr"; version="1.1.5"; sha256="126nxqllsinky22zb8s9rwlms4daw664v9s8jqcffflab2v2xr7j"; depends=[DBI directlabels dplyr editData ggplot2 lubridate openair purrr raster RColorBrewer readr readxl RODBC RSQLite shiny stringr tibble WriteXLS zoo]; }; httk = derive2 { name="httk"; version="2.2.1"; sha256="1pxv6ph6qnc6i3sgx2l2ixnsmbqsi1qs5392qxjia3vvx7gd9cmk"; depends=[data_table deSolve magrittr msm mvtnorm purrr Rdpack survey truncnorm]; }; httpRequest = derive2 { name="httpRequest"; version="0.0.11"; sha256="0qsi01fcrkps0h6r7l3l5ph3zlq9gscmq19b9ah2q2qlcv3hk4cf"; depends=[]; }; httpcache = derive2 { name="httpcache"; version="1.2.0"; sha256="026sl19301al3sid9hlwq8jz5b0zvh9a4n3cl4niqvc2b57h133r"; depends=[digest httr]; }; @@ -10648,7 +10707,7 @@ in with self; { hurricaneexposure = derive2 { name="hurricaneexposure"; version="0.1.1"; sha256="0a8xy71dkq2bzdnc90irxmbcxhi0anh87ic22x7b22c3m5605w6s"; depends=[data_table dplyr ggmap ggplot2 lazyeval lubridate mapproj maps purrr RColorBrewer rlang stringr tidyr]; }; hutils = derive2 { name="hutils"; version="1.8.1"; sha256="0pdya5gdyab5pwpgiw9yfa95m5ynqk154sydsfg56dxq1ihzfr74"; depends=[data_table fastmatch magrittr]; }; hutilscpp = derive2 { name="hutilscpp"; version="0.9.3"; sha256="0sh7s1y8wxwrbhdf8kz3x7myzk5jxv0h1yz1lrh345bvw1jdqb9i"; depends=[data_table hutils magrittr]; }; - huxtable = derive2 { name="huxtable"; version="5.5.0"; sha256="0xc5ahbxprzlj6z5gj680b61na340vcvk3bc0gh9qjgknhdwgk8v"; depends=[assertthat commonmark fansi generics glue htmltools memoise R6 rlang stringi stringr tidyselect xml2]; }; + huxtable = derive2 { name="huxtable"; version="5.5.1"; sha256="1ybfqldsla9y04qr4svcw1v7f38kcn6fjsgikdhnfngdz79md3x3"; depends=[assertthat commonmark fansi generics glue htmltools memoise R6 rlang stringi stringr tidyselect xml2]; }; hwde = derive2 { name="hwde"; version="0.67"; sha256="0wb2f9i5qi7w77ygh8bvydfpr7j5x8dyvnnhdkajaz0wdcpkyaqy"; depends=[]; }; hwep = derive2 { name="hwep"; version="2.0.0"; sha256="07ncpkv79nwk6c5a69iky3q01v24imcpszlhbhpsn739kdqdwa1p"; depends=[BH bridgesampling doFuture doRNG foreach future iterators pracma Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tensr updog]; }; hwig = derive2 { name="hwig"; version="0.0.2"; sha256="06a42a38qsjwijbbr2c8dsd7hjm751g1s4sgcmzvvfi6xy7svl3k"; depends=[asnipe data_table spatsoc]; }; @@ -10661,14 +10720,14 @@ in with self; { hybridModels = derive2 { name="hybridModels"; version="0.3.7"; sha256="0fj3dvv7s1hlicvlb077pkhbj894brzgdxhp67jck9zpy2qymzxq"; depends=[doParallel doRNG foreach ggplot2 GillespieSSA reshape2 stringr]; }; hybridogram = derive2 { name="hybridogram"; version="0.3.2"; sha256="14p2gwmgcaf84aycdc2a51frw2pccrffsjk8n83gvj2ans8phrr9"; depends=[pheatmap]; }; hydra = derive2 { name="hydra"; version="0.1.0"; sha256="0r3r8cds4h15narawxhzkrvgnf00vlgrgqdgnmbzjyyb1dmry8wn"; depends=[]; }; - hydraulics = derive2 { name="hydraulics"; version="0.5.0"; sha256="1dhy4mafivp4c2l6klr98xi6963gcrnvgf88bzb0j30fwxqwwhyb"; depends=[ggplot2 gtools reshape2 tibble units]; }; + hydraulics = derive2 { name="hydraulics"; version="0.6.1"; sha256="1yk1s9fnphzmkpx9pfawm72i07kdj099q6i6cry9p08bzvac80xk"; depends=[ggplot2 gtools purrr reshape2 tibble units]; }; hydroEvents = derive2 { name="hydroEvents"; version="0.10"; sha256="1w7nswdmg52ldzzz4gphqnp5gfgh9pvgyq9w0phpzj5ff19bxbxz"; depends=[]; }; hydroGOF = derive2 { name="hydroGOF"; version="0.4-0"; sha256="0fw8b66k7gdkdjxgmdpp3lk9d8p0wmlvhq2rkcvajjb5wd09f43a"; depends=[hydroTSM xts zoo]; }; hydroPSO = derive2 { name="hydroPSO"; version="0.5-1"; sha256="16gdv19yqla80s9fjmvahfn21jv62zivirzs5ch4zm9db54g6bry"; depends=[data_table Hmisc hydroGOF hydroTSM lattice lhs scatterplot3d sp vioplot zoo]; }; hydroTSM = derive2 { name="hydroTSM"; version="0.6-0"; sha256="1msavd2k05apsky88zkk1l3c6y3v95fwhmr6xmwsap70bj25krsv"; depends=[automap e1071 gstat lattice maptools sp xts zoo]; }; hydroToolkit = derive2 { name="hydroToolkit"; version="0.1.0"; sha256="0bij4365hczvq17wj9hp0570v35m8ili11mp9dzfj3mvhhqrc9p4"; depends=[ggplot2 lubridate plotly readxl reshape2]; }; hydrogeo = derive2 { name="hydrogeo"; version="0.6-1"; sha256="16m6yvr9yhvb0vdh9pqd6gzf3h9km7gd89y6risjddv6g83469k8"; depends=[]; }; - hydropeak = derive2 { name="hydropeak"; version="0.1.1"; sha256="0hddzvk8bjc31l3qh2pmhxwi8c1zgv3mycw5ki786x4kaym23qiq"; depends=[]; }; + hydropeak = derive2 { name="hydropeak"; version="0.1.2"; sha256="06x1qahavvhaqwdsjg65ixgc6migbm188v3w3vjng5xl2g2ybhqc"; depends=[]; }; hydrorecipes = derive2 { name="hydrorecipes"; version="0.0.3"; sha256="0if79msr8rn1ylk36sqa7maynz20v4y6q7h6xiqijlbnikm7n502"; depends=[dplyr earthtide fftw generics Rcpp RcppArmadillo RcppParallel recipes rlang tibble tidyr]; }; hydroroute = derive2 { name="hydroroute"; version="0.1.1"; sha256="1a1vlbq5cnvhq5mjk9imvj869xmmhq814zvvfysw7jp63z5gvd47"; depends=[dplyr ggplot2 ggpmisc gridExtra hydropeak lubridate reshape2 scales]; }; hydrostats = derive2 { name="hydrostats"; version="0.2.9"; sha256="11ipfp5dnl336wbsw0nrrcd68hccp8igvlrr93rc3hrvif3slkim"; depends=[]; }; @@ -10683,17 +10742,17 @@ in with self; { hypergeo = derive2 { name="hypergeo"; version="1.2-13"; sha256="13jdiy216znwhr91iqnh03mvkmyscw439syb3h4i67dd78sphnvd"; depends=[contfrac deSolve elliptic]; }; hyperoverlap = derive2 { name="hyperoverlap"; version="1.1.1"; sha256="10kcphn5zl1pl70xg9bn947i9mbnjxk03p6y7xhdlv152cihffw0"; depends=[e1071 ggplot2 MASS matlib misc3d rgl]; }; hypersampleplan = derive2 { name="hypersampleplan"; version="0.1.1"; sha256="1sk3s1jm46ac4i7p433s3kyngj86kq2821zzhp30a3y8vi1j2psq"; depends=[]; }; - hypervolume = derive2 { name="hypervolume"; version="3.0.4"; sha256="0wncmffj5rjpwwnfminjrmd3wj8x4yav87bbliffd520wrv758jz"; depends=[caret data_table doParallel dplyr e1071 fastcluster foreach geometry ggplot2 hitandrun ks maps MASS mvtnorm palmerpenguins pbapply pdist progress purrr raster Rcpp RcppArmadillo rgeos sp]; }; + hypervolume = derive2 { name="hypervolume"; version="3.1.0"; sha256="1zyp7w2mc5icp928m3lgvil6lk5ck8877kxbgz0wiimsxm0sdgcp"; depends=[caret data_table doParallel dplyr e1071 fastcluster foreach geometry ggplot2 hitandrun ks maps MASS mvtnorm palmerpenguins pbapply pdist progress purrr raster Rcpp RcppArmadillo rgeos sp]; }; hypoRF = derive2 { name="hypoRF"; version="1.0.0"; sha256="1yyq1pjxm9p395wq4zfimvcagspl8vlk0kzpa92pr084q5f7jcyr"; depends=[ranger]; }; hypothesisr = derive2 { name="hypothesisr"; version="0.1.1"; sha256="0z06risagphhvqiw4lrxy52q6q2yr10w2yxsm8iz1wh9ik097pcv"; depends=[dplyr httr jsonlite]; }; hypr = derive2 { name="hypr"; version="0.2.3"; sha256="08aga0cpmlq550f0k9gzfxgnwg9k5n8d7jcmvzz4k8bq2i3cnysk"; depends=[cli magrittr MASS Matrix pracma]; }; hypsoLoop = derive2 { name="hypsoLoop"; version="0.2.0"; sha256="0kwxzw2r406li2pmby92a3jik4k3z1vdgs54m4q45a8r8vz3y1nn"; depends=[dplyr ggplot2 PolynomF sf sjPlot stars terra]; }; - hystReet = derive2 { name="hystReet"; version="0.0.2"; sha256="01nrbk48r1hf1yc953yf1pzryzrjjckwdqhb3pbnwfza8q0aqsfq"; depends=[httr jsonlite lubridate]; }; + hystReet = derive2 { name="hystReet"; version="0.0.3"; sha256="1vrby9lgy0nm5wa5r1y3k3l2s9fc8vdf4szy8isvnzayr464xvwi"; depends=[httr jsonlite lubridate]; }; hysteresis = derive2 { name="hysteresis"; version="2.7"; sha256="1nnfr50nafhimj2j5xpxly3i8xvkwwddz864gklwm9jzdpmv02yh"; depends=[car MASS msm]; }; i18n = derive2 { name="i18n"; version="0.2.0"; sha256="1ksvrrpymflfbr7acnv3sh4xa0xqjp44ngdpkp500p50mwpww1wr"; depends=[magrittr]; }; i2dash = derive2 { name="i2dash"; version="0.2.3"; sha256="0pj4s47nbs67jnnk0dsna59lrn983zzkybbf6hf4s77sikshmwf0"; depends=[assertive_sets assertive_types flexdashboard glue htmltools knitr magrittr rmarkdown stringi stringr xfun ymlthis]; }; i2extras = derive2 { name="i2extras"; version="0.1.2"; sha256="0h9hy9qbw2lk0pxhrn2gygmcx731r38pj08iyfci5axp8fs0cizs"; depends=[data_table dplyr ellipsis ggplot2 incidence2 rlang tibble tidyr tidyselect trending vctrs]; }; - iAR = derive2 { name="iAR"; version="1.1.0"; sha256="1zzfazrkxpfv6nsy5x2ik14zhslda6xnl5wcl059hjbj3vvlhlcp"; depends=[ggplot2 Rcpp RcppArmadillo Rdpack]; }; + iAR = derive2 { name="iAR"; version="1.2.0"; sha256="0svxn81a0yq3m51594zrpy99i8p9zcfjzbxsi19yyfcm6iymzv24"; depends=[ggplot2 Rcpp RcppArmadillo Rdpack]; }; iAdapt = derive2 { name="iAdapt"; version="2.0.1"; sha256="050kzacvf19m8s89layqqf0l85db1k4cd3akb16jrv9wjfi9k61v"; depends=[Matrix shiny shinydashboard]; }; iBATCGH = derive2 { name="iBATCGH"; version="1.3.1"; sha256="0xq4q4kc2f0whrxz1vmi2gca9pxqix2qm4sfkwbch85if2k8l8fj"; depends=[msm Rcpp RcppArmadillo]; }; iBST = derive2 { name="iBST"; version="1.1"; sha256="0nyyzhscysc7dail5mwnw5w044q88m8sk2lg4xdkw52pdkw1a9z0"; depends=[Rcpp rpart survival]; }; @@ -10736,13 +10795,13 @@ in with self; { iadf = derive2 { name="iadf"; version="0.1.2"; sha256="18r9qyhicbfrkpqnxnn5i854s0afq4pnbaw2ckw1qrhy3pzys6zp"; depends=[dplR dplyr manipulate rlang tibble tidyr tidyselect]; }; iai = derive2 { name="iai"; version="1.8.0"; sha256="0gmfvzzc9yaisjkwdjddwg3cpxcm0gij7q74xxvmp076zplg09jv"; depends=[cowplot ggplot2 JuliaCall lifecycle rappdirs rjson rlang stringr]; }; ialiquor = derive2 { name="ialiquor"; version="0.1.0"; sha256="0nrp75lzb49lhkxspvaq6wx5c48ny6fq9m3r1bz0v5f2fd5ilrdx"; depends=[]; }; - iapws = derive2 { name="iapws"; version="1.0"; sha256="1njbarbl0a146x8y9g9y1r0yd2hjr2r67nqzaqha85dgfxn4x84j"; depends=[]; }; + iapws = derive2 { name="iapws"; version="1.1"; sha256="115m678kb2bz450pjg8a5jrjj3g2q2cgpyg9cksz3ysm6j5vrb1a"; depends=[]; }; iarm = derive2 { name="iarm"; version="0.4.3"; sha256="0ib8b37inq1hdzjm9y9bvk8x1qzn08vkvj3y75gg1swsqxh8w106"; depends=[eRm ggplot2 gridExtra Hmisc psychotools vcdExtra]; }; ib = derive2 { name="ib"; version="0.2.0"; sha256="10h3b9ncz59rp8j628axnrl7gksjiyg576672dhcyd3ygd4by7p5"; depends=[betareg Formula lme4 MASS Matrix Rdpack VGAM]; }; ibawds = derive2 { name="ibawds"; version="0.5.0"; sha256="1w4hm4gn5v7xj3gn54c3r0276c7ic441hn34q3j5qxwmh16af6qy"; depends=[dplyr dslabs ggplot2 magrittr remotes rlang scales stringr]; }; ibb = derive2 { name="ibb"; version="0.0.2"; sha256="11rfrf0ap97rsq0yy23sjahp1bin3j31zdd61p8b5mbp0s0k7ci4"; depends=[dplyr httr jsonlite magrittr rlang tibble tidyselect]; }; ibd = derive2 { name="ibd"; version="1.5"; sha256="0rxvy4hn4fpbv6y214ggkmgfvzwns5mkanp4h8201rjk3v84mk2r"; depends=[car emmeans lpSolve multcomp]; }; - ibdreg = derive2 { name="ibdreg"; version="0.3.6"; sha256="1x8z0vr2cmdks12hxfm0wwxskb0cr669w5j5rpa2ln8q704yy41g"; depends=[]; }; + ibdreg = derive2 { name="ibdreg"; version="0.3.8"; sha256="0c4svyfd7xjx9k6pl40l7y9rc67zschs0nz1l386xi1m7arsp44n"; depends=[]; }; ibdsim2 = derive2 { name="ibdsim2"; version="1.5.0"; sha256="1qbgk77cszf7hzsvxv2yqz07rzdh4vksxglx3wrzn5v18fm01c2q"; depends=[ggplot2 glue pedtools Rcpp ribd]; }; ibelief = derive2 { name="ibelief"; version="1.3.1"; sha256="0fl2vvyl2qygppcycbnjkmlvq6rmxq18y1hk512d6szgi0czvpls"; depends=[]; }; ibm = derive2 { name="ibm"; version="0.1.0"; sha256="0g6wg2qpa4q142xw2vq5pca4ll6pb8hyll5g0c93kk8crddk51s7"; depends=[Rcpp]; }; @@ -10756,7 +10815,6 @@ in with self; { icRSF = derive2 { name="icRSF"; version="1.2"; sha256="1a7046lspk70cvrvzwzhnqcmc3cqa5a9bmzlw012jvcn39m2ca3l"; depends=[icensmis Rcpp]; }; ica = derive2 { name="ica"; version="1.0-3"; sha256="0rdqd3kz2cv3xvf6yz55bwhsg3k7j90d450i3azs2xkbn4q3aka7"; depends=[]; }; ical = derive2 { name="ical"; version="0.1.6"; sha256="1raanaagas1c8w66d8s045z5ip1i97xca4233d55jk6cazv0mb1w"; depends=[V8]; }; - icapca = derive2 { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; }; icardaFIGSr = derive2 { name="icardaFIGSr"; version="1.0.2"; sha256="1yysqkyr36388i8za8jhz0m1vdn3jv8kpb24pnhbxlwsq8r5x0jr"; depends=[caret doParallel dplyr foreach ggplot2 httr leaflet magrittr plotROC plyr raster reshape2 sp]; }; icarus = derive2 { name="icarus"; version="0.3.1"; sha256="0ipbhzvwdn1cnzgdw33cwv901768srxfi588bimjx2ssl80mqn3a"; depends=[]; }; iccCounts = derive2 { name="iccCounts"; version="1.1.1"; sha256="0h1bjnyl24i2y8z1pys4k89q2dy5cfd808bc7w54j1vyyap0k899"; depends=[Deriv dplyr ggplot2 glmmTMB gridExtra VGAM]; }; @@ -10779,7 +10837,7 @@ in with self; { icesSD = derive2 { name="icesSD"; version="2.0.0"; sha256="1k0i79hh63bmsqw5m6ym2h3dydrjji57lkysp5n9x293lgh04pf2"; depends=[httr icesConnect]; }; icesTAF = derive2 { name="icesTAF"; version="4.0.0"; sha256="1qzy0hplrxvdkvly25ny3fysqdhw538phwgnhshq761sa8gdq8vf"; depends=[purrr roxygen2 TAF]; }; icesVocab = derive2 { name="icesVocab"; version="1.2.0"; sha256="0cd2w0w2m176mpfd3lzvxl88bcli1qrkjrli539i764nlyh0ipl0"; depends=[xml2]; }; - ichimoku = derive2 { name="ichimoku"; version="1.4.2"; sha256="0jv7jli3kv8iqffhn6xvz0dhzkxgly546l154xx95jdapgvwmjgy"; depends=[ggplot2 jsonlite nanonext shiny xts zoo]; }; + ichimoku = derive2 { name="ichimoku"; version="1.4.3"; sha256="11vmjmi1csmnhwbkd4lspa7cmvh2rs2qrq7ncnl5wnnjf9ljrn2m"; depends=[ggplot2 nanonext RcppSimdJson shiny xts zoo]; }; icmm = derive2 { name="icmm"; version="1.2"; sha256="179q8w60g4yrv6wqgfmg47by1zc1mbhsdjgl7jq4wirqvwnxvgym"; depends=[EbayesThresh]; }; iconr = derive2 { name="iconr"; version="0.1.0"; sha256="17q7zj92yrj49slmrpwkxkjd0imrl9ildms9zj8qx7yc7dcv4c1s"; depends=[igraph magick rgdal]; }; icosa = derive2 { name="icosa"; version="0.10.1"; sha256="025bqlgx4p1kxpmizfzgiamcq2f5nj5m2ky25fpgdm714sybvwvi"; depends=[igraph Rcpp sp]; }; @@ -10787,7 +10845,7 @@ in with self; { icr = derive2 { name="icr"; version="0.6.2"; sha256="1xqvzn02x13d706irv83zycpxhm8yq1c34rh1nphddy5gri7gwjb"; depends=[Rcpp]; }; icrf = derive2 { name="icrf"; version="2.0.2"; sha256="1apd9klng8dhd9z9nzqzpx8i84rvpwgyam9mzyh8jk6vd49cgjaf"; depends=[]; }; icsw = derive2 { name="icsw"; version="1.0.0"; sha256="0g7bcqs0rpbs1p202i9wjbl8hhy3r196zambm044xyf7kvsbzzf6"; depends=[]; }; - idar = derive2 { name="idar"; version="1.3"; sha256="16n2vpc6zx8sz2pr8nmza7127s3vwinjrrmmxc63q8cmb1ifi3gv"; depends=[ape FD picante spatstat spatstat_core spatstat_geom spatstat_random]; }; + idar = derive2 { name="idar"; version="1.4"; sha256="082p469ng6gmn48l45n6j2wivv4nq9mkl0pb1nclri2f566l95mf"; depends=[ape FD picante spatstat spatstat_explore spatstat_geom spatstat_random]; }; idbr = derive2 { name="idbr"; version="1.0"; sha256="0silsd3ydrrg924klga8dascxjfmi2czw7sz3ap2j7gkgvxcfcpv"; depends=[countrycode dplyr httr jsonlite purrr rnaturalearthdata sf]; }; ideamdb = derive2 { name="ideamdb"; version="0.0.9"; sha256="1f4dcv6c8ny7pik547f4840vhll26mzfcijnfsiqx31xhn0gsizd"; depends=[dplyr ggplot2 stringr tidyr]; }; idefix = derive2 { name="idefix"; version="1.0.3"; sha256="0jqjrg0qfzij5bx8r60wpjghsxnszdxgp58ynj10n7q9hc4fhsys"; depends=[dfidx dplyr MASS Rcpp RcppArmadillo Rdpack scales shiny tmvtnorm]; }; @@ -10798,10 +10856,11 @@ in with self; { idm = derive2 { name="idm"; version="1.8.3"; sha256="04ac2yq983vk9v3iyd1p2sqxy8ppdr4p7bcvfbg2d9fanj4b1fa7"; depends=[animation ca corpcor ggplot2 ggrepel]; }; idmTPreg = derive2 { name="idmTPreg"; version="1.1"; sha256="1329sjb4dnw3yiyg16whbj4l2v0kg8phg1x4ysvyp2kqkmw14yq6"; depends=[doParallel foreach survival]; }; idmodelr = derive2 { name="idmodelr"; version="0.4.0"; sha256="11h7l1iv21jxmjwmg0klwiadvwpn1bj055y4a7fqfgsbbqraxlsj"; depends=[deSolve dplyr furrr future ggplot2 magrittr purrr rlang stringr tibble tidyr viridis]; }; + idopNetwork = derive2 { name="idopNetwork"; version="0.1.1"; sha256="0cqnand3yfw2pwanmradwqdd9dyrxw99iric023w12bva826aalz"; depends=[deSolve ggplot2 glmnet igraph mvtnorm orthopolynom patchwork reshape2 scales]; }; idr = derive2 { name="idr"; version="1.3"; sha256="1r6icxf0c0y9wvihwmkk5xqscr1qhacqk3w2076kjm2993f10fbb"; depends=[]; }; ids = derive2 { name="ids"; version="1.0.1"; sha256="1s6ga94gds5ydr9f8qbjfgfpg2dvbnkcrlybqlb33hk3c0c2l8dn"; depends=[openssl uuid]; }; idx2r = derive2 { name="idx2r"; version="1.0.0"; sha256="14d3rasnf8mghwzpg6h4larybgy7drrv0jh71x28qwry49acsqyh"; depends=[]; }; - ie2misc = derive2 { name="ie2misc"; version="0.8.8"; sha256="06nf5g6lcn8wif9k3qd580s2w30yyqqvybzg36q2mil8fnpl2568"; depends=[assertthat checkmate data_table gWidgets2 gWidgets2tcltk lubridate mgsub openxlsx reader readxl stringi]; }; + ie2misc = derive2 { name="ie2misc"; version="0.9.0"; sha256="0cawlkhyfrwwcnqcp1lc1wc4a42ax4r9g9nzbl88sfjxy3fyirkx"; depends=[assertthat checkmate data_table gWidgets2 lubridate mgsub openxlsx reader readxl stringi]; }; ie2miscdata = derive2 { name="ie2miscdata"; version="1.0.2"; sha256="0n5aya9g5xzbnx611ji7bxy2zb04ijmjb8kc6ac7kb2nm9n6dxbn"; depends=[lubridate]; }; ieeeround = derive2 { name="ieeeround"; version="0.2-0"; sha256="0xaxrlalyn8w0w4fva8fd86306nvw3iyz44r0hvay3gsrmgn3fjh"; depends=[]; }; iemisc = derive2 { name="iemisc"; version="0.9.9"; sha256="1hay4d85xw81cgzkm21db8mssqqb8cw4bsg3qypm59bqwmqpl8md"; depends=[CHNOSZ data_table fpCompare gsubfn iemiscdata pracma r_import rgdal sp stringi testit units zoo]; }; @@ -10810,12 +10869,12 @@ in with self; { ifCNVR = derive2 { name="ifCNVR"; version="0.1.0"; sha256="0qcmgd3vi413n4ipa6ybkr7a1kwxyr2al8cw4gfr8fp2av1sk4vc"; depends=[data_table isotree rmarkdown]; }; ifaTools = derive2 { name="ifaTools"; version="0.23"; sha256="16xf3165gkmh3f9843m0n4wqdwwdfs6rjh64qcpz8srsm2z5y3l2"; depends=[ggplot2 OpenMx reshape2 rpf shiny]; }; ifctools = derive2 { name="ifctools"; version="0.3.4"; sha256="1cxxk1ysb5ya81g669xyalzmkpfjsjsrrqmvnsg1z0kwh5yv54ds"; depends=[]; }; - ifs = derive2 { name="ifs"; version="0.1.9"; sha256="0gz2zwbv0qvlsc6cv9dk2wfni72ahb6rh1vcsbd52cd6bflh3nh0"; depends=[]; }; + ifs = derive2 { name="ifs"; version="0.1.10"; sha256="0w27z3fjv007717dsn72bm9hbpgzd6pfib6maf9ihnsjllb6k0v5"; depends=[]; }; ifultools = derive2 { name="ifultools"; version="2.0-26"; sha256="1lkmzrh65j6vdb8523axxk9gig5q4zxy08wiqsp16w482d2q2sl1"; depends=[MASS splus2R]; }; ig_vancouver_2014_topcolour = derive2 { name="ig.vancouver.2014.topcolour"; version="0.1.2.0"; sha256="0yclvm6xppf4w1qf25nf82hg1pliah68z7h3f683svv0j62q748h"; depends=[]; }; igate = derive2 { name="igate"; version="0.3.3"; sha256="0b8dk976z0764cmxwcq6w2f3akv7iivivharinq029p90b600qza"; depends=[dplyr ggplot2 kableExtra knitr rmarkdown stringr xtable]; }; igcop = derive2 { name="igcop"; version="1.0.1"; sha256="0jl107mdwbldi319qflqjzy8vk02sr4nihky8jl5kcgr6x55qh6z"; depends=[Rcpp rlang vctrs]; }; - iglu = derive2 { name="iglu"; version="3.3.2"; sha256="1pki85jxdsd8pvandva6sxqy9ymr18izp88rpmmsvay14wk7jfwx"; depends=[caTools dplyr ggplot2 ggpubr gridExtra gtable hms lubridate magrittr patchwork scales shiny tibble tidyr zoo]; }; + iglu = derive2 { name="iglu"; version="3.4.2"; sha256="0ilfkmwmh3xshd67y45v9kvyd69xgf8wmxcw3hxi9zpsb0r4vmsb"; depends=[caTools dplyr ggplot2 ggpubr gridExtra gtable hms lubridate magrittr patchwork scales shiny tibble tidyr zoo]; }; igoR = derive2 { name="igoR"; version="0.1.4"; sha256="00ngw366ir3dxz73v6sc8q6y9hd5wzf09jy4fmwb8hsv4nplnbdk"; depends=[]; }; igraph = derive2 { name="igraph"; version="1.3.5"; sha256="1m4vbc1v2wvjn9df7w9ax0zpr3ys566bqazcakx7vddmnrkmsqcy"; depends=[magrittr Matrix pkgconfig rlang]; }; igraphdata = derive2 { name="igraphdata"; version="1.0.1"; sha256="19w5npa4b8c054v94xlr7nmhhg2fhq4m8jbds86skp8zvipl4rkl"; depends=[]; }; @@ -10824,10 +10883,9 @@ in with self; { igrf = derive2 { name="igrf"; version="1.0"; sha256="1287mx1fpbq9y8jbyb43hlignkqg313rn3kc52pm6b2n77ipkrc6"; depends=[]; }; ihclust = derive2 { name="ihclust"; version="0.1.0"; sha256="049jlx8bspl1md06zyh3m7fr666cymmcwarsjrkr8pdd7vlg918j"; depends=[doParallel factoextra foreach ggplot2]; }; iheatmapr = derive2 { name="iheatmapr"; version="0.5.1"; sha256="1pwkwh7ljlpr6zyz6j8knpz3iw60xzkw8amc98x4pc2mw148jvzx"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr RColorBrewer scales]; }; - iheiddown = derive2 { name="iheiddown"; version="0.9.5"; sha256="06daza20mxki18kxjc9ycyjm7vvvrrd44gzb9pcfd5cyfbg4h12v"; depends=[bib2df bookdown crayon dplyr fs gender ggplot2 pagedown pdftools readr rlang rmarkdown rstudioapi servr stringr tibble tidytext usethis xaringan]; }; + iheiddown = derive2 { name="iheiddown"; version="0.9.7"; sha256="1h7cb52wk0z5na543v78vjj2xh77kj3nwgl5vgqnf5186mrknh5v"; depends=[bib2df bookdown crayon dplyr fs gender ggplot2 pagedown pdftools readr rlang rmarkdown rstudioapi servr stringr tibble tidytext usethis xaringan]; }; ihpdr = derive2 { name="ihpdr"; version="1.2.1"; sha256="1qa9ndb5aqbmlqbl0ivh10ddah2rbhsc6928dml20fjgz7lggdww"; depends=[curl dplyr httr lubridate magrittr purrr readxl rlang rvest tidyr xml2]; }; - iilasso = derive2 { name="iilasso"; version="0.0.2"; sha256="043m1n5840459zsknkb54801apb0a2cqfprncmj2wp235rbqj832"; depends=[BH Matrix Rcpp]; }; - ijtiff = derive2 { name="ijtiff"; version="2.2.8"; sha256="0r7r2pxs0q97sm56ypg372aazvv85dx516sziw33gg4dn59b1qz3"; depends=[checkmate cli dplyr fs magrittr purrr readr rlang strex stringr withr zeallot]; }; + ijtiff = derive2 { name="ijtiff"; version="2.2.9"; sha256="1v8np6m8dqc6a3crz3gi6yl8i5y2a9sc2nxlds7as0m6gdqrwc69"; depends=[checkmate cli dplyr fs magrittr purrr readr rlang strex stringr withr zeallot]; }; imabc = derive2 { name="imabc"; version="1.0.0"; sha256="1p420jlvqqcqdjqp7y4mcjkzimw3qiygph5yrvmm75znax3fkg4z"; depends=[data_table foreach lhs MASS truncnorm]; }; image_CannyEdges = derive2 { name="image.CannyEdges"; version="0.1.0"; sha256="0c8pvk91xyys6d2i03yy88kylb3jli5jkpq2s069n7p0yl3z7rr1"; depends=[Rcpp]; }; image_ContourDetector = derive2 { name="image.ContourDetector"; version="0.1.1"; sha256="0h9nq6k99rfmldw1c00k2anlpbjbpm26pp1d7jg2wz334dvlvlij"; depends=[Rcpp sp]; }; @@ -10850,7 +10908,7 @@ in with self; { imaginator = derive2 { name="imaginator"; version="1.0.0"; sha256="0wjgfsp7dhy8q7rai4bvikmw1y3iancnqdnqlhbi7a563s4mkpkr"; depends=[assertthat checkmate distributions3 dplyr lubridate magrittr rlang stringi tibble]; }; imagine = derive2 { name="imagine"; version="1.5.4"; sha256="0bbkxhwicjy0h24v93h8cvi17ipy82kb4zwkm7pyg8q48bqssdp0"; depends=[Rcpp]; }; imbalance = derive2 { name="imbalance"; version="1.0.2.1"; sha256="14f7p3x8818b1asfynp3w4sxdacsd14dzs7r166s1jdadwwfwi1s"; depends=[bnlearn C50 FNN ggplot2 KernelKnn mvtnorm Rcpp RcppArmadillo smotefamily]; }; - imbibe = derive2 { name="imbibe"; version="0.1.0"; sha256="0l7wn7vcbb466a4i3w302ficdy0jvy2jh5qizfn7ahpcs7lpx6hr"; depends=[magrittr Rcpp RNifti]; }; + imbibe = derive2 { name="imbibe"; version="0.1.1"; sha256="03vaz5vippnmbgs2l4gxpmsnrkxjw7d156ng13r07zicq43g9gwp"; depends=[magrittr Rcpp RNifti]; }; imcExperiment = derive2 { name="imcExperiment"; version="0.99.0"; sha256="0fagasb94q7gxx49c7n4p2cb9j3n5qnfx86s7nvz4naicy96qbyr"; depends=[S4Vectors SingleCellExperiment spatstat_geom SummarizedExperiment]; }; imdbapi = derive2 { name="imdbapi"; version="0.1.0"; sha256="11v7c0s7qqf02b186md5lhgkgmywkn8lmmanlz3gfcxca26g047y"; depends=[dplyr httr stringr]; }; imgpalr = derive2 { name="imgpalr"; version="0.3.1"; sha256="0v9npy63mv9r9wnd8pcdw4rkr0bybhhmkj36sza7dah92i06il17"; depends=[downloader dplyr farver jpeg magrittr tibble]; }; @@ -10874,6 +10932,7 @@ in with self; { importar = derive2 { name="importar"; version="0.1.1"; sha256="0xv445fmjhsbdlsq03k2rlycnggn3rcyq5a49zrg4jvjamzr0rgr"; depends=[]; }; importinegi = derive2 { name="importinegi"; version="1.1.3"; sha256="1r0p01mc9wb24ifldn3dmi0fqxwkp0290h0qrgr72grd34v2xszc"; depends=[data_table dplyr foreign haven rgdal]; }; impressionist_colors = derive2 { name="impressionist.colors"; version="1.0"; sha256="03z5w7y7vbvlnn30r9y3ip93h364f87nhwdb9hcki26csiq2bnlv"; depends=[]; }; + imprinting = derive2 { name="imprinting"; version="0.1.0"; sha256="1rw9x9prw0by4r2prdypqkgs7d2vj5gdjxhw6gk9ikkb3zyvfgmz"; depends=[cowplot dplyr ggplot2 tidyr tidyselect]; }; imptree = derive2 { name="imptree"; version="0.5.1"; sha256="0f087000092ydnpj3ch4mbip8wp32scn8xw4vlkq5lf6130gfs1b"; depends=[Rcpp]; }; imputeFin = derive2 { name="imputeFin"; version="0.1.2"; sha256="11qd43zs8gd3fg3f47lrb6b4r0w7kxczain61bxc67ppzflrafmd"; depends=[magrittr MASS mvtnorm zoo]; }; imputeGeneric = derive2 { name="imputeGeneric"; version="0.1.0"; sha256="16680bkx1p5w0l5jh6g8f0qbcv0alw9xr2gkbhfs0rpbv5canl7f"; depends=[gower parsnip]; }; @@ -10887,7 +10946,7 @@ in with self; { imputeYn = derive2 { name="imputeYn"; version="1.3"; sha256="1b21w1aa5f7yiq8k0wa86wvbg4ij7f6ldwn6asfqwb0b90rvsgvs"; depends=[boot emplik mvtnorm quadprog survival]; }; imsig = derive2 { name="imsig"; version="1.1.3"; sha256="175is0b39grc609dskv9274czv4iwnmlg81dl4nr01xdp6f7g487"; depends=[ggplot2 gridExtra HiClimR igraph RColorBrewer survival]; }; in2extRemes = derive2 { name="in2extRemes"; version="1.0-3"; sha256="1lgsqm29zmjyf8kynyra2p3q7bs4fyd7ac4v6s3pbahzhhzdk94y"; depends=[extRemes]; }; - inTextSummaryTable = derive2 { name="inTextSummaryTable"; version="3.2.0"; sha256="0c8kkvpiq4djfg1qc127iql4g1b4mzmhhx5hc9f2vi0rhicyng9k"; depends=[clinUtils cowplot flextable ggplot2 ggrepel magrittr officer plyr reshape2 scales]; }; + inTextSummaryTable = derive2 { name="inTextSummaryTable"; version="3.2.1"; sha256="0g4ckd7hicm62ki8yg0a7bkw91gjzdlcrhhvvgsyxb8xq66x28gx"; depends=[clinUtils cowplot flextable ggplot2 ggrepel magrittr officer plyr reshape2 scales]; }; inTrees = derive2 { name="inTrees"; version="1.3"; sha256="1afyjh2winb591am1cawchkysyslzv01nwyihvjb7n844pqr5s2j"; depends=[arules data_table gbm RRF xgboost xtable]; }; inaparc = derive2 { name="inaparc"; version="1.2.0"; sha256="0y3m2g5y12wj4af1wiqyi7nlb11avissd59g202rha0wqwzd8q3f"; depends=[kpeaks lhs]; }; inbreedR = derive2 { name="inbreedR"; version="0.3.3"; sha256="0g7h4jgmnbpm4c6pb6fkmpzdg4adkc0k72444jpxbvyddq3hqh24"; depends=[data_table]; }; @@ -10913,7 +10972,7 @@ in with self; { ineq = derive2 { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; ineqJD = derive2 { name="ineqJD"; version="1.0"; sha256="0anv384jwzn5gkc0jqsl81bkmrjd21br99c5q30xd6ncxavj4s57"; depends=[]; }; inet = derive2 { name="inet"; version="0.1.0"; sha256="1kjy2kgi5v29yk6pv776gwdqzkscjh96p3iv1j906vh47zp8wrag"; depends=[glmnet hdi MASS]; }; - infer = derive2 { name="infer"; version="1.0.3"; sha256="1m5srhcmkh8wq12pvy57g3g703wilkl8r3gmm5s7lbj103iz7v8b"; depends=[broom dplyr generics ggplot2 glue magrittr patchwork purrr rlang tibble tidyr]; }; + infer = derive2 { name="infer"; version="1.0.4"; sha256="1s4q0nslykl0pb2w1i6ni6hkpp7awvp0wks79br3gk5wa1qkvs19"; depends=[broom dplyr generics ggplot2 glue magrittr patchwork purrr rlang tibble tidyr]; }; inferference = derive2 { name="inferference"; version="1.0.2"; sha256="171h9zhvaza7fklcg07wk9sm8k2fy39k3cdjkzb3vk8p8acd051v"; depends=[Formula lme4 numDeriv]; }; inferr = derive2 { name="inferr"; version="0.3.1"; sha256="1ma90f31jcd65l5v3wqbx4x61gw3iay1a2hwjsd5aln1ivbgmzsv"; depends=[data_table magrittr Rcpp]; }; infinitefactor = derive2 { name="infinitefactor"; version="1.0"; sha256="0j6f9q8z81znwakyx4h0l8ypz0y4yv11d7l3rwljmn4rgspyjl5c"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; @@ -10933,28 +10992,27 @@ in with self; { ingredients = derive2 { name="ingredients"; version="2.2.0"; sha256="11bv4l4fn9kr7y2nfzrwnaya8fi9w3nwcm9vzlqb7dva83rkqbsc"; depends=[ggplot2 gridExtra scales]; }; ini = derive2 { name="ini"; version="0.3.1"; sha256="04yqij344dwm0xqgara8xia42mlmij3i8711qbb5534w05a1l6bv"; depends=[]; }; injectoR = derive2 { name="injectoR"; version="0.2.4"; sha256="0sa32cspp6y3m04yfmd02kxx55mk7l9jxf4r9pk1a6k3sqnj6fl8"; depends=[]; }; - inlabru = derive2 { name="inlabru"; version="2.6.0"; sha256="0fjjw02scf2sr1i6cl6h28pj10vf6i2jysc8iha1gcc4j02qxfs0"; depends=[magrittr Matrix MatrixModels patchwork plyr rgdal rgeos rlang sf sp withr]; }; + inlabru = derive2 { name="inlabru"; version="2.7.0"; sha256="1b6ykgb1l1bq8mz4b40li6ypxh1r9yxl4jlcv8mwmkkfrgmz9rvp"; depends=[lifecycle magrittr Matrix MatrixModels patchwork plyr rgdal rlang sf sp withr]; }; inline = derive2 { name="inline"; version="0.3.19"; sha256="1mcr9hgq6kkq03n7pkcccxa7vg8jma0q7lfxc5vvkc6snydk1s8f"; depends=[]; }; inlinedocs = derive2 { name="inlinedocs"; version="2019.12.5"; sha256="11d8cnrzgq95w7hn234rcwrr1mmrv63f69807pnzxizxbgnp7wz3"; depends=[]; }; - inlmisc = derive2 { name="inlmisc"; version="0.5.5"; sha256="0d7yqbd7bqsk312g28pqgdpcpqd06abyra2inmnj8fkgpmv3wjf6"; depends=[checkmate data_table GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos rmarkdown scales sp tinytex webshot wordcloud2 xtable yaml]; }; inlpubs = derive2 { name="inlpubs"; version="1.0.4"; sha256="0yzi5x4kyjnb6mjfknqs6415ryf44r55qifh9d2s9nzbhk5y11mg"; depends=[checkmate tm]; }; innsight = derive2 { name="innsight"; version="0.1.1"; sha256="0snnr0mqs0qhng4d73dqn2l6zzw11pdyipszxf1mhxh7mmssnn22"; depends=[checkmate ggplot2 R6 torch]; }; ino = derive2 { name="ino"; version="0.2.0"; sha256="16b38gf30n25dz205y77lr8aj0f39bamc6sbgjfq2kg2vbq700iw"; depends=[ao cli crayon doSNOW dplyr foreach ggplot2 mvtnorm optimizeR progress rlang]; }; inops = derive2 { name="inops"; version="0.0.1"; sha256="1y402a9r542hpwd1nfdc07mbgnf9alpnykl9di1v8fy0qly8s0an"; depends=[]; }; inpdfr = derive2 { name="inpdfr"; version="0.1.11"; sha256="1wnz73ggc7xcgynvdlvgz26qkfjmxxy0xg8gkf1far5346g4qd9y"; depends=[ca cluster entropart metacom R_devices RColorBrewer SnowballC stringi tm wordcloud]; }; inplace = derive2 { name="inplace"; version="0.1.2"; sha256="06jb8xzjqywdww8j2i59c8663dfbrhnvj0lh3xm73j39sig6vh7l"; depends=[Rcpp]; }; - insane = derive2 { name="insane"; version="0.1.0"; sha256="144fq1lys6wy78vnmz1vd4ghs8agraj1hgg0vwlxcnbykmf50i95"; depends=[broom dplyr DT ggbeeswarm ggplot2 ggpubr ggthemes glue patchwork purrr readxl shiny tidyr]; }; + insane = derive2 { name="insane"; version="1.0.1"; sha256="0hzznlmvyw0v0a78q7mfnjps8453mmb3pig7srn98bkxv6f6vcp8"; depends=[broom dplyr DT ggplot2 ggpubr ggthemes glue patchwork purrr readxl shiny tidyr]; }; insect = derive2 { name="insect"; version="1.4.2"; sha256="0pbac9il1jrhii0hxvvqjc3phyr2iamxwzanxx5mrkyjh2wsl3jh"; depends=[ape aphid kmer openssl phylogram RANN seqinr xml2]; }; insectDisease = derive2 { name="insectDisease"; version="1.2.1"; sha256="0aa85sxmrhvhjrqnrv264bns577v0n0n6rqzm9m4cg9q7dilhxsn"; depends=[plyr taxize]; }; insee = derive2 { name="insee"; version="1.1.5"; sha256="1f6y19dysm0mh3fkrwnqcgi5j1lzy08m3ij3wrx26q2vgwv5lkfg"; depends=[crayon dplyr httr openssl purrr rappdirs rlang stringr tibble tidyselect xml2]; }; - insight = derive2 { name="insight"; version="0.18.6"; sha256="1bhwfx75lnjrvn6byl2dn8fzfh2in2msghxwyy9jwpvnxk4c63db"; depends=[]; }; + insight = derive2 { name="insight"; version="0.18.8"; sha256="01bm7w8f80i550gwv41kakaxp0d5a2pqa2s3ihz36snkczmdlapm"; depends=[]; }; insol = derive2 { name="insol"; version="1.2.2"; sha256="166kgxgzbh55y2qqya6c2si22x0v7asi70im054g6xxwc5187kh3"; depends=[raster]; }; inspectdf = derive2 { name="inspectdf"; version="0.0.12"; sha256="1k9dszjfpvpc10qr9nbw5r55mdwslgblhlrgnqjnwx9i89j03mlk"; depends=[dplyr ggfittext ggplot2 magrittr progress Rcpp rlang tibble tidyr]; }; inspector = derive2 { name="inspector"; version="1.0.3"; sha256="16gc98af6wmwf32fz8zml5v17g5lkiybzyzsqgphx0k19hrbc6kr"; depends=[Rdpack]; }; instaR = derive2 { name="instaR"; version="0.2.4"; sha256="0c4m471ragkpksr0h21cdgnjxcknf01xqz543dahxgzjg9ncjwhg"; depends=[httr jsonlite]; }; instagramadsR = derive2 { name="instagramadsR"; version="0.1.0"; sha256="1g2gikps3qraa12x8vfxsyanxg2mkcix57pcsh5myi1lcp5r2y5z"; depends=[jsonlite]; }; - install_load = derive2 { name="install.load"; version="1.2.3"; sha256="0z4klcpwdlmhwvk41z9q4c4382z8glad27h0gai93zyciy44sdyx"; depends=[assertthat checkmate fastmatch]; }; - installr = derive2 { name="installr"; version="0.23.2"; sha256="1xyzap1injimyib16srhbm0hchh1bcd5vg9d9wbvhf8dlpkaxw4q"; depends=[stringr]; }; + install_load = derive2 { name="install.load"; version="1.2.4"; sha256="0ylis31bxyqhjpwb1fwadgb8wwrcjq4p8mrznqckrx6a0f6sai0m"; depends=[assertthat checkmate fastmatch]; }; + installr = derive2 { name="installr"; version="0.23.4"; sha256="1qlwcww3bgbdfqk2qi1vvis11bnvkkwa6h2l195knhx0i0ha8pfj"; depends=[stringr]; }; insuranceData = derive2 { name="insuranceData"; version="1.0"; sha256="0wryh8i1v3bnpbqn6d6dpxr9bwwl6mnh5cb5igz0yanh4m1rx96w"; depends=[]; }; insurancerating = derive2 { name="insurancerating"; version="0.7.1"; sha256="0sd8bwfb7gv4yq2slm1msw5an19f5fc7a1w7c6byc26whkhdzj10"; depends=[ciTools classInt colorspace data_table DHARMa dplyr evtree fitdistrplus ggplot2 insight lubridate magrittr mgcv patchwork scales stringr]; }; intRegGOF = derive2 { name="intRegGOF"; version="0.85-5"; sha256="0xjq8vdlgqlzrvp752gd4qfrpnpapx7k6xzfsvfril8ngvm9a162"; depends=[]; }; @@ -10967,7 +11025,7 @@ in with self; { intePareto = derive2 { name="intePareto"; version="0.1.2"; sha256="0shq97r6x4j7p9vcf855jcvmfhghngbhk5dfqlqqhhcf8ibm2si5"; depends=[biomaRt DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges rPref Rsamtools]; }; integIRTy = derive2 { name="integIRTy"; version="1.0.7"; sha256="15f04p97fvqdq971adyafm3ljirfxz90lv096fdqn2vk0sq5dwyj"; depends=[abind doParallel foreach ltm MASS mclust]; }; integr = derive2 { name="integr"; version="1.0.0"; sha256="172vj29bdk42ibgwj7dl06wslpg2dccp1i8iscbz1yd0j5kw36sq"; depends=[DiagrammeR DiagrammeRsvg dplyr gtools rsvg]; }; - intensegRid = derive2 { name="intensegRid"; version="0.1.1"; sha256="15vjf39fx6bkay15nbmqnv5vp8w6xy6fzf1lglqr6506pyaqh8w8"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr]; }; + intensegRid = derive2 { name="intensegRid"; version="0.1.2"; sha256="1dhk14rxy7c2pawcg89bhbnx30nzi5hppywmf41aa7f40x2m7wxs"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr]; }; intensity_analysis = derive2 { name="intensity.analysis"; version="0.1.6"; sha256="1ydmn7njqk6i2667zaha8mvfndss4im39czadg1f3z6sndp2lsji"; depends=[diffeR ggplot2 raster reshape2 rgdal]; }; intensitynet = derive2 { name="intensitynet"; version="1.3.1"; sha256="0g0lkbfyg0f104avr0y46caaa300yibzqlbhn32hl03sa0dqd6c3"; depends=[ggplot2 igraph intergraph Matrix sna spatstat_geom spdep viridis]; }; interactionR = derive2 { name="interactionR"; version="0.1.6"; sha256="1k6fn0y69s8dq14yqqai4qm97cdyp7sfn8ni19xs2h8hwgmxdhf9"; depends=[car flextable msm officer]; }; @@ -10985,7 +11043,6 @@ in with self; { interp = derive2 { name="interp"; version="1.1-3"; sha256="0gzsnlg8f7knb100n6vv6307c3v2jd8f9qzrq62jkc6g71mn0kmp"; depends=[deldir Rcpp RcppEigen]; }; interplex = derive2 { name="interplex"; version="0.1.0"; sha256="04ylskk2i9pmidknz5wfwba87d710gycrw3p3d29nd2s433scrbk"; depends=[]; }; interplot = derive2 { name="interplot"; version="0.2.3"; sha256="1qs0ni16rbjilkahn15yn9sil3ba4n935bxpdbpwlsjina504jqj"; depends=[abind arm dplyr ggplot2 interactionTest purrr]; }; - interpret = derive2 { name="interpret"; version="0.1.26"; sha256="0f7bhz5gj0f5dxjcc9xlrx4y474akn6q0d7z71yypyw6bawvqkbn"; depends=[]; }; interpretCI = derive2 { name="interpretCI"; version="0.1.1"; sha256="1jg2dpfrhb1kij2z0gq4sw1lrb4v2sky13dpfmdnaz2k5xqnih2s"; depends=[aplot dplyr english flextable ggbeeswarm ggplot2 moonBook officer patchwork purrr RColorBrewer rlang rmarkdown rstudioapi scales tidyr]; }; interpretR = derive2 { name="interpretR"; version="0.2.4"; sha256="0nfh3pyr7nn0r41xk0mfb4fs5rjkbh43lbw14x7pdmbgzpgsc22c"; depends=[AUC randomForest]; }; inters = derive2 { name="inters"; version="0.1"; sha256="0z0sx02ami2mk5ppdawy9j9lb7nmn25b9g6lanchqhxmiffzg3r1"; depends=[fixest glmnet]; }; @@ -10993,7 +11050,7 @@ in with self; { intervalaverage = derive2 { name="intervalaverage"; version="0.8.0"; sha256="07p9r358q3jxm8n7nypxmvpfnh61njivcwaplgzzxrlcbway6fq9"; depends=[data_table Rcpp]; }; intervals = derive2 { name="intervals"; version="0.15.2"; sha256="0mvwfwc03ifb30a3dzbmkv9adwqb8ajxhcw24d8xip8px063plhb"; depends=[]; }; intervcomp = derive2 { name="intervcomp"; version="0.1.2"; sha256="1l6x1fl84li6is3b92b96q3fbv0rpgqy2lvw9cbi2cq8nh9imnyx"; depends=[]; }; - inti = derive2 { name="inti"; version="0.5.7"; sha256="19b3f776aaldwiy7fpkgr92jnkajyz1fgci8s619qqq986jj7pah"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; + inti = derive2 { name="inti"; version="0.5.8"; sha256="1czzbf8lmhx7wh1skcv2fc2cizyrdr9hyjavl0cwicanq4jpvhmi"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; intkrige = derive2 { name="intkrige"; version="1.0.1"; sha256="1p3fn5nzn1iliy025187k590qrsw3z3d47p67gzwwd6h050yrl86"; depends=[gstat raster Rcpp RcppArmadillo Rdpack sp]; }; intmed = derive2 { name="intmed"; version="0.1.2"; sha256="0amcqzinj35yvb9nfy808bz098dqmnds13z335lgqm6sykriyjpl"; depends=[doParallel dplyr foreach MASS mice stringr tibble]; }; intrinsicDimension = derive2 { name="intrinsicDimension"; version="1.2.0"; sha256="0cka20ifxx9njnvp18bzhrvmh3cwjnxkc0a23qzi43dahc51ijbc"; depends=[yaImpute]; }; @@ -11007,7 +11064,7 @@ in with self; { invctr = derive2 { name="invctr"; version="0.2.0"; sha256="1sywjw078rc6nqiz1j77sd7c15nbjjpwqqni3363zzw5c3hgrpx5"; depends=[plyr rlang]; }; inventorize = derive2 { name="inventorize"; version="1.1.1"; sha256="0pbm9iw4v6wqr4qs5g2nfkgiaq75qdfcdicazy94fwwfvx5xbgbv"; depends=[dplyr ggplot2 magrittr plotly plyr tidyr]; }; inverseRegex = derive2 { name="inverseRegex"; version="0.1.1"; sha256="1ca6adv602mh6fgkjy4qvmradki3wp44iak27i1k4cp3fi9cm986"; depends=[]; }; - invertiforms = derive2 { name="invertiforms"; version="0.1.0"; sha256="131h5dlyj38bis2rk2ji3dpdd45iiavfwb4d6cf0gn8rr7ldkwgl"; depends=[glue Matrix sparseLRMatrix]; }; + invertiforms = derive2 { name="invertiforms"; version="0.1.1"; sha256="0n3ksfdryk0g6f60acxh4i9f5z6gi9bsbal95z9pcd1vgvyhr1xw"; depends=[glue Matrix sparseLRMatrix]; }; investr = derive2 { name="investr"; version="1.4.2"; sha256="12hrvi3gi3hwianjnzfir4771kbrfbcy35xmfksp0lxrfxvm61ra"; depends=[nlme]; }; invgamma = derive2 { name="invgamma"; version="1.1"; sha256="12ga2y4wc9bc5zz6vimvxwgjpsx3ys3209nq63gscbw559ydxa5a"; depends=[]; }; io = derive2 { name="io"; version="0.3.2"; sha256="1cyl8wvbngdrdkkckng1bs699rjp737j99kbd8r155fjj0370nx4"; depends=[filenamer stringr]; }; @@ -11017,12 +11074,13 @@ in with self; { iopsych = derive2 { name="iopsych"; version="0.90.1"; sha256="0adxwxnb1zdlld3icdggx7cq6cp8z4h1jf105485w322a8c6s9ik"; depends=[mco mvtnorm]; }; iosmooth = derive2 { name="iosmooth"; version="0.94"; sha256="06xgzhjgb6pznjzfli193q7kn8sh5jmqsssgymwj98bw7iwn4q3z"; depends=[]; }; iotables = derive2 { name="iotables"; version="0.9.1"; sha256="1xs6hfr1h8mpm2ksbrx7kjqi01rvgfczsnxmv70czwpsc3lbzrdf"; depends=[assertthat dplyr eurostat forcats glue kableExtra knitr lubridate magrittr plyr readxl rlang tibble tidyr tidyselect]; }; + iotarelr = derive2 { name="iotarelr"; version="0.1.2"; sha256="0dsbcjbval74xlcljjhl2lmr146kg8q3fwx9aw6y6spdfidj9cdc"; depends=[ggplot2 gridExtra Rcpp rlang]; }; iotools = derive2 { name="iotools"; version="0.3-2"; sha256="07q0z0kszm1xx5hfhisfliyrcsxd8dc5mx0a2bwwnv5l1xzmix17"; depends=[]; }; ip2location = derive2 { name="ip2location"; version="8.0.1"; sha256="0mf6ncckjjrq4dvd8pifz4izn4vqmsqq0pw36gm1zqzbyyvmqqya"; depends=[jsonlite reticulate stringr]; }; ip2proxy = derive2 { name="ip2proxy"; version="1.1.0"; sha256="1hs7n33cn2drqig0p2ns0bnyx2af58x2rslih3yj85xx0dn87qgp"; depends=[jsonlite reticulate stringr]; }; ipADMIXTURE = derive2 { name="ipADMIXTURE"; version="0.1.0"; sha256="1fl7nyxg7gakjdggdc311wf037zaxwpqsw3ax7liq1pvw6flb9h7"; depends=[ape treemap]; }; ipa = derive2 { name="ipa"; version="0.1.0"; sha256="029vz7pb37vnqm7x6h53p0y7z0nx2s36yklyfn9sz21gknsi983j"; depends=[stringi]; }; - ipaddress = derive2 { name="ipaddress"; version="0.5.5"; sha256="0p6w6qbrpv68akpggqml4krgnazj14jbcafhkv0vk8z3sqskhxk5"; depends=[AsioHeaders Rcpp rlang vctrs]; }; + ipaddress = derive2 { name="ipaddress"; version="0.5.6"; sha256="1hyb29mwg16xk1887kiz68vvw4jpipylyqis16siwiwlzd2yjfn2"; depends=[AsioHeaders Rcpp rlang vctrs]; }; ipc = derive2 { name="ipc"; version="0.1.3"; sha256="10h54j83l7khk1lkpdwn6hwaz31i3v6svg4q1lxzvr2aqdsj7hy0"; depends=[R6 shiny txtq]; }; ipcwswitch = derive2 { name="ipcwswitch"; version="1.0.4"; sha256="12z16c8sv1nhdv70kwx1a0wh588znkv5y5r0s9kcws0n3rjhzh9p"; depends=[survival]; }; ipdw = derive2 { name="ipdw"; version="1.0-0"; sha256="1xar3i4d5pmhcfqjfh54d3qpjglsmnpyidxk29jziy6hwc4rsnaa"; depends=[gdistance raster rgeos sp]; }; @@ -11033,7 +11091,7 @@ in with self; { ipft = derive2 { name="ipft"; version="0.7.2"; sha256="0jifmkwac5yfl110200ljm3pas3321j068af9xqzqs0av20m8hps"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; ipkg = derive2 { name="ipkg"; version="1.0.5"; sha256="0y1gqc61fqjai3vfsn0rdjd0r8g46ls2jvb97h6gfhdafgfxrq7f"; depends=[remotes]; }; iplots = derive2 { name="iplots"; version="1.1-8"; sha256="01s8a43s2spxgmp6px5dpd96p8f4sfp98nxmxk763hg2868rksx3"; depends=[png rJava]; }; - ipmr = derive2 { name="ipmr"; version="0.0.5"; sha256="14hls6cvdfgkc253514vjrfw049ms846llv4677zsi0nqjzgbqkz"; depends=[magrittr purrr Rcpp rlang]; }; + ipmr = derive2 { name="ipmr"; version="0.0.6"; sha256="1h4y0ayq9bnspr17y65fwpa157iylrf0y0iza1zwy4scrvs39aw5"; depends=[magrittr purrr Rcpp rlang]; }; ipr = derive2 { name="ipr"; version="0.1.0"; sha256="1db06r784c6jga0anp6p5b3k47yfhr84nzxyjn52pc9zkg3yifjm"; depends=[]; }; ipred = derive2 { name="ipred"; version="0.9-13"; sha256="162ckhqn24l0l5ih7qi2k3lxw5iprm1g5a34q1ik0b9wv5ia0s31"; depends=[class MASS nnet prodlim rpart survival]; }; iprior = derive2 { name="iprior"; version="0.7.3"; sha256="15qzqwikxy85fcd7psz363b5wb0kpi85icfyb47hbgdhln8fi2qb"; depends=[doSNOW foreach ggplot2 mvtnorm Rcpp RcppEigen reshape2 scales]; }; @@ -11041,7 +11099,7 @@ in with self; { ipsecr = derive2 { name="ipsecr"; version="1.3.0"; sha256="0rb2x91rq93kgk3pr6lmk0fsrs2x6w5zjh8vd66051wnz239aqbm"; depends=[BH MASS nlme Rcpp RcppArmadillo secr stringr]; }; ipsfs = derive2 { name="ipsfs"; version="1.0.0"; sha256="1cpa0m19nddpp852vyiqw0azx8idyaqv225akfyrych9y8kw9n4d"; depends=[]; }; iptools = derive2 { name="iptools"; version="0.7.2"; sha256="1jjzigv4rh5ds99z6lqqymfiwi4wzfiv3xpqaib10vrchbvlsrhr"; depends=[AsioHeaders BH Rcpp stringi triebeard]; }; - ipumsr = derive2 { name="ipumsr"; version="0.5.1"; sha256="05lm60362jrlyndh8rmn3kpagzpqvc3xjfwrn68g5pcnahp3cb5z"; depends=[dplyr haven hipread httr jsonlite purrr R6 readr rlang tibble tidyselect xml2 zeallot]; }; + ipumsr = derive2 { name="ipumsr"; version="0.5.2"; sha256="1zyd5yvasz8012hhwqihvbbsw8jc6si51gi8zzsqb4vvjwlp5ch3"; depends=[dplyr haven hipread httr jsonlite purrr R6 readr rlang tibble tidyselect xml2 zeallot]; }; ipwCoxCSV = derive2 { name="ipwCoxCSV"; version="1.0"; sha256="0avnvf4pnpxnik3iwwglpwkc8h0vsx9v6fxldkbvq7l9bphdbba1"; depends=[survival]; }; ipwErrorY = derive2 { name="ipwErrorY"; version="2.1"; sha256="14p22mwc120kdlf6r1hfx4kp7nqrz2nl2vpvy45j8rbrc571b6ka"; depends=[nleqslv]; }; iq = derive2 { name="iq"; version="1.9.6"; sha256="18myhc0ilh2ngj67xq0inx88dzmn6c2q10qyzfpxy3al4zzg98fz"; depends=[Rcpp RcppEigen]; }; @@ -11056,10 +11114,11 @@ in with self; { irrCAC = derive2 { name="irrCAC"; version="1.0"; sha256="1j9z8vz5zcl51a8qq6maf9sw0dqaknkrai7gp31mzag7b6vwms06"; depends=[]; }; irrICC = derive2 { name="irrICC"; version="1.0"; sha256="0vi5g97kbyhwxz242d1hpqf11izd3kmlzh3997v07md1llcsp6s3"; depends=[]; }; irrNA = derive2 { name="irrNA"; version="0.2.3"; sha256="1s50k0vygqh3zcvy5j6h5krv9gfiv8sakmnbf90hpkh0rlirgf88"; depends=[]; }; - irt = derive2 { name="irt"; version="0.2.5"; sha256="13cfmzr7bw5jbcwykvjli5lsnbcr7n8w6nljwsmnsa42fa7f2159"; depends=[Rcpp]; }; + irt = derive2 { name="irt"; version="0.2.7"; sha256="1qckf91pady8gbp0bdbskijyqmmv2d9icb6ihmf0d2r49f37q4fh"; depends=[Rcpp]; }; irtDemo = derive2 { name="irtDemo"; version="0.1.4"; sha256="0rpwryybnj7b4bxn0mn1m496y85s2fpqdd78lmdl6jg1ck4j4pb3"; depends=[fGarch shiny]; }; irtGUI = derive2 { name="irtGUI"; version="0.2"; sha256="1hyabm9wvld1b1gvcn02yyd8j1wrpfmpxkcj505az64lqj4p7yj0"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard WrightMap writexl]; }; irtoys = derive2 { name="irtoys"; version="0.2.2"; sha256="1qshz6czykgf53mq6xiswzv5xsjwrkrinpfkf1yavql4v08hs82b"; depends=[ltm sm]; }; + irtpwr = derive2 { name="irtpwr"; version="1.0.0"; sha256="009m14v1frwwqxi0vlvxk740ky34xj4k7pn4csl69yk429r8l9a2"; depends=[Deriv digest ggplot2 mirt spatstat_random]; }; irtrees = derive2 { name="irtrees"; version="1.0.0"; sha256="003gmnv2d0xsqd54chadkbd8c8kf8fwr4lza86k6qkfs7d3ifkjm"; depends=[DiagrammeR tidyr]; }; irtreliability = derive2 { name="irtreliability"; version="0.1-1"; sha256="15qs8bvgrwajj5kfd57rd34l1p2805ilyd7w60ngrqc14d6az9d2"; depends=[fastGHQuad ltm mirt]; }; isa2 = derive2 { name="isa2"; version="0.3.5"; sha256="17vm0906szhrh2k5x694vwcfijbzmd1v3axpszfybc0lgds437cv"; depends=[lattice]; }; @@ -11085,6 +11144,7 @@ in with self; { isogeochem = derive2 { name="isogeochem"; version="1.1.0"; sha256="0sypzabg1dqs3c0ph6h5qdjdn25hfvcsh3hhks60ylpnjn9ck3x0"; depends=[]; }; isokernel = derive2 { name="isokernel"; version="0.1.0"; sha256="04mrbq2822yhcq4q82xwm61a38zsk6w55jgjkp0xnardpv8a39pb"; depends=[Matrix RANN]; }; isoorbi = derive2 { name="isoorbi"; version="1.0.0"; sha256="1087k2xyfmbnwid787q0zypa788bixnmrjs3zm04gr5qhdbixc74"; depends=[dplyr magrittr readr rlang stringr tidyr]; }; + isopam = derive2 { name="isopam"; version="1.1.0"; sha256="0cj8gn5m7r1fs4riiw1d3cmpg7zy3dyfpcr40dy18zmp4kg6ff7m"; depends=[cluster future future_apply progressr proxy vegan]; }; isopat = derive2 { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; isotone = derive2 { name="isotone"; version="1.1-0"; sha256="0alk0cma5h3yn4w2nqcahprijsm89b0gby9najbngzi5vnxr6nvn"; depends=[nnls]; }; isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; @@ -11106,10 +11166,10 @@ in with self; { itertools = derive2 { name="itertools"; version="0.1-3"; sha256="1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn"; depends=[iterators]; }; itertools2 = derive2 { name="itertools2"; version="0.1.1"; sha256="0yra3x9ddvn5pp3jibm69205zazv81bz0cflw4mdvxpqadaf9f96"; depends=[iterators]; }; itp = derive2 { name="itp"; version="1.2.0"; sha256="0vh5rpl88v5b6s2vfv42ahaphlspiapx82xa74ynic4rmc2ffjis"; depends=[Rcpp]; }; - itraxR = derive2 { name="itraxR"; version="1.4"; sha256="0gybgzc37q1i2zdik1xjn1l6p98jx8r8k722fsgfb17pxj4l4bkf"; depends=[broom compositions dplyr ggcorrplot ggfortify ggplot2 janitor readr rlang stringr tibble tidyr tiff]; }; + itraxR = derive2 { name="itraxR"; version="1.8"; sha256="1fl843dwvn92i4h0ccdp4xn5jwkkhzng367mmrr1ilwa3bq6ziqr"; depends=[broom compositions dplyr ggcorrplot ggplot2 janitor munsellinterpol readr rlang stringr tibble tidyr tiff]; }; its_analysis = derive2 { name="its.analysis"; version="1.6.0"; sha256="1ig7yq59y5xl1z182bbvgx8vsqs9sb1xscf6zxqn1qmy9f0ggf7v"; depends=[boot car forecast ggplot2 plyr]; }; itsadug = derive2 { name="itsadug"; version="2.4.1"; sha256="1sdqs279qxr3993hw08xg7b54yq03jw1597cqn6cf24sh9vpw9m1"; depends=[mgcv plotfunctions]; }; - itscalledsoccer = derive2 { name="itscalledsoccer"; version="0.2.0"; sha256="1ckb7qwy90pr676imr25j89cfy9mvgdy8c7xhrznkvyp154y7wdi"; depends=[clisymbols crayon data_table dplyr glue httpcache httr jsonlite magrittr R6 rlang stringi tidyr]; }; + itscalledsoccer = derive2 { name="itscalledsoccer"; version="0.2.1"; sha256="03nic9v4bc2blncqp7hjgj7381bw7d8izp76kv7pdpvjvrwz1yxc"; depends=[clisymbols crayon data_table dplyr glue httpcache httr jsonlite magrittr R6 rlang stringi tidyr]; }; itsdm = derive2 { name="itsdm"; version="0.1.3"; sha256="0d8d2lnw0k01bd1q09qrbazk8a8zphmcf5madw4zaavi4ljqrg5f"; depends=[checkmate dplyr fastshap ggplot2 isotree ncdf4 outliertree patchwork raster rlang ROCit sf stars stringr tidyselect]; }; itsmr = derive2 { name="itsmr"; version="1.10"; sha256="1dr8n95rjbsfvw82v2r8rsahxa26f75icp9fn3hfr0d6g0xpkb69"; depends=[]; }; iva = derive2 { name="iva"; version="0.1.0"; sha256="0dchb263ygilxapwsw2gpl18z12wcjsz8zz5fg7h068hmcysa88g"; depends=[Formula ucminf]; }; @@ -11137,13 +11197,16 @@ in with self; { jack = derive2 { name="jack"; version="3.0.0"; sha256="191daxlkkz4494nvnqq6rdk8gkm6ial39cp63dfmkhhd021ay9ld"; depends=[DescTools gmp gmpoly JuliaConnectoR multicool mvp partitions Ryacas]; }; jackalope = derive2 { name="jackalope"; version="1.1.3"; sha256="1cslrl2cvcpi2kisb2plkz8c3wfxkbkf816nnyb06k4mv3gy4r5d"; depends=[ape R6 Rcpp RcppArmadillo RcppProgress Rhtslib zlibbioc]; }; jackknifeKME = derive2 { name="jackknifeKME"; version="1.2"; sha256="0c5shl6s46kz7a623gccqk2plrrf2g29nwr6vbny6009pq3jvzam"; depends=[imputeYn]; }; + jackknifeR = derive2 { name="jackknifeR"; version="0.1.1"; sha256="165df6yfkxlm2dy43fslhmh909sagbzzmdplvxa6zr3lk703z0ic"; depends=[]; }; jackstrap = derive2 { name="jackstrap"; version="0.1.0"; sha256="09y9pgb920lnbzlgm6j188q8lw1air83kx383a2f89zz7hhgg7jr"; depends=[Benchmarking doParallel dplyr fBasics foreach ggplot2 plyr reshape rlang scales tidyr]; }; + jackstraw = derive2 { name="jackstraw"; version="1.3.8"; sha256="04d0ribg8nbxazv92hmzzks2krsx024glfc90cm9dxz7if44cwc9"; depends=[cluster ClusterR corpcor irlba qvalue rsvd]; }; jacobi = derive2 { name="jacobi"; version="2.0.1"; sha256="14nd9bq09674jqbq20q8j7mphw68x2clnh7am1nwfghbjgv2l60c"; depends=[Carlson Rcpp rgl Rvcg]; }; jacpop = derive2 { name="jacpop"; version="0.6"; sha256="0kq6rn33civ2g6i5nwfqvcgmnn5k2dwmw60lkmz4ywm0y4xxlkai"; depends=[]; }; + jadeLizardOptions = derive2 { name="jadeLizardOptions"; version="1.0.1"; sha256="1919qm9b5nb6bjwbqhsnimgn5lhcrrhd90ndnsc9kj3z3khw9mkd"; depends=[dplyr ggplot2 magrittr tibble]; }; jaggR = derive2 { name="jaggR"; version="0.1.1"; sha256="0qd4kwcc8zcvg2p1njcv7z4y5ssg77zsylph5bcaqdjxq996q7rv"; depends=[formatR glue]; }; jagsUI = derive2 { name="jagsUI"; version="1.5.2"; sha256="1ig2v5k1xjggh694azr96cv80qapq8al7dhsjhvkx0dihp8kgad2"; depends=[coda rjags]; }; - jagshelper = derive2 { name="jagshelper"; version="0.1.8"; sha256="0kxgfjq58sx2vmxl12aarz74xqjsdqzbhf2rxnn2rqw09iy0wjgm"; depends=[jagsUI MASS]; }; - jagstargets = derive2 { name="jagstargets"; version="1.0.3"; sha256="0zq7jz2m4y8l7rd7gli2z4bg4q8v2p4yz0y9b3mgmbvqm6yr3xbf"; depends=[coda digest fst posterior purrr qs R2jags rjags rlang tarchetypes targets tibble withr]; }; + jagshelper = derive2 { name="jagshelper"; version="0.1.11"; sha256="0n8jzzqy4zpzqx461dkma5sg4hvdr15hz2xg1jy7dhf6gz4yljls"; depends=[jagsUI MASS]; }; + jagstargets = derive2 { name="jagstargets"; version="1.0.4"; sha256="08940ki6rfs014kkwsdsnvp45zd52j217n8y0z6mch8kpyawyial"; depends=[coda digest fst posterior purrr qs R2jags rjags rlang tarchetypes targets tibble withr]; }; jalcal = derive2 { name="jalcal"; version="0.1.0"; sha256="19smqrhvab8f2xb8pa8x6gmvr0r2lwvqisfahixs7aa8lxi708jw"; depends=[]; }; janeaustenr = derive2 { name="janeaustenr"; version="1.0.0"; sha256="1ap8p1lpbj2wz90mpf1vbyzhv2spzv03bi8lwzpsir2y77hjxhxl"; depends=[]; }; janitor = derive2 { name="janitor"; version="2.1.0"; sha256="09nqm957m2f54y2l30619b58x4i7gxwvr2lwg5kly5xy1ya1a1nn"; depends=[dplyr lifecycle lubridate magrittr purrr rlang snakecase stringi stringr tidyr tidyselect]; }; @@ -11157,19 +11220,18 @@ in with self; { jds_rmd = derive2 { name="jds.rmd"; version="0.3.1"; sha256="0mrldh031s5xirmpxr7dpjbz3ylcs7cavs3khhc0q5hhgq2zxydy"; depends=[bookdown rmarkdown]; }; jeek = derive2 { name="jeek"; version="1.1.1"; sha256="15n0k0i1wwp72g8zqrjmglnckab3p65q3rnpg6d6h8hjcpv82i7g"; depends=[igraph lpSolve pcaPP]; }; jenga = derive2 { name="jenga"; version="1.3.0"; sha256="0yq1nkaakzajjdk3w6hzikl6pwqx0546mcb1ik688b0l55vmwphc"; depends=[abind dplyr entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr Rfast scales tictoc]; }; - jetpack = derive2 { name="jetpack"; version="0.5.4"; sha256="0rhr313lfvy160ccjdpvyfacskhqcdvglj0dl0krs1r8vv4fcc6m"; depends=[desc docopt remotes renv]; }; + jetpack = derive2 { name="jetpack"; version="0.5.5"; sha256="0c2vvayci7jm1p97ccgb5nccrgvdyid4fgh12cab18xwrwx1hzxx"; depends=[desc docopt remotes renv]; }; jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; jfa = derive2 { name="jfa"; version="0.6.4"; sha256="1ksp4jrch9rhjh1bdscim92sj29j2xn3q4nrddlp2jmhvzaa0dw2"; depends=[extraDistr]; }; jgcricolors = derive2 { name="jgcricolors"; version="1.0.0"; sha256="1lg6yzqly5y2cf396b6rvfqplnfyz9v9ay2g4q9m110mng5ln96l"; depends=[ggplot2 knitr markdown RColorBrewer stringr]; }; - jgsbook = derive2 { name="jgsbook"; version="1.0"; sha256="0n03qfi101ln5bp1fzck2dik5zwscl7lq4yxngqnx6rwpfyx8mlk"; depends=[statip]; }; jiebaR = derive2 { name="jiebaR"; version="0.11"; sha256="08v64xwr9jp4vh88x7y935khh4cmj8rwsjaxfd2c67n0445qppmd"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; jinjar = derive2 { name="jinjar"; version="0.3.0"; sha256="10lilj98ppy3cpimn5pzsfkvm5chz4bw1rx3a3frgy56nmapnmsv"; depends=[cli cpp11 fs jsonlite rlang]; }; jipApprox = derive2 { name="jipApprox"; version="0.1.4"; sha256="18ga798iafkqvjmra1xw3fpqzhd7c9qjcvklsifs2s6p8czy06v7"; depends=[sampling]; }; - jjAnno = derive2 { name="jjAnno"; version="0.0.3"; sha256="1xqkkqzdalpzc9d9kibc7b2lfmpzxn84f9y8pl1wjs7ins4dhsck"; depends=[dplyr ggiraphExtra ggplot2 magick magrittr]; }; jjb = derive2 { name="jjb"; version="0.1.1"; sha256="0y9yvnzg6xngz1fvzl5jm4yb1pg6wrp3id0gysv214wcznf3gna9"; depends=[]; }; jlctree = derive2 { name="jlctree"; version="0.0.2"; sha256="0l8piz0m9iv9lbw35yx1ww0db0pv0qhbvkz4l36fwjsgnjlh8f6a"; depends=[lme4 rpart survival]; }; jlsm = derive2 { name="jlsm"; version="0.1.0"; sha256="01wmm7555v31kbmy6lcv9j0rr0cav5vsyhl09l7zh0qm6m3ddw7p"; depends=[boot ellipse expm lvm4net MASS Matrix matrixcalc mvtnorm network pROC]; }; + jmatrix = derive2 { name="jmatrix"; version="1.1"; sha256="1rww7fji1angch5az9cs599fii96189p9f92s8h4fpw54snz2hrw"; depends=[memuse Rcpp]; }; jmcm = derive2 { name="jmcm"; version="0.2.4"; sha256="1dpm94k2s2vx3dvd5rk7xrsq786phl0hq7xi9fjjxbr8qfmxhsck"; depends=[Formula Rcpp RcppArmadillo roptim]; }; jmdem = derive2 { name="jmdem"; version="1.0.1"; sha256="15zrxgd5fgi4wzp4s963pnwj3vkgxs4ygqrcpncy9b6j2cxrivdc"; depends=[statmod VGAM]; }; jmetrik = derive2 { name="jmetrik"; version="1.1"; sha256="1if1kxx8apgkbxpkjnlj2lpsfnyj2splsg1p3j5vxa7q6wx70f9j"; depends=[]; }; @@ -11178,7 +11240,7 @@ in with self; { jmv = derive2 { name="jmv"; version="2.3.4"; sha256="0mhai7kvc6fpsybpgj6adnbqsg3nlx16zfjdg6lxkhzjdv0s4gpm"; depends=[afex BayesFactor car dplyr emmeans GGally ggplot2 ggrepel ggridges GPArotation jmvcore lavaan magrittr MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; jmvReadWrite = derive2 { name="jmvReadWrite"; version="0.3.3"; sha256="0jyrilrh85x5qrkmwp7fvwa9mg8p769qcfnrlj3chv1q2ddfn69j"; depends=[rjson zip]; }; jmvconnect = derive2 { name="jmvconnect"; version="2.3.13"; sha256="0b5klfn4986haw3hhy3aarf88g08s1d46b8xrpxxqnwqw8yd7l88"; depends=[BH evaluate httr jmvcore rappdirs Rcpp]; }; - jmvcore = derive2 { name="jmvcore"; version="2.3.12"; sha256="1vmjf9sszskf767n92rzpg8lai2g1qgkncgn96j39mgck92vrnqn"; depends=[base64enc jsonlite R6 rlang stringi]; }; + jmvcore = derive2 { name="jmvcore"; version="2.3.19"; sha256="0cwchz7n50sxin65nc1k5bygci2yxp68yypmvq2a0fyf56r53gdg"; depends=[base64enc jsonlite R6 rlang stringi]; }; job = derive2 { name="job"; version="0.3.0"; sha256="0d7pw3q5lqlgmav1vx63y8l6gdav96656bg378wj001rx5gx052h"; depends=[digest rstudioapi]; }; jocre = derive2 { name="jocre"; version="0.3.3"; sha256="1i9n3r16pq6r4sy3fc1rxpil5ws8v2is0xdxafinvwr1hzkv1gz6"; depends=[boot KernSmooth plyr TSP]; }; joinXL = derive2 { name="joinXL"; version="1.0.1"; sha256="1l76bckjz5r1kdsh0s10i0gpca12rkfkp14346fn7avdcw73v23i"; depends=[data_table openxlsx R_utils rChoiceDialogs Rcpp readxl rJava timeDate timeSeries]; }; @@ -11197,10 +11259,10 @@ in with self; { jot = derive2 { name="jot"; version="0.0.4"; sha256="0pzlj9vcz7p3zcg2y32cir593x193cxswkc3y9d1xh58vamrgs60"; depends=[cli yaml]; }; journalabbr = derive2 { name="journalabbr"; version="0.4.0"; sha256="17b9igqnd9f9pp1wkpg9zvkmvzhhhnr4nrkgzpvlb0f9hihaj60s"; depends=[data_table httr purrr shiny stringi stringr tidytable]; }; joyn = derive2 { name="joyn"; version="0.1.4"; sha256="17x9rwcrqv7qx9w0cfyshjsij9cdl0fk13cfqbv0ibnc2nfycw87"; depends=[cli data_table glue rlang]; }; - jpeg = derive2 { name="jpeg"; version="0.1-9"; sha256="0wihj538wdnr71wdldym83qadb4kh68a6rkallwbh2f25r27b881"; depends=[]; }; + jpeg = derive2 { name="jpeg"; version="0.1-10"; sha256="1jkqj58hj33ar9wyl7c1cnj3h42icq7crmjk93n933q8qc4zdnf8"; depends=[]; }; jpgrid = derive2 { name="jpgrid"; version="0.2.0"; sha256="15a5gv3jw3r320rnvi5dpwp3psfq08v7im95jnwvk1b53pmabc87"; depends=[dplyr geosphere magrittr purrr rlang sf stars stringr tibble tidyr units vctrs]; }; jpmesh = derive2 { name="jpmesh"; version="2.1.0"; sha256="0q8adf582h92qwdwgh4dk53s8rixrrh96r8vzy6bwxvizqf0i3y8"; depends=[leaflet magrittr memoise miniUI purrr rlang sf shiny tibble units vctrs]; }; - jpstat = derive2 { name="jpstat"; version="0.2.1"; sha256="1z7j5q081gs0qh7x0dcb4mrqmvnzymhmrbw3m0xs85sx5v88akca"; depends=[dplyr httr lubridate navigatr pillar progress purrr rlang stringi stringr tibble tidyr vctrs]; }; + jpstat = derive2 { name="jpstat"; version="0.3.0"; sha256="1q1zc2micb62sdkar9w9pn3sb42lhhbr5pkfn4rg5iyl0iqpn5sa"; depends=[dplyr httr lifecycle navigatr pillar progress purrr rlang stickyr stringr tibble tidyr vctrs]; }; jqr = derive2 { name="jqr"; version="1.2.3"; sha256="1a91zcjxdilhqdyr2lipnwc35f90h0wyqlbg0vw9ay7sq6llxgs9"; depends=[lazyeval magrittr]; }; jquerylib = derive2 { name="jquerylib"; version="0.1.4"; sha256="04a40v4znpj98j7y6009d74a6g9dchj5rr3p08cgz9p3rlfw3g7h"; depends=[htmltools]; }; jrc = derive2 { name="jrc"; version="0.5.1"; sha256="0lg647nfijj6grlmwkasd6di5h6286dxmw1373k6n5gwym1g1l36"; depends=[httpuv jsonlite mime R_utils R6 stringi stringr]; }; @@ -11213,20 +11275,22 @@ in with self; { jshintr = derive2 { name="jshintr"; version="0.1.0"; sha256="08j28c2ab9fh6g7qp2vl8j5hz5kkikvl2id979kv92ach9vranyd"; depends=[htmltools htmlwidgets rstudioapi]; }; jskm = derive2 { name="jskm"; version="0.4.3"; sha256="04bm4haylhjj5wf09jmpznav7shnlnhag7kxl4yqp3z5572dvj1g"; depends=[ggplot2 gridExtra scales survey survival]; }; jsmodule = derive2 { name="jsmodule"; version="1.3.3"; sha256="1n7kl0jmk3dg2vj4fnl85had2flyz16hynwzyzkankn417m25n2z"; depends=[data_table DT epiDisplay geepack GGally ggplot2 ggpubr haven Hmisc jskm jstable labelled MatchIt maxstat officer pROC purrr RColorBrewer readr readxl rstudioapi rvg see shiny shinycustomloader shinyWidgets survey survIDINRI survival timeROC]; }; + json2aRgs = derive2 { name="json2aRgs"; version="0.3.0"; sha256="0n1kj1kll6x7ar00y32pf8z38z7z1bnj29nlv9dx068n4kmy89v7"; depends=[jsonlite yaml]; }; json64 = derive2 { name="json64"; version="0.1.3"; sha256="19q8qgf4wnd3np12ajy180klpjy0g2csw5micwb4sl7qfzl6wc7j"; depends=[jsonlite]; }; - jsonStrings = derive2 { name="jsonStrings"; version="2.1.0"; sha256="0agpkshnqijivvi042f2wkdy34g3z7849rp2p3z0y72bk6a5b2jg"; depends=[R6 Rcpp]; }; - jsonify = derive2 { name="jsonify"; version="1.2.1"; sha256="1kpv6whi6bggi0ij7krzfr0fly6c2j9y54fr5ahgcjp36amr34cj"; depends=[rapidjsonr Rcpp]; }; + jsonStrings = derive2 { name="jsonStrings"; version="2.1.1"; sha256="0936nhm6zx4la7i6fwigz0kvgf9dirz422vhrzjr45f37pyfvkxy"; depends=[R6 Rcpp]; }; + jsonify = derive2 { name="jsonify"; version="1.2.2"; sha256="0bxgyj5b1hnijq5315g050giixy4k5mjz2zdx8yil0igb5ifji9p"; depends=[rapidjsonr Rcpp]; }; jsonld = derive2 { name="jsonld"; version="2.2"; sha256="0bplz2s97wl9yp383jazykh5647iw6kbr1zanqai2s0sxp1xbwn8"; depends=[curl jsonlite V8]; }; - jsonlite = derive2 { name="jsonlite"; version="1.8.3"; sha256="1w685bwhvqxh8y3b4rmzmbbxsj0sqrdad4rni7dxbiqzd2piszy5"; depends=[]; }; + jsonlite = derive2 { name="jsonlite"; version="1.8.4"; sha256="0y0jzf74c3q1sghgarvwmrkvxs7yahywd342m8c0jsr28bhapskr"; depends=[]; }; jsonstat = derive2 { name="jsonstat"; version="0.0.2"; sha256="0p0d3snl1971p5ikrkmwqrjjh4fy0b89qk3rnd1dayfb0r80xnnj"; depends=[cli dplyr jsonlite rlang]; }; jsontools = derive2 { name="jsontools"; version="0.1.0"; sha256="13i1g8lmzgs7hd0xay4gm8z2myzbjzi73fwp9x4f4f9mywj7zl5s"; depends=[bit64 DBI glue jsonlite magrittr pillar purrr rlang RSQLite tibble tidyselect vctrs withr]; }; jsonvalidate = derive2 { name="jsonvalidate"; version="1.3.2"; sha256="0myvm93azl6mj60l8fp91qa3ln3nnwj4p48xli8k215sm6zhhv1b"; depends=[V8]; }; jstable = derive2 { name="jstable"; version="1.0.7"; sha256="1hs202z49aazsadr0jb67wk43i18y3h1aw0xflfmvirxjxr63xm8"; depends=[coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; jstor = derive2 { name="jstor"; version="0.3.10"; sha256="0k2y3h01yra8yns97j4yyxa1jmclrd6z5xxiv4m8da5q5cgkc970"; depends=[cli crayon dplyr furrr magrittr pryr purrr readr rlang stringr tibble tidyr xml2]; }; jti = derive2 { name="jti"; version="0.8.4"; sha256="0jxqv3xa9yyzizx1rhxjv65c8b253shridy57skrd5kya701n460"; depends=[igraph Rcpp RcppArmadillo sparta]; }; - jtools = derive2 { name="jtools"; version="2.2.0"; sha256="1aafnjmldg01c25psi47xnqrf5p7kjfcffjknghgw6dczjpn500f"; depends=[crayon generics ggplot2 magrittr pander pkgconfig rlang tibble]; }; + jtools = derive2 { name="jtools"; version="2.2.1"; sha256="1z44rdywbaks471x8z36v3c0ydchycgksgxj9m408bbncb79y3n3"; depends=[crayon generics ggplot2 magrittr pander pkgconfig rlang tibble]; }; jubilee = derive2 { name="jubilee"; version="0.3.3"; sha256="1j2y44pfx9z2k169lh42b4dnfrrnk8jqsjn3wz4l9iscr6r91lx7"; depends=[data_table dplyr readxl xts yaml zoo]; }; juicr = derive2 { name="juicr"; version="0.1"; sha256="0vkbgbagcgaxj6k62b033ik85jnkzvshg8dm9cz7vq4yjqj3icip"; depends=[RCurl XML]; }; + juicyjuice = derive2 { name="juicyjuice"; version="0.1.0"; sha256="0ap1nsyihlagc1yqvwr2x9s16kzb3c8azfi50mzv95275a5l3xb4"; depends=[V8]; }; junctions = derive2 { name="junctions"; version="2.0.3"; sha256="0lm3n8n9dfi9nsdazj74pd57kxm2kzrd1gxdzd0izzwgkjnsrsqc"; depends=[nloptr Rcpp RcppParallel tibble]; }; just_install = derive2 { name="just.install"; version="1.0.2"; sha256="1g82g4lhdk8mf1v4j47y2pgdrryz4175djx42kmg85vw7mlpvlcj"; depends=[dplyr remotes]; }; justifier = derive2 { name="justifier"; version="0.2.4"; sha256="0a9liqxsaf4y02x40bancz5vvqhjzy99gaknmfvw5ngzg0svy55r"; depends=[data_tree DiagrammeR DiagrammeRsvg purrr yaml yum]; }; @@ -11238,18 +11302,18 @@ in with self; { kableExtra = derive2 { name="kableExtra"; version="1.3.4"; sha256="1c5vzy95cbz36jwyssr927qicrayifinv861rvnmg4nghb1gl7q9"; depends=[digest glue htmltools knitr magrittr rmarkdown rstudioapi rvest scales stringr svglite viridisLite webshot xml2]; }; kader = derive2 { name="kader"; version="0.0.8"; sha256="15f2swgngw5rdjdsh5kd55wm2nivlfs8pv4mdn0b75qihwgg1zkk"; depends=[]; }; kaigiroku = derive2 { name="kaigiroku"; version="0.5"; sha256="11f9lxk4kx3d65i2xnbpw1ixcc9qgahqdirl42aiyph4hzah1fhh"; depends=[dplyr jsonlite R_utils tidyr]; }; - kairos = derive2 { name="kairos"; version="1.1.0"; sha256="16lpza2vl32vhprz4a30jhqm99gd4pcg2k12hngcd4vf50z8cmqy"; depends=[arkhe boot dimensio extraDistr ggplot2 Hmisc rlang]; }; + kairos = derive2 { name="kairos"; version="1.2.0"; sha256="1fivyh61wqkq77aicqc90pihrn2kwir4mpbcp5jl9sklcdmh3l3w"; depends=[arkhe dimensio extraDistr ggplot2 Hmisc rlang]; }; kalmanfilter = derive2 { name="kalmanfilter"; version="2.0.0"; sha256="1i55cdlm3f4qmykv4p5q62yiw4bhkq5nnzd7wfpzf1hbnjp94d87"; depends=[Rcpp RcppArmadillo]; }; kamila = derive2 { name="kamila"; version="0.1.2"; sha256="01rwalv2qigxl3j3jyhrdbxlarwf0xdc8xa6c42sgcl6qpna5vn7"; depends=[abind gtools KernSmooth plyr Rcpp]; }; - kangar00 = derive2 { name="kangar00"; version="1.4"; sha256="0cgyxvgk6bxvh77y9vl0p024dya9ffr9fhmwlcxbysbr4p3kyiaj"; depends=[bigmemory biomaRt CompQuadForm data_table igraph KEGGgraph lattice sqldf]; }; + kangar00 = derive2 { name="kangar00"; version="1.4.1"; sha256="0c3wrzk7k322xj0yzladxdhh2j91qm7m0dyqqqfsshfkh8d22m48"; depends=[bigmemory biomaRt CompQuadForm data_table igraph KEGGgraph lattice sqldf]; }; kantorovich = derive2 { name="kantorovich"; version="3.0.1"; sha256="140fmbwaxn968n75my9336svgk7jw5zdq2ah1lcnl2m7qhxkvdxk"; depends=[CVXR gmp lpSolve rcdd Rglpk slam]; }; kaos = derive2 { name="kaos"; version="0.1.2"; sha256="0hzzb8ldydl4g3cl1579q8jv835q4cdmn8agafp6qqdhwi1xxw8k"; depends=[ggplot2 reshape2]; }; kaphom = derive2 { name="kaphom"; version="0.3"; sha256="081drgckirc0wv2viyhhnabrlfzi0nkpq6pffw2rxfjyxdsyvnwa"; depends=[]; }; kappaSize = derive2 { name="kappaSize"; version="1.2"; sha256="0lrcyj85zcl73m6bhbzl6rkprrfpfwmm4amyjkg1xsasy5zlwk67"; depends=[]; }; - kappalab = derive2 { name="kappalab"; version="0.4-7"; sha256="16bwbwwqmq2w7vy8p3wg0y80wfgc8q5l1ly1mqh51xi240z1qmq0"; depends=[kernlab lpSolve quadprog]; }; + kappalab = derive2 { name="kappalab"; version="0.4-8"; sha256="1ybr3nci04f9j91hwb5rv6ahwy89rdicxx2b2bl8rm70pj0vaq4r"; depends=[kernlab lpSolve quadprog]; }; karaoke = derive2 { name="karaoke"; version="1.0"; sha256="1kx11lijdffhhh8prjgsamshgg2v29b2i129fjqi079waa335352"; depends=[seewave tuneR]; }; karel = derive2 { name="karel"; version="0.1.1"; sha256="0nvzvd8aq0sipcvn8agjjd2k1wykpgc99nrrk2cxrlvsjbpd2w52"; depends=[dplyr gganimate ggplot2 gifski magrittr purrr tidyr]; }; - katex = derive2 { name="katex"; version="1.4.0"; sha256="0kgz2qck90h9kaxvy40nii03ib02z757bmw8sgacik82hmj0fxx8"; depends=[V8]; }; + katex = derive2 { name="katex"; version="1.4.1"; sha256="18cziglz8qy1v9gfcjiixq2d3l3na5p51zrxpy3x8asjiddq13d3"; depends=[V8]; }; kayadata = derive2 { name="kayadata"; version="1.2.0"; sha256="0dpfgqhhdfgkpp06y49c8rs6q0cnx9yvz6qya7jhwkanh8zj8pvq"; depends=[dplyr forcats ggplot2 magrittr purrr scales stringr tidyr]; }; kazaam = derive2 { name="kazaam"; version="0.1-0"; sha256="0j7vysnmiv9sggcxdn3nrgfvyl52pza4kkjnsa0xlb3fzq9qpwlz"; depends=[pbdMPI]; }; kcopula = derive2 { name="kcopula"; version="0.1.0"; sha256="07ddrq4lxp8i6n7c7ac7x9mdg9gfmlh7bv3n34qalwv0a6fa061w"; depends=[pracma]; }; @@ -11276,12 +11340,12 @@ in with self; { kernelPSI = derive2 { name="kernelPSI"; version="1.1.1"; sha256="1gnp3ixqmijy6xanlc4l8255biwxmlfyhd3y68arry9rzfjkmxpz"; depends=[CompQuadForm kernlab lmtest pracma Rcpp RcppArmadillo]; }; kernelPhil = derive2 { name="kernelPhil"; version="0.1"; sha256="0pzsknb0ibm3v0ibfaklb4g2mx7zrva4m29356cirwd29nmd8bqw"; depends=[benchmarkme directlabels dplyr ggplot2 gridExtra Hmisc pbapply reshape2 rgdal wordspace]; }; kernelboot = derive2 { name="kernelboot"; version="0.1.9"; sha256="1xqkkgy2b5x9ykwnk0pfhy7cmghzg5aivw6514cx9g0yvdprjmyy"; depends=[future future_apply parallelly Rcpp]; }; - kernelshap = derive2 { name="kernelshap"; version="0.3.0"; sha256="04y4z8zqafpy0a0191avx10rr7yvbdi748cgb86kabgzn5yzvhm6"; depends=[doRNG foreach MASS]; }; + kernelshap = derive2 { name="kernelshap"; version="0.3.1"; sha256="0y3cypdllmm9s4s3nca58962laxsd73zvy4iz9mbvgdpqwfxzk9h"; depends=[doRNG foreach MASS]; }; kernhaz = derive2 { name="kernhaz"; version="0.1.0"; sha256="1cxwjnfyhxfjdbhs21airycs704jic21pdpsbxsx37wkl11cxpai"; depends=[doParallel foreach GA rgl]; }; kernlab = derive2 { name="kernlab"; version="0.9-31"; sha256="12i7ffc1aacyy7bpjc0w60wwivn88wri8jz43h77irn5q5jwcnbk"; depends=[]; }; kernplus = derive2 { name="kernplus"; version="0.1.2"; sha256="0z5zpj89nw7cdphg6frmjwqjxsl6g95xsa8zgsxmw2q75wwj1saz"; depends=[circular KernSmooth mixtools]; }; kernscr = derive2 { name="kernscr"; version="1.0.5"; sha256="1kcj710q8jbc34g6fcv2nk07hpsb81mfx8hvivgxq8x58028gjzs"; depends=[MASS mvtnorm]; }; - kernstadapt = derive2 { name="kernstadapt"; version="0.0.1"; sha256="1b5gc2l1yf142pkw3bd5rnnvynwmnh90lqfpra9n4sbs9x9zmsci"; depends=[misc3d sparr spatstat_core spatstat_geom spatstat_random spatstat_utils]; }; + kernstadapt = derive2 { name="kernstadapt"; version="0.0.2"; sha256="0hbzc0xqlgs3kbblm247hkaic7s9a5slz22slh5dz9ddgfdy1z21"; depends=[misc3d sparr spatstat_explore spatstat_geom spatstat_random spatstat_utils]; }; kesernetwork = derive2 { name="kesernetwork"; version="0.1.0"; sha256="0q42zry3qgg38aas0cxy7lwpj9mj45crcbs353d1d1is0w1avh09"; depends=[config data_table dplyr DT ggplot2 golem htmltools plotly reactable rintrojs rlang shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus shinyhelper shinyWidgets stringr visNetwork yaml]; }; keyATM = derive2 { name="keyATM"; version="0.4.1"; sha256="0p6miqzmfm79j6j2yvgw6mwi51ad41pg0dgqz7zn7picwpya3h2p"; depends=[dplyr fastmap future_apply ggplot2 ggrepel magrittr MASS Matrix matrixNormal pgdraw purrr quanteda Rcpp RcppEigen RcppProgress rlang stringr tibble tidyr]; }; keyToEnglish = derive2 { name="keyToEnglish"; version="0.2.1"; sha256="1wzn93gp1v6y8qh9kypydqadnf6fc7xzjili77b7j402hvb0a8zg"; depends=[jsonlite openssl stringr]; }; @@ -11294,6 +11358,7 @@ in with self; { kfa = derive2 { name="kfa"; version="0.2.1"; sha256="11v0w1j8vispzbrwvsjig83bhrzbdvv13li7ibzyi2n7d1bcrji2"; depends=[caret doParallel flextable foreach GPArotation knitr lavaan officer rmarkdown semPlot semTools simstandard]; }; kfda = derive2 { name="kfda"; version="1.0.0"; sha256="0861hzry55gj8ykdd8cwil1wb7234pkmipp4v1749fpmzggq1xgi"; depends=[kernlab MASS]; }; kfigr = derive2 { name="kfigr"; version="1.2.1"; sha256="0kys4j2n2n1v918v877798m34q431fpz0p0s6gxnfqnn26z2hy14"; depends=[knitr]; }; + kfino = derive2 { name="kfino"; version="1.0.0"; sha256="14gpc72nin96g2sqzbj7z9ca2gs3kjl2k0yg1zfdrv8fgjsn9s6i"; depends=[dplyr ggplot2]; }; kgc = derive2 { name="kgc"; version="1.0.0.2"; sha256="14zbcimnglh5jj07dcaxp1dfjaz8syswy29nf8z39qmslv1hg9kk"; depends=[plyr shiny shinythemes]; }; kgp = derive2 { name="kgp"; version="1.1.0"; sha256="0w5c507s7k7al0dc68iv8hjkz2r1zc5kzg7pm5nk7gq7gixpzpxp"; depends=[]; }; kgrams = derive2 { name="kgrams"; version="0.1.2"; sha256="0m1cw55lr0bl83p379wh3103d1rw9933lvf457kvxy56r1164l2h"; depends=[Rcpp RcppProgress Rdpack rlang]; }; @@ -11326,7 +11391,7 @@ in with self; { klsh = derive2 { name="klsh"; version="0.1.0"; sha256="1r354fd5da6mp7v3048ii09hnghhfwdg6pvmx2ib0cr88ql431sy"; depends=[blink plyr Rcpp SnowballC stringi]; }; klustR = derive2 { name="klustR"; version="0.1.0"; sha256="1g2q6h3cbm8v3gqz0f6v8bl5na9972k38d94czjfxmx4cv7wfgx8"; depends=[htmlwidgets jsonlite]; }; km_ci = derive2 { name="km.ci"; version="0.5-6"; sha256="18sc9vhbdgks8lhk2nfxkkayh8j4j227hl63fm5p04f7z4wm6wc1"; depends=[survival]; }; - kmc = derive2 { name="kmc"; version="0.2-4"; sha256="0y8bdgdxsz53fiqc2yr39agndxs4zxj7mmplj273map9k0slnnqk"; depends=[emplik Rcpp rootSolve]; }; + kmc = derive2 { name="kmc"; version="0.4-2"; sha256="0rnrwqsmxcmf4sjd9p2xz7w12lv58wmy2p349s0x4b34b5arf75d"; depends=[emplik Rcpp rootSolve]; }; kmed = derive2 { name="kmed"; version="0.4.2"; sha256="1pamwl28g6gc84x7sw9czqj8dpraq5pd3hdrf5m3yziwzkfxawnc"; depends=[ggplot2]; }; kmer = derive2 { name="kmer"; version="1.1.2"; sha256="0jimn9r0abglwxdl1zqz0lxa99cmj6haydkxjzqfbpx9by80wnww"; depends=[openssl phylogram Rcpp]; }; kmi = derive2 { name="kmi"; version="0.5.5"; sha256="1j6fyi004fl97l569sn05pb7bmc2jx5hi0blfd896qi309s9qkd8"; depends=[mitools survival]; }; @@ -11337,7 +11402,7 @@ in with self; { kmscv = derive2 { name="kmscv"; version="0.1.0"; sha256="053608dks4q8171wrm6izh4pf0glbq6zpw30i9yq36f5azgy59sk"; depends=[dplyr parsnip purrr rsample tibble]; }; knitLatex = derive2 { name="knitLatex"; version="0.9.0"; sha256="1igacc2sx8897wmnhh8kngd0fq6zqbi30chy5c8jw60zc38mi3wi"; depends=[knitr]; }; knitcitations = derive2 { name="knitcitations"; version="1.0.12"; sha256="1c7pl8jh61pv0brqanmyfy6s0ipxn312b2hjypcsjaph6b8mhj2q"; depends=[digest httr RefManageR]; }; - knitr = derive2 { name="knitr"; version="1.40"; sha256="1g1mhnkyxd2sv6p1l6iph9dnmpbwxhah78xx4kq543ks6vzrb3wv"; depends=[evaluate highr stringr xfun yaml]; }; + knitr = derive2 { name="knitr"; version="1.41"; sha256="1izv1m56ngc20wx4da9mmr5ll6ah14ka8dqn9i3pd7ah70lmya81"; depends=[evaluate highr stringr xfun yaml]; }; knitrBootstrap = derive2 { name="knitrBootstrap"; version="1.0.2"; sha256="1aj60j7f0gcs120fdrnfbnb7vk7lfn1phil0mghg6a5zldz4cqs3"; depends=[knitr markdown rmarkdown]; }; knitrProgressBar = derive2 { name="knitrProgressBar"; version="1.1.0"; sha256="18v5jrscfrin3mcs63bpj0q1drxk3zkhlbw93sqh0qrq04d4x02v"; depends=[R_oo R6]; }; knitrdata = derive2 { name="knitrdata"; version="0.6.1"; sha256="1am79r4rkrw7vjmyzc0cq4p52l2ypdw99rfhrvdsaq11yllx08mx"; depends=[knitr xfun]; }; @@ -11365,7 +11430,7 @@ in with self; { kriging = derive2 { name="kriging"; version="1.2"; sha256="1s8cvc88g0wldr40hsv00145bym071bmp8klr0pbmvx0gfrqs8y8"; depends=[]; }; krippendorffsalpha = derive2 { name="krippendorffsalpha"; version="2.0"; sha256="0zzhpdmmaiaqrg1xi9jg6lzrhzpav8wyrc8z38rf8x6kxmr2bx3m"; depends=[]; }; krm = derive2 { name="krm"; version="2022.10-17"; sha256="142scj7cgg7sv0g17mivpgzk3h8jczf40h1padixfgx3204fj4xa"; depends=[kyotil]; }; - ks = derive2 { name="ks"; version="1.13.5"; sha256="05bqrjkbx2kn5aax0hy3xd6pf7nxka9bm1sp8ll1cc2gf1nx1i6i"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm plot3D pracma]; }; + ks = derive2 { name="ks"; version="1.14.0"; sha256="14a3pcxxcsfkqz5j6n2wlxkp0gsdp5mzdq7ipcjb65q2gdmwbf9d"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm plot3D pracma]; }; ksNN = derive2 { name="ksNN"; version="0.1.2"; sha256="06x471hck95xqy7rbh53ibhzh6kfjra7y9ipqdj2rqdkmfdj72q8"; depends=[Rcpp]; }; kselection = derive2 { name="kselection"; version="0.2.1"; sha256="03ax8b63fkq4sfsb9zvh2hk4g9nmd8wh5lla26wb7lan4s197dz6"; depends=[]; }; ksharp = derive2 { name="ksharp"; version="0.1.0.1"; sha256="1dnkj838y8c1b53mlljhjqs3nd864i9xcqsv9n4fw28b4br9m570"; depends=[]; }; @@ -11376,7 +11441,7 @@ in with self; { kstMatrix = derive2 { name="kstMatrix"; version="0.1-4"; sha256="0iy4dnl07pbgsv3343gh0szsab1kls2m5cskha08dchz0vqwpwf6"; depends=[igraph]; }; ktaucenters = derive2 { name="ktaucenters"; version="0.1.0"; sha256="15ddjr4c90b5hc4977gk35zb2kswrcvai3xighy7qj6g9lgiszgf"; depends=[dbscan dplyr GSE MASS]; }; ktsolve = derive2 { name="ktsolve"; version="1.3"; sha256="0brxqb60m1lyqhsmds1c3c6cmbcxlzk2nwvi0fhkc8ziwzlfmd09"; depends=[BB nleqslv]; }; - ktweedie = derive2 { name="ktweedie"; version="1.0.0"; sha256="1yr9rh2r7280kc78vq722vzp0n9mgfrczrhcgmzbdkcfvq1ivgj9"; depends=[]; }; + ktweedie = derive2 { name="ktweedie"; version="1.0.1"; sha256="1q946qdsbs7cjzfl97npi1lyqwrwxc72w4wv602faj74x33n0hjp"; depends=[]; }; kuiper_2samp = derive2 { name="kuiper.2samp"; version="1.0"; sha256="0gcgayh7qdic9zprdvs6r8qvpqs467zrm0qzp2acb7alcp01jhpi"; depends=[]; }; kutils = derive2 { name="kutils"; version="1.70"; sha256="06jk66wbq3jmdf2jdhqns6r3yk36l2x7c907x977zv80sqxa1l37"; depends=[foreign openxlsx plyr RUnit xtable]; }; kvh = derive2 { name="kvh"; version="1.4.2"; sha256="0lx7p2rgvcjgg99chcan0qb9hafx226sqvdb1g1xpkdwvzbyxci8"; depends=[Rcpp]; }; @@ -11405,7 +11470,7 @@ in with self; { lacrmr = derive2 { name="lacrmr"; version="1.0.5"; sha256="1lkn9hynqviz50h9k69wir4ajpymkdm1cfyg7hankjwnkypjp8rv"; depends=[dplyr httr janitor jsonlite magrittr sjmisc stringr]; }; lactater = derive2 { name="lactater"; version="0.1.1"; sha256="1bxdbksm1706fk2d7qhfcx4ns4775rayxvh2lxw3rpq3xlyb0prj"; depends=[broom dplyr forcats ggplot2 ggtext lubridate magrittr minpack_lm patchwork pracma rlang segmented stringr tidyr]; }; lactcurves = derive2 { name="lactcurves"; version="1.1.0"; sha256="1ksllpgz519gzrs8gwfgg7743vj3j7ikmbwgisdjs77sdxxl7xyz"; depends=[orthopolynom polynom]; }; - lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.1-3"; sha256="0rf74mxylg9j5apcxk40wyfbwgsjwh322kc6wxbqxm4rgscs6shw"; depends=[RcppRoll spatstat spatstat_core spatstat_geom spatstat_random]; }; + lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.1-4"; sha256="0w0xlc4xxy7yzscxvk3ls9pv1vw5ddx1zvx02pzvm4gc9mrfz2qr"; depends=[RcppRoll spatstat spatstat_explore spatstat_geom spatstat_random]; }; laeken = derive2 { name="laeken"; version="0.5.2"; sha256="1p3ccbaydlr52p8qmgmm2l6kryvq6jjjx7mqn2vv0gpjaxqhyy92"; depends=[boot MASS]; }; lagged = derive2 { name="lagged"; version="0.3.2"; sha256="1ss69jdmfz2al131mvhflaa4hcg71a0balpnc8vkf0f9svhkcs52"; depends=[]; }; lagsarlmtree = derive2 { name="lagsarlmtree"; version="1.0-1"; sha256="1v3a580scxb1v5na3ab3ax9qlzbnay7nhm3ln5l8f9zgsqrg5lyh"; depends=[Formula partykit spatialreg]; }; @@ -11422,7 +11487,7 @@ in with self; { landsat = derive2 { name="landsat"; version="1.1.0"; sha256="15ymmwhkgw0lqyy2sryss3nsmkrjf4cc0bzlsr41vh5c2636srfd"; depends=[lmodel2 mgcv rgdal sp]; }; landsat8 = derive2 { name="landsat8"; version="0.1-10"; sha256="169b5ka98ka9chbmksz6syaygc9wgl8i2gz1h2xkxj3lk9jcg01r"; depends=[rgdal sp]; }; landscapeR = derive2 { name="landscapeR"; version="1.2"; sha256="1zm5mj861ycbc2m28yjqnkifx8grc4l718mf8r422m78jfakvcjy"; depends=[raster Rcpp]; }; - landscapemetrics = derive2 { name="landscapemetrics"; version="1.5.4"; sha256="1qsm0h6lcg4a7s6g1am305rcxbrrf2hb6ypd29g5k7kj80fwg1rl"; depends=[cli ggplot2 raster Rcpp RcppArmadillo sp tibble]; }; + landscapemetrics = derive2 { name="landscapemetrics"; version="1.5.5"; sha256="1bk7zjmby5blpi9i51dz2ry6zjz4zm8frl61l27qw12dkhhyiyaj"; depends=[cli ggplot2 raster Rcpp RcppArmadillo sp tibble]; }; landscapetools = derive2 { name="landscapetools"; version="0.5.0"; sha256="11zp6r414nkj8vhsbryzhkxmpal2bva8msaxf1v69xax70ilxyf1"; depends=[ggplot2 raster Rcpp tibble]; }; landsepi = derive2 { name="landsepi"; version="1.2.2"; sha256="0pv2avabcs3kqygc6r3ggs368la0z0snfilp4q1jd46hww7ag9dj"; depends=[DBI deSolve doParallel fields foreach Matrix mvtnorm Rcpp RSQLite sf sp splancs testthat]; }; langevitour = derive2 { name="langevitour"; version="0.5"; sha256="0p7k159njgrfvw8adkzm6zma8b6ja2j9wwicrlywcqlbkwhbinbi"; depends=[assertthat htmlwidgets RANN]; }; @@ -11438,15 +11503,15 @@ in with self; { lassopv = derive2 { name="lassopv"; version="0.2.0"; sha256="0yawnjw063jypk3riy9xab9cmliv6c9dnabi18670khd3gzb2r9z"; depends=[lars]; }; lassoshooting = derive2 { name="lassoshooting"; version="0.1.5-1.1"; sha256="1hc05irjwcw54hdrdbwsxfr5b0qq7dysvybzm04jyixqs5b2m8wx"; depends=[]; }; latdiag = derive2 { name="latdiag"; version="0.3"; sha256="13wk8vhiwr9drcx5f4wlgbin6hc83zv54yr4h3qhjagm3hxcxbw0"; depends=[Rdpack]; }; - latentFactoR = derive2 { name="latentFactoR"; version="0.0.3"; sha256="0bm0avimfdhf9lgm4v5vrjbn7833klfp6166g6r8kmyvmn6gigqc"; depends=[BBmisc EGAnet fspe googledrive ineq mlr mvtnorm psych qgraph rstudioapi xgboost]; }; + latentFactoR = derive2 { name="latentFactoR"; version="0.0.4"; sha256="0kgzgympcfp6l4jysccrlxrbmqasz1v95wkmfsw8qgi7dzfsgywc"; depends=[BBmisc EGAnet fspe googledrive ineq Matrix mlr mvtnorm psych qgraph rstudioapi xgboost]; }; latentcor = derive2 { name="latentcor"; version="2.0.1"; sha256="0c8ygjdqxb9zs6b42ncqh5va80vxamdphja18x8dazygynmcgjr0"; depends=[doFuture doRNG fMultivar foreach future geometry ggplot2 heatmaply MASS Matrix microbenchmark mnormt pcaPP plotly]; }; latentgraph = derive2 { name="latentgraph"; version="1.1"; sha256="11h7nrd81licvdikiwwfkz4x9i7drz09w5ns672b7fw0pj4qqgsr"; depends=[glmnet MASS pracma Rcpp RcppArmadillo]; }; latentnet = derive2 { name="latentnet"; version="2.10.6"; sha256="0zkh75cvsiprxfbrzyqi72wvsljxzsifcd71kyrr2m761v3sqm16"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; later = derive2 { name="later"; version="1.3.0"; sha256="0acqg29hcm2iq1418b54np7zb5pnr3xzrwc3ijv2pz9wra10ix88"; depends=[Rcpp rlang]; }; - latex2exp = derive2 { name="latex2exp"; version="0.9.5"; sha256="153br3xflvnnxqhkhm1wgwb2664bw08alhslgdcgjdk73clafhla"; depends=[magrittr stringr]; }; + latex2exp = derive2 { name="latex2exp"; version="0.9.6"; sha256="1jp0l0hi5kv4yh28qg2yj2z5fj33gnfvdz2g2v4ibn516fj2d636"; depends=[magrittr stringr]; }; latexdiffr = derive2 { name="latexdiffr"; version="0.1.0"; sha256="021lhswy8nik2h1951h1affg8x5lchsa2amyx7fwrajp4bgq72yk"; depends=[fs rprojroot]; }; latexpdf = derive2 { name="latexpdf"; version="0.1.7"; sha256="0n0hzr9jkg13kn56jcghcg4a6y8x0c3jffcvxv621azd9ldljgfl"; depends=[]; }; - latrend = derive2 { name="latrend"; version="1.4.3"; sha256="1qqh2igwag57mm42nazszvlp5d4wddgaxmv1mh35jvrv0qwhc75j"; depends=[assertthat data_table foreach magrittr matrixStats R_utils Rdpack rlang rmarkdown]; }; + latrend = derive2 { name="latrend"; version="1.5.0"; sha256="0dh1l1fax7s46z6nh4srqnyhj881rb6mh1cjmcd5cy6xmv95wps9"; depends=[assertthat data_table foreach magrittr matrixStats R_utils Rdpack rlang rmarkdown]; }; latte = derive2 { name="latte"; version="0.2.1"; sha256="1dcwxxj3yran5a3a8vvdfmx4ap69ql2jncxvmci4p4vcw4ki9j9g"; depends=[dplyr ggplot2 glue magrittr memoise mpoly stringr usethis]; }; lattice = derive2 { name="lattice"; version="0.20-45"; sha256="1b87fmyjzbg854vpi03my1p25n3d0bchhwsdm2frblxppn98sf12"; depends=[]; }; latticeDensity = derive2 { name="latticeDensity"; version="1.2.6"; sha256="0l9ypdpy09nnmanj2gvaxzj79s8d9iqwy6rv0rig5fwbqv1y6135"; depends=[sf sp spam spatialreg spatstat spatstat_geom spdep splancs]; }; @@ -11464,6 +11529,7 @@ in with self; { layer = derive2 { name="layer"; version="0.0.1"; sha256="0mmijkk4ppbmhlp6ah88a9v3iwdd9j6yw7ff8kk7p1iw63qkiyxi"; depends=[dplyr ggnewscale ggplot2 raster scico sf stars]; }; lazy = derive2 { name="lazy"; version="1.2-18"; sha256="02phj1l92dh5qmcl9i8scxgj4v21knbfrwwixq74bgyzwb51ni4r"; depends=[]; }; lazyData = derive2 { name="lazyData"; version="1.1.0"; sha256="0mbmmx6dh8ph4lrx1b4gxbwz3jwxv4nqi0xvfzpzrm3bwbsjc634"; depends=[]; }; + lazyNumbers = derive2 { name="lazyNumbers"; version="1.2.1"; sha256="0dc0j79cv7j3y04mpb2pp3qrjwhiv74rypl9yplwyr36z6fgl00l"; depends=[BH Rcpp RcppCGAL RcppEigen]; }; lazyWeave = derive2 { name="lazyWeave"; version="3.0.2"; sha256="1a7l0rgkp3xq2s6bikciq778fwyr282baa6jk9ip4a71s931p2ag"; depends=[Hmisc labelVector]; }; lazyarray = derive2 { name="lazyarray"; version="1.1.0"; sha256="1bj1a8ab2479cl3d15h9f1fr1hh5d1p3sxpq8y84yzw0rrsxcldd"; depends=[fstcore R6 Rcpp yaml]; }; lazybar = derive2 { name="lazybar"; version="0.1.0"; sha256="1hv9ciznbxv7xnaijfjqisq3lx8nd4vkdkj9clxpdsspi3inlf53"; depends=[R6]; }; @@ -11530,14 +11596,13 @@ in with self; { learnPopGen = derive2 { name="learnPopGen"; version="1.0.4"; sha256="04wxina3n2bspxdp3d4bgqrwyxqxx46pfp8zgzr3rsj89ml8if9l"; depends=[gtools phytools]; }; learningr = derive2 { name="learningr"; version="0.29.1"; sha256="0z3rs7y9yd81f14sbk3dwq1ifr4vca2s3kl1gnkqlns3dycgyp08"; depends=[plyr]; }; learningtower = derive2 { name="learningtower"; version="1.0.0"; sha256="1q1k7wlklnxbb2yw3l96l7ha73vj3l3bnd4wlh2avmknqk2d8xcq"; depends=[dplyr tibble]; }; - learnr = derive2 { name="learnr"; version="0.11.1"; sha256="1p3943hv3ybmbcyfbxidd55dripi0570pf5l51hwz9r3635cx3zs"; depends=[checkmate curl digest ellipsis evaluate htmltools htmlwidgets jsonlite knitr lifecycle markdown promises rappdirs renv rlang rmarkdown rprojroot shiny withr]; }; + learnr = derive2 { name="learnr"; version="0.11.2"; sha256="1w8lcghnqvmggfp90hdpcjflvnxyp5shfk48vq5s4kci8414dm6j"; depends=[checkmate curl digest ellipsis evaluate htmltools htmlwidgets jsonlite knitr lifecycle markdown promises rappdirs renv rlang rmarkdown rprojroot shiny withr]; }; learnrbook = derive2 { name="learnrbook"; version="1.0.2"; sha256="13jd5j597pv3ainy6xx7ra402ymrh25hgfjzq0csq6d86n5fz3aj"; depends=[]; }; leastcostpath = derive2 { name="leastcostpath"; version="1.8.7"; sha256="0ivj15g3npwm0wpz6xaa8dj1am9diyvhyhnki8a3qfwsa7qv2n53"; depends=[gdistance gstat Matrix pbapply raster rgdal rgeos sp]; }; ledger = derive2 { name="ledger"; version="2.0.9"; sha256="0ynr1g7vfkabl78zjnshyxixk45g28bi9h1p4zjfl83009yhqjwx"; depends=[dplyr rlang stringr tibble tidyr tidyselect]; }; leem = derive2 { name="leem"; version="0.1.0"; sha256="1sm9v3m95fbg3apvv3jjf47qxn8v6ipdsm1103dqk4zngmsz4xia"; depends=[tkrplot]; }; leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; }; lefko3 = derive2 { name="lefko3"; version="5.5.0"; sha256="0zgd4d9zhjwhwm1z18xjk6qmfbknnxqkbxz48ml6xgabgk3h263l"; depends=[BH glmmTMB lme4 MASS MuMIn pscl Rcpp RcppArmadillo SparseM VGAM]; }; - legco = derive2 { name="legco"; version="0.1.4"; sha256="0fd1d2zf510lyrwclsy57d8lgqprk6p8c6ghxglgm6gbx9d2yrgg"; depends=[dplyr httr jsonlite]; }; legion = derive2 { name="legion"; version="0.1.1"; sha256="11gh281hf3nqzd3lbiqdp7y2qbpb933p92ix92hyg3rqai1fd0hb"; depends=[generics greybox nloptr Rcpp RcppArmadillo smooth zoo]; }; legislatoR = derive2 { name="legislatoR"; version="1.0"; sha256="1553hpb2cmv3hw6v4c7qwgg8n18jwx101yaqnmaaiv8gfyh6j43m"; depends=[curl dplyr]; }; legocolors = derive2 { name="legocolors"; version="0.3.1"; sha256="0ds9c2x0x590yk7mrjm4hh7k72p51slssg7jlprd71mw6hry91ma"; depends=[]; }; @@ -11547,14 +11612,14 @@ in with self; { leidenbase = derive2 { name="leidenbase"; version="0.1.12"; sha256="15qkvm3pbxlhf8c8732m7a2jfw044ks3gd3s6jg50cfmnn7h7rzq"; depends=[igraph]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; lemna = derive2 { name="lemna"; version="1.0.0"; sha256="1dm6kcbjkh12c7aa0kmygwj5vv61gmpmh06j0jsg0h7ys8hrdhjq"; depends=[deSolve ggplot2 gridExtra]; }; - lemon = derive2 { name="lemon"; version="0.4.5"; sha256="1y3ljidhqdakxlya2npj2w0az820g8kw6gl1cfm4f0cxvzgd1ly4"; depends=[ggplot2 gridExtra gtable knitr lattice plyr rlang scales]; }; + lemon = derive2 { name="lemon"; version="0.4.6"; sha256="0v1kbyk64yzsk92h6yq03kp9alc9632qprznsws61r8firiskim5"; depends=[ggplot2 gridExtra gtable knitr lattice plyr scales]; }; lenses = derive2 { name="lenses"; version="0.0.3"; sha256="08akwzlc5gk2rxbh9xp67n5ahdcld60932ascczjv0accrkxizhk"; depends=[magrittr rlang tidyselect]; }; leontief = derive2 { name="leontief"; version="0.2"; sha256="1gy23047c6gci9m83yrb662d5685x1kky6m94w68swms59gdc6yp"; depends=[Rcpp RcppArmadillo]; }; leprechaun = derive2 { name="leprechaun"; version="1.0.0"; sha256="1y30s519502bqabzsf1njf3zzqlbmr4sbmsm57ci1r6dv4miijkh"; depends=[cli fs jsonlite roxygen2 usethis]; }; leri = derive2 { name="leri"; version="0.0.1"; sha256="1309v58xdw3p6y2wpnl64vgsds5kvfiary2a3fa041kz23jzbp3c"; depends=[ncdf4 raster]; }; lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; less = derive2 { name="less"; version="0.1.0"; sha256="1pgixa04rjngfg0yhxyg4qhd6g0pj8zyb3q8mfa3fjxzpywdy70a"; depends=[caret e1071 FNN MLmetrics pracma R6 randomForest RANN rpart wordspace]; }; - lessR = derive2 { name="lessR"; version="4.2.3"; sha256="0yirj4ai20ydnjr5xx7dxk4yxfjdimwgbkizx0jnr39ypq08314s"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; + lessR = derive2 { name="lessR"; version="4.2.4"; sha256="1lcylsb70i7wyaqkwgwq8k62p265aa7azfq1a8n90lghjadckcck"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; lest = derive2 { name="lest"; version="1.1.0"; sha256="1d69kvdl31crv4ik8bwylq3s3f4skzrjc4x49c79w443g64n2jp9"; depends=[]; }; lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="4.0"; sha256="07l1wgwnkqnvh47ssg62vj88vgml52n0934w00pjxdk90kk3c5zs"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; @@ -11568,9 +11633,10 @@ in with self; { lfe = derive2 { name="lfe"; version="2.8-8"; sha256="0wdbhnyzzvpkjyjsxidkcwpssij3k476lhlfdkk2xwhnz8l2khhg"; depends=[Formula Matrix sandwich xtable]; }; lfl = derive2 { name="lfl"; version="2.2.0"; sha256="02kd7fz12v6xl1f3lv7kkxccln4fm8dmvbn7m9prbiawrbmy16dx"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; lfmm = derive2 { name="lfmm"; version="1.1"; sha256="1v2sb2qghwcln3b5rpzhakg562izlzyxzvz49nz74y0rh2gx7g9i"; depends=[foreach ggplot2 knitr MASS purrr Rcpp RcppEigen readr rmarkdown RSpectra]; }; + lfstat = derive2 { name="lfstat"; version="0.9.12"; sha256="0hl5b78llydcphbrg04fi5b4v7p6xxwlcwpl70m2537gra52wvdr"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr scales xts zoo]; }; lg = derive2 { name="lg"; version="0.4.1"; sha256="1srlklq6hkb4yd3lbbazswj866i3wzk2524hhj1v45yr7d5qhxv0"; depends=[ggplot2 ks localgauss logspline mvtnorm np tseries]; }; lgarch = derive2 { name="lgarch"; version="0.6-2"; sha256="05xksc4d6dbf5ls4lf2gpk9xyi99fikr7dva88b84rfgads1yhrh"; depends=[zoo]; }; - lgcp = derive2 { name="lgcp"; version="1.8"; sha256="1dw7zvl9mmwdx0kjrbfiq4c9x8ydg8kyf426xjpnmzf2jawmlqb0"; depends=[fields iterators maptools Matrix ncdf4 raster rgeos rpanel sp spatstat_core spatstat_geom spatstat_utils]; }; + lgcp = derive2 { name="lgcp"; version="1.8-2"; sha256="0q7w95gpvdzlli60dgpixl0rn05f4707xwyw215dsrc1z8znyk73"; depends=[fields iterators maptools Matrix ncdf4 raster rgeos rpanel sp spatstat_explore spatstat_geom spatstat_utils]; }; lglasso = derive2 { name="lglasso"; version="0.1.0"; sha256="0qkmlr7gfbw9m403676p4ip4hn2v2ll1jcwj5vhshcyb5whsr866"; depends=[glasso]; }; lgpr = derive2 { name="lgpr"; version="1.1.5"; sha256="03wf6n3agls48r1a82aw6sywj3hzs0pza29l3p68nlqlkf9amnnw"; depends=[bayesplot BH ggplot2 gridExtra MASS Rcpp RcppEigen RcppParallel RCurl rstan rstantools StanHeaders]; }; lgr = derive2 { name="lgr"; version="0.4.4"; sha256="09x1vw6cnc1c0p0ylcz1q1vcxyaf1kljhh7ni3gl5jm19zii2h4c"; depends=[R6]; }; @@ -11581,13 +11647,12 @@ in with self; { lhs = derive2 { name="lhs"; version="1.1.5"; sha256="0fb3bc3s5pbwg92qkjbg7v8ah36wm6qs05vf098hwjakr7f6yg3s"; depends=[Rcpp]; }; liGP = derive2 { name="liGP"; version="1.0.1"; sha256="01yhrzx67gz7j201mkv1aracrvjh4hxkrc7jn48cfwz0dp1lznws"; depends=[doParallel foreach hetGP laGP]; }; liayson = derive2 { name="liayson"; version="1.0.5"; sha256="1h3xyy40zvmllqlskgnmm755m0xds66hgpgk48zc9i2i3qj6165j"; depends=[ape arules biomaRt distances e1071 gplots matlab phangorn plyr proxy RColorBrewer]; }; - libbib = derive2 { name="libbib"; version="1.6.3"; sha256="04skv3l8f48wbzm304l8fzk354wia102mrlbfysklszmxzy9vidx"; depends=[curl data_table pbapply stringr xml2]; }; + libbib = derive2 { name="libbib"; version="1.6.4"; sha256="1jcdsvg5xgc7yzdc00k2brsiviyzflsdgiyk77icw08bwlbxh9mk"; depends=[curl data_table pbapply stringr xml2]; }; libcoin = derive2 { name="libcoin"; version="1.0-9"; sha256="1syrcdj5qg5m3zd3dlxgpfklswbalfg42w058dr09hnzqsvx0z9d"; depends=[mvtnorm]; }; libgeos = derive2 { name="libgeos"; version="3.11.0-2"; sha256="0plm20y4c2x1qwjq3ds8fm3fjgv1rb2apvgyvrmvnwpsqhizbfzy"; depends=[]; }; libr = derive2 { name="libr"; version="1.2.8"; sha256="0kqjr327hck9p763wzzvh5skimn4larblfyhfqqyc2323z2g5d11"; depends=[common crayon data_table dplyr haven openxlsx Rcpp readr readxl tibble]; }; librarian = derive2 { name="librarian"; version="1.8.1"; sha256="0bbgx9pdwcv64p6zdrw3m0893ar4bw6z90vhbgplp53l65cch548"; depends=[BiocManager remotes]; }; librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; - libsoc = derive2 { name="libsoc"; version="0.7.3"; sha256="0baglknb67gmzr4cimlvz44f11np8glcdjdgs3jy8qlz0c8pm95p"; depends=[]; }; libstableR = derive2 { name="libstableR"; version="1.0.2"; sha256="1gkcgbc8a7ks9x8mqmlz98hk55q3qy62izam7csz1s0r5dzsyqcr"; depends=[Rcpp RcppGSL]; }; lidR = derive2 { name="lidR"; version="4.0.1"; sha256="0bfnnshnc3wcz8zghr71srfdhd32wmmwadg5qw85ydvz7bpsgv8i"; depends=[BH classInt data_table glue lazyeval raster Rcpp RcppArmadillo rgl rlas sf sp stars terra]; }; lidaRtRee = derive2 { name="lidaRtRee"; version="4.0.3"; sha256="076gf94kf1m7nxmwacd3fqqq09qn6lrpzm0535mmx0cb0cwy8vga"; depends=[car gvlma imager leaps lidR reldist sf terra]; }; @@ -11631,9 +11696,9 @@ in with self; { lineup = derive2 { name="lineup"; version="0.42"; sha256="1k6l3vl9g6cz3jl1fz6r1dm3lfpmis6yylra69c3s8l8l4fz0gzy"; depends=[class qtl]; }; lineup2 = derive2 { name="lineup2"; version="0.6"; sha256="0qkxwn30g0bjm9aq9a59pb3xq844qr43ribnk607zlf8lwbibsk2"; depends=[Rcpp]; }; lineupjs = derive2 { name="lineupjs"; version="4.6.0"; sha256="198a87hhn1f77ix3mrv8mi04qxlv392aw1cg852h8s6sr2ayxqgl"; depends=[htmlwidgets]; }; - lingglosses = derive2 { name="lingglosses"; version="0.0.4"; sha256="19nsdqvxj8xa0xaf5qbmwxs6fakax9invg36fc1npscf48d3fjl7"; depends=[htmltools kableExtra knitr rmarkdown]; }; + lingglosses = derive2 { name="lingglosses"; version="0.0.5"; sha256="0rwilnqv1lzmw61y1prjp3mvl4q61jr3pwkifq2mmw5vj307iciz"; depends=[htmltools kableExtra knitr rmarkdown]; }; lingmatch = derive2 { name="lingmatch"; version="1.0.4"; sha256="1n6d3xx2ilkp37ia6s578k8rlqq4faxd8k41xjgy866590jjjrmw"; depends=[Matrix Rcpp RcppParallel]; }; - lingtypology = derive2 { name="lingtypology"; version="1.1.9"; sha256="09z3fraycgzykwqiaidsnzgcq8zgl0msa40nz0gmxirrksw8dcq0"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; + lingtypology = derive2 { name="lingtypology"; version="1.1.10"; sha256="0ir90f0zkafdmhmnsa8i24xhzn7bddfa7f2nfigpwxpll6q22113"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; linguisticsdown = derive2 { name="linguisticsdown"; version="1.2.0"; sha256="1y2g8h0p4q4mjrawzyprsdw8ynqcbpnjypyhdaf03pcwqglcirkl"; depends=[DT knitr magrittr miniUI rstudioapi shiny stringr]; }; link2GI = derive2 { name="link2GI"; version="0.5-0"; sha256="0rpanjp6nwrffw02qsd3dq7x5f9pa4cq7cbny4bwiig4cdf7sgrk"; depends=[devtools R_utils raster roxygen2 sf stringr]; }; linkcomm = derive2 { name="linkcomm"; version="1.0-14"; sha256="15xm4c7sqpid1vjra250dnvdx98qgzbzmvaycf3zqqnqcmy5bw9n"; depends=[dynamicTreeCut igraph RColorBrewer]; }; @@ -11642,7 +11707,7 @@ in with self; { linkspotter = derive2 { name="linkspotter"; version="1.3.0"; sha256="0fwkbz84vq0v5n5xgv1n99ph7qdz08hjj46ac4q293zarg1xk328"; depends=[dplyr energy ggplot2 infotheo mclust minerva pbapply rAmCharts shiny shinybusy tidyr visNetwork]; }; linl = derive2 { name="linl"; version="0.0.4"; sha256="1wq0wm3k12sfvg0nzdsdxb4qc79kny7qvckxplfgaj6y62vcjxxl"; depends=[knitr rmarkdown]; }; linne = derive2 { name="linne"; version="0.0.2"; sha256="19x13hf3skvxihlpa8wy05vlc94yv7nfs8b1pr8br76wk1xdkjvx"; depends=[cli magrittr purrr R6 rlang shiny]; }; - linpk = derive2 { name="linpk"; version="1.1.1"; sha256="0bii49b19kf50gbnv2am7kwy2gb9gkxv8vplcwlmm6k9b4gw9pjb"; depends=[mvtnorm]; }; + linpk = derive2 { name="linpk"; version="1.1.2"; sha256="0i87sfh01dl3xqs5vy3ha2prg952zpiq8fbl2amaiamg1qwl2y34"; depends=[mvtnorm]; }; linprog = derive2 { name="linprog"; version="0.9-4"; sha256="1d34m2nyk7m6j2dci69bhy5mlw479xax1517j7f14pq7vhpsm9l1"; depends=[lpSolve]; }; lintools = derive2 { name="lintools"; version="0.1.6"; sha256="1hh1wywa26a9aa2xrmaz2w95wgk8x7cj0b9731yfq0bzzphh6xdl"; depends=[]; }; lintr = derive2 { name="lintr"; version="3.0.2"; sha256="1j9l5lsa88hl5b3lw1789868pm0m2sbahyqayj9213d7zspp0slz"; depends=[backports codetools crayon cyclocomp digest glue jsonlite knitr rex xml2 xmlparsedata]; }; @@ -11658,7 +11723,7 @@ in with self; { listarrays = derive2 { name="listarrays"; version="0.3.1"; sha256="0nfpqywq9pl9yj566y0jw0h89g0ppsc614538ns1jc3l5r2myils"; depends=[]; }; listcomp = derive2 { name="listcomp"; version="0.4.1"; sha256="0h3wmlm3y3vr21x4ik785ring57z5cjhlwvsljh06m5m3fkv8nxr"; depends=[rlang]; }; listcompr = derive2 { name="listcompr"; version="0.4.0"; sha256="1pmk56wz6yl1qixfk9ci1p96z7qwz65xyb6k5k46l5nbwal6ik4a"; depends=[]; }; - listdown = derive2 { name="listdown"; version="0.5.2"; sha256="0h36m1m598zrr37fsam51b54aqs0mi8qfj5pvhkl77n9c67y347f"; depends=[checkmate fs rmarkdown tibble yaml]; }; + listdown = derive2 { name="listdown"; version="0.5.4"; sha256="1pb738s1pm86k51yaffdzlkyhgsxs383mrlvpsqp8a7ii4nmbg3j"; depends=[checkmate fs rmarkdown tibble yaml]; }; listenv = derive2 { name="listenv"; version="0.8.0"; sha256="0ps8bk7zlhbviawrw7vw25skjq81hkk3ijyi6g74dmfqy8zsyapx"; depends=[]; }; listr = derive2 { name="listr"; version="0.1.0"; sha256="1k8djk2nvqyyl9ffmfr4djciryha9x22icq972k38990nx2w0al2"; depends=[rlang tidyselect]; }; listviewer = derive2 { name="listviewer"; version="3.0.0"; sha256="0zirxdj58h43062f68h6nqcgmpnvdglxx3kjbs4i4k0z9wvqhx8r"; depends=[htmltools htmlwidgets shiny]; }; @@ -11677,7 +11742,7 @@ in with self; { llbayesireg = derive2 { name="llbayesireg"; version="1.0.0"; sha256="0jhkmrjkqfm1flwsbpv6060j6g7cj4ngm0drvrlvsiqpni0k96mh"; depends=[coda ggplot2 llogistic MASS MCMCpack Rcpp rstan StanHeaders]; }; llogistic = derive2 { name="llogistic"; version="1.0.3"; sha256="0wfszgcdi0i3lsm7gsih6a411v353c2gpbg3f06n6c2n35939lsl"; depends=[]; }; lm_beta = derive2 { name="lm.beta"; version="1.6-2"; sha256="01ys268xx1bhirr6axbc3l6jqnks7d9y1wyqy66bf0fgyz6z4ppb"; depends=[]; }; - lm_br = derive2 { name="lm.br"; version="2.9.5"; sha256="0q9s2drfmbq78pbkk466nqli5wwqrgyszgp0g7f2hmpazhj89y3g"; depends=[Rcpp]; }; + lm_br = derive2 { name="lm.br"; version="2.9.6"; sha256="1gy6j7fk8maa98c0srx03jsjrhj8gcxq32gszxh95zl268hnyspy"; depends=[Rcpp]; }; lmDiallel = derive2 { name="lmDiallel"; version="0.9.5"; sha256="1hgd4j5f23b4am8d8ljnvks9jzcy0z592np0j2kfjpiwca1zl31w"; depends=[multcomp plyr sommer]; }; lmForc = derive2 { name="lmForc"; version="0.1.0"; sha256="0v1r7yv0i3sc6cii78d9f9d3a6rvpvwrs6k3byi825r497xjgw3j"; depends=[]; }; lmPerm = derive2 { name="lmPerm"; version="2.1.0"; sha256="1ss2hcfxqvfq4n6hypv7jp0n0apby9payxzaswaysr5368lkidn3"; depends=[]; }; @@ -11686,7 +11751,7 @@ in with self; { lmap = derive2 { name="lmap"; version="0.1.1"; sha256="0d9blb8hgq2b3klczml74sgpkzbg8v4kn5mzvmip50s1bkk0brfz"; depends=[dplyr ggforce ggplot2 ggrepel nnet tidyverse]; }; lmboot = derive2 { name="lmboot"; version="0.0.1"; sha256="1v7a3vlv0187mpg3y3pj7f3pbk1v5n6amw732chy10vdw5nmfkwd"; depends=[evd]; }; lmds = derive2 { name="lmds"; version="0.1.0"; sha256="130azb0nc2wwxv0qi8v5s4rd02p9lc92zwn634pv7b8awbw81i65"; depends=[assertthat dynutils irlba Matrix]; }; - lme4 = derive2 { name="lme4"; version="1.1-30"; sha256="03rhg6cnsvdk06a1yxkivfvfwlx9934nd9q6jnp0bzscnv2dzazx"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; + lme4 = derive2 { name="lme4"; version="1.1-31"; sha256="1zgdfbzc8lv4rrsjdacagwa693ij2bmn6xkc1bnfbv1z7pix3zss"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; lmeInfo = derive2 { name="lmeInfo"; version="0.3.0"; sha256="1y1793h5wd6xqj46bkr0xw47287bczhs4kiv1v2cbi70nr628w0d"; depends=[nlme]; }; lmeSplines = derive2 { name="lmeSplines"; version="1.1-12"; sha256="140l95c6yys2rdpyh7clqx4x4qfd4w36hpz6jkb2ygbh90ikzi2r"; depends=[nlme]; }; lmerTest = derive2 { name="lmerTest"; version="3.1-3"; sha256="1zd8gqjkazhxgpnnr484xwsq30p62fq8592nzyc171zjyplpbaim"; depends=[ggplot2 lme4 MASS numDeriv]; }; @@ -11699,6 +11764,7 @@ in with self; { lmmpar = derive2 { name="lmmpar"; version="0.1.0"; sha256="1l3zjmlfjfn2wv4yayqzv6qrwaxk2sgx3hjx371b5fs54zspdj20"; depends=[bigmemory doParallel MASS matrixcalc mnormt plyr]; }; lmodel2 = derive2 { name="lmodel2"; version="1.7-3"; sha256="1fiin2nkffbihz1s8ixmw9lgf8mn3j9krr8iiflizk10mdv54hnb"; depends=[]; }; lmom = derive2 { name="lmom"; version="2.9"; sha256="145va4dhl767mywk36xcmqilm21sfkqhcqi0s07qgq3k39sn4gin"; depends=[]; }; + lmomPi = derive2 { name="lmomPi"; version="0.6.2"; sha256="0k1clrl3pbbnjaz1yp5syzdvy64zz1q1nd3xsbacwrl0q865xs3n"; depends=[lmom stringr]; }; lmomRFA = derive2 { name="lmomRFA"; version="3.4"; sha256="10mc411b19r7jxixkdy85s8b6r7q1gf3073442cszhymyrfdmvb7"; depends=[lmom]; }; lmomco = derive2 { name="lmomco"; version="2.4.7"; sha256="1hn74zj7c165qsq1icgx9qvdmgxxh4hhn062k7xnvm5yh94g4nvz"; depends=[goftest Lmoments MASS]; }; lmreg = derive2 { name="lmreg"; version="1.2"; sha256="02a4nqqcfkjlq21mpk8abd4lj4ib2nps3ndf7zgmzygkd1z0df18"; depends=[MASS]; }; @@ -11727,17 +11793,18 @@ in with self; { locationgamer = derive2 { name="locationgamer"; version="0.1.0"; sha256="0y99m003s177x57m4ynxd8jd2xzl5zb4bj7jnbc04h22ffdl6m6f"; depends=[]; }; locfdr = derive2 { name="locfdr"; version="1.1-8"; sha256="1falkbp2xz07am8jlhwlvyqvxnli4nwl188kd0g58vdfjcjy3mj2"; depends=[]; }; locfit = derive2 { name="locfit"; version="1.5-9.6"; sha256="0xilf6gp3m8xla2fvxr491j31pvim707mnhswvm9yxnb0d09xs0y"; depends=[lattice]; }; - locits = derive2 { name="locits"; version="1.7.5"; sha256="0il7wf3373kcziy6bia3w57mm7i5wcqbzarzr1v9d8r5zw7h96p1"; depends=[igraph wavethresh]; }; - locpol = derive2 { name="locpol"; version="0.7-0"; sha256="1p915n0l09kbwkly627074jslxl01yssp1rf0c7sygvsw6sgy5lm"; depends=[]; }; + locits = derive2 { name="locits"; version="1.7.6"; sha256="15jalcaqz5yymrhlzlsr3xmy34dspnv08lmychqjps8vv0irpr3j"; depends=[igraph wavethresh]; }; + locpol = derive2 { name="locpol"; version="0.8.0"; sha256="1bip9x45kdnwc14rvk3ckzfbs32yc2wiid1ypmbbin4mk7364zxk"; depends=[]; }; locpolExpectile = derive2 { name="locpolExpectile"; version="0.1.1"; sha256="1phwcnbk1vmdk3qmfx2nd6crplly2lb8gb57yl67ky3c4sryh358"; depends=[expectreg lestat locpol matrixcalc quantreg]; }; lodGWAS = derive2 { name="lodGWAS"; version="1.0-7"; sha256="0g5b44d3wb5hnx5l2n76myb1pc9ml3a052n1a4gvgqapa5as35s2"; depends=[rms survival]; }; loder = derive2 { name="loder"; version="0.2.0"; sha256="0m6g8c25dmq0wgpy8y6cbggymxdvqwb6lp2yzs5bgpq183512spb"; depends=[]; }; lodi = derive2 { name="lodi"; version="0.9.2"; sha256="16xqcza87gsqi6kzx0bdv3w9zyvvppjd20rq08lc8vb75nlkx1yb"; depends=[rlang]; }; lodr = derive2 { name="lodr"; version="1.0"; sha256="0bmdw489dv1069krnx9yi0bcgx1vx4ymc6s4pix4shha5c5fbiz4"; depends=[Rcpp RcppArmadillo Rdpack]; }; loe = derive2 { name="loe"; version="1.1"; sha256="1n16pgfxg9vcn729xxjbbvavg2ywbdcch9v2ph8nv3z7psc0q46c"; depends=[MASS]; }; + loedata = derive2 { name="loedata"; version="1.0.1"; sha256="01w0f83n1jzchw12w1wg18lq6idlp9ywr52nipg2l7pn9aa30gvv"; depends=[]; }; loewesadditivity = derive2 { name="loewesadditivity"; version="0.1.0"; sha256="0j9vvh2ys09hy2k3mbrlf0p493ymrxvfsdcjw0p6rlls54z9lqqc"; depends=[dplyr ggplot2 gridExtra magrittr metR rlang rootSolve tidyr viridis]; }; log = derive2 { name="log"; version="1.1.1"; sha256="1vzssrg2qqxd27b9d36v3mmkhgkx8n724ql9yhl5p8dy28zgsdxd"; depends=[cli crayon R6]; }; - log4r = derive2 { name="log4r"; version="0.4.2"; sha256="0d7yxp3h7iy0miaprgp16n5vbxk0mvy8aci8r0mmml6wcl2h4jlj"; depends=[]; }; + log4r = derive2 { name="log4r"; version="0.4.3"; sha256="0k4hyln1mqxkp8y383mgs0ds0h05hs7d2mpicfnz7n586nfx9qyz"; depends=[]; }; logKDE = derive2 { name="logKDE"; version="0.3.2"; sha256="09gachibj0klqa9ijw572lwphbh9qj6zqray5byq1dh7zsiq516q"; depends=[pracma Rcpp]; }; logNormReg = derive2 { name="logNormReg"; version="0.5-0"; sha256="0lv5m6yz1v8pi1svw9qh3gkq3r0lp13qhx3p6g6yvzqwd0px0pip"; depends=[]; }; logOfGamma = derive2 { name="logOfGamma"; version="0.0.1"; sha256="0r7di0l646ycfmdjk8hli6b0v7qj0i8z3i8i7rwd3fsblb2q22vd"; depends=[]; }; @@ -11764,12 +11831,12 @@ in with self; { lognorm = derive2 { name="lognorm"; version="0.1.10"; sha256="021g3g7hyxcrj2lzqfjxj2ypcn8c6qminr0l6sdydynvjdjjv0pc"; depends=[Matrix]; }; logr = derive2 { name="logr"; version="1.3.3"; sha256="08b32wddzs7jwhbkfvm2nz6s096kk31afv78hmdippykmzws37fj"; depends=[this_path withr]; }; logrx = derive2 { name="logrx"; version="0.1.1"; sha256="02xkx9sfis4rn3f9hdaj5idm104r0mpp7rx3spy294ylwv7bdv2a"; depends=[dplyr magrittr miniUI purrr rlang rstudioapi sessioninfo shiny stringi stringr tibble tidyr waiter]; }; - logspline = derive2 { name="logspline"; version="2.1.17"; sha256="05c8l22zcvb086909h9vw7icphww703vkcxp2h881y4n1232pdq3"; depends=[]; }; + logspline = derive2 { name="logspline"; version="2.1.19"; sha256="1527cnnn5qdjp8gr4yls0jp0aachjz5s2v79vs79vrfyvxp9w89p"; depends=[]; }; lokern = derive2 { name="lokern"; version="1.1-9"; sha256="1fms79bb4y6ryzmxhpc544zh52xgd879gpcigc24bjhd7whl9nry"; depends=[sfsmisc]; }; lolR = derive2 { name="lolR"; version="2.1"; sha256="0lrmn9lzyyfr1y0i7qp6xfpdxyisbkajwg0jkrqkiw687psnh2rc"; depends=[abind ggplot2 irlba MASS pls robust robustbase]; }; lolog = derive2 { name="lolog"; version="1.3"; sha256="0lfb3d7rxssvzd70gixpmr8r8hcmxplg5yy181hdrvjsdc8w8jn4"; depends=[BH ggplot2 intergraph Matrix network Rcpp reshape2]; }; lomb = derive2 { name="lomb"; version="2.1.0"; sha256="1hgf28bs5g07v7j05qxahs0q3j683401ssqk1r256pvk8x9j445l"; depends=[ggplot2 gridExtra plotly pracma]; }; - long2lstmarray = derive2 { name="long2lstmarray"; version="0.0.1"; sha256="1ms47aa5r8cr2w69nv11qjpzy4sh6acys8kq2n548jsdx4z1sc26"; depends=[abind dplyr]; }; + long2lstmarray = derive2 { name="long2lstmarray"; version="0.2.0"; sha256="1d0w5qqqq3jak72ci7p12rcs4hjwmvwlaf47pibc6y9lax609kxw"; depends=[abind dplyr]; }; longCatEDA = derive2 { name="longCatEDA"; version="0.31"; sha256="0dji41lsknfwmgb2fczzm37dm97wvi45rh878w7pwlzwdh9vq8va"; depends=[]; }; longROC = derive2 { name="longROC"; version="1.0"; sha256="1fs11vqi4hy99d7shzzdvd6ic5gay6rh2027w6j0qpd04n8q88m8"; depends=[survival]; }; longRPart2 = derive2 { name="longRPart2"; version="0.2.3"; sha256="1vqcsxi6c4hqrpk3ns7yhghfryin1psxl38qkz2xz8cvyn58f685"; depends=[formula_tools ggplot2 MASS nlme rpart]; }; @@ -11787,7 +11854,7 @@ in with self; { lookupTable = derive2 { name="lookupTable"; version="0.1"; sha256="0ipy0glrad2gfr75kd8p3999xnfw4pgpbg6p064qa8ljqg0n1s49"; depends=[data_table dplyr]; }; loon = derive2 { name="loon"; version="1.4.0"; sha256="0sgvzq06qk7id7h1hr0pa8hc02zp4r25ys3ifv7q9119c618q9an"; depends=[gridExtra]; }; loon_data = derive2 { name="loon.data"; version="0.1.3"; sha256="0sdld3yggjadykqaljf0p4cymy2c47yaxjphc6jwyragzpv4awzw"; depends=[]; }; - loon_ggplot = derive2 { name="loon.ggplot"; version="1.3.2"; sha256="1cla27s6dd0mz2sann42waia800a7s42wchs7zb97qwjfl2gpmw5"; depends=[ggmulti ggplot2 gridExtra loon patchwork rlang scales]; }; + loon_ggplot = derive2 { name="loon.ggplot"; version="1.3.3"; sha256="15by2z3iy5p3frhb1y8rg17gbdds45b01qpcya210hia52b9vdlq"; depends=[cli ggmulti ggplot2 gridExtra loon patchwork rlang scales]; }; loon_shiny = derive2 { name="loon.shiny"; version="1.0.3"; sha256="1bv8a4rrrlf80r9pidjxaaql4rrm6gz13pjz1mii97q9s3xjn0id"; depends=[base64enc colourpicker gridExtra loon loon_ggplot shiny]; }; loon_tourr = derive2 { name="loon.tourr"; version="0.1.3"; sha256="1vdxqdsr89gzvsw9gx001rw416586lqyq0rp3g55n1lh6h9cy19d"; depends=[loon loon_ggplot MASS tibble tourr]; }; lordif = derive2 { name="lordif"; version="0.3-3"; sha256="1yby9fvzdi1dzvzp6d6h144k1p9nfacd8l5bd66dmhnc8sp2nlx5"; depends=[mirt rms]; }; @@ -11802,10 +11869,10 @@ in with self; { lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17.9"; sha256="04bqa719za6hbbip695190zcq6nkwqmm0qjfw8gpfkqpy7ryqlkv"; depends=[]; }; lpc = derive2 { name="lpc"; version="1.0.2.1"; sha256="1g1dzm7pcrbrdk1dmhbdhj58j69dzar41al3i8q4gysf3adqzsvv"; depends=[]; }; lpcde = derive2 { name="lpcde"; version="0.1.0"; sha256="0lr7g01ld9cq6xr5w1svlrrylba0kas0b2rzdmdnwf6jsf8296cz"; depends=[combinat ggplot2 MASS Matrix mvtnorm purrr Rcpp RcppArmadillo]; }; - lpdensity = derive2 { name="lpdensity"; version="2.3.1"; sha256="13yqllfffhkzsy8h8kisllw467vaajg4dk51sc6lmc63hs6v7y4r"; depends=[ggplot2 MASS]; }; + lpdensity = derive2 { name="lpdensity"; version="2.3.2"; sha256="1pyvqhxxvcd3l0wr0a3a39pxfbg7d66qdhynfb4jchd5sqj2p6a5"; depends=[ggplot2 MASS]; }; lphom = derive2 { name="lphom"; version="0.3.1-1"; sha256="18scyg2rd30haawmnlxrkxvg6d8w9qqs7vj9cxvkg9flalsd8isg"; depends=[lpSolve]; }; lpint = derive2 { name="lpint"; version="2.1"; sha256="0xakxmzgxlg3pmc978sgfnk0wgpbzmm5lbn1wqkz792j0g97jr31"; depends=[]; }; - lpirfs = derive2 { name="lpirfs"; version="0.2.1"; sha256="13wqf9c5pf1dgingy02y1cx2iw3grx7vkqiqhw2dc78q26mpwmlq"; depends=[doParallel dplyr foreach ggplot2 gridExtra lmtest plm Rcpp RcppArmadillo sandwich]; }; + lpirfs = derive2 { name="lpirfs"; version="0.2.2"; sha256="01cvdznz1pyvxj0vixwq9av4vys23mrzzbjd8vnngsm6rmrwci2z"; depends=[doParallel dplyr foreach ggplot2 gridExtra lmtest plm Rcpp RcppArmadillo sandwich]; }; lpl = derive2 { name="lpl"; version="0.11"; sha256="11w2cr5n72p4wds5dm039rdinhvxjfqvrmisksfpf47jddjxhm42"; depends=[MASS survival]; }; lpme = derive2 { name="lpme"; version="1.1.3"; sha256="1ch11cwjci98m7952p9wdsh9fj5y1mjya6ayq0q4wmbm824qfpzb"; depends=[decon flexmix locpol Rcpp RcppArmadillo]; }; lpridge = derive2 { name="lpridge"; version="1.0-8"; sha256="0jk4l95z9rcdqkc8lpp4sf1mg2dqj67rhqw1iafrxy5lx4jfaqqx"; depends=[]; }; @@ -11824,7 +11891,7 @@ in with self; { lsei = derive2 { name="lsei"; version="1.3-0"; sha256="1dka0rigfw4vj809qma2dkiwjb3nw5635ynnba5cm299cn7hb2b2"; depends=[]; }; lsirm12pl = derive2 { name="lsirm12pl"; version="1.1.0"; sha256="193l17z9saqxxyswgy9schrilgr9x2idc900vkblsfhy0nl71chr"; depends=[coda dplyr ggplot2 GPArotation MCMCpack pROC Rcpp RcppArmadillo rlang]; }; lsl = derive2 { name="lsl"; version="0.5.6"; sha256="1hwzklx1qp5ljc059j2hridg3caw4cgn7rbqs8xh2arzcvqdw3rb"; depends=[ggplot2 lavaan reshape2]; }; - lslx = derive2 { name="lslx"; version="0.6.10"; sha256="189gpp1ikcp5ld4avipwckdz997v1cx2zas5a8b54nv246kb5hmd"; depends=[ggplot2 lavaan R6 Rcpp RcppEigen]; }; + lslx = derive2 { name="lslx"; version="0.6.11"; sha256="1mjkz3zgcajrrkq1igqq0a1rpxwvv41ankr5mj6mcjqpg4ggng1p"; depends=[ggplot2 R6 Rcpp RcppEigen]; }; lsm = derive2 { name="lsm"; version="0.2.1.2"; sha256="1sp6c3r3g0q9lynzpcjvfwrp7xml11q66cqcisjvidm79vxjgi5v"; depends=[dplyr ggplot2]; }; lsmeans = derive2 { name="lsmeans"; version="2.30-0"; sha256="1z35dzfgib0fk201gzjhgmnryhl3mkz50gz8g6nfv4mj9kzc5x5f"; depends=[emmeans]; }; lspartition = derive2 { name="lspartition"; version="0.4"; sha256="1n0pag5l4kx211dl5z9xbqijp7l04jcm0i6jgvkk2b0x9v32q4r5"; depends=[combinat dplyr ggplot2 MASS matrixStats mgcv pracma]; }; @@ -11834,6 +11901,7 @@ in with self; { lsr = derive2 { name="lsr"; version="0.5.2"; sha256="00mbnla74k7xcs8640chkcjydi945dahs2d6h1lv89nsrm8hpzx9"; depends=[]; }; lss2 = derive2 { name="lss2"; version="1.1"; sha256="1rkv26zq36zyh891xkkllxphwplljmzpy15g619x1w4qvsajyyg8"; depends=[quantreg]; }; ltable = derive2 { name="ltable"; version="2.0.2"; sha256="05sjyzq3s1bldndpwbknl9md3vzf664wvpkckwxnrswl9i9av6fn"; depends=[clipr]; }; + lterpalettefinder = derive2 { name="lterpalettefinder"; version="1.0.0"; sha256="1rrivlzrk2fzcnhyy3sv0n76v7lv4c1nwiwbr9f6rinqwx02k2dd"; depends=[dplyr ggplot2 jpeg magick magrittr png tidyr tiff]; }; ltm = derive2 { name="ltm"; version="1.2-0"; sha256="0vhgbk6j0z3limsrbjkjkpfn2whiaij5j4jf1gg66mjs9dlylap1"; depends=[MASS msm polycor]; }; ltmix = derive2 { name="ltmix"; version="0.2.1"; sha256="03i0gr79xiqnny57g0y9w5dfpw51gqhrkff2rh8rggsni20pzm1h"; depends=[gtools pracma]; }; ltmle = derive2 { name="ltmle"; version="1.2-0"; sha256="1mqrf77319cjs3q48iigrkjc3rjibz7qyij49a7l0nim3c1hd0b0"; depends=[Matrix matrixStats speedglm]; }; @@ -11841,7 +11909,7 @@ in with self; { ltsk = derive2 { name="ltsk"; version="1.0.9"; sha256="1zrcfhsm4599dj8dywzgpqabcc4sbfm7d99lxxmhqagqiqwamqyc"; depends=[]; }; ltsspca = derive2 { name="ltsspca"; version="0.1.0"; sha256="0hgl2zd8y01z8mhnqg1hlv1l7klpwhwk7q8b99pw9vgnh1f2gnfs"; depends=[pracma Rcpp RcppArmadillo]; }; ltxsparklines = derive2 { name="ltxsparklines"; version="1.1.3"; sha256="0f2ycgjdw9z9m730wh3k362aq71mwmxhnsxhcjxhj8c4lknr50br"; depends=[]; }; - lubridate = derive2 { name="lubridate"; version="1.8.0"; sha256="199b00cql07gf3rf4hh5ba34amnk0ai40zhx73dq1mpkn7ynxml7"; depends=[cpp11 generics]; }; + lubridate = derive2 { name="lubridate"; version="1.9.0"; sha256="0flh3arja7al9xznj5jvicadvq1kb2s63zyg63wlx2bii8gh8dmr"; depends=[generics timechange]; }; luca = derive2 { name="luca"; version="1.0-6"; sha256="0zrxrwpk7iblpysd4fbh50s5bmvd5l1bzbd8rdyk06wby6bcs1rk"; depends=[genetics survival]; }; lucas = derive2 { name="lucas"; version="1.0"; sha256="1ws35f2pq2y7nnik40nj4qpz1d499gfc5isr1409pwy6r5knb78q"; depends=[DBI plyr rpostgis RPostgreSQL]; }; lucid = derive2 { name="lucid"; version="1.8"; sha256="1dhbyr0l7cp5r0r7xdgqqxlix5hhk0v4v0zghd904dvfyaz2zdwi"; depends=[nlme]; }; @@ -11853,15 +11921,14 @@ in with self; { lutz = derive2 { name="lutz"; version="0.3.1"; sha256="15b8gzwykxyqycjba319jpsbny07j8ny9y4lnrg8mcf488ycz57y"; depends=[lubridate Rcpp]; }; luz = derive2 { name="luz"; version="0.3.1"; sha256="1wm8w7x9232ns6b7jvzw3isqrwbq0d6w9an21nna05s39nzyvniq"; depends=[cli coro ellipsis fs generics glue magrittr prettyunits progress purrr R6 rlang torch zeallot]; }; luzlogr = derive2 { name="luzlogr"; version="0.2.0"; sha256="0n0cm94aianwcypa0gwdjvyy3dwbkfv6zi1gq2jn57b41fg20lq5"; depends=[assertthat]; }; - lvec = derive2 { name="lvec"; version="0.2.4"; sha256="0f8bn1p3i2myz8nbw2iw48wm1v81f34zk0aqiqbvhsbpcxba2gdf"; depends=[BH Rcpp]; }; + lvec = derive2 { name="lvec"; version="0.2.5"; sha256="12q486xvnfyga15yx8av56sflahcni2wm09rx8abj8yzkjgfdiva"; depends=[BH Rcpp]; }; lvm4net = derive2 { name="lvm4net"; version="0.3"; sha256="1iq93mrdhymdixnk7y7rkibm3cqljl4y9qkjq4mzkcwcp4960y5q"; depends=[corpcor ellipse ergm glmmML igraph MASS mvtnorm network]; }; lvmcomp = derive2 { name="lvmcomp"; version="1.2"; sha256="08hs97bdz4n0bdhvqqq5xywfy140s69c750rn38criq4cw4gm3z7"; depends=[coda Rcpp RcppArmadillo]; }; lvmisc = derive2 { name="lvmisc"; version="0.1.1"; sha256="06ry1azfpqdh1hblhnc47n9265dkzhm96rajl8y7xnvqmv6ad8jj"; depends=[cowplot dplyr ggplot2 glue purrr rlang rsample tibble tidyselect vctrs]; }; lvnet = derive2 { name="lvnet"; version="0.3.5"; sha256="1wqqxavs2s0hmlifyaa1jrlc8hj4z72fkgjckkmh9m2r4jp9zy0g"; depends=[corpcor dplyr glasso lavaan Matrix mvtnorm OpenMx psych qgraph semPlot]; }; lvplot = derive2 { name="lvplot"; version="0.2.1"; sha256="0zby40866kvqxdz4hk6r0f4rfh7rzmy0n899cjjg5rqzcap7s5di"; depends=[ggplot2 RColorBrewer tibble]; }; - lwgeom = derive2 { name="lwgeom"; version="0.2-9"; sha256="1a0s15rliqd4zr6pyj76xln41f64s9yfwblk074342zvvbps5ck9"; depends=[Rcpp sf units]; }; + lwgeom = derive2 { name="lwgeom"; version="0.2-10"; sha256="1gdvp2q4mzlg1kpjqxkiqxw1r5c4n5pxwvhdbzp89a3gyyjgh7zf"; depends=[Rcpp sf units]; }; lwqs = derive2 { name="lwqs"; version="0.5.0"; sha256="11hkz3b3sgm6v30gwaq463klljjf6c4qx26a5ccc1wl6r439gxqp"; depends=[data_table gamm4 ggplot2 gridExtra gWQS plyr]; }; - lxb = derive2 { name="lxb"; version="1.5"; sha256="16x1mvhxqhvibzmv6mlqcmkgic2sha1xagf7r2azmn4z8x1m9w6n"; depends=[]; }; m2b = derive2 { name="m2b"; version="1.0"; sha256="0agzw67mmwrw1f61yn24z5w1pgjssdapg3li0a53i3ylnij45mzr"; depends=[caret caTools e1071 geosphere ggplot2 randomForest]; }; m2r = derive2 { name="m2r"; version="1.0.2"; sha256="0vwvpalap4z5x2004c92n0ka7i4l64ry5n8pmxs4vjpd8fyx91gc"; depends=[gmp memoise mpoly Rcpp stringr usethis]; }; m5 = derive2 { name="m5"; version="0.1.1"; sha256="0cw9b31j564qc5s1b37r1p425p4gndlzgwy34cn0m2c65jwiyf6h"; depends=[data_table lubridate stringi]; }; @@ -11870,7 +11937,7 @@ in with self; { mBvs = derive2 { name="mBvs"; version="1.5"; sha256="1fmi4ap55jl06swivspk24acwf5n4wd9agiw330z15x427j579s3"; depends=[]; }; mDAG = derive2 { name="mDAG"; version="1.2.2"; sha256="0k85sl0jmpcpiz92cz6x3kd8jc6yyfv9z4wm1kyaikcf5q4qlad4"; depends=[bnlearn logistf mgm nnet pcalg Rcpp RcppArmadillo]; }; mExplorer = derive2 { name="mExplorer"; version="1.0.0"; sha256="1563d9r7f25vw5vsph21z3dwz9n40dpaiyx28ay1bbp5i1x2l3rb"; depends=[nnet qusage]; }; - mFD = derive2 { name="mFD"; version="1.0.1"; sha256="1hq3981xar786bhg4xdvp17v4nds0fd1pgj7pcn8zyykr3r44g84"; depends=[ade4 ape betapart cluster dendextend FactoMineR gawdis geometry ggplot2 ggrepel Hmisc patchwork reshape2 rstatix vegan]; }; + mFD = derive2 { name="mFD"; version="1.0.3"; sha256="1kxiyvq7cs2hjprnj7snrdm5i2cnd00l1k59v18612d3z78b0nih"; depends=[ade4 ape betapart cluster dendextend FactoMineR gawdis geometry ggplot2 ggrepel Hmisc patchwork reshape2 rstatix vegan]; }; mFDP = derive2 { name="mFDP"; version="0.1.0"; sha256="0mvqg3qpv1zcj5lsk36dw4qs75i66cmv4qazpmsilhfh0v46p2dx"; depends=[]; }; mFLICA = derive2 { name="mFLICA"; version="0.1.5"; sha256="0znjp95ifwqpqwrnlcb77r1cdwpvbpql6ggnck018xddc8x40hzv"; depends=[dtw ggplot2]; }; mFilter = derive2 { name="mFilter"; version="0.1-5"; sha256="0anc93mciq8j64knd0i38sfgv10w1gd375wnfzn1fq8sj3lby7kb"; depends=[]; }; @@ -11891,6 +11958,7 @@ in with self; { macc = derive2 { name="macc"; version="1.0.1"; sha256="1qj4mlikbqrxa6m46527xmxdbk7b3l95z6jdgpmi0ifywjiv52a4"; depends=[car lme4 MASS nlme optimx]; }; macleish = derive2 { name="macleish"; version="0.3.9"; sha256="06r97fsasjj7qdm4p8yhvi2hfs1qy35xs0ay9i3bv5k09z5zfia7"; depends=[dplyr etl lubridate phenocamr readr rvest sf stringr xml2]; }; maclogp = derive2 { name="maclogp"; version="0.1.1"; sha256="1fbwv4j4mb7zkyc5vspq7k17pwr49dbvqkssda54ggcf1nbqykmb"; depends=[BMA plot_matrix rlist]; }; + macroBiome = derive2 { name="macroBiome"; version="0.1.0"; sha256="04fv6vrc4lmz23y0g1yzrgf0r4rm8k1v6vnizb1h0g4xyjw4ij80"; depends=[palinsol raster rworldmap rworldxtra sp strex]; }; macrocol = derive2 { name="macrocol"; version="0.1.0"; sha256="1qz5hsxg4ga4blbrakn4bia2l4lh6h5kh4ix7vnm7rl2f7yk4r5a"; depends=[httr lubridate openxlsx R_utils readxl]; }; mactivate = derive2 { name="mactivate"; version="0.6.6"; sha256="0qqhniq0wdhazhfiiw7g2b0v8jkc8jl2m117k1c6gnajg8gs1ymn"; depends=[]; }; maczic = derive2 { name="maczic"; version="0.2.0"; sha256="0r60q34ff38cdxf20b1f07wc4rbac1ch0chri36x221k2cnpxnhh"; depends=[BB emplik MASS mathjaxr mediation pscl sandwich survival]; }; @@ -11905,7 +11973,7 @@ in with self; { madsim = derive2 { name="madsim"; version="1.2.1"; sha256="11gfyimbz363p5xy1x6rsz5fcgzcr55myc5aaz5lazjkcnfn17aq"; depends=[]; }; magclass = derive2 { name="magclass"; version="6.0.9"; sha256="1a7qs93hww88skzcbrqlajhlxqp7x39bwclw4kd2af263iwjch4h"; depends=[abind data_table forcats maptools sp]; }; magi = derive2 { name="magi"; version="1.2.0"; sha256="1psl3rxhhlm4a1qd3xv1k4lcbj52wpg5aj1lwb83rcpwp3h5blsr"; depends=[BH deSolve gridBase gridExtra Rcpp RcppArmadillo roptim]; }; - magic = derive2 { name="magic"; version="1.6-0"; sha256="1gybia2aq80ldk1d845y5srncfzbbmpqhgl7vfaz7qqqjs6d85j5"; depends=[abind]; }; + magic = derive2 { name="magic"; version="1.6-1"; sha256="0xkrrg5qk62pfqx0avijdjaljzslpwd0hv2m52qnqwrbx5xfqyfa"; depends=[abind]; }; magicLamp = derive2 { name="magicLamp"; version="0.1.0"; sha256="1nfcnbqd6vawz8l3vgkbhmm462xdvaa4pn6axzmz8hl05xv2k3cv"; depends=[httr tibble]; }; magicaxis = derive2 { name="magicaxis"; version="2.2.14"; sha256="1gqnivn6qjmf7axdi0pff6a40clklbipcr6qvm6ivzqbqhpbcb7v"; depends=[celestial mapproj MASS plotrix RANN sm]; }; magicfor = derive2 { name="magicfor"; version="0.1.0"; sha256="07l33fczr1x42sfxrsqq4q6r65sdflin6l8f5cgclnvx1858jdip"; depends=[]; }; @@ -11918,6 +11986,7 @@ in with self; { maicChecks = derive2 { name="maicChecks"; version="0.1.2"; sha256="1c2n8avrhx0lvw9hi5slymm49lzf37hbkqzkqy230aikgmpv0cpa"; depends=[data_table ggplot2 lpSolve quadprog tidyr]; }; mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; mailR = derive2 { name="mailR"; version="0.8"; sha256="0p6vxzpyms1pxdb0j07izzxinw8xfmmbsj35nkypxyjv92qi802k"; depends=[assertthat R_utils rJava stringr]; }; + mailchimpR = derive2 { name="mailchimpR"; version="0.1.0"; sha256="1f7zjclgcky1qb88638lqhr71gi5myk3d3vxkjl1xnikhcr5l9mp"; depends=[jsonlite]; }; mailmerge = derive2 { name="mailmerge"; version="0.2.5"; sha256="0i11kaxv57imyms96j8dbry8nkll3smb19ba8agcl4zxp5xxqj7a"; depends=[commonmark fs glue gmailr googledrive lifecycle magrittr miniUI purrr rmarkdown rstudioapi shiny]; }; mailtoR = derive2 { name="mailtoR"; version="0.1.0"; sha256="0mnzblhy2vbxkf0k49bw1g08jw84s59zxbjrva2j2q347wzf4rgk"; depends=[glue htmltools]; }; makeFlow = derive2 { name="makeFlow"; version="1.0.2"; sha256="0r7a0klgx144rnks0fhjflnf8vfyyx2544n86nnxkp6cdvw0b4pw"; depends=[dplyr RColorBrewer]; }; @@ -11925,7 +11994,7 @@ in with self; { makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; makedummies = derive2 { name="makedummies"; version="1.2.1"; sha256="062rvijhy2dybpgxzp44cg46bfyb8lp9yasv3mhskhf3yg717sqp"; depends=[tibble]; }; makemyprior = derive2 { name="makemyprior"; version="1.1.0"; sha256="1h5v1n6b318j36w1c225wq8rdvr3dwsy421x43z0ff9ixidhylbv"; depends=[ggplot2 MASS Matrix rlang shiny shinyBS shinyjs visNetwork]; }; - makepipe = derive2 { name="makepipe"; version="0.2.0"; sha256="1vkhjas5d55n6rs73rccjh53r5cr1i6cn8gnspwir6gmw5fp445a"; depends=[cli nomnoml R6]; }; + makepipe = derive2 { name="makepipe"; version="0.2.1"; sha256="0mhabnmpvjamgam63nrjdimn94azn8crafr9jcwsr08lzlbv9kmv"; depends=[cli nomnoml R6 roxygen2]; }; maketools = derive2 { name="maketools"; version="1.2.2"; sha256="1p98vg5404np5fbiqajznmiqah8lyfv2xf741wjfm2jqkki9nk40"; depends=[sys]; }; makeunique = derive2 { name="makeunique"; version="1.0.0"; sha256="0pf8cl6p3q9fzj20s4gm8amw29291xf6711v0pmp0rcnwva1zav0"; depends=[]; }; malan = derive2 { name="malan"; version="1.0.2"; sha256="0qwf0r2gwpb93gzvyp8vaw7j6rhghr6nbrfp8xw876n5j5b9jhj3"; depends=[dplyr igraph magrittr Rcpp RcppArmadillo RcppProgress tibble tidygraph]; }; @@ -11945,9 +12014,9 @@ in with self; { manifold = derive2 { name="manifold"; version="0.1.1"; sha256="1amvx0f0q4s2qgn7q23gp967bcm0djbnb8bmf1bf3fm3iyn432hv"; depends=[Matrix Rcpp RcppArmadillo]; }; manipulate = derive2 { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; manipulateWidget = derive2 { name="manipulateWidget"; version="0.11.1"; sha256="1dpgzmiv08afm57yxr017b014lfn9h3pa4w65prk5k3dgn6p4wsv"; depends=[base64enc codetools htmltools htmlwidgets knitr miniUI shiny shinyjs webshot]; }; - manydata = derive2 { name="manydata"; version="0.7.5"; sha256="0msk835fq9py7ff7cglzpx0dnv3z2r0cqiv6q0cavhd4qliccyvn"; depends=[dplyr ggplot2 httr jsonlite lubridate messydates progress purrr remotes rlang stringr tibble usethis]; }; + manydata = derive2 { name="manydata"; version="0.8.2"; sha256="1l5g9169l2h4hp74cgnrnsfd0fmqirjk3g9csgxkyhggv2j6sb77"; depends=[cshapes dplyr ggplot2 ggraph httr janitor jsonlite messydates migraph plyr purrr remotes rlang stringr tibble tidyr usethis zoo]; }; manymodelr = derive2 { name="manymodelr"; version="0.3.7"; sha256="0kc4y9i21qkcg0pkwlas2mm06s54s70w5ybw4215qjwiy6xax268"; depends=[caret dplyr e1071 ggplot2 lme4 Metrics]; }; - manymome = derive2 { name="manymome"; version="0.1.4.3"; sha256="19snld2vanbdi0k0dqixx97m83k8nyn3pf6085gvcnvci73655bp"; depends=[boot ggplot2 lavaan pbapply]; }; + manymome = derive2 { name="manymome"; version="0.1.6"; sha256="06fxaanmmzvvmq68bjwrq63ndw16w8jg23b8v4cn1j543x7gaqxb"; depends=[boot ggplot2 igraph lavaan pbapply]; }; maotai = derive2 { name="maotai"; version="0.2.4"; sha256="178gsci0sdlqzdi18cnc7qvs008w5db50hd9ayzlvabsc0dk19z2"; depends=[cluster dbscan fastcluster labdsv Matrix RANN Rcpp RcppArmadillo RcppDist Rdpack RSpectra Rtsne shapes]; }; mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; }; mapSpain = derive2 { name="mapSpain"; version="0.6.2"; sha256="03j1i5sxxhdvg0g16jwx0n1nnf925clx3cig8bn8l61ab6grlmwm"; depends=[countrycode giscoR rappdirs sf]; }; @@ -11957,46 +12026,46 @@ in with self; { mapboxer = derive2 { name="mapboxer"; version="0.4.0"; sha256="0f873js87dgk8nqnhpxh88svvsbnk81vkm7gycb62mkr4xqsgqs7"; depends=[geojsonsf htmltools htmlwidgets magrittr purrr yaml]; }; mapcan = derive2 { name="mapcan"; version="0.0.1"; sha256="1a4135wc1h4nzcv6xq0bg75i744wyq8p7q0ix7y2x2gb6s35w46k"; depends=[dplyr ggplot2 magrittr]; }; mapchina = derive2 { name="mapchina"; version="0.1.0"; sha256="0f6ayq4izqxcj0hi2vfg0pc239hxgg7abb5476v5mfjjyi156mni"; depends=[sf]; }; - mapdata = derive2 { name="mapdata"; version="2.3.0"; sha256="0xnxh73rgcq55zrw81a2bq8yd67bxc2rafp4shf6nyrqj04iip0y"; depends=[maps]; }; + mapdata = derive2 { name="mapdata"; version="2.3.1"; sha256="1m2r4c8f7fp900g3sdjbfxxnxjla86hn75jd8hi96ms188p0j8b0"; depends=[maps]; }; mapdeck = derive2 { name="mapdeck"; version="0.3.4"; sha256="0agbf6bs3z7gwx1dj9jqlq6cllq5b65x89lkplm5mwhr20lzwvhr"; depends=[BH colourvalues geojsonsf geometries googlePolylines htmlwidgets jsonify magrittr rapidjsonr Rcpp sfheaders shiny spatialwidget]; }; mapedit = derive2 { name="mapedit"; version="0.6.0"; sha256="1ix0sjsqb6646xyi73am9ic97plw9y9p4pl8mrkpzvqzm0pxdhxx"; depends=[dplyr htmltools htmlwidgets jsonlite leafem leaflet leaflet_extras leafpm mapview miniUI raster scales sf shiny sp]; }; + mapfit = derive2 { name="mapfit"; version="1.0.0"; sha256="0xdkc325y75mcx082b6ncp1n2mfq0yq67j2mkfdcpavnz6s8jdqg"; depends=[deformula Matrix R6 Rcpp]; }; mapi = derive2 { name="mapi"; version="1.0.5"; sha256="1yljvapzkb43i2sbqsmn5aqp95hm8gjkz8m41x1chwyfddrzjsbw"; depends=[data_table pbapply Rcpp sf]; }; mapiso = derive2 { name="mapiso"; version="0.2.0"; sha256="1vdy5chs45zhrvm4zcqmpsz3sqgzwp8z6ssghkslc3kp2ka8f4px"; depends=[isoband sf]; }; - maple = derive2 { name="maple"; version="0.99.5"; sha256="1cg7grvnrfzdqghlfv5bsii6ips3mykgaw85vx0z9jafhdfpd32f"; depends=[dbarts dplyr ggalluvial ggplot2 plotly rlang Seurat shiny spruce]; }; mapme_biodiversity = derive2 { name="mapme.biodiversity"; version="0.2.1"; sha256="0fmxyxs8kgbd4hdcmam3fd253qngnhl7by9xmca2zbr79m1zjkha"; depends=[curl dplyr httr magrittr pbapply purrr rvest sf stringr terra tibble tidyr tidyselect]; }; mapmisc = derive2 { name="mapmisc"; version="1.8.0"; sha256="0xp2ns6j8craz74jw4gjjhzkfbbihcy8d9dg1i08hiws743kzd8s"; depends=[raster sp]; }; mapping = derive2 { name="mapping"; version="1.3"; sha256="1in4fjdiass73fdh3y937c600bdbv8gwjzxb5wj07wkc76jxb5ba"; depends=[cartography curl dplyr geojsonio ggplot2 htmltools httr jsonlite leaflet leafpop leafsync mapview rgdal s2 sf stringi stringr tmap tmaptools viridisLite]; }; mappings = derive2 { name="mappings"; version="0.1"; sha256="1f7m6nbdzdcxsk4m8rh8fzrck8pzxl2lgfz5c6wramwmp8rxczzb"; depends=[]; }; mapplots = derive2 { name="mapplots"; version="1.5.1"; sha256="18s2y66f8vi8g2r8a25zbgp2xm079r8v8qxv0w71h8krycs6vs9p"; depends=[]; }; - mappoly = derive2 { name="mappoly"; version="0.3.1"; sha256="12lxn4angyac1vaq2vb0xvfd2m9f40l53h9d0ywn3qqiwa77q737"; depends=[cli crayon dendextend dplyr fields ggplot2 ggpubr ggsci magrittr plotly princurve Rcpp RcppParallel RCurl reshape2 rstudioapi scatterplot3d vcfR zoo]; }; + mappoly = derive2 { name="mappoly"; version="0.3.2"; sha256="14prd8aqqbdfjnc923vcxh5ph2d6wi2dfzzvxmj19hff30vimpb2"; depends=[cli crayon dendextend dplyr fields ggplot2 ggpubr ggsci magrittr plot3D plotly princurve Rcpp RcppParallel RCurl reshape2 rstudioapi smacof vcfR zoo]; }; mappp = derive2 { name="mappp"; version="1.0.0"; sha256="19c8575w9r1w32hqwdmmggh21lqahy73vw8g5qbxxna6r77zg5c7"; depends=[memoise parallelly pbmcapply progress purrr rlang]; }; - mapproj = derive2 { name="mapproj"; version="1.2.8"; sha256="10bpib827011fpgvzsmlv4j3i41s0r3cv1hvawwdlk753s7i0pw6"; depends=[maps]; }; + mapproj = derive2 { name="mapproj"; version="1.2.9"; sha256="10nzfbyfkc545qxf51i33g0f8iiidcnhj971ylphnbh7j2sgla6s"; depends=[maps]; }; mapr = derive2 { name="mapr"; version="0.5.2"; sha256="0qc1zqa2yqgy777wbm6lj37vzaaxaz0gdimr62wv9fyddkbkshk4"; depends=[data_table ggplot2 gistr jsonlite leaflet maps RColorBrewer sp spocc]; }; - maps = derive2 { name="maps"; version="3.4.0"; sha256="0ispkx1szgwxhr0zzhdzgqqwcgc6psg7vry4sj4rb89w76rcq63r"; depends=[]; }; + maps = derive2 { name="maps"; version="3.4.1"; sha256="0034114pdakxcx480b45qy9j4vq1v5ss961ssy92w4nqiqhsb4z6"; depends=[]; }; mapsFinland = derive2 { name="mapsFinland"; version="0.1.1"; sha256="0kx9r28lvc6bbl478i9gyy58kbp5hi7akysyld87fxk5x0601j19"; depends=[]; }; mapsPERU = derive2 { name="mapsPERU"; version="1.0.2"; sha256="0ld6dyqrppmc1pna2h8szvr61d3bhljx9pv616wsp5j74na3ynbg"; depends=[tibble]; }; mapsRinteractive = derive2 { name="mapsRinteractive"; version="1.0.1"; sha256="03x5mza9y5kdqshma0k7bynmd3fffayy1j243m5bhw7ln85ws73x"; depends=[gstat raster rgdal rgeos sp]; }; mapsapi = derive2 { name="mapsapi"; version="0.5.3"; sha256="15k7wgbfkcjnsg9qazch949pqha2iv4mg9qzzb7lnb2597il78j7"; depends=[bitops httr RgoogleMaps sf stars xml2]; }; mapscanner = derive2 { name="mapscanner"; version="0.0.6"; sha256="017m33v2523rjmspfbzq1xnb3clzmbn4p1qqzp480j71wy5c1dry"; depends=[cli curl fs glue magick magrittr memoise pdftools png purrr raster Rcpp reproj RNiftyReg sf slippymath tibble]; }; - mapsf = derive2 { name="mapsf"; version="0.5.0"; sha256="04fzrv1qjh0n1h1jzsj5drzi7ax56bj9bwlrqiscy1v3w9cjbavz"; depends=[classInt Rcpp sf]; }; - maptiles = derive2 { name="maptiles"; version="0.3.0"; sha256="025n9fpl55n9wnslpjqr4z5y0q4mn68dplb3fm7wyn968kw7sbig"; depends=[curl png sf slippymath terra]; }; + mapsf = derive2 { name="mapsf"; version="0.6.1"; sha256="0gzqz94d5skrvl41qh1iyjc1r1dd6ag1d5s00l9dlhaawhhz2wfz"; depends=[classInt Rcpp sf]; }; + maptiles = derive2 { name="maptiles"; version="0.4.0"; sha256="0454jnc1l9mr7yh8q4gi07nsqbixsbyadfxyz3bmfmf1zzrqrqmr"; depends=[curl png sf slippymath terra]; }; maptools = derive2 { name="maptools"; version="1.1-5"; sha256="1p155w26hpmqc589kxha0xgw5b4x6610a3im7ap4mjx1sfavvn9w"; depends=[foreign lattice sp]; }; maptpx = derive2 { name="maptpx"; version="1.9-7"; sha256="0f85i3vwr5rvz261z6j7x15gsahxrq4qqddfb0qyhypgihvwh857"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-8"; sha256="1x35nk4fi2b62krcvcv187n5sbqrgvw4pbm7r19ps3jlanpi5ksm"; depends=[cluster rpart]; }; mapview = derive2 { name="mapview"; version="2.11.0"; sha256="02nkyh3m2l3jblii25c7p2yjjx7lka5l6hx7h882060959bczy47"; depends=[base64enc htmltools htmlwidgets lattice leafem leaflet leafpop png raster satellite scales servr sf sp webshot]; }; mar1s = derive2 { name="mar1s"; version="2.1.1"; sha256="1ljkvgxrramfx1rnp2rg6516mjxaa6s96amrnmqymnyjz7wlf37l"; depends=[cmrutils fda zoo]; }; - maraca = derive2 { name="maraca"; version="0.3.10"; sha256="00sz258pg4712j1727n3nxaw5br4hyp4jb6bayz7kqicwcg3rh8c"; depends=[checkmate dplyr ggfortify ggplot2 gridExtra sanon survival tidyr]; }; + maraca = derive2 { name="maraca"; version="0.4.0"; sha256="00qnknqzpw4y99v50r4pvyyn09183z4rc3c9v5z2h712cgnsp1ai"; depends=[checkmate dplyr ggfortify ggplot2 gridExtra hce survival tidyr]; }; march = derive2 { name="march"; version="3.3.2"; sha256="1qdjajb5mkq2r7p224kbxhf01s75hry5c5hx1cnsb48dfzd2s5xg"; depends=[]; }; marcher = derive2 { name="marcher"; version="0.0-2"; sha256="0hcxbfrwniih4kvx5sxhlffz1pc87kf52v8hvaf193rhhdykis5q"; depends=[magrittr Matrix minpack_lm mvtnorm numDeriv plyr RColorBrewer scales zoo]; }; marelac = derive2 { name="marelac"; version="2.1.10"; sha256="08phsghzvi0z78pkb5lkamni83fsw0bqfri99j6bjf6y14aygif9"; depends=[seacarb shape]; }; marg = derive2 { name="marg"; version="1.2-2.1"; sha256="1r6rl7dhvm8dghm7pm4hfw3924qja65hczl6d47v9ixnv4rxyzr9"; depends=[statmod survival]; }; margaret = derive2 { name="margaret"; version="0.1.4"; sha256="1hyflwfw9pphcbxnx9wf0alqi17s5k3j7wvh95ka2h9fvyrpj11r"; depends=[devtools dplyr httr igraph lubridate purrr readr rlang rvest scholar stringi stringr tibble tidyr tidytext tidyverse treemapify usethis widyr writexl]; }; - marginaleffects = derive2 { name="marginaleffects"; version="0.7.1"; sha256="1pvqjdy0j5d9gsplnw58c2fpsap6vv97bf2jz339dg9yrfl7af92"; depends=[checkmate data_table generics insight]; }; + marginaleffects = derive2 { name="marginaleffects"; version="0.8.1"; sha256="05ixa9sklk22qmfn7i1163w08zwb1lshf3xlnxrshvkr9bmlsv3x"; depends=[checkmate data_table generics insight]; }; marginalizedRisk = derive2 { name="marginalizedRisk"; version="2021.2-4"; sha256="0kagl9xghq9nsh9qvx165j1a5plh08zxhb6nm8j402mnl8pq7a4z"; depends=[]; }; margins = derive2 { name="margins"; version="0.3.26"; sha256="0sx5xjbzz1rjz8bklfna3171s53xsh123x4bh0kmwp006v8rv309"; depends=[data_table MASS prediction]; }; marima = derive2 { name="marima"; version="2.2"; sha256="03nvh93r4052li84yjqzc106gwh1542q9s192s980gs6sgy8scm6"; depends=[]; }; mark = derive2 { name="mark"; version="0.5.3"; sha256="01j6zji4mghihmywpdl33wj1pr8bf9vwkqgq50hagl09143d9zpr"; depends=[magrittr]; }; - markdown = derive2 { name="markdown"; version="1.3"; sha256="1w9hrc745zwgsnmr72jkwfh22xqgdsq089qcajlc69xrwya3wxxi"; depends=[commonmark mime xfun]; }; + markdown = derive2 { name="markdown"; version="1.4"; sha256="0ziwirplzjcci2km6wln035qfd2irjl58r77kl98r8s257kavqz0"; depends=[commonmark mime xfun]; }; markdownInput = derive2 { name="markdownInput"; version="0.1.2"; sha256="1qxil2liikbbn6w8niyc03fwqvwvdv6wiy98ip8j77729i7g2hln"; depends=[markdown shiny shinyAce]; }; marked = derive2 { name="marked"; version="1.2.6"; sha256="0k367sjyac1w894rndz5m0drmbd56nzyx5mr7mvhsqzq3gnv4dw5"; depends=[bookdown coda data_table expm kableExtra knitr lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; markerpen = derive2 { name="markerpen"; version="0.1.1"; sha256="0i9md9vbqkxibjkn37givxzq8mq0232cvv2fyz6g8cj6flxm6vzr"; depends=[Rcpp RcppEigen RSpectra]; }; @@ -12006,11 +12075,12 @@ in with self; { markophylo = derive2 { name="markophylo"; version="1.0.8"; sha256="05hfykjzx4wf2p1d6dvyx5lizfxmq3zprvnfg74r7l1izp7wpl38"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; }; markovMSM = derive2 { name="markovMSM"; version="0.1.1"; sha256="1y5brgpf52jws5s4hmki4q67pnji8vq9xbwiqp5pgdxz60byz1zx"; depends=[mstate survidm survival]; }; markovchain = derive2 { name="markovchain"; version="0.9.0"; sha256="050zfabmxs8pslsp5k0phflx8dqvfknnnpwc0wn9fm6i8npi42xm"; depends=[expm igraph Matrix Rcpp RcppArmadillo RcppParallel]; }; - marmap = derive2 { name="marmap"; version="1.0.6"; sha256="16r7in3m63l7fdwxwfdphcd4fr073fb675zabjxphpxmclikyxdz"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; + marmap = derive2 { name="marmap"; version="1.0.8"; sha256="06s5sqk63h160z3ly01aw4bjjqsl2585d94ln2vs1f1qhlqvs9ni"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; marp = derive2 { name="marp"; version="0.1.0"; sha256="0vywqsvmhghldrpnh2dpkgz41r7q463whfhgrn38pg8jnyhliiwi"; depends=[gtools statmod VGAM]; }; marqLevAlg = derive2 { name="marqLevAlg"; version="2.0.7"; sha256="0khmma0kd18js142cklw22kvqf64rsz8a7x0d43ykly584d4gdkw"; depends=[doParallel foreach]; }; + mas = derive2 { name="mas"; version="0.1"; sha256="07z0a6yis23zib16msjgx22mrag5xjbjpczj4kanvn8m3xikxrz3"; depends=[Rcpp RcppEigen truncdist]; }; mase = derive2 { name="mase"; version="0.1.3"; sha256="10wyrvh3p344inx5qbzkwh4rr3lmpnh1ikhrghmlqr5607kiy3fm"; depends=[boot dplyr glmnet magrittr Rdpack rpms survey]; }; - mashr = derive2 { name="mashr"; version="0.2.57"; sha256="1jjmqd3z3f7bxj6zw7yw6k9j6aiwnihd8cm14271kkpyy0id8slm"; depends=[abind ashr assertthat mvtnorm plyr Rcpp RcppArmadillo RcppGSL rmeta softImpute]; }; + mashr = derive2 { name="mashr"; version="0.2.69"; sha256="1m52bdyfni193fh8xhq6z372zj0cqc8x6wb8cwyls4qjwx3x263c"; depends=[abind ashr assertthat mvtnorm plyr Rcpp RcppArmadillo RcppGSL rmeta softImpute]; }; maskRangeR = derive2 { name="maskRangeR"; version="1.1"; sha256="1pdj0jdxrqss6hp20163fh1ywdd6wmwjl4s8gnpd3m9d1j955gr3"; depends=[dplyr e1071 lubridate magrittr raster sp]; }; mason = derive2 { name="mason"; version="0.3.0"; sha256="1x5wiagb1sy5gkp0xkbr1jzhrjg1c2bqdh4hy6igwcnws2cbhxyr"; depends=[broom dplyr magrittr purrr rlang tibble tidyr tidyselect]; }; masscor = derive2 { name="masscor"; version="0.0.7.1"; sha256="1153gx648csmzc2znf7l84f134qzp238hqj2s60r9najk1pczgf6"; depends=[metRology]; }; @@ -12018,7 +12088,7 @@ in with self; { mastif = derive2 { name="mastif"; version="1.0.1"; sha256="1jw7dz4qxyj848qm7lwg0klcw028260nizdi5gdwf7wd5a2nis9c"; depends=[corrplot RANN Rcpp RcppArmadillo repmis xtable]; }; matahari = derive2 { name="matahari"; version="0.1.3"; sha256="03mhn4qh1vcz2hr0mxp6gijwgrzvbpfb8dq7lqhchbk5gq5g3fnh"; depends=[clipr jsonlite purrr readr rlang rstudioapi tibble]; }; match2C = derive2 { name="match2C"; version="1.2.3"; sha256="1ccmva0qgks2r6ya39vvrk1dx8ixmqiy3p0iz8hxcg5qin2pfzgi"; depends=[ggplot2 mvnfast rcbalance Rcpp]; }; - matchMulti = derive2 { name="matchMulti"; version="1.1.10"; sha256="1cbxgqx36f19lccd9qjrq3zq3ghqbfjb5pim40k2aykpqp6wmqba"; depends=[coin dplyr Hmisc MASS mvtnorm plyr rcbsubset rlang sandwich tidyr weights]; }; + matchMulti = derive2 { name="matchMulti"; version="1.1.11"; sha256="070cp69snxg1z6b059h4ii9r3nh6b1j4l31j4ixfg1c9hzpb8s15"; depends=[coin dplyr magrittr MASS mvtnorm plyr rcbsubset rlang sandwich weights]; }; matchbook = derive2 { name="matchbook"; version="1.0.7"; sha256="0xfqg8z2zkn215kqmjjkqdwrgsk7cn4jdpxfgd6razhcbvflg48j"; depends=[]; }; matchingMarkets = derive2 { name="matchingMarkets"; version="1.0-2"; sha256="1jj5hzxiivqinkpddmkqdxgi83jm6blann9wgv4g8prn3lvp0i85"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; }; matchingR = derive2 { name="matchingR"; version="1.3.3"; sha256="1wr1faaixn5scx2c8g2jfvfm489k0ah9isza67gz0db8knja9nig"; depends=[Rcpp RcppArmadillo]; }; @@ -12029,16 +12099,16 @@ in with self; { mathjaxr = derive2 { name="mathjaxr"; version="1.6-0"; sha256="0yf1sfkb2kjsplipl2v4k2gp20li9xzsynclg228sy0v243pdi7c"; depends=[]; }; mathpix = derive2 { name="mathpix"; version="0.5.0"; sha256="0imd2rxzh3zndl3laa1fx3m90zr97l02y42s7dhi6b0g2m2lirz4"; depends=[base64enc httr magick purrr rstudioapi texPreview]; }; matlab = derive2 { name="matlab"; version="1.0.4"; sha256="1shnq9z7n8yp3l457swrhm3p3nm0j2q4xb9bbxblli030wia520r"; depends=[]; }; - matlab2r = derive2 { name="matlab2r"; version="1.2.0"; sha256="12g32495mzp4wpqm2hc4ayp55i89ksqwyz0vnws8jdjk6zrrd6gz"; depends=[styler]; }; + matlab2r = derive2 { name="matlab2r"; version="1.3.0"; sha256="1g99wv3ngfbc7c8lnx0pwzf4n7zmx2zb9nv50byz0avax99y4dwj"; depends=[styler]; }; matlabr = derive2 { name="matlabr"; version="1.5.2"; sha256="1ba6cajnzldb1gmn7rf0b198h6mdh58r3frm0z0cmvbinspwz3x7"; depends=[stringr]; }; - matlib = derive2 { name="matlib"; version="0.9.5"; sha256="0m03zygd43r0z7cldiwsc91p1xyni6pdvwm8pz4jcg5bmqasfg0w"; depends=[car MASS rgl xtable]; }; + matlib = derive2 { name="matlib"; version="0.9.6"; sha256="0sm1mm5m242j472hddj9nzfyf235i7w8qxhcbgqwxf35fvdmah2h"; depends=[car MASS rgl xtable]; }; matman = derive2 { name="matman"; version="1.1.3"; sha256="0mwxxqqlg6yydc06hrjqk5ly686s21w5i5z40axxwkmpzyz84sqv"; depends=[data_table dplyr DT forecast lubridate parsedate plotly shiny shinydashboard shinyWidgets tidyr tidyselect]; }; matpow = derive2 { name="matpow"; version="0.1.2"; sha256="1gjrq9bs94xqyms6sfyxp00f0x2gv4dfqcsz29ficzgl4iapns95"; depends=[]; }; matricks = derive2 { name="matricks"; version="0.8.2"; sha256="0ik61jxd4hpw149dbbmis3wsfsim60mw9d0qjwh047qfg6sm1vsc"; depends=[ggplot2 Rcpp reshape2 rlang]; }; matrixLaplacian = derive2 { name="matrixLaplacian"; version="1.0"; sha256="1ixqdv3sz3sc79wn3vqhlq79j7x7cvl878m5hgvbcg6klfvlmmci"; depends=[scatterplot3d]; }; matrixNormal = derive2 { name="matrixNormal"; version="0.1.1"; sha256="0l89s33sjxjb7dyzfny6v7cjw8qmlps4z1bjmlzvcka4qbn6kc2z"; depends=[mvtnorm]; }; matrixProfile = derive2 { name="matrixProfile"; version="0.5.0"; sha256="0nd54k878xf7hzwxawh03c3na4jfvb68afarkwrmmffjlp3i8a9g"; depends=[fftw signal TTR zoo]; }; - matrixStats = derive2 { name="matrixStats"; version="0.62.0"; sha256="1jjfsi5vzx6js7phlnd3v64fd05fg0jyz8iq5pivy36jdmmh3ql5"; depends=[]; }; + matrixStats = derive2 { name="matrixStats"; version="0.63.0"; sha256="0pqz6mn5l7inh464yj45i6rf8ycab0zdvvjczwsv0bkl442bc060"; depends=[]; }; matrixStrucTest = derive2 { name="matrixStrucTest"; version="1.0.0"; sha256="06la9xmpi1viyjml4m1akbna3lwkz5lnq95v1nnf73i9zpfwz03k"; depends=[]; }; matrixTests = derive2 { name="matrixTests"; version="0.1.9.1"; sha256="1fixzjbrwm0shyvkishff6l5yanqnvhcgbidkw8fsalf3jwwc0ix"; depends=[matrixStats]; }; matrixcalc = derive2 { name="matrixcalc"; version="1.0-6"; sha256="09pk0ym6qzribxc6v18cpb6478i4r4kzxpkljjbb3n323zqx5iqb"; depends=[]; }; @@ -12078,16 +12148,15 @@ in with self; { mbrglm = derive2 { name="mbrglm"; version="0.0.1"; sha256="0yxq1xk8qy5hpiqqldyrs78lp4ggdp5lj2lmh8rqq1xvsfr6nrh4"; depends=[enrichwith nleqslv]; }; mbsts = derive2 { name="mbsts"; version="2.2"; sha256="07sizvj627vhkpkg044593gh8lsmhw7ahqavmrindzjlfwwlfidb"; depends=[BBmisc ggplot2 KFAS MASS Matrix matrixStats MCMCpack pscl reshape2]; }; mc_heterogeneity = derive2 { name="mc.heterogeneity"; version="0.1.2"; sha256="1nsqbc4cqyg6g3s6ish3fbhqygy1kay68smbv0rhivp0x0dv7can"; depends=[boot_heterogeneity metafor]; }; - mc2d = derive2 { name="mc2d"; version="0.1-21"; sha256="1vp7xai7pk260053g2g23wzwn6l1pai0n4vjwjg1j8qd6d95j8mi"; depends=[mvtnorm]; }; + mc2d = derive2 { name="mc2d"; version="0.1-22"; sha256="0811c8jjlbcnn6rlk8g1ny9gk3bll1229j3sdvwrnm87g2awvgdx"; depends=[mvtnorm]; }; mcBFtest = derive2 { name="mcBFtest"; version="0.1.0"; sha256="1fmn9pzbvk508ljspksppqxdvggx5bvipgs54nz9605y6p8zzmi5"; depends=[MASS]; }; mcMST = derive2 { name="mcMST"; version="1.0.1"; sha256="18ka76g9pgpycaw0hl8vxpabd8584q1l5d3xmrzy1zwincsg7vgs"; depends=[BBmisc checkmate ecr ggplot2 gtools lhs parallelMap reshape2 vegan]; }; mcStats = derive2 { name="mcStats"; version="0.1.2"; sha256="1r8dxdfcvznl2968xr6fbany1rh7wq5z1p7fhdf5g4b5l28j8pf9"; depends=[dplyr ggplot2 ggthemes gridExtra magrittr rlang tidyr]; }; mcb = derive2 { name="mcb"; version="0.1.15"; sha256="0k986m2vyvfqxw3jmlyvf6r5bq68y92fymy03lffq5lmiqhypixj"; depends=[ggplot2 glmnet lars leaps MASS ncvreg reshape2 smoothmest]; }; - mcbette = derive2 { name="mcbette"; version="1.15"; sha256="0wilbz4zwjnzxfa3nail10a8y1cjq1myb2lqyj01k8s5kpwb0isq"; depends=[babette beastier beautier curl devtools mauricer Rmpfr testit txtplot]; }; mcbiopi = derive2 { name="mcbiopi"; version="1.1.6"; sha256="1caw2sy15hw2zw0bdynwnsa7hn4rly34hlxp06nwm5lssz8l2597"; depends=[]; }; mcboost = derive2 { name="mcboost"; version="0.4.2"; sha256="0748av1dy6fag33slhi24km17qpi7y6cydl1vmdhxz96902lcr5r"; depends=[backports checkmate data_table glmnet mlr3 mlr3misc mlr3pipelines R6 rmarkdown rpart]; }; mcca = derive2 { name="mcca"; version="0.7.0"; sha256="01nm0plgkik241qhd06v1vs84lf7agc0vkxa27cpr5qlfl4cm4zb"; depends=[caret e1071 MASS nnet pROC rgl rpart]; }; - mccca = derive2 { name="mccca"; version="0.1.1"; sha256="1rvyn4b72xa45r95jjl80b3wiq152hh3pndwbngmq1078wl84xbk"; depends=[ggplot2 magic RColorBrewer stringr wordcloud]; }; + mccca = derive2 { name="mccca"; version="1.1.0"; sha256="0iw4pgypdhxwny93b80y69kwwpqvmbv71qa05jlhylx7lqbsnbyb"; depends=[ggplot2 magic RColorBrewer Rcpp RcppArmadillo stringr wordcloud]; }; mccf1 = derive2 { name="mccf1"; version="1.1"; sha256="023pvjfc1iv7hac3gz5rakg6ljs92j0qfm4givad5iiwv5n4k3zr"; depends=[ggplot2 ROCR]; }; mcclust = derive2 { name="mcclust"; version="1.0.1"; sha256="1mifgrm2canfcrln9rspqwws1f61vrana5m4lap54lys0kiyrrqq"; depends=[lpSolve]; }; mccmeiv = derive2 { name="mccmeiv"; version="2.1"; sha256="1lkghvvwxvg474p37h1mpbackr5qmy05qkx8yiq4x066wrfq1w1i"; depends=[MASS numDeriv survival]; }; @@ -12099,11 +12168,11 @@ in with self; { mclcar = derive2 { name="mclcar"; version="0.2-0"; sha256="0zgf7ha22586nh1yzdnhz1rzrqkn6yzr12qva9ag297ry4z4bn5y"; depends=[fields maxLik nleqslv rsm spam spatialreg spdep]; }; mclm = derive2 { name="mclm"; version="0.2.7"; sha256="1vpg6xsa8im60ld5mlm6yhf2prs6kmwn0sn12b9g8v27dgw3h0iq"; depends=[ca crayon dplyr Rcpp readr stringi stringr tibble tm xml2 yaml]; }; mclogit = derive2 { name="mclogit"; version="0.9.6"; sha256="0sbglgak6jhhpx65jnj59hbpvzs8qjsdjc4w02z0m5j9hrnmzp4s"; depends=[Matrix memisc]; }; - mclust = derive2 { name="mclust"; version="5.4.10"; sha256="0wh6nsbma4b0wsmqm2ynbznl2wlwdly4vg583f6z0zd1qkrvn6ra"; depends=[]; }; - mclustAddons = derive2 { name="mclustAddons"; version="0.6"; sha256="1sk1inwln76k7ygja9sdzil1i1q8yqnvyd0l0vm81ih66ilivbzb"; depends=[foreach iterators mclust Rcpp RcppArmadillo]; }; + mclust = derive2 { name="mclust"; version="6.0.0"; sha256="0ahj5161lmid0gxyw6vidd4ig50l1374iisn9970zvx1rdp30z6y"; depends=[]; }; mclustcomp = derive2 { name="mclustcomp"; version="0.3.3"; sha256="1kxrms77m7n9lv32771zvwg82xqh5kx8al6f0bknsj8idq8aqbh3"; depends=[Rcpp RcppArmadillo Rdpack]; }; mcmc = derive2 { name="mcmc"; version="0.9-7"; sha256="0q42m8ab7b6bxhns494ksjdss5f3c5m2jjfdlfj6fk1nz7ax7i5p"; depends=[]; }; - mcmcOutput = derive2 { name="mcmcOutput"; version="0.1.1"; sha256="0nw33xb7x695g8i91hfj2apgywbyzf2k587drzridqnfmbm26pni"; depends=[coda HDInterval MASS]; }; + mcmcOutput = derive2 { name="mcmcOutput"; version="0.1.3"; sha256="1jw4wyppzlnxaa3iahbwx4gxs3zvppy980rc92dvy18y2sr5138v"; depends=[coda HDInterval MASS]; }; + mcmcabn = derive2 { name="mcmcabn"; version="0.5"; sha256="0mr6zqsqbd9pasdz5sz7capirvfz0gws2v0i914h6pxx3blws7m5"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; }; mcmcderive = derive2 { name="mcmcderive"; version="0.1.2"; sha256="0v89nyvr2d57zvjy9qq6drqb48s4n88hb65pima1gx4aqb479yfh"; depends=[abind chk extras mcmcr nlist purrr universals]; }; mcmcensemble = derive2 { name="mcmcensemble"; version="3.0.0"; sha256="1yf8mm0nmw0x89pj3is5rv3arcfbxvkfh8bip1sprcqzsrixa0s8"; depends=[future_apply progressr]; }; mcmcplots = derive2 { name="mcmcplots"; version="0.4.3"; sha256="0187z79gmvcrwqybxh3ckhcrqi0nqhvcvlczgxfkpq95y5czprdq"; depends=[coda colorspace denstrip sfsmisc]; }; @@ -12116,10 +12185,10 @@ in with self; { mcp = derive2 { name="mcp"; version="0.3.2"; sha256="0vqn0lb7nc5hp2ls2h17ybldxrqj6l1hd4pk5pr4d22yyidlvx96"; depends=[bayesplot coda dplyr future future_apply ggplot2 loo magrittr patchwork rjags rlang stringr tibble tidybayes tidyr tidyselect]; }; mcparallelDo = derive2 { name="mcparallelDo"; version="1.1.0"; sha256="1ivh0d4f7ks6xwcjywk62h1zhr7h5bbhzpisky7973wi4g8vipbn"; depends=[checkmate R_utils R6]; }; mcprofile = derive2 { name="mcprofile"; version="1.0-1"; sha256="118n3pxzjm4j9y09d1n2hw7pm0b8b0m8mnm5v9kq76vignklh75l"; depends=[ggplot2 mvtnorm quadprog]; }; - mcr = derive2 { name="mcr"; version="1.3.0"; sha256="066hj3kpj252izq36a0m6a54kqybg52l7pxzaw1hjxx6yyr90aiv"; depends=[robslopes]; }; + mcr = derive2 { name="mcr"; version="1.3.1"; sha256="0ybhskszzs05m0ql231jj7c7039dwmghnq4gfzp2ww6vj1agshpl"; depends=[robslopes]; }; mcreplicate = derive2 { name="mcreplicate"; version="0.1.2"; sha256="12pmfp75sc00cdrkx4xniq74qqx3y67qxwdrrbp2mf562pdn2gmn"; depends=[]; }; mctest = derive2 { name="mctest"; version="1.3.1"; sha256="1d248r9ifwl1xhvka6z69l943rvbq7s7ag6vqp9lljkcybvg75f2"; depends=[]; }; - mctq = derive2 { name="mctq"; version="0.3.0"; sha256="09wdikzwfln7xmp7lsv58pzpwi08nx7srhsv9fjf40f6y39dvqv3"; depends=[checkmate cli dplyr hms lifecycle lubridate]; }; + mctq = derive2 { name="mctq"; version="0.3.1"; sha256="0ylk0bsgfs34b6213qsb1hrjfaqxnh6rz6in37l0xg00sqkl3ab2"; depends=[checkmate cli dplyr hms lifecycle lubridate]; }; mcunit = derive2 { name="mcunit"; version="0.3.2"; sha256="16nnm50g87iaf058b1w5w5hphx99xplczndcbv1356f2gs2gfy6l"; depends=[Rdpack rlang simctest testthat]; }; mcvis = derive2 { name="mcvis"; version="1.0.8"; sha256="0dc7jwdfzyn6x785lbwikpql96b3gh9fhb65fv4sk9ib28b2kpmy"; depends=[assertthat dplyr ggplot2 igraph magrittr psych purrr reshape2 rlang shiny]; }; mcwr = derive2 { name="mcwr"; version="1.0.0"; sha256="1aqmrxjmllq1waw3pzmwhqd07q02n1h1g6c0qi1fvay4xz0rwgik"; depends=[]; }; @@ -12127,7 +12196,7 @@ in with self; { md_log = derive2 { name="md.log"; version="0.2.0"; sha256="1k0l3imx1jdlf6fks7x8q8lg2l4090fq069h5x4i0nwq71sfslj0"; depends=[futile_logger]; }; mda = derive2 { name="mda"; version="0.5-3"; sha256="0qw4scc2w7jmnxssj5w2mdxb9rrl4dscqn54gplzm1gk2yf419mx"; depends=[class]; }; mdapack = derive2 { name="mdapack"; version="0.0.2"; sha256="1dfcjh8yax06m890ql0kc2rn539z4xbhw7bq9a8cbrm7jnkq03iq"; depends=[covr curl devtools FactoMineR ggplot2 gh git2r httr knitr mice openssl pkgbuild reshape2 rlang rmarkdown roxygen2 spelling testthat VIM]; }; - mdatools = derive2 { name="mdatools"; version="0.13.0"; sha256="0mirlj79g2zy58dgg1yy2f1m5yr8w4rvf4hgs7q9vl50fiypv5hp"; depends=[Matrix]; }; + mdatools = derive2 { name="mdatools"; version="0.13.1"; sha256="19l51va1fl0cx18ml6n1kfgbc8in9isb1mzhl84gshs9f6hnrmzh"; depends=[Matrix]; }; mdbr = derive2 { name="mdbr"; version="0.1.2"; sha256="1c33v2dqz1jjh730p486bi07h9m9clpcfrbvhbvwb8fslqxg76qd"; depends=[readr]; }; mde = derive2 { name="mde"; version="0.3.2"; sha256="121bzypndsx4abls1f7rjrvg98rqkb155vd5aiql8vi1lwgzy9jl"; depends=[dplyr tidyr]; }; mded = derive2 { name="mded"; version="0.1-2"; sha256="1j8fcz5yc70p9qd9l010xj1b625scdps8z1pqh75b45p2hiqbhlc"; depends=[]; }; @@ -12174,7 +12243,7 @@ in with self; { mefa4 = derive2 { name="mefa4"; version="0.3-9"; sha256="0g46z14r7d8wkyxsp58i6007r9jljf269snrbachamy2wlmpc1g1"; depends=[Matrix]; }; meifly = derive2 { name="meifly"; version="0.3.1"; sha256="0pgmxa4g16zhx3jx5g56h2s1f4cr4bkz3bp7404dm2729083rvjx"; depends=[leaps MASS plyr]; }; mekko = derive2 { name="mekko"; version="0.1.0"; sha256="09y50k4r4mnx351a5zhkqg9s2xyl3d149dhmfy2z6hzm5yg2ajyi"; depends=[ggplot2]; }; - melt = derive2 { name="melt"; version="1.8.0"; sha256="0gfg09idkqvlvahxipabcipwqv6f11c4wcw9i0p1c66j70b5dcy3"; depends=[BH dqrng Rcpp RcppEigen]; }; + melt = derive2 { name="melt"; version="1.9.0"; sha256="04k8w06siskwn8g2x9p6p8gxl4l9mjmrk759czglpfb1h6lb953z"; depends=[BH dqrng Rcpp RcppEigen]; }; meltr = derive2 { name="meltr"; version="1.0.1"; sha256="0rg6frch51ydigsas6ycfhkgd0jldi95paq6gmja6rcq6vlwnhgj"; depends=[cli cpp11 R6 rlang tibble]; }; meltt = derive2 { name="meltt"; version="0.4.3"; sha256="1j2iz05xr9ddj9pk2yw7j7kjfr9rxmxkk123c6336fqdm14wvd21"; depends=[dplyr ggplot2 leaflet plyr Rcpp RcppArmadillo reticulate shiny shinyjs tibble tidyr]; }; mem = derive2 { name="mem"; version="2.17"; sha256="0nlw0mf5dhp9x5ymc33a600i199c5g3qi80g5jqacp0m0q6s2b8n"; depends=[boot dplyr EnvStats ggplot2 mclust purrr RColorBrewer RcppRoll sm tidyr]; }; @@ -12191,7 +12260,7 @@ in with self; { memoise = derive2 { name="memoise"; version="2.0.1"; sha256="1srdzv2bp0splislrabmf1sfbqfi3hn189nq7kxhgjn8k3p38l7q"; depends=[cachem rlang]; }; memor = derive2 { name="memor"; version="0.2.3"; sha256="1b3rjh121in7gi6khbhh2d1r0998a24ifcg6hpv8cdksl6lhm330"; depends=[knitr rmarkdown yaml]; }; memoria = derive2 { name="memoria"; version="1.0.0"; sha256="05nx6xkgf1mkn1ajjizwp66xhn7ddbvgdnmkdbcl4s7sq456vczw"; depends=[cowplot ggplot2 HH ranger stringr tidyr viridis viridisLite zoo]; }; - memuse = derive2 { name="memuse"; version="4.2-1"; sha256="1wvwnjaaiv2647561z2b55dss35033ildx4kk8hzxfzgsjmdpsgm"; depends=[]; }; + memuse = derive2 { name="memuse"; version="4.2-2"; sha256="1rdp8wi9sd03qdak7mifvdc1szgk0fdzmhbikdfsza8xshm2pp33"; depends=[]; }; merDeriv = derive2 { name="merDeriv"; version="0.2-4"; sha256="1piswi4l7ri3251shmanhygipmsw8zg701jqd0am1s76kj16l9cc"; depends=[lavaan lme4 Matrix nonnest2 numDeriv sandwich]; }; merTools = derive2 { name="merTools"; version="0.5.2"; sha256="1ka9aa3fgs1kqfqhi1sz6v6g5mbbbzxyb7c0n8s981g8d04vsi00"; depends=[abind arm blme broom_mixed dplyr foreach ggplot2 lme4 mvtnorm shiny]; }; mergeTrees = derive2 { name="mergeTrees"; version="0.1.3"; sha256="17aqgfd1ky5zq6i9s1djvdqjdd8lzkblf0cdw82i9mpzfhcz1fav"; depends=[Rcpp]; }; @@ -12200,6 +12269,7 @@ in with self; { merror = derive2 { name="merror"; version="2.0.2"; sha256="13d9r5r83zai8jnzxaz1ak40876aw20zbpr244gs55rvj5j7f87q"; depends=[]; }; meshed = derive2 { name="meshed"; version="0.2.3"; sha256="061q6b8603jbvlqkl6ddcmw1rgy53sqbxbsxhv218f7px392b1vf"; depends=[dplyr FNN glue magrittr Rcpp RcppArmadillo rlang]; }; messaging = derive2 { name="messaging"; version="0.1.0"; sha256="0q19cqp1zgh0yhk1ql0jqf414bhx6jwhkairq6wx2cmkli2g7k1y"; depends=[dplyr glue magrittr rlang stringr]; }; + messy_cats = derive2 { name="messy.cats"; version="1.0"; sha256="0znjp1wcrkpgm778z5iqw91bnk8vv0x04dpng8pcmh0igsmc3j68"; depends=[dplyr gt rapportools stringdist stringr varhandle]; }; messydates = derive2 { name="messydates"; version="0.3.1"; sha256="125jb6sv00i1f89p12dy0z4zfynlz829gvxs7rlvhlyaznj9csvk"; depends=[dplyr lubridate purrr stringr tibble]; }; metR = derive2 { name="metR"; version="0.13.0"; sha256="0cffi32glgnmjan2xy4cb836qf3nj6k2mjkni6mqlblz4gh128w1"; depends=[checkmate data_table digest Formula formula_tools ggplot2 gtable isoband lubridate memoise plyr purrr scales sp stringr]; }; metRology = derive2 { name="metRology"; version="0.9-28-1"; sha256="1syjwblyd18myxrs0hx4m91fgb6zs3r4g7w701j2f2pw6j9mvz0y"; depends=[MASS numDeriv robustbase]; }; @@ -12221,7 +12291,6 @@ in with self; { metaSurvival = derive2 { name="metaSurvival"; version="0.1.0"; sha256="05f103fi287y64gys73a55snw54bnph69q8dykfii10dykd44g0y"; depends=[mvtnorm survival]; }; metaboData = derive2 { name="metaboData"; version="0.6.3"; sha256="0a8jz7q0a5dri5p2qyw0ah0j4w0xjyfj6gkh2gcsazac1d5fl02i"; depends=[dplyr fs magrittr piggyback purrr readr rlang stringr tibble yaml]; }; metabolic = derive2 { name="metabolic"; version="0.1.1"; sha256="0rq4yi2r0l0ghn22pj2gmmhwqjykaxznbd185fjr5r1gzvlh45rv"; depends=[cli dplyr forcats ggfittext ggimage ggplot2 glue magrittr meta patchwork purrr rmarkdown scales stringr tibble tidyr usethis]; }; - metabolighteR = derive2 { name="metabolighteR"; version="0.1.3"; sha256="0ip7cy40jndcwp8yc42pjzklv35dkxjd3pdlpwk0r0jngp7nbjim"; depends=[crayon dplyr httr magrittr purrr]; }; metabolomicsR = derive2 { name="metabolomicsR"; version="1.0.0"; sha256="0b12nddczh8i6hnv679pa521yps26n98j2cnai8s67xiw5ir0y5v"; depends=[data_table ggplot2 plotROC]; }; metabup = derive2 { name="metabup"; version="0.1.3"; sha256="1lwndn46bayw6jzxxpd8hywnzxydiz0nlm33nxr855035rmv231k"; depends=[ggplot2 partitions]; }; metacart = derive2 { name="metacart"; version="2.0-3"; sha256="1wim72fvhx6cyc16c9gl8cwzbhlpzilk7q8gi4jnzzazqmc1kb5n"; depends=[ggplot2 gridExtra Rcpp rpart]; }; @@ -12229,7 +12298,7 @@ in with self; { metacom = derive2 { name="metacom"; version="1.5.3"; sha256="0c0gzn28cl2sl52wx2n36jm9c18d9s3yqjyx88kgbmd9069z1nvk"; depends=[vegan]; }; metaconfoundr = derive2 { name="metaconfoundr"; version="0.1.1"; sha256="13pm4hy68b3h6x8i3kbvgvprn6k9g5nn3agiplnqlng908mmlrzk"; depends=[dplyr forcats ggplot2 magrittr purrr rlang shiny stringr tibble tidyr tidyselect]; }; metacor = derive2 { name="metacor"; version="1.0-2.1"; sha256="0y3z7jbhw5c2dbn9fx9wlw1311irjc2xvnm5hnaixbbj53qz24n0"; depends=[gsl rmeta]; }; - metacore = derive2 { name="metacore"; version="0.1.0"; sha256="1m7mri6mkk39m7311igvfv31v4fa8m38cljbzlmrl2rjmw544fnj"; depends=[dplyr magrittr purrr R6 readxl rlang stringr tibble tidyr tidyselect xml2]; }; + metacore = derive2 { name="metacore"; version="0.1.1"; sha256="0hcaf4fq5z1nv910yvs5gav9scfwrm0b60n80ycsspkimmg86cmj"; depends=[dplyr magrittr purrr R6 readxl rlang stringr tibble tidyr tidyselect xml2]; }; metadat = derive2 { name="metadat"; version="1.2-0"; sha256="1f7mb3pw5d0akr09jjva06ay223izhpzbr21bapnw99x1kiybk7h"; depends=[mathjaxr]; }; metadynminer = derive2 { name="metadynminer"; version="0.1.7"; sha256="0ch86qqs3872d28c8wrs24ryg2xahqsmndmzjc3z6qznkrq1adzh"; depends=[Rcpp]; }; metadynminer3d = derive2 { name="metadynminer3d"; version="0.0.2"; sha256="1y1csfp57qrv394hj96yr5v3brxw7v0a07k2pg7ypw08gshvgqjm"; depends=[metadynminer misc3d Rcpp rgl]; }; @@ -12247,6 +12316,7 @@ in with self; { metamicrobiomeR = derive2 { name="metamicrobiomeR"; version="1.2"; sha256="0fgdjy2s47pqmb9x79a4sf0kn4hbc49rd41jnzw0d3ll1l9kwy7f"; depends=[compositions dplyr gamlss gdata ggplot2 gridExtra lme4 lmerTest matrixStats meta plyr tidyr zCompositions]; }; metamisc = derive2 { name="metamisc"; version="0.4.0"; sha256="12ydvkpni7a7v0x8lfknsy4c6hmgjqri3l33m4fwsai3rhnq6hsa"; depends=[dplyr ggplot2 lme4 metafor mvtnorm plyr pROC]; }; metan = derive2 { name="metan"; version="1.17.0"; sha256="1d988svhwcg02qwag19265jvhrpnicgzzfxywh0w6rxy2w11394s"; depends=[dplyr GGally ggforce ggplot2 ggrepel lme4 lmerTest magrittr mathjaxr patchwork purrr rlang tibble tidyr tidyselect]; }; + metanetwork = derive2 { name="metanetwork"; version="0.7.0"; sha256="0rlnalmfmiih154zq6rk4sq12y7nr8fn1ws8mrlryy04gznz6igw"; depends=[dplyr GGally ggimage ggplot2 igraph intergraph magrittr Matrix network RColorBrewer rlang sna visNetwork]; }; metansue = derive2 { name="metansue"; version="2.5"; sha256="098f3jfqxraf86p6ciqpryqs1vwbhsmy3wngqj50d5ndf302qxmc"; depends=[]; }; metap = derive2 { name="metap"; version="1.8"; sha256="0asmypxfxly4xmcjf3yzid5zqlzg88z0brij2splfk4avsl035gf"; depends=[lattice mathjaxr mutoss qqconf Rdpack TFisher]; }; metapack = derive2 { name="metapack"; version="0.2.0"; sha256="0npyjj93kk8zc2xcsyfm3v09my89zw9f1smrnl4kpcpwyk3g1q6a"; depends=[BH Formula ggplot2 gridExtra Rcpp RcppArmadillo RcppProgress]; }; @@ -12272,19 +12342,19 @@ in with self; { meteor = derive2 { name="meteor"; version="0.3-4"; sha256="01009d9wpxybig4n82m48hqqg1k4x4shcjxfy8y0kk7cgfdb4naw"; depends=[Rcpp]; }; meteorits = derive2 { name="meteorits"; version="0.1.1"; sha256="1vk8pbhfc5mbkbpw7ml81gx9i8187xp3vx36pbyyhjbrpy6gqabx"; depends=[MASS pracma Rcpp RcppArmadillo]; }; meteospain = derive2 { name="meteospain"; version="0.0.4"; sha256="0a4r86qqq2qxms9dilj7mhz1hgrc6yl7b7mi60wky0n8mjfw0ciz"; depends=[assertthat cachem crayon curl dplyr glue httr jsonlite lubridate magrittr memoise purrr rlang sf stringr tidyr units vctrs xml2]; }; - metevalue = derive2 { name="metevalue"; version="0.1.10"; sha256="1kwcxrp077zghpc04aykm0zcijdbvq00izf7dilk4s6llgmcacq2"; depends=[dplyr psych sqldf]; }; + metevalue = derive2 { name="metevalue"; version="0.1.13"; sha256="1xhzxw0wji7iiql7cs72lzvl5d52hjidxa0j72lkyzwdyq951q8d"; depends=[dplyr psych sqldf]; }; methcon5 = derive2 { name="methcon5"; version="0.1.0"; sha256="08xsi6j65izxqcrlh37f2d7m3pwna1v6zvdv96mqylsjqgqmbk5x"; depends=[dplyr magrittr purrr rlang]; }; metools = derive2 { name="metools"; version="1.0.0"; sha256="05l49ifx2nnlbdxh2qhdb0islf95fc67720rm5in7mrlida4khnq"; depends=[ggplot2 lubridate scales stringr tibble tidyr]; }; metrica = derive2 { name="metrica"; version="2.0.1"; sha256="1crxa05gyxl6g5h4vi930alg4n688nlw1nmyg3jv8if7yszldva2"; depends=[DBI dplyr energy ggplot2 ggpp minerva rlang RSQLite tidyr]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; - metrix = derive2 { name="metrix"; version="1.0.0"; sha256="121g2vflwrrix1jjx26g4jxd6chdw6wghyp2adyvky45zckc9zi7"; depends=[Matrix stringr vegan]; }; + metrix = derive2 { name="metrix"; version="1.1.0"; sha256="0ixp868pag05a6h4l8q4x55w0dg4xki4q6klfi9dzx82knzb7s9l"; depends=[Matrix stringr vegan]; }; metro = derive2 { name="metro"; version="0.9.1"; sha256="0agmwvbwhpn5nzzkyz20pspbv6i80i636fhf9sqydgl1fskknrf2"; depends=[geodist hms httr jsonlite tibble]; }; metropolis = derive2 { name="metropolis"; version="0.1.8"; sha256="031fcy0v13bvy7gg26988fvpqdsfndx2rynkhb1jvirnrf0fngy4"; depends=[coda]; }; mets = derive2 { name="mets"; version="1.3.1"; sha256="0kzmbwhziknk4djql88kvanb0pncnxq0c6b7rsfd1z7c0c8kpyv0"; depends=[lava mvtnorm numDeriv Rcpp RcppArmadillo survival timereg]; }; metsyn = derive2 { name="metsyn"; version="0.1.2"; sha256="0iwp0nz07yd33qd93fjblmvik1l1xkv6rkccn3054zs2bkrzjq4f"; depends=[foreach readr stringr tibble]; }; mev = derive2 { name="mev"; version="1.14"; sha256="0pxjvvmrhjrdcznknncyhjghscajkw0q0y4r3ai22nkx70gln6bv"; depends=[alabama evd nleqslv nloptr Rcpp RcppArmadillo]; }; mewAvg = derive2 { name="mewAvg"; version="0.3.1"; sha256="1pnjzfq4rdjjlqp1mxxlpkhkfgq1nym8pgaqrvpm76zw4xnx7p7m"; depends=[]; }; - mexhaz = derive2 { name="mexhaz"; version="2.3"; sha256="14zfk9wnb062zvqj1szkas02s5pvw0i7gc618x5dwddffvl6kpfi"; depends=[lamW MASS numDeriv statmod survival]; }; + mexhaz = derive2 { name="mexhaz"; version="2.4"; sha256="1dh92gawq6hdq0594m5ayzrafxi2mz3362dx3dgvdmznwcyqvsbz"; depends=[lamW MASS numDeriv statmod survival]; }; mexicolors = derive2 { name="mexicolors"; version="0.2.0"; sha256="0vbhwaq19hqd63qjybssgqxkawjr6vnar6k0nrb583hh1q9hjyg2"; depends=[]; }; mfGARCH = derive2 { name="mfGARCH"; version="0.2.1"; sha256="1pcabijwhdxhdlrdjvi2zl8la939igsdy3j1yv0ic8wvkpw1sh4x"; depends=[maxLik numDeriv Rcpp zoo]; }; mfaces = derive2 { name="mfaces"; version="0.1-4"; sha256="0svvnpka2y1p21gvdyc7csw6m0g3kziszw2ll9bq5gpcnl69qk4n"; depends=[face Matrix matrixcalc mgcv]; }; @@ -12293,11 +12363,10 @@ in with self; { mfp = derive2 { name="mfp"; version="1.5.2.2"; sha256="1w61hj0dizgcpa3qv9ks9lvvbic7xp2cnip4klkdb9ss63vws8bv"; depends=[survival]; }; mfpp = derive2 { name="mfpp"; version="0.0.4"; sha256="0n752nm102cxscbi76hy1bh8kqd1svwknkj6l63jq5zd1z63a2yg"; depends=[genalg ggplot2 igraph nsga2R pracma reshape2 Rfast]; }; mfx = derive2 { name="mfx"; version="1.2-2"; sha256="04pwp67i4sn4rf497pgy6qifwvrcmwyxn8x5sn96fy8qyrdzjfhj"; depends=[betareg lmtest MASS sandwich]; }; - mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.2"; sha256="1k4c34srnckbh5kchzmm44l91ma9sw0gi4y225igs3cl79212q9c"; depends=[mvtnorm tseries]; }; + mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.5"; sha256="0i5f8xghdch9d1cvfgiq2pscpq53ms7ik7jk16gss8i0cx2d3m94"; depends=[mvtnorm tseries]; }; mgc = derive2 { name="mgc"; version="2.0.2"; sha256="1l9qs4nz1rn56qp569nh26yz3c7i4zh3r43c209zh7kvizpagx0i"; depends=[abind boot energy MASS raster]; }; mgcViz = derive2 { name="mgcViz"; version="0.1.9"; sha256="09n18ypjdwcca38i2v636ijgnzwalv7wh55z82a0pfrbzabiynn1"; depends=[gamm4 GGally ggplot2 gridExtra KernSmooth matrixStats mgcv miniUI plyr qgam shiny viridis]; }; mgcv = derive2 { name="mgcv"; version="1.8-41"; sha256="14769zs1sh1bz3c87hs4vhy2y9n28vglfqfrdgpysxdyw87h6yig"; depends=[Matrix nlme]; }; - mgee2 = derive2 { name="mgee2"; version="0.2"; sha256="1bhjajcjvm8brc92v6ij378i0d3vniip77m4pz7n02sgswj0w61a"; depends=[ggplot2 MASS]; }; mggd = derive2 { name="mggd"; version="1.0.2"; sha256="1za864qwchji90q6p56qrxbwgn73shl8yf4b6giq5wc63m41hn1w"; depends=[MASS rgl]; }; mglasso = derive2 { name="mglasso"; version="0.1.2"; sha256="1896fg1gdgah8vmikz2br6v0rslhhh2frffkjiy6fnw4qxa5zsv9"; depends=[corpcor ggplot2 ggrepel gridExtra Matrix R_utils reticulate rstudioapi]; }; mglmn = derive2 { name="mglmn"; version="0.1.0"; sha256="1g642hhs28q6x34xgrfrmmsb2jsn9zy4jxad0x5ai3px48zzdb4r"; depends=[mvabund snowfall]; }; @@ -12326,8 +12395,8 @@ in with self; { micEconSNQP = derive2 { name="micEconSNQP"; version="0.6-10"; sha256="0lrwa0h7xc8scb7rh1wq71srzbhnk174k2qk1jd4adqqr308bgzp"; depends=[MASS miscTools systemfit]; }; micar = derive2 { name="micar"; version="1.1.2"; sha256="1zx2x6r4m0ihwhjd2n4rmk9da7p9bpadk65h7mbb0rgvwrspkzf8"; depends=[httr jsonlite]; }; micd = derive2 { name="micd"; version="1.1.0"; sha256="07zq8g9nfhw4mdjp9cj8pg3nh68vd7wj6zxb3x9wn2wwmrssj6f9"; depends=[mice pcalg RBGL Rfast]; }; - mice = derive2 { name="mice"; version="3.14.0"; sha256="01fnfrr7adp29s5kic95r9q0rdznkz2pjmziyimnrqzyicyvfyzq"; depends=[broom cpp11 dplyr generics lattice Rcpp rlang tidyr withr]; }; - miceFast = derive2 { name="miceFast"; version="0.8.1"; sha256="01nxjh395wb1cs6h5drm9xy3ahxb4cybx7xhdjv6g5jqjv4229m6"; depends=[data_table Rcpp RcppArmadillo]; }; + mice = derive2 { name="mice"; version="3.15.0"; sha256="0yz88b40mpn24z40yfpxrkwrsxk362gwks3v5x69rkix1qkdsr1x"; depends=[broom cpp11 dplyr generics lattice Rcpp rlang tidyr]; }; + miceFast = derive2 { name="miceFast"; version="0.8.2"; sha256="0n4hi9f28mzc9h41g7y3nnkr5lq7npafk6ias17xsqw28agc95ir"; depends=[data_table Rcpp RcppArmadillo]; }; miceRanger = derive2 { name="miceRanger"; version="1.5.0"; sha256="0xm8fcvjf6pcfyyk1gnwfdac44q6b33i5byja9lqxy7vygbxmgxd"; depends=[corrplot crayon data_table DescTools FNN foreach ggplot2 ggpubr ranger]; }; miceadds = derive2 { name="miceadds"; version="3.15-21"; sha256="0ybjxny2v0dd357pk0a8rg3llm5qglr4q3jrgcjjxkxzl2m879bc"; depends=[mice mitools Rcpp RcppArmadillo]; }; miceafter = derive2 { name="miceafter"; version="0.5.0"; sha256="192widdnj4ahv2rp09jzzz68n0ycdplv24p50kqd3i6zqnr1cl0s"; depends=[car dplyr magrittr mice mitml mitools pROC purrr rlang rms stringr survival tibble tidyr]; }; @@ -12342,8 +12411,7 @@ in with self; { microbial = derive2 { name="microbial"; version="0.0.20"; sha256="1y5vhh4sq22c4wxb3c9rzj53niacn97vfg0484d9wkcjb179lc79"; depends=[broom DESeq2 dplyr edgeR ggplot2 ggpubr magrittr phangorn phyloseq plyr randomForest rlang rstatix S4Vectors SummarizedExperiment testthat tidyr vegan]; }; microclass = derive2 { name="microclass"; version="1.2"; sha256="0q6mn1hbi6nk29x2x5a1wcdqp06mjggbrpglk5i8pp4gkqlzhl8q"; depends=[dplyr microcontax microseq Rcpp RcppEigen RcppParallel rlang stringr tibble]; }; microcontax = derive2 { name="microcontax"; version="1.2"; sha256="004g979hyg0asbah7hxr445fidil4ibw1b8pqpjdbgmpm1qgvw7y"; depends=[microseq]; }; - microdemic = derive2 { name="microdemic"; version="0.6.0"; sha256="1w4zh0vagnar95l5b8cgmcvp8q7vk2iba5g8d8g2ywynqiqcx5fc"; depends=[crul data_table httpcode jsonlite tibble]; }; - microeco = derive2 { name="microeco"; version="0.12.0"; sha256="043jwk93621vry2rmmzjwyivpdip51q0j2yq41fb9qly0j84dj13"; depends=[ape data_table dplyr ggplot2 magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; + microeco = derive2 { name="microeco"; version="0.13.0"; sha256="06f53lyvv8r9bsvx5b0gx0jacwfjpiw2ys0g9b3r53xbx4vb1gkd"; depends=[ape data_table dplyr ggplot2 magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; microhaplot = derive2 { name="microhaplot"; version="1.0.1"; sha256="0g15g7d19yz11nn2g0h8h2m8k1cvmpryz72pnalgv5yi58md5l5i"; depends=[dplyr DT ggiraph ggplot2 gtools magrittr scales shiny shinyBS shinyWidgets tidyr]; }; micromap = derive2 { name="micromap"; version="1.9.5"; sha256="18y8m63k9l4dir8w1qbbi1g86506yajvi6qs0j1588575lak1l62"; depends=[ggplot2 maptools RColorBrewer rgdal sf sp]; }; micromapST = derive2 { name="micromapST"; version="2.0.1"; sha256="1pshb5w8v1j1ayff2b95fjcqj0ias5z2znhm6s9x1p38808l9rrk"; depends=[cleangeo labeling maptools pbapply RColorBrewer readxl rgdal rgeos rmapshaper sf sp spdep stringr writexl]; }; @@ -12360,9 +12428,10 @@ in with self; { midasr = derive2 { name="midasr"; version="0.8"; sha256="0mzyxf8q2wmbsiczkhhgigy7jmi8zr4w4a83f97va35vfhxi217k"; depends=[forecast Formula MASS Matrix numDeriv optimx quantreg sandwich texreg zoo]; }; midastouch = derive2 { name="midastouch"; version="1.3"; sha256="1pjzcf0hjfhr5p0la8pz1njw7bhfrcrzpqfsdqk2z5c6dbh4awzq"; depends=[]; }; midrangeMCP = derive2 { name="midrangeMCP"; version="3.1.1"; sha256="1yfwyglyxxk4i914m8n148cjydlcg7r16zl8acb1w8h963svirk9"; depends=[SMR writexl xtable]; }; + miesmuschel = derive2 { name="miesmuschel"; version="0.0.2"; sha256="1zk4yj62g47lkc0a6xixjkhspbngln6fnddm891y61pcki5zlqcd"; depends=[bbotk checkmate data_table lgr matrixStats mlr3misc paradox R6]; }; mifa = derive2 { name="mifa"; version="0.2.0"; sha256="1rj3ba746f8759gird0vpvyb4fl0z2ihccpiv3qkr3sc64wgplln"; depends=[checkmate dplyr mice]; }; migest = derive2 { name="migest"; version="2.0.3"; sha256="0v59yai9xs2yj17lvm7nmw7jzfgglilixwmwy9czi3z4bhb7gknl"; depends=[circlize dplyr forcats magrittr matrixStats migration_indices mipfp purrr stringr tibble tidyr]; }; - migraph = derive2 { name="migraph"; version="0.12.1"; sha256="1p81k4ifch10i60xz2b5rm360n2bzaj7dysw21ada93whgszj2f8"; depends=[BiocManager dplyr furrr future generics ggforce ggplot2 ggraph igraph network patchwork pillar purrr rlang sna tidygraph tidyr]; }; + migraph = derive2 { name="migraph"; version="0.13.0"; sha256="0xf9yr7mlw9xkb8jacchyf8j7670xhvzbgakvxc6bclyys9gp7rh"; depends=[BiocManager dplyr furrr future generics ggforce ggplot2 ggraph igraph network patchwork pillar purrr rlang sna tidygraph tidyr]; }; migrate = derive2 { name="migrate"; version="0.4.0"; sha256="0yf0c7gcn2q8sx0havhqaxk6z69bagfd58drpbqkkpsp62bnq875"; depends=[dplyr magrittr rlang tibble tidyr]; }; migration_indices = derive2 { name="migration.indices"; version="0.3.1"; sha256="198lxv6s1wc6j10ygbc4l2irmmv5448f9av9zsybnpijballx349"; depends=[calibrate]; }; migui = derive2 { name="migui"; version="1.3"; sha256="1y012la9vmchnlcigcciq878w9hlw8zgzp76b3h9b6fwhaa872pm"; depends=[arm gWidgets2 mi]; }; @@ -12393,10 +12462,11 @@ in with self; { minpack_lm = derive2 { name="minpack.lm"; version="1.2-2"; sha256="11yz6hk2r33571d16kq01cb1x6sgdzi6jmksqlrm8mr84l95c2f7"; depends=[]; }; minqa = derive2 { name="minqa"; version="1.2.5"; sha256="1gpli7f3piz3jqjj63a6bk9v1jlygjdaqqqvqsr083crj0imd0wv"; depends=[Rcpp]; }; minque = derive2 { name="minque"; version="2.0.0"; sha256="0pczdg22i3if048i64chzcpnv3ay8p0anmhwjmzm29577z0jgms8"; depends=[]; }; - minval = derive2 { name="minval"; version="0.8-2"; sha256="06anbb90c8wg0374ykmb6chcwrcdyi903jkbrmrv3kgx511l699z"; depends=[]; }; + minsample1 = derive2 { name="minsample1"; version="0.1.0"; sha256="13kmqxa3pbllv16fzn0v7msffsaar79y8xnvnbrcfhwa76031f8f"; depends=[]; }; + minsample2 = derive2 { name="minsample2"; version="0.1.0"; sha256="0q1rp6mdyhcp806a0m0sr4ldm5rj78wk2fljzylxfjs4c734lpbk"; depends=[]; }; mipfp = derive2 { name="mipfp"; version="3.2.1"; sha256="1gxazpg81vj5dywpb6jb29188jw28qil6pfygawa7znnjn3k5ca6"; depends=[cmm numDeriv Rsolnp]; }; mipplot = derive2 { name="mipplot"; version="0.3.1"; sha256="126arvxq6gmaiwk3n3p0slnb1mhs3qf993m4lx95nlmnv612ag66"; depends=[data_table dplyr ggplot2 readr readxl reshape reshape2 rlang shiny shiny_i18n shinyalert shinyWidgets showtext showtextdb stringr tidyr]; }; - mirai = derive2 { name="mirai"; version="0.7.0"; sha256="0jqvjxphalzchslzdq39d885kr923hg4bvwxd6chdsn2ii6w8aj6"; depends=[nanonext]; }; + mirai = derive2 { name="mirai"; version="0.7.1"; sha256="02qs2dncxmvfx0cm4fkm6qqvi6mw9zbmhxdcqzig8kspvvqhmfnr"; depends=[nanonext]; }; mirt = derive2 { name="mirt"; version="1.37.1"; sha256="0h6i6mlns696ak59p9blk498bpmyx8090hl5c59n46vznpz38cq6"; depends=[dcurver Deriv GPArotation gridExtra lattice Matrix mgcv pbapply Rcpp RcppArmadillo vegan]; }; mirtCAT = derive2 { name="mirtCAT"; version="1.12.2"; sha256="0xxbja9d1n9r633isa7jzz1b46ins97q18hvlq2p1dal1hzxxh16"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; mirtjml = derive2 { name="mirtjml"; version="1.4.0"; sha256="1zvm8acywpzi87lz0hpxmr8c9kyqkbx0490q3vlwxd90ffcdp9ml"; depends=[GPArotation Rcpp RcppArmadillo]; }; @@ -12405,7 +12475,7 @@ in with self; { misaem = derive2 { name="misaem"; version="1.0.1"; sha256="05m7k8mgbpkv5szislvf3q45pk5f8z54ibddhi8pkhwa9w00xkjk"; depends=[MASS mvtnorm norm]; }; misc3d = derive2 { name="misc3d"; version="0.9-1"; sha256="0r9x57s63kx9f6dgam2nhbziq8nrs9wd8pk7g76hds2kw46vnyx0"; depends=[]; }; miscF = derive2 { name="miscF"; version="0.1-5"; sha256="0g6wk2zxqq6j949hnbvwmfd72y25zjfbrfrfxsj21q84w41fgjkb"; depends=[MASS MCMCpack mvtnorm R2jags]; }; - miscFuncs = derive2 { name="miscFuncs"; version="1.5-2"; sha256="17vy9934ndd8wyhvnyixp2j7ckrksgyx2y8kgvryyp3xxw3bxsz7"; depends=[mvtnorm roxygen2]; }; + miscFuncs = derive2 { name="miscFuncs"; version="1.5-3"; sha256="09pprwqbwz8iiggjqvnv3m2mkiy26zncvs9rn0mba2wk0yfzq4py"; depends=[mvtnorm roxygen2]; }; miscIC = derive2 { name="miscIC"; version="0.1.0"; sha256="0pnwc3b318xxnmb7scrj4qkqlvqfyczspdg496kl0ixsiaafr1ad"; depends=[nnls]; }; miscTools = derive2 { name="miscTools"; version="0.6-26"; sha256="16pwfxpyl0zv3hjxx2kjchkg7p6kbj0s2rrpskj7rkhjr9imlg5y"; depends=[digest]; }; misclassGLM = derive2 { name="misclassGLM"; version="0.3.2"; sha256="1b344dy5fm45jkjrqcx16905n9x0iwihr73mq2m0qfq7ay87nsrh"; depends=[bigmemory foreach MASS Matrix mlogit numDeriv ucminf]; }; @@ -12451,6 +12521,7 @@ in with self; { mixdist = derive2 { name="mixdist"; version="0.5-5"; sha256="1wchhysd33xz395hq4wgd3zv1qc92pbiqxqd7g2v6m1pb0j8ma9g"; depends=[]; }; mixedCCA = derive2 { name="mixedCCA"; version="1.6.2"; sha256="07apl37kwj47w14jxsvwdiacnwd517zs3ff2c70fhb6ncbgp8adv"; depends=[fMultivar irlba latentcor MASS Matrix mnormt pcaPP Rcpp RcppArmadillo]; }; mixedClust = derive2 { name="mixedClust"; version="1.0.2"; sha256="10hysjsld58cv0xif01xw08r0alr8xsnbp931x59lb36yi9g6f0m"; depends=[fda Rcpp RcppArmadillo RcppProgress]; }; + mixedLSR = derive2 { name="mixedLSR"; version="0.1.0"; sha256="0a514w88k1lwcdmq7ginn4qmf0mdj747lhgxzx15nh0hp0xq26lc"; depends=[ggplot2 grpreg MASS purrr]; }; mixedMem = derive2 { name="mixedMem"; version="1.1.2"; sha256="1p0gplfcn663xp40dk0yg70qffn1fwa9gxv7bppflgm9wkn8g3l5"; depends=[BH gtools Rcpp RcppArmadillo]; }; mixedsde = derive2 { name="mixedsde"; version="5.0"; sha256="0ss1ng4nx91gxj85wxxfyh9ljxsj3ag6lsj1a5d2815p9jzl7dsv"; depends=[MASS moments plot3D sde]; }; mixexp = derive2 { name="mixexp"; version="1.2.7"; sha256="06bp8w9r6fxhnp2ga3hig7fbl2nsvfvwxggbfd7nfc60c91p80mq"; depends=[daewr lattice]; }; @@ -12459,17 +12530,18 @@ in with self; { mixl = derive2 { name="mixl"; version="1.3.3"; sha256="0vxvs6lvnkijhdy78lw19hp11ylf4afyg0v5xc5izbhwk3cp5nga"; depends=[maxLik numDeriv randtoolbox Rcpp readr sandwich stringr]; }; mixlm = derive2 { name="mixlm"; version="1.2.6"; sha256="1qccwiaqyvmpyklbbp6ay3xvln9wfizaxi6fjizzx2bjpng5043p"; depends=[car leaps multcomp pls pracma]; }; mixmeta = derive2 { name="mixmeta"; version="1.2.0"; sha256="093f6jjq0hc49k5kmjp17s2lv3swpssfxnra80bwv59ggav8w8d8"; depends=[]; }; + mixopt = derive2 { name="mixopt"; version="0.1.1"; sha256="0szqrlnnbq152343dic54rjj8rafrnwci1xfjy014q1nwjxz0wfd"; depends=[]; }; mixpoissonreg = derive2 { name="mixpoissonreg"; version="1.0.0"; sha256="1pk45p96kwl3gvi5523vm824s1bb5aqpn9qqpqy8kjy2pd2a4k32"; depends=[dplyr Formula gamlss gamlss_dist generics ggplot2 ggrepel gridExtra lmtest magrittr pbapply Rfast rlang statmod tibble]; }; mixreg = derive2 { name="mixreg"; version="2.0-10"; sha256="1vmidnhb899lmprybym71w0l869msrgvlqr3099kwj05sph85pwm"; depends=[]; }; mixsmsn = derive2 { name="mixsmsn"; version="1.1-10"; sha256="1w31br65la62zw847bw4bz0shvgna680wagxnqmc71kpy4a9mv3x"; depends=[mvtnorm]; }; - mixsqp = derive2 { name="mixsqp"; version="0.3-43"; sha256="1qics04w0swyp216d6g8dmsph8q2kpadpacp66h2qih3521js12q"; depends=[irlba Rcpp RcppArmadillo]; }; - mixtools = derive2 { name="mixtools"; version="1.2.0"; sha256="08whic8hmmzi55b7azwj11l2x5r9s5qbyrv7s9jr08156vqkw0zg"; depends=[kernlab MASS segmented survival]; }; + mixsqp = derive2 { name="mixsqp"; version="0.3-48"; sha256="02cjg33m5iqziyy0xi11wvbm5qnlgfy51r1dbpjzyhqsrv1dfx48"; depends=[irlba Rcpp RcppArmadillo]; }; + mixtools = derive2 { name="mixtools"; version="2.0.0"; sha256="03by64xi7yka0hzc1qyz1jdqzah6isvr3cdsc7g5v6hb4f178kl5"; depends=[kernlab MASS plotly scales segmented survival]; }; mixtox = derive2 { name="mixtox"; version="1.4.0"; sha256="1lca26s80f92c18wkpp5gs2ifylnyqyg933w7r5ir3xvsfbk0lfh"; depends=[minpack_lm]; }; mixtur = derive2 { name="mixtur"; version="1.2.0"; sha256="1kdzhjad6bwg6ga4bm545iw147h6zhj1a038ajlnbgynd9j8h8nh"; depends=[dplyr ggplot2 RColorBrewer rlang tidyr]; }; mixture = derive2 { name="mixture"; version="2.0.5"; sha256="16ydhsgssd5jbhf03llxy2gjhv3h3bqi01s45jcb9dwc3mbd306b"; depends=[BH lattice Rcpp RcppArmadillo RcppGSL]; }; mize = derive2 { name="mize"; version="0.2.4"; sha256="1dfhldxsm1il9avfxvaiir9r878dp7swyc9c8ilm6llx208sd5d5"; depends=[]; }; mizer = derive2 { name="mizer"; version="2.3.1"; sha256="1r14mpwb96xhibf7j3735q67xl17pkjx9pb2m1j4l8rjjpdxl3l0"; depends=[assertthat deSolve dplyr ggplot2 ggrepel lifecycle lubridate plotly plyr progress Rcpp reshape2 rlang]; }; - mkin = derive2 { name="mkin"; version="1.1.1"; sha256="1z34z1bymki5x39pq9gxl7a0c9wki6yzjzrbbfmd2ghi55ick8wh"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild purrr R6 saemix]; }; + mkin = derive2 { name="mkin"; version="1.2.1"; sha256="0k1c7rr8y12glg6n2lvhka2h7dipxjm3sjrav941l4lahpc60848"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild R6 rlang saemix vctrs]; }; mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; }; mkssd = derive2 { name="mkssd"; version="1.2"; sha256="1vgg5azr4qydqb6xbdbff9256bwz7gl3k3hpn7998rm9jhdmynnd"; depends=[]; }; mlVAR = derive2 { name="mlVAR"; version="0.5"; sha256="11mn7gaqlmw01gvg7psqkkr5bgv4iclv0590av4xzbvq8496f5g2"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph rlang]; }; @@ -12484,49 +12556,50 @@ in with self; { mlergm = derive2 { name="mlergm"; version="0.8"; sha256="0bpdljmbn4lfm263jcsp0hrknixn49m7hqsx0jjk3pfwhgjlajh8"; depends=[cowplot ergm GGally ggplot2 lpSolve Matrix network plyr reshape2 sna stringr]; }; mlf = derive2 { name="mlf"; version="1.2.1"; sha256="09ihnibpknpp26hdlbxyr99yz7z0n8qpsjs5aq3zngng0yh3wdn9"; depends=[]; }; mlfit = derive2 { name="mlfit"; version="0.5.3"; sha256="0nyk5vmy2gkpz022djacy80gibskv96z0rsmjz2rw14zhc5kizsh"; depends=[BB dplyr forcats hms kimisc lifecycle Matrix plyr rlang tibble wrswoR]; }; - mlflow = derive2 { name="mlflow"; version="1.30.0"; sha256="1px2ww12gm10np6h9cnikjl3czix8v2hjkggzxckm4fvrlckh4g0"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr reticulate rlang swagger tibble withr yaml zeallot]; }; - mlim = derive2 { name="mlim"; version="0.2.0"; sha256="04ssk3syx3cb5rcmycqfdssxcnp5nlnmnc58mr9bis129shhmvdg"; depends=[curl h2o md_log memuse mice missRanger]; }; + mlflow = derive2 { name="mlflow"; version="2.0.1"; sha256="1h70cg8xd434f2lwam2zbsjkzvavzz5yqg3wa9v0289h6vp0v5zb"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr rlang swagger tibble withr yaml zeallot]; }; mlmRev = derive2 { name="mlmRev"; version="1.0-8"; sha256="0ln4nazhc1prnlmvhfzhx268vx3klb0xnz1nsiwh0pwyskskyzym"; depends=[lme4]; }; mlma = derive2 { name="mlma"; version="6.2-1"; sha256="1jvra77xhf0a6qb2kb953inpg2lzv0y88kb6zzcw35bb8gipzm78"; depends=[abind car coxme gplots lme4 survival]; }; mlmc = derive2 { name="mlmc"; version="1.0.0"; sha256="01h7w0ajyg3bccynlpbi3yjpy089wczbfbajpg6yw5v4dppw7k7a"; depends=[ggplot2 Rcpp]; }; + mlmhelpr = derive2 { name="mlmhelpr"; version="0.1.0"; sha256="1liqawmdz3a8jxnlbhxx9iz5nlybkyz7jr719y0xkqz4h741bj5s"; depends=[lme4 mathjaxr Rdpack]; }; mlmi = derive2 { name="mlmi"; version="1.1.1"; sha256="0ksx5qih54ww983ycs08hhr50ms2c2k6pk07mrcwdgli7irzc2cc"; depends=[cat gsl MASS Matrix mix nlme norm]; }; mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.6"; sha256="14xp8k7sww1skyw5l2006gpaw2c6yrri5nmfx4yav4vqdlhcj2k1"; depends=[coxme Matrix multcomp multcompView sommer]; }; mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; mlmtools = derive2 { name="mlmtools"; version="1.0.2"; sha256="1fwa0cwrrhzxr5zkvmf0q1w2wlrhj58lwmrvqxfn00v0v9d6bi0g"; depends=[ggplot2 lme4]; }; - mlmts = derive2 { name="mlmts"; version="1.0.1"; sha256="1j6yq4aj2kpqli6xk09ki1vrx91r2n5jasqhx361qp5rn8cn66h7"; depends=[AID caret ClusterR complexplus DescTools dtw e1071 evolqg fda_usc forecast freqdom geigen ggplot2 MASS Matrix MTS multiwave pracma pspline psych quantspec ranger Rdpack Rfast TSA TSclust TSdist tseries tseriesChaos tsfeatures waveslim]; }; mlogit = derive2 { name="mlogit"; version="1.1-1"; sha256="0hyi6gi03n895iydrfr1ba2ifbsd6lyjyhkq62d95ghhniysjgkg"; depends=[dfidx Formula lmtest MASS Rdpack statmod zoo]; }; mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-7"; sha256="0q8c5897z8f519nf6p55ksc610a9dbpnah2rr4srij4gs9a4clx1"; depends=[abind BMA maxLik]; }; mlpack = derive2 { name="mlpack"; version="4.0.0"; sha256="1wly4md76hm75c4vhvgmd3akc1py4f19s6c4rbpq41qn3sf5iqmj"; depends=[Rcpp RcppArmadillo RcppEnsmallen]; }; mlpwr = derive2 { name="mlpwr"; version="1.0.0"; sha256="01kyyy3q7qd7wpccl1ibiq7fkbh552c6l4yflxvdy1j2fm8w5gic"; depends=[DiceKriging digest ggplot2 randtoolbox rgenoud rlist WeightSVM]; }; mlquantify = derive2 { name="mlquantify"; version="0.2.0"; sha256="1fpwvix0f4bmqb1y1b6wryndqp6j24dwsspbfx1zrnhzwj1v4i9i"; depends=[caret FNN randomForest]; }; mlr = derive2 { name="mlr"; version="2.19.1"; sha256="00jjhvaqifj6glqsyzixlp56bvlch5smck8kk3klcmwx9pasyllx"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; - mlr3 = derive2 { name="mlr3"; version="0.14.0"; sha256="0cnyby4947g1w0h45nd3ld5zr4k19xrwp565mq1hnqkjwmyjsgdj"; depends=[backports checkmate data_table evaluate future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 uuid]; }; + mlr3 = derive2 { name="mlr3"; version="0.14.1"; sha256="192hvc0may73m396j2igwm46ym6f345w6q0q69kqhia58fp6h3nd"; depends=[backports checkmate data_table evaluate future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 uuid]; }; mlr3benchmark = derive2 { name="mlr3benchmark"; version="0.1.4"; sha256="1h97fc2ffay6r2ql8py24kmw65pr9cxh11ni3i1bzllbn8skqrfn"; depends=[checkmate data_table ggplot2 mlr3misc R6]; }; - mlr3cluster = derive2 { name="mlr3cluster"; version="0.1.4"; sha256="1infwd275j0jkm62nzzpblkn67hjsbpxw0l1plc4gz8p9q1gwjj5"; depends=[backports checkmate clue cluster clusterCrit data_table mlr3 mlr3misc paradox R6]; }; + mlr3cluster = derive2 { name="mlr3cluster"; version="0.1.5"; sha256="049gxl66frhi0nhy0nlcbw5f969j5disln2cdj6sqdhz9hqjrm54"; depends=[backports checkmate clue cluster clusterCrit data_table mlr3 mlr3misc paradox R6]; }; mlr3data = derive2 { name="mlr3data"; version="0.6.1"; sha256="1nbasjmn2lkrn00qw2dv9qc3d21fdc6nrrr8qagd5v5z2afy08zc"; depends=[]; }; mlr3db = derive2 { name="mlr3db"; version="0.5.0"; sha256="0gvmn85sqn3klziy8nd726nim28cvfgdaddp4ilbq3v0jr745giz"; depends=[backports checkmate data_table mlr3 mlr3misc R6]; }; mlr3fairness = derive2 { name="mlr3fairness"; version="0.3.1"; sha256="09ybdgp659fnv20cm427kd5pirhw28q3q5zxgy5k699frzwm5fgq"; depends=[checkmate data_table ggplot2 mlr3 mlr3measures mlr3misc mlr3pipelines paradox R6]; }; mlr3filters = derive2 { name="mlr3filters"; version="0.6.0"; sha256="0v0jdgmdc7ihnpan1iqhldqd6qjpridaajnpzn2ga3bfl9g1nim0"; depends=[backports checkmate data_table mlr3 mlr3misc paradox R6]; }; - mlr3fselect = derive2 { name="mlr3fselect"; version="0.7.2"; sha256="102cv6is5wsj72i9ws1p5zzbv3rmgfhmj5g110n81vz0bqi0sz14"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3pipelines paradox R6]; }; - mlr3hyperband = derive2 { name="mlr3hyperband"; version="0.4.2"; sha256="1ybdbfsd7d8z8nhclrpp2by2yrfwfy1pgm2kbslqzvyhm7wpf038"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; - mlr3learners = derive2 { name="mlr3learners"; version="0.5.4"; sha256="0sa2qjvhvjzsfssln9ah08zknzdcps1z28xzgkdfgi6dj25a0y3k"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; + mlr3fselect = derive2 { name="mlr3fselect"; version="0.8.1"; sha256="1yilsw5vjmcr3v0mykxcgkl1qbkz8x20970bz0nk4diadfycd519"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3pipelines paradox R6]; }; + mlr3hyperband = derive2 { name="mlr3hyperband"; version="0.4.4"; sha256="02zyw4wir8gnqfv7g4b19ldfmnbxqgvbcnp744fcv67gigh8glsh"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; + mlr3learners = derive2 { name="mlr3learners"; version="0.5.5"; sha256="0m5s7jfqfh48gxllvi93wb5w2pzhzx8rcx5bz87lkmv1cnj65q84"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; + mlr3mbo = derive2 { name="mlr3mbo"; version="0.1.1"; sha256="0gm2waqp6mb2nf12rnwfyig9n9c2bxdyq4mhhray8cc6fcb100f0"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; mlr3measures = derive2 { name="mlr3measures"; version="0.5.0"; sha256="0k0i1xx63lds1870p2ljy1dlp2i376gdd0sq9s4xiqljqjb8va57"; depends=[checkmate PRROC]; }; mlr3misc = derive2 { name="mlr3misc"; version="0.11.0"; sha256="0haxj0zlflalw10nhdwmk45qsl164bgyjgnm101l2wybw795ixfi"; depends=[backports checkmate data_table digest R6]; }; - mlr3oml = derive2 { name="mlr3oml"; version="0.6.0"; sha256="1h7i0bczksv81gwyachcyv4wxfz02bm3j3i5azb0lykvrvfljkjh"; depends=[backports checkmate curl data_table jsonlite lgr mlr3 mlr3misc paradox R6 stringi uuid withr]; }; + mlr3oml = derive2 { name="mlr3oml"; version="0.7.0"; sha256="1gg60x5ysnhlkgqqrqkgkxz3b55yfmlz45bx1x18rjwr4szal26j"; depends=[backports checkmate curl data_table jsonlite lgr mlr3 mlr3misc paradox R6 stringi uuid withr]; }; mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.4.2"; sha256="09pk3dwjcg5rbpwa1k21srdpvf2dlxq4b5p71cvkha85jx2gdgh6"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; mlr3shiny = derive2 { name="mlr3shiny"; version="0.2.0"; sha256="0s581aqi3a3kg35db0gnsmmg62zwl5bij4vbszjhc63i3xg0ayiz"; depends=[data_table DT e1071 mlr3 mlr3learners mlr3measures plyr purrr ranger readxl shiny shinyalert shinydashboard shinyjs shinythemes shinyWidgets stringr]; }; mlr3spatial = derive2 { name="mlr3spatial"; version="0.3.0"; sha256="0b36mjk1y3vdrgrhvdmc0qd7l19b7k9qbgyns4w0711riqz37al4"; depends=[checkmate data_table lgr mlr3 mlr3misc R6 sf terra]; }; - mlr3tuning = derive2 { name="mlr3tuning"; version="0.15.0"; sha256="13p0gcnl8sxvn3ig526pscl63g1dx7l5i9sfzi2yyrddg8vgik4g"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; - mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.3.1"; sha256="0c1m6cv6p54n3pd1li7ccpmcd830qshsw040swp2m8f75gklv8b1"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; - mlr3verse = derive2 { name="mlr3verse"; version="0.2.5"; sha256="1mgspiibjbcv12vb2mqyj2n53vvmdqn8wcqcdhn6lzvblkpi2nbg"; depends=[bbotk data_table mlr3 mlr3cluster mlr3data mlr3filters mlr3fselect mlr3hyperband mlr3learners mlr3misc mlr3pipelines mlr3tuning mlr3tuningspaces mlr3viz paradox]; }; + mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="2.0.3"; sha256="0lxdg82fcgfb57f9n2rwriw43cx10103ymjmz8y6dpx5n006m3d8"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; + mlr3tuning = derive2 { name="mlr3tuning"; version="0.17.1"; sha256="03habi7dm5xgwfb4zjn9nhvyym46qcljy31jz32fxalsap1mk9jb"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; + mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.3.3"; sha256="16yaah9zncl0daq453cl00mbpk9pvap8wv3myb5azj27v7pp1fb6"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; + mlr3verse = derive2 { name="mlr3verse"; version="0.2.7"; sha256="0d8k5p3brhb1qxh6wwsqy6mfnlw2hipwqbqwpb0adwkqiwbnx520"; depends=[bbotk data_table mlr3 mlr3cluster mlr3data mlr3filters mlr3fselect mlr3hyperband mlr3learners mlr3misc mlr3pipelines mlr3tuning mlr3tuningspaces mlr3viz paradox]; }; mlr3viz = derive2 { name="mlr3viz"; version="0.5.10"; sha256="0bd7sgqfn4lkafzyrpjbgkm16hmzwlpl7yjkdjxxaj03g6dk7yf1"; depends=[checkmate data_table ggplot2 mlr3misc scales viridis]; }; - mlrCPO = derive2 { name="mlrCPO"; version="0.3.7-5"; sha256="0jbsy4ppq0l423fp8m7b0w5kslxmlslr2alm7k7x8s9fn3arnckl"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; + mlrCPO = derive2 { name="mlrCPO"; version="0.3.7-6"; sha256="1xvfh5b1806ycdh8brnl63cd3fzr919sdi82acq5n59pz39fz4cc"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; mlrMBO = derive2 { name="mlrMBO"; version="1.1.5.1"; sha256="16fwj7m28g4km7yalqppxmh3lw2jln0z072l6awia38qkdg6xwhc"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; mlrintermbo = derive2 { name="mlrintermbo"; version="0.5.0"; sha256="1nyaqf6vkckdh7jb27iwv5dnvrh4bp0kkc5jzbqkyi8af11phg1l"; depends=[backports bbotk callr checkmate data_table lhs mlr3misc mlr3tuning paradox R6]; }; mlrpro = derive2 { name="mlrpro"; version="0.1.2"; sha256="1j8w8ji1n6cahcbyi1q4zq8gmhpcl15pb97f7bl1km29f4x4f272"; depends=[car dplyr MASS]; }; mlsbm = derive2 { name="mlsbm"; version="0.99.2"; sha256="1p6fflhjbbyzx51hb77aak1kdabjrmzd7b47vdcanhb0vd263aby"; depends=[Rcpp RcppArmadillo]; }; mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.2"; sha256="1icsssgi5xf420ajagr9nw0wgbxpfm7dsd5b7s77vyh5hsfzm1z3"; depends=[]; }; - mlt = derive2 { name="mlt"; version="1.4-2"; sha256="0ris1wfcyslbnn43b7s2p0nk01wzd5m3mm6dnzra73kgkjrdr8hz"; depends=[alabama basefun BB coneproj Matrix numDeriv sandwich survival variables]; }; + mlt = derive2 { name="mlt"; version="1.4-3"; sha256="06jkskmixzn70i7m0zj0rgqzknmrd6jnqrwadrhf7mva38rqvw99"; depends=[alabama basefun BB coneproj Matrix numDeriv sandwich survival variables]; }; mlt_docreg = derive2 { name="mlt.docreg"; version="1.1-6"; sha256="1ijfv3lwizk540g546pyi5i4sxcxwa3b2ylk0gsk68q5w704xpk6"; depends=[eha flexsurv lattice mlt multcomp numDeriv survival truncreg]; }; mltest = derive2 { name="mltest"; version="1.0.1"; sha256="14gyssfph088v936mpywmd4y8z9vdv0zk8638vlg23j8cf5j4al2"; depends=[]; }; mltools = derive2 { name="mltools"; version="0.3.5"; sha256="045v28w7vz1zjxim8vfc6ncvg2mavr1q332x0hzlqpfzrk7gz4vh"; depends=[data_table Matrix]; }; @@ -12545,6 +12618,8 @@ in with self; { mmeln = derive2 { name="mmeln"; version="1.4"; sha256="0q5w3ajc1v798dyvryny2a0c52hzhxrjm4md08mqvww65pdzhqc4"; depends=[]; }; mmmgee = derive2 { name="mmmgee"; version="1.20"; sha256="0y3pwnc9h7y2l9cvgfl62nl1vnnkla2y8082jhdvxsb3mk88rgad"; depends=[Matrix mvtnorm]; }; mmod = derive2 { name="mmod"; version="1.3.3"; sha256="1dz6887mlqbagjj98wcabmxj9hvsz8pgsizy1fqkwjhhs44c62y4"; depends=[adegenet pegas]; }; + mmodely = derive2 { name="mmodely"; version="0.2.2"; sha256="1xbnivb5xvivz8by5hrr3g8g5w7yyw5n65jl1qhxf2lzvdr3prcw"; depends=[ape caper caroline]; }; + mmpca = derive2 { name="mmpca"; version="2.0.3"; sha256="1kzjwl0sn8cdgw3jw95lg90vgh47iw293ffn7c0fb9kgxisd6dma"; depends=[digest Rcpp RcppEigen RcppGSL]; }; mmpf = derive2 { name="mmpf"; version="0.0.5"; sha256="1w1ll1l7yzwb1wmlrcfpgqyzni7yb20kxy422y867hx2ndxlfwpz"; depends=[checkmate data_table]; }; mmpp = derive2 { name="mmpp"; version="0.6"; sha256="16aypjf4i0ya3qgxqrrg8y0xbnq1pnqky1dpkgln5q494hphyg91"; depends=[]; }; mmr = derive2 { name="mmr"; version="0.1.0"; sha256="0by2v47b4kpjhfxzzl6kc1shw7g46nwnww4rq333r2cywvrbkk4w"; depends=[]; }; @@ -12566,10 +12641,11 @@ in with self; { mobr = derive2 { name="mobr"; version="2.0.2"; sha256="0dvsarxkjcjn3f40qkx5pdjpvq7hr6l5nvdz6adxlr1sdbadfcws"; depends=[dplyr egg geosphere ggplot2 pbapply plotrix purrr rlang scales tibble tidyr vctrs]; }; mockery = derive2 { name="mockery"; version="0.4.3"; sha256="0sj77m9vgn4bzb8c8nq93xb9lm8ih8rcb7sfccripraibibg3jcz"; depends=[testthat]; }; mockr = derive2 { name="mockr"; version="0.2.0"; sha256="0qxpyyg25ampjd6fjbhylzjfy15qng6w32yc17q5a2y6fz1scsy0"; depends=[rlang withr]; }; + mockthat = derive2 { name="mockthat"; version="0.2.8"; sha256="02j74gpppspf8ll3mvz879mnjm9wsj8dq5y3i0r8kzdizc6rxk3k"; depends=[rlang]; }; mod = derive2 { name="mod"; version="0.1.3"; sha256="0z5a6ps2m0cbw0n9kn44767m5jnbf1dl077i2p40fipv8xali9fb"; depends=[]; }; mod09nrt = derive2 { name="mod09nrt"; version="0.14"; sha256="1wn1y33bj9r712l0f063j5gcl423anjzmvgfy0ddihcrbpz4l7a0"; depends=[]; }; mod2rm = derive2 { name="mod2rm"; version="0.2.1"; sha256="1adx8ndz299hzlljahvbv1px60dfchwh2ic6njr12k3zcm52rsby"; depends=[ggplot2 scales]; }; - modEvA = derive2 { name="modEvA"; version="3.5"; sha256="17rhp2i09ps04vz43k0drjwwsdx5g1615grrg1b0bf7gzbc5b9iy"; depends=[terra]; }; + modEvA = derive2 { name="modEvA"; version="3.8.4"; sha256="1vq028rn4d5hlkvdp2z7a95dglw6vp4xdaia7wsbkhy3fv41mqzq"; depends=[terra]; }; modMax = derive2 { name="modMax"; version="1.1"; sha256="1mx4623az7vzaqf530pklx7j92qwwq93pa2416lnr24jjcxgva2h"; depends=[gtools igraph]; }; modQR = derive2 { name="modQR"; version="0.1.3"; sha256="15ks5i7s19r4s9faxn36qlcf4y150b6xji970kxgilcgxvfqkgd8"; depends=[geometry lpSolve]; }; modTurPoint = derive2 { name="modTurPoint"; version="0.1.0"; sha256="1m24vsi80ln1r7sr40pipaaanyc60yfxmjzf8l7nfy3yvyr8zqpn"; depends=[]; }; @@ -12580,7 +12656,6 @@ in with self; { model4you = derive2 { name="model4you"; version="0.9-7"; sha256="0pni9v3nradvy8sp2m07903vc7z610xrh426lf19dxss12kgrfi8"; depends=[Formula ggplot2 gridExtra partykit sandwich survival]; }; modelDown = derive2 { name="modelDown"; version="1.1"; sha256="1l0aggkh0ykpqrp59bdz1cyl1ai397cw4hya80b7fm7s49imwczg"; depends=[archivist auditor breakDown DALEX devtools drifter DT ggplot2 kableExtra psych svglite whisker]; }; modelObj = derive2 { name="modelObj"; version="4.2"; sha256="0qj8ri7aw9lc7cc7rcs618bcbarcs29zgbz8l74s55qajvwpssg0"; depends=[]; }; - modelROC = derive2 { name="modelROC"; version="1.0"; sha256="0iyx7c98ym7dy6pfssj7474h9wjpzjwy0fyc5bnqyi1lmjgd508k"; depends=[do ggplot2 ROCit survivalROC tmcn]; }; modelStudio = derive2 { name="modelStudio"; version="3.1.0"; sha256="0hd3x5jnj3s4b0hahxzjxfclhr92adf1xhs7hgc1k8bm9ngnqqxm"; depends=[DALEX digest iBreakDown ingredients jsonlite progress r2d3]; }; modelbased = derive2 { name="modelbased"; version="0.8.5"; sha256="1fm5d94bck4vkp0lf6qfjbjg1561hapr2dq06g8hahfw9wq6ak3l"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; modelc = derive2 { name="modelc"; version="1.0.0.0"; sha256="0xz1zgv5yyvq0yfnhm1kvb4wvlyn4ccd0lkwji55vq8hndvjvk98"; depends=[]; }; @@ -12590,10 +12665,10 @@ in with self; { modelgrid = derive2 { name="modelgrid"; version="1.1.1.0"; sha256="1z6g0akczry7vldkk6anfq572zbsfzbd6qnyllgjpbxhy3rrrq0r"; depends=[caret dplyr ggplot2 lattice magrittr purrr]; }; modelimpact = derive2 { name="modelimpact"; version="1.0.0"; sha256="16sy7r6bw5nzx77rd27ihgvp7bs39xchgid94ssklj6syc3kn2vq"; depends=[dplyr magrittr]; }; modelplotr = derive2 { name="modelplotr"; version="1.1.0"; sha256="0i1ssfcyl97zaxc9khdngrmsq9ydrmgv2nd7c6kc6i9z93jbkk4k"; depends=[dplyr ggfittext ggplot2 gridExtra magrittr RColorBrewer rlang scales]; }; - modelr = derive2 { name="modelr"; version="0.1.9"; sha256="1jd9vxirj5ii4ac0ka07g0rcq1c8yqv06jg27nmvp5a6kvlgvs8h"; depends=[broom magrittr purrr rlang tibble tidyr tidyselect vctrs]; }; - modelsummary = derive2 { name="modelsummary"; version="1.1.0"; sha256="1hfrgl6crmznbx2mkr5grd87zrgx8m5j7zjyq89yr5g0n6gl9ka2"; depends=[broom checkmate data_table generics glue insight kableExtra parameters performance tables]; }; + modelr = derive2 { name="modelr"; version="0.1.10"; sha256="0qqgdb7gpb1h9lf5zijg51gd0qmbzj8f37aykhv1w633cglacick"; depends=[broom magrittr purrr rlang tibble tidyr tidyselect vctrs]; }; + modelsummary = derive2 { name="modelsummary"; version="1.2.0"; sha256="0fcr1x1gjwhl46vikac2phms4ahlr1cpigj8p7kcdbhs9sc29drk"; depends=[broom checkmate data_table generics glue insight kableExtra parameters performance tables]; }; modeltests = derive2 { name="modeltests"; version="0.1.4"; sha256="0ii5sh8yz5yvf0gq41ia55dvbg8x9042x82j52ck6haxa0w8zpfy"; depends=[dplyr generics purrr testthat tibble]; }; - modeltime = derive2 { name="modeltime"; version="1.2.3"; sha256="0zb4q7m5wsism4n508hsya6ln0i14iclk6jy0l4cslz99lzb2v9q"; depends=[cli dials doParallel dplyr forcats foreach forecast ggplot2 glue gt hardhat janitor magrittr parallelly parsnip plotly prophet purrr reactable rlang scales StanHeaders stringr tibble tidyr timetk workflows xgboost yardstick]; }; + modeltime = derive2 { name="modeltime"; version="1.2.4"; sha256="11l4yysk5g4p0vh4h7dyqkzxa5cm3q3cjlimwhmbslfby36hki6x"; depends=[cli dials doParallel dplyr forcats foreach forecast ggplot2 glue gt hardhat janitor magrittr parallelly parsnip plotly prophet purrr reactable rlang scales StanHeaders stringr tibble tidyr timetk workflows xgboost yardstick]; }; modeltime_ensemble = derive2 { name="modeltime.ensemble"; version="1.0.2"; sha256="1yywl3vnc03wbz9fl3gq9cclvx8rsvnndyqb6d4ws9y5g60hnxhd"; depends=[cli doParallel dplyr foreach generics glue magrittr modeltime modeltime_resample parsnip purrr recipes rlang rsample stringr tibble tictoc tidyr timetk tune workflows yardstick]; }; modeltime_gluonts = derive2 { name="modeltime.gluonts"; version="0.1.0"; sha256="1nivqpdyr2s6q70bixna0a18gbhrf1r20vm0gj8b51idjignwpp7"; depends=[dplyr forcats fs glue magrittr modeltime parsnip purrr reticulate rlang stringr tibble tidyr timetk]; }; modeltime_h2o = derive2 { name="modeltime.h2o"; version="0.1.1"; sha256="0rg7ha1zy0a1fbwrljsglfnfgkl747hjga8xajlzyrczhrmh4vnk"; depends=[dplyr fs glue h2o magrittr modeltime parsnip purrr rlang stringr tibble tidyr timetk]; }; @@ -12601,7 +12676,7 @@ in with self; { modeltools = derive2 { name="modeltools"; version="0.2-23"; sha256="1vqh69256h344sbj5affm0kmc77dakrxp6442xfdnfd0y5d8sgkb"; depends=[]; }; modelwordcloud = derive2 { name="modelwordcloud"; version="0.1"; sha256="0ardib0h923i7jk8bgcq6pn2zazx9acf9sdggifsk46hdz8hvqnm"; depends=[]; }; modernVA = derive2 { name="modernVA"; version="0.1.1"; sha256="1kjfgr7fcf0w27gx1wwapxcw5wisfv75mq9qc5hjnaivmsnkwsv3"; depends=[]; }; - moderndive = derive2 { name="moderndive"; version="0.5.4"; sha256="0w4xj84f8dcq3ikxy3vhsyb85brsgcvnhzwawigh34mz64m7nhlc"; depends=[broom dplyr formula_tools ggplot2 glue infer janitor knitr magrittr rlang stringr tibble]; }; + moderndive = derive2 { name="moderndive"; version="0.5.5"; sha256="0bgq6wsyyi6nsxqqh2k3zsmk64pfvb57z8pzk8ych3xih491hzlm"; depends=[broom dplyr formula_tools ggplot2 glue infer janitor knitr magrittr rlang stringr tibble]; }; modest = derive2 { name="modest"; version="0.3-1"; sha256="07rs014hdcabp2n0gg14pz2gmqgbw38vjv7a80vkzzh3601hxqws"; depends=[knitr rhandsontable shiny shinyBS]; }; modesto = derive2 { name="modesto"; version="0.1.4"; sha256="12p5azbbng1hnvs5b86g85871dn5534iv7r6fw5v1iv1h1rcypcr"; depends=[markovchain Rcpp]; }; modgetxl = derive2 { name="modgetxl"; version="0.4"; sha256="0j9fmhy3wra9qr8753a495ligfz5fwgydv3ixlfzx3sgbq882hic"; depends=[DT readxl shiny shinydashboard]; }; @@ -12621,7 +12696,7 @@ in with self; { molaR = derive2 { name="molaR"; version="5.1"; sha256="1wqxyrsql36aqiwh0mcyv1ynbzn6p2was4wmaqrkpyxvnbl0f25y"; depends=[alphahull pracma rgl Rvcg]; }; molic = derive2 { name="molic"; version="2.0.3"; sha256="1qgb63wl5726mypv0f07wcf3aznl93vh045ghx66hiqj3kzfir2b"; depends=[doParallel ess foreach ggplot2 ggridges Rcpp]; }; molnet = derive2 { name="molnet"; version="0.1.0"; sha256="1ha1jyh3mmbv2zgr2zrrjmslwd1gyy04hvqjk4d3ap2kna35wlgk"; depends=[dplyr igraph magrittr readr Rfast rlang stringr tibble tidyr WGCNA]; }; - mombf = derive2 { name="mombf"; version="3.1.4"; sha256="08ppgryb6wgnl333dsm1schpw9gzjcq0a70h43k1f7s4m6r6549i"; depends=[glmnet mclust mgcv mvtnorm ncvreg pracma Rcpp RcppArmadillo sgd survival]; }; + mombf = derive2 { name="mombf"; version="3.2.0"; sha256="1a20bx37fpvyaal7ld279grym1fjciqsh03qxl6mkdiz6lxq4as3"; depends=[glmnet mclust mgcv mvtnorm ncvreg pracma Rcpp RcppArmadillo sgd survival]; }; momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; }; momentfit = derive2 { name="momentfit"; version="0.3"; sha256="0v6s6zpbz3sgna9fyjiinqmsyx4m1cd53rlkws9q2fscvwgfxjv7"; depends=[sandwich]; }; moments = derive2 { name="moments"; version="0.14.1"; sha256="0r6qf3i1rzh2822bx1p0h8mh91gsbgg6asl2rzh2l4ys094bilif"; depends=[]; }; @@ -12630,7 +12705,7 @@ in with self; { monaco = derive2 { name="monaco"; version="0.2.2"; sha256="109m9rvy39bp7j3jj8y6qdr4dran0qqvcx267mvil9c8ipxr89ms"; depends=[htmltools htmlwidgets rstudioapi shiny]; }; monashtipr = derive2 { name="monashtipr"; version="0.1.0"; sha256="050xa9ghhf5xy76vndry7rhqn3hn0lhz6wjwz9vxk6mcfy5j2wq5"; depends=[glue httr lifecycle magrittr purrr rlang rvest xml2]; }; mondate = derive2 { name="mondate"; version="0.10.02"; sha256="18nsqldj1vvv882nh2dyilqvz1jbhqkz3q69cpjq1xfcj0z88qxz"; depends=[]; }; - mongolite = derive2 { name="mongolite"; version="2.6.2"; sha256="0xk49lsn8q9wm14zld1kmy0r4y7fzgj2av6sid9i43y7lr64dckg"; depends=[jsonlite mime openssl]; }; + mongolite = derive2 { name="mongolite"; version="2.7.0"; sha256="1n4mrzimk7i3jgdp0yxgs02ki76v5c8cnnfqy5zrxjrhgvhz4vq0"; depends=[jsonlite mime openssl]; }; mongopipe = derive2 { name="mongopipe"; version="0.1.1"; sha256="081l6d1kwh30wq5kwz9dd2a9221x9139x1xbvfiqixwv0g9sjjy0"; depends=[jsonlite magrittr rlang]; }; monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; }; monmlp = derive2 { name="monmlp"; version="1.1.5"; sha256="19cx60csm8mnf6ksg64vlhi8wi1c7bmv9l55y9zmaljblr0kmzxf"; depends=[optimx]; }; @@ -12662,11 +12737,11 @@ in with self; { mosaicCore = derive2 { name="mosaicCore"; version="0.9.2.1"; sha256="1yns15yxr6215xf9qsxfvl24a9zvh1chw49n31dql7fy1zr1dkmp"; depends=[dplyr MASS rlang tidyr]; }; mosaicData = derive2 { name="mosaicData"; version="0.20.3"; sha256="1s97yq24z7yhzmx0dpspfadpd8hndyhn7aiw0nslwrhvilhwa409"; depends=[]; }; mosaicModel = derive2 { name="mosaicModel"; version="0.3.0"; sha256="1gx4rzh0h922gyb50vz6q5vqqp5ry5hf2mq95948q2gcady91k5w"; depends=[caret dplyr ggformula ggplot2 knitr lazyeval MASS mosaicCore testthat tibble tidyr tidyverse]; }; - mosmafs = derive2 { name="mosmafs"; version="0.1.2"; sha256="04syr5qr91hyv1m5hfrjsriq0qgidaln06m7f3jgc1qyrni930rw"; depends=[BBmisc checkmate ecr MASS mlr mlrCPO parallelMap ParamHelpers smoof]; }; + mosmafs = derive2 { name="mosmafs"; version="0.1.2-1"; sha256="0xv9gf85d2fy9xdiik2dqd44xygsr6yr8fvmqkak1bpxnrkkb4hl"; depends=[BBmisc checkmate ecr MASS mlr mlrCPO parallelMap ParamHelpers smoof]; }; mosqcontrol = derive2 { name="mosqcontrol"; version="0.1.0"; sha256="199rkfisagr4kfx358f8yrbls00fng0kq8siyrbfwwf8qrba9fla"; depends=[assertthat magrittr NlcOptim nloptr pracma sfsmisc]; }; mosum = derive2 { name="mosum"; version="1.2.7"; sha256="1zixjf3s381d44s63qzz4hpx4cd2d3rgzvzgg75gpzfkvxnf5f8c"; depends=[plot3D RColorBrewer Rcpp]; }; motif = derive2 { name="motif"; version="0.5.2"; sha256="15jdx822iskn73b6pzcxvawkyn45dp5vqwk78g80fackn6vf3ry5"; depends=[comat philentropy Rcpp RcppArmadillo sf stars tibble]; }; - motifcluster = derive2 { name="motifcluster"; version="0.2.2"; sha256="011mm601z7l9114z1b8p05pcmaya28iqnbawbbgnr16y73ar1hpj"; depends=[igraph Matrix RSpectra]; }; + motifcluster = derive2 { name="motifcluster"; version="0.2.3"; sha256="1ynfjz9di1f1cm6bmx81a8mzkjkhclk21mx8b6css953dih06ngb"; depends=[igraph Matrix RSpectra]; }; motifr = derive2 { name="motifr"; version="1.0.0"; sha256="01synariq39mzhx12jbcpwn982piakakl97sgs33xa8xrbwzcxgm"; depends=[dplyr ggplot2 ggraph igraph intergraph network purrr RColorBrewer reshape2 reticulate rlang scales tibble tidygraph]; }; motmot = derive2 { name="motmot"; version="2.1.3"; sha256="09qsyc4ifdl316kjqqkarmflpjcd0ivkhx5fzi3502anj6dxpjnq"; depends=[ape caper coda ks mvtnorm Rcpp]; }; motoRneuron = derive2 { name="motoRneuron"; version="1.0.0"; sha256="1hdsf4c1v5hfaqpi5y1v60zqq5fdmlqdvzpsq77diclp9vzdshja"; depends=[dygraphs ggplot2]; }; @@ -12681,7 +12756,7 @@ in with self; { movecost = derive2 { name="movecost"; version="1.8"; sha256="0cd13w8lpzprwry12q2zq6s79v339dnh21lx1ivmkyd6va864mid"; depends=[chron elevatr gdistance leastcostpath maptools raster rgdal rgeos sp spatstat_geom terra]; }; mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; }; mpath = derive2 { name="mpath"; version="0.4-2.22"; sha256="0i4vyli3sr1lzrj0ayzsq55cpsv0xrwn216lgzmfyjr5n8r9aw7r"; depends=[bst doParallel foreach glmnet MASS numDeriv pamr pscl WeightSVM]; }; - mpathsenser = derive2 { name="mpathsenser"; version="1.1.0"; sha256="13l64fkvbhgsi1p1fjwybgagxhnwcrkgy26z4bpjfc3xhc7mjnww"; depends=[DBI dbplyr dplyr furrr future jsonlite lubridate magrittr purrr rjson rlang RSQLite tibble tidyr]; }; + mpathsenser = derive2 { name="mpathsenser"; version="1.1.2"; sha256="1ykaxkidkihqsv2mrb67gy1xmpsnr0byd9gng0d30m8wc5f827gk"; depends=[DBI dbplyr dplyr furrr jsonlite lifecycle lubridate magrittr purrr rlang RSQLite tibble tidyr]; }; mplot = derive2 { name="mplot"; version="1.0.6"; sha256="15cmwk4lphxy5p3azy9lwhij76127h9g4g1j1sv59mbqvrqid0sk"; depends=[bestglm doParallel doRNG dplyr foreach ggplot2 glmnet googleVis leaps magrittr plyr reshape2 scales shiny shinydashboard tidyr]; }; mpm = derive2 { name="mpm"; version="1.0-23"; sha256="1jpv2ddmw7aarqbbyfys1yb840arw33319wnny3v2hk84hldmayj"; depends=[KernSmooth MASS]; }; mpmcorrelogram = derive2 { name="mpmcorrelogram"; version="0.1-4"; sha256="0gv9xswrfvndcjal0csab1w2cnl4rg8pznyxbz84b0qr95jg81ag"; depends=[vegan]; }; @@ -12700,20 +12775,19 @@ in with self; { mra = derive2 { name="mra"; version="2.16.11"; sha256="0268msdy4cs2ifpagmwiabi6aav54ckn214ai18aqv2h97hmixw0"; depends=[]; }; mratios = derive2 { name="mratios"; version="1.4.2"; sha256="18pi0dks0qmw0gv76yqm4gvxdqrcvr25j1vb8k4mkp5p35kzkzff"; depends=[multcomp mvtnorm survival survPresmooth]; }; mrbayes = derive2 { name="mrbayes"; version="0.5.1"; sha256="11n3d18di01vmwqs5a0i1h8839aammzbcavi1jk58bmrwb3l771j"; depends=[BH plyr Rcpp RcppEigen rstan rstantools StanHeaders]; }; - mrbin = derive2 { name="mrbin"; version="1.6.5"; sha256="1zf4cf5zbw2wm4da7icwkdp0nb5aanjp578h26lsw7ac3nvmzpyd"; depends=[]; }; + mrbin = derive2 { name="mrbin"; version="1.7.1"; sha256="0k0jhssacy19l45pcypfg3g1cw9dz6fpf3dkgihx7pldyw4zfh5g"; depends=[]; }; mrbsizeR = derive2 { name="mrbsizeR"; version="1.2.1.1"; sha256="0v06sd5sh7ghlr8lgrv6l4glmv7chj3951pw4ssxrly4hz2rh6i0"; depends=[fields maps Rcpp]; }; - mrds = derive2 { name="mrds"; version="2.2.7"; sha256="18cl5w3f7pwj74fbfa69qs06qs7fz7gnchfncv5mw7nxn17507g0"; depends=[mgcv numDeriv optimx Rsolnp]; }; + mrds = derive2 { name="mrds"; version="2.2.8"; sha256="0pm3vn0cixkdafa789sfscf2zl3kxn192jp4h792n47k0w1add6x"; depends=[mgcv numDeriv optimx Rsolnp]; }; mreg = derive2 { name="mreg"; version="1.2.0"; sha256="1gz19d4l0q3xd1w72ip6mhv20w8fgaaczkkdv40bflwabpxdy420"; depends=[]; }; mregions = derive2 { name="mregions"; version="0.1.8"; sha256="16z610j01nf9k1hamsxydk2j6qdqpbyj29b5hm9r3fi8fm3smhd6"; depends=[data_table geojson geojsonio geojsonsf httr jsonlite rappdirs sf sp tibble xml2]; }; mrf = derive2 { name="mrf"; version="0.1.6"; sha256="0jqpx0ng0l8f7y941awpi82yqbv8ir0sixiw6zdkqpj82d9a7j9m"; depends=[DEoptim forecast limSolve monmlp nnfor]; }; mrf2d = derive2 { name="mrf2d"; version="1.0"; sha256="0fmxn178bkw77iz51bnjxala9xmhs44km57m8msvlw0k69sddyif"; depends=[dplyr ggplot2 Rcpp RcppArmadillo Rdpack tidyr]; }; mrfDepth = derive2 { name="mrfDepth"; version="1.0.13"; sha256="177331j30n707mcl1ghxjc53xjs9qsal15kccc71b0rabkjdq2wv"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; - mrfse = derive2 { name="mrfse"; version="0.4"; sha256="1kwnpmkrgc2ca90nszj4d1p04prv7rjd03qvk1bb2sclkfbhz4yp"; depends=[gtools Rcpp Rfast]; }; + mrfse = derive2 { name="mrfse"; version="0.4.1"; sha256="1kk6j7x4z4vaiwnd2mv2brzd1z7g4kyxxylxf31971i6klnsn4zb"; depends=[gtools Rcpp Rfast]; }; mrgsim_parallel = derive2 { name="mrgsim.parallel"; version="0.2.1"; sha256="074c47fkwy5n9x89dswi3ybnck1f0rlbyad6by32jyslw8bz76ln"; depends=[callr dplyr fst future future_apply mrgsolve]; }; mrgsim_sa = derive2 { name="mrgsim.sa"; version="0.1.0"; sha256="199m6ygwnw6fbld5fqsw1j5jz9x6l1ayrpsc0r51q4fr7nmmpfj2"; depends=[assertthat dplyr ggplot2 mrgsolve patchwork purrr rlang tibble tidyr tidyselect withr]; }; mrgsolve = derive2 { name="mrgsolve"; version="1.0.6"; sha256="0hxwqi4gahsissjsyyxddxk02a81hf2wb81jwfd53pc7x9pp41nh"; depends=[BH dplyr glue lifecycle magrittr Rcpp RcppArmadillo rlang tibble tidyselect]; }; mri = derive2 { name="mri"; version="1.0.1"; sha256="1dssq556kid6c3djp0s6v853cranv2wjs2c9521l5ykg5g33hfmv"; depends=[]; }; - mritc = derive2 { name="mritc"; version="0.5-2"; sha256="07b1b2k1ka43ikj2mhwnazw3ig7w10bf759fimxpksvk5k6wanx2"; depends=[lattice misc3d oro_nifti]; }; mro = derive2 { name="mro"; version="0.1.1"; sha256="00gc2hd8q5hb2xrswclcqqw1gxl83zmpma6bhsggg3kppsw1dpjv"; depends=[MASS matrixcalc]; }; mrregression = derive2 { name="mrregression"; version="1.0.0"; sha256="1yy2sjs0b67bqyggzypp2g7x4fdmi86jx2nbcp2n7hcf9cdacysi"; depends=[data_table Rcpp]; }; ms_sev = derive2 { name="ms.sev"; version="1.0.4"; sha256="1sr2rgiskgwjhwif70qj6ga8i8kg4bh342hff66b2a54rxrchmw5"; depends=[]; }; @@ -12729,7 +12803,7 @@ in with self; { msaenet = derive2 { name="msaenet"; version="3.1"; sha256="067p97z54dwhxy0w4ihi8dddcbvglh8ssynbh29fl9jyxfwjr1ms"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; msamp = derive2 { name="msamp"; version="1.0.0"; sha256="0r5m50x8l5dijy7nzcbxl3ipfnkgvaa9r580b6b71ny3madsc8rh"; depends=[]; }; msce = derive2 { name="msce"; version="1.0.1"; sha256="1x9ivc2bjp07pdn15p3qds00m1m00amcg2dfcdjsgbkx9x1kkfab"; depends=[Rcpp RcppParallel]; }; - mschart = derive2 { name="mschart"; version="0.3.1"; sha256="1ryl221hl0ydpmfanhm3hk063kxvvzqfgwwz3ra37dgy1yamn1kq"; depends=[cellranger data_table htmltools officer writexl xml2]; }; + mschart = derive2 { name="mschart"; version="0.4.0"; sha256="0znylmkzqsk9qw640bhqnn4np748s9q1zcwgyavb3b808nfcv6ri"; depends=[cellranger data_table htmltools officer writexl xml2]; }; mscp = derive2 { name="mscp"; version="1.0"; sha256="18cy7nnvhpjl874bawsh8j1gry9wx134q6gk6j03s6546bzy8lgc"; depends=[]; }; mscstexta4r = derive2 { name="mscstexta4r"; version="0.1.2"; sha256="1hjcasmn33xav2mw085lcndv0432l6sz327aikf63491wj1sj7mw"; depends=[dplyr httr jsonlite pander stringi]; }; mscstts = derive2 { name="mscstts"; version="0.6.3"; sha256="1yqb9p7404yh9bjjjpy83k7yssvvpn3v9vddy47pgwjv4hbpbq19"; depends=[httr jsonlite tuneR]; }; @@ -12747,13 +12821,13 @@ in with self; { msir = derive2 { name="msir"; version="1.3.3"; sha256="1wm83m3cqd6llxb9p2jwim0wb81v84pgdmgcznygzaaq6kbn3n84"; depends=[mclust]; }; mskcc_oncotree = derive2 { name="mskcc.oncotree"; version="0.1.1"; sha256="1n79k3rp84r8j6paqshvingykszsw995fm7yxf1wl1jfp4hiyl4n"; depends=[dplyr glue httr2 magrittr memoise purrr readr rlang tibble tidyjson tidyr]; }; msltrend = derive2 { name="msltrend"; version="1.0"; sha256="1rwy77ijf3hzq2zp47cijwvqcq34rdlfxwhrd9l56bvmlmzr1dqx"; depends=[changepoint forecast plyr Rssa tseries zoo]; }; - msm = derive2 { name="msm"; version="1.6.9"; sha256="08vhazswyxr3y1zb9y60mbg3bappzlizxml8s08p65mh82xxkz5f"; depends=[expm mvtnorm survival]; }; + msm = derive2 { name="msm"; version="1.7"; sha256="1c0dvmrjxx551n207fq4yjr56rdchaf1zzldxx4rx4b6g7jgi2bz"; depends=[expm mvtnorm survival]; }; msma = derive2 { name="msma"; version="2.2"; sha256="1p6lm07wlwyymhj2bpwn9kvxf6q2c6rf9554swnm8gkm1z82324f"; depends=[]; }; msme = derive2 { name="msme"; version="0.5.3"; sha256="0mq57zdas1s87nblnvbif9lisgahfhvmabglvp9imr1mvpwybpbh"; depends=[lattice MASS]; }; msmtools = derive2 { name="msmtools"; version="2.0.1"; sha256="09an9bpr0gnqbglb8kj4x8bb7f5dm2lc3d01wx6dh7j1d99vrrdk"; depends=[data_table ggplot2 msm patchwork scales survival]; }; msos = derive2 { name="msos"; version="1.2.0"; sha256="1fg9q6269cckn4g6isv22k22mzglxhjxjg5npqsikmisribmr9kb"; depends=[mclust tree]; }; mssm = derive2 { name="mssm"; version="0.1.6"; sha256="08bgfli7kvvsfpvlvlcdxp301gy6wggidlgllarxjwi06v9c8as5"; depends=[nloptr Rcpp RcppArmadillo testthat]; }; - mstDIF = derive2 { name="mstDIF"; version="0.1.6"; sha256="0zhslqzvvk8wbgqvcipmzhy94awwfmkv5yfl812m8wmwgpkcqzpb"; depends=[eRm expm Matrix mirt PP scDIFtest]; }; + mstDIF = derive2 { name="mstDIF"; version="0.1.7"; sha256="0krb3g1njm97cnjjhc2p5r8djgnzarn5gm65x76h1k43qxfb5iw1"; depends=[eRm expm Matrix mirt PP scDIFtest]; }; mstR = derive2 { name="mstR"; version="1.2"; sha256="0v8cv9pswkvw0lva6jx5vavsb20dawgq83gn4rgydyhvigcl5szd"; depends=[]; }; mstate = derive2 { name="mstate"; version="0.3.2"; sha256="054dzrd5b0xjjjl7862q3aq1jwgrxbkqz7zpvbdirqsld3zksirw"; depends=[data_table lattice RColorBrewer rlang survival viridisLite]; }; mstclustering = derive2 { name="mstclustering"; version="1.0.0.0"; sha256="1m2hmjia3r5ph5zl2314kq8dmjggzvw3ad8cixjjd70hi8570fpw"; depends=[data_table reshape2]; }; @@ -12765,13 +12839,14 @@ in with self; { mtb = derive2 { name="mtb"; version="0.1.8"; sha256="1xlm3s34y9g4g6nqzm7zwl08j6587qnzmr5xx0fwgiv5mr45jdz4"; depends=[data_table ggplot2 htmltools labeling scales]; }; mtdesign = derive2 { name="mtdesign"; version="0.1.0"; sha256="0fnyw6zcls12b6mmr9pxj3b9vs8pv1ik3h671kmxfgv1k6dwn6b9"; depends=[BH dplyr ggplot2 logger magrittr Rcpp rlang tibble tidyr]; }; mthapower = derive2 { name="mthapower"; version="0.1.1"; sha256="0g6dn0qn7z6qc1gbzspy1n7b803427bc9fv5yqk7j8i1is1p8h94"; depends=[]; }; + mtlgmm = derive2 { name="mtlgmm"; version="0.1.0"; sha256="0q2nl9sk03w0x8khsgwycp1c66nbgrf88hdp6gys7fmvgmaz3yj9"; depends=[caret doParallel foreach mclust]; }; mtsdi = derive2 { name="mtsdi"; version="0.3.5"; sha256="0j4hl690n8x7zfpygw5qv0m0jyl8dnz1d3r4314w06h7c578n2kp"; depends=[gam]; }; muHVT = derive2 { name="muHVT"; version="2.0.0"; sha256="0zcmm2vjw1wak4xzfw3ikd94gd6knzm795183pl4vma0q0ll5bd2"; depends=[cluster conf_design deldir dplyr ggplot2 gtools Hmisc magrittr MASS patchwork plyr polyclip purrr reshape2 rgeos scales sp splancs tidyr tidyverse]; }; muRL = derive2 { name="muRL"; version="0.1-12"; sha256="1nzi0nyspva5ach0q0rvlljlfgmac8vxxggkwdzz1pr1cxhkprwd"; depends=[maps stringr]; }; muRty = derive2 { name="muRty"; version="0.3.1"; sha256="0v7wfb6347h4inf9jcbp6n4xfsqjzgj0i5sdfgqmbw0d5pcpnvhz"; depends=[clue lpSolve]; }; muckrock = derive2 { name="muckrock"; version="0.1.0"; sha256="16lm1iiaaws7clby7qgblqdiznw6abjjgvsxlfpza7l2xdvplxpg"; depends=[]; }; mudata2 = derive2 { name="mudata2"; version="1.1.2"; sha256="0c8x39m7cy9l2r3ywbircgp79g7lmd37m2500z3icmkx6x6k6393"; depends=[dplyr fs ggplot2 glue jsonlite lubridate magrittr readr rlang stringr tibble tidyr tidyselect withr]; }; - mudens = derive2 { name="mudens"; version="1.3.2"; sha256="18kv8xfmmmk0dyw64lwrlrks0gana0s7gaff6nxs59ndgb1pj6yp"; depends=[Rcpp survival]; }; + mudfold = derive2 { name="mudfold"; version="1.1.21"; sha256="0bz0k490pda2a6lx9mmnpvnp6vrlyjd89bn05dsvqgbdfnyfs272"; depends=[boot broom dplyr ggplot2 glmnet mgcv reshape2 zoo]; }; mueRelativeRisk = derive2 { name="mueRelativeRisk"; version="0.1.1"; sha256="16yclfmgxc32pv00vyb9fjdh4syax8ynizr8a29haiq22q5fqclh"; depends=[]; }; muhaz = derive2 { name="muhaz"; version="1.2.6.4"; sha256="1ddy8ayr4rdhzcipdvxdwd7z5g9hfp0ppacl7xf6f2612cn1185g"; depends=[survival]; }; muir = derive2 { name="muir"; version="0.1.0"; sha256="0h3qaqf549v40ms7c851sspaxzidmdpcj89ycdmfp94b2q3bmz98"; depends=[DiagrammeR dplyr stringr]; }; @@ -12796,7 +12871,7 @@ in with self; { multiUS = derive2 { name="multiUS"; version="1.1.0"; sha256="077qyqfbp2r5ah08biiswn4jg03h2jcvi0gij6h5wip16vr0d0yx"; depends=[gplots MASS]; }; multibiplotGUI = derive2 { name="multibiplotGUI"; version="1.1"; sha256="08vmdhrn6qqq57q818cqnmsw7qaa4gnw3m5myzp4dc85njgzzi02"; depends=[cluster dendroextras MASS Matrix plotrix rgl shapes tcltk2 tkrplot]; }; multiblock = derive2 { name="multiblock"; version="0.8.3"; sha256="0n1pyi3swq0hbabd2x5jp3jlnfjlbvpk09p0as61d34fwq97bs0b"; depends=[ade4 car FactoMineR geigen lme4 MASS mixlm plotrix pls plsVarSel pracma progress r_jive Rcpp RcppEigen RegularizedSCA RGCCA RSpectra SSBtools]; }; - multibridge = derive2 { name="multibridge"; version="1.1.0"; sha256="17xcngn6q2wgaxcspfigcvzp6zh2bq8vhmfb3gn9ryq1rf2fchfv"; depends=[Brobdingnag coda magrittr mvtnorm progress purrr Rcpp Rdpack stringr]; }; + multibridge = derive2 { name="multibridge"; version="1.2.0"; sha256="0akl9i3fhgd0pqsvgp7cv2l2l84cqc3cc4lambnjmwdyh7x4qcvd"; depends=[Brobdingnag coda magrittr mvtnorm progress purrr Rcpp Rdpack stringr]; }; multicastR = derive2 { name="multicastR"; version="2.0.0"; sha256="0zxv3kxk8gh2fgllzzg7k625n3p4q5pr465ja0mhvs48m4n262l9"; depends=[]; }; multichull = derive2 { name="multichull"; version="1.0.0"; sha256="1gc7kxxlbanc6rmmbf6h85jf7kj0a78h23m5vwwqqliv018qsv2n"; depends=[igraph plotly shiny shinythemes]; }; multiclassPairs = derive2 { name="multiclassPairs"; version="0.4.3"; sha256="0mz15dl3fiznbnfjjmnhr9z6qh43mwafnkisd7svc3cb0lrbbjci"; depends=[Boruta caret dunn_test e1071 ranger rdist]; }; @@ -12822,11 +12897,12 @@ in with self; { multimark = derive2 { name="multimark"; version="2.1.5"; sha256="09i3djdpwwxjjr2lcb3ghgz09v4gplh8bd2yr70q032hvs7qb9c3"; depends=[Brobdingnag coda Matrix mvtnorm prodlim raster RMark sp statmod]; }; multimode = derive2 { name="multimode"; version="1.5"; sha256="0qxb67qss2pmid0wiwblqng5qmihqchdhbkyjklgj20pvbjz1wjm"; depends=[diptest ks rootSolve]; }; multimorbidity = derive2 { name="multimorbidity"; version="0.5.0"; sha256="1x4869pqckldx6g4zhawjbin03glkxzfszb4qiq7yy2xi444jkl0"; depends=[devtools dplyr lubridate magrittr rlang sqldf stringr tidyr tidyselect tidyverse]; }; - multinet = derive2 { name="multinet"; version="4.1"; sha256="0msmm43x2z0iz4zkmpiksv89035l61ivdrmf2zjinskb09adswzy"; depends=[igraph RColorBrewer Rcpp]; }; + multiness = derive2 { name="multiness"; version="1.0.2"; sha256="08bgjs2mrmsdvha10dr74262yk5ghyflvs8pqbl7bc8aws7lv8f5"; depends=[glmnet Matrix RSpectra]; }; + multinet = derive2 { name="multinet"; version="4.1.1"; sha256="1sfnj8nmfx741xkrds0xbn62ky383l8sir5apv9sbxk3ps108ha2"; depends=[igraph RColorBrewer Rcpp]; }; multinets = derive2 { name="multinets"; version="0.2.2"; sha256="1i5jsq1xy0g0l5d1z3hz4gj6inj4rhd6lf2s5xzd5k8ccp5aba8c"; depends=[igraph Rcpp]; }; multinma = derive2 { name="multinma"; version="0.5.0"; sha256="0s7wybp56f102khxjvlmd55rm1yc728cgp948376vkj0lz4hnsvr"; depends=[bayesplot BH copula dplyr forcats ggdist ggplot2 ggraph glue igraph Matrix purrr randtoolbox Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders stringr tibble tidyr truncdist]; }; multinomialLogitMix = derive2 { name="multinomialLogitMix"; version="1.0"; sha256="0ckw4gn428awka282cx8ddk9p62yp5za0d8hj1qjnkkdphaqzfil"; depends=[coda doParallel foreach ggplot2 label_switching MASS matrixStats mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; - multinomineq = derive2 { name="multinomineq"; version="0.2.4"; sha256="1xxndf4jrh6ds6bpdv833bj64xldfwyr5f3sdd859hwwg9wkdhnb"; depends=[coda quadprog Rcpp RcppArmadillo RcppProgress RcppXPtrUtils Rglpk]; }; + multinomineq = derive2 { name="multinomineq"; version="0.2.5"; sha256="1lm5b3c8z6dqyipr9rwqsh0far4a9v9dfxdvrjlg0iyf723rr39k"; depends=[coda quadprog Rcpp RcppArmadillo RcppProgress RcppXPtrUtils Rglpk]; }; multiocc = derive2 { name="multiocc"; version="0.1.0"; sha256="1043cckddrr1sgnxd3fmj9kcgglmgw52lckxbzc91g6s7p9h7wgx"; depends=[fields interp MASS MCMCpack tmvtnorm truncnorm]; }; multipanelfigure = derive2 { name="multipanelfigure"; version="2.1.2"; sha256="0cm5bd7k0fx6d3gybcll6vvh14byanyk6dj4civqij7psa48iagc"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable magick magrittr stringi]; }; multipleNCC = derive2 { name="multipleNCC"; version="1.2-2"; sha256="0bnc14l5b3x68qnwf3ma8wrclmp6n7fxsc0sbd7cfaayhp8dzcb1"; depends=[mgcv survival]; }; @@ -12845,7 +12921,7 @@ in with self; { multivariance = derive2 { name="multivariance"; version="2.4.1"; sha256="1jbv1rhdy6jgvyhwz25hry3xmnxfsl8pwf0j4rj9r8rg6ik8rv1w"; depends=[igraph microbenchmark Rcpp]; }; multivator = derive2 { name="multivator"; version="1.1-10"; sha256="1a469mhskkk2gx0j14f38fn0wdbfygl3psb0mnp7ckznhmh4w2lg"; depends=[emulator mathjaxr mvtnorm]; }; multiverse = derive2 { name="multiverse"; version="0.6.1"; sha256="0l3h4pg450brw27n0jhc3k5fsl57kczxsmzzs3ffj9lwrpnvvn7z"; depends=[berryFunctions collections dplyr evaluate formatR future_apply knitr magrittr purrr R6 rlang rstudioapi tibble tidyr tidyselect]; }; - multiview = derive2 { name="multiview"; version="0.4"; sha256="0yw4sn79rkw4sxpz25l1l153kbgm6wzg1cz51n38dm73y34k3y3y"; depends=[glmnet Matrix RColorBrewer Rcpp RcppEigen survival]; }; + multiview = derive2 { name="multiview"; version="0.7"; sha256="135krs4cz8d45jy6rqddq12jp8z1c2q3caw04h25839xxzamxcdl"; depends=[glmnet Matrix RColorBrewer Rcpp RcppEigen survival]; }; multiwave = derive2 { name="multiwave"; version="1.4"; sha256="19581kjcyw86cnzhvhhpn997fixm811ggmvb8jkb3dsxg8vp60jc"; depends=[]; }; multiway = derive2 { name="multiway"; version="1.0-6"; sha256="1y9cykarr2aysdrnyab5aklsrc5id5b58881q03lcb5kc385v3gv"; depends=[CMLS]; }; multiwayvcov = derive2 { name="multiwayvcov"; version="1.2.3"; sha256="1znsmca16jac8s5z0j64cck27pvf88anm1mfblabqchqqcz1ykfc"; depends=[boot sandwich]; }; @@ -12866,6 +12942,7 @@ in with self; { mvGPS = derive2 { name="mvGPS"; version="1.2.2"; sha256="1aanrv84c012ijyqql0pw2qlckrpv3wmfv16yhr465xb3rkzz4vj"; depends=[CBPS cobalt gbm geometry MASS matrixNormal Rdpack sp WeightIt]; }; mvLSW = derive2 { name="mvLSW"; version="1.2.5"; sha256="0qg6bn0din22fns0cb4m0dfzgg0slrkfimpx7fslnvncfmx36h66"; depends=[fields wavethresh xts zoo]; }; mvLSWimpute = derive2 { name="mvLSWimpute"; version="0.1.1"; sha256="1caf843cf139f3fiy3nsq6g83xfz70c20zlfwk4pg5jv4rh0jiyg"; depends=[binhf imputeTS mvLSW wavethresh xts zoo]; }; + mvMAPIT = derive2 { name="mvMAPIT"; version="2.0.0"; sha256="0r4pg8m142l1qjm4hggrj0f9g3y927rbva8mj2q16bzdh6fbxbzd"; depends=[checkmate CompQuadForm dplyr foreach harmonicmeanp logging mvtnorm Rcpp RcppArmadillo RcppParallel RcppSpdlog testthat tidyr]; }; mvMISE = derive2 { name="mvMISE"; version="1.0"; sha256="0lnc5g3ksl5cvwylh8p8baxyvq3z32a2i337q7lhg00j031ccy5c"; depends=[lme4 MASS]; }; mvMORPH = derive2 { name="mvMORPH"; version="1.1.6"; sha256="07hnpbc108x693wwx976ixi08q1n0siyz4ccv7024syrzf70ggxc"; depends=[ape corpcor glassoFast pbmcapply phytools spam subplex]; }; mvMonitoring = derive2 { name="mvMonitoring"; version="0.2.0"; sha256="0nfkcbi29fprz3mb7rrnn2rvixi4wmfmdsfsw219hj21vafk1bqz"; depends=[dplyr lazyeval plyr rlang robustbase xts zoo]; }; @@ -12919,12 +12996,12 @@ in with self; { nLTT = derive2 { name="nLTT"; version="1.4.8"; sha256="10njdpz0dl3ckj4ph6hl4ppj1dyj8chrlmq6cl286ayqqqzj8qap"; depends=[ape coda testit]; }; nVennR = derive2 { name="nVennR"; version="0.2.3"; sha256="035gblc8427v0vq288rib3jfpz5fmcpvqg6nfaijwmbkz3gd41b6"; depends=[Rcpp]; }; na_tools = derive2 { name="na.tools"; version="0.3.1"; sha256="1lbzsckfg297n85kzbin65x1l6qgg9l50hd3xi2gflxc7n2xb8bw"; depends=[]; }; - naaccr = derive2 { name="naaccr"; version="1.0.0"; sha256="1hw74a2gjm3gxq0s0qlndhqw0vij6p31walz1ic741z7hqsffqq7"; depends=[data_table stringi]; }; + naaccr = derive2 { name="naaccr"; version="2.0.2"; sha256="1j30fb7qvxzpx0y7hq8sbqvszwjfnc4r2g0j8885fmn2wxvcgzdx"; depends=[data_table stringi XML]; }; nabor = derive2 { name="nabor"; version="0.5.0"; sha256="1nj39cdfwrmhgsi3cq8imxv3n6xzc1v6dzdb2cf2hybjk368v4s7"; depends=[BH Rcpp RcppEigen]; }; - nadiv = derive2 { name="nadiv"; version="2.17.1"; sha256="1v1fbnps55pbaz0q88y8vrxjd503krymc7f8i0xx3yxgdxl56x8q"; depends=[Matrix]; }; + nadiv = derive2 { name="nadiv"; version="2.17.2"; sha256="0v2jw0md4bjn15g6slx2bx7ipr3r0s1zv3frjach3rd7b1bs9z7k"; depends=[Matrix]; }; naflex = derive2 { name="naflex"; version="0.1.0"; sha256="18fqfhm6p38z4h8dznac5v8yz53n86cw2x6ma29kvcbvdp4r3yd2"; depends=[]; }; - naijR = derive2 { name="naijR"; version="0.5.0"; sha256="1z57r70iv3bbdc6v00wnfpcq7bjqgpcsqhnrswqbngp5xl83xz1w"; depends=[lifecycle magrittr mapdata maps RColorBrewer rgdal rlang stringi]; }; - naive = derive2 { name="naive"; version="1.2.0"; sha256="0kgj9dixrdmyl7vgc9a9kxmz751kgrh7rzy3sfs7ihnxdvd2yyp4"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments philentropy purrr readr Rfast scales tictoc]; }; + naijR = derive2 { name="naijR"; version="0.5.1"; sha256="04wcdq0rw3may5hl7md31yiim730y6w5ly80bcdgjli9376qqkil"; depends=[lifecycle magrittr mapdata maps RColorBrewer rgdal rlang stringi]; }; + naive = derive2 { name="naive"; version="1.2.1"; sha256="10364ammzwhixz3s17f8vdag3zac0pwvcziy9z0ji19knyhdigmb"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments philentropy purrr readr Rfast scales tictoc]; }; naivebayes = derive2 { name="naivebayes"; version="0.9.7"; sha256="070m78d8hsbqfbapb6g8vvh91gyznqfdpqsaq6z3raps8zlybsag"; depends=[]; }; naivereg = derive2 { name="naivereg"; version="1.0.5"; sha256="1cxfl419pp7xh1xrad29gvpn6hm0rhk40vylj97ypndh6gmnynzz"; depends=[glmnet gmm grpreg ncvreg]; }; nakagami = derive2 { name="nakagami"; version="1.1.0"; sha256="0bxsg5k51x7qrw34l16da79ck212drkgvzgn9d5zanx5dwv5asl2"; depends=[assertthat]; }; @@ -12933,18 +13010,17 @@ in with self; { namedropR = derive2 { name="namedropR"; version="2.4.1"; sha256="06lg381imi8xnm6jlsxfffjyhzban6z29zwkw8bamglnk0frvzza"; depends=[bib2df dplyr htmltools lubridate qrcode R_utils readr stringr webshot]; }; namer = derive2 { name="namer"; version="0.1.6"; sha256="1h3nfxdhvjjiki1rqjpmiih9vj1hz9j8m5wkazskz8asza23898i"; depends=[cli dplyr fs glue magrittr purrr rstudioapi tibble]; }; namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; }; - nametagger = derive2 { name="nametagger"; version="0.1.1"; sha256="17g8y7x83p1pkgj5hgildndchxsp70va25h93p7r1yjllm56zqv8"; depends=[Rcpp]; }; + nametagger = derive2 { name="nametagger"; version="0.1.2"; sha256="1s3rsplia53cxqpxxkb7l7p56bkgvl5jcjcxgf1a8qaxxf5qngi5"; depends=[Rcpp]; }; nandb = derive2 { name="nandb"; version="2.1.0"; sha256="1rbn4nibjzvwpccpmqn84w9a167f1avyl18kjlapy5dhafvixgbz"; depends=[assertthat autothresholdr BBmisc checkmate detrendr dplyr filesstrings ggplot2 glue ijtiff magrittr purrr Rcpp reshape2 rlang stringr viridis withr]; }; naniar = derive2 { name="naniar"; version="0.6.1"; sha256="0l3l2x85v3srilww483kpgp4zlwixyml257b0cqly8kcpwawlinm"; depends=[dplyr forcats ggplot2 glue magrittr norm purrr rlang tibble tidyr UpSetR viridis visdat]; }; - nanonext = derive2 { name="nanonext"; version="0.6.0"; sha256="05naxc45y05w1x3qly3jqq8fs93z77vj950ggnlmvksp8nks6mdz"; depends=[]; }; - nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; }; + nanonext = derive2 { name="nanonext"; version="0.7.2"; sha256="0xnvnmph3wzdlw4hnwa73qiqdn1xyg12q21bkkk4r17cjilvjbz5"; depends=[]; }; nanostringr = derive2 { name="nanostringr"; version="0.4.0"; sha256="0df46pq93696xgdjky5qf5lk8caz48mb3a3fbrlda8z1rpv2i8bb"; depends=[assertthat ccaPP dplyr epiR forcats magrittr purrr rlang tibble tidyr]; }; nanotime = derive2 { name="nanotime"; version="0.3.7"; sha256="05fbdhbax6k1glidmgl0zjc7y7v1ppbpz4422q3jmxmfack7hwd7"; depends=[bit64 Rcpp RcppCCTZ RcppDate zoo]; }; naptanr = derive2 { name="naptanr"; version="1.0.1"; sha256="074pxm1c8k24b3gbn3ibbwpsixbmjq3wx9agxg3ljflny2s6hhqp"; depends=[data_table httr]; }; naptime = derive2 { name="naptime"; version="1.3.0"; sha256="1cadfv5sdsmz61kf96hf2gbnghf24q40g5c3h9b8prvkxslap691"; depends=[lubridate]; }; nardl = derive2 { name="nardl"; version="0.1.6"; sha256="1vf8im4zs4j0v3k617aaskq9n2fg8sn3j5bllcbz2ircrpijr21m"; depends=[car Formula gtools MASS strucchange tseries]; }; narray = derive2 { name="narray"; version="0.5.1"; sha256="0vpx1fl24ba1c5x3bw0n8bx5yp77gsqybaxgbq6mj6by29ggq73l"; depends=[progress Rcpp stringr]; }; - naryn = derive2 { name="naryn"; version="2.6.9"; sha256="1ipgayb0fcnbaqd9jzkf1lnpvb2jcxjiz2yvzwk9a26iz88ja6pc"; depends=[dplyr glue lifecycle magrittr purrr stringr tidyr]; }; + naryn = derive2 { name="naryn"; version="2.6.12"; sha256="0lz0vcgp0llwr94234aqa7na0rl1120db8mga5wryp3hhs8w7qc1"; depends=[dplyr glue lifecycle magrittr purrr stringr tidyr]; }; nasadata = derive2 { name="nasadata"; version="0.9.0"; sha256="0y88qdy8c1y0prsajxic5vdqfixv9knjsbhw3vbfac8wv3a69bjl"; depends=[dplyr jsonlite plyr png]; }; nasapower = derive2 { name="nasapower"; version="4.0.8"; sha256="1f3hpbfkfqvfv23fajmica1wql8qjsr55m3mmzvmcwpz7hvlky0i"; depends=[crul jsonlite lubridate readr tibble]; }; nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; @@ -12960,7 +13036,7 @@ in with self; { naturaList = derive2 { name="naturaList"; version="0.5.0"; sha256="15kpv73a5bcjhnqp2q6fbw3wdwr3f1zijvaj60hybxv652p8b71f"; depends=[dplyr fasterize htmltools leaflet leaflet_extras magrittr raster rlang sf shiny shinydashboard shinyWidgets sp stringr tidytext vegan]; }; natural = derive2 { name="natural"; version="0.9.0"; sha256="0zxwbf3gg2h0bhl2w0md3rd162vlsgg0dv3187hc0ax7333cc4cx"; depends=[glmnet Matrix]; }; naturalsort = derive2 { name="naturalsort"; version="0.1.3"; sha256="0mz801y9mzld9ypp3xmsjw2d8l9q97sdnv09wrci9xi3yg2sjf6d"; depends=[]; }; - navigatr = derive2 { name="navigatr"; version="0.1.2"; sha256="05gmi2i15gfz2sjkxrfdypih7wzqnw439l8glkc1zci0clk0qwkw"; depends=[cli dplyr pillar purrr rlang tidyselect vctrs]; }; + navigatr = derive2 { name="navigatr"; version="0.2.0"; sha256="0gx8rv56j1jc0jgsbbvfham2cb80419sghda1i9mz1b5i99igdk1"; depends=[cli lifecycle pillar purrr rlang stickyr tidyselect vctrs]; }; nawtilus = derive2 { name="nawtilus"; version="0.1.4"; sha256="1agqx9wiiypkpjrwahwlw5qkvqgkh01swyzc75csf9698x0779pm"; depends=[MASS]; }; nbTransmission = derive2 { name="nbTransmission"; version="1.1.2"; sha256="0vaj2zfyvm2vm1ly1419ysxxrqkv73802n96ifajknh1pair31zk"; depends=[caret dplyr lubridate poisbinom rlang tidyr]; }; nbapalettes = derive2 { name="nbapalettes"; version="0.1.0"; sha256="1wrh2qcm90fcybhcc8wvs2s4a4z8y3mrhc28dvrkwynqwzsbalzs"; depends=[dplyr]; }; @@ -12974,9 +13050,9 @@ in with self; { ncappc = derive2 { name="ncappc"; version="0.3.0"; sha256="0bf00iskrd3x43839bwn957mi3qvm2dhcmqa7hl1ib0gp2r1cnzx"; depends=[bookdown Cairo dplyr ggplot2 gridExtra gtable knitr lazyeval magrittr PopED purrr readr reshape2 rlang rmarkdown scales tibble tidyr xtable]; }; ncar = derive2 { name="ncar"; version="0.4.5"; sha256="1ymxb3av7vd7vljr8h3ga6v01z6nf5j9mc095z0hi31d1khwrd02"; depends=[NonCompart rtf]; }; ncbit = derive2 { name="ncbit"; version="2013.03.29.1"; sha256="01352byijhwhcb7jji7bf5cm6v2yfz925f8wbivrx12x0c65fzw4"; depends=[]; }; - ncdf4 = derive2 { name="ncdf4"; version="1.19"; sha256="0qzvin2fjzcb7h2knlnw14s6043pwi1nm7yf6p27ax7w269173fb"; depends=[]; }; + ncdf4 = derive2 { name="ncdf4"; version="1.20"; sha256="1kpi5xygx1nj8ybxrn9z0jxi3lbcibdvc7mjgyvm6f9plwjlxjvq"; depends=[]; }; ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-6"; sha256="0qnm41rbxb6v7aqh1mdkjhcc2rhs4wg6wmrllldzd99mzz8slv1r"; depends=[abind ncdf4 PCICt]; }; - ncdfgeom = derive2 { name="ncdfgeom"; version="1.1.3"; sha256="0218cv2jbb9n6wli8zlvmmqkiys09ccpphk506m8xqahq7w8ric7"; depends=[dplyr ncmeta RNetCDF sf stars]; }; + ncdfgeom = derive2 { name="ncdfgeom"; version="1.1.4"; sha256="15sl701snp3pm5wjhiabvwfa0x0vdfzp8ks3b9j8vgc3vsj7dlid"; depends=[dplyr ncmeta RNetCDF sf stars]; }; ncdump = derive2 { name="ncdump"; version="0.0.3"; sha256="09g98mzpky32z41jf23ahzhyv34l34y1gqq99j2hl4pqlvvhxs9i"; depends=[dplyr ncdf4]; }; ncf = derive2 { name="ncf"; version="1.3-2"; sha256="1lqswih19g76aswnf6xygficzf7ri3yayqicifj8cqx8iwvrk91y"; depends=[]; }; ncmeta = derive2 { name="ncmeta"; version="0.3.5"; sha256="1w47dn04brqac98k5s8a88nh6d6qnkcilq3w4pfczbdff1rv2xlk"; depends=[dplyr rlang RNetCDF tibble tidyr]; }; @@ -12984,19 +13060,18 @@ in with self; { ncpen = derive2 { name="ncpen"; version="1.0.0"; sha256="0vl4cbrsifr5s1691gacmp0lk3aqyq0yfafafzv6g3zygi4igrsa"; depends=[Rcpp RcppArmadillo]; }; ncvreg = derive2 { name="ncvreg"; version="3.13.0"; sha256="04r7nf6516wi0bfxgk5rgbkw6qqa8aprsjivvgym19z9i6qaxanm"; depends=[]; }; nda = derive2 { name="nda"; version="0.1.6"; sha256="0pc0aiyx0lyyirgpd5g5syrnpm8pihsq0x1k0d7s05ibw5k9hq1g"; depends=[energy igraph leidenAlg Matrix psych visNetwork]; }; - ndi = derive2 { name="ndi"; version="0.1.2"; sha256="0h9asj7dgbl3kd3a3xvsi02jkh00wl80d17ankdw46yra9dwv9vh"; depends=[dplyr MASS Matrix psych sf stringr tidycensus tidyr]; }; + ndi = derive2 { name="ndi"; version="0.1.3"; sha256="0f24lfw9mzhdf2afjjzsh0bhlj2gwndry7pgd7i4s0497w26ycbl"; depends=[dplyr MASS Matrix psych sf stringr tidycensus tidyr]; }; ndjson = derive2 { name="ndjson"; version="0.9.0"; sha256="18j5bibranvbv84hvbsg6glmvhfancdsf2w6j99n3nw53bcgb12d"; depends=[data_table Rcpp tibble]; }; ndl = derive2 { name="ndl"; version="0.2.18"; sha256="0b235v6jf98rrqp5aqw3jkk7mq8dbqmhb758zbzza1mavh4n2k7s"; depends=[Hmisc MASS Rcpp]; }; - ndtv = derive2 { name="ndtv"; version="0.13.2"; sha256="0symd0rwzk8kcq7f0flbw3pnyigybgsypjaaq5b5p1pjm1dz0c8j"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; + ndtv = derive2 { name="ndtv"; version="0.13.3"; sha256="05kaqd7p77rfls0s1gqv74j3svh5xdvqni0jin5vxl8y900yc56j"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; neariso = derive2 { name="neariso"; version="1.0.1"; sha256="1b2gnws75kkqsi8mg9n0zzdaawx57a6zz47cswabj5m6nb09ikh8"; depends=[]; }; neat = derive2 { name="neat"; version="1.2.3"; sha256="0mdv47l50wzxnjfk1sway7gzpkyf57svqip16fqn0hrc1fsrifbn"; depends=[igraph]; }; neatRanges = derive2 { name="neatRanges"; version="0.1.4"; sha256="0673lg8mihz8xwh12q12wfn19w8vvnjb7pnz4x3cn2xhkyzwhxq5"; depends=[data_table Rcpp]; }; - neatStats = derive2 { name="neatStats"; version="1.11.0"; sha256="1vrpnd7xgp96rikjx50rh1mc3n2j6k86g0ax322s5ljlymwdh6sp"; depends=[BayesFactor bayestestR car data_table Exact ez fBasics ggplot2 ggpubr logspline MBESS pROC viridis]; }; + neatStats = derive2 { name="neatStats"; version="1.13.3"; sha256="1fj042mwmmjza8giv0f2m7y11j8rnzrcmifyxrv4z9rfqddcvh2s"; depends=[BayesFactor bayestestR car data_table Exact ez fBasics ggplot2 ggpubr logspline MBESS pROC viridis]; }; neatmaps = derive2 { name="neatmaps"; version="2.1.0"; sha256="1kz1na3fzpd8vkxmpp5rz8ksyf8q2wk456csiii82winv9a2zxc9"; depends=[ConsensusClusterPlus dplyr ggplot2 heatmaply igraph]; }; nebula = derive2 { name="nebula"; version="1.2.0"; sha256="1a4jsqxprp4pn7f5nxgha3jvjkcp7rdjlpcjwfc3f89530jhmnyv"; depends=[MASS Matrix nloptr Rcpp RcppEigen Rfast trust]; }; needmining = derive2 { name="needmining"; version="0.1.1"; sha256="0qsj0ihjchrnl4s44rpsizbcz033z00dmzvic2y1msv0bnfawl6p"; depends=[randomForest rtweet SnowballC SparseM stringr tau tm]; }; needs = derive2 { name="needs"; version="0.0.3"; sha256="16dkjpijz3rz7kd5ggxsdg55iwd42nll1vk6g5ix4xdbqrx6cp9x"; depends=[]; }; - needy = derive2 { name="needy"; version="0.2"; sha256="1ixgpnwrg6ph1n5vy91qhl1mqirli9586nzkmfvzjrhdvrm0j5l0"; depends=[]; }; negenes = derive2 { name="negenes"; version="1.0-12"; sha256="0b82822vl86gni0pv5f6pjfzmks35i7q2rqkhgyb9z9c677g991q"; depends=[]; }; negligible = derive2 { name="negligible"; version="0.1.2"; sha256="11x199xpsrydsy0iwyivhp43x79a4v6wfz60yd9l6a5vwpn26j2v"; depends=[DescTools dplyr fungible ggplot2 lavaan MBESS nptest rockchalk tidyr WRS2]; }; neighbours = derive2 { name="neighbours"; version="0.1-2"; sha256="0sz8xmghv71ry884nyxma9y7wiqx0n82f3v5iw13dlgzr6z66qcz"; depends=[]; }; @@ -13006,26 +13081,27 @@ in with self; { neo4jshell = derive2 { name="neo4jshell"; version="0.1.2"; sha256="0dkdg8ljyv7pi6zkpsq5akkl35vrhkr78xvc2ky99gwjsr0z77hf"; depends=[fs magrittr R_utils ssh sys]; }; neo4r = derive2 { name="neo4r"; version="0.1.1"; sha256="0s4rjhn2mc8ca4p8p474a83dc277vrf7l968xwxkiac0d4fgbra7"; depends=[attempt data_table glue httr igraph jsonlite magrittr purrr R6 rlang rstudioapi shiny tibble tidyr tidyselect]; }; neonOS = derive2 { name="neonOS"; version="1.0.0"; sha256="11jgsf8c7rjfdbn9qljirzwvpnn4wckid4p4syx6py3dqjb4r19f"; depends=[curl data_table httr jsonlite]; }; - neonUtilities = derive2 { name="neonUtilities"; version="2.1.4"; sha256="1nx0d6r8ai3035rkk2s52q9kz1kg2w3cpcrqjk06f84wqd8cxyiv"; depends=[curl data_table downloader httr jsonlite pbapply R_utils stringr tidyr]; }; + neonUtilities = derive2 { name="neonUtilities"; version="2.2.0"; sha256="0azzi8qybxfkrz4wmn7z2420jkq9z5klyqqdbs18w5zpr3x30hyy"; depends=[curl data_table downloader httr jsonlite pbapply R_utils stringr tidyr]; }; neonstore = derive2 { name="neonstore"; version="0.4.4"; sha256="0fhjm6513kd4y3lry8dwcwk13ns92yk5h3san7ww2ahhdhy4hx9c"; depends=[DBI duckdb httr progress R_utils thor vroom zip]; }; nephro = derive2 { name="nephro"; version="1.3"; sha256="08gryzr53cd5gc8ks7v9jicgk4lxcwcr7zd8vzsqvy04sh3scw9i"; depends=[]; }; neptune = derive2 { name="neptune"; version="0.2.3"; sha256="04d5rdcvnik9rj58npvs5z1r6ngs9hzc24wzix64czcynkkvkad0"; depends=[ggplot2 htmlwidgets plotly reticulate rstudioapi this_path]; }; nesRdata = derive2 { name="nesRdata"; version="0.3.1"; sha256="1lxvg11g8nizfn8sghirq2749fs9i4w1wiaz3v1djqbkzqcqfrcj"; depends=[dataone dplyr purrr rappdirs readr]; }; - nestedcv = derive2 { name="nestedcv"; version="0.4.0"; sha256="160d1smwlf83m593n1jgx5qgzqzvj4zxqcxfwzdc1mx9gsng3mgq"; depends=[Boruta caret CORElearn data_table doParallel foreach ggplot2 glmnet hsstan matrixStats matrixTests pROC randomForest RcppEigen Rfast rlang SuperLearner]; }; - nestedmodels = derive2 { name="nestedmodels"; version="1.0.1"; sha256="1r0h520m98ys2bdam0gggzac7ij62f2i2s4d8v3y6p2jvz0kmkhd"; depends=[cli dplyr forcats generics glue lifecycle magrittr parsnip purrr recipes rlang rsample stringr tibble tidyr vctrs]; }; + nestedcv = derive2 { name="nestedcv"; version="0.4.4"; sha256="1zfdr42idrr7v76mkpvv58di8rqlw79c2k2pynfyaqxj3ac53dq0"; depends=[Boruta caret CORElearn data_table doParallel foreach ggplot2 glmnet hsstan matrixStats matrixTests pROC randomForest RcppEigen Rfast rlang SuperLearner]; }; + nestedmodels = derive2 { name="nestedmodels"; version="1.0.2"; sha256="065x6ggbn0naybbi5gjnyx2ryxg6062ya0fgj1k4sz3i2nrhjvwq"; depends=[cli dplyr forcats generics glue lifecycle magrittr parsnip purrr recipes rlang rsample stringr tibble tidyr vctrs]; }; nestfs = derive2 { name="nestfs"; version="1.0.2"; sha256="18w8bp02w7p1k0dm85523rhmsxww581ma4srvxbxq39kp8mfyabk"; depends=[dgof pROC]; }; nestr = derive2 { name="nestr"; version="0.1.2"; sha256="0qgd1sl6x5y70r3l4vf0qqynlrkdyq7mmpb8mwjn7f1hjnym1gaj"; depends=[magrittr rlang tidyselect vctrs]; }; net4pg = derive2 { name="net4pg"; version="0.1.1"; sha256="1a00bqskgl053wcwgmg7xsccybrq76bqaipdnf5zbm1dslir0jdv"; depends=[data_table graph magrittr Matrix]; }; netClust = derive2 { name="netClust"; version="1.0.1"; sha256="1h58ispdx8ddsnqrrmcxn2rbqb0hb89gpjg4p14mr7vhxw5c9zva"; depends=[Rcpp RcppArmadillo]; }; netCoin = derive2 { name="netCoin"; version="2.0.20"; sha256="1kmv8sfzyh7cgp4s86rw4znjqpckgw8xiqs6a144g7k2vlfm28fk"; depends=[haven igraph Matrix rD3plot]; }; - netSEM = derive2 { name="netSEM"; version="0.6.0"; sha256="0f8d9lw2ahap8i4dcl7039q4959wpq7d8h5n3kz5kwylmkf70lmh"; depends=[DiagrammeR DiagrammeRsvg gtools htmlwidgets knitr magrittr MASS png rsvg segmented svglite]; }; + netSEM = derive2 { name="netSEM"; version="0.6.1"; sha256="01yhqlax9vyhipw5cjg2mg9cbxj44g7mxlrsfa4mfsw22bd6dc6i"; depends=[DiagrammeR DiagrammeRsvg gtools htmlwidgets knitr magrittr MASS png rsvg segmented svglite]; }; netShiny = derive2 { name="netShiny"; version="1.0"; sha256="1k6dmhkjf29ww31c15jms0yxwyiqq1z7a9115zwbg620cjd3m6fm"; depends=[colourpicker DT future future_callr ggplot2 ggVennDiagram igraph ipc magrittr Matrix netgwas plotly promises readxl shiny shinyBS shinycssloaders shinydashboard shinyjs shinyscreenshot shinyWidgets visNetwork]; }; netUtils = derive2 { name="netUtils"; version="0.8.0"; sha256="02ik399hq58lfy2l4rhc21kkfcjkzycgjhdhgrvycn34gkw3ahjl"; depends=[igraph Rcpp RcppArmadillo]; }; netassoc = derive2 { name="netassoc"; version="0.7.0"; sha256="0hbyg31r9sjp0dyxlbsbw7r1kb1dwr0apilsw8saf1vlqwsiasga"; depends=[corpcor huge igraph infotheo vegan]; }; netchain = derive2 { name="netchain"; version="0.2.0"; sha256="1skpf1n6a17mjkcxqpl6vrskk04yvqa0v4n2zw9x5r1h46q9m6qk"; depends=[gtools igraph Matrix Rcpp stringr]; }; - netcmc = derive2 { name="netcmc"; version="1.0.1"; sha256="06484f7i0rf7p6c6i3g1kshbnm6h30qj4xjryjmxcm7yy09m9hdb"; depends=[coda ggplot2 MASS MCMCpack mvtnorm Rcpp RcppArmadillo RcppProgress]; }; + netcmc = derive2 { name="netcmc"; version="1.0.2"; sha256="0w5xnnfglg0nm59wwqh2dpwkz0zlly3r2997wncf5whz5j4vcy88"; depends=[coda ggplot2 MASS MCMCpack mvtnorm Rcpp RcppArmadillo RcppProgress]; }; netcom = derive2 { name="netcom"; version="2.1.6"; sha256="1i9d7w497qqjkwqvskbm1k5jj03pf84am8jifhhmxmmvd9sk6ldw"; depends=[clue doParallel dplyr expm foreach GenSA ggfortify ggplot2 ggraph igraph magrittr Matrix optimx pdist pracma reshape2 rlang tibble vegan]; }; netcontrol = derive2 { name="netcontrol"; version="0.1"; sha256="1gskb728ycnhz9a9g9ghm0dz3ajf3dzgyv23bsk9i01wj9hrxhc0"; depends=[expm MASS Matrix pracma Rcpp RcppArmadillo Rdpack]; }; + netdiffuseR = derive2 { name="netdiffuseR"; version="1.22.5"; sha256="1brcqkxvc7h015hgmxff4449zvgzl7rx6lm52x0hchc6zjb0fi16"; depends=[boot igraph MASS MatchIt Matrix network networkDynamic Rcpp RcppArmadillo sna SparseM viridisLite]; }; netgen = derive2 { name="netgen"; version="1.3.2"; sha256="1yqi4rb6w9ipxgbl1j1s2s81cg7nzrn65irn5gs82hsq94d6vv2j"; depends=[BBmisc checkmate ggplot2 igraph lhs mvtnorm stringr]; }; netgsa = derive2 { name="netgsa"; version="4.0.4"; sha256="02127r3vskcksrd893qrs1wqwkbw3b8p33ybgvbwd9j4lxgifmr2"; depends=[AnnotationDbi corpcor data_table dplyr genefilter glassoFast glmnet graph graphite httr igraph jsonlite magrittr Matrix msigdbr org_Hs_eg_db quadprog Rcpp RcppEigen RCy3 reshape2 rlang]; }; netgwas = derive2 { name="netgwas"; version="1.14.1"; sha256="07nq2pb031grq7g4ysk9pk05dvn3x7cq2l9vdsggi1jvyv5fr4vv"; depends=[glasso huge igraph MASS Matrix qtl tmvtnorm]; }; @@ -13033,7 +13109,7 @@ in with self; { netjack = derive2 { name="netjack"; version="1.2.0"; sha256="060ygb0kxi0gx1ya38cmf5hhyy6jkwq5519azdqhq5i324cwzzm7"; depends=[brainGraph ggplot2 igraph Rdpack]; }; netmap = derive2 { name="netmap"; version="0.1.1"; sha256="0cqfxpn3pcbh56a26azxzm896g1m0z289870gb79n5nz69wm7dci"; depends=[ggnetwork igraph network rlang sf sna]; }; netmediate = derive2 { name="netmediate"; version="0.1.0"; sha256="1jk8knnqi59sfkpfaqi42y416j0qvmjy7ghjm2kkf2wvxwmym3q0"; depends=[btergm ergm ergMargins gam intergraph lme4 MASS network plm plyr RSiena sna VGAM]; }; - netmeta = derive2 { name="netmeta"; version="2.5-0"; sha256="07fr06za4k57kr84ni35gbfjwaxdfgrf9jpds7nlmkwhwybm4462"; depends=[ggplot2 magic MASS meta metafor]; }; + netmeta = derive2 { name="netmeta"; version="2.6-0"; sha256="1xihabkyv5hljyklmsi2h2w63yngibkbfv595r9nfgyp4b9pgslp"; depends=[ggplot2 magic MASS meta metafor]; }; netmhc2pan = derive2 { name="netmhc2pan"; version="1.3.1"; sha256="0q98rar7iglwxmf1274wrjcr7kp544ayrjhd286x68jmf51cqyrg"; depends=[assertive devtools dplyr rappdirs readr seqinr stringr testit tibble]; }; netplot = derive2 { name="netplot"; version="0.1-1"; sha256="11s6gcxcwbnd5x3sb4ryi4ks1bsbf7ylgc0yrygv58ipisxb2780"; depends=[igraph network sna]; }; netrankr = derive2 { name="netrankr"; version="1.2.0"; sha256="1b6wcvwqyqjfi1v8k8bf0ydsiyizpcgy47jf4z6v50sj22lwvxpn"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; @@ -13042,6 +13118,7 @@ in with self; { nets = derive2 { name="nets"; version="0.9.1"; sha256="00adkyd2hm8aynpnk4avzss8fxkbaai74n5cf03vpwyc306jq0d7"; depends=[igraph]; }; netseg = derive2 { name="netseg"; version="1.0-1"; sha256="075qm8z8i2l1q3s22ql55ih752b2n5gnmhkmgbd7qa44zkf3rj0w"; depends=[igraph]; }; netstat = derive2 { name="netstat"; version="0.1.2"; sha256="0d26w0xyi5645132bxybsy8zadfcfifbwp5s22r0cnd546czjvz8"; depends=[]; }; + nett = derive2 { name="nett"; version="1.0.0"; sha256="1prb1zskhc50jzqmh1cdk4lljr4xqp4aaaaw1r66hmpy0d9ghhph"; depends=[foreach magrittr Matrix Rcpp RcppArmadillo]; }; nettskjemar = derive2 { name="nettskjemar"; version="0.1.4"; sha256="0cghjk9hw3m0b6xalqg0p7v60jvshcfy6z5sfl4p2z6y17pkf72b"; depends=[dplyr here httr jsonlite pbapply purrr rvest tidyr usethis xml2]; }; network = derive2 { name="network"; version="1.18.0"; sha256="0nyf8i94lnqm4gfjz1szbwvl4c438xg3rjdkqr18fz68fh0v3x2r"; depends=[magrittr statnet_common tibble]; }; networkABC = derive2 { name="networkABC"; version="0.8-1"; sha256="0754770z3db7faadh8bxk0h70frjk6v8zjklkhclxnach1vag2k6"; depends=[network RColorBrewer sna]; }; @@ -13071,22 +13148,22 @@ in with self; { newsmap = derive2 { name="newsmap"; version="0.8.1"; sha256="0r7ldw78wi66li6xgski5g0fa0sfwya6jw79ag06i9zgnzmswd85"; depends=[Matrix quanteda quanteda_textstats stringi]; }; newsmd = derive2 { name="newsmd"; version="0.4.0"; sha256="1pzsblkvs374nc6795llm9lbqj5z410g1mgr3q4fgpm0398zmsrv"; depends=[R6]; }; nextGenShinyApps = derive2 { name="nextGenShinyApps"; version="1.5"; sha256="1zj37yqrnxzlrjz8bcrskfl11ql1q27mfffx3342gllkfmpgd8vp"; depends=[htmltools shiny]; }; - nfer = derive2 { name="nfer"; version="1.1.0"; sha256="0kl7yks8m7ylm3vlmffjy1fgjchf4pym49jgpnq9jbkysvvbxpb0"; depends=[]; }; + nfer = derive2 { name="nfer"; version="1.1.1"; sha256="0g54jfy6cdzd9kamyqqcyx1v9pml2vzyi8jfmdpnw8r0jj6n7x2l"; depends=[]; }; nfl4th = derive2 { name="nfl4th"; version="1.0.2"; sha256="0dx5ipnfnsii0imnxsi3vyfvihfdg0sim5vhpchi0ggcnjpqm3k4"; depends=[dplyr glue httr janitor jsonlite magrittr mgcv nflfastR nflreadr purrr stringr tibble tidyr tidyselect xgboost]; }; - nflfastR = derive2 { name="nflfastR"; version="4.4.0"; sha256="0nbizfrc0cv9vi8izjc8r15jq4pyrxd0av37kycxfqmb6kr8z8ax"; depends=[cli curl data_table dplyr fastrmodels furrr future glue janitor mgcv nflreadr progressr rlang stringr tibble tidyr tidyselect xgboost]; }; + nflfastR = derive2 { name="nflfastR"; version="4.5.0"; sha256="0q88csinbns5khcnls891j3a8npskjr47g0rcqk5bxrr51p9i5yg"; depends=[cli curl data_table dplyr fastrmodels furrr future glue janitor mgcv nflreadr progressr rlang stringr tibble tidyr tidyselect xgboost]; }; nflplotR = derive2 { name="nflplotR"; version="1.1.0"; sha256="13ibhri9x5k4waay230s2xhc9i8qm51glq0bgdc1ily8grgrxhgs"; depends=[cachem cli data_table ggplot2 magick magrittr memoise nflreadr rappdirs rlang scales]; }; nflreadr = derive2 { name="nflreadr"; version="1.3.1"; sha256="1zh5dhj6fv7f1x36k597qwi28csbvvj4n6dgpsqzx0al0b0na44v"; depends=[cachem cli curl data_table glue memoise rappdirs rlang]; }; nflseedR = derive2 { name="nflseedR"; version="1.1.0"; sha256="16qpmhb9i220blihy6r8ak9rf3pb228q305qszz57zkz1hhk0508"; depends=[cli crayon curl dplyr furrr future glue gsubfn magrittr nflreadr progressr purrr readr rlang tibble tidyr]; }; nflverse = derive2 { name="nflverse"; version="1.0.2"; sha256="00mjclyf0ph2wi3jbbxyhgckj9kppm8xhy10z5n6kskyw4wnvab0"; depends=[cli crayon magrittr nfl4th nflfastR nflplotR nflreadr nflseedR rlang rstudioapi]; }; nftbart = derive2 { name="nftbart"; version="1.4"; sha256="1xg3p2bi4j6ijg20kj1wp3alrd8bnda02fk50vm5k507wcxf4473"; depends=[nnet Rcpp survival]; }; ngboostForecast = derive2 { name="ngboostForecast"; version="0.1.1"; sha256="019l9w7m6lkbf0m9mlsd24agjasbzi7dmy72faq1s4xg49a5xa9a"; depends=[dplyr forecast magrittr R6 reticulate]; }; - ngram = derive2 { name="ngram"; version="3.2.1"; sha256="1zjp5gn82b733a0glqrpvm1rqmqk0apni9fbm0jszbnc3y9h478z"; depends=[]; }; - ngramr = derive2 { name="ngramr"; version="1.9.0"; sha256="1imvfawavrr83bnmhwwr5icm43f7nmr77nwsz262zh39s4a55f4z"; depends=[cli curl dplyr ggplot2 httr rjson rlang scales stringr textutils tibble tidyr xml2]; }; + ngram = derive2 { name="ngram"; version="3.2.2"; sha256="04cafc0i3605vlxmiwfyf91572ppg3wmm0hi50y9x7ai12bznchc"; depends=[]; }; + ngramr = derive2 { name="ngramr"; version="1.9.1"; sha256="0vvlml9s6v5vix1h723bs3mbz6cpa2mv4gbh0mqvfxssba7ki05i"; depends=[cli curl dplyr ggplot2 httr rjson rlang scales stringr textutils tibble tidyr xml2]; }; ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; ngspatial = derive2 { name="ngspatial"; version="1.2-2"; sha256="09hdvmbna4m62zv18k5kj9718wzw7p43wnal2j6aa0m5sd2rx9rz"; depends=[batchmeans Rcpp RcppArmadillo]; }; nhanesA = derive2 { name="nhanesA"; version="0.7.1"; sha256="0mjcb26irvhqsicnnhx8w32gx9w50jw0rwm2x33wvdf0qy42gzdw"; depends=[foreign magrittr plyr rvest stringr xml2]; }; nhdR = derive2 { name="nhdR"; version="0.5.9"; sha256="0zgcsj7469dpmfda62322yxamq9lahl3d9nxizdp48kh0xrmx8pl"; depends=[curl digest dplyr foreign ggplot2 httr maps memoise purrr rappdirs rgdal rlang rvest sf stringr units xml2]; }; - nhdplusTools = derive2 { name="nhdplusTools"; version="0.5.7"; sha256="00xr2s1ih86kfbxihqaar1drqqy6n967sxq19k669d0dg0r3pjzq"; depends=[dataRetrieval dplyr fst httr jsonlite magrittr pbapply prettymapr R_utils RANN rosm sf tidyr units xml2 zip]; }; + nhdplusTools = derive2 { name="nhdplusTools"; version="0.6.1"; sha256="063vskxilrhx801cgp7hl8w81k4qig6hsyj9xlfdzjjrhyan31pi"; depends=[dataRetrieval dplyr fst httr jsonlite magrittr pbapply prettymapr R_utils RANN rlang rosm sf tidyr units xml2 zip]; }; nhlapi = derive2 { name="nhlapi"; version="0.1.4"; sha256="1c5s7fd9agzk20xi8v38dk8ih6lmn8c90mxncyr996bhipgr7vl3"; depends=[jsonlite]; }; nhlscrape = derive2 { name="nhlscrape"; version="0.1.3"; sha256="0x6y747j6lha3jw4v2wavgd12xw5nx4m8biv9rmq9z0qy53vncjc"; depends=[DBI httr jsonlite RSQLite rvest xml2]; }; nhm = derive2 { name="nhm"; version="0.1.0"; sha256="1yf9hnbmfb7xj8mbhnq40wvd0pd88x9qspy1jr3x0n8nb75i3jlp"; depends=[deSolve maxLik mvtnorm]; }; @@ -13097,16 +13174,17 @@ in with self; { nic = derive2 { name="nic"; version="0.0.1"; sha256="0nr84a0vvl682ahp9xq50y6mk5dsircgz4l2rqp0jgv2h7fkd0n2"; depends=[]; }; nice = derive2 { name="nice"; version="0.4-1"; sha256="1p8vmimiq9sbjvbx6c2wqwwkpnzw4kkdvjry6qyadmm3frwhj5qb"; depends=[]; }; nicheROVER = derive2 { name="nicheROVER"; version="1.1.0"; sha256="0chg2bnz929mq17qylf3f57g6bg4ih6w20019yh7vkz7mwjnvi3p"; depends=[]; }; + nieve = derive2 { name="nieve"; version="0.1.1"; sha256="10g3krcjzyjqhw6wdyk8ck009jalav1ybla93klzr894ildl1agh"; depends=[]; }; nifti_io = derive2 { name="nifti.io"; version="1.0.0"; sha256="03p0gn6id5bkn0qxf7v3splykpi9wpbasrhf2937gp25bsynrpjm"; depends=[]; }; nightmares = derive2 { name="nightmares"; version="0.0.2"; sha256="1dmqrb17ncwazy1nb0zzfy7fq51ah7rz0xmhmmx6d30paaix2vc7"; depends=[raster rgdal sp]; }; nilde = derive2 { name="nilde"; version="1.1-7"; sha256="014scmwhq9i66i2mhvrb71y6ccv0xzjqfgm2sqff9lzjv9smy2im"; depends=[]; }; nima = derive2 { name="nima"; version="0.6.2"; sha256="0n8r8h1m0v0ssbpv6p32jby49f45qbicwr0awm7x054p48qk49cy"; depends=[assertthat dplyr ggplot2 ggthemes gridExtra gtools scales]; }; - nimble = derive2 { name="nimble"; version="0.12.2"; sha256="06qs22q0l1iv82q5q48f5hpn0jxy8pds378k9cxhnzws2nms7xra"; depends=[coda igraph R6]; }; + nimble = derive2 { name="nimble"; version="0.13.0"; sha256="06y745jch8glixnxcgxi1dcawk8xz2gjjl4zb8c23xwfwa5lxp36"; depends=[coda igraph R6]; }; nimbleAPT = derive2 { name="nimbleAPT"; version="1.0.4"; sha256="0615fm6sa6nf607ay98r81m0pp8yvydpwzn3972imf87irps2k3l"; depends=[nimble]; }; nimbleCarbon = derive2 { name="nimbleCarbon"; version="0.2.1"; sha256="1dzkc0ay617a1l6m919sqxfcnx0z9kwfykn11f9hz6ddf4wgkysm"; depends=[coda doSNOW foreach nimble rcarbon snow]; }; nimbleEcology = derive2 { name="nimbleEcology"; version="0.4.1"; sha256="1z4byxsana1fa2y7qhmiqbb8ana6zbas0cmbgcc703mqh1642jb2"; depends=[nimble]; }; nimbleNoBounds = derive2 { name="nimbleNoBounds"; version="1.0.1"; sha256="0ac35ylwbgsw261l84fv11mnddrqxzdyvv1f9nk73jxv102z0ihj"; depends=[nimble]; }; - nimbleSCR = derive2 { name="nimbleSCR"; version="0.2.0"; sha256="19y93cvnp3x4jnff4210fc1cp04mv0mnm1as6svsp8swizm2sb95"; depends=[nimble]; }; + nimbleSCR = derive2 { name="nimbleSCR"; version="0.2.1"; sha256="1gyc93isivvq0b8fv4pb2g3mpr1n7jfpj9bs86a417iwbf34x4a4"; depends=[nimble]; }; nimbleSMC = derive2 { name="nimbleSMC"; version="0.10.1"; sha256="1bxm729v40zd9gflllp8plj7gk325mc4gdlmsvkrgp31rslkxx76"; depends=[nimble]; }; nipals = derive2 { name="nipals"; version="0.8"; sha256="0nv7h68hysxnpiinmgw6v3bz4ya53c0p96k9bfvcmalfb7hs8j5z"; depends=[]; }; nipnTK = derive2 { name="nipnTK"; version="0.1.0"; sha256="0imy2x1h9d842ssw7hmmh21c4mj7s6y05mmjin1270skbnrk2zmr"; depends=[bbw withr]; }; @@ -13119,6 +13197,7 @@ in with self; { nlaR = derive2 { name="nlaR"; version="0.4.0"; sha256="05ipw2j4w5r3bpmhqh742yqz5qihx36jnsq08bli8jwsqha9vm8h"; depends=[rappdirs]; }; nlcv = derive2 { name="nlcv"; version="0.3.5"; sha256="1ywnm8a13ifqa1bxnf659h1j6mg9iy02vaszyh9p966ps9c1pjab"; depends=[a4Core Biobase e1071 ipred kernlab limma MASS MLInterfaces multtest pamr randomForest RColorBrewer ROCR xtable]; }; nleqslv = derive2 { name="nleqslv"; version="3.3.3"; sha256="0cy65bqkmnnr8v0x1cag84caxwdxyr0yw4w443apxzfxjp7dyiif"; depends=[]; }; + nlgm = derive2 { name="nlgm"; version="1.0"; sha256="03byqqj8ayq7hbaab4cfrk0nbxmiiq2c2i98szfydzkimhrw922a"; depends=[ggplot2 Rfast Rfast2]; }; nlist = derive2 { name="nlist"; version="0.3.3"; sha256="1wq7bp834c7cl37wbrgd9ars3mm0s5c3l3fxlrry728a27c27f9h"; depends=[abind chk coda extras generics lifecycle purrr term tibble universals]; }; nlive = derive2 { name="nlive"; version="0.1.0"; sha256="03nxazkb0ndriafh28dfqmyrzcpxa0fqflnlpbkjaa83g4im75j3"; depends=[dplyr ggplot2 knitr lcmm nlraa Rmisc saemix sitar sqldf]; }; nlme = derive2 { name="nlme"; version="3.1-160"; sha256="024a1pfdbv5dp1cbfk424n1rwfxw4g92yrjcfy1v0xj834ilcifl"; depends=[lattice]; }; @@ -13126,9 +13205,11 @@ in with self; { nlmeVPC = derive2 { name="nlmeVPC"; version="2.5"; sha256="0jrbwai8q3qvr6zm5q8pn89gslh2kp2sddwkggcjisjcri3cny9f"; depends=[ggplot2 Hmisc optimx quantreg Rcpp RcppArmadillo timeDate]; }; nlmixr2 = derive2 { name="nlmixr2"; version="2.0.8"; sha256="14akzman4r99ynkdpif0y6fjgxahbha5bk49g59924azwnhin7hd"; depends=[lotri magrittr nlmixr2data nlmixr2est nlmixr2extra nlmixr2plot rxode2]; }; nlmixr2data = derive2 { name="nlmixr2data"; version="2.0.7"; sha256="06wchhd5rg76vws8lvh5yf8cia7d09ds61h9zizqk7j9azkx004j"; depends=[]; }; - nlmixr2est = derive2 { name="nlmixr2est"; version="2.1.1"; sha256="0bnm7zgbzarwj4xbimivpnxmxqih3h52c4hyb6wz1816z35cs8lc"; depends=[backports BH checkmate cli dparser knitr lbfgsb3c lotri magrittr Matrix minqa n1qn1 nlme nlmixr2data Rcpp RcppArmadillo RcppEigen rex Rvmmin rxode2 rxode2parse rxode2random StanHeaders symengine ucminf vpc]; }; + nlmixr2est = derive2 { name="nlmixr2est"; version="2.1.3"; sha256="1mxax6r5zlj96a5khfq4q7ksgzq577axll1aniqa76d1j9vjm5nq"; depends=[backports BH checkmate cli knitr lbfgsb3c lotri magrittr Matrix minqa n1qn1 nlme nlmixr2data Rcpp RcppArmadillo RcppEigen rex Rvmmin rxode2 rxode2parse rxode2random StanHeaders symengine ucminf vpc]; }; nlmixr2extra = derive2 { name="nlmixr2extra"; version="2.0.8"; sha256="1sxbkqwhj6lg49c3ah4kylvak1lgj2was6mqsh82klvp72fd61fd"; depends=[checkmate cli crayon data_table digest ggplot2 ggtext lotri nlme nlmixr2est Rcpp RcppArmadillo rxode2 symengine]; }; + nlmixr2lib = derive2 { name="nlmixr2lib"; version="0.1.0"; sha256="12nzkhz68kw4k21bgmp7w9dhcwq7q7lz09riambgyr8gqbmvzn3s"; depends=[checkmate cli nlmixr2est rxode2]; }; nlmixr2plot = derive2 { name="nlmixr2plot"; version="2.0.7"; sha256="0bpb9pxdjpwg3kqldbmw8vlq2w843dgyv0q13265kbcpwqhqmnma"; depends=[ggplot2 nlmixr2est nlmixr2extra rxode2 vpc xgxr]; }; + nlmixr2rpt = derive2 { name="nlmixr2rpt"; version="0.1.0"; sha256="0imkjshj2cibxs0zqddwfizpdf7v4b74m5p813j2laaydfnnlkyr"; depends=[cli dplyr flextable ggforce ggplot2 ggpubr nlmixr2extra onbrand rxode2 stringr xpose xpose_nlmixr2 yaml]; }; nlmrt = derive2 { name="nlmrt"; version="2016.3.2"; sha256="1g0qq0a933ay65gkp04qgn2wqk6vw79pj2a228c2ski4rcmkjxyn"; depends=[]; }; nlnet = derive2 { name="nlnet"; version="1.4"; sha256="13lv4b6chsjrhimny3wc1y9ljgbxmm1byj4j04n4vj8icn87gyfd"; depends=[coin e1071 earth fdrtool igraph randomForest ROCR TSP]; }; nloptr = derive2 { name="nloptr"; version="2.0.3"; sha256="1mqnjswm0dl6vqc8b2s5k3n1mhanaha3l33vh68dh6zx8q9aq9kv"; depends=[testthat]; }; @@ -13160,7 +13241,7 @@ in with self; { nmslibR = derive2 { name="nmslibR"; version="1.0.6"; sha256="1biaaifcnzjpj6prq04avgfz29n1v65kgpir8jrg4ndb6krjwh94"; depends=[KernelKnn Matrix R6 Rcpp RcppArmadillo reticulate]; }; nmw = derive2 { name="nmw"; version="0.1.4"; sha256="1vj7b2p40x0h3xp45qzar86i9439mj8y3r5hnlbwa025jqdf2g0q"; depends=[numDeriv]; }; nnGarrote = derive2 { name="nnGarrote"; version="1.0.4"; sha256="0km7vx9qkfijj2af5ma4q88mhgkrw361hpv3n8dyzpr8654hrw4v"; depends=[glmnet]; }; - nnTensor = derive2 { name="nnTensor"; version="1.1.8"; sha256="12f2mfkzamrjd9yjgrljbw5y1jg5805pc8371zs7qfn6bganmhv8"; depends=[fields ggplot2 MASS plot3D rTensor tagcloud]; }; + nnTensor = derive2 { name="nnTensor"; version="1.1.10"; sha256="16lv17dgzyb5jgsl1j50q84jv78ppnfwk5hm7y4m9962c2dyqw33"; depends=[fields ggplot2 MASS plot3D rTensor tagcloud]; }; nna = derive2 { name="nna"; version="0.0.2.1"; sha256="17cz1jf7iv61wspqldfdwbdjhlr0wq09idkzlivfb8aik5w9f0z5"; depends=[]; }; nncc = derive2 { name="nncc"; version="1.0.0"; sha256="1kgsz28j4ra0x3i8454fjmil7g62r2mjvnbljcp008q4slnp47sv"; depends=[cluster dplyr formula_tools furrr ggplot2 igraph mgcv mice rlang tidyr]; }; nnet = derive2 { name="nnet"; version="7.3-18"; sha256="1l73v6l9ma0vsg4za3c6i3d6yjj7bpdmakbmrzp7205hbkxyp6nj"; depends=[]; }; @@ -13175,7 +13256,7 @@ in with self; { noaastormevents = derive2 { name="noaastormevents"; version="0.2.0"; sha256="1d93h8av0bbv7a56g6m000qpsnzqpfdla0fmcj5y8fbbqkipxnfr"; depends=[choroplethr choroplethrMaps data_table dplyr forcats ggplot2 hurricaneexposure lubridate magrittr maps plyr RColorBrewer RCurl rlang stringr tibble tidyr viridis XML]; }; noah = derive2 { name="noah"; version="0.1.0"; sha256="1ln23lp4c70fin9sjjhm4ngy47f8sk2mcljp5q449b7hq8gqi12c"; depends=[assertthat crayon digest dplyr hash magrittr purrr R6 rlang stringr]; }; noctua = derive2 { name="noctua"; version="2.6.0"; sha256="17j23sjr0wf9jipc12piq51w7drdm84qqd7jp4mvkym3lg4d19yb"; depends=[data_table DBI paws uuid]; }; - nodbi = derive2 { name="nodbi"; version="0.8.1"; sha256="0zslvf2hivc1hfp6c9sijc12mzdxy0byrhcs74f2bf0q0v9vcmx6"; depends=[DBI elastic jqr jsonify jsonlite mongolite RPostgres RSQLite sofa stringi uuid]; }; + nodbi = derive2 { name="nodbi"; version="0.9.1"; sha256="1hn0wy2ry9l3wwqrshmf82cxigkm16wycwprv458bcvb5k6ayy5m"; depends=[DBI jqr jsonify jsonlite stringi uuid]; }; node2vec = derive2 { name="node2vec"; version="0.1.0"; sha256="03gfpn4xgmdwlrpwi9pdpnh6k75mwp85j6vywkj0jsxhz3rbg95g"; depends=[data_table dplyr igraph rlist vctrs vegan word2vec]; }; nodeSub = derive2 { name="nodeSub"; version="1.2.5"; sha256="11a744gdfb2lwya01g1gg4165f692hjwym40r0rdi1y4l0jk8l8h"; depends=[ape apTreeshape assertthat babette beastier beautier DDD geiger mauricer pbapply phangorn phylobase rappdirs Rcpp Rmpfr stringr testit tibble tracerer]; }; nodiv = derive2 { name="nodiv"; version="1.4.0"; sha256="1k7pr9d1mgxw3szxcmnkkz498x7629wf2z65qlclywka3xgzpkxc"; depends=[ape picante raster sp vegan]; }; @@ -13187,7 +13268,7 @@ in with self; { noisySBM = derive2 { name="noisySBM"; version="0.1.4"; sha256="1zdkxr48kvpqs49figxxznq3d45nalja92lyal71m066s1blc6dg"; depends=[ggplot2 gtools RColorBrewer]; }; noisyr = derive2 { name="noisyr"; version="1.0.0"; sha256="05nvxz5qa4lsi62va74yq4m68nlacjkl8xj5nsq7dik3357y53dr"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 IRanges magrittr philentropy preprocessCore Rsamtools tibble]; }; nombre = derive2 { name="nombre"; version="0.4.1"; sha256="16hpr628j8rzxg5k71qsgc9xhz1w4gpi3fry5vp1mbwvalmlish2"; depends=[fracture]; }; - nomclust = derive2 { name="nomclust"; version="2.5.0"; sha256="17vqxbx5bpja2fxp83w0sbgbs61b2vaak9zzvvxkicxqwk09ix2v"; depends=[cluster Rcpp]; }; + nomclust = derive2 { name="nomclust"; version="2.6.2"; sha256="16pxv2vqikias18835crjfx5yignckvrw4imwqi18463mg6y7v9b"; depends=[cluster Rcpp]; }; nominatimlite = derive2 { name="nominatimlite"; version="0.1.6"; sha256="1zzlqhn26bgag2sjq57crldyw0q0cs56l6c69xqp15w88022d32q"; depends=[dplyr jsonlite rlang sf tibble]; }; nomisr = derive2 { name="nomisr"; version="0.4.7"; sha256="0mf301nhsl71h79jxfkwa27j5nifsxp7y6vxbnx87rybr80b3hg1"; depends=[dplyr httr jsonlite rlang rsdmx snakecase tibble]; }; nomnoml = derive2 { name="nomnoml"; version="0.2.5"; sha256="1c1pv3c1s6cdc75malnhy69cc9za3hmikd46d35x1n2ww54lmldc"; depends=[htmlwidgets lifecycle png rlang webshot]; }; @@ -13211,7 +13292,7 @@ in with self; { nor1mix = derive2 { name="nor1mix"; version="1.3-0"; sha256="1817wcvlmxs70vs4db0jkxd7i037744zz8ay3c2a9949z29fxr4w"; depends=[]; }; nord = derive2 { name="nord"; version="1.0.0"; sha256="1gisqca85vzbqq5hs5bgqjgrjyksxj176x97kv9vv6mwll8kijl9"; depends=[ggplot2]; }; nordklimdata1 = derive2 { name="nordklimdata1"; version="1.2"; sha256="0c2hbh3qy8nrs275lxpzfgqsfgwp81m4kv0layvnjj09fcybm54x"; depends=[]; }; - norgeo = derive2 { name="norgeo"; version="2.1.1"; sha256="08arc9hkya2ckqp603ppxp6akfdwwgy2l2x6vcqw4saf9b2anzpy"; depends=[data_table DBI httr jsonlite magrittr odbc RSQLite writexl]; }; + norgeo = derive2 { name="norgeo"; version="2.1.2"; sha256="0ac0qc3vg012ndk8c50xma636k32mzhd7z9i434d1d6iz2fy3gn9"; depends=[data_table DBI httr jsonlite magrittr odbc RSQLite writexl]; }; norm = derive2 { name="norm"; version="1.0-10.0"; sha256="1iqcsa7mj9ahnkbsri0cf2wlhh2bv86vwsh3iwihh42cywd7k123"; depends=[]; }; norm2 = derive2 { name="norm2"; version="2.0.4"; sha256="0ahz6x59k00pqalzjc3ajiby1ysmarjssga9amwh9vd6vmzzyfb7"; depends=[]; }; normalizeH = derive2 { name="normalizeH"; version="1.0.0"; sha256="19lychfrv57yk245rzais4hx17csz1s6wm5vk6p7ypr6h9slf2cq"; depends=[]; }; @@ -13236,13 +13317,14 @@ in with self; { nparcomp = derive2 { name="nparcomp"; version="3.0"; sha256="1cs1idaylxdajb9vwpp6rkk56178i4c9nd0rxj8jbmdr56w4nrgq"; depends=[multcomp mvtnorm]; }; nparsurv = derive2 { name="nparsurv"; version="0.1.0"; sha256="1qy9qkkpqrk49vjxbyvl25i4kfk0py6v64izd8lmaw38dynybpy2"; depends=[survival TH_data]; }; npcopTest = derive2 { name="npcopTest"; version="1.03"; sha256="1kpa3avi95aa93y038f4zqhhdp8vdscdk0c6397qmqjg34hf1dnr"; depends=[]; }; - npcp = derive2 { name="npcp"; version="0.2-2"; sha256="187vz2nvv7352qv9nry96rcjf0w4zi19xhpbg0jljbqqjfn7abi5"; depends=[]; }; + npcp = derive2 { name="npcp"; version="0.2-4"; sha256="0w3zimljr2cz1bjhpgcv8qvkrhhh3jbd7bqi2yvrh05lpcxxagh0"; depends=[sandwich]; }; npcs = derive2 { name="npcs"; version="0.1.0"; sha256="00gxi2yalp7pcykxmm1kafv3fpyqwc7xvmv10z6x3yngk62rj0r6"; depends=[caret dfoptim e1071 foreach formatR magrittr MASS naivebayes nnet randomForest rpart smotefamily]; }; npcure = derive2 { name="npcure"; version="0.1-5"; sha256="0hf6w8w76qmjdsd6zgg85jj5ypmmg1a1ryzqwnxcypsdjxaq539z"; depends=[permute zoo]; }; - npde = derive2 { name="npde"; version="3.2"; sha256="17p24djwl9nxhvzb9hg2iqj2vak0h55zshwgnsk98gj4z4zaqwwr"; depends=[ggplot2 gridExtra mclust rlang scales testthat]; }; + npde = derive2 { name="npde"; version="3.3"; sha256="1my925wrl3izhidim49z787pc6fvh41kzgdqx24llgz8wsa9xb6q"; depends=[ggplot2 gridExtra mclust rlang scales]; }; nph = derive2 { name="nph"; version="2.1"; sha256="100x7ar498s18rs8m4bx0kf4h8vqk1clb4z4kdnlni16lrpc90hy"; depends=[ggplot2 muhaz multcomp mvtnorm survival]; }; nphPower = derive2 { name="nphPower"; version="1.0.0"; sha256="0jqrbjm56nmhrmhsidz0bzyifq6kpqch8r64j8vd98b7xgcb6w4h"; depends=[MASS mvtnorm survival zoo]; }; nphRCT = derive2 { name="nphRCT"; version="0.1.0"; sha256="0b29izx3rz17g0jx72s33jj8ps0z3kq8fj2v0035hcjacnswz9ya"; depends=[ggplot2 purrr survival]; }; + npi = derive2 { name="npi"; version="0.2.0"; sha256="0akf9m46iy18nqm678sga1dxq1135jj33yrxz30yhd75w6nicgri"; depends=[checkLuhn checkmate curl dplyr glue httr magrittr purrr rlang stringr tibble tidyr]; }; nplplot = derive2 { name="nplplot"; version="4.6"; sha256="1sxmz0cl15fdc0s987nwjnl6ywxg4fqs8qnm5nkcbyj6b9jzcbwy"; depends=[]; }; nplr = derive2 { name="nplr"; version="0.1-7"; sha256="1h3qv9dlw2gx8km3slyvrl588nif1n87df8xwmm6p75ziqhn2f56"; depends=[]; }; nplyr = derive2 { name="nplyr"; version="0.1.0"; sha256="1cq4qq7d4xkvwdw1byxigxii2kmv899c4svjg0vg3sxxf8wvz6ix"; depends=[assertthat dplyr purrr rlang]; }; @@ -13253,7 +13335,6 @@ in with self; { npordtests = derive2 { name="npordtests"; version="1.2"; sha256="1axzcyy45h3rs67m0i3cvwbmza1mnmraxan9j4zlpxdd5x9nz4h8"; depends=[]; }; nppbib = derive2 { name="nppbib"; version="1.2-0"; sha256="1nn6wf89jhr3gy4rcd6px0cd5b1bsr7pbaxng4adba8n3yrss7vs"; depends=[]; }; npphen = derive2 { name="npphen"; version="1.5.2"; sha256="1d585rz07ldmmfcsrb11nl2f7jry2p0cc5dm8vlwr1jv7ag0r9y5"; depends=[ks lubridate raster rgdal snow]; }; - nprcgenekeepr = derive2 { name="nprcgenekeepr"; version="1.0.5"; sha256="1j6pfc694yf1m42a0fhlbh5wdbmgs61fswbw7083h69d2sr2zq05"; depends=[anytime futile_logger htmlTable lubridate Matrix plotrix readxl Rlabkey rlang shiny stringi WriteXLS]; }; npreg = derive2 { name="npreg"; version="1.0-9"; sha256="10pgcjhiannvxkbsw3ywkjzmgsq2m7dqwqhxkfcdnbc052n7s6di"; depends=[]; }; npregderiv = derive2 { name="npregderiv"; version="1.0"; sha256="1k873cs3rs15l13z8017n4anacandx7di6yk1zlamcc5p3vlh59n"; depends=[]; }; npregfast = derive2 { name="npregfast"; version="1.5.2"; sha256="1d2p23qqwa06rxfl5v9bcvq2j6pcsvjywq74qgrflkjk45g2kjb5"; depends=[doParallel foreach ggplot2 mgcv sfsmisc shiny shinyjs wesanderson]; }; @@ -13272,9 +13353,9 @@ in with self; { nsapi = derive2 { name="nsapi"; version="0.1.1"; sha256="06xf2p6f911vwpzky47r35fjgjvlhp13p9pf1zlvjrv66kdw8vbp"; depends=[crul xml2]; }; nsarfima = derive2 { name="nsarfima"; version="0.2.0.0"; sha256="0sv63anrsh0ajfvvkb44zsvc7sxws3xpsgwxqa951gy98w8h58g5"; depends=[]; }; nscancor = derive2 { name="nscancor"; version="0.6.1-25"; sha256="183kvzlln5lhmi51dm0skq1165c3hhy1yz5h2g7nxwqk2b4p23xj"; depends=[]; }; - nsdr = derive2 { name="nsdr"; version="0.1.1"; sha256="1p73aj465lk52n3dikkqi54zm2f9v00ikpmry10p42qhfkgrw61l"; depends=[]; }; - nse2r = derive2 { name="nse2r"; version="0.1.5"; sha256="1gwq8x3sn2f4p3yivmg2dljpdjcwsy2s6467pnwlcjdmr3sqgv2b"; depends=[httr jsonlite magrittr rvest xml2]; }; - nseval = derive2 { name="nseval"; version="0.4.2"; sha256="17zs7x86qv01c6s6mw49xdvslpxbz0cm3pfalli58qh83hh3rlks"; depends=[]; }; + nse = derive2 { name="nse"; version="1.21"; sha256="0mw2ijc6z0l8sa7z5fbcapp1rl87zhh5v32iw1mcjw4khwc93bk7"; depends=[coda mcmc mcmcse np Rcpp sandwich]; }; + nse2r = derive2 { name="nse2r"; version="0.1.6"; sha256="0b7ll490xf8r4787qkaz01z3djc7dzgzqg3w4nmmrnrfv36mkybf"; depends=[jsonlite magrittr yahoofinancer]; }; + nseval = derive2 { name="nseval"; version="0.4.3"; sha256="07pabn4msb6q50x67z84flb8fpzf43s1dy61cnqd7rn4l7zgc181"; depends=[]; }; nsga2R = derive2 { name="nsga2R"; version="1.1"; sha256="1b3kkd1mi6g13bl2mkzqyvz0ki296fa9pv055r8mpkdm6gk12lb4"; depends=[mco]; }; nsga3 = derive2 { name="nsga3"; version="0.0.3"; sha256="1jv3kw22jw24n7lnwhq3857mygr2yfv8c5xp3lbqqgz5840cdfa1"; depends=[mlr parallelMap rPref xgboost]; }; nsm3data = derive2 { name="nsm3data"; version="0.1"; sha256="15m3x7jmwmh3rs65v5j39672253crc379zq3k6xigi6p7qnba7sn"; depends=[]; }; @@ -13289,9 +13370,9 @@ in with self; { numGen = derive2 { name="numGen"; version="0.1.1"; sha256="1y41wq31r8126dz1sj23smq2k6v9yqczq4ddgzqb73dsrx9dmmc0"; depends=[]; }; numKM = derive2 { name="numKM"; version="0.2.0"; sha256="0g5jw12fmfc6nl6a3ghpslkjd2d7pbihl70sks35r7dalmr6ihzk"; depends=[survival]; }; numOSL = derive2 { name="numOSL"; version="2.6"; sha256="03h1p56650x4my5vq5jlmjsz5xj0w2j75qfr08rh7nr38dwgp1k8"; depends=[]; }; - numbat = derive2 { name="numbat"; version="1.0.2"; sha256="0qh37mw8kpajxxvnljla4bc590nd0br17zs9x3k8jhzsc25mffdc"; depends=[ape argparse caTools data_table dendextend dplyr GenomicRanges ggplot2 ggraph ggtree glue igraph IRanges logger magrittr Matrix parallelDist patchwork pryr purrr R_utils Rcpp RcppArmadillo RcppParallel reshape2 RhpcBLASctl roptim scales stringr tibble tidygraph tidyr tidyverse vcfR zoo]; }; + numbat = derive2 { name="numbat"; version="1.1.0"; sha256="0b7wdrkgswjp5pc9f3h86d0v0xmpifbv4q0zda46r7ijwxys1p9w"; depends=[ape caTools data_table dendextend dplyr GenomicRanges ggplot2 ggraph ggtree glue igraph IRanges logger magrittr Matrix optparse parallelDist patchwork pryr purrr R_utils Rcpp RcppArmadillo RhpcBLASctl roptim scales scistreer stringr tibble tidygraph tidyr tidyverse vcfR zoo]; }; numberofalleles = derive2 { name="numberofalleles"; version="1.0.1"; sha256="0rjl21844yqp2503gy71c6vg8xywc4lcx7qr9vwvkjw5wiwxls11"; depends=[partitions pedtools Rcpp ribd]; }; - numbers = derive2 { name="numbers"; version="0.8-2"; sha256="0gapcnk6zw9n77yddwsj0v6lzxm7ly2myjjj8kw5wjyng0l27b61"; depends=[]; }; + numbers = derive2 { name="numbers"; version="0.8-5"; sha256="02r2mlq3jygvwi7anbrrid6693qc7iklxhc9ksmqjdlmgzdxxmbp"; depends=[]; }; numbersBR = derive2 { name="numbersBR"; version="0.0.2"; sha256="0ihxlny745gpz1ngq862rydn1zwn8zni1xw9mmgw8hkylsrnjfq8"; depends=[stringr]; }; numform = derive2 { name="numform"; version="0.7.0"; sha256="0n96jm141h4awazr8sads9d99faw8kdy3vbhmjr58d8iqf7793f8"; depends=[glue]; }; nutriNetwork = derive2 { name="nutriNetwork"; version="0.1.1"; sha256="0ya95h88jkiwc7cg7ic8bmyd7b0lgnhxrywwqvi2j6m6nbvvaxzy"; depends=[glasso huge igraph Matrix tmvtnorm]; }; @@ -13299,7 +13380,7 @@ in with self; { nvmix = derive2 { name="nvmix"; version="0.1-0"; sha256="12lhch9sib2nx8j7500dchfi27fvpabbcdkcw9qh194fx22ycknx"; depends=[ADGofTest copula Matrix mnormt pcaPP pracma qrng]; }; nycflights13 = derive2 { name="nycflights13"; version="1.0.2"; sha256="07aa76c77pm1wpzkwjmzv8n6ir5i6fxawx8wx586gwc5wajcb1qf"; depends=[tibble]; }; nzelect = derive2 { name="nzelect"; version="0.4.0"; sha256="19kcbq454yg9g76ix7v3nibgw2203d7vv6f2d6d2zkcc0h08bjm7"; depends=[]; }; - nzffdr = derive2 { name="nzffdr"; version="2.0.0"; sha256="1g32bra2z6a20jjqm6d7irccmr0x36h576bws6kh5x3h25i3plfv"; depends=[curl httr stringi xml2]; }; + nzffdr = derive2 { name="nzffdr"; version="2.1.0"; sha256="14s2dfrrknaswg4l69lncsdbd7algpd9pzgrhpip0vbmyq9pa2ni"; depends=[curl httr rlang stringi tidyr xml2]; }; nzilbb_labbcat = derive2 { name="nzilbb.labbcat"; version="1.1-1"; sha256="1kzsmsliwv8776cyb3wmvzyrr6mqgrsxswxyj1fsxr4yxwlkyr98"; depends=[httr jsonlite rstudioapi stringr]; }; nzpullover = derive2 { name="nzpullover"; version="0.3.0"; sha256="0b3mz5i58m48fa1x7gv4l3gqj0gvrar201ph2l1gkbcnfmazwjp8"; depends=[]; }; o2geosocial = derive2 { name="o2geosocial"; version="1.1.0"; sha256="158nbc45h4k677lgx9n976d9kz7hy8fb7z5s2v6pmkmh521jdn2a"; depends=[data_table geosphere ggplot2 outbreaker2 Rcpp visNetwork]; }; @@ -13307,7 +13388,7 @@ in with self; { oRus = derive2 { name="oRus"; version="1.0.0"; sha256="0q6hgiidcpm95pyisndihxjg78v6k1zycdqd72309aankdk0g5h4"; depends=[dplyr knitr rmarkdown stringr tibble tidytext tm topicmodels xlsx]; }; oaColors = derive2 { name="oaColors"; version="0.0.4"; sha256="040sdqrk9dciylnnrrshlj06s9qhvngii9shx1p8412ip7mk8r1m"; depends=[MASS RColorBrewer]; }; oaPlots = derive2 { name="oaPlots"; version="0.0.25"; sha256="0c5ig1ar02vg38pjjmp3gd53ij1j7pzajs0zrlfajz141qkv2ysr"; depends=[ggplot2 oaColors]; }; - oai = derive2 { name="oai"; version="0.3.2"; sha256="1zcbcxhw692s0y6izvwazyzhgx0iwsxsbcan2nk0mb7n11p7bypb"; depends=[httr plyr stringr tibble xml2]; }; + oai = derive2 { name="oai"; version="0.4.0"; sha256="0czf8f2qcjl9lh48svicpis09d3iwz9cndfm7hq8wlz5dl3dwh7m"; depends=[httr plyr stringr tibble xml2]; }; oaqc = derive2 { name="oaqc"; version="1.0"; sha256="1rc0l79xygmr2rp5sjadzigbj65a13z5xlvrxzy26cl0wsxwhmjf"; depends=[]; }; oaxaca = derive2 { name="oaxaca"; version="0.1.5"; sha256="1z3sbkgzaqq6n1bz0f17gqrbfjbm8bp20384ryx3jq2v50b6gbry"; depends=[Formula ggplot2 reshape2]; }; obAnalytics = derive2 { name="obAnalytics"; version="0.1.1"; sha256="1l4ld120qk0adycmvqrkzada10kb7z03lj2njzqagmacl1z8598f"; depends=[ggplot2 reshape2 zoo]; }; @@ -13321,7 +13402,7 @@ in with self; { observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; }; occCite = derive2 { name="occCite"; version="0.5.6"; sha256="08bc0pi2i2fmc9fcmir150b7g8jnd58q3qaakw2gk25yjy14rp7j"; depends=[bib2df BIEN curl DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; }; - occTest = derive2 { name="occTest"; version="0.1"; sha256="1ligcwdwjq7hix7xn6k0ykvlnnsh3v7cx33xz52zrpbz2ljy29jr"; depends=[alphahull biogeo CoordinateCleaner countrycode data_table dataPreparation dplyr DT ggplot2 Matrix outliers pingr plyr raster rgbif rgdal rgeos rnaturalearth rnaturalearthdata sf sp spocc stringr svMisc tictoc tidyverse]; }; + occTest = derive2 { name="occTest"; version="0.1.1"; sha256="11dqkah6z50zbxiyniv4f2f0n742gmgzqdaarvc17vn750b6b595"; depends=[alphahull biogeo CoordinateCleaner countrycode data_table dataPreparation dplyr DT ggplot2 Matrix outliers pingr plyr raster rgbif rgdal rgeos rnaturalearth rnaturalearthdata sf sp spocc stringr svMisc tictoc tidyverse]; }; occupancy = derive2 { name="occupancy"; version="1.2"; sha256="0j50vg1405n1hp72xqsq1hp3gdbfx5yq9w1zdv6dzjc6vjhbx00d"; depends=[matrixStats]; }; ocd = derive2 { name="ocd"; version="1.1"; sha256="06pyc352pvn85k76z9797gwk0ksbb3snvh6krysp68k3lcygq872"; depends=[]; }; oce = derive2 { name="oce"; version="1.7-10"; sha256="1zv8jpnmfwq59plsqzjjj0hi0bbg5zfm5w7hcl7m5xkkmsvyx6dq"; depends=[gsw Rcpp]; }; @@ -13346,10 +13427,10 @@ in with self; { oddstream = derive2 { name="oddstream"; version="0.5.0"; sha256="1nwjw7fq6b4jdq4m2w0a7xgmzjg5a6pbma1d3r9msiz8rnhb0c54"; depends=[dplyr ggplot2 kernlab ks magrittr MASS mgcv moments mvtsplot pcaPP RColorBrewer RcppRoll reshape tibble tidyr]; }; odeGUTS = derive2 { name="odeGUTS"; version="1.0.1"; sha256="1c3w934dwh5jsh5z169isv9kqh8xbfgp4rk7k1sp8mj0kvy8nqc4"; depends=[deSolve dplyr magrittr tidyr zoo]; }; odeintr = derive2 { name="odeintr"; version="1.7.1"; sha256="0wfb5lgv10p0qyfbn9hdg14bda37v43lpgbwv6nbw63zzbsbazqi"; depends=[BH Rcpp]; }; - odetector = derive2 { name="odetector"; version="1.0.0"; sha256="041diyzap14gfj73pi4qrfnmikm8xchyii9vrz8y411dgi17aiqg"; depends=[ppclust]; }; + odetector = derive2 { name="odetector"; version="1.0.1"; sha256="094i6ykv3s0c5yhdnlgpkz1wb6pr9k6r3vsh7zgkxyy5iayi6dlv"; depends=[ppclust]; }; odin = derive2 { name="odin"; version="1.2.4"; sha256="0m8afhbpjdcdscgw7ngsdr7n8qpxicn3pqjrsjbwi4hrk5aii7ry"; depends=[cinterpolate deSolve digest glue jsonlite R6 ring withr]; }; odk = derive2 { name="odk"; version="1.5"; sha256="0fcnr4c1clwx1sk6fgg4cx506gdi90n2h05g0i47p4s5bra0qwwl"; depends=[gsheet openxlsx]; }; - odns = derive2 { name="odns"; version="1.0.1"; sha256="00ihccylkn7q70f5c4qw19i82a80c5akwr7wh6whmqcmgj6bdq4i"; depends=[data_table glue httr jsonlite]; }; + odns = derive2 { name="odns"; version="1.0.2"; sha256="0a2ifmyrsfih5a7jwc0b6l9wl7c1s5x08fq5bfm27xm9jnb8fwsn"; depends=[data_table glue httr jsonlite]; }; odpc = derive2 { name="odpc"; version="2.0.5"; sha256="0cbkq8parb8br1j386xk5mgwz8gkmwvp79f9sjvzhs7z6wlbp0pv"; depends=[doParallel foreach forecast MASS Rcpp RcppArmadillo]; }; odr = derive2 { name="odr"; version="1.3.1"; sha256="185i81ixrm1mby5ryaymi4ixwxnx84g8f1zv6qbb1aj0wf1rxsng"; depends=[]; }; oem = derive2 { name="oem"; version="2.0.11"; sha256="0p9s68zgma9mcjnz0xg6h07yp38rqj209asg18hji8528iazbv8g"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; @@ -13385,14 +13466,16 @@ in with self; { onc_api = derive2 { name="onc.api"; version="2.0.1.0"; sha256="10scbhg6aniqzrbkblhfhz9ni710xzppbzfrr4wrhsy1z5y2nfwc"; depends=[anytime crayon httr humanize lubridate stringi testthat tictoc]; }; once = derive2 { name="once"; version="0.4.1"; sha256="0yshpww3rq68m0qx7kid3zlcxi1nf81vmziclyvpg61aikj8fhx5"; depends=[magrittr]; }; oncoPredict = derive2 { name="oncoPredict"; version="0.2"; sha256="1slq5vp78n5hcq24vlg35r6xansdgriyjw8y9iyb0lj3cdaq38c3"; depends=[BiocGenerics car gdata genefilter GenomicFeatures GenomicRanges glmnet IRanges maftools org_Hs_eg_db pls preprocessCore readxl ridge S4Vectors sva tidyverse TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + oncomsm = derive2 { name="oncomsm"; version="0.1.2"; sha256="13h5ydw11kdjcdr48hqa4dv81qixj4l5qxrzwv4x3lqdnsvvnll1"; depends=[BH checkmate dplyr furrr ggplot2 magrittr purrr Rcpp RcppEigen RcppNumerical rlang rstan StanHeaders stringr tibble tidyr]; }; oncrawlR = derive2 { name="oncrawlR"; version="0.2.0"; sha256="0cm26diaf3jlzfrpgh13q0hakakmj6vy41wk9z0w81az4jcg9sn9"; depends=[caret DALEX dplyr e1071 formattable fs ggplot2 htmltools jsonlite pdp pROC RCurl readr rjson rlang rlist scales sparkline tidyr webshot xgboost]; }; ondisc = derive2 { name="ondisc"; version="1.0.0"; sha256="071jrldclkaz5lfp3k5fh1ilpgvvcnakh2vvnr69n3pri9dl3fls"; depends=[crayon data_table dplyr magrittr Matrix Rcpp readr rhdf5 Rhdf5lib]; }; oneclust = derive2 { name="oneclust"; version="0.2.2"; sha256="0qbwnfv5lk93nfwwzfjwla6lv6imfcvcvmlb9h7ij32zpqg1fzwk"; depends=[magrittr Rcpp]; }; onehot = derive2 { name="onehot"; version="0.1.1"; sha256="1cdsz007wr054k5phvihhg4qx0fc039k2s6484m92kws8mb2ziix"; depends=[]; }; onelogin = derive2 { name="onelogin"; version="0.2.0"; sha256="06p3a8kaxmvsj8nn7dy8w6wv1jjw67is991hqg9q0fa20ifym3dl"; depends=[glue jsonlite magrittr R6 safer tibble]; }; - onemap = derive2 { name="onemap"; version="2.8.2"; sha256="14p3p3bvcgl63fk8sivwgqdcm7cydyh106rz26zk30gcjgvn91rm"; depends=[dendextend dplyr ggplot2 ggpubr htmlwidgets plotly princurve RColorBrewer Rcpp rebus reshape2 smacof stringi tidyr vcfR]; }; - onemapsgapi = derive2 { name="onemapsgapi"; version="1.0.0"; sha256="11w3xkjxhjf0b78hfjxjk650giswaf1js471backz4pcb97gaigl"; depends=[dplyr furrr future httr purrr rlang stringr tidyr]; }; + onemap = derive2 { name="onemap"; version="3.0.0"; sha256="0h5bi4zyiglic60msrkfny28k1rb7avqbs87ipzwwayb452b970c"; depends=[dendextend dplyr ggplot2 ggpubr htmlwidgets plotly princurve RColorBrewer Rcpp rebus reshape2 smacof tidyr vcfR]; }; + onemapsgapi = derive2 { name="onemapsgapi"; version="1.1.0"; sha256="0q1i17dkgcxqswa9wckxzsf1wr118zsw7yhbrbkbikvm27hqrrva"; depends=[dplyr furrr future httr purrr rlang stringr tidyr]; }; onepass = derive2 { name="onepass"; version="0.1.2"; sha256="1r8wk00aqc0sc7l6mmy1k4hkijfikynysrx5vvahbd6mlcdb3bmp"; depends=[jsonlite]; }; + onetime = derive2 { name="onetime"; version="0.1.0"; sha256="17snjkldm11ry5f1mp18jkmlw7hk0zw5yl1qrmakh1lx7fq1326v"; depends=[filelock rappdirs]; }; onewaytests = derive2 { name="onewaytests"; version="2.6"; sha256="05q2ir65x9pvsiim4l029hjhm12niiqjgk5rsx47i6vx23ffg8ir"; depends=[car ggplot2 moments nortest]; }; onion = derive2 { name="onion"; version="1.5-0"; sha256="07q5wwphb6jsk7ya7hgsf5782yalvhyc7h43hsd9rg4rhpmy8in9"; depends=[emulator]; }; onlineBcp = derive2 { name="onlineBcp"; version="0.1.8"; sha256="1pwpnmpgh3hl8mv1pbn577dn832nxbsfaxn3hqghvs4dn06lwngf"; depends=[VIM]; }; @@ -13400,9 +13483,10 @@ in with self; { onlinePCA = derive2 { name="onlinePCA"; version="1.3.1"; sha256="08qivsfnwz5vp089lv9czsaz3nfi42kn9yhgzf27dji18y2xscic"; depends=[Rcpp RcppArmadillo RSpectra]; }; onlineforecast = derive2 { name="onlineforecast"; version="1.0.1"; sha256="0cpwb6bx1qcf05rbi5ycdpgmfb0c5lvhki1c77kzhds5bn3gw5k4"; depends=[digest pbs R6 Rcpp RcppArmadillo]; }; onlineretail = derive2 { name="onlineretail"; version="0.1.2"; sha256="0lid3g4v51c664304cxgjm209qxv88hqglv89frmj4afc0y6k7sc"; depends=[]; }; + onls = derive2 { name="onls"; version="0.1-2"; sha256="19pgrhr7xzas4s592l4sgv1dfynf3s3d227zwcdv6z6wrxh40hyj"; depends=[minpack_lm]; }; onmaRg = derive2 { name="onmaRg"; version="0.1.2"; sha256="1gvxnw53r5yan5dsp379psz3mnxpnc0wqmwmb2s5qf8ldq688zi1"; depends=[dplyr httr readxl sf stringr]; }; onnx = derive2 { name="onnx"; version="0.0.3"; sha256="1s0swrcff9v9ffbjkraahmb398gh2jrca2wf5k6gs8037frnl8wd"; depends=[reticulate]; }; - onpoint = derive2 { name="onpoint"; version="1.0.2"; sha256="0l1dblj6cr2qagxmgx5ma455qazg1br5y0zpl2dv7jcdb24f7pnq"; depends=[ggplot2 spatstat_core spatstat_geom spatstat_random]; }; + onpoint = derive2 { name="onpoint"; version="1.0.3"; sha256="0g0i88s4hwgjnwqljjgbibc6bks0hy0f27v94w0br45yklrdh73f"; depends=[ggplot2 spatstat_explore spatstat_geom spatstat_random]; }; onsr = derive2 { name="onsr"; version="1.0.1"; sha256="0qazwqdbbinsrimn7rf7xcjz5l5zp372i5j54rp87xy098q7c0l3"; depends=[httr jsonlite readr tibble]; }; ontoFAST = derive2 { name="ontoFAST"; version="1.0.0"; sha256="0l3d8bp86849rp0qrs1dfv7bjmrfdqvahb1x656vk69fi20722ma"; depends=[dplyr ontologyIndex pbapply plyr shiny shinydashboard stringr sunburstR usethis visNetwork]; }; ontologics = derive2 { name="ontologics"; version="0.5.2"; sha256="074pqjfm24gd332xja6mgdy8grbbwa6r3yhclcpm1d7hx8dhy2g9"; depends=[checkmate dplyr httr magrittr purrr rdflib readr rlang stringr tibble tidyr tidyselect]; }; @@ -13411,11 +13495,11 @@ in with self; { ontologySimilarity = derive2 { name="ontologySimilarity"; version="2.5"; sha256="035z572lbsfcnr9c0hl8gir1kgk0dw8dxzr3v8dqd93k6jr6kaxb"; depends=[ontologyIndex Rcpp]; }; oolong = derive2 { name="oolong"; version="0.4.1"; sha256="16f5r2z9p87k3pi643s63nxxnh7gn4x70m5jpk48hwb2s1rdar9h"; depends=[cli cowplot digest ggplot2 irr keyATM purrr quanteda R6 shiny tibble]; }; oompaBase = derive2 { name="oompaBase"; version="3.2.9"; sha256="1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl"; depends=[cluster]; }; - oompaData = derive2 { name="oompaData"; version="3.1.2"; sha256="11c5h55xjvbavyqy9z2ch03ngy739zs61r8r4lc2gijscc7wn1s4"; depends=[]; }; + oompaData = derive2 { name="oompaData"; version="3.1.3"; sha256="0gdp7bghgpz3q0h06w8r926x7wkpcvkpyf0v5qfi1qixbpvk5fdf"; depends=[]; }; ooplah = derive2 { name="ooplah"; version="0.2.0"; sha256="1p74jh9g62yicrw0lhpbn0diqi2myl24z28kpd2b3mglyffadr0b"; depends=[R6]; }; oops = derive2 { name="oops"; version="0.2.0"; sha256="0xg69riqphvsqqa953v4mlcakvl0invf29678nrljibg31n4wak5"; depends=[]; }; oottest = derive2 { name="oottest"; version="0.9.1"; sha256="1y0k0jcncjkcgfxybs2yyfcc7ywa49jnalrw8mn7m04h58gqg77x"; depends=[]; }; - opGMMassessment = derive2 { name="opGMMassessment"; version="0.3.2"; sha256="0b57hkd7h0l5xdcg196dc2la67aslrrg30qzhaj33nirgy8cig81"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; + opGMMassessment = derive2 { name="opGMMassessment"; version="0.3.3"; sha256="1d9ll5shhbk93hjvxc3nhaffjg31l14w9nqcbwqjv43gjaz0yq3a"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; opa = derive2 { name="opa"; version="0.5.3"; sha256="14y3q7mblxc65lpsndsij1wgwd29wfzfc58g666dgs5fz7vdqf72"; depends=[cpp11 Rcpp]; }; opalr = derive2 { name="opalr"; version="3.2.0"; sha256="1k4qm25gs4gkk9ixxz89dqnz6wkidly13iv9r437fdwsm6m9bzyr"; depends=[httr jsonlite labelled mime progress]; }; opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.8.2"; sha256="0laf24x2h6xwhd5wwcwi1iqg5gni29bmlfr86yrvpdrdgr7f4cha"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; @@ -13428,9 +13512,9 @@ in with self; { openSkies = derive2 { name="openSkies"; version="1.1.6"; sha256="03nlbmxp36z82myrbamwl1zngsnfxfw80niisapv53n605p4lrg1"; depends=[cluster dbscan ggmap ggplot2 httr magick R6 ssh xml2]; }; openVA = derive2 { name="openVA"; version="1.1.0"; sha256="0j4lz66wcx20n0sdjrp06a6zwcz8jvcihmdaj1jr1rnrb5sags0z"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; - openai = derive2 { name="openai"; version="0.1.0"; sha256="19h6sbsgqa81dq23whxxymp97f83x2bfyl2a5brim6l809xv5w1v"; depends=[assertthat glue httr jsonlite lifecycle magrittr]; }; - openair = derive2 { name="openair"; version="2.11"; sha256="0yak0n9ay7ikbmm8fchb2zpzk1sq9hnrrhjhcd5ak839k91lhj7c"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr tidyr]; }; - openairmaps = derive2 { name="openairmaps"; version="0.5.1"; sha256="0b6ibb4846wnmv6pwl83j7544iyma2b0mxjkx6jic0g82m9r7f7a"; depends=[cli dplyr forcats leaflet lubridate magrittr openair purrr rlang stringr tibble tidyr]; }; + openai = derive2 { name="openai"; version="0.3.0"; sha256="18kr3g6896phmyjywx70nj8yy391w6bl83in9wz4fjrnn7b8j88l"; depends=[assertthat glue httr jsonlite lifecycle magrittr]; }; + openair = derive2 { name="openair"; version="2.12"; sha256="1mgawgf6y8bfb606y8ka7g920sqn3c322l1xkis25zgq2r1gk6js"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tidyr]; }; + openairmaps = derive2 { name="openairmaps"; version="0.6.0"; sha256="15w5pwgdkmnyasrv3dwanaf9jz6iplq18zx53iz60nnn9bndy29n"; depends=[cli dplyr forcats leaflet lubridate magrittr openair purrr rlang stringr tibble tidyr tidyselect]; }; openalexR = derive2 { name="openalexR"; version="1.0.0"; sha256="0xyzlg3cyhbndnhc864g8447nffc2gg5si7s4h5l1jygyz3c8bki"; depends=[curl httr jsonlite progress tibble]; }; openbankeR = derive2 { name="openbankeR"; version="0.1.1"; sha256="04jh3nnp53dzbk96dcz0xi67jqmp66mzbj81cy8mhhd2rl5ry9cj"; depends=[dplyr glue httpcode httr jsonlite magrittr tidyr]; }; openblender = derive2 { name="openblender"; version="0.5.81"; sha256="01akixxj04kgrxhv04icrivfpnipnpg9j62i3y19q3jkl9846lh1"; depends=[httr jsonlite]; }; @@ -13439,14 +13523,14 @@ in with self; { opencv = derive2 { name="opencv"; version="0.2.3"; sha256="1kpkw3wkvfs2g9pdkk0s9q7a3pq3vq7n9hw55bz0v9c2mmdcz92b"; depends=[magrittr Rcpp]; }; opendatatoronto = derive2 { name="opendatatoronto"; version="0.1.5"; sha256="1fiviazs0ydxvmsqaayhwnxf4wl4sx1psn8i5mpis7218d9ihagy"; depends=[ckanr curl magrittr readxl sf tibble xml2]; }; opendotaR = derive2 { name="opendotaR"; version="0.1.4"; sha256="17cygsw3nkg6zincfrcdh1509rlz3n5zrv9wvv7mjngm61sn79nf"; depends=[dplyr jsonlite lubridate]; }; - openeo = derive2 { name="openeo"; version="1.2.2"; sha256="10lmkga3pm6h0sv0jccazi3xkda3fzqfk5nv5xf8hkm3g3kccs40"; depends=[base64enc htmltools httr2 IRdisplay jsonlite lubridate R6 rlang sf]; }; + openeo = derive2 { name="openeo"; version="1.3.0"; sha256="002zrvrm417ix80vrqnl2wygqh0vjymfi5hl88v6ajfspp9r73qn"; depends=[base64enc htmltools httr2 IRdisplay jsonlite lubridate R6 rlang sf]; }; openintro = derive2 { name="openintro"; version="2.4.0"; sha256="1svvlhdnv8dvqwphsn83asfd5xzvvar2bz334aqndqx76dv9j88j"; depends=[airports cherryblossom ggplot2 readr rmarkdown tibble usdata]; }; openmetrics = derive2 { name="openmetrics"; version="0.3.0"; sha256="0bcljsirlkxn0h87j2g2jb6spcik84h7nms06mcj40ckx188yr82"; depends=[R6]; }; - openssl = derive2 { name="openssl"; version="2.0.4"; sha256="1v2w19sffwqkgi9nj593ga46l9qp716lyb3gnjihq3624x8wd9d1"; depends=[askpass]; }; + openssl = derive2 { name="openssl"; version="2.0.5"; sha256="1lw60yq20r42l7y1wbp79s3mk3dwg62v0dh7jx1cdd7rb46i9hla"; depends=[askpass]; }; opentimsr = derive2 { name="opentimsr"; version="1.0.13"; sha256="0m4xp70cq4h76r4qk7krn5p9w3xv44z5lrkpys7kbvxr38g5y0il"; depends=[DBI Rcpp RSQLite]; }; opentripplanner = derive2 { name="opentripplanner"; version="0.4.0"; sha256="1q0szrbgcjzc7ny08gilv2q0v1x81i626mzsahkii79qqb7capr1"; depends=[checkmate curl data_table geodist googlePolylines lubridate pbapply rjson sf sfheaders]; }; openxlsx = derive2 { name="openxlsx"; version="4.2.5.1"; sha256="1j2516plvlrp7l0mw7xqjhjjcidfdnfsybdhi2bx3n0910w29lk4"; depends=[Rcpp stringi zip]; }; - openxlsx2 = derive2 { name="openxlsx2"; version="0.3"; sha256="1hxz98nn09y86whx2z0dr0hxgg7cz8h10jz75ri4xpgcmlfxhhw6"; depends=[magrittr R6 Rcpp stringi zip]; }; + openxlsx2 = derive2 { name="openxlsx2"; version="0.4"; sha256="0rfp82abrhfc094xxa634r850gw8nx79ariw6kib6z1dh9bli17p"; depends=[magrittr R6 Rcpp stringi zip]; }; opera = derive2 { name="opera"; version="1.2.0"; sha256="09gh0c74y3n25f9p1rya8ybql5mfaqkcnr8i8wwwzfm67vqdfrnh"; depends=[alabama htmltools htmlwidgets pipeR rAmCharts Rcpp RcppEigen Rdpack]; }; operator_tools = derive2 { name="operator.tools"; version="1.6.3"; sha256="1v4dg7xhz24dnp0zxn815x1405ig64ibii6y40la1gvmzcc41dz5"; depends=[]; }; operators = derive2 { name="operators"; version="0.1-8"; sha256="0zgcv2q46qyqv4dhbd33s4044zjw38w8dqfpzs0c1lxjpkil3dnx"; depends=[]; }; @@ -13456,7 +13540,7 @@ in with self; { optR = derive2 { name="optR"; version="1.2.5"; sha256="0q7jf4m0gzm11izl5lff17pvr855smqmc6zzi1bc7m6h3z865l32"; depends=[]; }; optbdmaeAT = derive2 { name="optbdmaeAT"; version="1.0.1"; sha256="1y1mvcyjihpj1wgjmifhmd10717wr1srp7h87azs4gfypgsiqchn"; depends=[igraph MASS Matrix]; }; optbin = derive2 { name="optbin"; version="1.2"; sha256="08v8dn3jn75p1f04lc963gasyszjf57j7kajwpqv4w20lwjsw17w"; depends=[]; }; - optedr = derive2 { name="optedr"; version="1.0.1"; sha256="0ywq5s3y30r0il2vsd99qgd8m7c1xsk59fgzz8zs5ips3xsjmnwg"; depends=[cli crayon dplyr DT ggplot2 hrbrthemes magrittr nleqslv orthopolynom plotly purrr rlang shiny shinyalert shinydashboard shinyjs]; }; + optedr = derive2 { name="optedr"; version="2.0.0"; sha256="17r0axfh7yjv5xj9060vi5vysnmi38pz5dsvm0fazfcpzzlxnld7"; depends=[cli crayon dplyr ggplot2 nleqslv purrr rlang shiny]; }; optextras = derive2 { name="optextras"; version="2019-12.4"; sha256="1sqkid6h13h8i8wzri26s828ycwlxlwpwxd85r8bw9h8hs1n602r"; depends=[numDeriv]; }; optiSel = derive2 { name="optiSel"; version="2.0.5"; sha256="13rxv6wqz5gpmsfb96173p1y8140zqj4llihxsvjczcqwhrayjha"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; }; optiSolve = derive2 { name="optiSolve"; version="1.0"; sha256="0mhl5gdz3y3cs3p6v7z4n50na3sqj0w739gixcf4qgb1ppx0h1xa"; depends=[alabama cccp MASS Matrix nloptr plyr Rcpp shapes stringr]; }; @@ -13466,15 +13550,15 @@ in with self; { optigrab = derive2 { name="optigrab"; version="0.9.2.1"; sha256="1c3q4kx8rkgpjsy0hy2w2dd9kv51avnw1ab82hzmjgngfnvaig0n"; depends=[magrittr stringi]; }; optim_functions = derive2 { name="optim.functions"; version="0.1"; sha256="1la3v8yd9cdichp3mka4x86hr9lynh6qfg7h9ab6cwijw6kzkn6g"; depends=[lhs randtoolbox stringr]; }; optimCheck = derive2 { name="optimCheck"; version="1.0"; sha256="1qjkv1mfyn7sw0dkxxcdaqj85vl71cgffpf3k3mvzy0s8yhxjb4n"; depends=[]; }; - optimLanduse = derive2 { name="optimLanduse"; version="1.1.0"; sha256="0n30si6znvcyncvzbcm2149dvpqdmawamb5raz2fg19jjkj5qpfl"; depends=[dplyr lpSolveAPI tidyr]; }; + optimLanduse = derive2 { name="optimLanduse"; version="1.1.2"; sha256="0vrn794y6fp02ara6xa1vlfx7vim0gbx5bc1pkns2fh76gqpsa4n"; depends=[dplyr lpSolveAPI tidyr]; }; optimParallel = derive2 { name="optimParallel"; version="1.0-2"; sha256="178ayfaivkbxkghxbg97lx4gl27kxkmgaaw9y8q5206r4cncd6qg"; depends=[]; }; optimStrat = derive2 { name="optimStrat"; version="2.3"; sha256="1jkwhgpw7nknd7h8c01z25x566bw2qb388i6g5nwcygxsshdgpri"; depends=[cubature mvtnorm shiny]; }; optimalThreshold = derive2 { name="optimalThreshold"; version="1.0"; sha256="1m39q36p7i7z31b90awriq5jf9rfybyw5lj3m1w33v2ssipkzp1n"; depends=[ars coda HDInterval mgcv rjags]; }; - optimall = derive2 { name="optimall"; version="0.1.1"; sha256="15cq4b50j39ahpx84g0wrg7gs9n36rx4ij2srm14zcjsmvnxbv9p"; depends=[dplyr glue magrittr rlang tibble]; }; + optimall = derive2 { name="optimall"; version="0.1.2"; sha256="1lq1pd8ns6ivffp5kh3w1vczdwp41mgsywlaykyc7vb6j55qycy4"; depends=[dplyr glue magrittr rlang tibble]; }; optimbase = derive2 { name="optimbase"; version="1.0-10"; sha256="0hdzbqr03jwy1vz3q9iw0kvii5p9g1vm4c3hs3jxszcj1rgrfm12"; depends=[Matrix]; }; optimg = derive2 { name="optimg"; version="0.1.2"; sha256="0fc7d3g5nxjjcbwh6v5m0ryhanw80v250j8m7j2gv4c9ql4g650d"; depends=[ucminf]; }; optimization = derive2 { name="optimization"; version="1.0-9"; sha256="1pg9a78hhm0h4pfagj13r1dmynv714knhw2dxhzhcvlgk9inpam8"; depends=[colorspace Rcpp]; }; - optimizeR = derive2 { name="optimizeR"; version="0.1.1"; sha256="1laxj4x77ws3q1bvdb5vqx2i3fspqws65x5jfsfj73j4qlc04z56"; depends=[lifecycle]; }; + optimizeR = derive2 { name="optimizeR"; version="0.2.0"; sha256="10pnf20p544ppa6q5arzay73pakin8yc04ywh5k49v5px2j0l8zc"; depends=[]; }; optimos_prime = derive2 { name="optimos.prime"; version="0.1.2"; sha256="1a76gfzpd2s4gq15cd3frndak7wc6q3xqh9sllkk665031fx6z1h"; depends=[ggplot2 plotly tidyverse]; }; optimr = derive2 { name="optimr"; version="2019-12.16"; sha256="003wz9r3xdi47ad22l4dkhp0dalknb2s9fp82yamjx7x1xbfvcbk"; depends=[numDeriv optextras Rcgmin Rvmmin setRNG]; }; optimsimplex = derive2 { name="optimsimplex"; version="1.0-8"; sha256="1q5hfbiq265q5im6wg78spaqsfj421hpzh8bz51zmi188h6xwnwr"; depends=[optimbase]; }; @@ -13489,6 +13573,7 @@ in with self; { optparse = derive2 { name="optparse"; version="1.7.3"; sha256="1v87db7fm494dwxvdsnl1m2kj84nplq7pkh0g41najhx0npy31v2"; depends=[getopt]; }; optpart = derive2 { name="optpart"; version="3.0-3"; sha256="18h659gbgzflq81lcchc058xjgljkmhpsjkh51ylygwrv1qjrz2i"; depends=[cluster labdsv MASS plotrix]; }; optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; }; + optrefine = derive2 { name="optrefine"; version="1.0.0"; sha256="0s5gwshphjwl02vw22h9dckqix7yw0zzyvasfy594c7d1qw46y4p"; depends=[ggplot2 MASS Rglpk sampling]; }; optweight = derive2 { name="optweight"; version="0.2.5"; sha256="1mfk9sp47flqq7i762wip5191j8m0q9kbyxs4a7f0pd76qwf67q2"; depends=[ggplot2 Matrix osqp]; }; opusminer = derive2 { name="opusminer"; version="0.1-1"; sha256="1vw6pbk1iiaxmfws95wmwf56p3afk10s5c3x9f0lliamckpyzkck"; depends=[arules Matrix Rcpp]; }; ora = derive2 { name="ora"; version="2.0-1"; sha256="0albxqma220rnrpfdq3z9cawr83q1a0zzczbbcy4nijjm4mswphy"; depends=[DBI ROracle]; }; @@ -13504,10 +13589,10 @@ in with self; { orders = derive2 { name="orders"; version="0.1.6"; sha256="0b1ysq22qhdzs5fb63m786iil0rkb9qsj9p730izn7dg3zx36gl1"; depends=[actuar gamlss_dist Newdistns]; }; orderstats = derive2 { name="orderstats"; version="0.1.0"; sha256="0a3ga0cjryvbininspsx5wzc96s3fza06s3d5fhbllbixz0rap4a"; depends=[]; }; ordiBreadth = derive2 { name="ordiBreadth"; version="1.0"; sha256="04faqhas1p9lxhghd4xq07yq1nxv7ns18avhvkql7sy5a9g7bfs1"; depends=[vegan]; }; - ordinal = derive2 { name="ordinal"; version="2019.12-10"; sha256="09bpmjmbf4x82kgf6bm4bkncq2apdv9mk20zj4zgma2jx2vyfhbs"; depends=[MASS Matrix numDeriv ucminf]; }; + ordinal = derive2 { name="ordinal"; version="2022.11-16"; sha256="14yld28vjmvxbwz6mapfri4vrj3nsf9p73fn2z80j6jkz8fsv22l"; depends=[MASS Matrix nlme numDeriv ucminf]; }; ordinalClust = derive2 { name="ordinalClust"; version="1.3.5"; sha256="0hmqvhrmijgzanh08z5v82a07zl7xm69wl8zzj99fksahyrgxjdc"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; ordinalCont = derive2 { name="ordinalCont"; version="2.0.2"; sha256="1azwcr1si3b8dxf2y59d3rxw4msfq79khzg7zgqd0kbzyka4ygl8"; depends=[boot Deriv]; }; - ordinalForest = derive2 { name="ordinalForest"; version="2.4-2"; sha256="0s5isf8z6rrksl4jv1aizffxy3bcl726qjpj5j6z7642wkdkpygi"; depends=[combinat nnet Rcpp verification]; }; + ordinalForest = derive2 { name="ordinalForest"; version="2.4-3"; sha256="06blmwmn42dv6sri3j3473arrql5rihdlp7kgh56b2w1j2wdqq7s"; depends=[combinat nnet Rcpp verification]; }; ordinalLBM = derive2 { name="ordinalLBM"; version="1.0"; sha256="1sfzkm3f9s5nbalakgk5v919wr7hdlr5p280rw2p8dy4wxr3xk3s"; depends=[RColorBrewer reshape2]; }; ordinalNet = derive2 { name="ordinalNet"; version="2.12"; sha256="0ijgxp1lh4hbgks0p5041f5s6kpfrlm6f7hdz2nm3dn1rhq6bwvi"; depends=[]; }; ordinalRR = derive2 { name="ordinalRR"; version="1.1"; sha256="1sfkq8gryyls22208ympw5scgb4jkd27pyc1qklw4x7cz9wfnfbp"; depends=[rjags]; }; @@ -13515,17 +13600,17 @@ in with self; { ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.7"; sha256="0c1a4ziyh6jcqnblvc97gpv7bqyhd56gmxxyn1jascpvs2xxq2qy"; depends=[survival]; }; ordinalpattern = derive2 { name="ordinalpattern"; version="0.2.1"; sha256="1hlzi8rd24d9ab28dn70hf96d82r275l784ryk0c3hx574a1brlq"; depends=[gtools mvtnorm]; }; ordr = derive2 { name="ordr"; version="0.1.1"; sha256="07nsl6mdm4dmyl8vsqzcpd2mihcxsm68gjx3v1dfqgjqmz477nvf"; depends=[dplyr generics ggplot2 ggrepel labeling magrittr purrr rlang scales stringr tibble tidyr tidyselect]; }; - ore = derive2 { name="ore"; version="1.7.1.1"; sha256="0rs5r5h11x4l4nsbl4xqzbl4ahajd5374fq05abcmfjnjr9j64w5"; depends=[]; }; + ore = derive2 { name="ore"; version="1.7.2.1"; sha256="104506x9x14bs8lfhydwpgdh4qws2vqkvyy6xrlrviqlll6qbjgg"; depends=[]; }; oreo = derive2 { name="oreo"; version="1.0"; sha256="1qzv6fjana5fx45msqasqfniiancsch6j8r1llh1xyg2wjhqdj23"; depends=[fftwtools ggplot2 gridExtra openxlsx pracma scales spectral]; }; ores = derive2 { name="ores"; version="0.3.2"; sha256="0xzc0d38z7h5ghab3kqsv0r2cl3888j7vn94p51xlwcbhnq10kip"; depends=[httr]; }; orf = derive2 { name="orf"; version="0.1.4"; sha256="1njcnya5f2wx50l7gyf53js16xj1y6pwgbghxq4nm4grf2ck3mz1"; depends=[ggplot2 ranger Rcpp xtable]; }; - org = derive2 { name="org"; version="2022.7.21"; sha256="0gc01im9mpb7kj0dc4blgry868jrr1wy4v5wbfdsnbf5zy4xxivl"; depends=[]; }; + org = derive2 { name="org"; version="2022.11.23"; sha256="0ppiwdzy7x0fnqq5j23dim4g64cn3bq72v2vd91c2i3sg4n5ahlk"; depends=[]; }; orgR = derive2 { name="orgR"; version="0.9.0"; sha256="1q4qbwnbhmja8rqiph7g7m4wxhzhk9mh91x1jgbnky8bs4ljdgrx"; depends=[data_table ggplot2 ggthemes lubridate stringr]; }; organizr = derive2 { name="organizr"; version="0.1.0"; sha256="1i6j7c7d588gnjmh3ddknrs95mhw6ikq53c6wd3zy82lmjvh96bv"; depends=[fs here readr rlang rstudioapi stringr]; }; orgutils = derive2 { name="orgutils"; version="0.4-1"; sha256="1yc3avhq3786his7nd60zfbzd9inkfrfz938r8378z59zbb1mzqq"; depends=[textutils]; }; orientlib = derive2 { name="orientlib"; version="0.10.4"; sha256="0lds3y05byag466asi8hmv1yfllsdx7z5i8hq21r6dx3w4n4f46x"; depends=[]; }; origami = derive2 { name="origami"; version="1.0.7"; sha256="0b66alm1mr6vsgj5cgliqxw8vpm1x504qs42crlf0n6339a38h5l"; depends=[abind assertthat data_table future future_apply listenv]; }; - origin = derive2 { name="origin"; version="1.0.0"; sha256="0byzia26snxgwqzabbg634y1s2w7gbk065cbv6v9fxxkrjb5ifk3"; depends=[rstudioapi]; }; + origin = derive2 { name="origin"; version="1.1.0"; sha256="132ccdh40rz2rxabqjfjrmhpjrm5b5hm9zfqm3qwssgligf30vg3"; depends=[cli rstudioapi]; }; orloca = derive2 { name="orloca"; version="4.10"; sha256="113y76gyhslpfyq7n1nnbgnxhxgr213f28vnc3n3b9pghkkr0p4z"; depends=[knitr png rmarkdown ucminf]; }; orloca_es = derive2 { name="orloca.es"; version="4.9"; sha256="00zb08dqcsh1ljl4f2djm1pwbrfbaddgapn3v8nascmwxlhb2hkw"; depends=[orloca]; }; ormBigData = derive2 { name="ormBigData"; version="0.0.1"; sha256="1rq202k4assmij21bjjk1ba7121p5p3rp21k548cc6lk81xj1rcc"; depends=[benchmarkme doParallel foreach Hmisc iterators rms SparseM]; }; @@ -13547,8 +13632,7 @@ in with self; { oskeyring = derive2 { name="oskeyring"; version="0.1.5"; sha256="10ajmkw8sfcafs77flg0050s8vf88lq56rv2dxk9gv4pkvg8z498"; depends=[]; }; osmdata = derive2 { name="osmdata"; version="0.1.10"; sha256="0ysmjmab6yfqcwzbjjqlk0hbna0x8fg27p3svjs5y3qasyyx7wwq"; depends=[curl httr2 lubridate magrittr Rcpp reproj rvest sp tibble xml2]; }; osmextract = derive2 { name="osmextract"; version="0.4.1"; sha256="03bxdkykp081q3d9n14y0qp31vnllc4rzp2ldzs4s572xfcjd1hb"; depends=[httr jsonlite sf]; }; - osmplotr = derive2 { name="osmplotr"; version="0.3.3"; sha256="0p94phv7jn0q9k25300zz59ldfphm9xgy6i7n3r8xj4zay0c7mf2"; depends=[e1071 ggm ggplot2 mapproj osmdata rgeos sp spatstat spatstat_core spatstat_geom]; }; - osqp = derive2 { name="osqp"; version="0.6.0.6"; sha256="1q669vscwypz0vf6s38b5yzn178miql4xf5dg7b7y2fnjqdl6gw5"; depends=[Matrix R6 Rcpp]; }; + osqp = derive2 { name="osqp"; version="0.6.0.7"; sha256="00w2hr0pagnvpsk84z99c7alhv7xvs9wpcmkzbcg3qs14g888rgf"; depends=[Matrix R6 Rcpp]; }; osrm = derive2 { name="osrm"; version="4.0.0"; sha256="0lp5idik0lp2jn7mkgz512kpgp1zxxn4c7b1xb7aaia112p9fapp"; depends=[curl googlePolylines mapiso RcppSimdJson sf]; }; osrmr = derive2 { name="osrmr"; version="0.1.36"; sha256="1vnf6g1d9fjckz9ay910nb9gr1km2adwk3b0k460mxvpr36izkh7"; depends=[assertthat bitops R_utils rjson stringr]; }; ot = derive2 { name="ot"; version="0.2.0"; sha256="0lym92hsxhfjdkh738rxlpkq084454055vgxm2b4wdhqw00jwf5y"; depends=[]; }; @@ -13580,7 +13664,7 @@ in with self; { owdbr = derive2 { name="owdbr"; version="1.0.1.1"; sha256="0q4654zr5aw04sssy7127vafry72b7p3d8i44fqvqg3055awin0i"; depends=[data_table dplyr httr jsonlite magrittr tibble]; }; owidR = derive2 { name="owidR"; version="1.4.0"; sha256="1rp8rvqg292b88dxmm21cxnni4n7ciqckxxjan3h3skyss7mc95d"; depends=[curl dplyr forcats ggplot2 ggrepel htmltools httr jsonlite leaflet lifecycle magrittr purrr readr rlang rvest scales sf stringr xml2]; }; owmr = derive2 { name="owmr"; version="0.8.2"; sha256="0qlb5aw6n06yf8y2gd2fjp8kp3w0xgqh3fka7rxqndgvaqmin1a6"; depends=[httr jsonlite magrittr plyr tibble tidyr]; }; - ows4R = derive2 { name="ows4R"; version="0.3-1"; sha256="0xi2xxyc6lxkwgaans0v2xj9jd0pvgxlyc5rmjilnc0afzwdv3x9"; depends=[geometa httr jsonlite keyring openssl R6 sf terra XML]; }; + ows4R = derive2 { name="ows4R"; version="0.3-2"; sha256="0p2yyzjxfkj3pr490ddcqxniyb3635rg26jmnc1hs29bv7aq014s"; depends=[geometa httr keyring openssl R6 sf terra XML]; }; ox = derive2 { name="ox"; version="0.1.0"; sha256="0j0va301bmppvmk6paqaqqaw85h8yf92i3pz7i59f2j8q9im82rx"; depends=[]; }; oxcAAR = derive2 { name="oxcAAR"; version="1.1.1"; sha256="1szifw978qr7v8n178jhg4ap2jwvfnwjl2izbbiydwx8q1fyj2q4"; depends=[jsonlite stringi stringr]; }; oysteR = derive2 { name="oysteR"; version="0.1.1"; sha256="11zg959h9104hh8wid4003s8c4z9xhmicj39cc5vq1j8g1g7ilr7"; depends=[cli dplyr glue httr jsonlite purrr rjson rlang stringr tibble tidyr yaml]; }; @@ -13597,7 +13681,7 @@ in with self; { pRF = derive2 { name="pRF"; version="1.2"; sha256="17srabk7mam16rdzc5g9ggdrhjjk8wibny40gxvgzkv7qgq7m80x"; depends=[dplyr ggplot2 multtest permute randomForest reshape2]; }; pROC = derive2 { name="pROC"; version="1.18.0"; sha256="1abvbzdss12n64pp9vlgnn0q3abh0nj4n0a8cinwwvhphjrm9vym"; depends=[plyr Rcpp]; }; pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; }; - pRecipe = derive2 { name="pRecipe"; version="0.4.0"; sha256="0k8800043dq9ddx0xwvpqvzkfdklbmsb1svn9kvls20c93rxwvf0"; depends=[data_table ggplot2 ggpubr ncdf4 R_utils raster sf]; }; + pRecipe = derive2 { name="pRecipe"; version="0.4.2"; sha256="0z1jsnc5f2j2gq55sgqxys94l9cpqynlrhn8nqqxg4a2vc2b59yp"; depends=[data_table ggplot2 ggpubr ncdf4 R_utils raster sf]; }; pRepDesigns = derive2 { name="pRepDesigns"; version="1.0.0"; sha256="189jmh78vcr174lf0s283pbhknr87h3bq02gvvpg5r2hv31gdgjl"; depends=[]; }; pTITAN2 = derive2 { name="pTITAN2"; version="1.0.2"; sha256="1mwx7k8ql4l572xvwb5gns9n4kqk779wwm4sg7nbgzz8xvcdh665"; depends=[data_table]; }; pa = derive2 { name="pa"; version="1.2-2"; sha256="0w76m169qghm8r3z319jv901ri136c9maa5j0r9kbgpdnq25v53w"; depends=[ggplot2]; }; @@ -13608,15 +13692,15 @@ in with self; { packageDiff = derive2 { name="packageDiff"; version="0.1"; sha256="0qxgx2ac0x7p9j9clj7hgjahf7xwzcjkcw0d2n6w0r9c4g0mw9w2"; depends=[diffr htmlwidgets]; }; packageRank = derive2 { name="packageRank"; version="0.7.2"; sha256="0z1ssfjkd831l6mf08qvch73h6sa3kpag46ybwyzbcx0hq6s0dqq"; depends=[cranlogs data_table ggplot2 ISOcodes memoise pkgsearch R_utils RCurl rversions sugrrants]; }; packagetrackr = derive2 { name="packagetrackr"; version="0.1.1"; sha256="0xjq27j7bd7lps0vp9gdinxn19wl10k2cp9wb2xjih7p6l0wd57g"; depends=[dplyr httr magrittr rappdirs]; }; - packcircles = derive2 { name="packcircles"; version="0.3.4"; sha256="05pv5c4k4njkr0xw6i6ksiy34hcyx2lbiqpv5gxw81yrkm0rxfyk"; depends=[Rcpp]; }; + packcircles = derive2 { name="packcircles"; version="0.3.5"; sha256="0m8ivgc5y1f9ramqw6sxb02ri6aqxz3av0l5csl32mdldrb126nc"; depends=[Rcpp]; }; packer = derive2 { name="packer"; version="0.1.3"; sha256="0b51nag4dmjxb8fb6z79j92dx1s6427rhmr2piaqdzrfbk9kd7dh"; depends=[assertthat cli fs htmlwidgets jsonlite roxygen2 rprojroot rstudioapi usethis]; }; packrat = derive2 { name="packrat"; version="0.8.1"; sha256="1ni3xn51xifdb2bya5z54jn4nxgss6f23b3hn126j2kaz80h7ns5"; depends=[]; }; pacman = derive2 { name="pacman"; version="0.5.1"; sha256="0z7gngd6h83cpjhq1vg75wvzhdjbgjh7gj5d4zvvi9gd2lmagjcy"; depends=[remotes]; }; paco = derive2 { name="paco"; version="0.4.2"; sha256="0p02fdc5f7d7sbdvxill8jln76p1ndiw95k6s9j41slfriq647vd"; depends=[ape plyr vegan]; }; - pacotest = derive2 { name="pacotest"; version="0.4.1"; sha256="1ry0lwzphgivmlc8swhk6l26q4ca6x36rm8r7vvjb64y0fvayqk5"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; + pacotest = derive2 { name="pacotest"; version="0.4.2"; sha256="0zdrvcrf6ynid2wpngdslxzkpc4grcvrf6bzbrni9rvp94sfzjlf"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; pacs = derive2 { name="pacs"; version="0.4.8"; sha256="0p27bhpq4dvgzqay33vaj3h77hcxr7d7r3f6hpb424c0sqil65v2"; depends=[curl jsonlite memoise stringi xml2]; }; pacviz = derive2 { name="pacviz"; version="1.0.2"; sha256="0br6gbxh010hybqlhsh90wgqj98wwach5a3hfb39kkj4xkk9il7q"; depends=[circlize e1071 plotrix]; }; - padr = derive2 { name="padr"; version="0.6.1"; sha256="0xgzkvygg4ss3c4q1fspmarbagr14i1z1ka6lnfcxmh4m5zcir17"; depends=[dplyr lubridate Rcpp rlang]; }; + padr = derive2 { name="padr"; version="0.6.2"; sha256="0mgjdva2yj9m0mps69gafy3w1c4zhik002b5b2j2zvbv3m34mw97"; depends=[dplyr lubridate Rcpp rlang]; }; pafdR = derive2 { name="pafdR"; version="1.0"; sha256="1yimsd4h23hcf752p5flda3dqk8hgn6qm9k0pmbapxj4jbsw14w5"; depends=[curl exams stringr]; }; pafr = derive2 { name="pafr"; version="0.0.2"; sha256="0ali4m1pv73y88x1dk5rvmg1ysy48janjnc1hnqfcndszfz2b0wm"; depends=[dplyr ggplot2 rlang stringr tibble]; }; pagedown = derive2 { name="pagedown"; version="0.19"; sha256="1x26na8mqfrnlj5h3v1wxw1dhdxm891ckh0d23854fmss0yf6qrx"; depends=[bookdown htmltools httpuv jsonlite later processx rmarkdown servr websocket xfun]; }; @@ -13624,7 +13708,7 @@ in with self; { pagenum = derive2 { name="pagenum"; version="1.2"; sha256="0nid26wmrm76ifxqpqqry232q4alf80i7df1rg237qil8asx06k1"; depends=[]; }; pageviews = derive2 { name="pageviews"; version="0.5.0"; sha256="1fhlm2y288wx625y0glxybjb0xv9sqvvln35jqlwqq38h3grcpqd"; depends=[curl httr jsonlite]; }; pagoda2 = derive2 { name="pagoda2"; version="1.0.10"; sha256="18ip8j5l5c3hqw1xsf5wnyas55i2mhk09phy68kjkjdgcymmpg7c"; depends=[dendsort drat fastcluster igraph irlba magrittr MASS Matrix mgcv N2R plyr R_utils R6 Rcpp RcppArmadillo RcppEigen RcppProgress rjson rlang RMTstat Rook Rtsne sccore urltools]; }; - pagoo = derive2 { name="pagoo"; version="0.3.13"; sha256="0y28y62sg3l5k840xm6pajc0rygqm822ypbzcwx1ks5iw288dgbp"; depends=[BiocGenerics Biostrings dendextend DT GenomicRanges ggfortify ggplot2 heatmaply magrittr plotly R6 reshape2 S4Vectors shiny shinydashboard shinyWidgets vegan]; }; + pagoo = derive2 { name="pagoo"; version="0.3.17"; sha256="0scf40vyw7lh5jh4p28894fa05nfl8n71g55w9bs9gbkszmn792k"; depends=[BiocGenerics Biostrings dendextend DT GenomicRanges ggfortify ggplot2 heatmaply magrittr plotly R6 reshape2 S4Vectors shiny shinydashboard shinyWidgets vegan]; }; painbow = derive2 { name="painbow"; version="1.0.1"; sha256="10c8spknh7sqa4vl0q4bjdwd03nl4qk28hj2qa9sbyb1ryc7p4j9"; depends=[ggplot2]; }; painter = derive2 { name="painter"; version="0.1.0"; sha256="0qr6p13h50rlavcsamxmijfr4dfrbv1k088m28qf8a4gam3ap85b"; depends=[]; }; paintingr = derive2 { name="paintingr"; version="0.1.0"; sha256="0km21rv6f137nngx4nzamplzgzhfgijlh1skfvvkp0cbjxv17cpi"; depends=[]; }; @@ -13633,7 +13717,7 @@ in with self; { pairwise = derive2 { name="pairwise"; version="0.6.0-0"; sha256="0mcd5lm6yk1hd1r1ffs0l3gj85bamnjw77i6lh4973lggs0zxzdc"; depends=[]; }; pairwiseCI = derive2 { name="pairwiseCI"; version="0.1-27"; sha256="0yp9nibdrsddjqq6vdlfbpvmfgm209h99b6qqqd6wgfzng327822"; depends=[boot coin MASS MCPAN mcprofile]; }; pak = derive2 { name="pak"; version="0.3.1"; sha256="11vs377jfwxf8qpzf0pv5pkkdjzb6l3l5a35f2w1y1s88xz5rl1d"; depends=[]; }; - palaeoSig = derive2 { name="palaeoSig"; version="2.0-3"; sha256="1sn2nbiq037l81qvrqbg7gf1312g8vy574hsfng07qk1jpx7vwkk"; depends=[assertr dplyr forcats ggplot2 ggrepel magrittr MASS mgcv purrr rioja rlang TeachingDemos tibble tidyr vegan]; }; + palaeoverse = derive2 { name="palaeoverse"; version="1.0.0"; sha256="0p70y0vp3afmfk73p7dnykcn7adssrckq8di0y0znfmya6mqk8gr"; depends=[ape deeptime geosphere h3jsr httr pbapply sf stringdist]; }; palasso = derive2 { name="palasso"; version="0.0.8"; sha256="0cgxfzhp394c8xprc2k0qx9c274bbp0cpazk7xilfrgcgk08156i"; depends=[glmnet Matrix survival]; }; pald = derive2 { name="pald"; version="0.0.2"; sha256="0xix3sf6zqpl10asad7lhqp6yk9v8kz81pqmxbwb85in5lngz5nr"; depends=[glue igraph]; }; paleoTS = derive2 { name="paleoTS"; version="0.5.3"; sha256="1hpgyjnviw9gzy21rsa4vqkiyfpim5y70yrbjyq5z3ifanszggi5"; depends=[doParallel foreach mnormt]; }; @@ -13676,15 +13760,15 @@ in with self; { paperplanes = derive2 { name="paperplanes"; version="0.0.1.9"; sha256="1d9grc95xqxn91lvk8v7w3z90bhl8savkhihwshyjp8ij2xpzfkl"; depends=[]; }; parSim = derive2 { name="parSim"; version="0.1.4"; sha256="0iswcw52skx1hxb9bv9ihhwwyybprsk2615pmijsxp0bkzgsjc88"; depends=[dplyr pbapply snow]; }; parade = derive2 { name="parade"; version="0.1"; sha256="07x02j9jlldz4p0cyhw292041l3pziv56bhbzp4f0qpxhcbn5zn4"; depends=[]; }; - paradox = derive2 { name="paradox"; version="0.10.0"; sha256="08h92wk8splf0w3rach9zbk3xz13phgcd1yybmgbs0sj4vx93whd"; depends=[backports checkmate data_table mlr3misc R6]; }; + paradox = derive2 { name="paradox"; version="0.11.0"; sha256="03v26qb0l8yhys7z5v2p9pwnc5wh26fvq4p0a0rh67qap6157dyx"; depends=[backports checkmate data_table mlr3misc R6]; }; parallelDist = derive2 { name="parallelDist"; version="0.2.6"; sha256="01ly4hxwa64a0ya5gla8rvv72s9mcknsfznivjkh937pbjwb7iih"; depends=[Rcpp RcppArmadillo RcppParallel]; }; parallelMCMCcombine = derive2 { name="parallelMCMCcombine"; version="2.0"; sha256="18xw0s9lga2w981cx4daywp6b6gxvgl9mh68r13c5mmhis3b8v14"; depends=[mvtnorm]; }; parallelML = derive2 { name="parallelML"; version="1.2"; sha256="05j0rb81i8342m8drwgmgi1w30q96yf501d83cdq4zhjbchphbl1"; depends=[doParallel foreach]; }; parallelMap = derive2 { name="parallelMap"; version="1.5.1"; sha256="1qg7zpz5sd9jp8wzjqahkhipwj1jn192llwg06q4gv9mlcsac261"; depends=[BBmisc checkmate]; }; parallelPlot = derive2 { name="parallelPlot"; version="0.2.0"; sha256="04yr9fbvf3w0pw899zvk9ljjhsz775aiyhspm0bvaqaxzv8fkgx3"; depends=[htmlwidgets]; }; parallelly = derive2 { name="parallelly"; version="1.32.1"; sha256="146a9i999vrflr4g1fph1pgkl4bq0dw102bjw8pp1zy7kbsqbiii"; depends=[]; }; - paramGUI = derive2 { name="paramGUI"; version="2.1.4"; sha256="0k2wkl99ji3w7xmd9k7zzvrr3dbf3237q7lxm527dnrq331pmxmi"; depends=[colorspace fields shiny shinydashboard TIMP]; }; - parameters = derive2 { name="parameters"; version="0.19.0"; sha256="10cl8vgcjncnry6qkkr41yyh8ngxxn81hwqqqix9g7pwpbf3c2mf"; depends=[bayestestR datawizard insight]; }; + parallelpam = derive2 { name="parallelpam"; version="1.0"; sha256="0fml4cgwqpwj8dqfbih1py2pvqksfiqd9v9442g0ls6kacjdmaph"; depends=[memuse Rcpp]; }; + parameters = derive2 { name="parameters"; version="0.20.0"; sha256="16y92q4h385sqc7xgdcrdmdvw0l8plxxbhcdsnx4gqqgm8di9l9p"; depends=[bayestestR datawizard insight]; }; paramhetero = derive2 { name="paramhetero"; version="1.0.0"; sha256="1zkwzmh3igkwfq87v3rmp3axfspl20qn4qmpyqql6ain564yyabw"; depends=[ggplot2 MASS]; }; paramlink = derive2 { name="paramlink"; version="1.1-5"; sha256="0a21cy8q3zv96zdq5q2hfkb2ga1fham00in7wfyyd9wpck9gp009"; depends=[assertthat kinship2 maxLik]; }; paramlink2 = derive2 { name="paramlink2"; version="1.0.3"; sha256="0ypn0fdrphblw64sdnfmyf9q4zbakqvl4xzr451phvhx52n1gb73"; depends=[pedprobr pedtools]; }; @@ -13704,10 +13788,10 @@ in with self; { parsedate = derive2 { name="parsedate"; version="1.3.1"; sha256="1cfinqlbchmkhkgmdwiy3mnxb17lp02jfk2gpw56hq9vh6wimhqz"; depends=[]; }; parsel = derive2 { name="parsel"; version="0.2.1"; sha256="0p5w7gdnakkgh36p3mknlz0s8a0sawiwyas442zcxy35x3kymnyf"; depends=[lubridate purrr rlang RSelenium]; }; parsermd = derive2 { name="parsermd"; version="0.1.2"; sha256="15fy5vgzbrxq1yj4bgd0q1n5gjwvfh6s03ar5mj3hpp5mz6qmsdg"; depends=[BH checkmate cli dplyr lifecycle magrittr pillar purrr Rcpp readr rlang rmarkdown tibble tidyr tidyselect withr yaml]; }; - parsnip = derive2 { name="parsnip"; version="1.0.2"; sha256="171crglp6ncy41iyb60gj6xp7zn2vnbffgbgpszrahf6j2hhxvw4"; depends=[cli dplyr generics ggplot2 globals glue hardhat lifecycle magrittr pillar prettyunits purrr rlang tibble tidyr vctrs withr]; }; + parsnip = derive2 { name="parsnip"; version="1.0.3"; sha256="1s1d5zjwag5a13y67l7sz4zj1w0dv0k7vpb6inz4x87d5rgchfi1"; depends=[cli dplyr generics ggplot2 globals glue hardhat lifecycle magrittr pillar prettyunits purrr rlang tibble tidyr vctrs withr]; }; partDSA = derive2 { name="partDSA"; version="0.9.14"; sha256="1kp0cdsdjiay349jz22iqfzvspny8s343cfan8xahgf931k9h8p6"; depends=[survival]; }; partR2 = derive2 { name="partR2"; version="0.9.1"; sha256="06ky0hhrq0mcsn9rwrzvwn0rrjj0l8rxs0hqp10668gdq5hjk8bn"; depends=[dplyr ggplot2 lme4 magrittr pbapply purrr rlang tibble tidyr]; }; - partialised = derive2 { name="partialised"; version="0.1.0"; sha256="19rm2fcv5am5512y1p77nss715dcdfrg3hvrgy2b49jr0f9i8d25"; depends=[pillar purrr rlang vctrs]; }; + partialised = derive2 { name="partialised"; version="0.1.1"; sha256="0rb9d5p21f1y0c8arwh1lf516vw30qinf15rkrv49qw97dvvb9db"; depends=[pillar purrr rlang vctrs]; }; particle_swarm_optimisation = derive2 { name="particle.swarm.optimisation"; version="1.0"; sha256="0y3pq129irxifiph40mf027gbc02c4pwkchs305pcbj3vr9pwsyw"; depends=[R6 rgl]; }; particles = derive2 { name="particles"; version="0.2.3"; sha256="0x76q9qcfaraiy0w8hrdk4ws16w1a8m363a3l4cphpi6xi329027"; depends=[cpp11 digest dplyr igraph mgcv rlang tidygraph]; }; partition = derive2 { name="partition"; version="0.1.4"; sha256="19f1j6hm35c57r2x51nh2kns3jyd85xxg06lgd94kb13brr1hk2v"; depends=[crayon dplyr forcats ggplot2 infotheo magrittr MASS pillar purrr Rcpp RcppArmadillo rlang stringr tibble tidyr]; }; @@ -13717,6 +13801,7 @@ in with self; { partitions = derive2 { name="partitions"; version="1.10-7"; sha256="1kxiy1wl7dr39kyfg2y9hd67s32knd83r2jsb7j9p3vg8iqq7yqb"; depends=[gmp mathjaxr polynom Rdpack sets]; }; partools = derive2 { name="partools"; version="1.1.6"; sha256="0w7p88y4ab4v14k16k95cyb5f3yl2g6ban11775rmi2h9xqkfxk8"; depends=[data_table pdist regtools]; }; partsm = derive2 { name="partsm"; version="1.1-3"; sha256="17md3j41knscllckiqnvkqvf2v0fgsig101vgg6z5ic1yzvzfxgs"; depends=[]; }; + parttime = derive2 { name="parttime"; version="0.1.0"; sha256="0zc0gbmycbrp3f0wr5mw3mp6ighvrb0rw3d8ilr4b1kqa20ws54q"; depends=[crayon lubridate pillar vctrs]; }; party = derive2 { name="party"; version="1.3-11"; sha256="174cc5b5qwv9r4qmm65c4n4zk6cxjf6vjmznpp8cc2ylflbim91y"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; partykit = derive2 { name="partykit"; version="1.2-16"; sha256="1cnx6qbw5svwh3nq40n5vr20179ihd3jgznm7mz4k50qkkid8hz6"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; parzer = derive2 { name="parzer"; version="0.4.1"; sha256="0v97cfjkggkdhv8gc0ffgbijgwxzpz7n44z7gsmkvggjj3wsxvpr"; depends=[Rcpp withr]; }; @@ -13727,7 +13812,6 @@ in with self; { password = derive2 { name="password"; version="1.0-0"; sha256="1ijzqdw54l8wvpy6ys28njvhplzjxzzi5i9y41vjnrr88n13977v"; depends=[]; }; pasteAsComment = derive2 { name="pasteAsComment"; version="0.2.0"; sha256="1837s2bfxpgjs15q1brr166iyar2xzvmdj0qxknb8hnqrmi207mf"; depends=[clipr rstudioapi]; }; pastecs = derive2 { name="pastecs"; version="1.3.21"; sha256="0z4dic94ar646w7zc2ggi5hgvf2qnznsani94c5pyql8zspz47lc"; depends=[boot]; }; - patPRO = derive2 { name="patPRO"; version="1.1.0"; sha256="1l6q6glklmfgivs4gw0v8q4qa57wr2bna477sn2v401hcwmgnfyn"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; }; patchDVI = derive2 { name="patchDVI"; version="1.10.1"; sha256="14zhl2skj20gc09ycrycdq2slqrpbh6nf0lcsxf55kvshnwnmknc"; depends=[]; }; patchSynctex = derive2 { name="patchSynctex"; version="0.1-4"; sha256="1li3kw7a77sx6dss8pnxzb0p0sdy1kfm1zdnmhhj043zihrryd5p"; depends=[stringr]; }; patchwork = derive2 { name="patchwork"; version="1.1.2"; sha256="0xw9mh1qakj131nw98icxrxwvdlwy2ngwvmagrqr3m84sz9dbffs"; depends=[ggplot2 gtable]; }; @@ -13736,14 +13820,14 @@ in with self; { path_chain = derive2 { name="path.chain"; version="0.2.0"; sha256="1p28mcar4krgvkgn02xrlwcpzchnppn2l2k2iwh511c3qrfpy653"; depends=[logger rlang stringi]; }; pathdiagram = derive2 { name="pathdiagram"; version="0.1.9.1"; sha256="018frv1n3x0bf1682jibnm5k2dlkg85xa9mps28l22a0z8bplbv5"; depends=[shape]; }; pathfindR = derive2 { name="pathfindR"; version="1.6.4"; sha256="140m63cwwk3xrmgr8jrxa0nv0wjmkzqlrdbgq6g2g837khwfjj7y"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 ggraph ggupset igraph KEGGgraph KEGGREST knitr magick msigdbr org_Hs_eg_db pathfindR_data R_utils rmarkdown]; }; - pathfindR_data = derive2 { name="pathfindR.data"; version="1.1.2"; sha256="0p0infg5hxw40bacgni5w1a8xb29wc0xrd8mjsnlfarr8wygd9fl"; depends=[]; }; + pathfindR_data = derive2 { name="pathfindR.data"; version="1.1.3"; sha256="1gvlfkpk4fxh10vs792qdj5k3yvlc3dizh780c5a2xvdy1jj6gwm"; depends=[]; }; pathlit = derive2 { name="pathlit"; version="0.1.0"; sha256="0harvldkhq2c1wb9i4n72w1s3frhjzyn4cjpwk1n350zg12kh9gz"; depends=[httr jsonlite testthat timeSeries usethis]; }; pathmapping = derive2 { name="pathmapping"; version="1.0.2"; sha256="0kx4wxf6lhi58sif8fzr5w4wa0i5253fq4v0ynp721fv1hkvmhvz"; depends=[]; }; pathmodelfit = derive2 { name="pathmodelfit"; version="1.0.5"; sha256="1nxcnmz9r99znqmwibvvix7h3acp22cs6wp1jmp21p862ncabll8"; depends=[lavaan]; }; paths = derive2 { name="paths"; version="0.1.1"; sha256="19fl54r2myb9ky8ffnx71xw23a8dlg15sj9v36xcpv79z61ryws9"; depends=[BART boot gbm ggplot2 metR pryr tidyr twang]; }; - pathviewr = derive2 { name="pathviewr"; version="1.1.3"; sha256="1xx73ah9af1q422rf346ip3w8jbxvs14qn9jv6bj7vnpw3nxndxq"; depends=[anomalize cowplot data_table dplyr fANCOVA ggplot2 lubridate magrittr purrr R_matlab stringr tibble tidyr tidyselect]; }; + pathviewr = derive2 { name="pathviewr"; version="1.1.5"; sha256="0b518jhksv790zzgmykr5panh8dgl8v4abbxlbr1zayhbfz213c0"; depends=[anomalize cowplot data_table dplyr fANCOVA ggplot2 lubridate magrittr purrr R_matlab stringr tibble tidyr tidyselect]; }; pathwayTMB = derive2 { name="pathwayTMB"; version="0.1.3"; sha256="1zrs7l9vifrsixk20p0nxs6s8kadc3l3mj933s7ribaby2fb0r8m"; depends=[BiocGenerics caret clusterProfiler data_table glmnet maftools pROC purrr randomForest RColorBrewer survival survminer]; }; - patientProfilesVis = derive2 { name="patientProfilesVis"; version="2.0.2"; sha256="0w85y74n46665w8d4lv9pb88hmarn6ax9qsv0sl1xw1q7iby2pzx"; depends=[clinUtils cowplot ggplot2 gridExtra knitr plyr reshape2 scales stringr]; }; + patientProfilesVis = derive2 { name="patientProfilesVis"; version="2.0.5"; sha256="0kb84jpcmnyakggbb8m96qbbc3a7yj1025k13nhirx4i459d0913"; depends=[clinUtils cowplot ggplot2 gridExtra knitr plyr reshape2 scales stringr]; }; patrick = derive2 { name="patrick"; version="0.2.0"; sha256="1ghjvm82hgal091hfjfyz3ndg32xsggip5pp4y0g7rmrzpfjmpjs"; depends=[dplyr purrr rlang testthat tibble]; }; patternator = derive2 { name="patternator"; version="0.1.0"; sha256="0s4vrhdfblllnhpz2awhhrkwm8d4170xg7fpsp7kvvqy8z8biwvi"; depends=[data_table]; }; patternize = derive2 { name="patternize"; version="0.0.3"; sha256="072wjjinbkvrijqb90hk6h964m1h2gznj69jq3pidbzcr1xl93g1"; depends=[abind ClusterR dplyr geomorph imager magrittr Morpho purrr raster rgdal RNiftyReg sp vegan]; }; @@ -13753,7 +13837,7 @@ in with self; { paws = derive2 { name="paws"; version="0.1.12"; sha256="0kn1z045r106fwqcaz52hb02bhrcblh479cajfjiq480s1iljcw6"; depends=[paws_analytics paws_application_integration paws_compute paws_cost_management paws_customer_engagement paws_database paws_developer_tools paws_end_user_computing paws_machine_learning paws_management paws_networking paws_security_identity paws_storage]; }; paws_analytics = derive2 { name="paws.analytics"; version="0.1.12"; sha256="04gnaxmj21l312xkrsd9bisi0bz9h6h5fyhwlqylcxi077z1yb2g"; depends=[paws_common]; }; paws_application_integration = derive2 { name="paws.application.integration"; version="0.1.13"; sha256="0qxrjmqywp4ychjwfbripfin4vlv0k041ycmr3pjr6p3dg910i3w"; depends=[paws_common]; }; - paws_common = derive2 { name="paws.common"; version="0.5.1"; sha256="17cfvx2ma0zcrj3grpsadx8p5r97s2z6c23qqmzry7ys9mn6k9f1"; depends=[base64enc curl digest httr jsonlite Rcpp xml2]; }; + paws_common = derive2 { name="paws.common"; version="0.5.3"; sha256="090csb0wjnsfhkphws5anrnml18y1k54yi48lxav8wp5kqj4wlb6"; depends=[base64enc curl digest httr jsonlite Rcpp xml2]; }; paws_compute = derive2 { name="paws.compute"; version="0.1.13"; sha256="1s7g4y2h763xf32p08drs3ygkfqb2zjikkgxb7yl91gk13zp7kjm"; depends=[paws_common]; }; paws_cost_management = derive2 { name="paws.cost.management"; version="0.1.12"; sha256="0in4f8ygw5g2v6vl3lz2y0v51llglh8b1ymbd04d54xxlgn83knh"; depends=[paws_common]; }; paws_customer_engagement = derive2 { name="paws.customer.engagement"; version="0.1.12"; sha256="0ac6hzn4ilfjhzdmc9x80999fl18cz16mky31qd3y09m93w2xkdj"; depends=[paws_common]; }; @@ -13766,7 +13850,7 @@ in with self; { paws_security_identity = derive2 { name="paws.security.identity"; version="0.1.12"; sha256="092lz2ipn5iqr593x7ra8c0bj64yf6315mdc3llgwrjyb4vfxif9"; depends=[paws_common]; }; paws_storage = derive2 { name="paws.storage"; version="0.1.12"; sha256="06m887vpqp5d6k3zxdlga599dsv8v3rladk7xqaxqnld1f17am04"; depends=[paws_common]; }; pbANOVA = derive2 { name="pbANOVA"; version="0.1.0"; sha256="0m7946jv4zbs0k74klxkl8nbwirc48g6paqrfl5fadkd17xxqq2j"; depends=[DescTools dplyr lmtest MASS plyr Rmisc]; }; - pbapply = derive2 { name="pbapply"; version="1.5-0"; sha256="0m8a0ygwl98cs0vcha5gs9f7z8whcplwxhravhs9bfp5hvigxzgg"; depends=[]; }; + pbapply = derive2 { name="pbapply"; version="1.6-0"; sha256="0qbzqgxz3lm97y0k9v2radqblzb4r5zkfrjw5wj1a91dvxz3xhg8"; depends=[]; }; pbatR = derive2 { name="pbatR"; version="2.2-13"; sha256="01ra1ggdpxdl1xqjdh86qynr5gkgzw01ww6j9bwgx4mj20i6j1ha"; depends=[rootSolve survival]; }; pbbd = derive2 { name="pbbd"; version="1.0.0"; sha256="07g029qw5949500c879iv86zwg2fldqrz8wzfz335jmcinqimgj6"; depends=[ibd]; }; pbcc = derive2 { name="pbcc"; version="0.0.3"; sha256="11qnmxky23s6dak0kpd22h9la7khn4zwr9msk0liry8i6slwhchg"; depends=[ggplot2 ggpubr qcc rgenoud]; }; @@ -13810,14 +13894,15 @@ in with self; { pcr = derive2 { name="pcr"; version="1.2.2"; sha256="1lmgm8k3s7780ivrdj0zk1ninx7b5jffir6q5p2p47h62qqjmp5d"; depends=[ggplot2]; }; pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; }; pcsstools = derive2 { name="pcsstools"; version="0.1.1"; sha256="1vp4lflxzzgjfh1nkkfvnb74pjmbcdgrc1hlakjd8i5rw7swvr20"; depends=[gtools Rdpack]; }; - pct = derive2 { name="pct"; version="0.9.3"; sha256="1y3cmqirh003hyg80bnl0rpbcp9h9bzlv0lbjxq0wmvsb84hbqbn"; depends=[boot readr sf stplanr]; }; + pct = derive2 { name="pct"; version="0.9.7"; sha256="08cw92b5kr3fwz9dj1hnfxiygcg6aqka4v90i7km86bsbicvia7j"; depends=[boot crul readr sf stplanr]; }; pcts = derive2 { name="pcts"; version="0.15.5"; sha256="03iammgirj3vnrwh0fxvy3r08z3da23jbjkb2fzpya1pxfb2rnjq"; depends=[BB gbutils lagged lubridate Matrix mcompanion PolynomF Rdpack sarima xts zoo]; }; + pcv = derive2 { name="pcv"; version="1.0.0"; sha256="1kszyww5n8j7kfb6s5wvn19ch7h1d64dhqgz6wvgx6vp21ya6qks"; depends=[]; }; pdR = derive2 { name="pdR"; version="1.8"; sha256="1sjlcd8g564jrwmlhpjypgwqywz3ggq4lb6xwqzc1basbsx5zfrn"; depends=[boot car coefplot lmtest papeR plm sandwich]; }; pdSpecEst = derive2 { name="pdSpecEst"; version="1.2.4"; sha256="1sf2d7vh7a1qc0cq230an8pzg9qi9g640z0ql8x2pp9wfawfzn1f"; depends=[ddalpha multitaper Rcpp RcppArmadillo Rdpack]; }; pda = derive2 { name="pda"; version="1.0-2"; sha256="1y067d3v9qlirawy01nmsh4fdynfh80mvg9r55kkban2z7xhql9j"; depends=[data_table httr jsonlite Rcpp RcppArmadillo rvest survival]; }; pdc = derive2 { name="pdc"; version="1.0.3"; sha256="0503n7aiy0qrl790yfjvpm7bbyz1i4818rlg96q0fvzb58zqmyvc"; depends=[]; }; pder = derive2 { name="pder"; version="1.0-2"; sha256="0qrf0igxzalvsanj1mqryi0xl9lq0wlpg8bbgasbx3ibq4yqwn0s"; depends=[plm]; }; - pdfCluster = derive2 { name="pdfCluster"; version="1.0-3"; sha256="13m7b2wivvf58vyqbysj4r04w0nj2b5x0xnaxip712a6c66x1h7l"; depends=[geometry]; }; + pdfCluster = derive2 { name="pdfCluster"; version="1.0-4"; sha256="0d52xmrzsjc51j0gzd3729rjqh391643yq840b6hlpc2w4ycc46m"; depends=[geometry]; }; pdfetch = derive2 { name="pdfetch"; version="0.2.7"; sha256="1pyx6h9s0y2qx3wrdjk5rfg2wh023zjhrkryvdaynz667rjxgr0w"; depends=[curl httr jsonlite lubridate reshape2 stringr XML xml2 xts zoo]; }; pdfminer = derive2 { name="pdfminer"; version="1.0"; sha256="0hm9nalazqcg4n1sqcjan8wm1rvv4lnflmlkrqkj5yhhmza7xkfh"; depends=[checkmate jsonlite]; }; pdfsearch = derive2 { name="pdfsearch"; version="0.3.0"; sha256="0mk1s8b7cdz025xn9kg5xnw388sndhjm80ckf71daxviknrzcscf"; depends=[pdftools stringi tibble tokenizers]; }; @@ -13840,19 +13925,18 @@ in with self; { pecora = derive2 { name="pecora"; version="0.1.1"; sha256="0l66brd5d24hn279ck785jy4qnxiv9lc3d1czh4f3l25d0hj99xi"; depends=[matrixStats Rcpp RcppArmadillo]; }; pedSimulate = derive2 { name="pedSimulate"; version="1.4.0"; sha256="0x1djd9kjnbp8wrx2iy1hh3psf77lmhyipzdbyysd95ym6wkldvk"; depends=[]; }; pedalfast_data = derive2 { name="pedalfast.data"; version="1.0.0"; sha256="02s6igrybcfs8nyxr50iiwclhrwnq3x2x5w886imrlp2wbkf13m4"; depends=[]; }; - pedbp = derive2 { name="pedbp"; version="1.0.1"; sha256="0wc8y9wfv7spwww4l15nmjhlmlx8mpm0l6msn3pymv5kw7jipdip"; depends=[ggplot2 scales]; }; + pedbp = derive2 { name="pedbp"; version="1.0.2"; sha256="0yc6185i3jzpwkpmkm38vggyfba0pvz6hvzqfkl6ch591dvkldch"; depends=[ggplot2 scales]; }; pedbuildr = derive2 { name="pedbuildr"; version="0.2.1"; sha256="19yzfg5jms2qnww4p8npmk9815hrgqsbd49h8pi62yy9kjqnccai"; depends=[forrel glue pedprobr pedtools]; }; pedgene = derive2 { name="pedgene"; version="3.6"; sha256="0h66yshna10fannpdvi0m83s53b1hmnjym2mvc7ypcgr1glq6j13"; depends=[CompQuadForm kinship2 Matrix survey]; }; pedigree = derive2 { name="pedigree"; version="1.4.2"; sha256="1b3zhjn6sl1pnkfqim6xzk6qdak6acdpim585xhjl1rbc41540qx"; depends=[HaploSim Matrix reshape]; }; - pedigreeTools = derive2 { name="pedigreeTools"; version="0.1"; sha256="0kgbjyw9dlp4s91cyg5w0p2vn2h9pg9ixrhc5pwvkp3v1acd0xfm"; depends=[Matrix]; }; pedigreemm = derive2 { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; }; pedmod = derive2 { name="pedmod"; version="0.2.4"; sha256="1xr98vp2s3s2cw4bjdw6156zas15jxvp9fbyz9rxd68i3zrblplx"; depends=[alabama BH psqn Rcpp RcppArmadillo testthat]; }; - pedmut = derive2 { name="pedmut"; version="0.3.0"; sha256="0w42jhgrkf5f1baz2jb94fyccm0wx94vg0g1px4p39jvpknz9d6a"; depends=[]; }; + pedmut = derive2 { name="pedmut"; version="0.4.0"; sha256="19m09mwxs58qsbc7h9vjax6dhjlcz65razhmdb6l5y8w1dq2v9gw"; depends=[]; }; pedometrics = derive2 { name="pedometrics"; version="0.12.1"; sha256="06s1iyv2nldqqkh1n3cgl3a7ribk17kyadgfx76lpgy016fi7vz5"; depends=[lattice latticeExtra Rcpp]; }; pedprobr = derive2 { name="pedprobr"; version="0.7.0"; sha256="089wrsx8qx2isz20xqjmnficzb62n8afyskkbz726dymf942pk3a"; depends=[pedmut pedtools]; }; - pedquant = derive2 { name="pedquant"; version="0.2.0"; sha256="1idi1vfhc8hs6lm6xzcn5jkgbjsn3fcj6c1c3c5ifzq1jckg48fa"; depends=[curl data_table echarts4r httr jsonlite lubridate PerformanceAnalytics readr readxl rvest stringi TTR webdriver xefun xml2 zoo]; }; + pedquant = derive2 { name="pedquant"; version="0.2.1"; sha256="0kg29nsywrx8xczk6zw2xl83f5g0wxf6iwkhgawq1am3anr64ck6"; depends=[curl data_table echarts4r httr jsonlite lubridate PerformanceAnalytics readr readxl rvest stringi TTR xefun zoo]; }; pedsuite = derive2 { name="pedsuite"; version="1.1.0"; sha256="19vbfn8dy7a4hrrv8zsja721lchng55gvc26xlkzx5dl96d2xp9w"; depends=[dvir forrel ibdsim2 paramlink2 pedbuildr pedmut pedprobr pedtools ribd segregatr verbalisr]; }; - pedtools = derive2 { name="pedtools"; version="1.3.0"; sha256="0nn6vax46b8lrqrkq153kvnd9708zfz0wn07qkfhi3dj73inh8c9"; depends=[kinship2]; }; + pedtools = derive2 { name="pedtools"; version="2.0.0"; sha256="0svr7n5vy315dw3chj4q0xyc1wvc1z7kgb7n6izzgzjx4vaykwnp"; depends=[kinship2]; }; peermodels = derive2 { name="peermodels"; version="0.10.3"; sha256="116xn5w7rwm9q0m7bj4z29l4hspj2nqdcxzir9dqpdqmf7z58v67"; depends=[curl httr httr2 jsonlite stringr]; }; pegas = derive2 { name="pegas"; version="1.1"; sha256="0ngd0laqbs139ji9hm9kwsm9rm56agw2yyfcplxgqva936l93fl7"; depends=[ape]; }; pell = derive2 { name="pell"; version="0.1.0"; sha256="1621lnv6sii072did3kj6wapgh9iiqajayvkrmz7q86bp89405sm"; depends=[]; }; @@ -13866,13 +13950,13 @@ in with self; { penalizedLDA = derive2 { name="penalizedLDA"; version="1.1"; sha256="1bw5wiixmmg1vr3v0d59vh67f0gy2rvr30bi58skvrkb25qcjq6l"; depends=[flsa]; }; penalizedSVM = derive2 { name="penalizedSVM"; version="1.1.3"; sha256="1mvp9qzk9gw8z13rsjkxgb98s6jqd8anzggfw71pziif0fd6zv10"; depends=[corpcor e1071 MASS mlegp statmod tgp]; }; penaltyLearning = derive2 { name="penaltyLearning"; version="2020.5.13"; sha256="0297rp5zn6d0axl44i3baq2vqvhrx6s8irrysvqdcx1rkishf4j0"; depends=[data_table ggplot2]; }; - pencal = derive2 { name="pencal"; version="1.2.2"; sha256="05fx8avdqhgshvx6q5yhkndjg77szls8i2n263kqzyk7qf8p0c4x"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme purrr survcomp survival survivalROC]; }; + pencal = derive2 { name="pencal"; version="1.3.1"; sha256="139hdgdpl55ag9azdm2rklnjmbg251517k4mi56xphzn78ji6ncc"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme purrr survcomp survival survivalROC]; }; pencopulaCond = derive2 { name="pencopulaCond"; version="0.2"; sha256="18hjjxnd0l2ms20ddqkghfbd4as5kq2rgwqzpz4y38k6nw76x511"; depends=[doParallel fda foreach igraph lattice latticeExtra pacotest quadprog TSP]; }; pendensity = derive2 { name="pendensity"; version="0.2.13"; sha256="1wcsib7m2161nqqrmgdvrj7lr8zq6njc9xr935hwfh3qbbgkmfjb"; depends=[fda lattice]; }; penfa = derive2 { name="penfa"; version="0.1.1"; sha256="1r8lq4kvlwlk7q0mdzkrdm9sx7lqq4l27jfxa1zcfh50sk1qlam2"; depends=[GJRM MASS mgcv trust]; }; penppml = derive2 { name="penppml"; version="0.2.0"; sha256="0r3wypzndg07vrbifs1h5wm4vcsd27z0gjhvlhgwq0pm1qgsgssc"; depends=[collapse devtools dplyr fixest glmnet magrittr matrixStats Rcpp RcppEigen rlang]; }; pense = derive2 { name="pense"; version="2.1.0"; sha256="1gz9p3khmv6v4m9aw314zdxdr33qmddb4s2pads0lm5iylngjd4j"; depends=[lifecycle Matrix Rcpp RcppArmadillo rlang]; }; - pensim = derive2 { name="pensim"; version="1.3.3"; sha256="1raap4zlqgcqh8x83kp1ss5qcn0p7bwribp4dhfhrh9rl92hh92a"; depends=[MASS penalized]; }; + pensim = derive2 { name="pensim"; version="1.3.6"; sha256="18z43p1iswmnvwaf3k5vhv6rzzmfn618har0a0bl9j5nfzx20rpx"; depends=[MASS penalized]; }; peopleanalytics = derive2 { name="peopleanalytics"; version="0.1.0"; sha256="0ay85yxx30p4i8icn8l8ppjddiwkbw1g6ymnmvw5gnd9hgmwbrx0"; depends=[]; }; peopleanalyticsdata = derive2 { name="peopleanalyticsdata"; version="0.2.1"; sha256="0ig65y4sl6wagzcvj8wwjw2dblb61hgbsqvp76wvxbhga1q0wnpf"; depends=[]; }; pepe = derive2 { name="pepe"; version="1.2.0"; sha256="1ihms63crxq0k7hd2yjyxmfw0yfy668srw012vi8mf8p31jdcr3j"; depends=[dplyr ggplot2 psych tidyr]; }; @@ -13886,7 +13970,7 @@ in with self; { perccalc = derive2 { name="perccalc"; version="1.0.5"; sha256="14557k7khc3l5m0vlam0fvbsb6p78v9gfcnx5ksxcvrab28xj7p3"; depends=[multcomp tibble]; }; percentiles = derive2 { name="percentiles"; version="0.2.2"; sha256="08gzl2qq0856nj20bdxl3r0a7p5f4cjmvxkaqkjvq4n275ghvskq"; depends=[assertive_types assertthat dplyr R6]; }; perfectphyloR = derive2 { name="perfectphyloR"; version="0.2.1"; sha256="1i1h5k2aqaqygd8gzq2bmz266mjzdi2mfikkz6hzmhi2il8708w9"; depends=[ape phytools Rcpp RcppArmadillo]; }; - performance = derive2 { name="performance"; version="0.10.0"; sha256="15yx75y17h3l1v7jpp8zbygy64lz7kds5yrgd7wrzw56564d2rhb"; depends=[bayestestR datawizard insight]; }; + performance = derive2 { name="performance"; version="0.10.1"; sha256="1m2zzznfbla8qdm0kxbj5vp431kpygpi4d70042hkg1ly3fyg7pz"; depends=[bayestestR datawizard insight]; }; performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; }; pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; periscope = derive2 { name="periscope"; version="1.0.1"; sha256="06rhi77a7561a0k99sn9h0pxfgar4s8iyg2mligyig2z8j66dcqb"; depends=[DT fresh ggplot2 lubridate shiny shinyBS shinydashboard writexl yaml]; }; @@ -13937,7 +14021,7 @@ in with self; { phangorn = derive2 { name="phangorn"; version="2.10.0"; sha256="1kjxp352jdk1amxpk9jrql490d0qy79zm65y8szyxrm1adqghlyi"; depends=[ape digest fastmatch generics igraph Matrix quadprog Rcpp]; }; pharmaRTF = derive2 { name="pharmaRTF"; version="0.1.4"; sha256="1h16r4yhlm6mbwq3k24ssm70bsrg2hvykqh8dayigz5wi2nq5c1f"; depends=[assertthat huxtable purrr stringr]; }; pharmr = derive2 { name="pharmr"; version="0.73.1"; sha256="1g37p9v7kn1x4f2fw8lz30cvfl11b8v2fignddfymllzwkz7xmgp"; depends=[altair reticulate]; }; - phase = derive2 { name="phase"; version="1.2.5"; sha256="0nnpki44qyikavx8dpayn0jk0jbznkb1w4jcp06j5b8c70a04gc9"; depends=[behavr circular lubridate plotly pracma signal zeitgebr zoo]; }; + phase = derive2 { name="phase"; version="1.2.7"; sha256="168b76kqfzazaszc2k6iha58pffi1g6rpq69ndr3p2xscvb9jcy8"; depends=[behavr circular lubridate plotly pracma signal zeitgebr zoo]; }; phase1PRMD = derive2 { name="phase1PRMD"; version="1.0.2"; sha256="0gr73nsp0an0ci6l86h9fw6l791jdw0b1497qi58w25zypggdyac"; depends=[arrayhelpers coda dplyr ggplot2 gridExtra kableExtra knitr MASS plyr RColorBrewer reshape2 rjags]; }; phase1RMD = derive2 { name="phase1RMD"; version="1.0.9"; sha256="0dnyqa6jias2jqjqjpiq32jnd21ghb2shw45vdq8b5xyb8rxclwj"; depends=[arrayhelpers boot coda ggplot2 mvtnorm rjags]; }; phaseR = derive2 { name="phaseR"; version="2.2.1"; sha256="1gq882r4jkq8f0xm3qmjh4zx540sgpdhlj8894dhf5g6vhgaa1kd"; depends=[deSolve]; }; @@ -13952,14 +14036,14 @@ in with self; { pheno = derive2 { name="pheno"; version="1.7-0"; sha256="1hg2gqz3ibawn5ah1hffgfp15cis75nwd04jha09mjpkn1w8h9lg"; depends=[nlme quantreg SparseM]; }; phenoCDM = derive2 { name="phenoCDM"; version="0.1.3"; sha256="1cyqwc36zwa2a4ljy0xnqz0hhw0r98qk2an5y002lrchkqydplwp"; depends=[rjags]; }; phenocamr = derive2 { name="phenocamr"; version="1.1.5"; sha256="1w9lzlmp4q2x12qhp4xmschcd79razy5fybq94381l7dshrwvzln"; depends=[changepoint daymetr httr jsonlite memoise MODISTools zoo]; }; - phenofit = derive2 { name="phenofit"; version="0.3.2"; sha256="1mmsaca52m4k73fbq8m29f118q02qps91glfxpw1jjbm5hqgazsv"; depends=[data_table dplyr ggplot2 gridExtra JuliaCall lubridate magrittr numDeriv optimx purrr Rcpp RcppArmadillo ucminf zeallot zoo]; }; + phenofit = derive2 { name="phenofit"; version="0.3.7"; sha256="1wmih8s56w54yi6wq5wrswi89i9wdyfsgz1xa1ca8vicmrn313br"; depends=[data_table dplyr ggplot2 gridExtra lubridate magrittr numDeriv optimx purrr Rcpp RcppArmadillo stringr ucminf zeallot zoo]; }; phenology = derive2 { name="phenology"; version="7.9"; sha256="0zacgrw5j6m5dhfkbbzawb832sp87nyp28g36nw150ha7q5qwjf2"; depends=[HelpersMG numDeriv optimx]; }; phenomap = derive2 { name="phenomap"; version="1.2.1"; sha256="0kpngxqrbahild5nblfvgx2kna43hqqldx5q3b127dnqwzbhfvbb"; depends=[doParallel dplyr phenex plyr raster rgdal stringr]; }; phenopix = derive2 { name="phenopix"; version="2.4.2"; sha256="0rrp4ch32hzlm727xpwsvfsw7d4qypv7iiq8hrg9az6nb39pbvp7"; depends=[bcp doParallel foreach gtools iterators jpeg plyr raster sp stringr strucchange zoo]; }; phers = derive2 { name="phers"; version="0.0.3"; sha256="1gyigamjsyfkmflp1i654csfsarx6jq984jbhbgwnsz6br0xppzh"; depends=[BEDMatrix checkmate data_table foreach iterators]; }; phiDelta = derive2 { name="phiDelta"; version="1.0.1"; sha256="0g1g5516p8i1gfpvsy75rdirib8sx1ki2mbf1cvgsnzh70h72gbv"; depends=[]; }; phia = derive2 { name="phia"; version="0.2-1"; sha256="0rv2akl5a488vax4sd9wnx765mch4vvcmg3iyxyljzl5kpqh5r00"; depends=[car Matrix]; }; - philentropy = derive2 { name="philentropy"; version="0.6.0"; sha256="1dpf4hfflp4mcql4na46wzcq1flabkipiwyycz9wj5xbxlmcz2hk"; depends=[KernSmooth poorman Rcpp]; }; + philentropy = derive2 { name="philentropy"; version="0.7.0"; sha256="1dw46p2bk68hqbc44629lywg5r1mdaz37ahccgmsx07fg8rf4wnf"; depends=[KernSmooth poorman Rcpp]; }; phm = derive2 { name="phm"; version="1.1.0"; sha256="12g3pppy5hq5lwwbv511fx523cwn7gqg9fr861p8kmbvjwgpw1pp"; depends=[data_table Matrix NLP shiny smallstuff tm]; }; phonR = derive2 { name="phonR"; version="1.0-7"; sha256="0al2cbynnbvmd90lk1w1g1ppslqq0ng8vbb6bl7m4kqwd2lgv056"; depends=[deldir plotrix splancs]; }; phonTools = derive2 { name="phonTools"; version="0.2-2.1"; sha256="01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"; depends=[]; }; @@ -13976,7 +14060,7 @@ in with self; { photobiologySensors = derive2 { name="photobiologySensors"; version="0.5.0"; sha256="122cfy6nsxngd8hnbq5frkgnzrb9fxw83l7mfwk0wy6gx7zsfx5s"; depends=[photobiology]; }; photobiologySun = derive2 { name="photobiologySun"; version="0.4.1"; sha256="15wp8q29m5c4qplind9098ikxmm1r60lw8cm0pa48lmh33638ia3"; depends=[photobiology]; }; photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.5.0"; sha256="04i2bm1chwj4mjfrvbiwl8p9h0jz4j04g6fg80fmppyd5mznay6r"; depends=[photobiology]; }; - photosynthesis = derive2 { name="photosynthesis"; version="2.0.3"; sha256="1f90j1a140nsxnibg3hz3vmad4542vny5ab331i887nkg0f5n5ar"; depends=[checkmate crayon dplyr furrr ggplot2 glue gunit magrittr minpack_lm nlme pkgnet purrr rlang stringr tealeaves tidyselect units]; }; + photosynthesis = derive2 { name="photosynthesis"; version="2.1.1"; sha256="17ipcgk11fnfrka5x95s4x5hncbfa38laav91475ghsni3hll4ay"; depends=[checkmate crayon dplyr furrr ggplot2 glue gunit lifecycle magrittr minpack_lm nlme purrr rlang stringr tealeaves tibble units]; }; phreeqc = derive2 { name="phreeqc"; version="3.7.4"; sha256="1xhpbi76y87phss10zlxpcz3fm3md3y4lh2cvypnx5ccxfdzflyl"; depends=[]; }; phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; }; phyclust = derive2 { name="phyclust"; version="0.1-32"; sha256="1ga2pzksp97psqbl484fikfnr4bl3bgyys86wb3ya904xxwghy6c"; depends=[ape]; }; @@ -13986,7 +14070,7 @@ in with self; { phylobase = derive2 { name="phylobase"; version="0.8.10"; sha256="0jzr1gdvmi4l640hwwzh9bxqmpja69bn3ygnaqx37awvyh7khi2s"; depends=[ade4 ape Rcpp rncl RNeXML]; }; phylocanvas = derive2 { name="phylocanvas"; version="0.1.3"; sha256="1l5br500lwwf7vp8wph5ykpkpqd15lypvhzy0c1cc8g8c6f7pckn"; depends=[ape htmlwidgets phylobase]; }; phyloclim = derive2 { name="phyloclim"; version="0.9.5"; sha256="107kilh0gwr84ig54g92zyk7zv553pky2bzpjqgf9fjwbm6fvmrs"; depends=[ape raster sp]; }; - phylocomr = derive2 { name="phylocomr"; version="0.3.2"; sha256="1qdhf6a7cqp12i4macy5wcbk6mf01fqbm4rc11yl63qr72zwrbhy"; depends=[sys tibble]; }; + phylocomr = derive2 { name="phylocomr"; version="0.3.3"; sha256="0l9ap65m927pqwxs051y4q7fmipn3kkpk1nkgis6q5fqgfxy0igi"; depends=[sys tibble]; }; phylogram = derive2 { name="phylogram"; version="2.1.0"; sha256="1p4h5pirc0m5pzc18q0jk3mcmb5n48gdf9abz03vml3a209xxl2v"; depends=[ape]; }; phylolm = derive2 { name="phylolm"; version="2.6.2"; sha256="04pz7i44s8w6py4nk2zilzjlkrf1c5dbb6jij7zfkk49hvslbynn"; depends=[ape future_apply]; }; phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; }; @@ -14009,7 +14093,7 @@ in with self; { picker = derive2 { name="picker"; version="0.2.6"; sha256="1n7h1lvrivy7czzhisd9p3g187ivcyhzyjj7ahkimyb296gy8z1b"; depends=[htmlwidgets]; }; pid = derive2 { name="pid"; version="0.50"; sha256="05s3xqf95d4avh7gkr49jsm8jzacbv694c3wgppkkc40zip6vkc7"; depends=[DoE_base FrF2 FrF2_catlg128 ggplot2 png]; }; piecemaker = derive2 { name="piecemaker"; version="1.0.1"; sha256="1i9k88i0rqsbf2564ims69x1pind1xgvljaf9smnnjpi77442jiw"; depends=[rlang stringi stringr]; }; - piecepackr = derive2 { name="piecepackr"; version="1.12.0"; sha256="0w4dgxkvi339lxj37hmaa5pwb3a8smk27drdidrg36rwjbkkai79"; depends=[gridGeometry grImport2 jpeg png purrr R6 rlang stringr tibble]; }; + piecepackr = derive2 { name="piecepackr"; version="1.12.2"; sha256="0ky3nib84za7v27acpq5f5x8vpc6hsp5an7fid1vdzc6i1467mvr"; depends=[gridGeometry grImport2 jpeg png purrr R6 rlang stringr tibble]; }; piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.1.2"; sha256="1qxwc1drx26p4cgymrfjmg5i7ypl7gddv40virkpmc0qaag9pq36"; depends=[car DiagrammeR emmeans igraph lme4 MASS multcomp nlme]; }; piggyback = derive2 { name="piggyback"; version="0.1.4"; sha256="04d5rm6m94xiw70wh2wvdsd9zixkazsjl612afg5b0izw5snv7cy"; depends=[cli fs gh glue httr jsonlite lubridate memoise]; }; pillar = derive2 { name="pillar"; version="1.8.1"; sha256="1v47dm2v4nlswd1gmgcx5c7yrgn1ksdfr9lqkc63jf2nkv6af1ig"; depends=[cli fansi glue lifecycle rlang utf8 vctrs]; }; @@ -14034,7 +14118,6 @@ in with self; { pipenostics = derive2 { name="pipenostics"; version="0.1.7"; sha256="0c0qnh8kjgnmsg8arj7jhpdyjcdm58j9lzwi0yvl7ygk4k2klgv3"; depends=[checkmate]; }; pirate = derive2 { name="pirate"; version="1.0.0"; sha256="160mmyqdwbc4g7n7q9i4xcqp6h9bcpcz7vavsgdcpvs2mjfhfpjx"; depends=[ggplot2 MASS plyr Rcpp RcppArmadillo]; }; piratings = derive2 { name="piratings"; version="0.1.9"; sha256="0krrcf2bwicdf9fn657vkcjg5zliwi82hw3xmaqi46mdix8896gh"; depends=[ggplot2]; }; - pirouette = derive2 { name="pirouette"; version="1.6.5"; sha256="0fw6hbpywmk1mqfxn480sh403afrmm8shlzcbwx32pjri9ajrx1q"; depends=[ape babette beastier beautier DDD forcats magrittr mauricer mcbette nodeSub phangorn phytools plyr pryr readr stringr TESS tibble tidyr tracerer xtable]; }; pisaRT = derive2 { name="pisaRT"; version="2.0.1"; sha256="0g4z4ixg7bsig1rjhsymncmzpl135r6mr3pqlb60gmz11851bw9w"; depends=[]; }; pitchRx = derive2 { name="pitchRx"; version="1.8.2"; sha256="0lg0xab40r8wzrww986l5q9jkg1m83g4bhsbh0kr7f2rv90av662"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; }; piton = derive2 { name="piton"; version="1.0.0"; sha256="1krf6zi238m275nxjlpyayv8y2drbgs2kg19dpkqm0lmlz5y5ar8"; depends=[Rcpp]; }; @@ -14050,7 +14133,7 @@ in with self; { pixmap = derive2 { name="pixmap"; version="0.4-12"; sha256="1v1a1adsgh5jlvvi98j4nhb1h681s97ip76zdrga12rlsjaahfw9"; depends=[]; }; pkdata = derive2 { name="pkdata"; version="0.1.0"; sha256="1kmcalidw2zidd6i8ds0k057b3187by2k8z6764va43d5garbbcv"; depends=[lubridate]; }; pkgKitten = derive2 { name="pkgKitten"; version="0.2.2"; sha256="0rappcycpkdfdivzl6nn3jq1f42r9jqqmkb33asvhmpjs35fyc3s"; depends=[]; }; - pkgbuild = derive2 { name="pkgbuild"; version="1.3.1"; sha256="0j6v5nbp8kg1m3j999gd1qsbdmqcqm1mf28ngmm177miwv8q4skw"; depends=[callr cli crayon desc prettyunits R6 rprojroot withr]; }; + pkgbuild = derive2 { name="pkgbuild"; version="1.4.0"; sha256="1mjyln5njbvi0k97w8az2v5klmas6pqiz68mlylfll4nr503qzrm"; depends=[callr cli crayon desc prettyunits processx R6 rprojroot withr]; }; pkgcache = derive2 { name="pkgcache"; version="2.0.3"; sha256="0a50gnk68gdzmpd26qv3nsfc94gg6wyf2k3dacls1p8m1zbazpl0"; depends=[callr cli curl filelock jsonlite prettyunits processx R6 rappdirs]; }; pkgcond = derive2 { name="pkgcond"; version="0.1.1"; sha256="03a4blq3niw1mljzylamvmr3l43czqlww4i6n7zb0dlym9x8gs1w"; depends=[assertthat]; }; pkgconfig = derive2 { name="pkgconfig"; version="2.0.3"; sha256="0l1qph8zyi2sic3k2qcd7vlfl7rzfh1q7z7zvjkl5f7y1x2fy3rk"; depends=[]; }; @@ -14060,9 +14143,8 @@ in with self; { pkgfilecache = derive2 { name="pkgfilecache"; version="0.1.4"; sha256="1fr650yb4wjz6flq4f8p2p5bck5q4kkrhlhlwjn832payq9p4zsp"; depends=[downloader rappdirs]; }; pkggraph = derive2 { name="pkggraph"; version="0.2.3"; sha256="1isiywgm20rypc5qr03p0k7lis76zzd96x5ncbvia644d2n13brm"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; }; pkglite = derive2 { name="pkglite"; version="0.2.1"; sha256="0kc2h9d0kszvgc5bhzar4h4y604msmdmcc1agvn9irffm54x848d"; depends=[crayon magrittr remotes]; }; - pkgload = derive2 { name="pkgload"; version="1.3.1"; sha256="16k7n5hrwkzdwm54qyf5p6d1v5rf6vq688x48iylw6bygc6vgf66"; depends=[cli crayon desc fs glue rlang rprojroot withr]; }; - pkgmaker = derive2 { name="pkgmaker"; version="0.32.2"; sha256="14ggsd24n5g5rvn0wl4w90ipxzmywqikh28llj89q6kpxwnv4iff"; depends=[assertthat codetools digest registry stringr withr xtable]; }; - pkgndep = derive2 { name="pkgndep"; version="1.2.0"; sha256="17l9xpv7k3v4gy163cma3i1z87y10gxkw0a6w0b63djgjb3h0nhg"; depends=[BiocManager BiocVersion brew ComplexHeatmap GetoptLong GlobalOptions hash]; }; + pkgload = derive2 { name="pkgload"; version="1.3.2"; sha256="0bvbnj98b1yaiksdmfi017g2w3229a5pcsnpjamzrvpy5c1rml9m"; depends=[cli crayon desc fs glue rlang rprojroot withr]; }; + pkgndep = derive2 { name="pkgndep"; version="1.2.1"; sha256="1d2h1rgr803aw3n43iaacvqdv6b9ng97bwwsmrqc4rdyn0v532i7"; depends=[BiocManager BiocVersion brew ComplexHeatmap GetoptLong GlobalOptions hash]; }; pkgnet = derive2 { name="pkgnet"; version="0.4.2"; sha256="0y1b5psn680agsnyiy8yr5m5pzb1y6wsa7gms43nwgj6jjmmvgvv"; depends=[assertthat covr data_table DT futile_logger glue igraph knitr magrittr R6 rlang rmarkdown visNetwork]; }; pkgnews = derive2 { name="pkgnews"; version="0.0.2"; sha256="0kqyy1fchpcyclxh6gly23pkfcf5b3hpsq1bhj4ykzbl4bc002h2"; depends=[]; }; pkgsearch = derive2 { name="pkgsearch"; version="3.1.2"; sha256="0j0rckhv1lcwlc05ng637n1jv9yyxb6iws91i3mz9qnl5wis8061"; depends=[curl jsonlite parsedate prettyunits]; }; @@ -14078,9 +14160,11 @@ in with self; { plainview = derive2 { name="plainview"; version="0.2.0"; sha256="06aghs1i0nbyyx5ll8fwzlz6dqhvckr63xvx8xv52i8m7x6rml4y"; depends=[htmltools htmlwidgets lattice png raster viridisLite]; }; plan = derive2 { name="plan"; version="0.4-4"; sha256="0xpl1hrq0cs1bi8wn1bb1d4lmb6g1dfzp8wlwa9g2bc12yw5q8hg"; depends=[]; }; planets = derive2 { name="planets"; version="0.1.0"; sha256="01zh7lgaykr9p186yy0vksn2pmc69b3xxh78w7z6wclvqjb7zh1p"; depends=[]; }; + planningML = derive2 { name="planningML"; version="1.0.0"; sha256="1qndw6jxk2jgliw996h2qkqqdd22ycc8kvs8z0jmk43dmiyjqzfx"; depends=[caret dplyr lubridate Matrix MESS pROC tidyverse]; }; plantecophys = derive2 { name="plantecophys"; version="1.4-6"; sha256="1qf9a38n8nvvz8dvqra9mdsmkbkhxymjrin0wfis8g1ndf1f406c"; depends=[]; }; plantecowrap = derive2 { name="plantecowrap"; version="1.0.4"; sha256="0syxf63xy5whzw03ys5cxyw7689mr7ihgmqddv53jb8rlbwm84p8"; depends=[ggplot2 minpack_lm plantecophys tidyr]; }; plaqr = derive2 { name="plaqr"; version="2.0"; sha256="15pdb57123m3cahvcsyrrvxjwxvs2f389yxip91gjxn68jf6cx1l"; depends=[quantreg]; }; + plasma = derive2 { name="plasma"; version="0.9.21"; sha256="09in7kh2pfz0mkz0mic3nk4vxh7f9hmlv5xyv502d2q3cc5s26lm"; depends=[beanplot oompaBase pls plsRcox Polychrome survival viridisLite]; }; plater = derive2 { name="plater"; version="1.0.4"; sha256="0k2ha44ydcf180y44cgxd1haq55k96df39lahs6fji04imh75fii"; depends=[dplyr rlang]; }; platetools = derive2 { name="platetools"; version="0.1.5"; sha256="0qzq7r8ff27cwmxw649jvk9irm6ny2mz4ylmrpzdkahkskfb5arj"; depends=[ggplot2 RColorBrewer]; }; platowork = derive2 { name="platowork"; version="0.0.1"; sha256="09ps20lqli50nhhd3368fwf8cjsbshn428fbbbckbxnynxk5cwsy"; depends=[]; }; @@ -14098,7 +14182,7 @@ in with self; { plinkQC = derive2 { name="plinkQC"; version="0.3.4"; sha256="0l5gf7wf33fhzby0n2qzph02v7an2gj2dji1i129hxsxqnynx7dy"; depends=[cowplot data_table dplyr ggforce ggplot2 ggrepel igraph optparse R_utils sys UpSetR]; }; plm = derive2 { name="plm"; version="2.6-2"; sha256="0r0yhr00hfjh5nksp4pbkifjyf6jbxcq8hwjqlbdmvkz51fi4ayz"; depends=[bdsmatrix collapse Formula lattice lmtest MASS maxLik nlme Rdpack sandwich zoo]; }; pln = derive2 { name="pln"; version="0.2-2"; sha256="03jjmfr1dwz6p652y917g9rv2alyam9ws6xh9ig02d3w78b0rsv9"; depends=[]; }; - plnr = derive2 { name="plnr"; version="2022.6.8"; sha256="0nm6zzahl3chgj1sj07izdxb8gprjca7nr87wxcjkzh19xrix7dd"; depends=[data_table digest foreach fs glue purrr R6 usethis uuid]; }; + plnr = derive2 { name="plnr"; version="2022.11.23"; sha256="1qi24zpvclamxxfppgll7rcmq7fysxf8chk6wlkwkzmjl5c3cs4n"; depends=[data_table digest foreach fs glue purrr R6 usethis uuid]; }; plogr = derive2 { name="plogr"; version="0.2.0"; sha256="0a8dhzlna79ggyhfr0nncgh15a9n6r0dsz664pz0ah323wpblqqf"; depends=[]; }; plot_matrix = derive2 { name="plot.matrix"; version="1.6.2"; sha256="1fsgzjcllrdlf55ww7dhyx1iaa59y2a6f1b1591j8m8in1fh7n6n"; depends=[]; }; plot3D = derive2 { name="plot3D"; version="1.4"; sha256="1h59zlsyzbjylaziwavppl9bjmnba4iiq34772y3dys6fqclajnh"; depends=[misc3d]; }; @@ -14118,9 +14202,9 @@ in with self; { plotfunctions = derive2 { name="plotfunctions"; version="1.4"; sha256="0asmxw8283fpvl83h478j5nyg59xqifqaa8f2f6l199gvvswhhg2"; depends=[]; }; plothelper = derive2 { name="plothelper"; version="0.1.9"; sha256="1ibznjqs4gpbq1vx79gg0fkm842xfqgpmmgqji2m6s712j3bdn5k"; depends=[farver ggfittext ggplot2 gridExtra magick plyr scales]; }; plotluck = derive2 { name="plotluck"; version="1.1.1"; sha256="16wqj4xfa8b7kal6v8mp2zlhwf9l3y6y5n44qbpvy652gzb2rw2z"; depends=[ggplot2 hexbin Hmisc plyr quantreg RColorBrewer scales]; }; - plotly = derive2 { name="plotly"; version="4.10.0"; sha256="16iqj7sv49mva6siibsci7iijsbnk7pqvfns9al0k35w9mjmr6dx"; depends=[base64enc crosstalk data_table digest dplyr ggplot2 htmltools htmlwidgets httr jsonlite lazyeval magrittr promises purrr RColorBrewer rlang scales tibble tidyr vctrs viridisLite]; }; + plotly = derive2 { name="plotly"; version="4.10.1"; sha256="0yin1kid3a69fcwrrajwzqbhx4xc81x8p8m0yfh1fkm2rfhj22dc"; depends=[base64enc crosstalk data_table digest dplyr ggplot2 htmltools htmlwidgets httr jsonlite lazyeval magrittr promises purrr RColorBrewer rlang scales tibble tidyr vctrs viridisLite]; }; plotlyGeoAssets = derive2 { name="plotlyGeoAssets"; version="0.0.2"; sha256="1c6i4dz5qmym1pcddgffcqgb76jz84252xldprg2caylrqvzv6b7"; depends=[]; }; - plotmm = derive2 { name="plotmm"; version="0.1.0"; sha256="01mi9znl471myq1yhfr8kdxpy0l67wgb3fid8gf2rzj5ph72b8hp"; depends=[amerika dplyr ggplot2 patchwork wesanderson]; }; + plotmm = derive2 { name="plotmm"; version="0.1.1"; sha256="0ad8bkfbwrcv447wgygsh1akzc7v8mxgfw2ywb5024jy39zbj56b"; depends=[amerika ggplot2 wesanderson]; }; plotmo = derive2 { name="plotmo"; version="3.6.2"; sha256="0g1mznijbi1ggn4pk6sqxqjqlrznfcg57l6p2672vcaqqn73mqyd"; depends=[Formula plotrix TeachingDemos]; }; plotpc = derive2 { name="plotpc"; version="1.0.4"; sha256="1sf7n7mfyaijldm24bc8r8pfm8pp9cyaja7am14z2wpj2j9f9vyq"; depends=[]; }; plotprotein = derive2 { name="plotprotein"; version="1.0"; sha256="14kfb4xxpfp8klz31kb7cpc39636ax2cx2483vqqkciccb28f0ks"; depends=[ade4 plotrix plyr seqinr XML]; }; @@ -14131,10 +14215,10 @@ in with self; { plpoisson = derive2 { name="plpoisson"; version="0.3.0"; sha256="15g5z07m0rf4hm6nynrb3bmsiakg7j790lsy30ksxswxrzwb9a1k"; depends=[]; }; pls = derive2 { name="pls"; version="2.8-1"; sha256="137jg3x7aqwyki29i4kzp8d6imn17nq6wzzfjw5q19pixvmpybp2"; depends=[]; }; plsRbeta = derive2 { name="plsRbeta"; version="0.2.9"; sha256="1r2vnssavd9921ll7a023asbzvnjr8ax7ilb861f9rkx2fxl8z0j"; depends=[betareg boot Formula MASS mvtnorm plsRglm]; }; - plsRcox = derive2 { name="plsRcox"; version="1.7.6"; sha256="0dg4vpy15z4x61qyqc9nvqa1788g6phlrzjrk1xhns5x2h8cicma"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; + plsRcox = derive2 { name="plsRcox"; version="1.7.7"; sha256="1fkbynjlwi070yshnqcmw2f331yzr61f1mvm5dbw3iwg9ldhcbwr"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; plsRglm = derive2 { name="plsRglm"; version="1.5.0"; sha256="10zbl8y61jdsbhz8dqfd4r7dhzkkr0a02v94d3pnk2v89n5nf7ls"; depends=[bipartite boot car MASS mvtnorm]; }; plsVarSel = derive2 { name="plsVarSel"; version="0.9.9"; sha256="10hjyngz6yq957gk7b62158fd08ajfb0mps55y2216f7886x9ljb"; depends=[bdsmatrix genalg MASS MSQC mvtnorm pls praznik progress]; }; - plsdof = derive2 { name="plsdof"; version="0.3-0"; sha256="1axi8bailiq9mjs0dvasy895b7c62114hdsaygxwz4zymfa6a3ny"; depends=[MASS]; }; + plsdof = derive2 { name="plsdof"; version="0.3-2"; sha256="1bqk98f9zyi4hvna1sfx4fwiivndlwanjaphlqa03bg6bghcj60p"; depends=[MASS]; }; plsgenomics = derive2 { name="plsgenomics"; version="1.5-2"; sha256="1pvb50nv6jc99bm2hsxpzazg26y49yi24wwwim5xcjj6j1szbip4"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; }; plsmod = derive2 { name="plsmod"; version="1.0.0"; sha256="1fyv2v3jmf1hdii9z477ijy5d9gvpc3jg9cyl9lbplgc18l2pd2b"; depends=[dplyr generics magrittr mixOmics parsnip purrr rlang tibble tidyr]; }; plsmselect = derive2 { name="plsmselect"; version="0.2.0"; sha256="044mwdqv5vw0apmx3yhn6xkdmw6baalvb8c6hhmawcs279kwi1m9"; depends=[dplyr glmnet mgcv survival]; }; @@ -14148,7 +14232,7 @@ in with self; { pluralize = derive2 { name="pluralize"; version="0.2.0"; sha256="1s3jp41j8c03qb5zisj6m12ky7cz3n71d6p5apz0r0yn35inrhah"; depends=[V8]; }; pluscode = derive2 { name="pluscode"; version="0.1.0"; sha256="1j9yr5j6mb346a5dn7v9bsppgnxdj1ryimlla4a08rv7bjyq5i6q"; depends=[httr jsonlite]; }; plusser = derive2 { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; }; - plyr = derive2 { name="plyr"; version="1.8.7"; sha256="0zz88q055c38b9xqzfg1mwm7ikxzlyx3pnk16sfa8dbh2pqxm7vx"; depends=[Rcpp]; }; + plyr = derive2 { name="plyr"; version="1.8.8"; sha256="030706kwgqa2s5jd93ck271iqb0pj3fshrj9frg4wgp1pfs12cm7"; depends=[Rcpp]; }; pmc = derive2 { name="pmc"; version="1.0.4"; sha256="0y2h6r8dx721n0wwbc3i5j50j694kxanc4vxwr07939145bvpfac"; depends=[dplyr geiger ggplot2 ouch tidyr]; }; pmclust = derive2 { name="pmclust"; version="0.2-1"; sha256="0wldf0bj406qxmlc7hsbamiak7qcwf8ixng9dfkswh511m3p05jd"; depends=[MASS pbdMPI]; }; pmd = derive2 { name="pmd"; version="0.2.1"; sha256="14xra1d6qx6gxnpiwfsxz200qhmm7s4zy2j8h5kwbvbpnykdyr5c"; depends=[data_table enviGCMS igraph RColorBrewer]; }; @@ -14158,14 +14242,14 @@ in with self; { pmledecon = derive2 { name="pmledecon"; version="0.2.1"; sha256="10yry425y2ghcnp3mrjharf4blcqvwnxsm7kz90mzfq91qg4q5lv"; depends=[rmutil splitstackshape]; }; pmml = derive2 { name="pmml"; version="2.5.2"; sha256="1faad5yqyh6dx40056w74vlyw4wxjgh41jv8b2vf2gh26laf22kk"; depends=[stringr XML]; }; pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.3"; sha256="0315kb5x04pidpzr04yaxyynp0mz4ilzp7vkspq4agjkds5hyc88"; depends=[]; }; - pmparser = derive2 { name="pmparser"; version="1.0.10"; sha256="0p8fd4xrfvn27739m1rsal8sgddycbjzla5i2v0jkrkjr76sakl3"; depends=[curl data_table DBI foreach glue iterators jsonlite R_utils RCurl withr xml2]; }; + pmparser = derive2 { name="pmparser"; version="1.0.13"; sha256="1c58kdy25hjd0glw6hym082jbp8jjvxdn6j3kg859w4pf6kssm57"; depends=[curl data_table DBI foreach glue iterators jsonlite R_utils RCurl withr xml2]; }; pmr = derive2 { name="pmr"; version="1.2.5.1"; sha256="14m3y1sywnd77gyifz2nv5q7h85f81wl5c8glvc100zgljvbgwvc"; depends=[]; }; pmsampsize = derive2 { name="pmsampsize"; version="1.1.2"; sha256="0msbkjpzssgkc4ndx9s1rb8mgg07bx7fdlq48j5s8ak8n1gwdkyk"; depends=[]; }; pmultinom = derive2 { name="pmultinom"; version="1.0.0"; sha256="0p2amb3y4jl24r21fii1qpmdbn5pfgywrx8k7x1jxpg49rk7k0rp"; depends=[fftw]; }; pmwg = derive2 { name="pmwg"; version="0.2.0"; sha256="1f1r66ml24ys7nx5558c189a4gcaqkr16y87dmi4ravick9l5yfi"; depends=[checkmate coda condMVNorm MASS MCMCpack mvtnorm]; }; pmxTools = derive2 { name="pmxTools"; version="1.2.3"; sha256="09hnkzxwbj025an5kn91sw1sanxlcnmsi9wz8545fkcna78384zk"; depends=[chron data_tree DiagrammeR dplyr ggdist gghalves ggplot2 ggrepel gridExtra magrittr MASS stringr tibble xml2]; }; pmxpartab = derive2 { name="pmxpartab"; version="0.5.0"; sha256="13r4xy0jvxdwjz3gic67fzgq87v18vs7df1ggd3hq89h6f28fxar"; depends=[data_table htmltools knitr table1]; }; - png = derive2 { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; }; + png = derive2 { name="png"; version="0.1-8"; sha256="077nca3x0l6mq2g6izknzcn994bqs3nfqk7wscrjbfk2dnxzldjs"; depends=[]; }; poLCA = derive2 { name="poLCA"; version="1.6.0.1"; sha256="05kbkyrds430v729hi56q48yfwfi5m1f371gpb4h417z5fj6137d"; depends=[MASS scatterplot3d]; }; pocketapi = derive2 { name="pocketapi"; version="0.1"; sha256="0n4fyx4ldm14zy3pz7gygwhahi3p25misvxlmy8l9kqqr51fg26a"; depends=[dplyr glue httr jsonlite magrittr purrr tibble usethis]; }; pocrm = derive2 { name="pocrm"; version="0.13"; sha256="0d4iggxjbl95fz872q9v1wr30nga39sdd5dvwa2zrrm73ak81cz3"; depends=[dfcrm nnet]; }; @@ -14190,20 +14274,21 @@ in with self; { poistweedie = derive2 { name="poistweedie"; version="1.0.1"; sha256="0236cz8fn3la7df8mk1la8hmr0zzjc1majnq8p0c8grma833j6kp"; depends=[]; }; poker = derive2 { name="poker"; version="0.8.8"; sha256="14ik77440z22k4kwq0p1fn7adzi0p8mh8j8hd7ayinvrab4b5r85"; depends=[]; }; polaroid = derive2 { name="polaroid"; version="0.0.1"; sha256="0m3jbiz4n7mgbbdkd28m6dqsclyjcgshpxd6ws8df7zchx7fch07"; depends=[argonDash argonR colourpicker ggplot2 hexSticker png shiny shinyWidgets]; }; - policytree = derive2 { name="policytree"; version="1.2.0"; sha256="0ixw6b1zy4h51dzhmrfsghnqxm3mw221v5armsxnc88xpw2rac93"; depends=[BH grf Rcpp]; }; + policytree = derive2 { name="policytree"; version="1.2.1"; sha256="1a0rfpn7dd8qsgaz5gfxpip7i897j8lmb86sjmpdafdyw5p3fl8m"; depends=[BH grf Rcpp]; }; polimetrics = derive2 { name="polimetrics"; version="1.2.1.14"; sha256="0zzqzcfmvb6a9lav5sdgzhx4637r068q3kyjqk1ykdjg2d7s7lrv"; depends=[car dplyr formula_tools ggplot2 gplots MASS purrr rlang rstatix stringr tidyverse]; }; poliscidata = derive2 { name="poliscidata"; version="2.3.0"; sha256="1ywfhksc6gcc2xk5lp6s8nn4wib92sv7p3wq92dzabf75q6mscix"; depends=[abind car descr gplots Hmisc plotrix plyr survey weights xtable]; }; polished = derive2 { name="polished"; version="0.7.0"; sha256="0dvm76q101a9knh8kl5xfm7hpnmyggxkjzx3z749wmbc0p0h7jxl"; depends=[automagic digest dplyr DT htmltools httr jose jsonlite lubridate otp purrr rlang rmarkdown shiny shinycssloaders shinydashboard shinyFeedback shinyjs shinyWidgets stringr tibble tidyr uuid yaml]; }; polite = derive2 { name="polite"; version="0.1.2"; sha256="0ms4814aszfq5b8nlqsvnvnwpzpsqhsxr4z78hl6aknl0201lm94"; depends=[httr magrittr memoise ratelimitr robotstxt rvest usethis]; }; politeness = derive2 { name="politeness"; version="0.8.7"; sha256="05c606cra65cizxi266x2ka7bh911ipdy62sdbg47zi90nmcpnci"; depends=[data_table ggplot2 glmnet quanteda spacyr stringi stringr textir tm]; }; + polle = derive2 { name="polle"; version="1.0"; sha256="11585rm5pw41nbwsgm5zx0vlnrj25fjg44ps68jjyvdzs8191fhl"; depends=[data_table DynTxRegime future_apply lava policytree SuperLearner survival targeted]; }; pollen = derive2 { name="pollen"; version="0.82.0"; sha256="0vmggbvacpbdz4zvn3cinip1b0ac44vgbydmsk6698hwgx9iwmfp"; depends=[dplyr lubridate purrr]; }; pollimetry = derive2 { name="pollimetry"; version="1.0.1"; sha256="09zmcwlgzl4fnkdg2m424ibv3izzrm595c7pi4mc3bd1g8sa2ypn"; depends=[brms repmis]; }; pollster = derive2 { name="pollster"; version="0.1.4"; sha256="1nvkskqyxng7r4c9z59s5mg9gk8rvd70bd5cfr3wnhps713sripi"; depends=[dplyr forcats labelled rlang stringr tidyr]; }; polmineR = derive2 { name="polmineR"; version="0.8.7"; sha256="0b4m7xywvk3g8x9m3xb3nivbh0x6hvan51j444i2q2la6myrnm62"; depends=[data_table DT fs jsonlite knitr lifecycle magrittr Matrix pbapply RcppCWB rlang slam stringi tm xml2]; }; - polspline = derive2 { name="polspline"; version="1.1.20"; sha256="1dd1jwiaglkkhajzvqfkd1x5r3wzjlk5ww0yxzmns0s1kr74i4k9"; depends=[]; }; - polyCub = derive2 { name="polyCub"; version="0.8.0"; sha256="1f63ikiz988hdihvgd5f2p897qfgv54ysgp2h8avmlc4cj6hgkgl"; depends=[sp]; }; + polspline = derive2 { name="polspline"; version="1.1.22"; sha256="0ys5sxr5q55ip49dsc3kbgcr3bn9dj5bblmshwm4jz8d0a7ikwmj"; depends=[]; }; + polyCub = derive2 { name="polyCub"; version="0.8.1"; sha256="09a4n69f9m5y57wkxlhwn5xfhzpqrcyzfc6n5zywn5jkj5h7wijl"; depends=[sp]; }; polyMatrix = derive2 { name="polyMatrix"; version="0.9.16"; sha256="13amrjl0nsyz6d9c9xxgnlkhdiicy8rx27ds5k47r8x48386vz14"; depends=[Matrix polynom]; }; - polyRAD = derive2 { name="polyRAD"; version="1.6"; sha256="1xvhjzryf35vrnf6iz82g14vbmbbm4g88il02ss5pmvsgxq70x5n"; depends=[fastmatch pcaMethods Rcpp stringi]; }; + polyRAD = derive2 { name="polyRAD"; version="2.0.0"; sha256="12qlws0d6s94rand1a7azd7yv22qzij1aqmhrvw4az0y7jy2wka4"; depends=[fastmatch pcaMethods Rcpp stringi]; }; polySegratio = derive2 { name="polySegratio"; version="0.2-5"; sha256="0djw49mbhd7x6jr0f5qkb9akw3fw3ax4w9xv8iwa5f65q5gbxpdf"; depends=[gdata]; }; polySegratioMM = derive2 { name="polySegratioMM"; version="0.6-4"; sha256="162xj52566kaxgfk7c14170xx07isyjmqb9skvhrdg7sz20lc3l1"; depends=[coda gtools lattice polySegratio]; }; polyaAeppli = derive2 { name="polyaAeppli"; version="2.0.2"; sha256="1rn1bryxxzsgi85kw4glmk10z61pqyxj79ngdl81b67vrw23fpxw"; depends=[]; }; @@ -14224,9 +14309,9 @@ in with self; { pomdp = derive2 { name="pomdp"; version="1.0.3"; sha256="1k0ysy0br5rff7jzz05gfwliqn668jd41cjp2mjs27qzgaazip7r"; depends=[igraph pomdpSolve]; }; pomdpSolve = derive2 { name="pomdpSolve"; version="1.0.1"; sha256="0fkh2xamhgrh743b06mi6m7fg3bw989hxmwkf00bq6y7dr9c168b"; depends=[]; }; pomodoro = derive2 { name="pomodoro"; version="3.8.0"; sha256="1y7a6097jlrrgqkxhb43n5nahf4m814inhmkm1495w0k5q1zmraf"; depends=[caret gbm ipred pROC randomForest tibble]; }; - pomp = derive2 { name="pomp"; version="4.3"; sha256="0581b1q2scmr57kr83kb3k1dp4bz3jny6h5v6lm7mxsychca4dl7"; depends=[coda deSolve digest magrittr mvtnorm plyr reshape2]; }; + pomp = derive2 { name="pomp"; version="4.4"; sha256="11c0dzs34ks1vp0gdbzg6ls5q4z3gyd9m2kbdi9nrspammg0h138"; depends=[coda deSolve digest magrittr mvtnorm plyr reshape2]; }; pompom = derive2 { name="pompom"; version="0.2.1"; sha256="09jy4lrb2p71yk604ndfhqfz6znlc3bq72k42f0d1i1a8g3by8h6"; depends=[ggplot2 lavaan qgraph reshape2]; }; - pompp = derive2 { name="pompp"; version="0.1.2"; sha256="05zy47zaifwj1qvvgxpvari26ac354axijqbx5522mbl27x3c6sf"; depends=[coda geoR Rcpp RcppEigen RcppProgress]; }; + pompp = derive2 { name="pompp"; version="0.1.3"; sha256="0svlzhsm1kfwgjpx2cas63jm8v5b9cxlksipv758vxlnc3jiarvk"; depends=[coda geoR Rcpp RcppEigen RcppProgress]; }; pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; }; pool = derive2 { name="pool"; version="0.1.6"; sha256="1qfraam1rc2r4mn7yhhfv8lhhc4dzgq0v1y97n4h2z3mgxn5zgnd"; depends=[DBI later R6]; }; poolVIM = derive2 { name="poolVIM"; version="1.0.0"; sha256="19yw6pp5l3jmla4wjbvpjq132f645yks49pzsdv123f3qfr8f0m6"; depends=[EmpiricalBrownsMethod Hmisc ranger]; }; @@ -14255,7 +14340,7 @@ in with self; { populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.3"; sha256="0p73ddv3j1s1vs4j3axnsf39n626qjv0w1qlq9p7km4s6729bhgv"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; }; porridge = derive2 { name="porridge"; version="0.3.1"; sha256="0m0aa7cqfkd45csgs0lapf72adjmf0xaii1klnk3kd4kxbclx8a6"; depends=[MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; port4me = derive2 { name="port4me"; version="0.5.0"; sha256="0fs279qmxn0hz6w3app8dfcdhshymqrkgj53il4dzlw27ascw105"; depends=[]; }; - portalr = derive2 { name="portalr"; version="0.3.10"; sha256="0bgk25j528p972hxcymvvk1x6dhir5gb9y15rlhwxax9bh52dgiq"; depends=[clipr clisymbols crayon dplyr forecast httr lubridate lunar magrittr rlang tidyr tidyselect zoo]; }; + portalr = derive2 { name="portalr"; version="0.3.11"; sha256="0li3simzryaakb96z6k64d2fzz1r5wpyzy9ib04xq8dvsfypb9fx"; depends=[clipr clisymbols crayon dplyr forecast httr lubridate lunar magrittr rlang tidyr tidyselect zoo]; }; portfolio = derive2 { name="portfolio"; version="0.5-2"; sha256="13w8gyaphg0qspjl6d0jh0jf3wvz4agy8vzkriba0k59qhdbi52f"; depends=[lattice nlme]; }; portfolio_optimization = derive2 { name="portfolio.optimization"; version="1.0-0"; sha256="1rdhwffsjc1pa1qq7rqy6dwk8yrcblkmijz94p2w7sf2v4jmwxxr"; depends=[magrittr MASS modopt_matlab xts]; }; portfolioBacktest = derive2 { name="portfolioBacktest"; version="0.4.1"; sha256="1qf7bbf3frivp0q55h3fj9ki2igaa6djpg3zv1x6hh53nl25dvbb"; depends=[digest evaluate ggplot2 pbapply PerformanceAnalytics quadprog quantmod R_utils rlang xts zoo]; }; @@ -14265,6 +14350,7 @@ in with self; { postGIStools = derive2 { name="postGIStools"; version="0.2.4"; sha256="04d6iqnk7j2lgv1h5c94j6y89jk75pmv26sxa51s5iwkjq7rchym"; depends=[DBI jsonlite rgdal rgeos RPostgreSQL sp stringr]; }; postHoc = derive2 { name="postHoc"; version="0.1.3"; sha256="1l7r9md9iyav5vvjykpsnqv9whspzcmnppfpqm6qy5s5vk6b8zfd"; depends=[igraph multcomp]; }; postcards = derive2 { name="postcards"; version="0.2.3"; sha256="0kc8nbrqw5h14qw47rxl20yz9q0s8gk2g3lg7kcgsx7f1q514qsw"; depends=[rmarkdown rstudioapi]; }; + postdoc = derive2 { name="postdoc"; version="1.1.0"; sha256="02j7jsjmyd643bimhvvaaak7nx6w99shas8l588ny2abygxb915m"; depends=[jsonlite katex prismjs xml2]; }; posterdown = derive2 { name="posterdown"; version="1.0"; sha256="13plrrnylw3yldm0md1gr5drccfjk9f2wwlhz6lrmb3px7w5nqs0"; depends=[pagedown rmarkdown yaml]; }; posterior = derive2 { name="posterior"; version="1.3.1"; sha256="0yjdjdr4ifssnml1niqyxs6jsqpci8rx8va0pinyhjx2j017h03h"; depends=[abind checkmate distributional matrixStats pillar rlang tensorA tibble vctrs]; }; postinfectious = derive2 { name="postinfectious"; version="0.1.0"; sha256="1v327zxxiwc1cdksk6s39lkkgck5dxg169pp3jiqmm7xs35dcl6y"; depends=[]; }; @@ -14289,6 +14375,7 @@ in with self; { powerSurvEpi = derive2 { name="powerSurvEpi"; version="0.1.3"; sha256="1p1fw4jq4rxc273hmycxf4bkqm6zmfw0jdy2s65jy10q37r53ial"; depends=[pracma survival]; }; powerbiR = derive2 { name="powerbiR"; version="0.1.0"; sha256="0b7409j55m5nnp5nm9sgij635xpm39qkm3hajg3x0x8zxvfczfz6"; depends=[AzureAuth data_table httr jsonlite]; }; powerbydesign = derive2 { name="powerbydesign"; version="1.0.5"; sha256="006m127rc49bshgljd5d3ii6sfx24ndn2690ixj0vnqm2dp3zjnw"; depends=[gdata ggplot2 lme4 MASS plyr reshape2 stringr]; }; + powerjoin = derive2 { name="powerjoin"; version="0.1.0"; sha256="19b7y7aqf5159x2fi5nrx179nc673qqzkv9c8kgw85hmmjzjgnb3"; depends=[cli dplyr glue purrr rlang tibble tidyr tidyselect vctrs]; }; powerly = derive2 { name="powerly"; version="1.8.6"; sha256="0vc2wpx2b4i9vx9jvvlywq5w4dx22bn4r9fcwz123h1m09252ng8"; depends=[bootnet ggplot2 mvtnorm osqp patchwork progress qgraph quadprog R6 rlang splines2]; }; powerpkg = derive2 { name="powerpkg"; version="1.6"; sha256="18cq3zsdvzmqjp0niq0libjk4riarmiar3h6lifq54spqgrvvxh2"; depends=[]; }; powerplus = derive2 { name="powerplus"; version="3.1"; sha256="0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"; depends=[complexplus expm MASS Matrix phonTools]; }; @@ -14304,13 +14391,13 @@ in with self; { ppmHR = derive2 { name="ppmHR"; version="1.0"; sha256="1fc9rrk3ir3dq5d518ih67dvknhz1ln6668wy2mzsdndaysgm12g"; depends=[nleqslv]; }; ppmSuite = derive2 { name="ppmSuite"; version="0.2.4"; sha256="0qpd5a35x7fbdjwfr0cnx00wf0hwzlah6z3giajgcv0d7wzrvczn"; depends=[]; }; ppmf = derive2 { name="ppmf"; version="0.1.3"; sha256="0xphk27frlcr87jwjbgwf77c8bhv0nswmffj9ny2vd1b176bi9xn"; depends=[censable dplyr magrittr readr rlang stringr tibble tidyr zip]; }; - ppmlasso = derive2 { name="ppmlasso"; version="1.2"; sha256="0pdafk8f8z92v4rs0n78sj9gy80l2nr9n91y2icbchgh8fa1hi1m"; depends=[data_table lattice plyr spatstat spatstat_core spatstat_geom]; }; + ppmlasso = derive2 { name="ppmlasso"; version="1.3"; sha256="1kqqb7wxqdmymfn4hkdmqakj3n64bbg2acf671asm2civ94rmc1m"; depends=[data_table lattice plyr spatstat spatstat_explore spatstat_geom spatstat_model]; }; pps = derive2 { name="pps"; version="1.0"; sha256="0k06rkzdx07qcndqym44q6xyawdd253i3kbyqlmlavadsizp657g"; depends=[]; }; ppsbm = derive2 { name="ppsbm"; version="0.2.2"; sha256="0y4whxv14jqx7mqxj7n427vpbxb5rkwj8xvx0mj4knnwy9v437z4"; depends=[clue gtools Rfast]; }; ppseq = derive2 { name="ppseq"; version="0.2.0"; sha256="0ir5jm3cgpgcngrq334f2s66lsvhd0vxsiz5glj371slc8jxkwj6"; depends=[dplyr furrr ggplot2 patchwork plotly purrr tibble tidyr]; }; ppsr = derive2 { name="ppsr"; version="0.0.2"; sha256="1dk62b08sxp87kll8wjfby3iq9l3akiprarh8agjdv6s43c9h2sg"; depends=[ggplot2 gridExtra parsnip rpart withr]; }; pqantimalarials = derive2 { name="pqantimalarials"; version="0.2"; sha256="0azxkf1rvk9cyzr4gbp4y2vcxrxw3d4f002d5gjkvv1f4kx8faw1"; depends=[plyr RColorBrewer reshape2 shiny]; }; - pqrfe = derive2 { name="pqrfe"; version="1.0"; sha256="18jyvaxixi51x3ibw8p6bm9j3sawkkk8ddhzw5nygii6x8prkmni"; depends=[MASS Rcpp RcppArmadillo]; }; + pqrfe = derive2 { name="pqrfe"; version="1.1"; sha256="0apsrlgricjmv202yg1h3iz2715nmf05wcvyznnha0nil7cqg0qi"; depends=[MASS Rcpp RcppArmadillo]; }; prWarp = derive2 { name="prWarp"; version="1.0.0"; sha256="1rx9yby7xwa2bgqa6a1zllan6qfchgfrg2waadmwfmjhcp8qb1mj"; depends=[Morpho]; }; prabclus = derive2 { name="prabclus"; version="2.3-2"; sha256="0hg4d7y1w18jpgvw10z8833bbbcnlkwiasx0wh6iwa2pnnybq8gl"; depends=[MASS mclust]; }; pracma = derive2 { name="pracma"; version="2.4.2"; sha256="05lwx2yx7f45cr5amzbjv3b2p6ibspjxl0aglq2dga6rvxzk6l0x"; depends=[]; }; @@ -14329,12 +14416,12 @@ in with self; { precrec = derive2 { name="precrec"; version="0.12.9"; sha256="1dfz2rqx2ww2l5r40ahg0qdj3rjrwiwh427mw7j5ynhpcj21j2qm"; depends=[assertthat data_table ggplot2 gridExtra Rcpp withr]; }; predReliability = derive2 { name="predReliability"; version="0.1.0"; sha256="18s9ijg3fcg6qb0y6pnwngmv69ajm93z0xjdzkq3fp5bxk1qylyb"; depends=[cluster rpart]; }; predfairness = derive2 { name="predfairness"; version="0.1.0"; sha256="0b9d6a2rk6vw4y5hnh721gmirnm419yynbfg7arjb96558l282kd"; depends=[]; }; - predhy = derive2 { name="predhy"; version="1.2.0"; sha256="0iwlv9j0xpsl2xkvy7yb1irjg67d8xq13bzgjj8i4rqqhv12ap57"; depends=[BGLR doParallel foreach glmnet pls randomForest xgboost]; }; + predhy = derive2 { name="predhy"; version="1.2.1"; sha256="1m0c35r3h63vdimixskqviyqfblj8cxaf5b1085wb72fasanak5n"; depends=[BGLR doParallel foreach glmnet pls randomForest xgboost]; }; predict3d = derive2 { name="predict3d"; version="0.1.3.3"; sha256="1kb3jacpgzln1ddnkfzhvfpzzf9wig60lppca6iy0fvq5cm8ddr4"; depends=[dplyr ggiraphExtra ggplot2 magrittr modelr moonBook plyr prediction purrr reshape2 rgl rlang stringr TH_data tidyr]; }; predictMe = derive2 { name="predictMe"; version="0.1"; sha256="0n4sv9ahyvly17grlilybb7vwq9pzyn6mvhcn8z9cyswqa7svs49"; depends=[ggplot2 Rdpack reshape2]; }; prediction = derive2 { name="prediction"; version="0.3.14"; sha256="0awlq5lxfia6m2b91w73rksp93rbwv5gwqb36wbji4rgq41rzbrx"; depends=[data_table]; }; predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; }; - predictmeans = derive2 { name="predictmeans"; version="1.0.6"; sha256="1mg37vd5nlfvv3mx6hrdmxj0aavm9wy1j70117hp4sasvlvsccdi"; depends=[ggplot2 lme4 lmeInfo Matrix nlme pbkrtest plyr]; }; + predictmeans = derive2 { name="predictmeans"; version="1.0.8"; sha256="1w5kszqqqg4xx1zq6y4a93b00aa67riqsb1dq21xqpscvyiz5nv9"; depends=[car ggplot2 HRW lme4 lmeInfo lmerTest lmeSplines MASS Matrix nlme numDeriv pbkrtest plotly plyr splines2]; }; predictoR = derive2 { name="predictoR"; version="2.0.7"; sha256="01ixa8ahfdx2dnxsjzkrv09wzpis641d846b4pbhlykgdwz8mhqc"; depends=[colourpicker config DT echarts4r glmnet golem htmltools rlang rpart rpart_plot shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs traineR xgboost xtable]; }; predictrace = derive2 { name="predictrace"; version="2.0.0"; sha256="1bk1l9gai4hyck72h81znsm1dzqwm5wddbz0bm9g5igs6zkar2ka"; depends=[dplyr]; }; predieval = derive2 { name="predieval"; version="0.1.1"; sha256="096zfb94iixza0lfzr4p21gkcs9hl7h0d5jhbzdi3hhyz80zymrj"; depends=[ggplot2 Hmisc MASS Matching]; }; @@ -14367,7 +14454,7 @@ in with self; { prettyglm = derive2 { name="prettyglm"; version="0.1.0"; sha256="1qxfiynry2fhmdrqkn7hf2llx18gdi8an3crkx0s116yp3dlv5xl"; depends=[broom car dplyr forcats kableExtra knitr plotly stringr tibble tidycat tidyr tidyselect vip]; }; prettymapr = derive2 { name="prettymapr"; version="0.2.4"; sha256="1fg2j6qx828qrg46clrvln2004nlk22yx7wvhr8vig66nc1lm7bd"; depends=[digest httr plyr rjson]; }; prettyunits = derive2 { name="prettyunits"; version="1.1.1"; sha256="1ibmzgknw5896q2i6r59jz2izblxwgb29ivvjzx50pkd1jl9l6cs"; depends=[]; }; - prevR = derive2 { name="prevR"; version="4.0.0"; sha256="11biwj4qhynsqxgibgcgiprk5bs9ym9sja14lj6m8s43lyi6jyjb"; depends=[directlabels fields foreign ggplot2 gstat KernSmooth maptools rgdal sp]; }; + prevR = derive2 { name="prevR"; version="4.0.1"; sha256="0r70ns7qg72bva712pqw3djp0lzz8bpm00d9s3q9qm30lhgcl124"; depends=[directlabels fields foreign ggplot2 gstat KernSmooth maptools rgdal sp]; }; prevalence = derive2 { name="prevalence"; version="0.4.1"; sha256="0llxcz7bg62l6qq4xaf2xwmc2k0y2l3zw5nb6bq0a9qnp3anj8ah"; depends=[coda rjags]; }; prevederer = derive2 { name="prevederer"; version="0.0.1"; sha256="0vkx9nrlgp36xbl95lrb5sb5yivxlcw4yvbs8hgbm31kh0vbz32f"; depends=[httr]; }; previsionio = derive2 { name="previsionio"; version="11.7.0"; sha256="08hrklr3ngphdhp50lkz6ls9nn1bzdvs6xj583spsw4vm7j44yfr"; depends=[data_table futile_logger httr jsonlite magrittr Metrics plotly XML]; }; @@ -14393,6 +14480,7 @@ in with self; { prism = derive2 { name="prism"; version="0.2.0"; sha256="0gl6qmpgfdxn90aw10z4xj4ijcwj9mr0s9ahm28niinr9y89gzxk"; depends=[dplyr ggplot2 httr lubridate magrittr purrr raster readr stringr]; }; prismadiagramR = derive2 { name="prismadiagramR"; version="1.0.0"; sha256="13x3y4rv9b2d013jd6853zkq8rbxq88wlffmdnjs1rca0fnfrn4f"; depends=[DiagrammeR dplyr]; }; prismatic = derive2 { name="prismatic"; version="1.1.1"; sha256="013i0mq4n8s2zbzvfrz1vjcn2a6l98bamslkcv1a3cn70gpphja9"; depends=[farver]; }; + prismjs = derive2 { name="prismjs"; version="1.1.0"; sha256="0siga7l60d0axlnjwbl4smw28rggyxrjwzv8ypw9bhb6x1xnn8in"; depends=[V8 xml2]; }; prisonbrief = derive2 { name="prisonbrief"; version="0.1.2"; sha256="06550fnnffpcnv4q2nicrm7p573313lvnj6hkdrf7979ygrsmmfi"; depends=[dplyr httr magrittr passport rnaturalearth rnaturalearthdata rvest sf stringr tibble tidyr xml2]; }; prithulib = derive2 { name="prithulib"; version="1.0.2"; sha256="12ybksrvxzc5gjz8m38cs35b7r3kd8m0zqm2c67pqw38vq82sjxm"; depends=[]; }; prnsamplr = derive2 { name="prnsamplr"; version="0.2.1"; sha256="0q810rldj8li5pw5pka00rvkwwi2y7r8akfpqfg7c6mnyqlzlx67"; depends=[]; }; @@ -14420,23 +14508,23 @@ in with self; { profileModel = derive2 { name="profileModel"; version="0.6.1"; sha256="01m5nb8cmq0aq555pxk2a99182si65hhmn68yn9nal2j3zl2bp4i"; depends=[]; }; profileR = derive2 { name="profileR"; version="0.3-5"; sha256="0fgc7585a7194c67irafjnx8g2j6mn3qhcfn76c6dh28clp20qp9"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; profmem = derive2 { name="profmem"; version="0.6.0"; sha256="0gg6ja0ifwn9jj42rw1gnyil55sl9r2y5rjb6yjcvqwd5arajp3l"; depends=[]; }; - profoc = derive2 { name="profoc"; version="0.9.3"; sha256="0p83gvm7xhnwfmrn2fr31rz84sllws92rpmhjvxfcc6ylsp0hj0n"; depends=[abind Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; + profoc = derive2 { name="profoc"; version="0.9.4"; sha256="05dzsxf6kbx3jkw1f574brjlm1j4h1r72w8zgb2w182756qzbk3c"; depends=[abind Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; profr = derive2 { name="profr"; version="0.3.3"; sha256="00bv1q0qn46nz4zjfs0l2yfh3hk71rajlp2rrlwg442z11k79ap9"; depends=[plyr stringr]; }; proftools = derive2 { name="proftools"; version="0.99-3"; sha256="095pxyyv6k818qwcjygbz1h24k0xkqi1agns8cqh2m5g64aynd70"; depends=[]; }; profvis = derive2 { name="profvis"; version="0.3.7"; sha256="1f86m426pcf90l29hf4hkirzf8f38dihk52bxbdq2gvrrdili5s3"; depends=[htmlwidgets stringr]; }; progenyClust = derive2 { name="progenyClust"; version="1.2"; sha256="0azp5pvk316s8xbawcqwqfd80fxb4xn8hc6aq87xwksc6fhwp94l"; depends=[Hmisc]; }; progress = derive2 { name="progress"; version="1.2.2"; sha256="0dgzb362641aqm8xd88iqa8jmpdm43xs0aba0d5kk6fvapnxi95l"; depends=[crayon hms prettyunits R6]; }; progressr = derive2 { name="progressr"; version="0.11.0"; sha256="1nbc6vvsyqa1gvh1a1m4prnvng88wsa0r35i9fiwq84a6j18qrnq"; depends=[digest]; }; - proj4 = derive2 { name="proj4"; version="1.0-11"; sha256="07fil52jswbg2h807cd82m2wlm5j2fb891ifri9ms037099qdwf5"; depends=[]; }; + proj4 = derive2 { name="proj4"; version="1.0-12"; sha256="1y3n6zjc4s78pagq5f2x9sdfjg5x5nwnhq67jd06fndlsma8mssa"; depends=[]; }; projections = derive2 { name="projections"; version="0.5.4"; sha256="1c7fm2f3fx0905afw3nrbv6vv0a0awpml1rl2kaxnijjgqcxa6dg"; depends=[ggplot2 incidence]; }; projects = derive2 { name="projects"; version="2.1.3"; sha256="0ljrhswr5sfq051x0aicl9yvwakw9d9drgrmcz9d8qhgw1if0mky"; depends=[dplyr fs lubridate magrittr purrr readr rlang rstudioapi sessioninfo stringr tibble vctrs zip]; }; projmgr = derive2 { name="projmgr"; version="0.1.0"; sha256="1iysxcl6awvp7zbm04zyq4d9659fcz3sy711jnycsxhsk8hsvmc2"; depends=[gh magrittr]; }; - projpred = derive2 { name="projpred"; version="2.2.1"; sha256="1bbjrjaj6zzb1ph69x16i40fj2j6cg8vzmmw2rchsn0ygphaq9b8"; depends=[dplyr gamm4 ggplot2 lme4 loo magrittr mgcv mvtnorm Rcpp RcppArmadillo rlang rstantools]; }; + projpred = derive2 { name="projpred"; version="2.2.2"; sha256="0fycjmaqbcr3vp5708003flvi9ny4z04acgbcfly1ird0kcw9s3v"; depends=[dplyr gamm4 ggplot2 lme4 loo magrittr MASS mgcv mvtnorm Rcpp RcppArmadillo rlang rstantools]; }; prolific_api = derive2 { name="prolific.api"; version="0.5"; sha256="0lnxkap6x4x5wvayfx1lm4h646wb0wsffn7xysrcysfdsaxa817d"; depends=[data_table jsonlite]; }; prome = derive2 { name="prome"; version="1.5.6.70"; sha256="0hhrrw06jd3qsq9ch8k5cv4p510kp2xkyd8dh6l7zw056cnjmac0"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; promethee123 = derive2 { name="promethee123"; version="0.1.0"; sha256="0s1wkcrvm32dpqg9ahn10kni1xv3ll7akqz4y6yn1d36km81bf21"; depends=[cowplot ggplot2]; }; promises = derive2 { name="promises"; version="1.2.0.1"; sha256="1dy4cbqw17awh4q8m7cy3anaj0n9iynabfzflb1g94cyj0bq4fld"; depends=[later magrittr R6 Rcpp rlang]; }; - promor = derive2 { name="promor"; version="0.1.0"; sha256="1p61z7rfyxykxxzb97byiw4pjgxiqw4yam4yx2ggn2rp0vlkac6y"; depends=[caret ggplot2 ggrepel gridExtra kernlab limma missForest pcaMethods pROC reshape2 statmod VIM viridis xgboost]; }; + promor = derive2 { name="promor"; version="0.1.1"; sha256="1wn87cijc04zycfvpvpjd6d816r3bpicw9wfv38nswvrhpdds9k2"; depends=[caret ggplot2 ggrepel gridExtra kernlab limma missForest pcaMethods pROC reshape2 statmod VIM viridis xgboost]; }; promote = derive2 { name="promote"; version="1.1.1"; sha256="1cdz4xqinyzpbbgkxxd4f86n1h8zj88vp5z6w01cxd5ykyjf5411"; depends=[httr jsonlite stringr]; }; promotionImpact = derive2 { name="promotionImpact"; version="0.1.5"; sha256="18iq2r5zirddlfx20alm6qnxf9qv3ii3c9bcm789q0q18d2hyj2q"; depends=[crayon dplyr ggplot2 ggpubr KernSmooth lmtest prophet Rcpp reshape2 scales stringr strucchange]; }; prompt = derive2 { name="prompt"; version="1.0.1"; sha256="19l2vrm7qcdrf2mliniazf3mc6sz3g9v5sysf9nd01p5harqrk8k"; depends=[cli]; }; @@ -14447,7 +14535,6 @@ in with self; { propagate = derive2 { name="propagate"; version="1.0-6"; sha256="17jinz1jramlsf87i7vyn2qp82rc1dacljfaxxplrk3crhw3bhs7"; depends=[ff MASS minpack_lm Rcpp tmvtnorm]; }; properties = derive2 { name="properties"; version="0.0-9"; sha256="1zd66cg31yd53rqsc0cwxhlpfn7kvc67qdh3vyj9qib8kwxaw1zl"; depends=[]; }; prophet = derive2 { name="prophet"; version="1.0"; sha256="06mryavky9xj54ig4scqjgpx7i56nwhs53g0zqsbs9f6qxja7gll"; depends=[BH dplyr dygraphs extraDistr ggplot2 lubridate Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidyr xts]; }; - propr = derive2 { name="propr"; version="4.2.6"; sha256="16ghgzpwz6q9zlaa0pc8wqv0wpz81c75n7zwjyr1lv9y19qwlkfg"; depends=[fastcluster ggplot2 igraph Rcpp]; }; prospectr = derive2 { name="prospectr"; version="0.2.6"; sha256="1p53hcgcs2p09zhc2n7byjzrgvcgz6w7q00mlsn4kmnz7l4p7rrm"; depends=[foreach iterators lifecycle mathjaxr Rcpp RcppArmadillo]; }; protViz = derive2 { name="protViz"; version="0.7.3"; sha256="0f6jwzcqi0w37hvg3i5dlk0c3anpkqh54ibf94vaf17r8sykr4nw"; depends=[Rcpp]; }; protag = derive2 { name="protag"; version="1.0.0"; sha256="1iaw2w1d7hdvlg5vplpqc49wq08dgmm0ifvp2v0ggqb8invvdnw8"; depends=[dplyr ggplot2 RColorBrewer]; }; @@ -14470,7 +14557,7 @@ in with self; { provTraceR = derive2 { name="provTraceR"; version="1.0"; sha256="19iillyh5zw64mmr6ik4ci1n2p651xqzxa4iq5bwa70imbzyy5ip"; depends=[provParseR]; }; provViz = derive2 { name="provViz"; version="1.0.9"; sha256="0hwd9x02xcldrmmnpknsycqlb78ngdsphs7n141rcxsv167gbmcq"; depends=[]; }; provenance = derive2 { name="provenance"; version="4.0"; sha256="0ds798jjb7hcc473ca51rylnl5zpcbv02z88rvj9zs8vj22kdy6j"; depends=[IsoplotR MASS]; }; - proverbs = derive2 { name="proverbs"; version="0.1.0"; sha256="1i3aqlk4xb6zrjb7izyz7m9ys950cc6msvac8ixx74a7s57j99p1"; depends=[cli crayon httr lubridate magrittr purrr]; }; + proverbs = derive2 { name="proverbs"; version="0.2.0"; sha256="1kfc8vghrzszgvjx5pq221cw20cn990h5s7l1di5m61wx29siakc"; depends=[cli crayon httr lubridate magrittr purrr]; }; proxirr = derive2 { name="proxirr"; version="0.2"; sha256="0ffnzmd9zy43vzp0mc0ncjwfj5d7p2gzwk8gcwhk1f9yvgiw4wc1"; depends=[]; }; proxy = derive2 { name="proxy"; version="0.4-27"; sha256="0gsng2aggnljl4z82la9hpnd26hngzhj8fizx4wx22npqjj93694"; depends=[]; }; proxyC = derive2 { name="proxyC"; version="0.3.3"; sha256="00p3604ny6qax5rr1865c27hfp90v2vga0xcrp3bb81xcfadl99y"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; @@ -14491,7 +14578,7 @@ in with self; { pseudo = derive2 { name="pseudo"; version="1.4.3"; sha256="0ccf3gz2g7g5y4acpj2qnb39hrghhdganizlddg6rx7al869fffs"; depends=[geepack KMsurv]; }; pseudorank = derive2 { name="pseudorank"; version="1.0.1"; sha256="1hjcvl38di1digkqg7nysd7bkljz1v7y54z2rz10fyk9lyp9mpmy"; depends=[doBy Rcpp]; }; pseval = derive2 { name="pseval"; version="1.3.1"; sha256="1jgnv1l9adhwrmkmp6wkzz7jf7w1hyqy47ajr29l21p4g037py45"; depends=[survival]; }; - psfmi = derive2 { name="psfmi"; version="1.0.0"; sha256="19hm8qswvrg1a1nsby3nfd6avgxl84q77xi2y2frnlh7j92wm63x"; depends=[car cvAUC dplyr ggplot2 lme4 magrittr mice miceadds mitml mitools norm pROC purrr ResourceSelection rms rsample stringr survival tibble tidyr]; }; + psfmi = derive2 { name="psfmi"; version="1.1.0"; sha256="1f5781j676cf0wvybyxh4rylzawfh949gndqfpcdl3kql1bd2215"; depends=[car cvAUC dplyr ggplot2 lme4 magrittr mice mitml mitools norm pROC purrr ResourceSelection rms rsample stringr survival tibble tidyr]; }; psgp = derive2 { name="psgp"; version="0.3-19"; sha256="0yaf69zk4zkpgx5zyksdxb2g4az0ci8v6r23phzcis9fd21y70ds"; depends=[automap doParallel foreach gstat intamap Rcpp RcppArmadillo rgdal sp]; }; psica = derive2 { name="psica"; version="1.0.2"; sha256="1cnrd1p8ikv0hl97jwypw8np1ypa0d8k2mizwd1clkv7inbb264g"; depends=[BayesTree gridBase party partykit randomForest Rdpack rpart]; }; psidR = derive2 { name="psidR"; version="2.1"; sha256="06rsi6ai58yggf73hjaidjhlgc09jjk76a4drvvgfs3v0qm296mm"; depends=[data_table foreign futile_logger openxlsx RCurl SAScii]; }; @@ -14499,7 +14586,7 @@ in with self; { pso = derive2 { name="pso"; version="1.0.4"; sha256="0dq02pv86iwxpvd8wfbryxfsxqrrw4991iim60nyh8mn02gflkmi"; depends=[]; }; psoptim = derive2 { name="psoptim"; version="1.0"; sha256="1yziabkd3h05cfl5jy5l8ji2y3w21acvxsq3inxyh0iwyr8qdkkl"; depends=[]; }; psp = derive2 { name="psp"; version="0.1"; sha256="0ls8nqfddl9yqsz6binjf5smg3vbs5r65dqv92zn6hmb51akf7q5"; depends=[]; }; - pspatreg = derive2 { name="pspatreg"; version="1.0.4"; sha256="1rnlcxb95yzcihjsah31g94fk57gmw5cyjf83mi67mrx037zzxsr"; depends=[AmesHousing dplyr fields ggplot2 MASS Matrix MBA minqa numDeriv plm Rdpack sf spatialreg spdep stringr]; }; + pspatreg = derive2 { name="pspatreg"; version="1.0.6"; sha256="1ml3vyz76lb2qgsqm5223pmx686l79hwplwj63fr7pm3vikdcsnm"; depends=[AmesHousing dplyr fields ggplot2 MASS Matrix MBA minqa numDeriv plm Rdpack sf spatialreg spdep stringr]; }; pspearman = derive2 { name="pspearman"; version="0.3-1"; sha256="09l3knwaj4xs9dfz1xcj4mbynd4w1vxcgmzfqxz97czzbf7ingwh"; depends=[]; }; pspline = derive2 { name="pspline"; version="1.0-19"; sha256="0h7y9l64knx291ms5mlc65dl3ljzgmrfzdqk1rd7iy8x7wcvymds"; depends=[]; }; pspline_inference = derive2 { name="pspline.inference"; version="1.0.4"; sha256="1ijz642igm27xg3928w9ffvykai26aar5awbcilrjbkm6fk7yd4w"; depends=[assertthat dplyr magrittr mgcv plotrix plyr reshape2 rlang]; }; @@ -14526,7 +14613,7 @@ in with self; { psymetadata = derive2 { name="psymetadata"; version="1.0.1"; sha256="1m1b1fhiv31hjc7iy20c065w25mgzmsbp0vlh2vlzrlqmfw0qpwv"; depends=[Rdpack]; }; psyntur = derive2 { name="psyntur"; version="0.1.0"; sha256="0dh7vdj3ynsxibcf0wmh5h4yknijg78azjzlma25glihpgd2nbbw"; depends=[dplyr effsize ez fastDummies formula_tools GGally ggplot2 ggthemes magrittr plyr psych purrr rlang tidyr tidyselect]; }; psyphy = derive2 { name="psyphy"; version="0.2-3"; sha256="1cf134l5j7ggclr08jb5vrj4jv4gq9s1b3njj0ic4263xg8wvv6n"; depends=[]; }; - psyverse = derive2 { name="psyverse"; version="0.1.0"; sha256="0q402z884fwnd812bs44xqbsank89risli13v3njhjc337lj29wx"; depends=[yaml yum]; }; + psyverse = derive2 { name="psyverse"; version="0.2.4"; sha256="10v1fwi5rcmsr5d4lylp7j23vc06mvkr3g4shvhw84yhba78g201"; depends=[yaml yum]; }; ptest = derive2 { name="ptest"; version="1.0-8"; sha256="1d30a23yknf7xgqj8adgr36pnh9dpffl1v5fq682f26fk3ss30qp"; depends=[quantreg]; }; ptf = derive2 { name="ptf"; version="0.0.1"; sha256="1s9nzn823z2capil83vcfs7frg8f6bpygx8aw1zz4sacnhvryr52"; depends=[Matrix plyr rARPACK Rcpp RcppArmadillo]; }; ptinpoly = derive2 { name="ptinpoly"; version="2.8"; sha256="126chp92ha48agx5i819bzdij79zbgj32msijvaid3zhxjx7qy1j"; depends=[misc3d]; }; @@ -14547,13 +14634,12 @@ in with self; { pubtatordb = derive2 { name="pubtatordb"; version="0.1.4"; sha256="0i5azbf75bwxxzpsr5fc2hh22pbwix00hz9dcdpn5jgp2957f7wx"; depends=[assertthat DBI dplyr R_utils readr RSQLite]; }; pullword = derive2 { name="pullword"; version="0.3"; sha256="125d091ba9h8h61y0m1bnflklmz898sp9w6ibca50vwz3d2qy5rz"; depends=[RCurl]; }; puls = derive2 { name="puls"; version="0.1.2"; sha256="0cdgcm4fvakk2mdjmlsnin3d0bf56wrm23p9f4bhh5j1ib68lsh5"; depends=[cluster dplyr fda fda_usc ggplot2 monoClust purrr rlang tibble tidyr]; }; - pulsar = derive2 { name="pulsar"; version="0.3.8"; sha256="0lrhz22s4622pcf9qz040sacg2myg6l3qym695v8f0a0zvabnix8"; depends=[Matrix]; }; pulseTD = derive2 { name="pulseTD"; version="0.1.0"; sha256="0sdnswinpnm0vvplrh5gl9gx4p03dx175mqxzg5r52rkzd3rfbsr"; depends=[AnnotationDbi Biobase GenomicAlignments GenomicFeatures ggplot2 Rsamtools S4Vectors SummarizedExperiment]; }; pumilioR = derive2 { name="pumilioR"; version="1.3.1"; sha256="1791r5lkr6hafd2rz9f9nfy5vc03c4833f292khvd2cg43sb0bfc"; depends=[RCurl XML]; }; puniform = derive2 { name="puniform"; version="0.2.5"; sha256="1zw8qbqnyhyvzrw6izrqgnmbawcqg2jdhcb8lxs1rd8y7cn4v4wj"; depends=[ADGofTest metafor Rcpp RcppArmadillo]; }; pureseqtmr = derive2 { name="pureseqtmr"; version="1.2"; sha256="1c2pcci3s949hi8hh0h03mr3m6qw3kvihfglwavx578kjm2qw0xz"; depends=[ggplot2 plyr rappdirs stringr tibble]; }; purge = derive2 { name="purge"; version="0.2.1"; sha256="1faf8mkaxsnj63wnig5rs50hd3j6vzaj0xkdz8kn0j7y2vvshp9p"; depends=[]; }; - purgeR = derive2 { name="purgeR"; version="1.5"; sha256="1r93jy5m9x9qgbnnh1a342479gv7f4xxz8w7g0idqd83pzsfasn0"; depends=[doSNOW foreach progress Rcpp RcppProgress]; }; + purgeR = derive2 { name="purgeR"; version="1.7"; sha256="0jcvfrgm7b85xf1lqjnidxrp0dmnqk8pjg2sj581jmkimrpf6cad"; depends=[doSNOW foreach progress Rcpp RcppProgress]; }; purging = derive2 { name="purging"; version="1.0.0"; sha256="1b8f87jn6wyh4fp6b1660bd484wcf7xiajdg9dz2594aj1r94qsr"; depends=[MASS]; }; purrr = derive2 { name="purrr"; version="0.3.5"; sha256="1vzwajjw9h6jg5l82j7nkf3iraqmzwzh40s7q6wkq14awzbnqf52"; depends=[magrittr rlang]; }; purrrlyr = derive2 { name="purrrlyr"; version="0.0.8"; sha256="0ql08dka07wi1cxjcn12pxj00j0cm112074l7byj9vmi3rlqynh8"; depends=[dplyr magrittr purrr Rcpp]; }; @@ -14574,12 +14660,13 @@ in with self; { pwrAB = derive2 { name="pwrAB"; version="0.1.0"; sha256="0ifyw40m9gsijw3vm9qb8qk4yydmdixfdpdp45x2hk93j8v61jm1"; depends=[]; }; pwrFDR = derive2 { name="pwrFDR"; version="2.8.9"; sha256="16qlxwhljhf878a7jif2kjj7hvga01bgr8zb6bh555yacxxh4yiz"; depends=[]; }; pwrRasch = derive2 { name="pwrRasch"; version="0.1-2"; sha256="13fr4yfk8aky1vv36pllx673l4lg9q7i661vbyn2zabyizd2rw3b"; depends=[]; }; + pwrss = derive2 { name="pwrss"; version="0.1.0"; sha256="16dyfi1qn50grs7dad15qqqrq5cxzkvfxy1pzr27cnp5rxyp0g5m"; depends=[]; }; pwt = derive2 { name="pwt"; version="7.1-1"; sha256="0926viwmwldmzlzbnjfijh00wrhgb0h4h0mlrls71pi5pjfldifa"; depends=[]; }; pwt10 = derive2 { name="pwt10"; version="10.0-0"; sha256="0zzdd7z9i2dc2br4njfwz7147c907pf25aihh2i3lldkqzcbxkr7"; depends=[]; }; pwt8 = derive2 { name="pwt8"; version="8.1-1"; sha256="1iig0x90ilzh3hdki0h33qgrra8r94rw4bk1x8y7i6c1may8y0v6"; depends=[]; }; pwt9 = derive2 { name="pwt9"; version="9.1-0"; sha256="0m2df89lali9945avcv4gdjpxch9in7vdd042nx0q8nv0alb4ijd"; depends=[]; }; - pxR = derive2 { name="pxR"; version="0.42.4"; sha256="1r0ffr5wxf67i1jh67v06vcmifw4hhhasd4aivic94bkvq4sqmn5"; depends=[plyr reshape2 RJSONIO stringr]; }; - pxweb = derive2 { name="pxweb"; version="0.16.1"; sha256="0yjq8967c7b4qp2gw7r8mwyvh8jggqff4hf0bkvi3mix3claz3zj"; depends=[checkmate httr jsonlite]; }; + pxR = derive2 { name="pxR"; version="0.42.7"; sha256="05i1cg35hq0z37xnh2qfcp8mnrphadrg7av5d0mcgi9nx6c1w80j"; depends=[plyr reshape2 RJSONIO stringr]; }; + pxweb = derive2 { name="pxweb"; version="0.16.2"; sha256="08lwi9adf5wavpc2cbqgyyf3cygih79wkrzf2naydnlf8xn3jcm4"; depends=[checkmate httr jsonlite]; }; pyMTurkR = derive2 { name="pyMTurkR"; version="1.1.5"; sha256="1b1cbvjbnvw2h8l3lbm0ma80zgpm212wzfhyyr6dr115k237xy89"; depends=[curl reticulate XML]; }; pyinit = derive2 { name="pyinit"; version="1.1.3"; sha256="0cbwip549d17ysbk4lrvn6a25vfjjnimjsd5myvnbvg8c9nq5ryn"; depends=[robustbase]; }; pylintR = derive2 { name="pylintR"; version="0.1.0"; sha256="00k9p3igdxhyx353gq8j9mnhrs9fh0j4q2iqa2ljfjdsdw1r2asr"; depends=[fansi htmlwidgets rstudioapi]; }; @@ -14597,7 +14684,7 @@ in with self; { qat = derive2 { name="qat"; version="0.74"; sha256="04n1jnbkf9dzafjh1n5d4q9p7hvyhnr63nmgl51jqxcf3nan5rlx"; depends=[boot fields gdata gplots moments ncdf4 XML]; }; qbld = derive2 { name="qbld"; version="1.0.3"; sha256="0zz2n8f4cn03k80wakfgjhablxhbr8hxj5ydl4m7zlya4kdkl5md"; depends=[knitr mcmcse Rcpp RcppArmadillo RcppDist rmarkdown stableGR]; }; qboxplot = derive2 { name="qboxplot"; version="0.2"; sha256="07f05n7zxgwyxg2r5fz691ra64m218w9v874xfzjx6671c40y1q2"; depends=[]; }; - qbr = derive2 { name="qbr"; version="1.1.0"; sha256="1n8arim3gmi2f6n75aqc2lzzvh6i87dv1wgs8c4jphd71fzqwqn4"; depends=[dplyr httr jsonlite magrittr purrr stringr tibble]; }; + qbr = derive2 { name="qbr"; version="1.2.0"; sha256="16nvf4qna4vbn2jcadl0klddgpgviqn8v0mv3mmc8namrvighxww"; depends=[dplyr httr jsonlite magrittr purrr stringr tibble tidyr]; }; qcQpcr = derive2 { name="qcQpcr"; version="1.5"; sha256="1298zla8z5w9z4idc07v3ca9rc1afx853y7iz3jmqnqnv8mr0s48"; depends=[ggplot2]; }; qcapower = derive2 { name="qcapower"; version="0.1.0"; sha256="14vszidjvyi8namwv5k0hpgdw1dpns5ilvxfwa920ivdg35709ki"; depends=[devtools ggforce ggplot2]; }; qcc = derive2 { name="qcc"; version="2.7"; sha256="0lc26w7p3d023lfr8v6v75m2vwqg9vi9pdipap19l4vbdq29l4zz"; depends=[MASS]; }; @@ -14613,10 +14700,10 @@ in with self; { qdm = derive2 { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; qfasar = derive2 { name="qfasar"; version="1.2.1"; sha256="14370bmq4qx5j02va13wz52m2lgl4vb992p9587z9v2sxl1v4jjg"; depends=[Rsolnp]; }; qgam = derive2 { name="qgam"; version="1.3.4"; sha256="1jyamamdffaks89rspyhmg18b4iik0nb1j0vgqzvfnm890514cvn"; depends=[doParallel mgcv plyr shiny]; }; - qgcomp = derive2 { name="qgcomp"; version="2.9.0"; sha256="12jmx1r3dnifpp2kvzx2kkz7f6xqi4jg51bbhi29z5dj4dbjn8c2"; depends=[arm future future_apply generics ggplot2 gridExtra pscl survival tibble]; }; + qgcomp = derive2 { name="qgcomp"; version="2.10.1"; sha256="0cdrb794j9wkfs80r98jbi21g21l3fm754cy364a00zzqd1f5jq3"; depends=[arm future future_apply generics ggplot2 gridExtra pscl survival tibble]; }; qgcompint = derive2 { name="qgcompint"; version="0.7.0"; sha256="0v2b7rr6m5mx3wyclbryxlcdly1a2vj8z0ywsyq4vvj66g2aa0yk"; depends=[arm future future_apply ggplot2 gridExtra qgcomp survival]; }; qgg = derive2 { name="qgg"; version="1.1.1"; sha256="11ijkr67d2b2avd0slw6cfsdhq3v10xyc36b01fj1s1whpm8vrvw"; depends=[data_table MASS MCMCpack Rcpp RcppArmadillo statmod]; }; - qgraph = derive2 { name="qgraph"; version="1.9.2"; sha256="0r225b7rnsv6wz41ij0msmqr1xy0iqxh9dbsvjixbi1hvgv91wds"; depends=[abind colorspace corpcor fdrtool ggplot2 glasso gtools Hmisc igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2]; }; + qgraph = derive2 { name="qgraph"; version="1.9.3"; sha256="14azjxlvb02wlbskbsv5x3a6gpfb8hfyijfpbay6fimnsaqnmbj6"; depends=[abind colorspace corpcor fdrtool ggplot2 glasso gtools Hmisc igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2]; }; qgshiny = derive2 { name="qgshiny"; version="0.1.0"; sha256="0ydhwg4abn8n9pwnjnwf1n1k854zw31z8f2splzdm5j279lsjg3r"; depends=[rmarkdown shiny]; }; qgtools = derive2 { name="qgtools"; version="2.0"; sha256="1gj7vbam53yr2rnxzfxng1p107bjcyjmyj47cxyzaiv19pznkbmw"; depends=[]; }; qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; }; @@ -14638,7 +14725,7 @@ in with self; { qpcR = derive2 { name="qpcR"; version="1.4-1"; sha256="1r01q7jv3w59yx1gc0qw91rq7rvdhqsi8y57sqqkmwyqfw2x2vsv"; depends=[MASS Matrix minpack_lm rgl robustbase]; }; qpdf = derive2 { name="qpdf"; version="1.3.0"; sha256="0x2n9b4avnm0p1cz6i90a3p6qjpwr68g4v0xa8d1rr3gbgqfraf8"; depends=[askpass curl Rcpp]; }; qpmadr = derive2 { name="qpmadr"; version="1.1.0-0"; sha256="0krv3zhr42z2mkkbn2bkglzfxbf06dmd9vnnc3rcyhm1r85n4fbq"; depends=[checkmate Rcpp RcppEigen]; }; - qqboxplot = derive2 { name="qqboxplot"; version="0.2.0"; sha256="0v83kjkq674ql55d9dfyw4bgybbqyvqivphn925a7wl9zqi1b3lh"; depends=[ggplot2]; }; + qqboxplot = derive2 { name="qqboxplot"; version="0.3.0"; sha256="1rsipw7cn2gqpqpa0ysj99ms5jpnbynjs4gkkmbr2w0c2466fhgx"; depends=[ggplot2]; }; qqconf = derive2 { name="qqconf"; version="1.3.0"; sha256="11sh0q5bwmqdygqd1gspx7xc5mysj18whz11afnz6s1m820snhhw"; depends=[MASS Rcpp robustbase]; }; qqman = derive2 { name="qqman"; version="0.1.8"; sha256="1a6qp5wv9bvwjchfw8x4jh48hkynlnfr21a8vqgnswldvwbq7njq"; depends=[calibrate]; }; qqplotr = derive2 { name="qqplotr"; version="0.0.5"; sha256="1ija4ik3bc404yjm5pw4y32krs1gxn6jd05pqmc0ajawydvr4w1r"; depends=[dplyr ggplot2 MASS robustbase]; }; @@ -14651,7 +14738,7 @@ in with self; { qrandom = derive2 { name="qrandom"; version="1.2.6"; sha256="00s2c3f9ji27drfyz674bszq1a7xxx8mx0m9g5vrzk9hbm1kcsfj"; depends=[curl jsonlite Rmpfr]; }; qrcm = derive2 { name="qrcm"; version="3.0"; sha256="0y1na936vk5qsir5plzjrbv39jpnq01qplza32z31x6y28is2fz9"; depends=[pch survival]; }; qrcmNP = derive2 { name="qrcmNP"; version="0.2.0"; sha256="0hxg9w4k4k14fan6hb476wnnnpf4y6xywc2vbjka7cmpl1ydw1p4"; depends=[qrcm survival]; }; - qrcode = derive2 { name="qrcode"; version="0.1.4"; sha256="1ajn7lmyaxyk1dgmhz5y8cl61g23g0cjva68ac604ffa14kfv76q"; depends=[assertthat R_utils stringr]; }; + qrcode = derive2 { name="qrcode"; version="0.2.0"; sha256="0472vfk3nlc0d99pc21909g554r9x9b8zhnlf9b995qz6jlmif2x"; depends=[assertthat knitr]; }; qrencoder = derive2 { name="qrencoder"; version="0.1.0"; sha256="1lg60lg2fiqdw0m228i8pln2p0kqp9f21qmrx6r6rwxifvwlfhv8"; depends=[base64enc png raster Rcpp]; }; qris = derive2 { name="qris"; version="1.0.0"; sha256="0rdfpxip37wxim9ini4vgjjpk5b9jqdlaygqkbid2jgjzzya98h0"; depends=[ggplot2 nleqslv quantreg Rcpp RcppArmadillo stringr survival]; }; qrjoint = derive2 { name="qrjoint"; version="2.0-6"; sha256="0vj2f3zjjvp9715jh1fapf2y9vna1vclmd2mg6i8dzf8iw3g2jqf"; depends=[coda kernlab Matrix quantreg]; }; @@ -14667,8 +14754,8 @@ in with self; { qst = derive2 { name="qst"; version="0.1.2"; sha256="0f5c4088y9c5fxyy2dyfkp049lnzvys3zyizazxsa82xwkwsbc8a"; depends=[DBI dbplyr dplyr magrittr RSQLite tibble]; }; qsub = derive2 { name="qsub"; version="1.1.3"; sha256="0ygys183pj420jr9bz13x009qis3qr1aqxgw3l2d4xx3xv90iy3g"; depends=[dplyr glue pbapply processx purrr random readr ssh stringr tidyr]; }; qte = derive2 { name="qte"; version="1.3.1"; sha256="1hz3rwsi3w2b1xjigf5s3866djcxdkjz7jwcz0rin22v5h6sql80"; depends=[BMisc data_table formula_tools ggplot2 Hmisc pbapply quantreg texreg]; }; - qtl = derive2 { name="qtl"; version="1.52"; sha256="0q49g3ar1451whsl6ig7kz4mg8s9zxlcvgkj4ivyw4995wbwc2ij"; depends=[]; }; - qtl2 = derive2 { name="qtl2"; version="0.28"; sha256="0ppc6dzlq77mppxc6bczai9gi40jrbxd1466y2cn2s8a4ah1jg9y"; depends=[data_table jsonlite Rcpp RcppEigen RSQLite yaml]; }; + qtl = derive2 { name="qtl"; version="1.54"; sha256="1rzkxkmcgd6drxbgqp6w6jab5bs7vla2x2ndv3l4nlbcwzi41jw0"; depends=[]; }; + qtl2 = derive2 { name="qtl2"; version="0.30"; sha256="0c9v5hwfmlchrdzdysvmi6dsxyclc15sqbp65l4x6zwpd0828h6c"; depends=[data_table jsonlite Rcpp RcppEigen RSQLite yaml]; }; qtl2convert = derive2 { name="qtl2convert"; version="0.28"; sha256="06703m9mkpc77agkmikr9bhr4ag1z161k8pq8l1i562mkd0qlgs8"; depends=[qtl qtl2 Rcpp]; }; qtl2fst = derive2 { name="qtl2fst"; version="0.26"; sha256="0wpqpmj752pwjgghv7b30r69nc950h5fnsszsj142p7vws7ss8j9"; depends=[fst qtl2]; }; qtl2ggplot = derive2 { name="qtl2ggplot"; version="1.2.1"; sha256="0xr1hhhwifpjbnrp6cwjijic0qwp2yiar7qvb9dl9rb2ww4r369b"; depends=[assertthat dplyr ggplot2 ggrepel purrr qtl2 RColorBrewer Rcpp rlang stringr tidyr]; }; @@ -14687,26 +14774,28 @@ in with self; { quadmesh = derive2 { name="quadmesh"; version="0.5.5"; sha256="0af795r29976ir0ma48chmlm17001xg5wd29waz356cfhinzs2nk"; depends=[geometry gridBase palr png raster reproj scales sp]; }; quadprog = derive2 { name="quadprog"; version="1.5-8"; sha256="1ka9g8zak8sg4y2xbz93dfrldznlk9qpd4pq9z21cdcdn3b8s4i2"; depends=[]; }; quadprogXT = derive2 { name="quadprogXT"; version="0.0.5"; sha256="1yna2kx9pr58vyy6f4mwx4a6avjz84wwhcary88v1k0ihhv9swcz"; depends=[quadprog]; }; + quadraticSD = derive2 { name="quadraticSD"; version="0.1.0"; sha256="07v71anh0kz898x6j677bxx5lyarc4r0z1j0vx501ffi38icc1f0"; depends=[ggplot2 shiny]; }; quadrupen = derive2 { name="quadrupen"; version="0.2-9"; sha256="1rvnl2qn9cw1wvxaklxd41p9vnnvkcypkiryfi5fi9mwx6lzz8an"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 scales]; }; - quadtree = derive2 { name="quadtree"; version="0.1.9"; sha256="1qmy4ndqjy237b5d6k3viir5barnzgq4873qz7fdr6igmz7wnpvk"; depends=[raster Rcpp]; }; + quadtree = derive2 { name="quadtree"; version="0.1.10"; sha256="07n5fllbgd9n36hra373fbvwav43w6wil5iabncah4x6a49a5aha"; depends=[raster Rcpp]; }; qualCI = derive2 { name="qualCI"; version="0.1"; sha256="09mzsy5ryyrn1gz9ahrh95cpfk7g09pmjjy0m82fh4xc7j5w6kpf"; depends=[combinat]; }; qualV = derive2 { name="qualV"; version="0.3-4"; sha256="0rkjzva2h158d5c631jmjjh7qjibbyisl0503san80rk9fgxl45b"; depends=[KernSmooth]; }; + qualitycontrol = derive2 { name="qualitycontrol"; version="0.1.0"; sha256="134dksflv43bixqa5lhcjgwqnahzpb2fnzl4dhc81wdb9pcqsg7v"; depends=[dplyr janitor openxlsx readxl stringr]; }; qualmap = derive2 { name="qualmap"; version="0.2.1"; sha256="0r8v7r2mh1dsvr9lvdcmddp5agbx5djg7850zf6ixlv8zak6cxz5"; depends=[dplyr glue leaflet purrr rlang sf]; }; qualpalr = derive2 { name="qualpalr"; version="0.4.3"; sha256="1hlssqj2129796d00gnip3ih5b705qasw0hkj25xfz7xak0vdbkm"; depends=[assertthat randtoolbox Rcpp RcppArmadillo RcppParallel]; }; - qualtRics = derive2 { name="qualtRics"; version="3.1.6"; sha256="163m0lmrcnxhx3f73fdd0bw6h5z4pqn8bbvxhk95pm2yn7pnbx9y"; depends=[assertthat dplyr glue httr jsonlite lifecycle lubridate purrr readr rlang sjlabelled stringr tibble tidyr]; }; + qualtRics = derive2 { name="qualtRics"; version="3.1.7"; sha256="0jfzghqj8qz5wz13j4v0h58l7mflmz7jm324j2agr109q2kl2vma"; depends=[cli dplyr glue httr jsonlite lifecycle lubridate purrr readr rlang sjlabelled stringr tibble tidyr]; }; qualvar = derive2 { name="qualvar"; version="0.2.0"; sha256="1c7b7lcyq2l46sslk185r6xfh5fb35z9qihrhnh294sw1k52bffa"; depends=[]; }; qualypsoss = derive2 { name="qualypsoss"; version="1.1.1"; sha256="1kcdmbj0wyycp7i4d3hb1addnl1c7ndkc6qnbnds0vcfk1dfxd8h"; depends=[doParallel foreach ggthemes MASS mvtnorm QUALYPSO]; }; quantCurves = derive2 { name="quantCurves"; version="1.0.0"; sha256="0z00agd4q157cjkc4gwyfw3kka043wcf5j7yzn8cqm281fqh1jny"; depends=[KernSmooth locpol np quantreg quantregGrowth]; }; quantdates = derive2 { name="quantdates"; version="1.0"; sha256="1hyds8rwr1yg740aq4w5fqjrwdf3dl4phf8mj8qsgbb7i0wbbf3q"; depends=[lubridate]; }; quantdr = derive2 { name="quantdr"; version="1.2.2"; sha256="0w6jdd6i4wxbk4fp44rmy32mwq9ng63zwamq8zpa1hlfbm5qh4s2"; depends=[dr KernSmooth mvtnorm quantreg]; }; - quanteda = derive2 { name="quanteda"; version="3.2.3"; sha256="1blk9nhydvqyyz0kzhph7nh7ahcjzflmgyr4sv8fx5bpmn4hwjzk"; depends=[fastmatch magrittr Matrix Rcpp RcppArmadillo RcppParallel SnowballC stopwords stringi xml2 yaml]; }; + quanteda = derive2 { name="quanteda"; version="3.2.4"; sha256="1yg3lgckh6fncmw037p4gaa2bab59yh6izqix1cgyysjg4jpcw62"; depends=[fastmatch magrittr Matrix Rcpp RcppArmadillo RcppParallel SnowballC stopwords stringi xml2 yaml]; }; quanteda_textmodels = derive2 { name="quanteda.textmodels"; version="0.9.5-1"; sha256="0i61bnk6hvrxqsrvmcpnak2c2drxiymxa28751s3yicm10m32i61"; depends=[glmnet LiblineaR Matrix quanteda Rcpp RcppArmadillo RcppParallel RSpectra SparseM stringi]; }; quanteda_textplots = derive2 { name="quanteda.textplots"; version="0.94.2"; sha256="1favm1cpka1gkpnq2qwqynay15q6f29b66wmm60wsd7dhsxcyjb6"; depends=[extrafont ggplot2 ggrepel igraph Matrix network quanteda RColorBrewer Rcpp sna stringi]; }; quanteda_textstats = derive2 { name="quanteda.textstats"; version="0.96"; sha256="1sp0xd31z63ahqhv1vp0vj6sy4cal0rh7pga1rmc6nnc6dszgfis"; depends=[Matrix nsyllable proxyC quanteda Rcpp RcppArmadillo RcppParallel stringi]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; quantilogram = derive2 { name="quantilogram"; version="2.2.1"; sha256="0gvr93d6jjixcrislym0mna2l3plqhl8adaqiagdvxg4y0adfmf0"; depends=[np quantreg SparseM]; }; - quantities = derive2 { name="quantities"; version="0.1.6"; sha256="0kz95q8npiir8nadvfnpnnm9z5jg9mqk7b1fp6l0bj8asmjyw1l3"; depends=[errors Rcpp units]; }; + quantities = derive2 { name="quantities"; version="0.2.0"; sha256="0lp6s9kwgs7vw36nq2qq40n68wqzycr94q0hc4rlgc4gvwwm1sj6"; depends=[errors Rcpp units]; }; quantkriging = derive2 { name="quantkriging"; version="0.1.0"; sha256="0v6kckgzhgsn3158sc06xszdhmk8sfny10j1qyppxsl2hk89n8jf"; depends=[ggplot2 hetGP Matrix reshape2]; }; quantmod = derive2 { name="quantmod"; version="0.4.20"; sha256="154fqhw46kc7r08zsj5fsg97hg93phsli3z14xwmz22xb50xymzp"; depends=[curl TTR xts zoo]; }; quantoptr = derive2 { name="quantoptr"; version="0.1.3"; sha256="0f9vy9yhya4wpya8n345s6n7a5sb29chdkl5fz6dwa31lp1mvvj3"; depends=[quantreg Rdpack rgenoud stringr]; }; @@ -14720,10 +14809,10 @@ in with self; { quarrint = derive2 { name="quarrint"; version="1.0.0"; sha256="13fdmmrgn23xd9vpywmcl7pf729gmcxjfl1wxs30axsbp4h1s6rk"; depends=[neuralnet]; }; quarto = derive2 { name="quarto"; version="1.2"; sha256="186q07r2hwldhk6fvhamaqq21g5c74jp967rqan13l4diakgb739"; depends=[jsonlite later processx rmarkdown rsconnect rstudioapi yaml]; }; queryparser = derive2 { name="queryparser"; version="0.3.1"; sha256="1pz66f3wxvvv42l5hib7hbpy14s8a13gn0n57vf6v5zdnz423kdr"; depends=[]; }; - queryup = derive2 { name="queryup"; version="1.0.0"; sha256="0a7y1vagv635cf40w208z17b8r3rlj4zidfcx8r3lnasbama7jpl"; depends=[jsonlite RCurl]; }; + queryup = derive2 { name="queryup"; version="1.0.1"; sha256="0yr73g4a5aghdxn3qc9y1al8n9m499x5vppzx9adrnhl0y0nigsf"; depends=[jsonlite RCurl]; }; quest = derive2 { name="quest"; version="0.1.0"; sha256="15al3j850v7i59zr9yybxjrb3lnpd14369rp5vnpzwxy80jpy7d9"; depends=[car plyr psych psychTools str2str]; }; questionr = derive2 { name="questionr"; version="0.7.7"; sha256="0mpxkmrv1v7fjj1hz1633n154s525p6skclybdhwmgldv45w896f"; depends=[classInt highr htmltools labelled miniUI rstudioapi shiny styler]; }; - queuecomputer = derive2 { name="queuecomputer"; version="1.1.0"; sha256="1lzc0hfva8dpz2q5g0abjc2avyqdffi8g1qi5h6mvx8qn5kx7bmw"; depends=[dplyr Rcpp RcppArmadillo tidyr]; }; + queuecomputer = derive2 { name="queuecomputer"; version="1.2.0"; sha256="0qlcj4rqfkp8qanzwi1p2s7r89x5w6aa8zwkcl7rqapbd4nwayhc"; depends=[dplyr Rcpp RcppArmadillo tidyr]; }; queueing = derive2 { name="queueing"; version="0.2.12"; sha256="0hw1ykm24cjpfwh7ac7fjf7mhc59mq8wy2g07aacpy5ibwi8bbsf"; depends=[]; }; quhomology = derive2 { name="quhomology"; version="1.1.1"; sha256="0wiih00zk4682wy1r4nyifh76h5bnvl3f785wjzmrwylnfy951l3"; depends=[MASS numbers]; }; quickNmix = derive2 { name="quickNmix"; version="1.1.1"; sha256="01gnvnpfxry354qf772m187mfvjigqngjpi1k9y1g5nvlv7a4d62"; depends=[doParallel foreach optimParallel]; }; @@ -14742,6 +14831,7 @@ in with self; { quiltr = derive2 { name="quiltr"; version="0.1.0"; sha256="1my36y9kf52jm6w923qmffi3809d0xcc68sm5ngvfacszn665k23"; depends=[]; }; quincunx = derive2 { name="quincunx"; version="0.1.5"; sha256="1jny5q2sdndc26phqfr0vj3ry6pcdjcgdqqwqkhlf0x97vlicgb7"; depends=[concatenate dplyr glue httr lubridate magrittr memoise progress purrr rlang rvest stringr tibble tidyjson tidyr vroom writexl]; }; quint = derive2 { name="quint"; version="2.2.2"; sha256="1fmzdnikskq8f70h6bh5ig5s6d227bzd6q93n2c05ymj1m5s9ban"; depends=[Formula partykit rpart]; }; + quoradsR = derive2 { name="quoradsR"; version="0.1.0"; sha256="1gdb5zvi7hs2mpzv07w1mbm9w4ksidbz28mjb6w20bfpy6casfz5"; depends=[jsonlite]; }; quotedargs = derive2 { name="quotedargs"; version="0.1.3"; sha256="11cswg9bmddsl1axxcdz11flq46p1zkpv022526f2vgl4qsprwbm"; depends=[]; }; qut = derive2 { name="qut"; version="2.2"; sha256="1jsp3sv1631ar1sad8fy4l60ar2pbi20g50yz9mhs83427n3l63b"; depends=[flare glmnet lars Matrix]; }; qvcalc = derive2 { name="qvcalc"; version="1.0.2"; sha256="0banzv78kb53ybfbh1hmgx7kxvpbbdxzg4dsn7vrwhmxs72srkch"; depends=[]; }; @@ -14753,9 +14843,9 @@ in with self; { r2d2 = derive2 { name="r2d2"; version="1.0.1"; sha256="1956p9xr9as8v4673d6fsdyas3racfzh6a5pafqz56r8ai1ssbyq"; depends=[KernSmooth MASS sp]; }; r2d3 = derive2 { name="r2d3"; version="0.2.6"; sha256="15mphywsr0603ipbgzac65n1nj7m77fmw3ypc33p9ng4fllg035r"; depends=[htmltools htmlwidgets jsonlite rstudioapi]; }; r2dictionary = derive2 { name="r2dictionary"; version="0.1"; sha256="0assylz2ih96l4jily76hp524h5xbnc27ln8yjvk9c4q88yr8xfy"; depends=[rstudioapi stringr]; }; - r2dii_analysis = derive2 { name="r2dii.analysis"; version="0.2.0"; sha256="1bd1byr7n488d0ig393vdg7mdg902hmhwaim6hcx31brqzz19kam"; depends=[dplyr glue lifecycle magrittr r2dii_data rlang tidyr tidyselect zoo]; }; + r2dii_analysis = derive2 { name="r2dii.analysis"; version="0.2.1"; sha256="0408r5vlq5kgd0b653sywi62rkfw1sg3m4via072c5bdr207bj8d"; depends=[dplyr glue lifecycle magrittr r2dii_data rlang tidyr tidyselect zoo]; }; r2dii_data = derive2 { name="r2dii.data"; version="0.3.1"; sha256="00a1flpqak862yf0x98kap1jalz3485mwhps3ywi1i5b9g3g2x4q"; depends=[lifecycle]; }; - r2dii_match = derive2 { name="r2dii.match"; version="0.1.1"; sha256="030lvmi34fsbllwz0vhfxfmyar08x83hl7gkf6q6g5s54d1am1lr"; depends=[data_table dplyr glue lifecycle magrittr purrr r2dii_data rlang stringdist stringi tibble tidyr tidyselect]; }; + r2dii_match = derive2 { name="r2dii.match"; version="0.1.3"; sha256="19k6g7pa7jdsbpclkvppj3m08vji79jnijywzplwy01c84by5gf8"; depends=[data_table dplyr glue lifecycle magrittr purrr r2dii_data rlang stringdist stringi tibble tidyr tidyselect]; }; r2dii_plot = derive2 { name="r2dii.plot"; version="0.3.0"; sha256="0xfirb7xq199mxngjva535nqfdfl8ff26bmfdk141hg9fysfs00v"; depends=[dplyr forcats ggplot2 ggrepel glue lifecycle magrittr r2dii_data rlang scales stringr]; }; r2glmm = derive2 { name="r2glmm"; version="0.1.2"; sha256="0iim92blpa59vgz97c2pi05yhbjjmaffdbkbmk5kplfb2vmazgiy"; depends=[afex data_table dplyr ggplot2 gridExtra lmerTest MASS Matrix mgcv pbkrtest]; }; r2mlm = derive2 { name="r2mlm"; version="0.3.2"; sha256="04j8q1j5r2z6vjji3lgw6c6mn3xip339zwqbli0limx9lklcdjr6"; depends=[dplyr lme4 magrittr nlme rlang rockchalk stringr tidyselect]; }; @@ -14766,6 +14856,7 @@ in with self; { r2resize = derive2 { name="r2resize"; version="1.3"; sha256="14zk3vhisb3fy2khx7w98zl4jzq2pnyh9sdpjc5rbr3yqpmj6mi2"; depends=[DT shiny]; }; r2rtf = derive2 { name="r2rtf"; version="0.3.5"; sha256="1dhmkv2qv1rqkmd53ca2r85178p05jm5l8m01inyz96vqjdk1h4z"; depends=[]; }; r2shortcode = derive2 { name="r2shortcode"; version="0.1"; sha256="03djy8m146k31xgvwcbrd1nzwj4wdlvvwzgviv80kskgr6ld9jrj"; depends=[magrittr stringr]; }; + r2social = derive2 { name="r2social"; version="1.0"; sha256="1jmhq2qfh3wn47ysl8lairhj7zibiq0dw5nfx0ki1d3vi6f7bv5r"; depends=[htmltools shiny]; }; r2spss = derive2 { name="r2spss"; version="0.3.2"; sha256="1d0znbw0bmgl8k9xwz78lmidh8338n3vq4f9qyqmb87nvjmiilhl"; depends=[car ggplot2 scales]; }; r2sundials = derive2 { name="r2sundials"; version="5.0.0-10"; sha256="1hv5wq6lxrv57pszxky4xiwhjhjlzxa4fh0flrrmrrk89dygkx9v"; depends=[Rcpp RcppArmadillo rmumps]; }; r2symbols = derive2 { name="r2symbols"; version="1.2"; sha256="1vwg0i42gb768j30vhr8hvlb32df19lbjf5kyya15z1a0x6b4sz8"; depends=[htmltools jsonlite]; }; @@ -14786,6 +14877,7 @@ in with self; { rAverage = derive2 { name="rAverage"; version="0.5-8"; sha256="09yap3qv02k5nidi6a4png9xa5yy7cb8hg8s2dq99wnc88s42d26"; depends=[]; }; rBDAT = derive2 { name="rBDAT"; version="0.10.0"; sha256="1vndnip3rpvlgmnmi91r23nyr59v6dmm8m5i2yxi7pim1l35323r"; depends=[]; }; rBMF = derive2 { name="rBMF"; version="1.1"; sha256="16yg1k7vv88q421nk1a70626c7c54bwnb3x7kiyxv2c0ha00f3g8"; depends=[Matrix Rcpp]; }; + rBahadur = derive2 { name="rBahadur"; version="0.9.1"; sha256="1wfhn4k32jnvw5gxvc8izwfgi8xbg9v3wr7m7w08hyp4n8k6fnfz"; depends=[]; }; rBayesianOptimization = derive2 { name="rBayesianOptimization"; version="1.2.0"; sha256="0gwdzv4wl4n940ph23yhjh0s192k9visvivww5k1kmy2b1j88cva"; depends=[data_table foreach GPfit magrittr]; }; rBeta2009 = derive2 { name="rBeta2009"; version="1.0"; sha256="0ljzxlndn9ba36lh7s3k4biim2qkh2mw9c0kj22a507qbzw1vgnq"; depends=[]; }; rBiasCorrection = derive2 { name="rBiasCorrection"; version="0.3.4"; sha256="1ivxxw7jf1s95abjwc794mqklkvlgvgyyb6ii99x6mnga6flh11n"; depends=[data_table future future_apply ggplot2 magrittr nls2 polynom]; }; @@ -14808,7 +14900,7 @@ in with self; { rFSA = derive2 { name="rFSA"; version="0.9.6"; sha256="1fxd194iq8jnlsnj76mjq2f6db7ln641qwfsf5v63kx3qqhn8x5s"; depends=[hash rPref tibble tidyr]; }; rFerns = derive2 { name="rFerns"; version="5.0.0"; sha256="1yw3np5iamnr7f3nrd507dkyz76nxmzdpinwxncv87yw30g6gnkq"; depends=[]; }; rForest = derive2 { name="rForest"; version="0.1.4"; sha256="0vk9sfnbzpjqh7mr3qwi5awlh8qc0h1i6qwbyv7qj72apy05s2d8"; depends=[alphashape3d geometry rgl sp]; }; - rGV = derive2 { name="rGV"; version="0.0.2"; sha256="079nrlyywzk3cgy6mkizyzd8z0w2a4ghjcp9jpv15zcznzdnaqzp"; depends=[chron]; }; + rGV = derive2 { name="rGV"; version="0.0.3"; sha256="0hqn1lh1bjjsdmj10drdflag5nrakh73b2m53iy4vhsr47gz07n9"; depends=[chron]; }; rGhanaCensus = derive2 { name="rGhanaCensus"; version="0.1.0"; sha256="1i8z2cfzk64yhvkia1khsmw666dflai1sj8bhd8n2d97a45nb230"; depends=[]; }; rGroovy = derive2 { name="rGroovy"; version="1.3"; sha256="172vm4diygzi4ipmw8bl03k0x3aps0h1vkvwvw539kamy7xb5w98"; depends=[rJava]; }; rIP = derive2 { name="rIP"; version="1.2.0"; sha256="1f3gbd3ij047n0rh4a7yy6wdjz3b89rki7zaz4y9zgw6bad6ylkl"; depends=[amerika dplyr httr iptools jsonlite]; }; @@ -14818,7 +14910,6 @@ in with self; { rJava = derive2 { name="rJava"; version="1.0-6"; sha256="1ijqhvnb8ab38cp9pwdf7zq7xqqlm6x94gkrab2dd98p6d4x1472"; depends=[]; }; rKOMICS = derive2 { name="rKOMICS"; version="1.1"; sha256="0zs7a75hgrj4ajbbxn0kmc2871rakyizhwdn7ryha8bgig4ld3cs"; depends=[ape circlize ComplexHeatmap dplyr factoextra FactoMineR ggplot2 ggpubr magrittr reshape2 stringr]; }; rKenyaForex = derive2 { name="rKenyaForex"; version="0.1.0"; sha256="1y5hdc1n8kan42vzg6kpfgz68s1bpd93pavcisxh03c76zkf9ap9"; depends=[]; }; - rKolada = derive2 { name="rKolada"; version="0.2.1"; sha256="1c1ci6dn3yqgp7qm1fih8dlq67dpbc1wlxhzcrzs0zzign47vgvd"; depends=[dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr urltools]; }; rLDCP = derive2 { name="rLDCP"; version="1.0.2"; sha256="0k7zc1xyqmcl7070hhpqw1d2k1ij6bd4wjym8cw263pds2n7nx21"; depends=[XML]; }; rLFT = derive2 { name="rLFT"; version="1.0.1"; sha256="0d86z5ckhkavgr2xi9pk7pw8ss3whrssa7na43kj0pirax9cys4z"; depends=[Rcpp sf]; }; rLTP = derive2 { name="rLTP"; version="0.1.4"; sha256="04w432m03xwh0szshsrfw5h7wy43q4lj8z0y07k8w6gsf27cy5bx"; depends=[RCurl]; }; @@ -14826,6 +14917,7 @@ in with self; { rLiDAR = derive2 { name="rLiDAR"; version="0.1.5"; sha256="0sw79zr7hdwprlwijlg6qmn7pmpcnhxfr7ycdz09058c0kd815h8"; depends=[bitops deldir geometry plyr raster rgeos rgl sp spatstat_geom]; }; rMEA = derive2 { name="rMEA"; version="1.2.2"; sha256="18manb926yd6a3b6im7g2vf1cbvvdkg15i6zl223npckhna2nbx0"; depends=[]; }; rMIDAS = derive2 { name="rMIDAS"; version="0.4.1"; sha256="0q40ksz09c8mv3kci35k561f92nz26vb5w4kh7xpkcmwig8bcqwx"; depends=[data_table mltools reticulate]; }; + rMOST = derive2 { name="rMOST"; version="0.0.2"; sha256="0dy0sls9sl4n1hsyw6rczcffl1p03nlxs1m1jhdk9a00wrwkzvky"; depends=[nloptr]; }; rMR = derive2 { name="rMR"; version="1.1.0"; sha256="0da1hclfnnlkp9by6zf2p079643p8nimplr9p3ipbjdy739j344z"; depends=[biglm]; }; rMVP = derive2 { name="rMVP"; version="1.0.6"; sha256="0c3bmn7k5hgw8mgplyhwf6dkgvrxd29yj829wy5j9z1p88gq6wrk"; depends=[BH bigmemory MASS Rcpp RcppArmadillo RcppEigen RcppProgress]; }; rMisbeta = derive2 { name="rMisbeta"; version="1.0"; sha256="1h4vilnndl0gnz9z0sgbywp4zy44718zpiqcqigbjbd4lymi0y61"; depends=[ROC]; }; @@ -14848,14 +14940,13 @@ in with self; { rSEA = derive2 { name="rSEA"; version="2.1.1"; sha256="18108ds65ykxygbw1s4i5rb1ngzwymv1x3dhcv1lcwkmqplnaar9"; depends=[ggplot2 hommel]; }; rSFA = derive2 { name="rSFA"; version="1.5"; sha256="17jabv64rgaxs5kx579vjrhcw2k08c6ah6a11cswl8v9h0vjjz8i"; depends=[MASS]; }; rSHAPE = derive2 { name="rSHAPE"; version="0.3.2"; sha256="0z6dizsxlkmaymbd24b1m1i8kmndcf21nxxnyfzq6gvdii7bal4h"; depends=[abind DBI doParallel evd foreach RSQLite sn VGAM]; }; - rSPARCS = derive2 { name="rSPARCS"; version="0.1.0"; sha256="0k46nhkdn68c7h7bbbdfwl02bldi1m3m62zbp20kh8np9bxy1rnk"; depends=[data_table geosphere plyr raster sp spatialEco tigris]; }; rSPDE = derive2 { name="rSPDE"; version="1.2.0"; sha256="1qwmjzp7iz7rhaa4kslcm133m5rwxk381r2yqqqccf0r9cah7klf"; depends=[Matrix]; }; + rSRD = derive2 { name="rSRD"; version="0.1.5"; sha256="1kmivz5qlfqq300lcg8qjl79dhcbdmq9xxx18bn57yks7g7ksk8s"; depends=[dplyr ggplot2 ggrepel janitor Rcpp rlang stringr tibble]; }; rSpectral = derive2 { name="rSpectral"; version="1.0.0.9"; sha256="1r1ygvgp2z82nsqx3q9ax4zf0ylgwqlv13sgbqacaxn07b7yx1xv"; depends=[graph igraph Rcpp RcppArmadillo Rdpack]; }; rStrava = derive2 { name="rStrava"; version="1.1.4"; sha256="00y400znkwyr6y33wiz0jikpa31a60hdcmsi9x3724zwjh28vynj"; depends=[bitops dplyr geosphere ggplot2 ggrepel googleway httpuv httr magrittr plyr purrr RCurl rvest tibble tidyr V8 XML xml2]; }; rTCRBCRr = derive2 { name="rTCRBCRr"; version="0.1.1"; sha256="0k4blxbnyzgfgcvn59zw8fnw6avhgbmbgkk6a1ycpz1jijy1sn2z"; depends=[magrittr readr tidyr tidyselect]; }; rTG = derive2 { name="rTG"; version="1.0.1"; sha256="1wsas7wvyzbiw31iv0qazjmnxj7al84y5kpvglf1f0dd444y4hc0"; depends=[brnn dplyr ggplot2 knitr magrittr mgcv]; }; - rTLS = derive2 { name="rTLS"; version="0.2.5.2"; sha256="10fkd8ylj9xwvgwnirjw4n6c4vl8y5x8q4mq2zmwlpjryknx82kv"; depends=[alphashape3d boot data_table doSNOW foreach Rcpp RcppArmadillo RcppHNSW RcppProgress rgeos rgl sp]; }; - rTRIPLEXCWFlux = derive2 { name="rTRIPLEXCWFlux"; version="0.1.0"; sha256="1fh4xnfg7b90gqc10g7dxffc9kan644684vmc5p4h27bs53b5b5p"; depends=[]; }; + rTRIPLEXCWFlux = derive2 { name="rTRIPLEXCWFlux"; version="0.2.0"; sha256="0gliwrbwynxm0ldnvpqs8yl6k63y54kr4ggx21zsvjbqbxs2q4v3"; depends=[]; }; rTRNG = derive2 { name="rTRNG"; version="4.23.1-2"; sha256="0rba3dxy97r75mxfn8rxrk2081my79la2m5m9h5ms2z5px07llqd"; depends=[Rcpp RcppParallel]; }; rTableICC = derive2 { name="rTableICC"; version="1.0.7"; sha256="1z896675kmm9p5dnmcnsz2205ynf05laqcxvlc9y0g5i0x8rf8v6"; depends=[aster partitions]; }; rTensor = derive2 { name="rTensor"; version="1.4.8"; sha256="1ks4rwaish24sg5gc2jkfdqfq6h8gh9f3wdxk3dxjgpwjqwijz8f"; depends=[]; }; @@ -14926,8 +15017,8 @@ in with self; { randomizr = derive2 { name="randomizr"; version="0.22.0"; sha256="1grm0h3xkb0pdbbv0gd531g1kn6njp0gcy5fh153rrmajxgd8hhw"; depends=[]; }; randquotes = derive2 { name="randquotes"; version="0.1.1"; sha256="0fj9vx0c4059511wka7ip30yz87y144pz7ny840gp72qm73pp8li"; depends=[curl httr jsonlite xml2]; }; randtests = derive2 { name="randtests"; version="1.0.1"; sha256="1r1b76g9qlss75qqyh05wic4k08xixgx6lgs7gc49an71h0mi5a7"; depends=[]; }; - randtoolbox = derive2 { name="randtoolbox"; version="2.0.2"; sha256="0mvafd2gm1jpg19gdn6bw8668pqghi0xmcb56rl4fwamg8jg09xn"; depends=[rngWELL]; }; - rangeBuilder = derive2 { name="rangeBuilder"; version="1.6"; sha256="1r39f2i2g7lf959b39nk355jm6iyjcqcp8lk47s6qp7wnnqh9h9p"; depends=[alphahull cleangeo data_table pbapply raster Rcpp rgeos sp stringdist stringi]; }; + randtoolbox = derive2 { name="randtoolbox"; version="2.0.3"; sha256="0i23wj9nmsfy3x2yzlfadzrvil2yhcrxs6qxrykrqs15r9jwx3hm"; depends=[rngWELL]; }; + rangeBuilder = derive2 { name="rangeBuilder"; version="2.0"; sha256="10sp40jkqv04980dqqshk1ixsl789sk3sdf8ygwfp95a44rx20v4"; depends=[alphahull pbapply Rcpp rnaturalearth sf stringi terra units]; }; rangeMapper = derive2 { name="rangeMapper"; version="2.0.3"; sha256="1wasvd3k2c6crl2q27d9q88x21pv66b6h9x3msfdcw0k0h719dzc"; depends=[data_table DBI exactextractr future future_apply glue magrittr progressr raster RSQLite sf]; }; rangeModelMetadata = derive2 { name="rangeModelMetadata"; version="0.1.4"; sha256="102z7ysbw0i1mbnwg0v3h0i094ksw91q84a53qyxndq4m6f557aj"; depends=[dplyr jsonlite MASS raster rgbif rgdal rgeos shiny sp spatstat spocc spThin]; }; rangemap = derive2 { name="rangemap"; version="0.1.18"; sha256="17ycliswmsrc1rvyxj2ik2rs7f061dvam6ck0pm6myj52m2xg781"; depends=[concaveman dplyr maps maptools raster rgdal rgeos rgl rnaturalearthdata scales sf sp spatial]; }; @@ -14940,11 +15031,11 @@ in with self; { rankhazard = derive2 { name="rankhazard"; version="1.1.0"; sha256="0kljn9b74alrd22b5pwfnamdbaqi2wa2z6yzpmgpfs3x0hv72fw7"; depends=[survival]; }; rankinPlot = derive2 { name="rankinPlot"; version="1.0.1"; sha256="0vn04ash9d7n3y8g1yrgmsj357qfskfh31l4fj5h745s1rqfm5i8"; depends=[ggplot2 scales]; }; rankrate = derive2 { name="rankrate"; version="1.0.0"; sha256="0i4sf9hhyxry07bc31c1ww7hqig1r2vgkds34q5csq7g3mic3shf"; depends=[gtools lpSolve nloptr]; }; - ranlip = derive2 { name="ranlip"; version="1.0.1"; sha256="04jh7m8gmz0b4h507amnj708sg5qf4fzawybss01681hsnb3swnz"; depends=[Rcpp]; }; rapbase = derive2 { name="rapbase"; version="1.23.0"; sha256="0n378cdvhfsl638k03rw844pr9298sbk84yn8hixk6f5igihbg40"; depends=[base64enc bookdown DBI digest dplyr DT jsonlite kableExtra knitr magrittr readr rlang RMariaDB rmarkdown rpivotTable sendmailR shiny shinyalert sship yaml]; }; rapiclient = derive2 { name="rapiclient"; version="0.1.3"; sha256="1pm4kdga2nz1cpmchdb0ad8gr3bqfm84b1kl32cyc0x3x5rr2syz"; depends=[httr jsonlite yaml]; }; rapidjsonr = derive2 { name="rapidjsonr"; version="1.2.0"; sha256="07zdirhbzmvq3cp4xn8ngk1lgxbbabzays315zxbs3sxrz6lzjb2"; depends=[]; }; rapidoc = derive2 { name="rapidoc"; version="8.4.3"; sha256="1i7f122iigbaah1c3g5vfmnypwilcgc1i3d0l3985s5fjj44dnhn"; depends=[jsonlite]; }; + rapidphylo = derive2 { name="rapidphylo"; version="0.1.0"; sha256="1mhfhvpm09r0jw6dvjszz139fw4m2fb3509xbw5dwpxnhjc2350n"; depends=[ape phangorn]; }; rapidraker = derive2 { name="rapidraker"; version="0.1.3"; sha256="1dhjsv22rdsv668d8dzdd6pm5xy549iiycv6isjmc5cwj3dp5fyz"; depends=[openNLPdata rJava slowraker]; }; rapidxmlr = derive2 { name="rapidxmlr"; version="0.1.0"; sha256="14pa08yp8xmbqk8wwinz1xsphx75xq6vg8zgzcxc5zgmcf0ja5if"; depends=[]; }; rappdirs = derive2 { name="rappdirs"; version="0.3.3"; sha256="1161i3jgjvzjv4p8qbz9r976fnggkcrw3mlj4yd1h2svnijrz5a9"; depends=[]; }; @@ -14958,13 +15049,14 @@ in with self; { rarms = derive2 { name="rarms"; version="1.0.0"; sha256="11wjxd3pxvjv1j2nz26l8f0kykk9w6lf08izhivfngp63dk2akns"; depends=[jsonlite]; }; rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; }; rassta = derive2 { name="rassta"; version="1.0.5"; sha256="0yia0pwg29fd6hq0f96hdf6k70pj296805a4lgxn4qqwn3gw7006"; depends=[cluster data_table dplyr DT foreach GGally ggplot2 histogram KernSmooth kohonen plotly rlang scales shiny stringdist stringi terra]; }; - raster = derive2 { name="raster"; version="3.6-3"; sha256="1in3n0hqzcdhibjl3y82nwn6m6wcv4k3l6s2jw57jn32qgvy01lz"; depends=[Rcpp sp terra]; }; + raster = derive2 { name="raster"; version="3.6-11"; sha256="1arvmhf3ijzh3aanw8n6mdnwk4h26axsxpszvr5g43l7g5vfmggf"; depends=[Rcpp sp terra]; }; rasterDT = derive2 { name="rasterDT"; version="0.3.1"; sha256="1dl083jm4x0shl7lq4in2alksgi63hp1p7j2cnsvkmwjaxygzm9v"; depends=[data_table fasterize raster sf]; }; rasterImage = derive2 { name="rasterImage"; version="0.4.0"; sha256="191m5k1rbbwziznmxbsq4g55afkw8gb5011i70f3wx3dscr3phxz"; depends=[plotrix]; }; rasterKernelEstimates = derive2 { name="rasterKernelEstimates"; version="1.0.2"; sha256="0az96k8l7yjya5mg5ckda43qy9h8iad5gyyxi1ycld3kzcwiinhj"; depends=[raster]; }; - rasterVis = derive2 { name="rasterVis"; version="0.51.2"; sha256="0kgg6cm7xjqya2d46w0i1i1wjpkb8f99lyqy7rgwa7l9xmwzj5n1"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp terra viridisLite zoo]; }; + rasterList = derive2 { name="rasterList"; version="0.5.14"; sha256="1c2l3p1353nfpib5xcsyyipgcvidj1kl8q9p076hs7j7341xgrfg"; depends=[raster]; }; + rasterVis = derive2 { name="rasterVis"; version="0.51.4"; sha256="1z4vwjmx8n01jc2ypqs1pmx70rc3pjaz3ahk8j8zcif40v0qgy6i"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp terra viridisLite zoo]; }; rasterbc = derive2 { name="rasterbc"; version="1.0.1"; sha256="17knrhvy2qkdz5bvhnllfkv8w4cm5gjjninwh66pk1xfrqkd4skg"; depends=[sf terra]; }; - rasterdiv = derive2 { name="rasterdiv"; version="0.2-5.2"; sha256="18ywr1xmhyybg1ip5vi9hz9ms5zxfm49z5qprc3wwvxvssva5zg3"; depends=[foreach progress proxy raster svMisc terra]; }; + rasterdiv = derive2 { name="rasterdiv"; version="0.3.1"; sha256="01fxi3i1p280n38aaffnnj68w2ri8s5qrapvc44viqv3133n837l"; depends=[foreach progress proxy raster svMisc terra]; }; rasterize = derive2 { name="rasterize"; version="0.1"; sha256="18nrhmq1qmi05rkyr86xsyc8nz0fbdpf2d45h62bbfzbfynqd4qy"; depends=[png]; }; rasterpdf = derive2 { name="rasterpdf"; version="0.1.1"; sha256="0zi54nifbb4dzb29i8rskynblw3z42vzaykwbq30ia5zs9q1bvm5"; depends=[png]; }; rasterpic = derive2 { name="rasterpic"; version="0.2.1"; sha256="00fjn9lyx81jncxml5pw0xfbmsi2kh3mvdrvz73jhqha52zxhpl6"; depends=[png sf terra]; }; @@ -15004,8 +15096,8 @@ in with self; { rbgm = derive2 { name="rbgm"; version="0.1.0"; sha256="0jw7p6l0il0fz5rq7ra731xzj06aqqvm9s1r0hwa4rd74lkg198n"; depends=[dplyr geosphere raster reproj rlang sfheaders sp]; }; rbhl = derive2 { name="rbhl"; version="0.9.2"; sha256="0rs1mmah4yyy5dgz1lvzslm4dk53x0wpiy3742z3hwr8p4agnkqi"; depends=[crul jsonlite plyr tibble xml2]; }; rbi = derive2 { name="rbi"; version="0.10.4"; sha256="0p0cvdzhb81drk5b9fb9jcnw5c02i7qfy7vwyyhk2b1vm9rkw681"; depends=[data_table ncdf4 processx reshape2]; }; - rbi_helpers = derive2 { name="rbi.helpers"; version="0.3.2"; sha256="1inbf3kpl4y46m7v36akrr24112y4sd3d8yqia16i32wxf53wql5"; depends=[data_table lubridate Matrix rbi reshape2]; }; - rbibutils = derive2 { name="rbibutils"; version="2.2.9"; sha256="11pzbqykmn7m9gp5jspfcj6vij865wqf9ry6m3jkihvfj7zhfb5j"; depends=[]; }; + rbi_helpers = derive2 { name="rbi.helpers"; version="0.3.3"; sha256="0jlzfnw3r138inap6dnq0a7cbirs5q18ypxgcb3zfqq5zxkdx276"; depends=[data_table lubridate Matrix rbi reshape2]; }; + rbibutils = derive2 { name="rbibutils"; version="2.2.11"; sha256="10g3fv8ninihjldhvh00yrp260dczhz3q519000jm3wp5w47b945"; depends=[]; }; rbin = derive2 { name="rbin"; version="0.2.0"; sha256="18g6s4m0yc1bzrymk8km553kcwi4vj16b6mxw2lmv48z7243iq87"; depends=[data_table ggplot2]; }; rbioacc = derive2 { name="rbioacc"; version="1.1-0"; sha256="0lmkfr0s90hi06llsa0v4jbcx0jd1dx3qq9h6kb67ws0q6h9y028"; depends=[BH GGally ggmcmc ggplot2 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr zoo]; }; rbioapi = derive2 { name="rbioapi"; version="0.7.7"; sha256="12lwm9x2z9bvnksp6qpqllz2mg45iia4cvv5pqr7rh7p9gwibqsm"; depends=[httr jsonlite]; }; @@ -15014,7 +15106,7 @@ in with self; { rbison = derive2 { name="rbison"; version="1.0.0"; sha256="0g586hsqci4amci10zjq6xpjvxfjr6rv5i63vp85v3z6bkwfamwr"; depends=[crul data_table dplyr ggplot2 jsonlite mapproj plyr sp tibble]; }; rbit = derive2 { name="rbit"; version="1.0.0"; sha256="09ywr711gv0vgfims2vfcxk3rnd0iadzlksil0q9159yarapfc59"; depends=[R6]; }; rblt = derive2 { name="rblt"; version="0.2.4.5"; sha256="1pfg8sgm532czz3lhpx7dmg5zik3bc0p4vdq9s0qk5zgq7nnm9sj"; depends=[data_table dygraphs hdf5r shiny xts]; }; - rbmi = derive2 { name="rbmi"; version="1.2.1"; sha256="1jxbjzf1acgpm8hg7y7rg2jsv94qv6wh4f51wwv3zw1rghfsfmn6"; depends=[assertthat BH Matrix mmrm pkgload R6 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + rbmi = derive2 { name="rbmi"; version="1.2.3"; sha256="1l8jnp24a01s0acv529bmxdbxzalh1i9i8h35ikkagvrhbwss8sb"; depends=[assertthat BH Matrix mmrm pkgload R6 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; rbmn = derive2 { name="rbmn"; version="0.9-5"; sha256="087i0snzfk5ng944pvy3cqnbib270p0sdmmxk9lp4ab6hi0f7618"; depends=[MASS]; }; rbokeh = derive2 { name="rbokeh"; version="0.5.2"; sha256="1h2fpzqf17pw9d09r1g1iyxsj5qma4fsk8vnar7f1z4fjyypvi6q"; depends=[digest gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; rbooster = derive2 { name="rbooster"; version="1.1.0"; sha256="0v524hjp3im94hbf6kbmi4xhqnak135mmpmq1sni1c97dqal2hqy"; depends=[earth Hmisc rpart]; }; @@ -15028,7 +15120,7 @@ in with self; { rcage = derive2 { name="rcage"; version="1.2"; sha256="1xa9hdzl3dkrhzjp3bng9pxip9c0crr6zh6iq5916h78nm5k7bir"; depends=[ClustGeo ff fields ggplot2 gridExtra LaplacesDemon MASS Matrix pracma raster rgeos rlang sf sp]; }; rcaiman = derive2 { name="rcaiman"; version="1.0.8"; sha256="1p1lvkp2a8y0cal543c8qn8aphvr8zz09393nxnag81fd0a9vwy6"; depends=[colorspace filenamer lidR magrittr pracma Rdpack spatial terra testthat]; }; rcanvec = derive2 { name="rcanvec"; version="0.2.1"; sha256="0gsk2cfiysxjw2lrnpl2l524lvhh9nhnyyh79n8p7vykyqj711yn"; depends=[rgdal sp]; }; - rcarbon = derive2 { name="rcarbon"; version="1.4.4"; sha256="0swc8mpmiycpmx4a8scsxbb509gih5s1ddhbgn6n46pqhszqs2lc"; depends=[doSNOW foreach iterators knitr snow sp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; + rcarbon = derive2 { name="rcarbon"; version="1.5.0"; sha256="1d41fi2arsj8v5ccijqzyz55safcjirax9068rsjvr01zpxq6ag8"; depends=[doSNOW foreach iterators knitr sf snow spatstat spatstat_explore spatstat_geom spatstat_linnet spatstat_model]; }; rcartocolor = derive2 { name="rcartocolor"; version="2.0.0"; sha256="08ljaag2mnhz2671zvwji1sp003z94lz30vjidmybm9fp8piqw5g"; depends=[ggplot2 scales]; }; rcbalance = derive2 { name="rcbalance"; version="1.8.8"; sha256="1kxy3nv9f3qk5azp8d6khd7skk9m4704mdimgzabrndrlb5ihyw8"; depends=[MASS plyr rlemon]; }; rcbayes = derive2 { name="rcbayes"; version="0.2.0"; sha256="1qwbpx9snqgaz7gshvyhq9ylsf59grjhx56f7cnq25h2f76km9cc"; depends=[BH dplyr magrittr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools shiny shinythemes StanHeaders tibble tidybayes]; }; @@ -15039,8 +15131,9 @@ in with self; { rcdk = derive2 { name="rcdk"; version="3.7.0"; sha256="070xfs65xs0wjhm6ghhfb4sccjryaypyj07abdr9qb72s3567g18"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; rcdklibs = derive2 { name="rcdklibs"; version="2.8"; sha256="0j8r0aqvdmajglyc3zld1d2g2cggg6i3qms1ghalxxdgph555jzw"; depends=[rJava]; }; rchallenge = derive2 { name="rchallenge"; version="1.3.4"; sha256="0i402p6ccjn10ix5nln30pab5nd78hg5q4ivvgc4i99nx7aq0xpx"; depends=[knitr rmarkdown]; }; - rcheology = derive2 { name="rcheology"; version="4.2.1.0"; sha256="0i4yda90kjfpi9jwqwgrg36qq5h1vm1sb6aq9b61ab80vw7w0nng"; depends=[]; }; + rcheology = derive2 { name="rcheology"; version="4.2.2.0"; sha256="09s6b702kla15bkvbjr9b0a0l9cs9z83f73alspid9k1i42fc765"; depends=[]; }; rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; }; + rciplot = derive2 { name="rciplot"; version="0.1.0"; sha256="1c8r8v5r4agwn26iacrkm2whrrr25y5kyi5x130w42vyxrxjj07c"; depends=[dplyr ggplot2 tibble]; }; rcites = derive2 { name="rcites"; version="1.2.0"; sha256="1lyahgpjskzqlmjnz14kkkrl30by1nzzi02wsf0rfskbdhmwc5in"; depends=[cli curl httr jsonlite]; }; rcitoid = derive2 { name="rcitoid"; version="0.1.0"; sha256="11iqdj1q983w28fh17rqvmhs41ks09b24p408nl7hz4iqg9c7lpi"; depends=[crul curl fauxpas jsonlite]; }; rclipboard = derive2 { name="rclipboard"; version="0.1.6"; sha256="0sb28shhfkpflik78h31736li80gjfzim62911iy3vk9b0szd0vy"; depends=[shiny]; }; @@ -15049,13 +15142,13 @@ in with self; { rcolors = derive2 { name="rcolors"; version="0.1.0"; sha256="19lkwd1wdwq9if957qjgrz9mq6s8x49dig8snivhw9ksffcfy4xp"; depends=[magrittr]; }; rcompanion = derive2 { name="rcompanion"; version="2.4.18"; sha256="0fnfib2dcyyklk5npxchwawdmskcicy9zyg1dqw33vhxyc88lpwb"; depends=[boot coin DescTools lmtest multcompView nortest plyr]; }; rcompendium = derive2 { name="rcompendium"; version="1.0"; sha256="1j6hxf6hdvi90qhlzra0jkgyn7a3q4skj594b7lxg5mfkzs7zr2j"; depends=[clisymbols crayon devtools gert gh gtools renv rmarkdown rstudioapi stringr usethis xfun]; }; - rconfig = derive2 { name="rconfig"; version="0.1.3"; sha256="075rq5bkzdbyxvrs23glhhyl7g69pp2f9h4dkwxkickk893glzy5"; depends=[jsonlite yaml]; }; + rconfig = derive2 { name="rconfig"; version="0.1.5"; sha256="1h7g2b87ff3ga97pc3mrhh3dzxx5pq97wyadqfz46j3h79lhzvkc"; depends=[jsonlite yaml]; }; rcoreoa = derive2 { name="rcoreoa"; version="0.4.0"; sha256="0q5dprz0ag04w265bk7isd2lr61nahf223qza47m0izd9nyi9h8a"; depends=[crul hoardr jsonlite pdftools]; }; rcorpora = derive2 { name="rcorpora"; version="2.0.0"; sha256="1b8xa81mn3afadz77576vda9b0d99f1k096drxrpqd989g993aqy"; depends=[jsonlite]; }; rcrimeanalysis = derive2 { name="rcrimeanalysis"; version="0.4.2"; sha256="1b41f636bkr0mr72klyad4fyx5zf129c9h1523rkfkyxrlf527yx"; depends=[dplyr forecast ggmap htmltools igraph KernSmooth leaflet leafsync lubridate pals raster Rcpp rgdal sp]; }; - rcrossref = derive2 { name="rcrossref"; version="1.1.0"; sha256="1n33skb3mwcn9xfd49p8m72z3kqz8n6dj48d286xdpd0zlcahqbh"; depends=[crul dplyr DT jsonlite miniUI plyr R6 shiny stringr tibble xml2]; }; + rcrossref = derive2 { name="rcrossref"; version="1.2.0"; sha256="0hqvhqmfmbhvxv555x3vjwz7rh4r2cw6wj8p3wq4hcf107r555c0"; depends=[crul dplyr DT jsonlite miniUI plyr R6 shiny stringr tibble xml2]; }; rcrypt = derive2 { name="rcrypt"; version="0.1.1"; sha256="002r5wr0bmqbj014iz8wacj883j6gqcxc786m6p9a7zdrjpx2pqi"; depends=[]; }; - rcssci = derive2 { name="rcssci"; version="0.1.0"; sha256="0pivvzf19ms242lpm8k217iv4apxx02m95zg0hz5j8kgip42r2xj"; depends=[Cairo dplyr ggplot2 pacman patchwork rms segmented survival survminer]; }; + rcssci = derive2 { name="rcssci"; version="0.2.0"; sha256="1kq94mxxadr08ybsql1mdw70g4sl9vb6jmv3rkypscpr6gb8gfxd"; depends=[Cairo dplyr ggplot2 pacman patchwork rms segmented survival survminer]; }; rct3 = derive2 { name="rct3"; version="1.0.4"; sha256="1xm5kni2mnpzby8basmwbm1abg615i4mlf6fn9jr5il94q1bdgly"; depends=[]; }; rcube = derive2 { name="rcube"; version="0.5"; sha256="1162y7fs3fsbb5jj66g9kvxxhggprlifrabqbb9lqm8rrdwhz3r9"; depends=[magrittr]; }; rdacca_hp = derive2 { name="rdacca.hp"; version="1.0-8"; sha256="0fmb8gigihf82gdz4yijfchwcw6s1jz91kfpjp0y6cs412lmq4ga"; depends=[ggplot2 vegan]; }; @@ -15066,7 +15159,7 @@ in with self; { rdd = derive2 { name="rdd"; version="0.57"; sha256="1lpkzcjd18x51wzr4d1prdjfsw5978z6zap65psfs02nszy69nqp"; depends=[AER Formula lmtest sandwich]; }; rddapp = derive2 { name="rddapp"; version="1.3.0"; sha256="1yh5yx0jfvxs566kh4dmx4k9h6gh7n4rvvv8aw4mr52ihisradqm"; depends=[AER DT Formula lmtest plot3D R_utils sandwich shiny sp]; }; rdddr = derive2 { name="rdddr"; version="1.0.0"; sha256="0biq1nxfhkbmay70hfp5yg6zakzcdr7rp0x2zpmyq200cwyyr6lm"; depends=[broom dataverse DeclareDesign dplyr estimatr fabricatr generics ggplot2 prediction purrr randomizr readr rlang tibble tidyr]; }; - rddensity = derive2 { name="rddensity"; version="2.2"; sha256="00xmdy3885j3j5sh3civlgggscr946gh7ibd6namqhbzhsnpwrd3"; depends=[ggplot2 lpdensity]; }; + rddensity = derive2 { name="rddensity"; version="2.3"; sha256="160sxsxqq20s5k9c8vccws17v73ninlpjr9wws9y47204ihxx27r"; depends=[ggplot2 lpdensity]; }; rddi = derive2 { name="rddi"; version="0.1.1"; sha256="19izmky8rwz98i6w76mac9b1sppjdpa48jm33gy38zd3k6k2054j"; depends=[glue rlang xml2]; }; rddtools = derive2 { name="rddtools"; version="1.6.0"; sha256="12lxdpazfhwn5kkzs91qhs0xcky30dj01yp0v5708ahr1ywqdxmd"; depends=[AER Formula ggplot2 KernSmooth lmtest locpol np rdd rdrobust rmarkdown sandwich]; }; rde = derive2 { name="rde"; version="0.1.0"; sha256="1zw9gdh90hl0wc5c0xwl5x7566r611wk73sbqdmpzpswjyyl9aqm"; depends=[clipr]; }; @@ -15085,7 +15178,7 @@ in with self; { rdomains = derive2 { name="rdomains"; version="0.2.1"; sha256="1gpgryfdv4dhv98nfnr15lqq9ndwi8q17rwm5z7j2klgi5d644ld"; depends=[aws_alexa curl devtools glmnet httr jsonlite Matrix R_utils urltools virustotal XML xml2]; }; rdoxygen = derive2 { name="rdoxygen"; version="1.0.0"; sha256="16907969w66xvy62k45rw10qfv4x8z6jkkc6i97vppkgnlvf4d4b"; depends=[devtools]; }; rdpower = derive2 { name="rdpower"; version="2.2"; sha256="0v598jqka5skffbzb4knfmm5hfbg6gmwjgbclv774wrxxn62sj4z"; depends=[rdrobust]; }; - rdrobust = derive2 { name="rdrobust"; version="2.1.0"; sha256="132nxql163r71xw63qbg6g90cigfjmg4svaln247jrlfbwwnvjiq"; depends=[ggplot2 MASS]; }; + rdrobust = derive2 { name="rdrobust"; version="2.1.1"; sha256="18345w89w3phkfp4s59k10iha2ywgnrgdm61f8a9ixvhd3vv2qr0"; depends=[ggplot2 MASS]; }; rdrop2 = derive2 { name="rdrop2"; version="0.8.2.1"; sha256="02rhcq1vn349ddjkqamxb0wjb3z3m4wzkvin1mprcz4fzrjxgbdr"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; }; rdryad = derive2 { name="rdryad"; version="1.0.0"; sha256="00f1qwsbwg5jggm5b83nhk1lxyw272rv2kg77bcwqvlf3074c3mz"; depends=[crul curl hoardr jsonlite mime tibble zip]; }; rdtLite = derive2 { name="rdtLite"; version="1.4"; sha256="0m2fxwz0h4rriw62g2hp20iw6ddbq5l8n80z9xgxk49n6pfm1ywj"; depends=[curl digest gtools jsonlite knitr provViz rlang rmarkdown sessioninfo stringi XML]; }; @@ -15094,7 +15187,7 @@ in with self; { re2 = derive2 { name="re2"; version="0.1.2"; sha256="13cxq6zw66b0wqwv19kkgn8z9kx1p9x1z1fv9cgn1iq7v1br8gm4"; depends=[Rcpp]; }; reReg = derive2 { name="reReg"; version="1.4.4"; sha256="10x4gr41brdnpk2swhh3nlhw1qwirxkphmj7dh5sbc63hnw48ih4"; depends=[BB dfoptim directlabels ggplot2 MASS nleqslv optimx Rcpp RcppArmadillo reda rootSolve scam SQUAREM survival]; }; reactR = derive2 { name="reactR"; version="0.4.4"; sha256="15c0ij3xglsdavkpzgnkbyl5yb39jrn6zhlrdjiwp1m9cnrqzf2w"; depends=[htmltools]; }; - reactable = derive2 { name="reactable"; version="0.3.0"; sha256="0k9h1im0ncz0iv3l7d1y1gghx1i5r52k5cywszk00saz4fdd9r1q"; depends=[digest htmltools htmlwidgets jsonlite reactR]; }; + reactable = derive2 { name="reactable"; version="0.4.1"; sha256="1kcxxlrc6ww70anqrcnrvj7kn0i15cf2ylpaq6fh2kdkyy57d05k"; depends=[digest htmltools htmlwidgets jsonlite reactR]; }; reactablefmtr = derive2 { name="reactablefmtr"; version="2.0.0"; sha256="1r864j8ma1sas2fglw5hdkhf3lxrkri7mf2k5j8cpq7398kgzp94"; depends=[dplyr htmltools htmlwidgets magrittr purrr reactable sass shiny stringr tippy webshot]; }; reactlog = derive2 { name="reactlog"; version="1.1.1"; sha256="1njihrnq1x162nc2wk16kj1l0vpvk8xcdgjvj36arw4z8nv8wpah"; depends=[jsonlite]; }; read_dbc = derive2 { name="read.dbc"; version="1.0.5"; sha256="1vrvxkcrk3iw5am9rsadxzf0wsr7z2mdpa5wb0v9jbhda710b4yf"; depends=[foreign]; }; @@ -15105,7 +15198,7 @@ in with self; { readHAC = derive2 { name="readHAC"; version="1.0"; sha256="0z80ai6xfswwgdfh83l9sq279c97n0wz25bk2l7xfb6w0sndzq53"; depends=[]; }; readJDX = derive2 { name="readJDX"; version="0.6.1"; sha256="19aw7jafgg6d6q5xmsphpkyakad6m1x1062h3nxkmfma9xcy4ns4"; depends=[stringr]; }; readMLData = derive2 { name="readMLData"; version="0.9-7"; sha256="0l752j1jq37j9pdcsbmcb23b5l8fkfsbisfr3yjy3q4rxsphc7k6"; depends=[XML]; }; - readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.1"; sha256="03lnhajj75i3imy95n2npr5qpm4birbli922kphj0w3458nq8g8w"; depends=[base64enc digest XML]; }; + readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.2"; sha256="1kq1v9y013n12ic3dwxxnvncq635w71d6wkpcvcz6dw45bjkc68k"; depends=[base64enc digest XML]; }; readODS = derive2 { name="readODS"; version="1.7.0"; sha256="1hi217ab7hp15jsbzi5ak57cqf8jn2rv78bnn74q72gn9mrfra7n"; depends=[cellranger readr stringi xml2]; }; readOffice = derive2 { name="readOffice"; version="0.2.2"; sha256="0dg7fwxdl41nrjqnxvh9rpz0la99iid0wy51gncjwrh3s85fj2ks"; depends=[magrittr purrr rvest xml2]; }; readSX = derive2 { name="readSX"; version="0.8.3"; sha256="1j04hdn7aqzf0s5zdwzsqckqlnjzag0d83d5b3lq6dq9z3xgjc7d"; depends=[cli readxl rlang]; }; @@ -15130,20 +15223,20 @@ in with self; { readxl = derive2 { name="readxl"; version="1.4.1"; sha256="1ym11mldwj31lgk5av264v8b2zn7fmq5nd30rnm1pchgjizvpgpn"; depends=[cellranger cpp11 progress tibble]; }; readxlsb = derive2 { name="readxlsb"; version="0.1.4"; sha256="1qnfijspx8zwsmr1i6qb7vgaxazmvshq5mcxn79y0r2spszq419i"; depends=[cellranger Rcpp xml2]; }; realtest = derive2 { name="realtest"; version="0.2.1"; sha256="0868ng2vg91c3wsx6c13k7cii2519k1algs8a6pgf4r01jvja5pz"; depends=[]; }; - rearrr = derive2 { name="rearrr"; version="0.3.1"; sha256="1mp0r5rg6mn27pp6f2z5b0r8hsx9spdywxkcx7ba6bjmfqrhqsa5"; depends=[checkmate dplyr lifecycle plyr purrr R6 rlang tibble]; }; + rearrr = derive2 { name="rearrr"; version="0.3.2"; sha256="0maz430czq4dgs7x5yc7wf0kc4p66iaisbg0gj7gzahd5833fwfq"; depends=[checkmate dplyr lifecycle plyr purrr R6 rlang tibble]; }; reasonabletools = derive2 { name="reasonabletools"; version="0.1"; sha256="08i7wy4jic5v9ka7j716lj6p9r55sv46sqrxsy7ad6sgjvrzn0ss"; depends=[]; }; rebird = derive2 { name="rebird"; version="1.3.0"; sha256="1lsmrkp5zfwr9jr26bzw2mk2z4261ylz7qclb0a4j0ma8vrd6f5j"; depends=[assertthat dplyr httr jsonlite]; }; rebmix = derive2 { name="rebmix"; version="2.14.2"; sha256="06sizf7wf63hnc26sp4b4qjndg4bhyxicabrnh7vwp53x3x27pgg"; depends=[]; }; rebus = derive2 { name="rebus"; version="0.1-3"; sha256="0ms3dm6g0fq3jycpgjl7q7kyljxc97cczy2jj0lyviwmipdgjg9d"; depends=[rebus_base rebus_datetimes rebus_numbers rebus_unicode]; }; rebus_base = derive2 { name="rebus.base"; version="0.0-3"; sha256="1n2khszcya9k6379bdkq47xi2nw9jngiwj7z8a14wfswqydczv6y"; depends=[]; }; - rebus_datetimes = derive2 { name="rebus.datetimes"; version="0.0-1"; sha256="09lv41mywm13avxb0xp8x1a2xz50zxazh3lpg27m16d4cgijmhm5"; depends=[rebus_base]; }; + rebus_datetimes = derive2 { name="rebus.datetimes"; version="0.0-2"; sha256="1hq5mr1v8ziikmkncb9ix11877rmzbjhz54nigwbkswbjwj7vhdf"; depends=[rebus_base]; }; rebus_numbers = derive2 { name="rebus.numbers"; version="0.0-1"; sha256="0drgszz0824j49c6jk9ry0cfjky7g843ldlxrx3g2vjp0v7hznj3"; depends=[rebus_base]; }; rebus_unicode = derive2 { name="rebus.unicode"; version="0.0-2"; sha256="185313wh4zpp6addfdr78pjhxzazlfwgsddwk02zrzblf4iwzjdm"; depends=[rebus_base]; }; recapr = derive2 { name="recapr"; version="0.4.4"; sha256="1grp8aczn3qjm8ihn2466v5yay60vwyf1x7jsmihgxlvgwki6dh7"; depends=[MASS]; }; receptiviti = derive2 { name="receptiviti"; version="0.1.2"; sha256="17i9amb20nrxy4lj8f98jfkkpg6hr8lw7j90ngidznyrprlwnwr7"; depends=[arrow curl digest dplyr future_apply jsonlite progressr]; }; recexcavAAR = derive2 { name="recexcavAAR"; version="0.3.0"; sha256="0b91jbgqzkgzvk658ckk639yyz1daa0xql3qgl0kzgqg68d53x20"; depends=[kriging Rcpp]; }; rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; - recipes = derive2 { name="recipes"; version="1.0.2"; sha256="03k7spw5vivj35lwqj8xj259smgc04qxkdimk5ck9yj656d5lyqs"; depends=[cli dplyr ellipsis generics glue gower hardhat ipred lifecycle lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate vctrs withr]; }; + recipes = derive2 { name="recipes"; version="1.0.3"; sha256="0pi7j1jj5dmc5kzx6zkm691xya7dw4fn8c8nb2x3gs8mp14spzhg"; depends=[cli clock dplyr ellipsis generics glue gower hardhat ipred lifecycle lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate vctrs withr]; }; reclin = derive2 { name="reclin"; version="0.1.2"; sha256="0bskmlysc12g5invscr0vvshy8bp1gxjx4wihwbbfzmnk2951qrc"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; }; reclin2 = derive2 { name="reclin2"; version="0.2.0"; sha256="1139fx544hi1g1la81rwndbad5r2wi21g4yj2yh6l8w7m8xbn56z"; depends=[data_table lpSolve Rcpp stringdist]; }; recluster = derive2 { name="recluster"; version="2.9"; sha256="1nz5w4v5hhb3qjwxixc526gqsmr1imw582l9gj2acwar4z9mixjp"; depends=[ape cluster phangorn phytools picante plotrix vegan]; }; @@ -15169,6 +15262,7 @@ in with self; { reda = derive2 { name="reda"; version="0.5.4"; sha256="1lrfbcvxgbbpi7l3vls3rdj8y3w30gg5f1fjcfscmykvp0i01j3d"; depends=[ggplot2 Rcpp RcppArmadillo splines2]; }; redcapAPI = derive2 { name="redcapAPI"; version="2.3"; sha256="1myycwdrlw1405fxc82zd8ps8bhdvf2ffsb91pia5ijf6952v8pf"; depends=[checkmate chron DBI httr labelVector lubridate readr stringr tidyr]; }; reddPrec = derive2 { name="reddPrec"; version="0.4.0"; sha256="0zmkaiivvjq8mcaz310zgjjc7y0wgsqv29bf8nhli5qawaczvb9a"; depends=[fields snowfall]; }; + redditadsR = derive2 { name="redditadsR"; version="0.1.0"; sha256="00kn34d8277f8m4xigr28lpq4s55lvli4xw70g4cbsir7m6ibklv"; depends=[jsonlite]; }; redist = derive2 { name="redist"; version="4.0.1"; sha256="1xmkvj48aqm6shix00c21bvfni6fjs099g40siwyln4cgmqc57c9"; depends=[cli doParallel doRNG dplyr foreach ggplot2 patchwork Rcpp RcppArmadillo RcppThread redistmetrics rlang servr sf stringr sys tidyselect vctrs]; }; redistmetrics = derive2 { name="redistmetrics"; version="1.0.2"; sha256="1jq4qz43j7qjzx2pac3i1p2h331pgj8z9zfg4s1dhn56rwscn8f5"; depends=[cli doParallel dplyr foreach geos magrittr Rcpp RcppArmadillo rlang sf wk]; }; redland = derive2 { name="redland"; version="1.0.17-16"; sha256="1nzxyczsz274751z48glh8qzv1v9rdv3raq6whyp63nsi2xdri90"; depends=[roxygen2]; }; @@ -15208,7 +15302,7 @@ in with self; { rego = derive2 { name="rego"; version="1.5.2"; sha256="11c8hanfm8n9n8h7a2g3j9x2zy5njfwf19w7d0xydi9pklppy6gc"; depends=[Rcpp]; }; regplot = derive2 { name="regplot"; version="1.1"; sha256="048w0hnd2y8k27msjhw2g4ygck6i09698qk24sz7563z82gvj52w"; depends=[beanplot lme4 sm survival vioplot]; }; regport = derive2 { name="regport"; version="0.3.0"; sha256="0mbx1ja1mbhd0z7jcxjrs6b8ldp87ym21fyqigx3w295kh9zm0xx"; depends=[broom_helpers data_table dplyr forestploter glue parameters R6 rlang survival]; }; - regr_easy = derive2 { name="regr.easy"; version="1.0.1"; sha256="1mdp3c0hn0y71ygnpr7jg3rifm77a2x8kmza34gln7w808avdxvf"; depends=[ggplot2 stargazer]; }; + regr_easy = derive2 { name="regr.easy"; version="1.0.2"; sha256="18b4lznnyqyz4y5ig1dp21kmxqc488c199ss5j91i2v5d1qj2sk8"; depends=[ggplot2 stargazer]; }; regrap = derive2 { name="regrap"; version="1.0.1"; sha256="0yrxhlam7jmxwk1v53kllv6ja1m938symfvqp84xb278r3wb1wv7"; depends=[mvtnorm]; }; regress = derive2 { name="regress"; version="1.3-21"; sha256="0mkf1dyg0r09ifdvmc3g6b0q0h819j0kfh1cb33r1vsr8yfjvgbz"; depends=[]; }; regressoR = derive2 { name="regressoR"; version="2.0.1"; sha256="0h5f085vpmvjzrr3wiq7gvj0cma41szikmp8iaczhc04cdj6k18b"; depends=[DT e1071 echarts4r gbm glmnet golem htmltools kknn neuralnet pls randomForest rlang rpart rpart_plot shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs]; }; @@ -15218,7 +15312,6 @@ in with self; { regsubseq = derive2 { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; }; regtomean = derive2 { name="regtomean"; version="1.1"; sha256="0xw0pany9cwfxdn26ckk6fdjnqx1916288mhphsnvwns3383nq4k"; depends=[effsize formattable mefa plotrix plyr sjlabelled sjmisc sjPlot]; }; regtools = derive2 { name="regtools"; version="1.7.0"; sha256="00g50dcfy93rgy9a2l24rsjgwk1575gxhpg9dy5r9928nwwd6lx9"; depends=[car data_table FNN glmnet gtools MASS mvtnorm polyreg R_utils rje sandwich text2vec]; }; - regweight = derive2 { name="regweight"; version="1.0.2"; sha256="1ziqii9xlp86n6ga99glwnh2kf6pkm8m326yra40yf2w3h180pbm"; depends=[checkmate dplyr ggplot2 glue gt lpdensity rlang scales tidyr tidyselect]; }; rehh = derive2 { name="rehh"; version="3.2.2"; sha256="1kgabmg0vq8psdhkfcpdv3iy8gj5hmqzhb8bs8rld49nhnnbqs2x"; depends=[rehh_data]; }; rehh_data = derive2 { name="rehh.data"; version="1.0.0"; sha256="1jkvwmnnmfa7iyvrabgcfzw3vfzx0dlgq47s6yf4zayi437v4di0"; depends=[]; }; rehydratoR = derive2 { name="rehydratoR"; version="0.5.2"; sha256="1d94m9hv1l72l9lph2vzbq4qqbfcgyhv2qk82p9vb8l2ckavjzvv"; depends=[dplyr jsonlite rtweet tibble]; }; @@ -15231,7 +15324,7 @@ in with self; { reldist = derive2 { name="reldist"; version="1.7-1"; sha256="17kbqqapqmckghv7jizibmicv3bzbycfr3mz4xg3yjp3c2bap4r6"; depends=[densEstBayes mgcv]; }; relen = derive2 { name="relen"; version="1.0.1"; sha256="0br7c3j30a1yc61pyinmk5lvk8zw9rivd0z2096g6crgmbzix8ml"; depends=[]; }; relevance = derive2 { name="relevance"; version="1.3"; sha256="185fb5vjq1l6q1yz4qyvm2qli1xpp3wc4d1s17y28daljmdijlw8"; depends=[]; }; - relevent = derive2 { name="relevent"; version="1.1"; sha256="10wy6qbg91bq8cs5fas50nnfw80rpsgr8bqpfbsxcmsh43ilpgg9"; depends=[coda sna trust]; }; + relevent = derive2 { name="relevent"; version="1.2"; sha256="1hv86wfp5x177z8ik4fi7x3hx49i66m6qv459dvij8jypf45rki0"; depends=[coda sna trust]; }; relgam = derive2 { name="relgam"; version="1.0"; sha256="0bfsk2pc3vdk8wgdfpz80x0f9p0z37sq114swqn6z11p298hwf2x"; depends=[foreach glmnet]; }; reliabilitydiag = derive2 { name="reliabilitydiag"; version="0.2.1"; sha256="1gi1ym48fl0n5migaav8sqz62xa567c68p5f3w9l1y3pqdqrw0qw"; depends=[bde dplyr ggExtra ggplot2 magrittr purrr rlang tibble tidyr vctrs]; }; relimp = derive2 { name="relimp"; version="1.0-5"; sha256="0ydn82g8xdqzhf34187080bbpcpw1zdjbj2i3dv1d6d35vvprb5c"; depends=[]; }; @@ -15239,17 +15332,17 @@ in with self; { relsurv = derive2 { name="relsurv"; version="2.2-8"; sha256="07wqihyzg6fsvb6n28w3xag66q3rxfv154kqpg2hxj348c58chgb"; depends=[date ggplot2 pammtools scales survival]; }; rem = derive2 { name="rem"; version="1.3.1"; sha256="1q4p26irhhl1lvc0ydv9wmng1y635zm16szpl7gwq1kyn2p90rai"; depends=[doParallel foreach Rcpp]; }; rema = derive2 { name="rema"; version="0.0.1"; sha256="15b68pynac9ff9bina0mf94absvfsn21xcdmvd4lbl97pxwj83ph"; depends=[progress Rcpp Rdpack]; }; - remaCor = derive2 { name="remaCor"; version="0.0.9"; sha256="1rddxwhwn5m34p1ga2i42sfv6m9lmj4ffsn3jv2f9g82nh6q6gv3"; depends=[clusterGeneration ggplot2 mvtnorm Rdpack reshape2 RUnit]; }; + remaCor = derive2 { name="remaCor"; version="0.0.11"; sha256="0hhk1zrjz6sxg219h9ca7jya0vc8dmrvwaddajkcdns6bv3rj1km"; depends=[clusterGeneration ggplot2 mvtnorm Rdpack reshape2 RUnit]; }; remap = derive2 { name="remap"; version="0.3.0"; sha256="020a7ii90j8wh6f98jmryky6b4xcv4vqd47kah4yqk42z22wixb7"; depends=[sf units]; }; rematch = derive2 { name="rematch"; version="1.0.1"; sha256="0y3mshvpvz9csmq8hk8jbabx4nxlv5sckvfzvm6920ndg34xw2d4"; depends=[]; }; rematch2 = derive2 { name="rematch2"; version="2.1.2"; sha256="1fzpz8vhghw8ygwg6rsvfy3783pqk7ch029i5851lwypkplvz77y"; depends=[tibble]; }; remedy = derive2 { name="remedy"; version="0.1.0"; sha256="1lsa5az9jwy4ngjmfzcb7qj4wm8phsgajlnp5kwa4nav0g1dhb4s"; depends=[knitr rematch2 rstudioapi]; }; remindR = derive2 { name="remindR"; version="0.0.1"; sha256="0b27v2qm3z8l9vcng8f0rkphjidxkw5n017ysflx180qjizqq632"; depends=[assertthat]; }; - remiod = derive2 { name="remiod"; version="1.0.1"; sha256="0pqfq5k546b435mglyzw5cc1vclsp8w1gxy0a3g3bjjxga3dkq17"; depends=[coda data_table doFuture foreach future ggplot2 JointAI mathjaxr Matrix mcmcse ordinal progressr rjags survival]; }; + remiod = derive2 { name="remiod"; version="1.0.2"; sha256="1darwljspxm6mkkp0d7xx375kvhlfwpzxc93yr2mb0mwi2877yi9"; depends=[coda data_table doFuture foreach future ggplot2 JointAI mathjaxr Matrix mcmcse ordinal progressr rjags survival]; }; remote = derive2 { name="remote"; version="1.2.1"; sha256="1ihzjxbvas7396cwsi9am4pl94naxa9dnhbnh8k0l5p4a50mk33w"; depends=[gridExtra latticeExtra mapdata raster Rcpp scales]; }; remoter = derive2 { name="remoter"; version="0.4-0"; sha256="1a7m63l8phv5jnazvdqdrqkaqjwqzaac5y4jm2jn0ypy4n8jvkfl"; depends=[argon2 getPass pbdZMQ png]; }; remotes = derive2 { name="remotes"; version="2.4.2"; sha256="05m5dgv0nba5vhjbdkd8z5lbhpfxgkw31j58am7vz1d44igqgvzj"; depends=[]; }; - rempsyc = derive2 { name="rempsyc"; version="0.0.9"; sha256="0hm0d2743x1g79n6cl3mhffhhxxq4ia8104frxpc6c3fxnr0fjj0"; depends=[boot car dplyr effectsize flextable ggplot2 ggrepel ggsignif lmtest qqplotr rlang]; }; + rempsyc = derive2 { name="rempsyc"; version="0.1.0"; sha256="1by47r69frid5skbm46msrpif22h7vsq6fjwqydp7cg7h901q3sz"; depends=[dplyr effectsize flextable insight performance rlang]; }; remss = derive2 { name="remss"; version="1.0.1"; sha256="15s3qvcfyp1880ddzpvgiw3q5av21052iy1vnpw0hib5pb7xfkfb"; depends=[survival]; }; renderthis = derive2 { name="renderthis"; version="0.2.0"; sha256="1hvqwq2w30j29pwjm498mza9zxg8ga5bizm795hmdbz1k30m4j3p"; depends=[cli digest fs jsonlite magick pagedown progress quarto rmarkdown withr xaringan zip]; }; renpow = derive2 { name="renpow"; version="0.1-1"; sha256="0kbfpzr17fvf5zzxpzdhvfmrqmlkba2w3rzxl5q5ac1w3h75gfhc"; depends=[]; }; @@ -15264,7 +15357,7 @@ in with self; { repfdr = derive2 { name="repfdr"; version="1.2.3"; sha256="0jpk44arg1jib0h2w90h851bs5cd1ss32fab9bfvf9iir2jk8985"; depends=[Rcpp]; }; replacer = derive2 { name="replacer"; version="1.0.2"; sha256="1vpa3v64nsxqalw9ca6zysfaqii797mm3qsn4cfdi7q72nl46pr1"; depends=[data_table]; }; replicateBE = derive2 { name="replicateBE"; version="1.1.3"; sha256="079fkrp9jhp3qr5a1wvz66ldqxbj2pqarmxq5f1adqnyym2aw684"; depends=[lmerTest nlme pbkrtest PowerTOST readxl]; }; - replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-3"; sha256="1h680xn403fm98ywyxqwhq7llsaghgd4ffjq7r5bdb1r9ahvxrv0"; depends=[spatstat spatstat_core spatstat_geom spatstat_utils]; }; + replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-4"; sha256="04rppb9fvympa5zgasjb8ybk8n3pb2nlvmwpdx3lsvfcpsmnibmg"; depends=[spatstat spatstat_explore spatstat_geom spatstat_utils]; }; replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; }; repmis = derive2 { name="repmis"; version="0.5"; sha256="0z5mjbsl24yjbl0aawr35grcal44rf2xbwv1hy7bdkms94ix79b5"; depends=[data_table digest httr plyr R_cache]; }; repmod = derive2 { name="repmod"; version="0.1.7"; sha256="1rpmvxfw2m3bisi5g90sdfm8wmwg2gv9rzblq9kl70kvrs8pj1qs"; depends=[boot flextable lme4 lmerTest officer xtable]; }; @@ -15274,7 +15367,7 @@ in with self; { reportROC = derive2 { name="reportROC"; version="3.6"; sha256="1hfgyikd7l14yfr2cnabjbb67svydj1snfcagc4w4fxhdwqhd3f2"; depends=[pROC vcd]; }; reportReg = derive2 { name="reportReg"; version="0.3.0"; sha256="0qwrpn61x69hmgln5fpc58dqfa3pba0lgjjyj0f3fh96wc9jyhq1"; depends=[nlme]; }; reportRmd = derive2 { name="reportRmd"; version="0.0.1"; sha256="1vxjb4sq353nzv3q3cymp02g6y6z338xv29v0nf0j7v6kik0xzq0"; depends=[aod cmprsk geepack ggplot2 ggpubr gridExtra kableExtra knitr MASS pander plyr rlang scales survival]; }; - reporter = derive2 { name="reporter"; version="1.3.7"; sha256="0snxidccxc65x7bpj4hcidphpr74wpx9dybwr4k0bshgdgs1nq1k"; depends=[common crayon fmtr glue jpeg stringi withr zip]; }; + reporter = derive2 { name="reporter"; version="1.3.8"; sha256="1m7bjk58fj8gzckn803zz8yz5hjj4ccyz5l1dnd14ccp3r6im5lp"; depends=[common crayon fmtr glue jpeg stringi withr zip]; }; reportfactory = derive2 { name="reportfactory"; version="0.4.0"; sha256="0mkk9gyd3l6m33mkc6w3fmgrzc6na03kwxxwgn0zb83bjpmyyl1z"; depends=[callr fs knitr rmarkdown rprojroot rstudioapi yaml]; }; reportr = derive2 { name="reportr"; version="1.3.0"; sha256="0zynplxqvbmf23cm2rsz3wz2jx6mv55z94mn1k44ny3lx625cnpw"; depends=[ore]; }; reporttools = derive2 { name="reporttools"; version="1.1.3"; sha256="0sx89qb66lczmzcsybxac4razcncf2xcxr0vfkvb3f8jqc7xwcik"; depends=[xtable]; }; @@ -15283,15 +15376,14 @@ in with self; { represtools = derive2 { name="represtools"; version="0.1.3"; sha256="00hnvzkkcl9d3k115i5l9gs0wah5d11amn7q62m1j158lkqlcfza"; depends=[whisker]; }; reprex = derive2 { name="reprex"; version="2.0.2"; sha256="14khx09yzn97xhags48lvym1g37h1l2ymvw6r1jlldhjc7i1cnx8"; depends=[callr cli clipr fs glue knitr lifecycle rlang rmarkdown rstudioapi withr]; }; reproducer = derive2 { name="reproducer"; version="0.4.2"; sha256="0ip7zh8jnjdwl0lawh60v1rcl0dvrxb6dbrlldb6l1vzbn530him"; depends=[dplyr GetoptLong ggplot2 gridExtra httr jsonlite lme4 MASS metafor openxlsx readr reshape stringr tibble tidyr xtable]; }; - reproducible = derive2 { name="reproducible"; version="1.2.10"; sha256="0agphafd2khv2xk0fwqr2y3imn8fzwa3crpqbp4n3i9qkpmkmvpw"; depends=[data_table DBI digest fpCompare glue lobstr magrittr raster Require rlang RSQLite sp]; }; reproj = derive2 { name="reproj"; version="0.4.3"; sha256="0bcg5bz2sl4d31iwr55nwr85p1jna9fpbcli26lf04dwznwmx0rl"; depends=[crsmeta PROJ proj4]; }; repurrrsive = derive2 { name="repurrrsive"; version="1.0.0"; sha256="1nmy88h2bfv2bad282kbrmnkjx9d8klgzv4mm8nspm049s09ydmz"; depends=[tibble]; }; reqres = derive2 { name="reqres"; version="0.2.5"; sha256="1j8gxacbfnaqvrhjqy851yb8shc73issv08yca6mbnx6aq34wcrd"; depends=[assertthat brotli jsonlite R6 stringi urltools webutils xml2]; }; request = derive2 { name="request"; version="0.1.0"; sha256="1q7zd6q00gdqmgq7s7nq1ixmns8zn2amr5zah9rwnsn8dkllj9yh"; depends=[curl httr jsonlite lazyeval magrittr R6 whisker]; }; - requiRements = derive2 { name="requiRements"; version="0.0.1"; sha256="17afbpny5j2rssi173k7sxi9q2syskjh8h0h89z24dqsbh3947mz"; depends=[remotes]; }; + requiRements = derive2 { name="requiRements"; version="0.0.2"; sha256="1y98fdqrql1jg18jqwcxwn511jl5ccv3w12q36gc488m3ym1qcyc"; depends=[remotes]; }; requireR = derive2 { name="requireR"; version="1.0.0.1"; sha256="192l7i3q7s2a6n737an3fn258agjsdzh0q2w0vc8jbz7v4f3i92d"; depends=[]; }; rerandPower = derive2 { name="rerandPower"; version="0.0.1"; sha256="1vk0lrd7hc499prshj3dfyyn2iaz9z6916xsw31ax1l5mipys4mk"; depends=[Runuran]; }; - rerddap = derive2 { name="rerddap"; version="1.0.0"; sha256="13fl8d5x6gmnd1m2x3byikdyy8pv96nikh4nnbd6p8jamxcyjbrc"; depends=[crul data_table digest dplyr hoardr jsonlite ncdf4 tibble xml2]; }; + rerddap = derive2 { name="rerddap"; version="1.0.1"; sha256="1fw678w5jyxlkpxfg88w0lxfyvgqwj4qffqn0hi5wzzysz70y0x7"; depends=[crul data_table digest dplyr hoardr jsonlite ncdf4 tibble xml2]; }; rerddapXtracto = derive2 { name="rerddapXtracto"; version="1.1.3"; sha256="0c8cq7hrc10i758ywwf4brwdk1082biiwzl3h2lcn54fdmj7pkm9"; depends=[abind dplyr ggplot2 httr maps ncdf4 parsedate plotdap readr rerddap sf sp]; }; resample = derive2 { name="resample"; version="0.6"; sha256="0rajp5kmr8qgwzhy7wfmhm7fllk9ywm7hz44f5ws94lcn44q158v"; depends=[]; }; resampledata = derive2 { name="resampledata"; version="0.3.1"; sha256="1nxjqvxxvycccmh1n7lpc4k8zmwnciicfr5rzfid1icij5fzw3ak"; depends=[]; }; @@ -15299,19 +15391,20 @@ in with self; { rescue = derive2 { name="rescue"; version="1.0.3"; sha256="0wq4ka1a7yhbjwr99ngykhn2r3czn3rqi63r6jn46pz15vnicwad"; depends=[data_table dbscan igraph irlba Matrix reticulate]; }; resemble = derive2 { name="resemble"; version="2.2.1"; sha256="1r1wanqwb7i9dr1himdgp9sl5c0582rixlf240rczfr7c4skn5mp"; depends=[data_table foreach iterators lifecycle magrittr mathjaxr Rcpp RcppArmadillo]; }; reservoir = derive2 { name="reservoir"; version="1.1.5"; sha256="1qvjq8j2gxp6b8m3k3822f9na8a1kbwzzsmq70m763dcq293rgiz"; depends=[gtools]; }; + reservr = derive2 { name="reservr"; version="0.0.1"; sha256="1p6k561hj4127g1mi5xwic8zmnj3mvklpc4a38ki5cgvw84kb6xa"; depends=[assertthat BH generics glue keras matrixStats nloptr numDeriv purrr R6 Rcpp RcppArmadillo RcppParallel rlang]; }; resevol = derive2 { name="resevol"; version="0.3.0.1"; sha256="13whjldpidagyaqh2s7isvs8qms6zw82v067h4zyrzfzh6q3xsa8"; depends=[]; }; reshape = derive2 { name="reshape"; version="0.8.9"; sha256="0j203qmc076x5lp6q2xi4dq4xdb73jmsa42rpxp1c37knnrph4br"; depends=[plyr]; }; reshape2 = derive2 { name="reshape2"; version="1.4.4"; sha256="1n0jrajpvc8hjkh9z4g8bwq63qy5vy5cgl2pzjardyih4ngcz3fq"; depends=[plyr Rcpp stringr]; }; resourcer = derive2 { name="resourcer"; version="1.3.0"; sha256="1glsmv5r7fgyn8sz8mk1i4n160hj02hyksncj8hgml3k5iips10s"; depends=[httr R6]; }; - respR = derive2 { name="respR"; version="2.0.2"; sha256="0670hy7gg8bbjkjqcvchm83jr57725r8szix66mqggwx0xwjcxj0"; depends=[data_table dplyr glue lubridate magrittr marelac purrr readxl roll segmented stringr xml2]; }; + respR = derive2 { name="respR"; version="2.1.0"; sha256="0xq34bv6r88rr9b3gfwqj8d8m9jqz1ryv80r4anj212fbblbji58"; depends=[data_table dplyr glue lubridate magrittr marelac purrr readxl roll segmented stringr xml2]; }; respirometry = derive2 { name="respirometry"; version="1.3.0"; sha256="1ffhkvf8a8zhkysghd636k47bl7k5bdwkkg4m0pr1zlxpfrif82c"; depends=[birk lubridate marelac measurements minpack_lm PKNCA seacarb segmented]; }; responsePatterns = derive2 { name="responsePatterns"; version="0.1.0"; sha256="0iyx35kq82w18v8c7lfz7x31c2cgywn4xh8hg0ad3gsdygadq8hq"; depends=[]; }; restatapi = derive2 { name="restatapi"; version="0.13.3"; sha256="0560y2pr69pm4m5dm2xhm549rspxwhryprxhfvhzv0zpn4df01di"; depends=[data_table rjson xml2]; }; restaurant = derive2 { name="restaurant"; version="0.1.0"; sha256="1dr9nw5xkll1wnra2xi8dg2yiv85nibdg1i9lsn44v7cgr9vb32j"; depends=[]; }; - restez = derive2 { name="restez"; version="2.1.2"; sha256="13h84qxfpmq6mfa2xkaimjisz71jy4fbap8y8zdla43zlyhnrvv6"; depends=[ape assertthat cli crayon curl DBI duckdb fs rentrez stringi]; }; + restez = derive2 { name="restez"; version="2.1.3"; sha256="1q008ykk75h19zqnkv339qx7zb7vmab8f9ywvr8qb7l1n3yxah76"; depends=[ape assertthat cli crayon curl DBI duckdb fs rentrez stringi]; }; restfulr = derive2 { name="restfulr"; version="0.0.15"; sha256="14p6h0gjknqy5z2fprxw7waf4p0cd2qmp18s7qig4ylqn8gqzzs0"; depends=[RCurl rjson S4Vectors XML yaml]; }; restimizeapi = derive2 { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; }; - restoptr = derive2 { name="restoptr"; version="1.0.2"; sha256="1dx1ksymil7mbdkargmhdnzp5x8hnjlxznxhxbqksz3iw6549503"; depends=[assertthat crayon magrittr rJava terra units]; }; + restoptr = derive2 { name="restoptr"; version="1.0.3"; sha256="0ksvzpikhbxjass2kbl70s5jjras2ylldnw3bgwz9499vbpn9raa"; depends=[assertthat crayon magrittr rJava terra units]; }; restorepoint = derive2 { name="restorepoint"; version="0.2"; sha256="0pjp5dvycvfg75hhj8lrr2lrjn6n6bqj0ziwyd87lyi15b9j8w4s"; depends=[]; }; restriktor = derive2 { name="restriktor"; version="0.3-500"; sha256="17a56mdxx1ss9pb628dz44y5q5vr2q3yg2lr6yj9nxz0k3pwqvv3"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; }; resumer = derive2 { name="resumer"; version="0.0.5"; sha256="0k3s2i102hvsag7jiahgfpjc09646xjpxcpv5x3d91ch3xipdc0b"; depends=[dplyr rmarkdown useful]; }; @@ -15325,7 +15418,7 @@ in with self; { retry = derive2 { name="retry"; version="0.1.0"; sha256="1yfcfvszfjnvvnjcywgchyiyj3jk9nmvk3h40g6bc24xapfkfl2p"; depends=[later rlang]; }; reutils = derive2 { name="reutils"; version="0.2.3"; sha256="09dhf4s7wz3anrkzqi16abx64gk8ck2142kfd8pv71mjy3x548l7"; depends=[assertthat jsonlite RCurl tibble XML]; }; reval = derive2 { name="reval"; version="3.1-0"; sha256="1a2dmcfmnyzpfkyir3g1sz6s8dan2lzapq8v1dph5znmascv1180"; depends=[dplyr purrr rlang]; }; - revdbayes = derive2 { name="revdbayes"; version="1.4.9"; sha256="1m9xsqhgkx47wa4ya6f4yagyzjvrz3br9800h5zpaxj7smd86lbd"; depends=[bayesplot exdex Rcpp RcppArmadillo rust]; }; + revdbayes = derive2 { name="revdbayes"; version="1.5.0"; sha256="16dlsc5fqbsijnq3rlvvdd2bdyvx05fhzz7cbazfdxl3akpsc136"; depends=[bayesplot exdex Rcpp RcppArmadillo rust]; }; revealedPrefs = derive2 { name="revealedPrefs"; version="0.4.1"; sha256="1m8y1mj39bnf9q0n9mi0ashvb79lksx5dfkxb04qj2h5kkyxg49g"; depends=[pso Rcpp RcppArmadillo]; }; revealjs = derive2 { name="revealjs"; version="0.9"; sha256="0h4csxrcl1rzmj3g01nf0mr990zc8swrf4jvmxwqsyzx9v2cqbnc"; depends=[rmarkdown]; }; reveneraR = derive2 { name="reveneraR"; version="0.1.2"; sha256="0l5l9lqwisphjpf2ni0c0a3cg4xpkxy3sk4nvj93f6pra2fmg4rg"; depends=[dplyr httr jsonlite magrittr purrr tibble tidyr tidyselect]; }; @@ -15345,6 +15438,7 @@ in with self; { rfVarImpOOB = derive2 { name="rfVarImpOOB"; version="1.0.3"; sha256="1f0ljy51xqqrncdg4xpic6ir8zlgvp952pr0s217v7ybgdzs42v6"; depends=[dplyr ggplot2 ggpubr magrittr randomForest ranger titanic]; }; rfacebookstat = derive2 { name="rfacebookstat"; version="2.8.0"; sha256="08hffwvysvh13ayj2326nmybrz0x3xa5g7l66d40j3cwzd29hiaq"; depends=[dplyr httr jsonlite pbapply purrr stringr tidyr tidyselect]; }; rfacts = derive2 { name="rfacts"; version="0.2.1"; sha256="0h2ryyl5zc3pxi85y0qwadfz7sdzz0m6ilwzabw317sb0z5lms5b"; depends=[digest fs tibble xml2]; }; + rfars = derive2 { name="rfars"; version="0.2.0"; sha256="1shw96m11l9119ngrsc6p4l5i2f5vfd0snj75jjwpjl8gx4m58fv"; depends=[data_table downloader dplyr janitor lubridate magrittr readr rlang stringr tidyr tidyselect timetk]; }; rfieldclimate = derive2 { name="rfieldclimate"; version="0.1.0"; sha256="1s7awczna9dxdq97sr5fsbs4qv7rx4wi2z3inwdp33md1bvyq4i7"; depends=[digest dplyr httr jsonlite lubridate magrittr purrr tidyr]; }; rfigshare = derive2 { name="rfigshare"; version="0.3.8"; sha256="10shwl1y9220m7ld5w9fjsjzy5yg8myrz9cz97ps9z2bw7bvka5j"; depends=[ggplot2 httpuv httr RJSONIO XML yaml]; }; rfinterval = derive2 { name="rfinterval"; version="1.0.0"; sha256="1z7v0sbql6g2h3fr1268nj79rbx1d33hjfaraxhbikrjgb8mbp0w"; depends=[MASS ranger]; }; @@ -15354,7 +15448,7 @@ in with self; { rfishnet2 = derive2 { name="rfishnet2"; version="0.2.0"; sha256="0g90h4353kp7szv3971kb4l5x3x08qx4f9ln85n5g3b3zdg77dkz"; depends=[dplyr ggplot2 pracma rworldmap sf]; }; rflashtext = derive2 { name="rflashtext"; version="0.1.0"; sha256="0200a25gmb1ax96w2m8069s154prvahqb0vczw4ifhcb52i0fsxp"; depends=[R6]; }; rflexscan = derive2 { name="rflexscan"; version="1.0.0"; sha256="1azjdri1dnxqd128p3iya1x36bbhhrckmj08rp23jzfi5zd71c8s"; depends=[igraph Rcpp rgdal sp]; }; - rflsgen = derive2 { name="rflsgen"; version="1.2.0"; sha256="1ixpi6cr6nv6wkjr0ijv79ivzfyn66y2gylhpay6ndzki7ylh57k"; depends=[checkmate jsonlite rgdal rJava terra]; }; + rflsgen = derive2 { name="rflsgen"; version="1.2.1"; sha256="0cfvbzc9a09738ygrq5jsjniblb8slfvmnscgk7jx0dprgcxj7yn"; depends=[checkmate jsonlite rJava terra]; }; rfm = derive2 { name="rfm"; version="0.2.2"; sha256="1s8h9ll4l5xq3m7ib83zrab49p5q4wclk8qiy2hgjr2hq1sb7wak"; depends=[dplyr ggplot2 ggthemes lubridate magrittr RColorBrewer rlang tibble tidyr xplorerr]; }; rfoaas = derive2 { name="rfoaas"; version="2.3.2"; sha256="03rz1cas0anmfpnax66nr3bsiqgkq02wbvslvqc0q9ayl6p02avh"; depends=[httr]; }; rfordummies = derive2 { name="rfordummies"; version="0.1.6"; sha256="01xv6ds3h8gvi1wi5hgy3r1dhi0767mcgsnshvhva3bnvf1a8398"; depends=[]; }; @@ -15362,15 +15456,17 @@ in with self; { rfvimptest = derive2 { name="rfvimptest"; version="0.1.2"; sha256="0mfpwa0f3pjvjjs5q4g74ljkzs382dzr86aayqf2nnhsaz24aphq"; depends=[party permimp ranger]; }; rfviz = derive2 { name="rfviz"; version="1.0.1"; sha256="1pxr9bsqg27vgbngj89hhjq0gyzgdlg69rz6kzvvd8gclg42wisv"; depends=[loon randomForest]; }; rgabriel = derive2 { name="rgabriel"; version="0.9"; sha256="1za8njmasl7kmmiqgxhr8k2p1kygkadkqgim9wgyjkcnzljg46kb"; depends=[]; }; - rgbif = derive2 { name="rgbif"; version="3.7.3"; sha256="0d8cdqrr6idwhkqqqjylix66h7b4pfx53c2ywaj8adcsv0051dhz"; depends=[conditionz crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble whisker wk xml2]; }; - rgdal = derive2 { name="rgdal"; version="1.5-32"; sha256="1vbkyhw8nd7dw1r53qisphav31x6zvpbzilvnlvbjbj9hzhs90s5"; depends=[sp]; }; + rgbif = derive2 { name="rgbif"; version="3.7.4"; sha256="0q0y0jk4lx5s47a7fp2nifjp2nimrr8rjny451863vq6gij80zcz"; depends=[conditionz crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble whisker wk xml2]; }; + rgdal = derive2 { name="rgdal"; version="1.6-2"; sha256="0g83r9lzq79hs7mk31kqym1sjqnmk53j3nikrn2vk257v854pavy"; depends=[sp]; }; rgdax = derive2 { name="rgdax"; version="1.2.1"; sha256="01hpyyhb6jcw9w0q9h4ghgh4cbba27mfl9zdv4vv4ppakvl80czl"; depends=[digest httr jsonlite plyr RCurl]; }; rgee = derive2 { name="rgee"; version="1.1.5"; sha256="1yq0k935p23qgwaffda8zk5p5546z5i27kivyqf8hg461cn73b3x"; depends=[cli crayon jsonlite leafem leaflet magrittr processx R6 reticulate rstudioapi]; }; + rgeedim = derive2 { name="rgeedim"; version="0.1.0"; sha256="0s60rgm8j7s4vd8djfx0m4sqs9xwqqnk5lvrbgbr39g3y9ads41n"; depends=[jsonlite reticulate]; }; rgen = derive2 { name="rgen"; version="0.0.1"; sha256="0gl82v09q1ha58wd1014s46wzkx1yf348bc7jkl6s4qdc6c4vsb8"; depends=[]; }; rgenius = derive2 { name="rgenius"; version="0.1.0"; sha256="1gpglnhicyv16ym224wzaw52w9xr63slm75wvidl3z14izzyy7ga"; depends=[doParallel dplyr foreach httr purrr rvest stringr tibble]; }; rgenoud = derive2 { name="rgenoud"; version="5.9-0.3"; sha256="0pxmisc0vsdchqaaxqcblnhhviizgcwhvsbklr3rq7vrmn6hlmii"; depends=[]; }; rgeoda = derive2 { name="rgeoda"; version="0.0.9"; sha256="1yl2liin9fvcry2wi3223kq6xdxm6mkkkdjayp9gizllnhpf71z8"; depends=[BH digest Rcpp sf]; }; rgeolocate = derive2 { name="rgeolocate"; version="1.4.2"; sha256="08dps73sdlhsyzkykw3y9ckxazznymfsx63p9rcssghb2silw9xw"; depends=[httr Rcpp]; }; + rgeomstats = derive2 { name="rgeomstats"; version="0.0.1"; sha256="1fy5fvkifv80sf3x0d2y3vyv7adn0h57q1hvip1phcvxg8p5prff"; depends=[cli purrr R6 Rdpack reticulate rlang]; }; rgeopat2 = derive2 { name="rgeopat2"; version="0.3.9"; sha256="0l0sqkvjkzp4lmyk55l7zc02y04sa43cps47005gq8c38kyks45k"; depends=[readr sf stringr]; }; rgeoprofile = derive2 { name="rgeoprofile"; version="0.2.2"; sha256="1nk3qzwcvvq3n1da480zk047wl738fjyvarakm00wwrbnb3ax70j"; depends=[geosphere leaflet pals RANN raster sp spatstat_geom splancs]; }; rgeos = derive2 { name="rgeos"; version="0.5-9"; sha256="1m73y0nwrdwsjrl48c4fg1kdqnh79835brnmxv9ak01ndbzcp45b"; depends=[sp]; }; @@ -15395,9 +15491,9 @@ in with self; { rgw = derive2 { name="rgw"; version="0.3.0"; sha256="0hzkajmvqkmv6c238rdgyc6g16h96d5a0lnajnn5m87j0gwsl6wa"; depends=[]; }; rhandsontable = derive2 { name="rhandsontable"; version="0.3.8"; sha256="07fj6npq65pq836vdwblkhprdaq4i4f13cwdmm9gmxrnk72xj7lh"; depends=[htmlwidgets jsonlite magrittr]; }; rhcoclust = derive2 { name="rhcoclust"; version="1.1.0"; sha256="1d9a29h4h6z04vjjdfi0sx7wpl8iw5zg2ymjpjlppzbbzzq2l8n2"; depends=[fields igraph]; }; - rheroicons = derive2 { name="rheroicons"; version="0.4.0"; sha256="152949yy5kna10f68g06dc7h0m9jql5n2rp5z6hmp8xg3508yz9x"; depends=[htmltools shiny stringr]; }; - rhierbaps = derive2 { name="rhierbaps"; version="1.1.3"; sha256="0i4sr2wwzzl8vki5zihnd8v4ia2kji09cmf4ld07b6k099g5xprr"; depends=[ape ggplot2 matrixStats patchwork purrr]; }; - rhino = derive2 { name="rhino"; version="1.1.1"; sha256="1d3krs76hcdlkbnwip5pq2i7wwf5wp9q4c9jkgsd9fgq85x7qqjs"; depends=[box cli config fs glue lintr logger purrr renv rstudioapi sass shiny styler testthat withr yaml]; }; + rheroicons = derive2 { name="rheroicons"; version="1.0.0"; sha256="02yknpdgfjjkkk9456pxfl9qhaphwrhbxw7fh04ki9a1rgalk0xw"; depends=[htmltools shiny stringr]; }; + rhierbaps = derive2 { name="rhierbaps"; version="1.1.4"; sha256="0717h3j9pamz0hkwcfadivhfh9n2bd9l55kvll1ipc4dz85cp324"; depends=[ape ggplot2 matrixStats patchwork purrr]; }; + rhino = derive2 { name="rhino"; version="1.2.1"; sha256="1qrm9apiy51khan8v63i60kwmd2axp8qg04mqc5cqinbvdd3qps5"; depends=[box cli config fs glue lintr logger purrr renv rstudioapi sass shiny styler testthat withr yaml]; }; rhli = derive2 { name="rhli"; version="0.0.2"; sha256="1mb6bizqkg7zd8nc5a81fw7d0y0vcv6zh6y28k9vikqmc5l1n21q"; depends=[]; }; rhmc = derive2 { name="rhmc"; version="1.0.0"; sha256="1m79f1hx404y0k8lk3n6jnzhr6wwrk83xiym68sq1zvj0wjqiqmw"; depends=[]; }; rhnerm = derive2 { name="rhnerm"; version="1.1"; sha256="1fkh2pr4kzvqvagdyjlyab7p591s913104gyq05q170gmvlpmiww"; depends=[]; }; @@ -15409,12 +15505,13 @@ in with self; { rhype = derive2 { name="rhype"; version="0.3.0"; sha256="16nzycgvp8xrjjly7j96kvy816xna5i5rdnd27gmyjmpf0dvp429"; depends=[Matrix R6 RSpectra]; }; ri2 = derive2 { name="ri2"; version="0.4.0"; sha256="0k85rmjl0inida4wx6d612vp35sr4cg2zsmrby8rl7p4gwrbix5v"; depends=[estimatr generics ggplot2 pbapply randomizr]; }; riAFTBART = derive2 { name="riAFTBART"; version="0.3.2"; sha256="0nj7xqvb711fi764dk7v60sr5s5955cglyf54zkdc6ax365xlnj0"; depends=[BART cowplot dbarts doParallel dplyr foreach ggplot2 magrittr MASS MCMCpack msm nnet randomForest RRF stringr survival tidyr twang]; }; + rib = derive2 { name="rib"; version="0.18.2"; sha256="1868rj0gd61d8jz58nzmjh3nss4bgl9hg49vg0pr1vyf83b154ap"; depends=[R6]; }; ribd = derive2 { name="ribd"; version="1.5.0"; sha256="11plql3fbvfw7ldrz3hs1x27j2l7pm2nd3alanr78yvilv0z16rf"; depends=[glue kinship2 pedtools slam]; }; ricegeneann = derive2 { name="ricegeneann"; version="1.0.2"; sha256="0wxqp4pfdhvq4mwzjrqi3m9jiayk5bp1ha222mpm4qz1pl41cy9w"; depends=[riceidconverter]; }; riceidconverter = derive2 { name="riceidconverter"; version="1.1.1"; sha256="143f76v3k2q9ddcxf2nzvd04pjgy7p120ln0zkmxpal20c81dwq6"; depends=[dplyr]; }; riceware = derive2 { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; }; rich = derive2 { name="rich"; version="1.0.1"; sha256="0kasr9gb85qhngfayqy3fvrsr0a066krwxsx21nsxcnss0mrqygr"; depends=[boot vegan]; }; - ricu = derive2 { name="ricu"; version="0.5.3"; sha256="1y5v42hw6wqkllg0kahwj4akaf85svyl5r8g5jbq9dpr85dnyvgx"; depends=[assertthat backports cli curl data_table fansi fst jsonlite openssl prt readr rlang tibble vctrs]; }; + ricu = derive2 { name="ricu"; version="0.5.4"; sha256="062dzfygi3zc1bn40073hmd0bq4xisz3l8winrqk540sw08mv7mm"; depends=[assertthat backports cli curl data_table fansi fst jsonlite openssl prt readr rlang tibble vctrs]; }; ridge = derive2 { name="ridge"; version="3.3"; sha256="1xb03ir706k2c3y2kpa4dvnz5i0qhm2ghm7syng0kalpdz7swbaw"; depends=[]; }; ridigbio = derive2 { name="ridigbio"; version="0.3.6"; sha256="0q7m6918kh9drlsjns9xg6k13fdilxhm7f8d8d0lqcx1d8kds6f0"; depends=[httr jsonlite plyr]; }; ridittools = derive2 { name="ridittools"; version="0.1"; sha256="1m9xbwxb277l4cd85qxmpw66gyavpwamgwr8kyf8vqarzfbwiilr"; depends=[]; }; @@ -15427,19 +15524,18 @@ in with self; { rinat = derive2 { name="rinat"; version="0.1.9"; sha256="05vi5fggqkj64z0sndngjs7vdvxgy2j5xarccllkcrk9mbzyipvc"; depends=[curl ggplot2 httr jsonlite maps plyr sp]; }; ring = derive2 { name="ring"; version="1.0.3"; sha256="1ljmqq7mngxs59nri36w0cx6a6d85qsbk9v9698hfx9asicv398d"; depends=[R6]; }; ringostat = derive2 { name="ringostat"; version="0.1.5"; sha256="1g2425jig3zhrv0vmr5nb5fqj34vcpmvbly7gc94plsv7wvgxvv3"; depends=[cli httr2 readr stringr]; }; - rintcal = derive2 { name="rintcal"; version="0.5.0"; sha256="1vmy92932hapkkjprf785xqxas0dr55hyqpj0w4nvywln4mspdbr"; depends=[data_table]; }; + rintcal = derive2 { name="rintcal"; version="0.5.2"; sha256="0ka401xy6hpmaw2ap2aq29zh3ppqgql5kkhai0vlp74bxfilg8q3"; depends=[data_table jsonlite]; }; rintimg = derive2 { name="rintimg"; version="0.1.0"; sha256="0jzs4mdwpzbpl0wchyhl3cpywk25ayaxalr12p4cnjl7vnmdm7dp"; depends=[glue htmltools]; }; rintrojs = derive2 { name="rintrojs"; version="0.3.2"; sha256="19lpq421hrs1wc9bnimbwxx35p8bbzil3x1h9l28gjayn4djmjsh"; depends=[jsonlite shiny]; }; rio = derive2 { name="rio"; version="0.5.29"; sha256="04jlrhyl0791yxwcpp1s8p1hhkljnijlc5iaxpk56h41w63k39lz"; depends=[curl data_table foreign haven openxlsx readxl tibble]; }; - rioja = derive2 { name="rioja"; version="1.0-2"; sha256="19lw6rzcqkdrx8xw12kf096ky4wh4f5xbnksx2iawf4i630nix2l"; depends=[dplyr forcats mgcv sjmisc stringr vegan]; }; - riot = derive2 { name="riot"; version="1.0.0"; sha256="1iv83z21k2a8kclfma1cq4jns4zdpgjrzajcsfl105srvv55n0s2"; depends=[cli fs Rcpp readr rlang tibble]; }; + rioja = derive2 { name="rioja"; version="1.0-5"; sha256="1xggjapks2hipn946r65drq45xb7shhbac56r0njh0fm4wwmdzrj"; depends=[mgcv vegan]; }; ripserr = derive2 { name="ripserr"; version="0.1.1"; sha256="1rwsd1yi5vrzdscjgr27fw0d1a6nkc8g2w5hqgqijiwm25h4wl17"; depends=[Rcpp]; }; rise = derive2 { name="rise"; version="1.0.4"; sha256="12r7mbaxp9pjypbpjxlsbqg7spw80gjgm2w0lsvgvclffc50a6ni"; depends=[dplyr ggplot2]; }; riskCommunicator = derive2 { name="riskCommunicator"; version="1.0.1"; sha256="07rfqaf5dpj0wgbz65kdxzl762w8k5a2fsfmg1g895y2i5npq6mz"; depends=[boot dplyr ggplot2 ggpubr magrittr MASS purrr rlang tidyr tidyselect]; }; riskParityPortfolio = derive2 { name="riskParityPortfolio"; version="0.2.2"; sha256="1n2z1vhslrip209j79wm03wmwqdcnbm939sir2wfs5h2cfv126xk"; depends=[alabama Matrix nloptr quadprog Rcpp RcppEigen]; }; riskPredictClustData = derive2 { name="riskPredictClustData"; version="0.2.6"; sha256="0mvy9299pg374gvvqs9lmj2j0f3bzyy279kjpz7jq35hkgz5wif3"; depends=[gee Hmisc MASS mvtnorm]; }; riskR = derive2 { name="riskR"; version="1.1"; sha256="1qadfyb07idfw0bs006kb3917rzda83di6jmsr22941gv78z1wyv"; depends=[]; }; - riskRegression = derive2 { name="riskRegression"; version="2022.09.23"; sha256="1nz4p8v1qv2jjnyl58jqr61achcq8jcg8i81sgz2ai0r70ihlfbl"; depends=[cmprsk data_table doParallel foreach ggplot2 lattice lava mets mvtnorm plotrix prodlim Publish ranger Rcpp RcppArmadillo rms survival timereg]; }; + riskRegression = derive2 { name="riskRegression"; version="2022.11.28"; sha256="1qj8rpqz8i6c4bc3wcvlp28icrr2yaw38azp7d0h495k9klx87b0"; depends=[cmprsk data_table doParallel foreach ggplot2 lattice lava mets mvtnorm plotrix prodlim Publish ranger Rcpp RcppArmadillo rms survival timereg]; }; riskSimul = derive2 { name="riskSimul"; version="0.1.1"; sha256="1yb2ipcqipsl92ighcpahjryir86pi59b1d3qiph7yraxbcx2909"; depends=[Runuran]; }; riskclustr = derive2 { name="riskclustr"; version="0.4.0"; sha256="1b5pjnfz6n716fn1va4kl4y3jzf48sm0i2xaxw0225vmmvq06d9g"; depends=[Matrix mlogit stringr]; }; riskmetric = derive2 { name="riskmetric"; version="0.1.2"; sha256="004a888y0srvaazq90l3v1q11qfl927h87420fs03zklkq27bvr1"; depends=[backports BiocManager covr cranlogs curl devtools httr memoise pillar pkgload tibble urltools vctrs xml2]; }; @@ -15457,13 +15553,14 @@ in with self; { rjazz = derive2 { name="rjazz"; version="0.1.7"; sha256="0wmqlpgcr98dvapfmdcph5mdv202rzzsvb06iy5sqvpizpg7pbsz"; depends=[RCurl]; }; rjdmarkdown = derive2 { name="rjdmarkdown"; version="0.2.0"; sha256="14ndhhxxx7jb9ljhfjxmdrl3kgb1zsrv00kznl2k50fwxx4z66f2"; depends=[kableExtra knitr magrittr RJDemetra]; }; rjdqa = derive2 { name="rjdqa"; version="0.1.1"; sha256="0d7jv3a2a7p7h6jnr5znln06x6m4mksb6cy44xdxir1pwcd1z6br"; depends=[plotrix RJDemetra XLConnect]; }; - rje = derive2 { name="rje"; version="1.11.0"; sha256="1nwd6ym353iw8am1qvcifivp7r892yb1cq9la8nh2hb19rqh8597"; depends=[knitr]; }; + rje = derive2 { name="rje"; version="1.12.1"; sha256="07a1wbn5ps9ygfi25fffgmrzw90izj4yk8gxb47r85x6lvqv1p0h"; depends=[]; }; rjmcmc = derive2 { name="rjmcmc"; version="0.4.5"; sha256="14rzvp6z5avlcnmlmvb6w4gvlh6v4ncbcai3v4c4svnjv555vz45"; depends=[coda madness mvtnorm]; }; rjqpd = derive2 { name="rjqpd"; version="0.2.3"; sha256="14vbp9s2859h4n3m3bq830nvxvk58h3mvvdnb27qsalbcfwd94v5"; depends=[]; }; rjson = derive2 { name="rjson"; version="0.2.21"; sha256="1qm27r1w677zg31gsiln60hcciszbymkw78cnaq7s36cbk9mcawq"; depends=[]; }; rjsoncons = derive2 { name="rjsoncons"; version="1.0.0"; sha256="1y6gf9w914wnygd41iwzy0vr16c4mwacx4pjqqncd3z9h120chpr"; depends=[cpp11 jsonlite]; }; rjstat = derive2 { name="rjstat"; version="0.4.2"; sha256="0j79svby5zzg63pks5667jvky0m5csyyrb863lpba4aprd80pig0"; depends=[checkmate jsonlite]; }; - rjwsacruncher = derive2 { name="rjwsacruncher"; version="0.1.2"; sha256="0kqr2pd3smqxx0h35k8mf7wamdqpqrncjhmvbiap8bwbkhm4sqhb"; depends=[XML]; }; + rjtools = derive2 { name="rjtools"; version="1.0.9"; sha256="0l6l77i584g11p9xgp6mhvlgas3wmxc34xd0vw9ws42v7k1fpv8x"; depends=[bookdown callr cli cranlogs distill fs glue hunspell purrr rlang stringr tinytex whisker xfun yaml yesno]; }; + rjwsacruncher = derive2 { name="rjwsacruncher"; version="0.1.3"; sha256="0g9wbcgj97pn2z6b9lbh10pr54c3qaam5cxghvn2ppzd8ccwkkbb"; depends=[XML]; }; rkafka = derive2 { name="rkafka"; version="1.4"; sha256="00m9zj2fnd32dhm7gn3fclpmp9r2y06sd8yckdbhlvd784b2d4c9"; depends=[rJava rkafkajars RUnit]; }; rkafkajars = derive2 { name="rkafkajars"; version="1.2"; sha256="1z1rn02ymzaq3v3pz206wlm78y591xa9780fwf77i4vfq2k9pxrz"; depends=[rJava RUnit]; }; rkeops = derive2 { name="rkeops"; version="1.4.2.2"; sha256="1b2sdbhx1ar1325mf1xgc561as9x8q8vjqslly9xms2h572c8yn3"; depends=[openssl Rcpp RcppEigen RhpcBLASctl stringr]; }; @@ -15493,7 +15590,7 @@ in with self; { rmapzen = derive2 { name="rmapzen"; version="0.4.3"; sha256="1n44l4sj6s78nr3hqidabkyg9pradk9c1mqfvzhanj2nrfdrwnqj"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal sf sp tibble tidyr]; }; rmarchingcubes = derive2 { name="rmarchingcubes"; version="0.1.3"; sha256="0cdmy728irmbd40xsc2k4r2g8am7s72ks7cw465fa92ml2xa6iq8"; depends=[Rcpp RcppArmadillo]; }; rmargint = derive2 { name="rmargint"; version="2.0.2"; sha256="0irq5114dd8pngl6k13r2rrsivijiqfldm6mby0q5a9wrj2vmwc9"; depends=[]; }; - rmarkdown = derive2 { name="rmarkdown"; version="2.17"; sha256="1gn413pgyfr45mmiv82gymz9r39d41h3ykmai93fihn4ir2nqmxa"; depends=[bslib evaluate htmltools jquerylib jsonlite knitr stringr tinytex xfun yaml]; }; + rmarkdown = derive2 { name="rmarkdown"; version="2.18"; sha256="08lgzb7n7lll1ff7flcyilnz9afj60npi882c035pyyy4vk7majg"; depends=[bslib evaluate htmltools jquerylib jsonlite knitr stringr tinytex xfun yaml]; }; rmatio = derive2 { name="rmatio"; version="0.16.0"; sha256="1ar8736x5ww4cky4qp8fxlwa7p00yycs31ryrqsmbwhwvg2ddlkk"; depends=[Matrix]; }; rmcfs = derive2 { name="rmcfs"; version="1.3.5"; sha256="0rbq2b9fw1x44v7ifxp8qgp4yciinw2sw9mqp4ms5jsxznpi2pi6"; depends=[data_table dplyr ggplot2 gridExtra igraph reshape2 rJava stringi yaml]; }; rmcorr = derive2 { name="rmcorr"; version="0.5.2"; sha256="1q7qa7y6vv4194r9zfrw5arryw5ygbhcm294a90r9wwzpbk6sqhw"; depends=[psych RColorBrewer]; }; @@ -15505,7 +15602,7 @@ in with self; { rmdpartials = derive2 { name="rmdpartials"; version="0.5.8"; sha256="15dw0pk1hdif839k60swna4li04inf7fzsiq9bxbw2wk5pdkqirn"; depends=[digest knitr rlang]; }; rmdplugr = derive2 { name="rmdplugr"; version="0.4.1"; sha256="16wmrya8wdipqcrh34k4v4iq05aqd0jwf7rg6w1wsvx2i9211xg6"; depends=[bookdown rmarkdown]; }; rmdshower = derive2 { name="rmdshower"; version="2.1.1"; sha256="1sjpi5ils31adii51gaa8ly7x93l9ganp6in8rsln6si4jc2ppg9"; depends=[rmarkdown]; }; - rmdwc = derive2 { name="rmdwc"; version="0.2.1"; sha256="0zbwfi0rsx7mhk6s5798qg1zr7yv8hgw8qazznsd30diyprnyzbq"; depends=[knitr]; }; + rmdwc = derive2 { name="rmdwc"; version="0.3.0"; sha256="0s7k54ggf0zdkkjg8k5jz2kfjpw99i59k82xqgvj7qaxvakm7vss"; depends=[knitr rstudioapi]; }; rmeta = derive2 { name="rmeta"; version="3.0"; sha256="0vkbnxp579v8zmcv1isdbzj5swpr6fq17zwparxcvzswjc2x9ydr"; depends=[]; }; rmetalog = derive2 { name="rmetalog"; version="1.0.3"; sha256="1naqhv81gdcgl2vi2sa3nb006mn8dxc0rdc49v321a5b10bybzvr"; depends=[ggplot2 lpSolve]; }; rmgarch = derive2 { name="rmgarch"; version="1.3-9"; sha256="0sg10j4jp74s65lzs2da2qqdcwgkf71rss9p7f1b14n2yz7xdf1v"; depends=[Bessel corpcor ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; }; @@ -15524,7 +15621,7 @@ in with self; { rmt = derive2 { name="rmt"; version="1.0"; sha256="165cqnwqr0dx7b8dgq7xlfk4j55p9l6dr5b2rzyvfy5l23k4kckn"; depends=[]; }; rmumps = derive2 { name="rmumps"; version="5.2.1-20"; sha256="17jm7b7rnq5x5jyyj5pc10zpkp55y9l9amm1rq7cd4qs53w01dka"; depends=[Rcpp]; }; rmutil = derive2 { name="rmutil"; version="1.1.10"; sha256="1yd5gkg4jg3rvqrfl8c5r07lcr37n1p9h1a7b6s45iswd77dg7w1"; depends=[]; }; - rmweather = derive2 { name="rmweather"; version="0.1.51"; sha256="0qd49lr12hc39dwg348b021aqxw57pfcb9xxhp51fvnw6gw6bgqd"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble viridis]; }; + rmweather = derive2 { name="rmweather"; version="0.2.4"; sha256="18ajzwm0jb6wklrxp8cmifym4wn22y2rw4llhjxrc98fkis3jgk3"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble tidyr viridis]; }; rmytarget = derive2 { name="rmytarget"; version="2.4.0"; sha256="1csl5b76r706gzvzhqgg4pdznbdl4i3b0srazwa7xdfc6zbrzljp"; depends=[dplyr httr lubridate purrr stringr tidyr]; }; rmzqc = derive2 { name="rmzqc"; version="0.1.0"; sha256="03a02d7a7jkvr72lgrbgmphsnlx65ym5gganm7y3lk43ap2zy55m"; depends=[jsonlite knitr ontologyIndex R6 R6P rmarkdown testthat]; }; rnassqs = derive2 { name="rnassqs"; version="0.6.1"; sha256="00daka4pgvmipqq3151jj35fsicpfc06mnim8mm5jx5cyqcvilf7"; depends=[httr jsonlite]; }; @@ -15535,19 +15632,18 @@ in with self; { rneos = derive2 { name="rneos"; version="0.4-0"; sha256="07b3vb0h36ilwb8iylgppl8wpi84f583frmscpj236s1aihqwrmx"; depends=[RCurl XML]; }; rnetcarto = derive2 { name="rnetcarto"; version="0.2.5"; sha256="169r1b2wvz13n7fcrvl80bidw6cwhng3d9vdji64g5wx1nv27arc"; depends=[]; }; rngSetSeed = derive2 { name="rngSetSeed"; version="0.3-2"; sha256="00mqjjkhbnvxqkf1kz16gipsf98q62vmhx9v8140qs7c4ljbhc3a"; depends=[]; }; - rngWELL = derive2 { name="rngWELL"; version="0.10-7"; sha256="0f1dxxaimfb0fww8ym9ciqf6q760ai46wxldl37m5mfpd57ca00c"; depends=[]; }; + rngWELL = derive2 { name="rngWELL"; version="0.10-8"; sha256="0ad1mz11l27h6apil2hd7gwz5zhi9jkjrk2jnhbkd8d0wz9g0sis"; depends=[]; }; rngtools = derive2 { name="rngtools"; version="1.5.2"; sha256="0kd7x214cqw7hzpmk1iqy1bn7j6x0ady0yz2hsdbclbq9k57d33z"; depends=[digest]; }; - rnmamod = derive2 { name="rnmamod"; version="0.2.0"; sha256="0dncj3dldb4d1j5m1dypk9lyg5jb2m2fi1k7p9sl52a6bfadcbb4"; depends=[coda dplyr fdrtool gemtc ggfittext ggplot2 ggpubr ggrepel knitr MASS mcmcplots netmeta pcnetmeta R2jags reshape2 scales writexl]; }; + rnmamod = derive2 { name="rnmamod"; version="0.3.0"; sha256="1cb6f5s0m7cciwyy8pd16qf4615k2vh58lgx5mdp9mpybwnvwapx"; depends=[dplyr fdrtool gemtc ggfittext ggplot2 ggpubr ggrepel knitr MASS mcmcplots netmeta pcnetmeta R2jags reshape2 scales writexl]; }; rnn = derive2 { name="rnn"; version="1.8.0"; sha256="1r8hwdc8i2rf4ma53n53hxcc637aizcqs6z6rjbhbvs56hgaxnz1"; depends=[attention sigmoid]; }; rnoaa = derive2 { name="rnoaa"; version="1.3.8"; sha256="12mrvvq93535pk9g52h0sl5wdlw0wpqdchghi24fjdr62r44p5sp"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate scales tibble tidyr tidyselect XML xml2]; }; rnpn = derive2 { name="rnpn"; version="1.2.5"; sha256="02ka6ibdm9sbx3cffdh1lvr8555iqq3w74cs60djivp56gsvy009"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; rnrfa = derive2 { name="rnrfa"; version="2.1.0"; sha256="1x0kqk060kjw84jlrbcp1z6agc5d96xy0ydfbgvh60cg9v1q8kpr"; depends=[curl ggmap ggplot2 httr jsonlite lubridate sf tibble zoo]; }; roadoi = derive2 { name="roadoi"; version="0.7.2"; sha256="1q2mkd7r5aqvahx7rrzv58nd6d13gvlw7kjidqhm7z89na94pn8w"; depends=[dplyr httr jsonlite miniUI plyr purrr rlang shiny tibble tidyr]; }; - roads = derive2 { name="roads"; version="1.0.0"; sha256="02gkxvlngf23xv3sh578ynd5jzhlsslnllbvppyasbf4izisng16"; depends=[data_table dplyr igraph raster rlang sf sp SpaDES_tools stars tidyselect units]; }; roahd = derive2 { name="roahd"; version="1.4.3"; sha256="089klcgxry6b8z30h1ssy024lqxqm1bz6qs2kx95qjfl8xgwlwm0"; depends=[dplyr ggplot2 magrittr plotly robustbase scales]; }; robCompositions = derive2 { name="robCompositions"; version="2.3.1"; sha256="13m03r2mcs6srn3hk46lrjhyv5px9jyvqsqbxri1h79f31bji58b"; depends=[car cluster cvTools data_table e1071 fda fpc GGally ggfortify ggplot2 kernlab MASS mclust pls Rcpp RcppEigen reshape2 robustbase robustHD rrcov tidyr VIM zCompositions]; }; - robFitConGraph = derive2 { name="robFitConGraph"; version="0.1.0"; sha256="092nc0xnjs2zxd9ij0dl1xggb8mwl8nly284yjhhygmwlwsvhzxm"; depends=[MASS mvtnorm Rcpp]; }; + robFitConGraph = derive2 { name="robFitConGraph"; version="0.4.1"; sha256="0w5x4ndv5r8v7ji3dhmch0di4krphxrclyidfg5b3qbmn1hlhlih"; depends=[Rcpp RcppArmadillo]; }; robber = derive2 { name="robber"; version="0.2.2"; sha256="053yiwjlsg7z9p5l60wddm1wf5wni54a28yp6x4hbfkgaazvby02"; depends=[blockmodels ggplot2 GREMLINS igraph magrittr pammtools partitions purrr]; }; robcbi = derive2 { name="robcbi"; version="1.1-3"; sha256="0rj732qdd0wd9d9pxldnsw5rif5d7wz327iydvxcf5x8lgvk42jd"; depends=[robeth]; }; robcor = derive2 { name="robcor"; version="0.1-6.1"; sha256="0gmhklk8nayhfl2zfp7mhsawryyn950gdh5lgg3vq1nkl12sc8y7"; depends=[]; }; @@ -15555,7 +15651,7 @@ in with self; { roben = derive2 { name="roben"; version="0.1.0"; sha256="18k0h1y2xhvdssg28b9s4whn3kcbdgkz55dp1y3rrczw8xrm54mm"; depends=[glmnet Rcpp RcppArmadillo]; }; robeth = derive2 { name="robeth"; version="2.7-6"; sha256="1x0hzgq7jwl83wwmy581ia8009v0j95aksnr5ywpflnqm76rj6v2"; depends=[]; }; robets = derive2 { name="robets"; version="1.4"; sha256="0lvzfpv6569pjysblhadd05sglx0qvyr9wipb9cpiya4a1992n61"; depends=[forecast Rcpp]; }; - robfilter = derive2 { name="robfilter"; version="4.1.2"; sha256="0mvpaf6g694b7175bl3yr6lxbwla4pwp7g4y34qb4klgl5n3nw03"; depends=[lattice MASS robustbase]; }; + robfilter = derive2 { name="robfilter"; version="4.1.3"; sha256="1r56p25c0624dxbd9lh8vbdqp69m0fzcfbzdx1kg4v0c25106ysw"; depends=[lattice MASS robustbase]; }; robflreg = derive2 { name="robflreg"; version="1.0"; sha256="0b0iwpn2rdwydwzabf2b5030fma78gjy9640ky0xhhpyfvm28z3z"; depends=[expm fda fda_usc goffda MASS mvtnorm pcaPP plot3D robustbase]; }; robin = derive2 { name="robin"; version="1.1.1"; sha256="1mvv2snvfizwxc743m8kxm3amwgb31079wjc6dlbgdah9f7fja7n"; depends=[DescTools fdatest ggplot2 gridExtra igraph Matrix networkD3 qpdf spam]; }; robis = derive2 { name="robis"; version="2.11.3"; sha256="04yz7i7mfc1jb2qbmm7yy0m6y7jnzck73m9d7hjjj6pc4ljf4cax"; depends=[curl data_table dplyr ggplot2 glue httpcache httr jsonlite leaflet mapedit memoise purrr rlang sf stringr tibble tidyr tidyselect xml2]; }; @@ -15572,6 +15668,7 @@ in with self; { robslopes = derive2 { name="robslopes"; version="1.1.2"; sha256="06j9n4p6pmiydhrm24skj7qlv5ia9f5qwbs8jss5cvmbjad7lqgq"; depends=[Rcpp RcppArmadillo]; }; robsurvey = derive2 { name="robsurvey"; version="0.5"; sha256="1h8gl14lzbp321rcw4f0snrnjgzcpcmlb5dh7cw9q29w2zkpznpz"; depends=[KernSmooth survey]; }; robumeta = derive2 { name="robumeta"; version="2.0"; sha256="1ynlfxlzh442jd1cf02j0f948m16d536a30gb4bf7208baqri1vg"; depends=[]; }; + robusTest = derive2 { name="robusTest"; version="1.0.0"; sha256="1r20n9zlfq4a2i2n8cnypi8i978d1xsv3jfcq6ka6rvzlzf7xmnj"; depends=[Rcpp]; }; robust = derive2 { name="robust"; version="0.7-1"; sha256="1pv5xvns3p8dpaadf6v0fqz099ml768ahgp271wpiclrcc6cgapg"; depends=[fit_models lattice MASS robustbase rrcov]; }; robust2sls = derive2 { name="robust2sls"; version="0.2.1"; sha256="1dcg8pmyyywspcdn95g41673wf89mmbggwn9gwsr9225w5jl26pl"; depends=[doRNG exactci foreach ivreg MASS mathjaxr pracma]; }; robustBLME = derive2 { name="robustBLME"; version="0.1.3"; sha256="18wx116l1riy4wn4083kxl637mkyyi9wbwnmvhkgqw3vb36s4vxd"; depends=[doParallel foreach iterators lme4 mvtnorm numDeriv Rcpp RcppArmadillo]; }; @@ -15584,7 +15681,7 @@ in with self; { robustbetareg = derive2 { name="robustbetareg"; version="0.3.0"; sha256="09f4binbi5gcf80fhpxzrmpm2k2xf6f7rcw9g2xzmni8b4cs2l6p"; depends=[BBmisc betareg crayon Formula MASS Matrix miscTools numDeriv pracma Rmpfr robustbase rstudioapi zoo]; }; robustcov = derive2 { name="robustcov"; version="0.1"; sha256="1bgvf9h727aqfb11q976y2ybp3mpghkyd29waypyfp95csp3cf26"; depends=[caret glasso Rcpp RcppArmadillo]; }; robustlm = derive2 { name="robustlm"; version="0.1.0"; sha256="17l2kr9dc3z02b2jswfxal13md4xfpz4sqjfg6kyg6ilab1cfd06"; depends=[MASS matrixStats]; }; - robustlmm = derive2 { name="robustlmm"; version="3.0-4"; sha256="1knyc8c9846hidq8s1zdzagmfvf1rfsx9avhkjdzxaf38n5ai092"; depends=[cubature fastGHQuad ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen rlang robustbase xtable]; }; + robustlmm = derive2 { name="robustlmm"; version="3.1-2"; sha256="0kvgqf89nf83yr3rcy5lrq7xyjpl157zf3hz7879qpg5swxr1cyz"; depends=[fastGHQuad lattice lme4 Matrix nlme Rcpp rlang robustbase xtable]; }; robustmeta = derive2 { name="robustmeta"; version="1.1-1"; sha256="0f7qj3c01wxhcx86hwjr2gik041vjvnzg444kyn72v7b7fr3nlyz"; depends=[metafor]; }; robustrank = derive2 { name="robustrank"; version="2019.9-10"; sha256="1xikknrmnh95wpvyljdl7v510ddi1g7a88aw3l630s789nq5i02h"; depends=[kyotil]; }; robustrao = derive2 { name="robustrao"; version="1.0-5"; sha256="1r8v9qjx70s8swh09imq9kzdxg0qhnmk00zrg939mig9b12mw1p6"; depends=[doParallel foreach gmp igraph iterpc quadprog]; }; @@ -15594,10 +15691,9 @@ in with self; { robvis = derive2 { name="robvis"; version="0.3.0"; sha256="0xzvx3230ydd082jmdlm70vyhjizknngfzhvcbqpdcm403klni5h"; depends=[ggplot2 scales tidyr]; }; rocNIT = derive2 { name="rocNIT"; version="1.0"; sha256="18vxyh1wcq6dv62xf2dyl4226cd00n4hlbaqnynl9j5gnrmmsvi1"; depends=[]; }; rocTree = derive2 { name="rocTree"; version="1.1.1"; sha256="1hd5v47gymffg5829swpd38xscm4vq75d46fibwkrr7jp9iy37ra"; depends=[data_tree DiagrammeR flexsurv ggplot2 MASS Rcpp RcppArmadillo survival]; }; - rocbc = derive2 { name="rocbc"; version="0.1.1"; sha256="1307jgkc7dcpvcqddhivx20i88669m0zri14s9anmhxvl3rg624g"; depends=[clinfun mvtnorm pracma splancs]; }; + rocbc = derive2 { name="rocbc"; version="0.2.0"; sha256="1zmnhih7d29bqly0jwdhsbk9z6dxvqm7r2ghzaf9w3xva8q0wapi"; depends=[clinfun mvtnorm pracma splancs]; }; rocc = derive2 { name="rocc"; version="1.3"; sha256="1j15l28c7kv7x850ycjprqi5gpbsl6wfv97h9lbrx11q5l4r9ivb"; depends=[ROCR]; }; roccv = derive2 { name="roccv"; version="1.2"; sha256="18kq2gzcbz97dw168xppql8k3slpkfl8yv1d8ac48damlhvipif1"; depends=[glmnet pROC]; }; - rock = derive2 { name="rock"; version="0.5.5"; sha256="1c6g563fmm1anwhfnfiirlinrdzkb6z1c1zn4hr4c331wkyvihcm"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; }; rockchalk = derive2 { name="rockchalk"; version="1.8.157"; sha256="13g2rdnxazqfgy653d7vj6w79b2vgnd7bbz0sqn9k4qiig59jh41"; depends=[carData kutils lme4 MASS]; }; rocker = derive2 { name="rocker"; version="0.3.1"; sha256="15l6m8cmanw0av0c0wgn4m4ms6ablkj4hd0i9i9vq4003gafh9va"; depends=[DBI R6 sodium]; }; rockr = derive2 { name="rockr"; version="1.0.0"; sha256="190xaxcbb7miqw5mxyfqqlb2vzacifc8a7a3cqfdlpxra4d4jc25"; depends=[httr jsonlite mime progress]; }; @@ -15608,7 +15704,7 @@ in with self; { rodd = derive2 { name="rodd"; version="0.2-1"; sha256="01zrkw4lr21vxk2grfc37iyrcipfdcj5m0i7gnxsvs435y9fqagd"; depends=[Matrix matrixcalc numDeriv quadprog rootSolve]; }; rodeo = derive2 { name="rodeo"; version="0.7.7"; sha256="1cfsf6sld72bm1343p6fzpfwq7a976basf3fg5fqsj2rcx6b1q7b"; depends=[deSolve R6]; }; rofanova = derive2 { name="rofanova"; version="1.0.0"; sha256="0w8c5c5q0s2qv1b4nxgf8y1z3g0l9c6jr6i0280b5mp9in9wn8a6"; depends=[abind fda_usc Rcpp RcppArmadillo robustbase]; }; - roger = derive2 { name="roger"; version="1.2-0"; sha256="0a61qfizg1xl0vw8z6hr3kxwxd2fn2762p90cpqrpnx7hpnk9v6n"; depends=[]; }; + roger = derive2 { name="roger"; version="1.3-1"; sha256="0zx2jm6x9ks6ynacwm552aiwz5sqh9nj95k96d11r417w7vd82ya"; depends=[]; }; roistats = derive2 { name="roistats"; version="0.1.1"; sha256="1278cap5il85s1qls3sc0f4gqq2hi80442qidnsc6d8r3l4ba3fr"; depends=[dplyr magrittr purrr rlang tidyr]; }; roll = derive2 { name="roll"; version="1.1.6"; sha256="1crzr0kqdls08n6i3769zrxbxvh2m4hv5k3xi6ky6ps8hhicwqc9"; depends=[Rcpp RcppArmadillo RcppParallel]; }; rollRegres = derive2 { name="rollRegres"; version="0.1.4"; sha256="1q1xs43c860fqv5anfdv0zdb5s8n794yvhn1c7px1kdh2g0jbjp7"; depends=[checkmate Rcpp RcppArmadillo]; }; @@ -15618,7 +15714,7 @@ in with self; { rollmatch = derive2 { name="rollmatch"; version="2.0.2"; sha256="1bm1yc2z9byj4m9gz0il47y8drd3qzsb5lwb22a22axy306lqfqj"; depends=[dplyr magrittr]; }; roloc = derive2 { name="roloc"; version="0.1-1"; sha256="0xynj12gp010c23f6ll9p343vwgxwa22s771p1w2pi65cj2ixhas"; depends=[colorspace]; }; rolocISCCNBS = derive2 { name="rolocISCCNBS"; version="0.1"; sha256="100jh5m2c1zp5wg3wd4y2i47dzx1j0g6lfwyqmwk4bz99yzzz5am"; depends=[colorspace roloc]; }; - rolog = derive2 { name="rolog"; version="0.9.4"; sha256="05a8wf2nkw3nssys9xbf40ihgbw4x6vjmzp2dcfsqxhr0wjmd7km"; depends=[Rcpp]; }; + rolog = derive2 { name="rolog"; version="0.9.6"; sha256="1j7pw9f0g2c6fvv8f7fsddfrmhkrxw8xa4k3byfqb2vdbygqndb1"; depends=[Rcpp rswipl]; }; rolr = derive2 { name="rolr"; version="1.0.0"; sha256="04nm4q0mlr4w6jb0frykzlyknfn3gn02ysqr5ll5jch6wawichy2"; depends=[survival]; }; romic = derive2 { name="romic"; version="1.0.0"; sha256="08iqk71bn4yjxnbwj99jbrz3028jjs8f07ns9r9iaj6byyxv4vd1"; depends=[checkmate dplyr ggplot2 glue purrr readr reshape2 rlang shiny stringr tibble tidyr]; }; rootSolve = derive2 { name="rootSolve"; version="1.8.2.3"; sha256="182bb727sgqi5f3pzmw8jnn328wdjrgj9lfvg49gv8s22rjd3cxm"; depends=[]; }; @@ -15635,24 +15731,25 @@ in with self; { roptions = derive2 { name="roptions"; version="1.0.3"; sha256="1rcwzzyzaicvxh8zvqy9wgz5xsixgnizy9i4nh7l33zimm20lsdl"; depends=[ggplot2 plotly purrr]; }; rorcid = derive2 { name="rorcid"; version="0.7.0"; sha256="1d0s5w48ksyj152nc4xq5w0nsimab8jc5fgspdwnbas2g8a52igr"; depends=[crul data_table fauxpas httr jsonlite tibble xml2]; }; rorqual_morpho = derive2 { name="rorqual.morpho"; version="0.1.1"; sha256="1475yhb5qwj4zpsc4gqqpzs7qvyddxwc63i1f4rhnv6id2hi4msp"; depends=[dplyr magrittr]; }; + rosetta = derive2 { name="rosetta"; version="0.3.10"; sha256="0f7b60xj5kcb5dwjk194kr1hz3hbzzd61bqkg4wpjgwyiai75v8y"; depends=[car ggplot2 ggrepel gridExtra kableExtra knitr lavaan lme4 multcompView pander plyr psych pwr rmdpartials ufs viridis]; }; rosetteApi = derive2 { name="rosetteApi"; version="1.14.4"; sha256="166p3dvib0xpvhkb92b3imassv1b9mrblz2m05jai2nzlz0q7hzk"; depends=[httr jsonlite]; }; rosm = derive2 { name="rosm"; version="0.2.6"; sha256="11nl3602f3wfccwayjd0a3kqs2lyfb09clccvhvalsp0di7ndbhh"; depends=[abind curl jpeg plyr png prettymapr rgdal rjson sp]; }; rospca = derive2 { name="rospca"; version="1.0.4"; sha256="1pxm34xsc2610n0i6dwcm4rhn016yqb03f8vrm93r7285c04n4q7"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; - rotasym = derive2 { name="rotasym"; version="1.1.3"; sha256="1sknhvwmy1r0sa76lp8qv5h7lx05mvw04ip7cvxcamwg6l2bifis"; depends=[Rcpp RcppArmadillo]; }; + rotasym = derive2 { name="rotasym"; version="1.1.4"; sha256="08xprp6jmf91lvg3y6wh9mdrxpv0vv9aqynlch842294fy0wzgl1"; depends=[Rcpp RcppArmadillo]; }; rotationForest = derive2 { name="rotationForest"; version="0.1.3"; sha256="1z2wk3mcs5hrahsxralidbc0dd8gxdbwjpr2f71g4g3isfx1ic8d"; depends=[rpart]; }; rotations = derive2 { name="rotations"; version="1.6.4"; sha256="19d7filrgwm25cklbpjr082cn0h991xa5lvrijjl59whan4axjkg"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo]; }; rotl = derive2 { name="rotl"; version="3.0.14"; sha256="1kszmn0fnjfay7d53wmpn31nayahkhkccmakbl8mcv0f5h0yfalq"; depends=[ape curl httr jsonlite rentrez rlang rncl]; }; rotor = derive2 { name="rotor"; version="0.3.7"; sha256="02mzcwd94hykysz3cv0q3dlhbbd4k3rm1di7dcw6m4masgzy05zb"; depends=[dint R6]; }; - roughnet = derive2 { name="roughnet"; version="1.0.0"; sha256="063aibj0a906vmyk5qyah9z45dbvpxribvs856pgim0lr3y5fhzg"; depends=[graphlayouts htmlwidgets igraph jsonlite]; }; + roughnet = derive2 { name="roughnet"; version="1.0.1"; sha256="1brl1zwmmczbismgvbq2m1i1n1v85m410z2ap6r7jqxpfn111kis"; depends=[graphlayouts htmlwidgets igraph jsonlite]; }; roughsf = derive2 { name="roughsf"; version="1.0.0"; sha256="0am4yd168pss53p8869akx4bnw95d3k30fbv17pml8y9iriq6zs5"; depends=[htmlwidgets jsonlite sf]; }; round = derive2 { name="round"; version="0.20-0"; sha256="1c403i57fwfh3pz6ksg5ws2fydq8zf2fk4x6r9d0xqn0fs7px7j4"; depends=[]; }; roundhouse = derive2 { name="roundhouse"; version="0.0.2"; sha256="0xx2wai9pdq0g7x8xmwlf48wxv4v18c7ymzvzxpvw1gggppmbk69"; depends=[]; }; routr = derive2 { name="routr"; version="0.4.1"; sha256="0sqllafwxqlkf8bl5nc3fpf17aqg5nbimrmc8l3z95y3gwhnqhkb"; depends=[assertthat digest R6 reqres stringi uuid]; }; roxut = derive2 { name="roxut"; version="0.4.0"; sha256="1ciflhmavl24wk4kjbilmm70q6z8i02m36x4pyh4m3czhnpyyv03"; depends=[roxygen2]; }; - roxygen2 = derive2 { name="roxygen2"; version="7.2.1"; sha256="08fs5jw6npriqsr8pribs2yy1r8163xzcv4gmlgmcaywj4jk9w6j"; depends=[brew cli commonmark cpp11 desc digest knitr pkgload purrr R6 rlang stringi stringr withr xml2]; }; + roxygen2 = derive2 { name="roxygen2"; version="7.2.3"; sha256="1nhn0jhnxzlyqx0qnpd7k7q3azzngyn0j4zs8awmlmyjfywzli6q"; depends=[brew cli commonmark cpp11 desc knitr pkgload purrr R6 rlang stringi stringr withr xml2]; }; roxygen2md = derive2 { name="roxygen2md"; version="1.0.0"; sha256="1gvrfy0sk5qi8d93zxj5f7xgnnw0w38zyxdik4ckf0pkk0zdm27a"; depends=[desc devtools enc rex rlang tibble usethis withr]; }; roxytest = derive2 { name="roxytest"; version="0.0.1"; sha256="166m0pklgryh3vildg0bvzh9gs3p71sf61ivgkvkvyy9vhvnp3jf"; depends=[roxygen2]; }; - rpact = derive2 { name="rpact"; version="3.3.1"; sha256="152kmlw4q7jlhhp1xx3hamkyyflhsbxr1v3kb57x705v64h3qp54"; depends=[Rcpp]; }; + rpact = derive2 { name="rpact"; version="3.3.2"; sha256="1fpy36rr1zcbqxbnmzi154h9iws3xss14b3xrjzz6l1k7gralr65"; depends=[Rcpp]; }; rpanel = derive2 { name="rpanel"; version="1.1-5.1"; sha256="05cvazjwi66bm1fa3pfpl3p931i221y3y0am6iaf23gifsgl1ss2"; depends=[]; }; rpart = derive2 { name="rpart"; version="4.1.19"; sha256="0rcm4hk2k0ag9qmb0f933yqrq8jpnclwrzp6825swgsqnp83wwpy"; depends=[]; }; rpart_LAD = derive2 { name="rpart.LAD"; version="0.1.2"; sha256="1v1arv5b02n0jvyifb5km9w3z3wxg9x9g3g4xck4s319z5g6lp7n"; depends=[Rcpp rpart]; }; @@ -15688,7 +15785,7 @@ in with self; { rqdatatable = derive2 { name="rqdatatable"; version="1.3.1"; sha256="1ml83gw9m9945qws2pi0x3bzm1jn4rh8n7zwivbir685hfprbhvn"; depends=[data_table rquery wrapr]; }; rquery = derive2 { name="rquery"; version="1.4.9"; sha256="12m80vr2sxm2ivvd1a27jy6vh9xvk5z4irlkaxm1f0sxi462brra"; depends=[wrapr]; }; rr = derive2 { name="rr"; version="1.4.1"; sha256="0l5ndcpnd3ib83vwh5bs83nvjr4in3v2kbqq8q4y9x90nrxaz901"; depends=[arm coda magic MASS]; }; - rr2 = derive2 { name="rr2"; version="1.0.2"; sha256="099vjg91ni2bnxlra18pvgsvzrl28zrj639cdjrh3wkpqv99d04q"; depends=[ape lme4 Matrix nlme phylolm]; }; + rr2 = derive2 { name="rr2"; version="1.1.0"; sha256="1nbjai514zrv5j9w52x59inf9fqy0c7r1ijrr1d3xirkvk8c70mi"; depends=[ape lme4 Matrix nlme phylolm phyr]; }; rrBLUP = derive2 { name="rrBLUP"; version="4.6.1"; sha256="1ny48ra25rzx3k69pmzpd31ka2zhqyqiq1v7ann862j3ris0w8z9"; depends=[]; }; rrMixture = derive2 { name="rrMixture"; version="0.1-2"; sha256="0bh63v9zis8w3ylvbc99iy2hx0wn6302d49bhcw3wr7wmbzvdi8s"; depends=[gtools MASS Matrix matrixcalc Rcpp RcppArmadillo]; }; rrapply = derive2 { name="rrapply"; version="1.2.6"; sha256="05shia32hs6y739dfk35y671c8nrifhb415mn3sdg4v065j2k1jc"; depends=[]; }; @@ -15698,8 +15795,8 @@ in with self; { rrcovHD = derive2 { name="rrcovHD"; version="0.2-7"; sha256="1srxgw5qcgpmxqfplvbrlryxvkx0mic5y7v5lxgfvqvlmcb3rm3f"; depends=[pcaPP pls Rcpp robustbase robustHD rrcov spls]; }; rrcovNA = derive2 { name="rrcovNA"; version="0.4-15"; sha256="0r60chxm7bpc6sis60rp8k8xchwfrfa3lrfaidvv22ipx2q0psp7"; depends=[cluster lattice norm robustbase rrcov]; }; rrecsys = derive2 { name="rrecsys"; version="0.9.7.3.1"; sha256="1qnjriv1xq4gjjhzz8jxrbk88mw5xddl2l2i4bmfhnxhi51d2rk3"; depends=[ggplot2 knitr MASS Rcpp registry]; }; - rredlist = derive2 { name="rredlist"; version="0.7.0"; sha256="1w77cnfrybmqnadsmfkpjv5m49kkr7yc6kcqq165lmj3bijnprnj"; depends=[crul jsonlite]; }; - rrefine = derive2 { name="rrefine"; version="2.0.0"; sha256="1plv6ykhcpp8d111gkkh8zx9zjrkxqpvg6vcbcy2234yd6wd0wky"; depends=[httr jsonlite readr]; }; + rredlist = derive2 { name="rredlist"; version="0.7.1"; sha256="11dfad1r93b8q6jbn319lz9w7qbw7nqwxyck3fs1kp0il8vhr8cj"; depends=[crul jsonlite]; }; + rrefine = derive2 { name="rrefine"; version="2.1.0"; sha256="0zp0gs505rgrpnsfysk1fzm7x9jrvpigrqrpywfhjxfv8vb6hhyh"; depends=[httr jsonlite readr]; }; rreg = derive2 { name="rreg"; version="0.2.1"; sha256="05c2yj58zn43zkmqp4iyblsixsq76hsjkchffl5rkqynvgxi0qzi"; depends=[directlabels ggplot2]; }; rrepast = derive2 { name="rrepast"; version="0.8.0"; sha256="1x8xda9cndxri2hhd2ihxmjjy0x74r0dh3953dfh7gvj4slaf0rl"; depends=[digest doSNOW foreach ggplot2 gridExtra lhs rJava sensitivity xlsx]; }; rres = derive2 { name="rres"; version="1.1"; sha256="138m26ya119805b1akwski0hf1ypiqsqjlkrm9p0l2x22zrv1n60"; depends=[kernlab Rcpp]; }; @@ -15712,7 +15809,7 @@ in with self; { rrtable = derive2 { name="rrtable"; version="0.3.0"; sha256="1y1hfscnw466azxk1c2kpa486xn8561zl5inv7yk5q8926ls2zc3"; depends=[devEMF editData flextable ggplot2 ggpubr magrittr moonBook officer purrr readr rlang rmarkdown rvg shiny shinyWidgets stringr ztable]; }; rrum = derive2 { name="rrum"; version="0.2.0"; sha256="0w0f2n14if2b8x7n6v8y8q2vghd8j7xm1xhpxnvy3z50flinwgm7"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; rsae = derive2 { name="rsae"; version="0.2"; sha256="0gi7igaymsikxx73dw3ak9pg2vhlvcz5xlbxz8clfxy1d66g58hd"; depends=[]; }; - rsample = derive2 { name="rsample"; version="1.1.0"; sha256="1iy61riwjch9z4m6k7whsrkl80sk9sww5lf1np4iq4vdfq6w01jb"; depends=[dplyr ellipsis furrr generics glue pillar purrr rlang slider tibble tidyr tidyselect vctrs]; }; + rsample = derive2 { name="rsample"; version="1.1.1"; sha256="1fmqfk1yihmh7lkszsf7pvn6zf67lpgff46hv2lpnfbssa3axllh"; depends=[dplyr furrr generics glue pillar purrr rlang slider tibble tidyr tidyselect vctrs]; }; rsbp = derive2 { name="rsbp"; version="0.1.0"; sha256="0aardngvj9apn8q5vhfpv67rf7d5iqb7xdq7rh8xmgr8341fvbgc"; depends=[dplyr lubridate magrittr purrr reshape2 tibble tidyr xml2]; }; rscala = derive2 { name="rscala"; version="3.2.19"; sha256="1wq0wrdbh0gi0bx4m9526qlbjm7nxxqgc17ikdx5mrhcy2f61hjk"; depends=[]; }; rscc = derive2 { name="rscc"; version="0.2.1"; sha256="10srbalj8i67z30amvf08zfa4hs6phvq17kfgys9ihwaknckcyx3"; depends=[crayon formatR highlight igraph tm]; }; @@ -15732,7 +15829,7 @@ in with self; { rsimsum = derive2 { name="rsimsum"; version="0.11.3"; sha256="1pncp138ch69pb21lks8ziwhn2vhb5y812g2i9zfpdmfnprhg2d6"; depends=[checkmate generics ggplot2 ggridges knitr lifecycle rlang scales]; }; rsinaica = derive2 { name="rsinaica"; version="0.6.1"; sha256="1ba19b2fgnnl50qp6hgjppgxbadghq68qap9f0m51k2k3ijgfiwn"; depends=[dplyr httr jsonlite lubridate stringr]; }; rskey = derive2 { name="rskey"; version="0.4.4"; sha256="1la3apypp1kk425r753vqwm3nk9zmynp9gix6db0ckkssw0fjxpw"; depends=[berryFunctions rstudioapi]; }; - rsleep = derive2 { name="rsleep"; version="1.0.4"; sha256="0rb9dpy1ks04mqb0aismkj0zg9sigyrbgb6j0rl9cw2npp0jz7vg"; depends=[edfReader ggplot2 jsonlite phonTools psd signal]; }; + rsleep = derive2 { name="rsleep"; version="1.0.5"; sha256="1lrjghj8i1q6b1hr97kfy35c75xzwlijcnzmp9wy129m9xygkk2r"; depends=[abind edfReader ggplot2 jsonlite phonTools psd signal]; }; rslp = derive2 { name="rslp"; version="0.2.0"; sha256="186k1gngirqhvhii4ysq77wjf5gf75c7gya73minb0pfg9fn16l7"; depends=[magrittr plyr stringi stringr tokenizers]; }; rslurm = derive2 { name="rslurm"; version="0.6.1"; sha256="19451icfh7snjbbmpzpr1hrdf52q8ijv0ag1di3y55r2la3jxxcf"; depends=[whisker]; }; rsm = derive2 { name="rsm"; version="2.10.3"; sha256="1dcjsn3wa7rqdpixh37vjgk3z5siwlyn70qffp49m3awn258hwpg"; depends=[estimability]; }; @@ -15744,7 +15841,7 @@ in with self; { rsparkling = derive2 { name="rsparkling"; version="0.2.19"; sha256="1rb43lslhlg8jpniirzch8gnl86x6d3shcfp9fpxm0qd3fqrlm6z"; depends=[h2o sparklyr]; }; rsparse = derive2 { name="rsparse"; version="0.5.1"; sha256="15kdllm2lh6xdlv4j0ljyj5pczhx26s9d8cac7953zbb0sd45chz"; depends=[data_table float lgr Matrix MatrixExtra Rcpp RcppArmadillo RhpcBLASctl]; }; rspiro = derive2 { name="rspiro"; version="0.2"; sha256="1gjil39ib9p86a7r3i03h01x2dsc9y283rnp65xvavrzmmgz87b4"; depends=[]; }; - rspm = derive2 { name="rspm"; version="0.2.2"; sha256="04m1sr57lhd37y7svygdpx1r7fvnkimk1gkg2p1jk0pm97v2rdbr"; depends=[]; }; + rspm = derive2 { name="rspm"; version="0.2.3"; sha256="0qfyk4ars77d6a7llbyvyc6095zb4690salgym8kgqlq8dzag3k2"; depends=[]; }; rsppfp = derive2 { name="rsppfp"; version="1.0.4"; sha256="123yv54i58xj4wx9n08qp50mm4l271fm1zhzimrxx22wn2bg8zy5"; depends=[doParallel dplyr foreach igraph stringr tidyr]; }; rsprite2 = derive2 { name="rsprite2"; version="0.2.0"; sha256="1w043qjb959m5646fzpickzq2jxd1qc6mn3k9l0g76vmhzlqr0dy"; depends=[checkmate Rdpack]; }; rsq = derive2 { name="rsq"; version="2.5"; sha256="1r628srxhhf7b51lnj4qrzgbqajkm0ls47a9rzjkvmfq4ax5i73f"; depends=[Deriv lme4 MASS Matrix nlme]; }; @@ -15756,7 +15853,7 @@ in with self; { rstanarm = derive2 { name="rstanarm"; version="2.21.3"; sha256="19rj396q84maxnd9d2xcd5rblg3310xn7sqbd6k18kwf3dvd7wp9"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen RcppParallel rstan rstantools shinystan StanHeaders survival]; }; rstanemax = derive2 { name="rstanemax"; version="0.1.3"; sha256="0myxcqwpk4zq5y1ri14rbsbb19kr8g7fd3mfdsn8vh2yi5xlcqk1"; depends=[BH dplyr ggplot2 magrittr purrr Rcpp RcppEigen rstan rstantools StanHeaders tidyr]; }; rstantools = derive2 { name="rstantools"; version="2.2.0"; sha256="1dsfgi02hps878n3vimfdbzpm4gr5n3ccrmnc61ncrqcp6p0p0fb"; depends=[desc Rcpp RcppParallel]; }; - rstatix = derive2 { name="rstatix"; version="0.7.0"; sha256="0330y8iziffqg8j9j5h9zv4qcdyf8ybhmzxrr9fzq9nc6bf1gbm5"; depends=[broom car corrplot dplyr generics magrittr purrr rlang tibble tidyr tidyselect]; }; + rstatix = derive2 { name="rstatix"; version="0.7.1"; sha256="0c001w1mj8jw7gzmix90wzzb9kj45q173mzl7pmvykm77zpn61ak"; depends=[broom car corrplot dplyr generics magrittr purrr rlang tibble tidyr tidyselect]; }; rstatscn = derive2 { name="rstatscn"; version="1.1.3"; sha256="07w7ixq1faq7mif2ksxcgl8n6ali9h0wx0nb2yz4kbdgvz68r7b9"; depends=[httr jsonlite]; }; rstiefel = derive2 { name="rstiefel"; version="1.0.1"; sha256="063nj6k2qzc5wd1dk6m6ld16sk2vlfa8ic86gc4qkqsla8l82fgg"; depends=[]; }; rstoat = derive2 { name="rstoat"; version="1.0.2"; sha256="0npwv33a7axwhnfyz39nh0x5kk4q3chscings3msx532lzvif0cl"; depends=[curl httr jsonlite keyring]; }; @@ -15766,10 +15863,11 @@ in with self; { rstudioapi = derive2 { name="rstudioapi"; version="0.14"; sha256="1i5g9l2739mlaglzg98iifycx98jlzxj5933qfb8lwmdn63hk7a6"; depends=[]; }; rsubgroup = derive2 { name="rsubgroup"; version="1.1"; sha256="16glxyv6aja7j0vfjccfi8w84wzm2ajfl62l0g5vpl73j7cs6gnk"; depends=[foreign rJava]; }; rsurface = derive2 { name="rsurface"; version="1.1.0"; sha256="1pymbgvr72nqd66wap5wrcizzx2k9bfr6vkxv6dkvjmi8q7jl2gv"; depends=[plotly rsm]; }; - rsurveycto = derive2 { name="rsurveycto"; version="0.1.2"; sha256="1z51crs7xd0xfrpify3vrq0iwajh3ybg4wsyj602glaxjrj1yyrn"; depends=[checkmate cli curl data_table glue httr jsonlite rlang withr]; }; + rsurveycto = derive2 { name="rsurveycto"; version="0.1.4"; sha256="0716zzmfq3an83vij996cnbddmw28yvl1mmmha53f3xpvn109qyn"; depends=[checkmate cli curl data_table glue httr jsonlite rlang withr]; }; rsvd = derive2 { name="rsvd"; version="1.0.5"; sha256="07p2hjmpcwcsang8z9sjkpy94rydcin7m3hyvcgzgm5cd6w8c1p4"; depends=[Matrix]; }; rsvddpd = derive2 { name="rsvddpd"; version="1.0.0"; sha256="0p2cpv3ipkvl27zhncpcyxp6lqw54ncdnxyk659qc24l0fqbw7dc"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; - rsvg = derive2 { name="rsvg"; version="2.3.2"; sha256="1lx84x5dnxj1xdsidwfg9i6fkay7ldarwrbg0gl0f02wajf8ifsz"; depends=[]; }; + rsvg = derive2 { name="rsvg"; version="2.4.0"; sha256="1schf5gfqzvwmaigdsic5va9bbk9ycvcisiyll8xjjw116y9cxyb"; depends=[]; }; + rswipl = derive2 { name="rswipl"; version="8.5.20"; sha256="1qkaq2gnqq42h4f5rcmdmwlb4903fh5b73zrczf85xb4nrdq36sh"; depends=[Rcpp]; }; rsyncrosim = derive2 { name="rsyncrosim"; version="1.4.2"; sha256="15l1g71zq18b2j6dxwdbrcw8x2nkjgijr3zp906xx8g76p6n1hi6"; depends=[DBI gtools lifecycle raster RSQLite]; }; rsyntax = derive2 { name="rsyntax"; version="0.1.4"; sha256="0bmi0qc535scdzrdr9sxnigby5ynw9dk95f99p55plc506z3pfya"; depends=[base64enc data_table digest igraph magrittr png rlang stringi tidyselect tokenbrowser]; }; rsyslog = derive2 { name="rsyslog"; version="1.0.2"; sha256="0sc9jiscabr72fsx1wwjvq44casvhdsinj77wrcp017a4f9i0k5b"; depends=[]; }; @@ -15796,9 +15894,10 @@ in with self; { rtkore = derive2 { name="rtkore"; version="1.6.7"; sha256="0v3p2amkkz137v1vqd1xiv9i1jayd265mwyajjzw56ngm8qpr4jv"; depends=[inline Rcpp]; }; rtmpt = derive2 { name="rtmpt"; version="1.0-0"; sha256="0a8q02vhjhm8l8y58kyyjadwm34ddlm5ayhgqmngkhl9f628s1gm"; depends=[coda data_table loo Ryacas stringr truncnorm]; }; rtodoist = derive2 { name="rtodoist"; version="0.1.0"; sha256="12lh14ps4snlyykhc65nvn8ipic8is8ssmgcx73snmifhrzxgdyb"; depends=[digest dplyr getPass glue httr keyring magrittr purrr]; }; + rtoot = derive2 { name="rtoot"; version="0.2.0"; sha256="1ni9w17balj45p4h83imny4fcjbswspd5h8ii5vlk788jl4qbhmb"; depends=[clipr curl dplyr httr jsonlite tibble]; }; rtop = derive2 { name="rtop"; version="0.5-14"; sha256="1wwllckginnzisapbklpsizy47db24r83xahq4qsd8zhqvv9yj33"; depends=[gstat sp]; }; rtrek = derive2 { name="rtrek"; version="0.3.3"; sha256="1lnjwslx1l0vgysw3m1s83h246grplmv4mdk4m6ym83mrdmkzvhi"; depends=[downloader dplyr ggplot2 jpeg jsonlite magrittr memoise purrr rvest tibble tidyr xml2]; }; - rtrend = derive2 { name="rtrend"; version="0.1.3"; sha256="0figwgxbb1ir7qc4f0138xgj6lry1v6jpq03dyfnp5xsqq3z22yg"; depends=[boot fftwtools ggplot2 magrittr matrixStats plyr Rcpp RcppArmadillo terra]; }; + rtrend = derive2 { name="rtrend"; version="0.1.4"; sha256="1l5vlqjxsgin0pjr4gfdf1ba0zapzjs7c4j4mrjpb8p4hvk3wgzz"; depends=[boot fftwtools lubridate magrittr matrixStats plyr Rcpp RcppArmadillo terra]; }; rtrends = derive2 { name="rtrends"; version="0.1.0"; sha256="04xdggf36m294drb9z8khdjr6fgsg4bwkb4mmbbvqfzjpq4mq4y1"; depends=[dplyr lubridate tidyr]; }; rtrim = derive2 { name="rtrim"; version="2.1.1"; sha256="1l2ijkm4p3nd7n4q1b4y9pdyafgyf76zizpi7hhzw1rr9zkxhff2"; depends=[]; }; rtry = derive2 { name="rtry"; version="1.0.0"; sha256="1sac82z2jk5cp7cr3m6l07b6rk0ims0bsm3pvmk870v014brkim4"; depends=[curl data_table dplyr jsonlite tidyr]; }; @@ -15829,7 +15928,7 @@ in with self; { runstats = derive2 { name="runstats"; version="1.1.0"; sha256="0n9348af60j8a2mwgbafabspb4nm45ry92zlzmynja06zyx8lb2d"; depends=[fftwtools]; }; rusda = derive2 { name="rusda"; version="1.0.8"; sha256="0xx72jjf1pyixwpnvvgx5n2vc5gl46bam1caav043iqki68wb338"; depends=[foreach httr plyr RCurl stringr taxize testthat XML]; }; rusk = derive2 { name="rusk"; version="0.1.1"; sha256="0a6vbcnfzlfq9fmibiy0cwcfix65qhxq4f7wc7d53riga82s00lk"; depends=[dplyr ggforce ggplot2 reshape2 shiny tidyr]; }; - rust = derive2 { name="rust"; version="1.3.13"; sha256="0j17jcg16vdqzga8szg3fhkir9ls7mbbf1zqfp4nymwy3mkmvhm5"; depends=[Rcpp RcppArmadillo]; }; + rust = derive2 { name="rust"; version="1.4.0"; sha256="0np7kzvdpih6d2da2glbwwbfrz2r5ys3jzcz829im82nh8l9h4aw"; depends=[Rcpp RcppArmadillo]; }; ruta = derive2 { name="ruta"; version="1.1.0"; sha256="1qr2ryz55h2j3wlwg0535lhmk2ydm0idfxl07rlfxq1pi32cjms1"; depends=[keras purrr R_utils]; }; rutifier = derive2 { name="rutifier"; version="1.0.4"; sha256="045pr8apd105azs1glpwqrbamglqddxfpml9yrfrlaivz3fjd9l8"; depends=[R_utils]; }; ruv = derive2 { name="ruv"; version="0.9.7.1"; sha256="1n4q9mrp9f644spbns6bbnzmlabrg90hwkdfg3hnm3rxp9b4xid0"; depends=[ggplot2 gridExtra scales]; }; @@ -15840,13 +15939,13 @@ in with self; { rversions = derive2 { name="rversions"; version="2.1.2"; sha256="0q5ip3rkhcxz7472fbqddrw3a2wm31b18w7ax0pi6wc27qiihn6y"; depends=[curl xml2]; }; rvertnet = derive2 { name="rvertnet"; version="0.8.2"; sha256="09lja7dd1rdln7cpd4rn4l3fynm223as3k295dcwf4x26gna7s9d"; depends=[crul dplyr ggplot2 jsonlite maps tibble]; }; rvest = derive2 { name="rvest"; version="1.0.3"; sha256="07hws9infwchy19smrcd9m6c0jii0bdn335yxqk3ramgj5ryyrd4"; depends=[cli glue httr lifecycle magrittr rlang selectr tibble withr xml2]; }; - rvg = derive2 { name="rvg"; version="0.2.5"; sha256="1i0alsr9ahl54gwszvaqz5qgiqs85wwzs5d31z97x315sk3n994j"; depends=[gdtools officer Rcpp rlang xml2]; }; + rvg = derive2 { name="rvg"; version="0.3.0"; sha256="14kihypdp571f5l9711hacxrv5bjp2wwxly9q6k0z9g28nlqakvd"; depends=[gdtools officer Rcpp rlang xml2]; }; rviewgraph = derive2 { name="rviewgraph"; version="1.4.1"; sha256="0j6g9qwxf4bzv9lr7fkgmk60cqid8kmck1x9kjf8il89qahbvsfs"; depends=[rJava]; }; - rvinecopulib = derive2 { name="rvinecopulib"; version="0.6.2.1.2"; sha256="1bnrwxy05cvz1yjs7wpjbzmhl4b33x1y835irf7iczs4ckhk53lx"; depends=[assertthat BH kde1d lattice Rcpp RcppEigen RcppThread wdm]; }; + rvinecopulib = derive2 { name="rvinecopulib"; version="0.6.2.1.3"; sha256="0sn928ng4krllaskv900pxl9s13va79fyxr6n5l6i40qrlglmggr"; depends=[assertthat BH kde1d lattice Rcpp RcppEigen RcppThread wdm]; }; rvkstat = derive2 { name="rvkstat"; version="3.2.0"; sha256="0nk6bx04jnm55k5323w1n4zg7qgds6c53fvdz329kqfsrmpj4wgq"; depends=[dplyr httr jsonlite lgr stringr tidyr]; }; rvmethod = derive2 { name="rvmethod"; version="0.1.2"; sha256="1g2d5pvz5s1sj2kalxaz7nb8874m4113ly809zbimngi1lhg8zi1"; depends=[assertthat locfit]; }; rwa = derive2 { name="rwa"; version="0.0.3"; sha256="11irb6ayr1a1rbmhc9zqwyb1vjfc0fq7imji0lfa30zplwgf1mqh"; depends=[dplyr ggplot2 magrittr tidyr]; }; - rwalkr = derive2 { name="rwalkr"; version="0.5.6"; sha256="11jd3gq0cm2kk8qlk372sj1a30qf4mic25q6jzjn9r68a5syxvpx"; depends=[dplyr hms httr progress tidyr]; }; + rwalkr = derive2 { name="rwalkr"; version="0.5.7"; sha256="1k17wdf4hgk5rii5jh6r5gl17n82zzx1mjfj8bb3n56lf7yr2zhm"; depends=[dplyr hms httr progress tidyr]; }; rwarrior = derive2 { name="rwarrior"; version="0.4.1"; sha256="1s92qy57n92qwlf51hr6v5k2gip5f9jz9q4kpgb3vjql6nykrp4v"; depends=[checkmate cli dplyr glue R6 stringr tibble]; }; rwavelet = derive2 { name="rwavelet"; version="0.4.1"; sha256="092c1h1xyyi2fwg99dgbn1b22cgf8mliizjpc2z7dnravznprr94"; depends=[signal]; }; rwc = derive2 { name="rwc"; version="1.11"; sha256="1qhgkbkp4nz0wq5c4x8232xiszpiyzcdklfgvpnx4cbp3bbfdi4g"; depends=[MASS Matrix mvtnorm raster]; }; @@ -15861,10 +15960,10 @@ in with self; { rwty = derive2 { name="rwty"; version="1.0.2"; sha256="0p0bpq5dk8vjqx8ry364xhaq3rgxa49planapggicg7by2mhaacc"; depends=[ape coda GGally ggdendro ggplot2 phangorn plyr reshape2 viridis]; }; rwunderground = derive2 { name="rwunderground"; version="0.1.8"; sha256="02p26gkicd5v511kb04p1h3wxj57r7j5vr97n3ibywc6ivz7nqxa"; depends=[countrycode dplyr httr lubridate tibble]; }; rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; }; - rxode2 = derive2 { name="rxode2"; version="2.0.10"; sha256="143csj0kjss2mmmnnpnpbdfgbggjas2avd48ijdh97ckmva4wglk"; depends=[backports BH checkmate cli data_table ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo rex rxode2et rxode2ll rxode2parse rxode2random sys]; }; + rxode2 = derive2 { name="rxode2"; version="2.0.11"; sha256="1z038b2p0laxlapwv8mrm9p960yggw9dyqny7da39qzmgj6lqa3z"; depends=[backports BH checkmate cli data_table ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo rex rxode2et rxode2ll rxode2parse rxode2random sys]; }; rxode2et = derive2 { name="rxode2et"; version="2.0.9"; sha256="0ly6mz7xpfyl72vg7xihg874rsmgzn5xh4vf7c6bj660s2aqclnh"; depends=[checkmate cli crayon lotri magrittr Rcpp rxode2parse rxode2random]; }; rxode2ll = derive2 { name="rxode2ll"; version="2.0.9"; sha256="03jb4cka3a98glz2yg4767q68ldrlhcaczayzp58x8i1snbg6d12"; depends=[BH checkmate Rcpp RcppEigen StanHeaders]; }; - rxode2parse = derive2 { name="rxode2parse"; version="2.0.12"; sha256="1yir8wjwhm7xahc47lbdach0695d25yfvwg59qk1lh32qbdp885j"; depends=[BH checkmate crayon dparser knitr qs Rcpp RcppEigen StanHeaders]; }; + rxode2parse = derive2 { name="rxode2parse"; version="2.0.13"; sha256="0bgvf4a99nhw5wjqzivsk55nyq5k82ibqh3qfs1pa4x90w83vsaz"; depends=[BH checkmate crayon dparser knitr qs Rcpp RcppEigen StanHeaders]; }; rxode2random = derive2 { name="rxode2random"; version="2.0.9"; sha256="073s12jbjczj2vwn4spbgxric5vx1737qr4955iiv3b819lbvfsi"; depends=[BH checkmate Rcpp RcppArmadillo rxode2parse sitmo]; }; rxylib = derive2 { name="rxylib"; version="0.2.8"; sha256="1zyzhlckmcnnyhw5y1sga3nz9i9rr1zg2s0f23693d1h26nqia2h"; depends=[BH Rcpp]; }; ryandexdirect = derive2 { name="ryandexdirect"; version="3.6.0"; sha256="0f1z8gp1pxfqx694alj435ihzxvd9ban04b1clzipgdq9la1hza8"; depends=[bitops data_table dplyr httr jsonlite magrittr purrr readr stringr tidyr xml2]; }; @@ -15873,7 +15972,7 @@ in with self; { rytstat = derive2 { name="rytstat"; version="0.3.0"; sha256="1shsc54ss9120ngl59pnd6kqclfh2ilva97xdsx58a9c2kry2dmm"; depends=[cli dplyr gargle httr pbapply rlang snakecase stringr tidyr withr]; }; rzentra = derive2 { name="rzentra"; version="0.1.0"; sha256="1knp1616ck64wgf3r80s1nywdnljc1r9fjvgg531j0fxir04aqkl"; depends=[data_table dplyr httr jsonlite lubridate magrittr purrr]; }; rzmq = derive2 { name="rzmq"; version="0.9.8"; sha256="0lqwxi9ckydvrmmkwy3mhqd28gyajijznbbb4j23mnmi0aspwnl1"; depends=[]; }; - s2 = derive2 { name="s2"; version="1.1.0"; sha256="05n459rp5b1wk826sq3c5d2z1xwgkpfp8m1jnfshvs4gadlfkap3"; depends=[Rcpp wk]; }; + s2 = derive2 { name="s2"; version="1.1.1"; sha256="07c9f8ghfjqdjcw50by3y4j8nbsmmcwd4a3vpcwsxr4mvybckq0w"; depends=[Rcpp wk]; }; s20x = derive2 { name="s20x"; version="3.1-31"; sha256="0gnp703blgawfymd6nxz98w8g7sabagrnk3qc3d3cxj887w83gih"; depends=[]; }; s2dv = derive2 { name="s2dv"; version="1.3.0"; sha256="0g60hby3rq4kpapiimjpyysfid9mr0fkvi4abmr5a5ch35fvazz7"; depends=[abind bigmemory ClimProjDiags easyNCDF easyVerification mapproj maps multiApply NbClust ncdf4 plyr SpecsVerification]; }; s2dverification = derive2 { name="s2dverification"; version="2.10.3"; sha256="10zqw7w8hm7cqbaxy6asflw0i8s5rmki2xhv3d51sm67vb7qn6f4"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; @@ -15887,6 +15986,7 @@ in with self; { sFFLHD = derive2 { name="sFFLHD"; version="0.1.2"; sha256="014gy3nj6gr740z4apw82jh4n7s57zmnr95bm3g9xxnwnb224npq"; depends=[conf_design DoE_base R6]; }; sGBJ = derive2 { name="sGBJ"; version="0.1.0"; sha256="145mxfpl8gpycz8fl1ddlxy61rwpcqlfdrva6yhwzv4awwsv1fvn"; depends=[GBJ survival]; }; sGMRFmix = derive2 { name="sGMRFmix"; version="0.3.0"; sha256="183i3159k2cxpanm09zcy2y1vvjd6185gjjf81c3284prw3aky2c"; depends=[ggplot2 glasso mvtnorm tidyr zoo]; }; + sMSROC = derive2 { name="sMSROC"; version="0.1.0"; sha256="16fllr09mjxqwjm4rq9bc89bl1hz1kq6bs6m75qwwwm73j0xk40h"; depends=[flextable foreach ggplot2 icenReg plotROC RISCA rms survival thregI]; }; sNPLS = derive2 { name="sNPLS"; version="1.0.27"; sha256="0h05crdmwmzax4pwmyxb2z1dagyqb3kybpxc064y1kl8m84kcyvv"; depends=[clickR future future_apply ggplot2 ggrepel ks MASS Matrix pbapply]; }; sRDA = derive2 { name="sRDA"; version="1.0.0"; sha256="0g11smn4adm3b79m9w7wzcragxggkf8rrrsgj2yzdhm1d7zzjwbk"; depends=[doParallel elasticnet foreach Matrix mvtnorm]; }; sRNAGenetic = derive2 { name="sRNAGenetic"; version="0.1.0"; sha256="1cvk40rkbxvr8jhwfqkgdfy150mi56y976pjp2w34rnghry6ql8z"; depends=[DESeq2 futile_logger ggplot2 ggsci plyr VennDiagram]; }; @@ -15925,14 +16025,14 @@ in with self; { safedata = derive2 { name="safedata"; version="1.1.2"; sha256="0fcrx4qd52q5kwsbhnmy1n777fgbyrnl8s0xgsrfv99ws3qknnli"; depends=[chron curl httr igraph jsonlite readxl sf]; }; safejoin = derive2 { name="safejoin"; version="0.1.0"; sha256="0qvra505g7cay3nhq6yqrddb7sw3kx50y8jhgvxi47rxdc3alzba"; depends=[dplyr glue]; }; safer = derive2 { name="safer"; version="0.2.1"; sha256="1lmhaj9y0hi4ybxfkllxl99vsagcg73sy4kkcmlvn3bs69jky1r9"; depends=[assertthat base64enc sodium]; }; - safestats = derive2 { name="safestats"; version="0.8.6"; sha256="1rn3hawh6jn8dszdjr80l15g83n52agch2j3znzb0jmg7qkxd383"; depends=[BiasedUrn boot dplyr hypergeo purrr rlang survival]; }; + safestats = derive2 { name="safestats"; version="0.8.7"; sha256="1jxdnvmf6w8hgd5wcfjcmm796nchig1xizhngbzdgl85yi6nw1yy"; depends=[BiasedUrn boot dplyr hypergeo purrr rlang survival]; }; safetyCharts = derive2 { name="safetyCharts"; version="0.3.0"; sha256="1riyd2rb799rr0j95s3wd45rwq8syfm0xllpihycpak0f56vg1s8"; depends=[dplyr DT forcats ggplot2 htmlwidgets huxtable jsonlite pharmaRTF plotly purrr RColorBrewer rlang shiny stringr Tendril Tplyr]; }; safetyData = derive2 { name="safetyData"; version="1.0.0"; sha256="1spa1wh1z8cqsz8vrkj3abny0xs3qp8d80dla8d031d70hvfkdjc"; depends=[]; }; safetyGraphics = derive2 { name="safetyGraphics"; version="2.1.0"; sha256="0vsyx9d157syz9qp8cnqgf2jgf4jkwyyi3mkf88zg51xl93dx19l"; depends=[datamods dplyr DT htmlwidgets jsonlite magrittr purrr rclipboard rlang safetyCharts safetyData shiny shinyjs sortable stringr tidyr yaml]; }; sageR = derive2 { name="sageR"; version="0.6.0"; sha256="0l8r1y62bjkkjw359dx6h9zd4a9pg90mimihp39vv552jchh7x6y"; depends=[ggplot2]; }; sahpm = derive2 { name="sahpm"; version="1.0.1"; sha256="1grhfxpqx9dyvqd2v91im3jgki2k3abcaal2ix9pcdzz93fc9xlw"; depends=[mvtnorm]; }; salesforcer = derive2 { name="salesforcer"; version="1.0.1"; sha256="19z4q5k0k1c1s2piqjg0z6nrwabap016nbx3jpf51lvmh5lp8ycf"; depends=[anytime base64enc curl data_table dplyr httr jsonlite lifecycle lubridate mime purrr readr rlang rlist tibble vctrs XML xml2 zip]; }; - salso = derive2 { name="salso"; version="0.3.0"; sha256="05nsnhbb5w69064ddmdkpvx7nw2gbd2l446b89myllw0jzaycza3"; depends=[]; }; + salso = derive2 { name="salso"; version="0.3.27"; sha256="10b8hbd3kjdbh38qfnd3pg16z9fzs726ahm6d6ypg4hfjigpzhfg"; depends=[]; }; salty = derive2 { name="salty"; version="0.1.0"; sha256="1dxq62yrkv416fy09l03slc7ci6mnwiyvjlsxhbqnj8yjy3kbhr6"; depends=[assertthat purrr stringr]; }; sambia = derive2 { name="sambia"; version="0.1.0"; sha256="15yz5lrjav5bs8m52crg3l43xmi4gf7wydji76p181ssyg43z2ln"; depends=[dplyr e1071 FNN mvtnorm pROC ranger smotefamily]; }; samc = derive2 { name="samc"; version="2.0.1"; sha256="1b9k5r8hbn6h7i72gib5dkb783a9yqxjrf2mflzgjp88jp79f1cc"; depends=[gdistance Matrix raster Rcpp RcppEigen RcppThread]; }; @@ -15956,7 +16056,7 @@ in with self; { sand = derive2 { name="sand"; version="2.0.0"; sha256="0a8skj1wi1n9zlm7jb5cix1i4ssdzfpj4ym2854ala9jy6qj7g7n"; depends=[igraph igraphdata]; }; sandbox = derive2 { name="sandbox"; version="0.2.1"; sha256="0k86dgfjg7ib79cl6nwxv1g9i15pk501kd8ynlaj3mijpnhgvbal"; depends=[RLumModel]; }; sandwich = derive2 { name="sandwich"; version="3.0-2"; sha256="1d72vwxidsyac9mbyxrm06qds63rzcr82nn4c05466gbajsvcc3f"; depends=[zoo]; }; - sandwichr = derive2 { name="sandwichr"; version="1.0.1"; sha256="114k981kxkf3a8kvzaciimkksnh1g5cyj2ams278r09vi3ic59ia"; depends=[caret dplyr geodetector ggplot2 gridExtra lwgeom sf]; }; + sandwichr = derive2 { name="sandwichr"; version="1.0.2"; sha256="16j4g42m808fb6w8mpb10hac3b0nn5aq12hp9xfgdhx49iai71dr"; depends=[caret dplyr geodetector ggplot2 gridExtra lwgeom sf]; }; sanic = derive2 { name="sanic"; version="0.0.1"; sha256="05fd7jpi7cf9klfh6dqf8wklrjh5q1b3xqddxhdihcsqvcqhg48l"; depends=[Matrix Rcpp RcppEigen]; }; sanitizers = derive2 { name="sanitizers"; version="0.1.0"; sha256="1c1831fnv1nzpq8nw9krgf9fm8v54w0gvcn4443b6jghnnbhn2n6"; depends=[]; }; sanityTracker = derive2 { name="sanityTracker"; version="0.1.0"; sha256="0y041x840sg5c05ksljb1y4xag1cib19q5ygp443k13ryfbcgs9k"; depends=[checkmate data_table]; }; @@ -15965,7 +16065,7 @@ in with self; { sanon = derive2 { name="sanon"; version="1.6"; sha256="0h3l1dzgkddvb3vzg7pcgwrgidphy73jys2h49v84nbfvqr6l85z"; depends=[]; }; sansa = derive2 { name="sansa"; version="0.0.1"; sha256="1p5qv94f62dxzkbl1jn1fx3vksyhqqa3w2ipqwiflaxlk7q9k5pq"; depends=[data_table FNN ggplot2]; }; santaR = derive2 { name="santaR"; version="1.2.3"; sha256="0xyvfanqid5f114m7akhh0pi9mwy9bj8iqfzxpkkvj6ak1ib0i5y"; depends=[bslib doParallel DT foreach ggplot2 gridExtra iterators pcaMethods plyr reshape2 shiny]; }; - santoku = derive2 { name="santoku"; version="0.8.0"; sha256="0xqbc1qbjnpd39z3ahvmpdqw14f0ym0l62gjc8fg8qissiwv0r1q"; depends=[assertthat glue lifecycle Rcpp rlang vctrs]; }; + santoku = derive2 { name="santoku"; version="0.9.0"; sha256="08pl03b94i3p3zza071ai62zb21rxs18vb0dscfrnyy383pxh5cy"; depends=[assertthat glue lifecycle Rcpp rlang vctrs]; }; sanzo = derive2 { name="sanzo"; version="0.1.0"; sha256="1fqsx2mgjsy6vjvsp2avi2i5cw7cjs2p53l1z6hb3bzid3067s87"; depends=[]; }; saotd = derive2 { name="saotd"; version="0.3.0"; sha256="11ql731w3rc4spmd2ii52r49sxymxkf7wj2ngdvb8pcs4idar059"; depends=[dplyr ggplot2 ggraph igraph ldatuning lubridate magrittr reshape2 rtweet scales stringr tidyr tidytext topicmodels widyr]; }; sapevom = derive2 { name="sapevom"; version="0.2.0"; sha256="0vq4rx85pdjc0wjxjf7wj8j5qs3cb20hwhlc2ypbgrlw7zkcp1z4"; depends=[]; }; @@ -15975,14 +16075,15 @@ in with self; { sarima = derive2 { name="sarima"; version="0.9.1"; sha256="0gj3z7471153g1cyclmkh9lcc2zqpv2d4yzq6k6hi2pxmb5hihsq"; depends=[Formula lagged ltsa numDeriv PolynomF Rcpp RcppArmadillo Rdpack]; }; sarp_snowprofile = derive2 { name="sarp.snowprofile"; version="1.3.1"; sha256="1r20gmrzfgxhi9f4x9y5kclnyy6mr19jbga7fly1z501ch71n90i"; depends=[data_table xml2]; }; sarp_snowprofile_alignment = derive2 { name="sarp.snowprofile.alignment"; version="1.2.1"; sha256="11c9wq7rr05jq6v6rcg3wy3h7w44clbxx2mysrqj50w38ih3r29b"; depends=[data_table dtw sarp_snowprofile]; }; + sarp_snowprofile_pyface = derive2 { name="sarp.snowprofile.pyface"; version="0.1.3"; sha256="0nnl4bdvvbn6wf3zhv7n710y8fn07rnsb2f9j9lkr5g9a52356bf"; depends=[data_table reticulate sarp_snowprofile]; }; sars = derive2 { name="sars"; version="1.3.5"; sha256="07jaagf3q8x4iwjh1avy5vzv9y62ipnjd43acbw0hizh983qlq3r"; depends=[AICcmodavg cli crayon doParallel foreach nortest numDeriv]; }; sarsop = derive2 { name="sarsop"; version="0.6.13"; sha256="0dfpqmvqjr2f7amqmms4wliccdlk37c53khrkb6z9dvhh88i4gzv"; depends=[BH digest Matrix processx xml2]; }; sas7bdat = derive2 { name="sas7bdat"; version="0.6"; sha256="13ybq0r5bza6pcih9876pmccggn5bm7mzmn071qs46sbbpq40kyk"; depends=[]; }; - sasLM = derive2 { name="sasLM"; version="0.9.2"; sha256="17c9l4v7rkyf65awvkdijz4lk101mclns122w4li63w5nhxckpyl"; depends=[mvtnorm]; }; + sasLM = derive2 { name="sasLM"; version="0.9.3"; sha256="1v5n0vm68fq683myfd105av11h7fw732f0n66kjmgxfkkgx3nqxy"; depends=[mvtnorm]; }; sasMap = derive2 { name="sasMap"; version="1.0.0"; sha256="11vhhxhakqm1gsb3p4s4966sapmrqfyw79zfppbx5lnqi3xr0ngn"; depends=[readr stringi stringr]; }; sasfunclust = derive2 { name="sasfunclust"; version="1.0.0"; sha256="1ba7g3rxyq5h806na6bsdvh6mw6hydgcf3740qkfd4d5fx7m0mq4"; depends=[fda MASS Matrix matrixcalc mclust Rcpp RcppArmadillo]; }; - sass = derive2 { name="sass"; version="0.4.2"; sha256="0iln5ky6k1ix0gddlyw4rr2953kc499x66bcyi9yiyp91nfh82dl"; depends=[fs htmltools R6 rappdirs rlang]; }; - sassy = derive2 { name="sassy"; version="1.0.8"; sha256="0sswnif8jg4zlvs2r867pjz670q63p20w4mrxwr7x8f9m7ll7wv6"; depends=[common fmtr libr logr reporter]; }; + sass = derive2 { name="sass"; version="0.4.4"; sha256="0hk5svmpbhx9q3ni3qll2pa7q3pfc0zxv616kp62r6vakn1az16j"; depends=[fs htmltools R6 rappdirs rlang]; }; + sassy = derive2 { name="sassy"; version="1.1.0"; sha256="0iimj7wncdsx6h0fk4cg79dqbhyrlg76bl8jkz8rl2ac6ywdyz2p"; depends=[common fmtr libr logr reporter]; }; sate = derive2 { name="sate"; version="1.1.0"; sha256="0d1b0gp5abh5g7a25ff40xdnncrl2afjnlcc56dbhqkk43gjah17"; depends=[MASS]; }; satellite = derive2 { name="satellite"; version="1.0.4"; sha256="0z6wh0nmzxgizd8rzafkq8hkxx9s8lkaqins68697284lxvrbrwr"; depends=[plyr raster Rcpp terra]; }; satin = derive2 { name="satin"; version="1.1.0"; sha256="17knbgy89ljp607mkhs62fx9p6b40iqqzgpxr9karlf07l48c0ya"; depends=[geosphere maps ncdf4 PBSmapping sp splancs]; }; @@ -16001,12 +16102,12 @@ in with self; { sbmSDP = derive2 { name="sbmSDP"; version="0.2"; sha256="1sl46lqi6w0s7ghv4bywhic56cm2vib3kawprga760m6igargx4y"; depends=[Rcpp RcppArmadillo]; }; sbo = derive2 { name="sbo"; version="0.5.0"; sha256="00pnvpcl6441gf8npf6b6cvzxh0kq4qbfxggjiqdny6lq2nl0d47"; depends=[dplyr Rcpp rlang testthat tidyr]; }; sboost = derive2 { name="sboost"; version="0.1.2"; sha256="1vh3hk15chkyrkpnj4i40542bck9ny45g424bncxdxl9fgxc4nhk"; depends=[dplyr Rcpp rlang]; }; - sbtools = derive2 { name="sbtools"; version="1.1.20"; sha256="0kzdi3lynzk2ws975rgc6ijddyp24b6xgsz1g7nrg32462k9m5qj"; depends=[cli curl httr jsonlite mime]; }; + sbtools = derive2 { name="sbtools"; version="1.1.21"; sha256="1b52lq2xdwaz37jnnwi7lp151448g2gr2nykm32bdwbrxm68smx1"; depends=[cli curl httr jsonlite keyring mime]; }; sbw = derive2 { name="sbw"; version="1.1.5"; sha256="10ks912f4xiy0i484vf24w5zz9n7kxlcy77ikz95p8vr5zlqkvgc"; depends=[MASS Matrix quadprog slam spatstat_geom]; }; - scAnnotate = derive2 { name="scAnnotate"; version="0.0.4"; sha256="0fz3bchszykqjb6dr3vybxzrwia5lm5rb87hi1f2ajz9z8i8vlyc"; depends=[glmnet harmony MTPS Seurat]; }; + scAnnotate = derive2 { name="scAnnotate"; version="0.1.1"; sha256="05akid10d1h8636v5pic4kxn0dby3a864yjwbd5rv6zc4wxq1znr"; depends=[glmnet harmony MTPS Seurat]; }; scBio = derive2 { name="scBio"; version="0.1.6"; sha256="1bpizxm9fbxd4sfapi1ayfg5csacb4dvqbvappd79jkq4mrsk12q"; depends=[doSNOW fields foreach LiblineaR limma raster sp]; }; scCAN = derive2 { name="scCAN"; version="1.0.4"; sha256="1w509y629xpqd748k7rghv8plav0jyyigfcf3n2c1m2a6qhh338x"; depends=[FNN purrr scDHA]; }; - scCATCH = derive2 { name="scCATCH"; version="3.2"; sha256="1nc9z7q5za5p8h9705zzpmji05y8xynm9mc6s9w8h3dd52gpmc4w"; depends=[crayon Matrix progress reshape2]; }; + scCATCH = derive2 { name="scCATCH"; version="3.2.1"; sha256="00z1lqs04i251gkp9c4iih9hspkgw7jafj66gb6rj1ql6kqhkny1"; depends=[crayon Matrix progress reshape2]; }; scDHA = derive2 { name="scDHA"; version="1.2.0"; sha256="16vhfa2ja3bnkq86ls62ylkwks78n36qmrxzazyqih1n2n0z3ckm"; depends=[cluster clusterCrit coro doParallel foreach igraph Matrix matrixStats Rcpp RcppAnnoy RcppArmadillo RcppParallel RhpcBLASctl torch uwot]; }; scDIFtest = derive2 { name="scDIFtest"; version="0.1.1"; sha256="1hq68g7zf7372cach2qfc7l1l8gh5aqkp66k0cxjnrhmvvb1qcax"; depends=[mirt sandwich strucchange zoo]; }; scDiffCom = derive2 { name="scDiffCom"; version="0.1.0"; sha256="1xgrsfrh06n8hzyqv3j99kjk6l85khg099vjdsf7kx9f5p92iixd"; depends=[data_table DelayedArray future future_apply magrittr Seurat]; }; @@ -16018,7 +16119,6 @@ in with self; { scMappR = derive2 { name="scMappR"; version="1.0.9"; sha256="1b2jrbqy9dcvv9ng7mz8xxggqc5iy4n0h59xksin3m9gvpvsc0sw"; depends=[ADAPTS downloader ggplot2 gProfileR gprofiler2 GSVA limSolve pbapply pcaMethods pheatmap reshape Seurat]; }; scModels = derive2 { name="scModels"; version="1.0.3"; sha256="0wc7mif6q7li7qqsxc7s5s2jgg4ahwf348xzb5zpr2nhbcb5s4x6"; depends=[gamlss_dist Rcpp]; }; scOntoMatch = derive2 { name="scOntoMatch"; version="0.1.0"; sha256="16yw415jbzk28nq050b0xw0rhv35192vnm7ihhi1gpa69aqc0v9y"; depends=[ontologyIndex ontologyPlot purrr]; }; - scPOP = derive2 { name="scPOP"; version="0.1.0"; sha256="0bi9dmqj9cd8f09qmfl3d65922xn3j3jipxi6615jbk6bz67kkh9"; depends=[cluster Matrix RANN Rcpp RcppArmadillo]; }; scPloidy = derive2 { name="scPloidy"; version="0.3.0"; sha256="0wbrpr6zwmhihbqsa5f4mfv05vx7v53bhgr4cx88k0p5jgzb6fs5"; depends=[dplyr GenomicRanges magrittr matrixStats mixtools rlang Rsamtools]; }; scRNAstat = derive2 { name="scRNAstat"; version="0.1.1"; sha256="0yv5np7jafmygg77bwisrha5y2rdb1va906ngzs4zc8mvxr0dvlm"; depends=[clustree dplyr ggplot2 magrittr Matrix patchwork Seurat stringr]; }; scRNAtools = derive2 { name="scRNAtools"; version="1.0"; sha256="0x0lniqhq6q87y08kkkyvmk1g5b8i73hm3h86ba8rcv0v0n7ap9a"; depends=[ALL ConsensusClusterPlus corrplot edgeR foreach ggplot2 ggthemes Hmisc igraph lattice limma PerformanceAnalytics plyr reshape2 Rmisc Rtsne scatterplot3d survival TPEA]; }; @@ -16038,7 +16138,7 @@ in with self; { scam = derive2 { name="scam"; version="1.2-13"; sha256="0qp5g24zwb51x85z8g5x4n9wmqsf33hzwnahkj89rvl38lwq1z9k"; depends=[Matrix mgcv]; }; scan = derive2 { name="scan"; version="0.55"; sha256="0vzd50dghmdvzp9bklb6sz6cf13am98v25d5jbn32nsm2wm65myj"; depends=[car kableExtra knitr magrittr mblm meta nlme readxl yaml]; }; scanstatistics = derive2 { name="scanstatistics"; version="1.1.0"; sha256="1982xwnjs6xiqys385m5gn5a49xy2v3smd6ghw8814gx60bgw6w8"; depends=[dplyr ismev magrittr plyr Rcpp RcppArmadillo sets tibble tidyr]; }; - scapGNN = derive2 { name="scapGNN"; version="0.1.1"; sha256="1jhgjbxsaaxss5vca4znllf59rllbz0a5mhq4isj1asdjkv6zh0b"; depends=[ActivePathways AdaptGauss coop igraph mixtools reticulate]; }; + scapGNN = derive2 { name="scapGNN"; version="0.1.3"; sha256="15j0xqxyidlmgq0m66y59ppbi8vn1qxicrrm1dfybg2yn0vb0kcj"; depends=[ActivePathways AdaptGauss coop igraph mixtools reticulate]; }; scape = derive2 { name="scape"; version="2.3.3"; sha256="1jb5c335qsbrpsgngs8c1qlibyb7zvvx6mwydfhm1plx4pkcq0n1"; depends=[coda Hmisc lattice]; }; scapesClassification = derive2 { name="scapesClassification"; version="1.0.0"; sha256="0kwl9mbzcmn5qzqbzabf2igbhwbf5m1b1wa8rhm8mfv2qz7psyf2"; depends=[terra]; }; scar = derive2 { name="scar"; version="0.2-2"; sha256="0l2vm6aqi5lrc25akmn826v0zhygys9s167k9dphqn8l3yvlvqbj"; depends=[]; }; @@ -16054,15 +16154,16 @@ in with self; { sccore = derive2 { name="sccore"; version="1.0.2"; sha256="12gm7pb6xbvf9kdsgl7ldw1c54ga9fgk99ps2kx2cq91q9m0ld4r"; depends=[dplyr ggplot2 ggrepel igraph irlba magrittr Matrix pbmcapply pROC Rcpp RcppArmadillo RcppEigen RcppProgress rlang scales tibble uwot withr]; }; sccr = derive2 { name="sccr"; version="2.1"; sha256="0cjlzv92b5qrs43d3ry33zcggiqvsqaf8wq4k19ws9lvgh59b62v"; depends=[dplyr]; }; scdensity = derive2 { name="scdensity"; version="1.0.2"; sha256="173xm3bf8vxl30zk4n451al7m003byg9q4d1l1pfyfa4xnv8qdg9"; depends=[lpSolve quadprog]; }; - scdhlm = derive2 { name="scdhlm"; version="0.6.0"; sha256="1x0z1yl8fmnnpm9h1nwlczbk2vnmqpq5sg5l6yn2z35j4wn458qz"; depends=[lmeInfo nlme readxl]; }; + scdhlm = derive2 { name="scdhlm"; version="0.7.0"; sha256="1sf8pgj4zq45lpv37c6h3gpp8qbmszwzlcr41bjki75mqbariksd"; depends=[dplyr lmeInfo magrittr nlme readxl rlang tidyselect]; }; + scellpam = derive2 { name="scellpam"; version="1.4"; sha256="1hhl3mikxbzvvw2xb3vhjw7gly503g2mnjblr9z257dgc6zgxflg"; depends=[cluster memuse Rcpp]; }; scgwr = derive2 { name="scgwr"; version="0.1.2-21"; sha256="15pwasxkwirr2wwf8w02cy8zx0bqavzyfixjz3m37c1llrhddpka"; depends=[dplyr FNN optimParallel sp spData]; }; schemr = derive2 { name="schemr"; version="0.1.0"; sha256="0w29la0mh5bvij52r8jgfl47cgm0xc53702ms5r4jv0pdd49qlg8"; depends=[apcluster dplyr ggplot2 magrittr OpenImageR purrr stringr]; }; - schoRsch = derive2 { name="schoRsch"; version="1.9.1"; sha256="0f823z48s50jhcphqqivchrmkiwqg25nc01c17kjpzzryd2fi5zs"; depends=[]; }; + schoRsch = derive2 { name="schoRsch"; version="1.10"; sha256="0bf4lahfzi6dchqfnykh4saiagcka12h82d9mvd1ddv5phmbyi10"; depends=[]; }; schoenberg = derive2 { name="schoenberg"; version="2.0.2"; sha256="17pbw9266r9lv9blygmvq9285kcrcy07jaqrj3zfa2pg0zyvhjvm"; depends=[crayon]; }; scholar = derive2 { name="scholar"; version="0.2.4"; sha256="12r4j1s71szh77nsnqzsi0q5cvkp0cyr2fxzcagk02f42bnp5aww"; depends=[dplyr ggplot2 ggraph httr R_cache rlang rvest stringr tidygraph xml2]; }; schoolmath = derive2 { name="schoolmath"; version="0.4.1"; sha256="16vd1in016sqxllxmkvs0bav9drk6lynrcqf9d24y77yhm103q76"; depends=[]; }; schrute = derive2 { name="schrute"; version="1.0.1"; sha256="14mjz63g2z4m4rgh7yf05gz5cjcriqvwgrd0an9xzj9pk36arisb"; depends=[magrittr]; }; - schtools = derive2 { name="schtools"; version="0.3.0"; sha256="0l601blj6c91nj79xvq1xv2yl038xrln350mykxfd9lp74fl1x3f"; depends=[dplyr formatR glue rlang stringr tidyr]; }; + schtools = derive2 { name="schtools"; version="0.3.1"; sha256="0d41zb546kf0yz958v486vbwymx2vn2jgpbqqghqly8hb9bfkg77"; depends=[dplyr formatR glue rlang stringr tidyr]; }; schumaker = derive2 { name="schumaker"; version="1.2.1"; sha256="15i39lzkd1qggd35sp39vy922y3y1n9drjkidz7asniv1miali6j"; depends=[]; }; sciRmdTheme = derive2 { name="sciRmdTheme"; version="0.1"; sha256="17pyvi38qg9r2yshw02car7d08qda6mscxkhh5jdm4ncc91y9i17"; depends=[]; }; scico = derive2 { name="scico"; version="1.3.1"; sha256="1f2czfhzdpi5dqjbxvbrrcnxjpylc5zzghj70ihlh2agq3n9hw5g"; depends=[scales]; }; @@ -16071,19 +16172,21 @@ in with self; { scifigure = derive2 { name="scifigure"; version="0.2"; sha256="1zc88r1lnb0cws130hq4rjc34rrp6zkmi8yhkwsm3vkznbhi4iba"; depends=[]; }; sciplot = derive2 { name="sciplot"; version="1.2-0"; sha256="097zcgjsv54f6wd8fjwh2xb406j6yrw94v9pcxa0zln1q7fs93vk"; depends=[]; }; scipub = derive2 { name="scipub"; version="1.2.2"; sha256="1k06pmpwpmgiglqhh9ca67m74vb961dczc9394xnwfszq9g3gz1n"; depends=[dplyr forcats gghalves ggplot2 purrr stringr tibble tidyr tidyselect]; }; + scistreer = derive2 { name="scistreer"; version="1.0.1"; sha256="1p8nga48lr87rdrkqcc6y4zgr85dc4cwqplyvp5s2i58jz5n296b"; depends=[ape dplyr ggplot2 ggtree igraph parallelDist patchwork phangorn Rcpp RcppArmadillo RcppParallel reshape2 RhpcBLASctl stringr tidygraph]; }; sclr = derive2 { name="sclr"; version="0.3.1"; sha256="10pihx35889w509ijbyq5hzslk9n7kakjnfscg7p0dq198nbpyca"; depends=[broom dplyr purrr rlang tibble]; }; scoper = derive2 { name="scoper"; version="1.2.1"; sha256="1f9bdw7w7zgbjhxxxpld8jss7kbr4k9ksxwzr94wzvapgg06v10p"; depends=[alakazam data_table doParallel dplyr foreach ggplot2 Rcpp rlang scales shazam stringi tidyr]; }; scopr = derive2 { name="scopr"; version="0.3.4"; sha256="1zskhhbdgijkbh4jrvlfd46q4s8fyycqcgcx3lzyvi5xvv6h0sxg"; depends=[behavr curl data_table memoise readr RSQLite stringr]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; - scorecard = derive2 { name="scorecard"; version="0.3.9"; sha256="0ljbxf73ab65mzrn2c9g1l5qvw1hgybr8syr806xnmxxb1ar7nqm"; depends=[data_table doParallel foreach ggplot2 gridExtra openxlsx stringi]; }; + scorecard = derive2 { name="scorecard"; version="0.4.0"; sha256="0s8z8aav71z70hfqqsg9fann4v3k508iij1l4wq8ng8jlpvjiswz"; depends=[cli data_table doParallel foreach ggplot2 gridExtra openxlsx stringi]; }; scorecardModelUtils = derive2 { name="scorecardModelUtils"; version="0.0.1.0"; sha256="09znaxrv14m58hsk5pac458xbpcsidc6ygcsw4q9j0p4yd80qbvl"; depends=[car e1071 gbm ggplot2 partykit randomForest reshape2 sqldf stringr]; }; scorepeak = derive2 { name="scorepeak"; version="0.1.2"; sha256="1g9n7kjqb9qk5b7hw8ysrc069w9dzc4z29ay6z1kbm0v4kkzp7bi"; depends=[checkmate Rcpp]; }; scoring = derive2 { name="scoring"; version="0.6"; sha256="114jlpbnm15fdan5lr40adxdzwajy3yhdw6dm4kvkvky6qhcx7q5"; depends=[]; }; scoringRules = derive2 { name="scoringRules"; version="1.0.2"; sha256="16b9ibjyp2513hmwz63qbcsaddsvp7j894q4bn33dqhn7zxzdfrk"; depends=[knitr MASS Rcpp RcppArmadillo]; }; scoringTools = derive2 { name="scoringTools"; version="0.1.2"; sha256="11bxmpqiqqkjyvmyxlnzz7j64jmy1pjw06128vvydmqhjxxyawjh"; depends=[discretization dplyr magrittr sqldf]; }; + scoringfunctions = derive2 { name="scoringfunctions"; version="0.0.5"; sha256="140fz1zlx8841xnx4m74lkl7x18ysksqyikjxl60vwmaidbcfhhv"; depends=[]; }; scoringutils = derive2 { name="scoringutils"; version="1.0.1"; sha256="1fbppgjiv0qcypcnnrmyrilga5hdlq2l2iy3fq7i73h2y6a8p5r9"; depends=[data_table ggdist ggplot2 rlang scoringRules]; }; scout = derive2 { name="scout"; version="1.0.4"; sha256="0vr497g7g1xhf75cwjbjsns2fvdzy86iibbf5w0g2xylw82s4lh2"; depends=[glasso]; }; - scpi = derive2 { name="scpi"; version="2.0.0"; sha256="0an7hyrmiwz040sqdwyzs1m654rxr2jv6dl8jqczxmal7ya7jxhf"; depends=[abind CVXR doRNG doSNOW dplyr ECOSolveR fastDummies foreach ggplot2 magrittr MASS Matrix purrr Qtools reshape2 rlang stringr tibble tidyr]; }; + scpi = derive2 { name="scpi"; version="2.0.1"; sha256="1msni5mfz8gkf9ff7c06w99p86l85v7in2kh73vnfzykw561x944"; depends=[abind CVXR doRNG doSNOW dplyr ECOSolveR fastDummies foreach ggplot2 magrittr MASS Matrix purrr Qtools reshape2 rlang stringr tibble tidyr]; }; scpoisson = derive2 { name="scpoisson"; version="0.0.1"; sha256="0v8is1y9mqbvcvhqay1a0ycbhfxwxqkxifmbxb0sjzxg02mla65x"; depends=[broom dplyr ggplot2 glmpca magrittr Matrix matrixStats purrr Rdpack Seurat SeuratObject tidyr WGCNA]; }; scqe = derive2 { name="scqe"; version="1.0.0"; sha256="1113zbc2jyq03fh8l1h6yidf25hh5dcqrk6wkk9flqwnbrvfkwrr"; depends=[AER ggplot2]; }; scquantum = derive2 { name="scquantum"; version="1.0.0"; sha256="0v263qxf3qp7hra3l8fyw8a625z9ym2h2zg5b9lsysdiznbi9bww"; depends=[]; }; @@ -16096,7 +16199,7 @@ in with self; { scrm = derive2 { name="scrm"; version="1.7.4-0"; sha256="1kn6f0ypkl50jvnxz9sc6nyb0cdcnaccgka984jfsniky16f6sn9"; depends=[Rcpp]; }; scrobbler = derive2 { name="scrobbler"; version="1.0.2"; sha256="14nnqcjrcc5xcdn2swwj0j2jsw5maayd9ba06s6d5i88png2xhv5"; depends=[httr jsonlite]; }; scrollrevealR = derive2 { name="scrollrevealR"; version="0.2.0"; sha256="0k8ffapwxpb25wphm76arma095hrh3wf0gpkx1z6g4rplahf4jxa"; depends=[glue htmltools]; }; - scrutiny = derive2 { name="scrutiny"; version="0.2.2"; sha256="0wz9zjfww6lgabsp6m9fvjrnf351srhdxa5cmih5lj9vy296nmk5"; depends=[cli dplyr glue magrittr purrr rlang stringr tibble]; }; + scrutiny = derive2 { name="scrutiny"; version="0.2.3"; sha256="13b257sl375rp2nzp2h2p1zlw7xcvxk59blnyn7pf9snmkncsi7j"; depends=[cli dplyr glue magrittr purrr rlang stringr tibble]; }; scrypt = derive2 { name="scrypt"; version="0.1.4"; sha256="12q9d4m7flbvlgssvjh1ga4jswkmqjfshf6pna6qk6v087gmzdsj"; depends=[Rcpp]; }; scryr = derive2 { name="scryr"; version="1.0.0"; sha256="040x2qvgrr8j5k3y2g24kngjys271radqhh3jsqi07dhg9bybr5q"; depends=[dplyr httr purrr tibble]; }; scs = derive2 { name="scs"; version="3.0-1"; sha256="04srf33zw4dxv22b1h5qwjch5yg7hrvk4iq8yvxqnbr8qzp1x26n"; depends=[]; }; @@ -16108,7 +16211,7 @@ in with self; { sda = derive2 { name="sda"; version="1.3.8"; sha256="14cpl7zj9aamdwyc8c9s7hnf660srvjv66lpnsm837d4r7k19icv"; depends=[corpcor entropy fdrtool]; }; sdafilter = derive2 { name="sdafilter"; version="1.0.0"; sha256="0y692j25pln46dp6xvaq17fkym0461yqfa6rv5avfw2b240k8jiq"; depends=[glasso glmnet huge POET]; }; sdam = derive2 { name="sdam"; version="1.1.4"; sha256="0mqhg47z4knzcy1lxcd9fv8qk8ayszbl6sbxnmq5z0hx6wabkdf8"; depends=[grImport2 multiplex]; }; - sdamr = derive2 { name="sdamr"; version="0.1.0"; sha256="19mgdipp2fwv0c8g5fc02j4vdnc6v4x0204570swv8mkb2r2acqy"; depends=[car dplyr ggplot2]; }; + sdamr = derive2 { name="sdamr"; version="0.2.0"; sha256="1hcgdysa62mrzk2wmy366jpwab65m3qyi8bh7kzgifpwwxh5pv9k"; depends=[car dplyr ggplot2]; }; sdcHierarchies = derive2 { name="sdcHierarchies"; version="0.19.3"; sha256="1nnvn8mfmymfx7f7vi9hdqp03vdhvngmik1jd4magnc6ghrpcdai"; depends=[cli data_table jsonlite Rcpp rlang shiny shinyjs shinythemes shinyTree]; }; sdcLog = derive2 { name="sdcLog"; version="0.5.0"; sha256="0ssjgpfg3z8j9s47nmiw6a5jcsi4pppdxidvzm3sryjz4klallwg"; depends=[broom checkmate cli data_table mathjaxr]; }; sdcMicro = derive2 { name="sdcMicro"; version="5.7.4"; sha256="1jy9i0akyrzvbividfac0ppgfndf6n190lgylja26b8fdlrwhdvy"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase shiny shinyBS VIM xtable]; }; @@ -16139,8 +16242,8 @@ in with self; { seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seastests = derive2 { name="seastests"; version="0.15.4"; sha256="1xy2hacd57v75y5snhn4al7bi71wr994jy6m2sdr6qzzsd5pbgpc"; depends=[forecast xts zoo]; }; seawaveQ = derive2 { name="seawaveQ"; version="2.0.2"; sha256="1x4vvassal1lwb9xnwisrhlx2maaqxl84h7klfy8yg9x80fdrhsw"; depends=[lubridate plyr reshape2 rms survival]; }; - secr = derive2 { name="secr"; version="4.5.7"; sha256="0vhsik8p8f3cvmlxq1ff3qh5jgzy5s0z6savrsmfb56vf3l5462p"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sf stringr terra]; }; - secrdesign = derive2 { name="secrdesign"; version="2.6.0"; sha256="0iaby8qpik6g5060m3cykrqslj8cl1ddg0hsqy6vjgy6gg9r6ach"; depends=[abind secr]; }; + secr = derive2 { name="secr"; version="4.5.8"; sha256="1kdl6lshd00zvfd77p66qqinb7qwxhaqkb38dpvpmr8xc75r82lg"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sf stringr terra]; }; + secrdesign = derive2 { name="secrdesign"; version="2.7.0"; sha256="0a0m78xf2avy4yx7zc8rmzjzai2pi4iy5bzh80yrc95s3m0nn24g"; depends=[BH kofnGA Rcpp RcppArmadillo secr sf]; }; secret = derive2 { name="secret"; version="1.1.0"; sha256="063gpyc2s2l6zw1j8b8ppzsv9kjsf0s77s5wcn7ipmwkj8qr2g4b"; depends=[assertthat curl jsonlite openssl rprojroot]; }; secrettext = derive2 { name="secrettext"; version="0.1.0"; sha256="129v524yyb464mcij7hvzv05cxliaz5nm7v30g9g9ppskcdqhsx2"; depends=[dplyr magrittr rlang stringr testthat tidyr]; }; secrlinear = derive2 { name="secrlinear"; version="1.1.4"; sha256="1qa0vapnhiblz57jrbj9zd1gdmxc1nzzq41b4464373pjfvm5wvj"; depends=[igraph maptools MASS rgdal secr sp]; }; @@ -16148,7 +16251,7 @@ in with self; { secuTrialR = derive2 { name="secuTrialR"; version="1.0.9"; sha256="0g84jrh42kx3w1m6spw80rwx7vzjf7x1qabqap4h6ayrczacxq4r"; depends=[dplyr haven lubridate magrittr purrr readr readxl rlang stringr tibble tidyr]; }; secure = derive2 { name="secure"; version="0.6"; sha256="1i0csl90w4qvhpnrxwrdhxzlmjw7hn30py36r41cd28igycz2bw3"; depends=[MASS Rcpp RcppArmadillo]; }; sedproxy = derive2 { name="sedproxy"; version="0.7.3"; sha256="176wyi8jvk15r4k7hdax2ad37rsbhr54jlsj0y7p8ayhk1vd89am"; depends=[dplyr ggplot2 mvtnorm readr rlang shiny tidyr]; }; - see = derive2 { name="see"; version="0.7.3"; sha256="0k7r8pqmngbv389y5hcri27ld9ygkhfhxj185vfkcnnj63m1ff2z"; depends=[bayestestR datawizard effectsize ggplot2 insight parameters]; }; + see = derive2 { name="see"; version="0.7.4"; sha256="0772ahq11zzrwx8wwd7krg0a3phx28fli6gcs78rrwl8l2cl8y42"; depends=[bayestestR correlation datawizard effectsize ggplot2 insight modelbased parameters performance]; }; seeclickfixr = derive2 { name="seeclickfixr"; version="1.1.0"; sha256="1agsqq2msrqrssffc6liyjjs6nqm90xy2inlcjbkdac5dhinjc4n"; depends=[jsonlite RCurl]; }; seecolor = derive2 { name="seecolor"; version="0.1.0"; sha256="1ijxyys8pwlm99ynmv86cgn8pzz1ivaxzh3rq1akzv17nz93jv61"; depends=[crayon dplyr fansi ggplot2 magrittr purrr rstudioapi stringr]; }; seedCCA = derive2 { name="seedCCA"; version="3.1"; sha256="01v8hwhw5pap69n11czn0ma22vakhi3kfbly0rzasw9fsvf66xhg"; depends=[CCA corpcor]; }; @@ -16166,7 +16269,7 @@ in with self; { segen = derive2 { name="segen"; version="1.1.0"; sha256="1l60rb1w0rfp1rv5favi4yxzyqs1nb1881mcz66xv789r3awhp11"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr Rfast scales tictoc]; }; segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; }; segmenTier = derive2 { name="segmenTier"; version="0.1.2"; sha256="01xbcddinjbkbqkwq2lnsxd3gw8fxys58p498dc2lw8psz3g2wgc"; depends=[Rcpp]; }; - segmented = derive2 { name="segmented"; version="1.6-0"; sha256="0sg59j59kz3zrwl3mi4ps1qw3hvwljygqa1d652vjdsx9w57zbvb"; depends=[MASS nlme]; }; + segmented = derive2 { name="segmented"; version="1.6-2"; sha256="0livckkhci3w1x9xai2m0a30fj06qsks2qds7y5jr9vwx03jqg21"; depends=[MASS nlme]; }; segmentr = derive2 { name="segmentr"; version="0.2.0"; sha256="0q5kxxiw0akpk7w2a2l9zp7v4pvqblzdvrld5fjyl5f6h8hsb40z"; depends=[foreach glue Rcpp]; }; segmetric = derive2 { name="segmetric"; version="0.2.0"; sha256="1nirb5gnbs3vw74fmpapng0bqqwrz5a6c59apkg8s8x0vqxwhfvx"; depends=[magrittr sf units]; }; segregation = derive2 { name="segregation"; version="0.6.0"; sha256="0yajbbrbrkk6blb6r5y5fwvfz0j8kbc8fr91kb4f53j1afcbbhbx"; depends=[data_table]; }; @@ -16182,7 +16285,7 @@ in with self; { selectiongain = derive2 { name="selectiongain"; version="2.0.710"; sha256="0gbfzm1kzlc2lf1jfd0gxv8nlnm5bw6w7b55m48338lxb4zyhjcc"; depends=[mvtnorm]; }; selectiveInference = derive2 { name="selectiveInference"; version="1.2.5"; sha256="07kzpvdmflca1sriqfzn20f84fx2b9kwwiqm91lqjpx854bsx5kh"; depends=[adaptMCMC glmnet intervals MASS Rcpp survival]; }; selectr = derive2 { name="selectr"; version="0.4-2"; sha256="09y1n3iy297g49xlpl7xrjpwgnm57pskx5991lyfcpizbz8ax22m"; depends=[R6 stringr]; }; - selectspm = derive2 { name="selectspm"; version="0.4"; sha256="0yw5xwhv8kw3sizhq0r3wak8a32chkjil3lmxac8c6g9k47q8yrq"; depends=[ecespa spatstat spatstat_core spatstat_geom spatstat_random]; }; + selectspm = derive2 { name="selectspm"; version="0.5"; sha256="1qa2qnv6zwbxdbz78lgrmix7s1w1s91d9118nl8cdmj59k64x9q6"; depends=[ecespa spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random]; }; seleniumPipes = derive2 { name="seleniumPipes"; version="0.3.7"; sha256="1krpzh2gy3yl07c2n1d8q21xjc2qcv5ac1kv7212710bxkdyfad6"; depends=[httr jsonlite magrittr whisker xml2]; }; selfingTree = derive2 { name="selfingTree"; version="0.2"; sha256="18ylxmg2ms4ccgm4ahzfl65x614wiq5id7zazjjz5y75h8gs7gzj"; depends=[foreach]; }; sem = derive2 { name="sem"; version="3.1-15"; sha256="05hk72zxvyv6kkjhk5y6qw253c64108az7030z8j1sz8wq03n0md"; depends=[boot MASS mi]; }; @@ -16201,7 +16304,7 @@ in with self; { seminr = derive2 { name="seminr"; version="2.3.2"; sha256="1385wwh7b0fq4jqm6ragdywwafdidq4scbljzbdpvm3wis07abqv"; depends=[DiagrammeR DiagrammeRsvg glue knitr lavaan rmarkdown testthat webp]; }; semmcci = derive2 { name="semmcci"; version="1.0.3"; sha256="13p65d97j5b7nn9jrqx4bd2ih7ckrwq8nf2za7ci6lgjrlckx304"; depends=[lavaan]; }; semmcmc = derive2 { name="semmcmc"; version="0.0.6"; sha256="13asqiw3zazh9k3p39582a0bzm00gmagls2w76kvpygilj4r5391"; depends=[MASS msm]; }; - semnar = derive2 { name="semnar"; version="0.8.0"; sha256="0njd0l02lnjr59p2pj14ckfdhlg36xxjs7kqg67ap74hqv2v5pja"; depends=[jsonlite leaflet lubridate parsedate urlshorteneR]; }; + semnar = derive2 { name="semnar"; version="0.8.1"; sha256="18c509yh52sdmvm60p0kzyz86fmzi0by4gnb2jw8nppv8qlnz6zb"; depends=[jsonlite leaflet lubridate parsedate urlshorteneR]; }; semnova = derive2 { name="semnova"; version="0.1-6"; sha256="1vghf8gy0vahwn3nq752wm0rbj33jdy69yqjzin94sk8xa42d0wi"; depends=[lavaan MASS Matrix]; }; semptools = derive2 { name="semptools"; version="0.2.9.6"; sha256="18dvlms719wqnlcdd0qa81ij1a1m3bq94qxn5jf7s2gm9bmvxd5l"; depends=[dplyr lavaan rlang]; }; semsfa = derive2 { name="semsfa"; version="1.1"; sha256="1k6i1m4r9y7j85rlrsgfjm8w15ax4xgf70xyvqwsszmf9950ldxx"; depends=[doParallel foreach gamlss iterators mgcv moments np]; }; @@ -16209,9 +16312,9 @@ in with self; { semver = derive2 { name="semver"; version="0.2.0"; sha256="10wpkyms2cix3bsin2q0qhkbl445pwwpa5gm2s4jjw1989namkxy"; depends=[assertthat Rcpp]; }; semverutils = derive2 { name="semverutils"; version="0.1.0"; sha256="0y3zh8n8bgs3ag8yy9cnp0i0xrn0iqflcbrya70glyb40148w9sw"; depends=[foreach R6]; }; sen2r = derive2 { name="sen2r"; version="1.5.3"; sha256="1gmrk8i6ri2k6w519259qwaa3k0jx73hm7s93dlaxvblkv3m9hzk"; depends=[data_table doParallel foreach geojsonio httr jsonlite raster RcppTOML rgdal sf stars XML]; }; - sendgridr = derive2 { name="sendgridr"; version="0.5.1"; sha256="11lhiif6k40dxg0nj7hs4bi64yj5fq12ns8h009vnisa5fl9hq9d"; depends=[base64enc cli emayili httr jsonlite keyring magrittr usethis]; }; + sendgridr = derive2 { name="sendgridr"; version="0.6.1"; sha256="1lw17lhd3iwkp5mcbpwvwhlzgwk1nbz7xxic8fid8i22z1js22gc"; depends=[base64enc cli emayili httr jsonlite keyring magrittr usethis]; }; sendigR = derive2 { name="sendigR"; version="1.0.0"; sha256="0zc9hbxfvgb9dgmyqj5dsm2pcfykx6sk3wjcbxmpk7shyb34b6yl"; depends=[cicerone data_table DescTools dplyr DT ggplot2 haven Hmisc htmltools magrittr parsedate plotly readxl reticulate RSQLite shiny shinydashboard sjlabelled stringr xfun]; }; - sendmailR = derive2 { name="sendmailR"; version="1.2-1.1"; sha256="1dgxl6wnadlw5b3m4has5zalpk3pd5j70hfps92b9lbx4i7xbmr0"; depends=[base64enc]; }; + sendmailR = derive2 { name="sendmailR"; version="1.3-1"; sha256="1vxs9pdz1qbm7gzzigmvn5ybglakj4fska8dfj94azdvpkijs6hx"; depends=[base64enc]; }; sense = derive2 { name="sense"; version="1.0.0"; sha256="09idl88n6jlgbn5apgk0vr1bwmqi624ikv1qfx7hvyi79ixg49f4"; depends=[bbotk data_table forcats lubridate Metrics mlr3 mlr3filters mlr3learners mlr3pipelines mlr3tuning mlr3viz paradox purrr readr tictoc visNetwork]; }; sensemakr = derive2 { name="sensemakr"; version="0.1.4"; sha256="1bwc4m9fz250iyq5rl63ncgnb5f9490aas8gp51r7yljagq584va"; depends=[]; }; sensiPhy = derive2 { name="sensiPhy"; version="0.8.5"; sha256="1kjkdklva5wzmw071gbn1v9g5cf0wzmvwgy5y0dgi530v6byaw8j"; depends=[ape caper geiger ggplot2 phylolm phytools]; }; @@ -16224,27 +16327,28 @@ in with self; { sensitivitymv = derive2 { name="sensitivitymv"; version="1.4.3"; sha256="1ga8mf92niiv1z3g3kv5ha5xdd1089aaqp19dz68kv8a396vhy1j"; depends=[]; }; sensitivitymw = derive2 { name="sensitivitymw"; version="2.1"; sha256="1sjq8lxw9iy5s5a19xaxm05wnz9yg4llpbnljydini511pyshzzx"; depends=[]; }; sensmediation = derive2 { name="sensmediation"; version="0.3.0"; sha256="0pmhlc5aqz1vwl4fpn38nkqy63pbq6q62fk9xjja4khrq35zh9yb"; depends=[maxLik mvtnorm]; }; - sensobol = derive2 { name="sensobol"; version="1.1.1"; sha256="19jdjppp4hp917l6syd0964l7gvkh4p3rswznk0v17061l65kiz5"; depends=[boot data_table deSolve ggplot2 lhs magrittr matrixStats randtoolbox Rcpp RcppArmadillo Rdpack Rfast rlang scales stringr]; }; + sensobol = derive2 { name="sensobol"; version="1.1.3"; sha256="0i82zs7cxymic7b7g5q7glrbva25gd61fbhkw8qdp1incsmxxvhi"; depends=[boot data_table deSolve ggplot2 lhs magrittr matrixStats randtoolbox Rcpp RcppArmadillo Rdpack Rfast rlang scales stringr]; }; sensory = derive2 { name="sensory"; version="1.1"; sha256="1zd0ajrymxi6gygcq9fqgwgy0g6c3cqz53x0k5m0ihbmh11rc7s7"; depends=[gtools MASS Matrix]; }; senstrat = derive2 { name="senstrat"; version="1.0.3"; sha256="0j6mb55v5ivqvk8nn8fjlzrbdgj6csa58yc6gy1g07m7gk2qz2np"; depends=[BiasedUrn MASS]; }; - sentencepiece = derive2 { name="sentencepiece"; version="0.2.1"; sha256="0mwmgnkmahlik8nl14pkzi351jv9c00iylj7f5h6wkjbrizkdd34"; depends=[Rcpp]; }; + sentencepiece = derive2 { name="sentencepiece"; version="0.2.3"; sha256="1cfk450asadp3bbv1px64kf62rdhfak2drnq4y913jjjq4radxwh"; depends=[Rcpp]; }; sentiment_ai = derive2 { name="sentiment.ai"; version="0.1.1"; sha256="1wz34m5imzfwzf1ywidgb1xscsvf9nhri3w3wa2d8r7bk0nvlfjs"; depends=[data_table jsonlite reticulate roperators tensorflow tfhub xgboost]; }; sentimentr = derive2 { name="sentimentr"; version="2.9.0"; sha256="0i0lg2fl079wjv30lpqcxhx62miqakb9kzwwhrr4c18kl0bxbaav"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; }; sentometrics = derive2 { name="sentometrics"; version="1.0.0"; sha256="06qvwfgshr70n1qgf2zqjvycwwrak8d5hfyn3v5k2qzkfaxkihmm"; depends=[caret data_table foreach ggplot2 glmnet ISOweek quanteda Rcpp RcppArmadillo RcppParallel RcppRoll stringi]; }; sentopics = derive2 { name="sentopics"; version="0.7.1"; sha256="0xbs2ha6xl37169a8qmbslia8blm87x981q8rcv8p8dvbazy7vbf"; depends=[data_table quanteda Rcpp RcppArmadillo RcppHungarian RcppProgress]; }; sentryR = derive2 { name="sentryR"; version="1.1.0"; sha256="0kz81dbxg4zyns829cjhjm2g88pxzaaxdk7c8qabvl0zgqys2chy"; depends=[httr jsonlite stringr tibble uuid]; }; separationplot = derive2 { name="separationplot"; version="1.3"; sha256="0ggyr4asp86hvdp4bwdkljz9b2gzdxm2y9nbz2srlgh3m4hlz2cs"; depends=[foreign Hmisc MASS RColorBrewer]; }; + sepkoski = derive2 { name="sepkoski"; version="0.0.1"; sha256="1jx1ilbz7md501035vklk5bsw8krg8dn18pwkqynsacqy8wjwl2s"; depends=[]; }; seqCBS = derive2 { name="seqCBS"; version="1.2.1"; sha256="176ggpdcgmpsjixmz0ldknyd0vw120kjyrid3bq2bn4cgkwzb74z"; depends=[clue]; }; seqDesign = derive2 { name="seqDesign"; version="1.2"; sha256="10p8ldj83mvhpcz1yas4xns5qh8zbs533na8nv87phngi8dsb76m"; depends=[survival]; }; - seqHMM = derive2 { name="seqHMM"; version="1.2.1-1"; sha256="1gxrv0mhja0mqvm69s4mrvb31wxlk60v47a8vvhcrpa8l0b2kb4j"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; + seqHMM = derive2 { name="seqHMM"; version="1.2.3"; sha256="0pyr2a54g5709z57cw1hm33q06i3h0yhdinkxqiqf2a3jm7ih975"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; seqICP = derive2 { name="seqICP"; version="1.1"; sha256="1dfhl7g47icjw38p9c0hyvnn3pwzw7pndywk22vgcyfhiz23xjcp"; depends=[dHSIC mgcv]; }; seqest = derive2 { name="seqest"; version="1.0.1"; sha256="06zk87n26305m0hy6lg7v3bpxmsqvinwkvw3dvmzkqp5jdkhwikb"; depends=[foreach geepack MASS mvtnorm nnet Rcpp RcppArmadillo VGAM]; }; seqgendiff = derive2 { name="seqgendiff"; version="1.2.3"; sha256="0vyrs4i3q3lyqx0b1as7h2rm3s5kbapq6jxzag8dwhf0ch7yz8gv"; depends=[assertthat cate clue irlba matchingR pdist sva]; }; seqhandbook = derive2 { name="seqhandbook"; version="0.1.0"; sha256="0zncpjabazci92wzw126i491669gidkyiw7zjp7iw23m6jaf71l4"; depends=[TraMineR]; }; - seqimpute = derive2 { name="seqimpute"; version="1.7"; sha256="05bxxin46zf843fz5l1zspmq8agfp6xdy57d4ybmkzgdnf47hrw8"; depends=[Amelia cluster dfidx doRNG doSNOW dplyr foreach mice mlr nnet plyr ranger rms stringr swfscMisc TraMineR]; }; - seqinr = derive2 { name="seqinr"; version="4.2-16"; sha256="0cj07b7km5mla63qhbkxg1mnqq6vh79lsyyfpnbm29gw68w2bwy4"; depends=[ade4 segmented]; }; + seqimpute = derive2 { name="seqimpute"; version="1.8"; sha256="1vivs790zbwm8c7fwifz0nj0n9wzjmr8whz0f4pwp44gvcickxwn"; depends=[Amelia cluster dfidx doRNG doSNOW dplyr foreach mice mlr nnet plyr ranger rms stringr swfscMisc TraMineR]; }; + seqinr = derive2 { name="seqinr"; version="4.2-23"; sha256="14zv47cdrx9rpyxzccyikp0zxvcqrviw7bid0qhiixvji4bp88dg"; depends=[ade4 segmented]; }; seqmagick = derive2 { name="seqmagick"; version="0.1.5"; sha256="0h1vdsx88k3mpajfv0cgswk2s1560zm6y776b4dqrdkvkcgdbb3g"; depends=[Biostrings magrittr]; }; - seqminer = derive2 { name="seqminer"; version="8.4"; sha256="1mbx1hw9dhgry7hhan43g6aiz2lyd5api7wxq3fwajyzjrc6p1g8"; depends=[]; }; + seqminer = derive2 { name="seqminer"; version="8.5"; sha256="1ki8b4bgb3ky9y3x2g56h7i94lk345awgwkg10lys022jxhm30d7"; depends=[]; }; seqmon = derive2 { name="seqmon"; version="2.4"; sha256="1aqrg9aqvsabg5mm9jfj5vaxxaapfs1qw3yyzbx7vsspcgjdhyca"; depends=[]; }; seqtest = derive2 { name="seqtest"; version="0.1-0"; sha256="1bdfww9szh7h278id5xpfc39mxkcix3yvsdwc68wx3q3x0wxhqhq"; depends=[]; }; sequences = derive2 { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp]; }; @@ -16257,7 +16361,7 @@ in with self; { serpstatr = derive2 { name="serpstatr"; version="0.2.0"; sha256="1l7hj4npnggmg6fsk5lydg6vrad791hvmv9rhx7yb0nsa1pzi155"; depends=[httr]; }; serrsBayes = derive2 { name="serrsBayes"; version="0.5-0"; sha256="1w8fs9k4zhy0hwkm30dvi360n28cl2gn9vdqaak64g0nlvb9jy1w"; depends=[Matrix Rcpp RcppEigen truncnorm]; }; servosphereR = derive2 { name="servosphereR"; version="0.1.1"; sha256="0m1fjd3f1s2ss54xmcrm3p0c33hhi2dj0vim790g4y0mw2aicc8l"; depends=[data_table dplyr magrittr purrr rlang]; }; - servr = derive2 { name="servr"; version="0.24"; sha256="11x0857m3xzdbzr4z0vx4fcdk36arfagyf2qgamvprich0qisknr"; depends=[httpuv jsonlite mime xfun]; }; + servr = derive2 { name="servr"; version="0.25"; sha256="0g77lpyfjaibcpqb3z723z1p82msjdnc74f2n5l740z91560vbp6"; depends=[httpuv jsonlite mime xfun]; }; sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; }; sessioninfo = derive2 { name="sessioninfo"; version="1.2.2"; sha256="1jy7n37qnrb4fgzmn8s8yf7kv29yw27x8zklwf8qdb2kgj2q6qpm"; depends=[cli]; }; set = derive2 { name="set"; version="1.2"; sha256="0f36dp9k0nxp1amsd7ybwgbv0vxvgd1kns7cbfsbsh0kljxyplzp"; depends=[do]; }; @@ -16266,20 +16370,19 @@ in with self; { setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; }; settings = derive2 { name="settings"; version="0.2.7"; sha256="1i9ij5k8p2v9gxr48vas8hj337mbyx9c4ywv9bbdwkz6kzah46k5"; depends=[]; }; sever = derive2 { name="sever"; version="0.0.7"; sha256="10jckf6q31blsl1yhs5f1mx7b8sm8sqb86iakcvaslf651ijx81m"; depends=[cli htmltools shiny]; }; - sf = derive2 { name="sf"; version="1.0-8"; sha256="0cl7m47ar3iw95rpwpmjl23frdbscxa15q39mlzmwswxwy871p1x"; depends=[classInt DBI magrittr Rcpp s2 units]; }; + sf = derive2 { name="sf"; version="1.0-9"; sha256="0fq1v2ksnllyd5yx7ch8f298aqiys4v6xacswy0h4xb418dcgh45"; depends=[classInt DBI magrittr Rcpp s2 units]; }; sfaR = derive2 { name="sfaR"; version="0.1.1"; sha256="1j8ans7lhssq64crp2fwfbl6n09h7zl7y6s8zwkdmxgvydvh9n22"; depends=[dplyr emdbook fBasics Formula gsl marqLevAlg MASS maxLik moments nleqslv numDeriv primes qrng randtoolbox trustOptim ucminf]; }; sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; }; sfarrow = derive2 { name="sfarrow"; version="0.4.1"; sha256="1hslyha1w5x1ncawbwbx792cqa3031v26g9lssmb0n1hihzvfp8g"; depends=[arrow dplyr jsonlite sf]; }; sfc = derive2 { name="sfc"; version="0.1.0"; sha256="0cm4mfcfd9bhf2j5fppsihzrfipnldb6q3xradd88z9pwgrkfx2a"; depends=[dplyr sna tidyr triangle zoo]; }; sfcr = derive2 { name="sfcr"; version="0.2.1"; sha256="05ip1z6rh0k7az0y7nwp9c6rv1s53i0i698yfhx46lfnhzz87anf"; depends=[dplyr expm forcats igraph kableExtra magrittr purrr Rcpp RcppArmadillo Rdpack rlang rootSolve stringr tibble tidyr tidyselect vctrs]; }; sfdct = derive2 { name="sfdct"; version="0.1.0"; sha256="0p3ipp6x8vnsi94078n098yk9wglnawvzh19imcgk2c1l5lazwgf"; depends=[dplyr RTriangle sf sp tibble]; }; - sfdep = derive2 { name="sfdep"; version="0.2.0"; sha256="04arbp8n1vpl5kksc0893vv8qh81m2mhb8fwk55r6y7zb6wpphwk"; depends=[cli rlang sf spdep]; }; sfheaders = derive2 { name="sfheaders"; version="0.4.0"; sha256="0ig02nszrs6fkjkrkqibp23n4a8qr4i09yz7l741yjd0308ddg46"; depends=[geometries Rcpp]; }; sfhotspot = derive2 { name="sfhotspot"; version="0.7.0"; sha256="1j3588zj5z9d82ci3vrwz22gaq47lrkkl5fqqys50i46z4jazcn9"; depends=[ggplot2 rlang sf SpatialKDE spdep tibble]; }; sfinx = derive2 { name="sfinx"; version="1.7.99"; sha256="14v47y00qwvc2s0vzjw19hwn85nzj8lna539c75qq6zkn6kir6va"; depends=[]; }; sfnetworks = derive2 { name="sfnetworks"; version="0.6.1"; sha256="1klfsp49q6ysbam8f8w3x60y2zml0hmlz1rbskw8s8gc1jaicjgq"; depends=[crayon dplyr igraph lwgeom rlang sf sfheaders tibble tidygraph units]; }; sfo = derive2 { name="sfo"; version="0.1.1"; sha256="0ja0kyrr6vqwk9fj1hq9bvfkak2vgav0hlqpgn4sa9h9j1s8r4js"; depends=[]; }; - sfsmisc = derive2 { name="sfsmisc"; version="1.1-13"; sha256="0622yf4fl1b1zm988dfwdrhq7pg0rllhm8wz1pqdmp72glsi05x8"; depends=[]; }; + sfsmisc = derive2 { name="sfsmisc"; version="1.1-14"; sha256="1vxkziprndrzc5sdz36i20qdqfcyw8m87vpxm3jccf6pqbc45adw"; depends=[]; }; sft = derive2 { name="sft"; version="2.2-1"; sha256="0fxz64ba58n6ghfqsgq64n1c7qkvi8c3lsa86732mil9w71yxw33"; depends=[fda SuppDists]; }; sftime = derive2 { name="sftime"; version="0.2-0"; sha256="1ymi60ag8kqb3293bdcvb83zwsgrz000ylifjvlpzzmh1xsisanq"; depends=[sf]; }; sftrack = derive2 { name="sftrack"; version="0.5.3"; sha256="1dj21n7iqv334va40p4v3rxh87qbpwgq0062f67kpa3jd16xzkmk"; depends=[sf]; }; @@ -16299,7 +16402,7 @@ in with self; { sgolay = derive2 { name="sgolay"; version="1.0.2"; sha256="04hbgwx92k4gncdgyglv7kdxc28qhs7ap868z2rvw89hd96ai6fx"; depends=[signal]; }; sgpv = derive2 { name="sgpv"; version="1.1.0"; sha256="0w0slnnw239a34c0h7xr76c4m0rfwl0hq61g9n12vzxd6lfh3gqz"; depends=[]; }; sgr = derive2 { name="sgr"; version="1.3.1"; sha256="0m7rl3yii6zz4p21aiaifj1ram6gi6x5kywpyx9yjan79180q8h7"; depends=[MASS]; }; - sgsR = derive2 { name="sgsR"; version="1.3.1"; sha256="0n02j918xy2a7nfslrgbnza0dlm4xcg3x6j9v4cbxkd4f7a5hw2p"; depends=[BalancedSampling clhs dplyr ggplot2 SamplingBigData sf spatstat_geom terra tidyr]; }; + sgsR = derive2 { name="sgsR"; version="1.3.2"; sha256="13k2h5mxnci977yx1fav9kknrqfbq4bnw2204bcpdkrp8nf0j0rh"; depends=[BalancedSampling clhs dplyr ggplot2 SamplingBigData sf spatstat_geom terra tidyr]; }; sgstar = derive2 { name="sgstar"; version="0.1.2"; sha256="0b3bw10lf5h4kgg3c0s3lxsafaffhn8gc9kxmg7bg35lbxv0r1vn"; depends=[dplyr ggplot2 tidyr]; }; sgt = derive2 { name="sgt"; version="2.0"; sha256="0qb3maj5idwafs40fpdfrwzkadnh5yg8fvfzfs51p9yy69kbmlkx"; depends=[numDeriv optimx]; }; shades = derive2 { name="shades"; version="1.4.0"; sha256="1zg95sjhrfvbdlfc387g9p0vnb8nb6agdk1mb3wq3kwkm2da0bqj"; depends=[]; }; @@ -16309,22 +16412,24 @@ in with self; { shallot = derive2 { name="shallot"; version="0.4.10"; sha256="05ciafpahcrsh9kwg1yqwbmanvkbv1i1cjjpvq3w4cdqkhn4fam7"; depends=[commonsMath rscala]; }; shape = derive2 { name="shape"; version="1.4.6"; sha256="0yqbrrx2ywmfl99s6d1n6jblc63k1mxbiqyv8y0kq8jws1g3w45r"; depends=[]; }; shapeNA = derive2 { name="shapeNA"; version="0.0.2"; sha256="1ivp8kvnacr2fx3rs7ckzdpinb6bifzzw7riskzj95lygjlkvabw"; depends=[]; }; + shapeR = derive2 { name="shapeR"; version="1.0-1"; sha256="02al1g9ycfb63mcx4s16abniggl825ihjanx6silbpv6dn6g1ms8"; depends=[jpeg MASS pixmap plotrix vegan wavethresh]; }; shapefiles = derive2 { name="shapefiles"; version="0.7.2"; sha256="03sdcxbah05x0j6cpygx3ivkzrdlz2c0frxi30cinb05q6a41yjb"; depends=[foreign]; }; shapes = derive2 { name="shapes"; version="1.2.6"; sha256="1p9fr95zk3q2v277c5ksb0nh26mcpzwjzjb2lmag51z6hck8cb66"; depends=[MASS minpack_lm rgl scatterplot3d]; }; shapper = derive2 { name="shapper"; version="0.1.3"; sha256="1jaj9j894md45611gdrz05n0kfakawf7vlcc3zxhwdh3f7kwz4lp"; depends=[DALEX ggplot2 reticulate]; }; shapr = derive2 { name="shapr"; version="0.2.0"; sha256="1zzg58m38rkqsynczy5jwz97ph3s85aa975ffi4i5vml82zlhc4y"; depends=[condMVNorm data_table Matrix mvnfast Rcpp RcppArmadillo]; }; - shapviz = derive2 { name="shapviz"; version="0.2.2"; sha256="0avsj51fm42xd9wnp8qlprgs9f7dzh7ni33r453igw9w06ff850s"; depends=[ggbeeswarm ggfittext gggenes ggplot2 ggrepel rlang xgboost]; }; - shar = derive2 { name="shar"; version="2.0.0"; sha256="1zg7hh72inqdz39ddrnsc5ddh5qk5qwr3prb17p9jfa80apyp5px"; depends=[classInt spatstat_core spatstat_geom spatstat_random terra]; }; - sharp = derive2 { name="sharp"; version="1.2.0"; sha256="113z21rxa57q527sbfivhdfdgdd0zdbrfcb8x6jpbzrz232n0lyr"; depends=[fake glassoFast glmnet huge igraph MASS mclust Rdpack withr]; }; + shapviz = derive2 { name="shapviz"; version="0.4.0"; sha256="0pprjqm33ydm0sshgxcafwd3g0lms24ix7nha1h7pkj6d1nimh40"; depends=[ggfittext gggenes ggplot2 ggrepel rlang xgboost]; }; + shar = derive2 { name="shar"; version="2.0.2"; sha256="0xny1nxmlc4cjn3g0sk2ykwr3ijksadrnmr272d73wypakjfs6is"; depends=[classInt spatstat_explore spatstat_geom spatstat_model spatstat_random terra]; }; + sharp = derive2 { name="sharp"; version="1.2.1"; sha256="0f7zavv0pk5nm81208cgxhmamp6vbpmwinv26mxwpaf7w9j5a2sk"; depends=[beepr fake glassoFast glmnet igraph mclust Rdpack withr]; }; sharpData = derive2 { name="sharpData"; version="1.4"; sha256="1pnza52wqczjds4vp2fy9ky41y7lyj9ywam11nsr0mpv63jglnc5"; depends=[KernSmooth quadprog]; }; sharpPen = derive2 { name="sharpPen"; version="1.8"; sha256="11pvah41gi3xhb1n30k8ql28m3f47nnsd37z3mcjs0pv1lbacps2"; depends=[glmnet KernSmooth MASS Matrix np]; }; sharpeRratio = derive2 { name="sharpeRratio"; version="1.4.3"; sha256="0ndqckz7pi099yynzfwzcbz9jcz93bb9jcd2a4px2sjbagfmx7ag"; depends=[ghyp Rcpp]; }; sharpr2 = derive2 { name="sharpr2"; version="1.1.1.0"; sha256="1r7anfr296l5sbhgry6rb15hlca6mpcm24qssdzz9bckavyfvqgi"; depends=[Matrix mvtnorm]; }; - sharpshootR = derive2 { name="sharpshootR"; version="1.11"; sha256="1z1w4ci76d3yasdxhsspn7ybypcigmvzcfm5m12nfjl3441zp9zh"; depends=[ape aqp circular cluster curl digest e1071 Hmisc lattice plyr RColorBrewer reshape2 scales soilDB sp stringi vegan]; }; + sharpshootR = derive2 { name="sharpshootR"; version="1.12"; sha256="1jilrpnqmmxmz4w7508s5gb8yyggprr3pxm1xh8xq8zgdwh75i3j"; depends=[ape aqp circular cluster curl digest e1071 Hmisc lattice plyr RColorBrewer reshape2 scales soilDB sp stringi vegan]; }; sharx = derive2 { name="sharx"; version="1.0-5"; sha256="10sfjg6946jfk4051da0w1v89503av40wckqaabr12syf8kn0aw8"; depends=[dclone dcmle Formula]; }; shattering = derive2 { name="shattering"; version="1.0.7"; sha256="0dmb57pdgzwm001gfm1zm8ba7x71bp2vjk4ml0cy4r05hpdswfh3"; depends=[e1071 FNN NMF pdist pracma rmarkdown Ryacas slam]; }; shazam = derive2 { name="shazam"; version="1.1.2"; sha256="08zz5sr8vpnibpi6n3s16grcl0vhg2gw27p79h9mkqvz1d5hy7ql"; depends=[alakazam ape diptest doParallel dplyr foreach ggplot2 igraph iterators KernSmooth lazyeval MASS progress rlang scales seqinr stringi tidyr tidyselect]; }; shelltrace = derive2 { name="shelltrace"; version="3.5.1"; sha256="1xgbavaa26185i6q3907ds3bzq4xrw027x1sw5vsybqrxdz04jiz"; depends=[bmp tiff xlsx]; }; + sherlock = derive2 { name="sherlock"; version="0.5.1"; sha256="0r6abbkh84ds189lmhn3n8r7lmfa5jz47zm0niz67liymahg8i3n"; depends=[cowplot dplyr forcats ggh4x ggplot2 magrittr openxlsx plotly readr rlang scales stringr]; }; shidashi = derive2 { name="shidashi"; version="0.1.4"; sha256="1pp0vbwb3j5dvwf6n6ny7hgwb1c90vz2inrg8s92332bn5d0jlmi"; depends=[digest fastmap formatR httr jsonlite shiny yaml]; }; shiftR = derive2 { name="shiftR"; version="1.5"; sha256="18y2qzqx8hd6yph1wnsq4ygm16pcdszynh174xsrxrhvx2h9mi4x"; depends=[]; }; shinipsum = derive2 { name="shinipsum"; version="0.1.0"; sha256="0d94189hmg0bl8x0s8fpba5gcvb95sr9k9lbp3kk8482fc5h147n"; depends=[attempt DT dygraphs ggplot2 magrittr plotly]; }; @@ -16345,13 +16450,14 @@ in with self; { shinyCohortBuilder = derive2 { name="shinyCohortBuilder"; version="0.1"; sha256="0hwfaw0j7c2m071q5s9ddmn73dqvm4m443pkr20y2i83872wcvxj"; depends=[bslib cohortBuilder dplyr ggiraph ggplot2 glue highr htmltools jsonlite magrittr purrr rlang shiny shinyGizmo shinyWidgets tibble tryCatchLog]; }; shinyCyJS = derive2 { name="shinyCyJS"; version="0.0.11"; sha256="1wvrv5hdr74d2a68iwy76ffawmy4mpw0swrngw41zqpjd6hjiyxd"; depends=[htmlwidgets]; }; shinyDND = derive2 { name="shinyDND"; version="0.1.0"; sha256="0nkvz4hmjzmxlzj4vkjrdy8xlbxapg1amk180irgvwicqldi4jpm"; depends=[htmltools shiny]; }; + shinyDatetimePickers = derive2 { name="shinyDatetimePickers"; version="1.0.0"; sha256="1a19jll6dips6gca363byyf97aidbishnb3jynylgm9ys8va6rap"; depends=[htmltools lubridate reactR shiny]; }; shinyEffects = derive2 { name="shinyEffects"; version="0.2.0"; sha256="1ajar09hmrk7vcw89wkgvkz2yl0cfnkz915b57w1lmbvpxzgsq3i"; depends=[htmltools shiny]; }; shinyFeedback = derive2 { name="shinyFeedback"; version="0.4.0"; sha256="1xfznq2d4wkk0b0y4k25rwg4d3bhn3gxlkf3chfqk44f4rgril11"; depends=[fontawesome htmltools jsonlite shiny]; }; shinyFiles = derive2 { name="shinyFiles"; version="0.9.3"; sha256="11kjq0vw5c98lzrg80m9w917lkgw5im2h9wgk1b84vlaxrjy2wja"; depends=[fs htmltools jsonlite shiny tibble]; }; shinyGizmo = derive2 { name="shinyGizmo"; version="0.2"; sha256="0z4f2z6czijyjlysn2i1fx4bf8996pqv2ldabycak37hgqhb9bbc"; depends=[glue htmltools htmlwidgets magrittr purrr shiny shinyWidgets]; }; shinyGovstyle = derive2 { name="shinyGovstyle"; version="0.0.8"; sha256="1czyz51k0xm62b9bzcsygslm2nd3fnmll4wjxwimlngy00rnjnng"; depends=[htmltools jsonlite shiny shinyjs]; }; shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.2.0"; sha256="1n7c7dvvb9kqay2phcf0bkwi990x1cjl7js6pq05xx7rli5bc5h4"; depends=[dplyr heatmaply htmltools plotly readxl rmarkdown shiny xtable]; }; - shinyHugePlot = derive2 { name="shinyHugePlot"; version="0.2.0"; sha256="0bz4gf14xay7qc10x6zbgky9sviyic8r89igq25mvdnn47990ml6"; depends=[assertthat bit64 data_table dplyr htmltools jsonlite lazyeval nanotime plotly purrr R6 rlang shiny shinyjs stringr tibble tidyr tidyselect]; }; + shinyHugePlot = derive2 { name="shinyHugePlot"; version="0.2.2"; sha256="1d0rij3zi9bs5ziwfplq4k1689ibqwlr9zq3v0np2j2kkfbh63gf"; depends=[assertthat bit64 data_table dplyr htmltools jsonlite lazyeval nanotime plotly purrr R6 rlang shiny shinyjs stringr tibble tidyr tidyselect]; }; shinyIRT = derive2 { name="shinyIRT"; version="0.1"; sha256="01x7nhjs1dx2ldwznhbavc5vzqhgkn73xg395vlf2hgzbxa2ydvj"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard]; }; shinyKGode = derive2 { name="shinyKGode"; version="1.0.5"; sha256="004zwz4kqfijzvvwkq8v1gi25w1wrdlg8230g93w36gbi6cl2vk1"; depends=[ggplot2 gridExtra KGode mvtnorm pracma pspline reshape2 shiny shinyjs XML]; }; shinyKnobs = derive2 { name="shinyKnobs"; version="0.1.3"; sha256="1rxlvq4vr87krf7d6mpx0y53hyz8q1jnx6nv7mlhc1ck13q6fgac"; depends=[htmltools shiny]; }; @@ -16359,7 +16465,7 @@ in with self; { shinyML = derive2 { name="shinyML"; version="1.0.1"; sha256="086iavycv1gd6scfsixf7cmw0s5a4dc6x5cylfasxrzgiixd76c9"; depends=[argonDash argonR data_table dplyr DT dygraphs ggplot2 h2o lubridate plotly shiny shinycssloaders shinyjs shinyWidgets sparklyr tidyr]; }; shinyMatrix = derive2 { name="shinyMatrix"; version="0.6.0"; sha256="17v7gg5bli6x3w063id804859m6g07i9ksbm2jyb65489pjgpadk"; depends=[jsonlite shiny]; }; shinyMergely = derive2 { name="shinyMergely"; version="0.2.0"; sha256="1rvv5lcbb17i263xx1zn9524iwpmw56xwh0b2qii8096l20w6cnd"; depends=[shiny]; }; - shinyMobile = derive2 { name="shinyMobile"; version="0.9.1"; sha256="1v3qs6s3k7s1rnliv06ljx06cgkw154xbl0c1aiv9jjqq16rxh01"; depends=[htmltools httr jsonlite magrittr shiny]; }; + shinyMobile = derive2 { name="shinyMobile"; version="1.0.0"; sha256="0wwmcirnmdwz43900c8x93ycbrypx40xqvm2hpafmkzlljav47fb"; depends=[gplots htmltools httr jsonlite magrittr shiny]; }; shinyMolBio = derive2 { name="shinyMolBio"; version="0.2"; sha256="09lq5pvis450il1agcq5n9cilnq84rfv08w2dz1d0bbq1qgrgnvg"; depends=[checkmate dplyr plotly purrr RColorBrewer RDML shiny stringr whisker]; }; shinyMonacoEditor = derive2 { name="shinyMonacoEditor"; version="1.1.0"; sha256="12inzz9vrxi1465l82fafjva198qxyzwailx1s0fm58cqzhnqxr6"; depends=[shiny]; }; shinyNORRRM = derive2 { name="shinyNORRRM"; version="0.8.6"; sha256="1cb6n3bwqfygqc0p25z62nmrrns6hm2by4chi45sl898is5hkhdn"; depends=[pracma shiny shinythemes shinyWidgets Ternary]; }; @@ -16369,14 +16475,14 @@ in with self; { shinyRadioMatrix = derive2 { name="shinyRadioMatrix"; version="0.2.1"; sha256="195b1990r3b91f4i4azai0i4lxjgw2ngbzdywiy35c1fnmiyy882"; depends=[shiny]; }; shinySIR = derive2 { name="shinySIR"; version="0.1.2"; sha256="1g2xcm0n7chswrnw9zq3wz6mimzzf6avhkp1rcd24ga809346jcd"; depends=[deSolve dplyr ggplot2 shiny tidyr]; }; shinySearchbar = derive2 { name="shinySearchbar"; version="1.0.0"; sha256="1v80380vym31aw0i1ghwlbdi2xkf3n59w2as62ywqi79025x3w6y"; depends=[jsonlite shiny]; }; - shinySelect = derive2 { name="shinySelect"; version="1.2.0"; sha256="0m43082nl81qm7cnm4wklm6g9y4wxpjg6k5pk9ac89zgmsbffjsj"; depends=[fontawesome htmltools reactR]; }; + shinySelect = derive2 { name="shinySelect"; version="1.3.0"; sha256="16fnqhw2kd7mamhc4qnravrybbi2fbxkdmdpk07ycnasn00fprp0"; depends=[fontawesome htmltools reactR]; }; shinyShortcut = derive2 { name="shinyShortcut"; version="0.1.0"; sha256="101wz9s4rk7fbaqgm0r2v3v8za20vdxwq4vhkz8xr7y5pr65sxiq"; depends=[]; }; - shinyStorePlus = derive2 { name="shinyStorePlus"; version="0.6"; sha256="1j9ilkgr7ar4hdv2lwsvai53s9l7p2scy32qjd0y7d8irayqwrmv"; depends=[htmltools jsonlite shiny]; }; + shinyStorePlus = derive2 { name="shinyStorePlus"; version="0.8"; sha256="0brvqv63wyalkzyacn51s2n4ny5m04y4vykl03v1hrxngg7rdrgs"; depends=[htmltools jsonlite shiny]; }; shinyTempSignal = derive2 { name="shinyTempSignal"; version="0.0.3"; sha256="0lw59hy3hc6h6262bsfk1yz3zqfjfzc8f6smyq0f7yk5vkkiw359"; depends=[ape Cairo config DescTools forecast ggplot2 ggprism ggpubr ggtree golem shiny shinydashboard shinyjs stringr treeio]; }; shinyTime = derive2 { name="shinyTime"; version="1.0.3"; sha256="04vpq9fpp1iwila9l33cljig3hfyw7lsg03fqny0q260ka8chhgz"; depends=[htmltools shiny]; }; shinyToastify = derive2 { name="shinyToastify"; version="2.0.0"; sha256="0ipqwgl89pjiycwg78p0db45lbzry989kn6aqjsf79lpvghnk5qs"; depends=[fontawesome htmltools reactR shiny]; }; shinyTree = derive2 { name="shinyTree"; version="0.2.7"; sha256="0jfx2capckv7hf2yx3fn8i4rcmhi222ah91jnmhg497x8wgz31s3"; depends=[htmlwidgets jsonlite promises shiny stringr]; }; - shinyWidgets = derive2 { name="shinyWidgets"; version="0.7.4"; sha256="09cjbiv8cp4ipl2q3l4cr2vbbf1shn3mx5d80ipgklihc92lnp03"; depends=[anytime bslib htmltools jsonlite rlang sass shiny]; }; + shinyWidgets = derive2 { name="shinyWidgets"; version="0.7.5"; sha256="1ls28r6dbvi4pml1mxakn327dzl0l71pkaw5rm9n80jd5npq9vmz"; depends=[anytime bslib htmltools jsonlite rlang sass shiny]; }; shinyXYpad = derive2 { name="shinyXYpad"; version="0.2.0"; sha256="08acqbh41379p2jh0wc30m4h7rlx81cf578qc604jxnsvilvjr9n"; depends=[shiny]; }; shinyaframe = derive2 { name="shinyaframe"; version="1.0.1"; sha256="1flhgsm4q7p5acb41v73pf8ni92y9dwdppxjb9czlz1sxwf03p1s"; depends=[htmltools htmlwidgets shiny]; }; shinyalert = derive2 { name="shinyalert"; version="3.0.0"; sha256="1gws8vshnqngm55rnw22qjlqsn9d240p734dnjvsv96d22b8bsnl"; depends=[htmltools knitr shiny uuid]; }; @@ -16390,7 +16496,7 @@ in with self; { shinydashboard = derive2 { name="shinydashboard"; version="0.7.2"; sha256="0hrqkwlpb8rnmp5j74p134g4c4cl16icmwc2ip6k1634fa2y8vm5"; depends=[htmltools promises shiny]; }; shinydashboardPlus = derive2 { name="shinydashboardPlus"; version="2.0.3"; sha256="10sdb1vddx2ij867pqijr63l4233hw1vnn7mzbs0z23g77x8ra29"; depends=[fresh htmltools lifecycle shiny shinydashboard waiter]; }; shinydisconnect = derive2 { name="shinydisconnect"; version="0.1.0"; sha256="14m83y1iv7qvs1hilc0d18q46qnsciflypgm4dsj7vlvh7ilpdvm"; depends=[checkmate glue htmltools shiny]; }; - shinydlplot = derive2 { name="shinydlplot"; version="0.1.3"; sha256="1mvhx8f5800d33vl9kgs5mib003aqshb8vgfy9h4qlgxyx35zssk"; depends=[htmltools htmlwidgets plotly shiny shinyBS shinyjs]; }; + shinydlplot = derive2 { name="shinydlplot"; version="0.1.4"; sha256="1gxr98p2zyvwa6q8a80bz4h1pkgbdn58cwqbd19dbn4liszfxsy8"; depends=[htmltools htmlwidgets plotly shiny shinyBS shinyjs]; }; shinydrive = derive2 { name="shinydrive"; version="0.1.3"; sha256="16yfc9grmjzkpl6xzqn5rpkqd2qnlj4qdgia8img794l6j0y8dgp"; depends=[DT htmltools knitr R_utils shiny yaml]; }; shinyfilter = derive2 { name="shinyfilter"; version="0.1.1"; sha256="00n1l2jzzviz0f2gialj4zc6xfymzqi99raqhmlm0x9fbj1syfga"; depends=[reactable shiny shinyBS shinyjs stringr]; }; shinyfullscreen = derive2 { name="shinyfullscreen"; version="1.1.0"; sha256="0wx3jhma27701k4cmmls46rfvnix5zylxf09wdn7h6v3zdwvicq8"; depends=[jsonlite shiny]; }; @@ -16399,7 +16505,7 @@ in with self; { shinyhttr = derive2 { name="shinyhttr"; version="1.1.0"; sha256="1snrl7bg1bc5jxqs1c5a2ir6qnf1nq576aigk19k0ms4gb9hh66m"; depends=[httr shinyWidgets]; }; shinyjqui = derive2 { name="shinyjqui"; version="0.4.1"; sha256="135gwz7syyb6pbn0lkvmq0v1c6r1zivavnqhi1rnzbbzlysi27v1"; depends=[htmltools htmlwidgets jsonlite rlang shiny]; }; shinyjs = derive2 { name="shinyjs"; version="2.1.0"; sha256="1id9gsrkr28xl80a8794in17rxmmz06zqvd5hlns7mqz3fzhrhky"; depends=[digest jsonlite shiny]; }; - shinylight = derive2 { name="shinylight"; version="1.0.0"; sha256="1z03gqq57j4j3g8k41zhfbfsvfxd7rfciw1mfh87wqsz621y00xm"; depends=[httpuv jsonlite later]; }; + shinylight = derive2 { name="shinylight"; version="1.1.2"; sha256="0y2gmi8y5b595dca1sch9mzhq2mbbj7mv879md0ajc16ycfi17rp"; depends=[httpuv jsonlite later]; }; shinyloadtest = derive2 { name="shinyloadtest"; version="1.1.0"; sha256="0684p9anbc3qdn4rqkxp33nm0d04zb264b3blwa23pa5akis2klq"; depends=[curl dplyr ggplot2 httpuv jsonlite magrittr R6 rlang scales stringr svglite vroom websocket xml2]; }; shinylogs = derive2 { name="shinylogs"; version="0.2.1"; sha256="1w19z0zw2k3ni7ckg04q7j0jx4k3cm490z0qccj1smq01wn3czjj"; depends=[anytime bit64 data_table digest htmltools jsonlite nanotime shiny]; }; shinymanager = derive2 { name="shinymanager"; version="1.0.410"; sha256="0nl672dgwj34wm4i3pxk28lv6qw9xsgg3hm0h78q3zdgk8a33kdn"; depends=[billboarder DBI DT htmltools openssl R_utils R6 RSQLite scrypt shiny]; }; @@ -16425,6 +16531,7 @@ in with self; { shinyvalidate = derive2 { name="shinyvalidate"; version="0.1.2"; sha256="0mps6a1rkadbxf11lcxx4njfwbgpzyx63wndhlwb0dzyz5d02la7"; depends=[glue htmltools rlang shiny]; }; shipunov = derive2 { name="shipunov"; version="1.17"; sha256="15gakqapgi9yl9i31nqw1h6p89qphmlyn9dfhmf2ps3ki4ijq44k"; depends=[PBSmapping]; }; shock = derive2 { name="shock"; version="1.0"; sha256="11m52al591xjznl62q1waxsg5m1a1afmd0yqcc5zsjlrplykg4lp"; depends=[capushe GGMselect glasso igraph mvtnorm]; }; + shopifyadsR = derive2 { name="shopifyadsR"; version="0.1.0"; sha256="0vd8md4w4v05l9d5v7kx21kw3rkbkx8iqf4da44x95kfnnxiqjcx"; depends=[jsonlite]; }; shopifyr = derive2 { name="shopifyr"; version="1.0.0"; sha256="05hih1v5vvr7vmwarizsdx8517g74s96fdsz3klcz3g12idx1nqn"; depends=[curl jsonlite R6]; }; shortcuts = derive2 { name="shortcuts"; version="1.4.0"; sha256="0y77napfz1v3s667cmyn8357xg5lncbw1hc3hm5kra6nalhq1jps"; depends=[rstudioapi]; }; shorts = derive2 { name="shorts"; version="2.3.0"; sha256="0vhgbj4q4fgz607yzw264s0r9kmmjxyah0siw2qf4pdimjvb9l7i"; depends=[ggplot2 LambertW minpack_lm purrr tidyr]; }; @@ -16434,7 +16541,7 @@ in with self; { showtextdb = derive2 { name="showtextdb"; version="3.0"; sha256="0hlnc3fhgrdkd46n7hb6id0gg1v0bf8s4679nrr7rchyp455szq2"; depends=[sysfonts]; }; shp2graph = derive2 { name="shp2graph"; version="0-5"; sha256="1l9mg98hkb0bvr5dzd2p26g8mw5hqjxrym2gmbm10kyapvccfk56"; depends=[igraph maptools sp]; }; shrink = derive2 { name="shrink"; version="1.2.2"; sha256="0d80a0qqrsb9ybzqvg3m6a9r16ky7hqchq0hjvj8ipk430mmxdjm"; depends=[MASS mfp rms survival]; }; - shrinkDSM = derive2 { name="shrinkDSM"; version="0.1.0"; sha256="01yvs1shsp7npfm9w1caprb1x8w42zlzswc2fk9y6q340i51kfzm"; depends=[coda Rcpp RcppArmadillo RcppProgress shrinkTVP stochvol]; }; + shrinkDSM = derive2 { name="shrinkDSM"; version="0.2.0"; sha256="0vl3cl9njl0irz9hsli7xkf49jawkywww91j5gxlmz5vdrxnwz9c"; depends=[coda Rcpp RcppArmadillo RcppProgress shrinkTVP stochvol]; }; shrinkTVP = derive2 { name="shrinkTVP"; version="2.0.6"; sha256="1p9s4n3dw95ghcma71ik5zidqk54cbsd30csnbqp2w377241lxd3"; depends=[coda GIGrvg Rcpp RcppArmadillo RcppProgress stochvol zoo]; }; shroomDK = derive2 { name="shroomDK"; version="0.1.1"; sha256="1w1zhrr2jygys2slnnlmdh7py6rfs485nhdr3h9r964daggxb42q"; depends=[httr jsonlite]; }; shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; }; @@ -16453,7 +16560,7 @@ in with self; { sigInt = derive2 { name="sigInt"; version="0.2.0"; sha256="1y3qbfsynssam05q4947zqd0dkrpcnq5pla409i3xy511wv9702d"; depends=[Formula MASS maxLik pbivnorm randomForest stringr xtable]; }; sigclust = derive2 { name="sigclust"; version="1.1.0.1"; sha256="1q3jdalm7cbsl78gssl3jsifh56wyczrlx2ya4p74r4fb6sv9kga"; depends=[]; }; sigmajs = derive2 { name="sigmajs"; version="0.1.5"; sha256="1d26llpgnj687b8rwgbyhw88zakp334n4a9gabf72qwrg4awm1v5"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr scales shiny]; }; - sigminer = derive2 { name="sigminer"; version="2.1.8"; sha256="0scc56xdv1mqz7jskyd46apqpggl0bgm0xs03q65r7x3rylb3fm8"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; + sigminer = derive2 { name="sigminer"; version="2.1.9"; sha256="1pyvyn41xfvdsaij5qz70jr1b04s9kqzg8nx0ifqakdlpg82hbx9"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; sigmoid = derive2 { name="sigmoid"; version="1.4.0"; sha256="067ygikaaniikig1ypd6ry187981xar7i539917zf0avszshisxq"; depends=[]; }; signal = derive2 { name="signal"; version="0.7-7"; sha256="0qaf39vfmhn3d0bdjqd805ayfkaj48dkmf5dqd47bpk7dp21b837"; depends=[MASS]; }; signalHsmm = derive2 { name="signalHsmm"; version="1.5"; sha256="1d4v6cbvcbi8pb5zmn58s01h3jb0kv7yr7qvcnx4p2v82knvhik7"; depends=[Rcpp seqinr shiny]; }; @@ -16463,6 +16570,7 @@ in with self; { signs = derive2 { name="signs"; version="0.1.2"; sha256="0dzf5pydvs93rvj6idw9l2asv1bxwz20df7qis2db84hfww2kc6m"; depends=[rlang scales]; }; sigora = derive2 { name="sigora"; version="3.1.1"; sha256="11abbvynyhbb7y7zndbkivb13yxj8l86nrn361mfv495g1d3ba8s"; depends=[slam]; }; sigr = derive2 { name="sigr"; version="1.1.4"; sha256="1gx1dmdi8wjqlhp7a9cp915z0n5hl9xsv2hwzdmk0ijbjgipn7fh"; depends=[wrapr]; }; + siie = derive2 { name="siie"; version="0.3.0"; sha256="0xqhi8xbfccm09iwsnxva4idwk50hm4z8skyhbbj4727c71117h1"; depends=[data_table]; }; siland = derive2 { name="siland"; version="2.0.5"; sha256="1896zlfzps35mvhzbd4invpdp39cxhs13lklx56k35l4v2zvh24g"; depends=[fasterize ggforce ggplot2 lme4 raster reshape2 sf sp]; }; silicate = derive2 { name="silicate"; version="0.7.0"; sha256="1x8l6wvymx3scwzym9h6b5wgprjinzp6m2cs6r7xn9aqcr39499a"; depends=[crsmeta decido dplyr gibble gridBase magrittr purrr rlang tibble unjoin]; }; sim1000G = derive2 { name="sim1000G"; version="1.40"; sha256="1avq6xfc34izavvp9vb5ccc2b9nc4m7cwr06ygnsmpgwi5nswbb8"; depends=[hapsim MASS readr stringr]; }; @@ -16476,10 +16584,10 @@ in with self; { simITS = derive2 { name="simITS"; version="0.1.1"; sha256="0b62lvknfqli6ki4w360b1ih9nsm6pinaqskgra6vl2nzsim3sal"; depends=[dplyr rlang]; }; simMP = derive2 { name="simMP"; version="0.17.3"; sha256="1pzg79dd08ds3pfzxnk9h95gaibicv00mnm0jb4i8v5is4gzrdhr"; depends=[Biostrings BSgenome doParallel foreach GenomeInfoDb GenomicRanges IRanges XVector]; }; simMSM = derive2 { name="simMSM"; version="1.1.42"; sha256="0nxs3n64mh1sbnbmqbj7hm8d43z0cja8da9yhsygl60r1jyl98xd"; depends=[mvna survival]; }; - simMetric = derive2 { name="simMetric"; version="0.1.0"; sha256="070va0k6inhpvzvg6zakf1w92r0547c4xhlm9vx8k2rqz1snlsd4"; depends=[assertthat dplyr purrr]; }; + simMetric = derive2 { name="simMetric"; version="0.1.1"; sha256="09jpjlvmvb9z2v71n8cb14b0zfi78k609c7xvs78rghdiswqfv23"; depends=[assertthat dplyr]; }; simPATHy = derive2 { name="simPATHy"; version="0.6"; sha256="0xiqcrdnn7pcbhykkjabfym6hqq9hrnjigav8nshs143s9wflw1q"; depends=[ggm graph gRbase htmlwidgets igraph mvtnorm qpgraph R_utils shiny shinydashboard]; }; simPH = derive2 { name="simPH"; version="1.3.13"; sha256="086060f78f1dmpa6cyhx160blchckplw04gs6997f1hwzswci2l2"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv quadprog stringr survival]; }; - simPop = derive2 { name="simPop"; version="2.1.1"; sha256="0klhn5w908dl4djnddja8lfrzsk92b244vv68afp502dak7g7f95"; depends=[colorspace data_table doParallel e1071 EnvStats fitdistrplus foreach lattice MASS matrixStats nnet party ranger Rcpp RcppArmadillo vcd VIM wrswoR xgboost]; }; + simPop = derive2 { name="simPop"; version="2.1.2"; sha256="0x66i2k9s16lsjm79sjszkqa1j9nzwdnbb19lpgxbf1fcdwm5lrh"; depends=[colorspace data_table doParallel e1071 EnvStats fitdistrplus foreach lattice MASS matrixStats nnet party ranger Rcpp RcppArmadillo vcd VIM wrswoR xgboost]; }; simTargetCov = derive2 { name="simTargetCov"; version="1.0.1"; sha256="0gdqqwg9i2hga6l4s5x7wbbsm20b3sgwrci1g6hc04x1h9aawiw2"; depends=[MASS]; }; simTool = derive2 { name="simTool"; version="1.1.7"; sha256="0q093dlfj23zq3w4schn1ycff79vgzr2s3wgbz2qz4s3b7fddk70"; depends=[dplyr purrr tibble tidyr vctrs]; }; simboot = derive2 { name="simboot"; version="0.2-6"; sha256="0bgibrqb9j62p1chldi1lvdsgc6sgsr7afyq4lvyrc2h861f3j9d"; depends=[boot mvtnorm]; }; @@ -16499,7 +16607,7 @@ in with self; { simglm = derive2 { name="simglm"; version="0.8.9"; sha256="0spvr8bmdqg97y1qklr8c6svgwsdwa5haar4sbsnvpnrq5fb2baw"; depends=[broom dplyr future_apply purrr rlang]; }; simgof = derive2 { name="simgof"; version="1.0.2"; sha256="05d7im59i193f266kqy4lr37dw3v20j9niizhj9w8z1qlfqfqsrk"; depends=[ddst]; }; simhelpers = derive2 { name="simhelpers"; version="0.1.2"; sha256="0ykv03nz7133af0yc7a3j67bpqjch4jkp8szlhy68pbwgin5zm1z"; depends=[dplyr furrr magrittr Rdpack rlang rstudioapi tibble tidyr]; }; - simlandr = derive2 { name="simlandr"; version="0.2.1"; sha256="0f2jrmkx5w76hvyhsz1i9762z8xqa7mlqnph21fb65218izqwg7n"; depends=[bigmemory digest dplyr forcats gganimate ggplot2 htmlwidgets ks lifecycle magrittr MASS plotly progress purrr rlang scales tibble]; }; + simlandr = derive2 { name="simlandr"; version="0.3.0"; sha256="04nl58qayvx1pkhscqy0664dvb6jg54amf43pff81gxsvk7gs20l"; depends=[bigmemory digest dplyr forcats gganimate ggplot2 htmlwidgets ks lifecycle magrittr MASS plotly progress purrr rlang tibble]; }; simmer = derive2 { name="simmer"; version="4.4.5"; sha256="1szyz6j7jd1i6yqw627828fk0ji3s58rqjrb38gy5h54skn7w167"; depends=[BH codetools magrittr Rcpp]; }; simmer_bricks = derive2 { name="simmer.bricks"; version="0.2.1"; sha256="1s73mfmpjz91n932kjk50aai5j3p1sjibq73yxrjdhlyhiy4d8lp"; depends=[simmer]; }; simmer_plot = derive2 { name="simmer.plot"; version="0.1.17"; sha256="15bg7y21kgzvgzwzxpdwq9pay92ms2dkg9a1lpqlg5dx892rfr7n"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; @@ -16524,6 +16632,7 @@ in with self; { simplevis = derive2 { name="simplevis"; version="6.4.0"; sha256="1rf6bvdxsvp5ydvmrf2przrx851jr0yih45mbj189dykwvp377cm"; depends=[dplyr forcats ggplot2 htmlwidgets leafem leaflet leafpop lubridate magrittr plotly purrr rlang santoku scales sf shiny snakecase stars stringr tidyr tidyselect viridis]; }; simplexreg = derive2 { name="simplexreg"; version="1.3"; sha256="1zkh00xbddhgz0qn0a5pj12n0hpx4f5kihpfj71x92pmxpzglcxh"; depends=[Formula plotrix]; }; simplextree = derive2 { name="simplextree"; version="1.0.1"; sha256="18jvzcz4fdsi17j7qdqpjvx6zygvlcvpziikb8qxskaib5180l08"; depends=[magrittr Rcpp]; }; + simplifyNet = derive2 { name="simplifyNet"; version="0.0.1"; sha256="04iv1alkd85lwwyf8k6iwsj9fbxl6smsjm2b34z91za70n0rsw5q"; depends=[dplyr igraph Matrix sanic]; }; simpr = derive2 { name="simpr"; version="0.2.2"; sha256="19gc6fxjw4fxz9swf27qf2z5d2mwgcdcg2dyfyvvx3rkzn51bwia"; depends=[broom dplyr furrr generics magrittr purrr rlang tibble tidyr tidyselect]; }; simputation = derive2 { name="simputation"; version="0.2.8"; sha256="02l7j2s74mjd4vgly4nnf2w7as9m3m6qifa292r29iaw12l0zj81"; depends=[glmnet gower MASS missForest norm randomForest rpart VIM]; }; simr = derive2 { name="simr"; version="1.0.6"; sha256="1q8ip54c5pc7pjf8127jpk56nr3f8rmwqdcrr84faj4lfbr27wqb"; depends=[binom car iterators lme4 lmerTest pbkrtest plotrix plyr RLRsim stringr]; }; @@ -16563,23 +16672,24 @@ in with self; { sistec = derive2 { name="sistec"; version="0.2.0"; sha256="0y43anin9vybiivf3jrxg19i9z4smmhhjvp52gci6icpn839kr8x"; depends=[dplyr openxlsx rlang shiny stringi stringr]; }; sistmr = derive2 { name="sistmr"; version="0.1.1"; sha256="08kajkb0ypbzcyxs9wv6mdz51r7zj01k2ahskidhlqww80rd407r"; depends=[BlandAltmanLeh dplyr ggbeeswarm ggplot2 ggrepel rlang scales]; }; sitar = derive2 { name="sitar"; version="1.3.0"; sha256="0lhwbbpq6anqrk3818xw3nrl63bj3vwgsmxad0dpl8y50rkcc4cs"; depends=[dplyr forcats ggplot2 glue magrittr nlme purrr rlang rsample tibble tidyr]; }; + sitepickR = derive2 { name="sitepickR"; version="0.0.1"; sha256="1cqvf4d2jpav53v7h7vzknm8cbr5kqk1djqkhmjrwv2zjnx3fg97"; depends=[data_table dplyr ggplot2 magrittr MatchIt reshape2 sampling scales stringr tidyr tidyselect]; }; siteymlgen = derive2 { name="siteymlgen"; version="1.0.0"; sha256="1176fnf39ars5cdjvy5w2k6b92qv51hy86s71sl8ghr0lwdq9f59"; depends=[data_table dplyr lubridate magrittr purrr rlist rmarkdown stringr yaml ymlthis]; }; sitmo = derive2 { name="sitmo"; version="2.0.2"; sha256="1hm89zi38ldgbskyx1cn7gm87yqy7zrxli8q05a36y1ndvazi3j4"; depends=[Rcpp]; }; sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; sitree = derive2 { name="sitree"; version="0.1-13"; sha256="0v0qbzdgh1lcg7m6b5vzfwy74hvj1b61c49lq8c4az740sf34sx6"; depends=[data_table ggplot2]; }; sitreeE = derive2 { name="sitreeE"; version="0.0-8"; sha256="0jwxca8y0nn1aqx4c6gikgf31nb4dll543m0akd4jmqx6fc450kd"; depends=[data_table sitree]; }; - sits = derive2 { name="sits"; version="1.1.0"; sha256="0nmkw2yhqgzp882mmk8dlic7i6g0bf0bc5n4zp8rl280gm1bm581"; depends=[data_table dplyr gdalUtilities ggplot2 lubridate magrittr purrr Rcpp RcppArmadillo rstac sf slider terra tibble tidyr torch yaml]; }; + sits = derive2 { name="sits"; version="1.2.0"; sha256="056wlrd5hfmmc6lslg6f7hwiwpl8xm2gagkf26fvsk1y0wfgs0ss"; depends=[data_table dplyr gdalUtilities lubridate magrittr purrr Rcpp RcppArmadillo rstac sf slider terra tibble tidyr torch yaml]; }; sivs = derive2 { name="sivs"; version="0.2.5"; sha256="16w1yixb2wfgprnfm408l11nz9j28by7sz82x17rzmjb6p3n1jw5"; depends=[doParallel foreach glmnet pROC varhandle]; }; sizeMat = derive2 { name="sizeMat"; version="1.1.2"; sha256="1vbndadsn80ddrg471vp1qxf0gan38w6dkjk1p2npvfb47wdjj2h"; depends=[MASS matrixStats MCMCpack]; }; - sjPlot = derive2 { name="sjPlot"; version="2.8.11"; sha256="05iimcf1if1cx9bmsjb6f5gcq58hjiw10vx7kqd4nqnyhzcvy8yr"; depends=[bayestestR datawizard dplyr effectsize ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; + sjPlot = derive2 { name="sjPlot"; version="2.8.12"; sha256="0g6r4p1r70jjzw74177kxcx2br2n206jwlqazw0vxcsbffb8a411"; depends=[bayestestR datawizard dplyr effectsize ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; sjSDM = derive2 { name="sjSDM"; version="1.0.3"; sha256="0jj0rah158sjqrcnji5qc5kghf8m74frky7mqpagcxd15fh5bvz3"; depends=[abind checkmate cli crayon ggplot2 ggtern mathjaxr Metrics mgcv mvtnorm reticulate rstudioapi Ternary]; }; sjdbc = derive2 { name="sjdbc"; version="1.6.1"; sha256="0cz5qc5lsipd3nlkzj8j03xmpzxp52c3q5av8pr7fm3vsdclawfk"; depends=[rJava]; }; sjlabelled = derive2 { name="sjlabelled"; version="1.2.0"; sha256="1va86q5wddyvqgdpy8d0an2c7v1qbb4hpn0ai6y1v5v1ff87w73k"; depends=[datawizard insight]; }; sjmisc = derive2 { name="sjmisc"; version="2.8.9"; sha256="1gzkq95ckxr0vhrzggflzli9hs7zr8c0yym9zn1wf74yrr0mgc3q"; depends=[dplyr insight magrittr purrr rlang sjlabelled tidyselect]; }; - sjstats = derive2 { name="sjstats"; version="0.18.1"; sha256="1cv80yjnyh6qihxf57zivihhia20gibr5f03x8aspy6382wnwlka"; depends=[bayestestR broom dplyr effectsize emmeans insight lme4 magrittr MASS modelr parameters performance purrr rlang sjlabelled sjmisc tidyr]; }; + sjstats = derive2 { name="sjstats"; version="0.18.2"; sha256="0a1y6bqyvgs0avzasr8g6vwcxcnj4d9g0rfz2qiznwadpjzqw66h"; depends=[bayestestR broom datawizard dplyr effectsize emmeans insight lme4 magrittr MASS modelr parameters performance purrr rlang sjlabelled sjmisc tidyr]; }; sjtable2df = derive2 { name="sjtable2df"; version="0.0.2"; sha256="10h24yaikm8l3kkkj6yv430ybmgz0ydvxlv3smyyv5ww0c9qzmp1"; depends=[data_table kableExtra magrittr rlang rvest xml2]; }; skater = derive2 { name="skater"; version="0.1.1"; sha256="0cylcwxqc75a7fkyn7llwp0c7k35sfsbylxrjn0cpdnxbyf5xcx5"; depends=[corrr dplyr kinship2 magrittr purrr readr rlang tibble tidyr]; }; - skedastic = derive2 { name="skedastic"; version="1.0.4"; sha256="07i9sgqc96h9ih8r1n9fvryyw8znpap1bpmvbm62sm3qcj7m856p"; depends=[arrangements bazar boot broom CompQuadForm cubature data_table expm gmp MASS mvtnorm pracma quantreg Rdpack Rmpfr]; }; + skedastic = derive2 { name="skedastic"; version="2.0.1"; sha256="0faj5lv6axpg8ra5pa49j9ha41cmxynhf6fc7dn5ym2g0f497k9l"; depends=[bazar broom caret CompQuadForm inflection MASS Matrix mgcv osqp pracma quadprog quadprogXT Rdpack Rfast ROI ROI_plugin_qpoases slam]; }; skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; }; skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; sketch = derive2 { name="sketch"; version="1.1.19"; sha256="0dq5llbjnvpgzwwp14fqddmmrw6lsis23g21lx4glwmh23j4m1qp"; depends=[base64enc glue htmltools jsonlite magrittr purrr rlang rstudioapi shiny V8]; }; @@ -16597,6 +16707,7 @@ in with self; { skmeans = derive2 { name="skmeans"; version="0.2-14"; sha256="1kkp9zdwk1k3q50xp8g0jqgg3x1qzgigfkg37bpac7542276vsqq"; depends=[clue cluster slam]; }; sknifedatar = derive2 { name="sknifedatar"; version="0.1.2"; sha256="0zi9anrxg9zkgxlzlfyry5i5zlj3fs8580mp6xckkl096dry9ih0"; depends=[cli dplyr knitr magrittr modeltime parsnip purrr rlang rsample tibble tidyr tune]; }; skpr = derive2 { name="skpr"; version="1.1.6"; sha256="1fbdg44jrrjfm49c0k8s6xi556q2fzy2pmbfma1vmggnx6d917wi"; depends=[car doParallel doRNG foreach future gt iterators lazyeval lme4 lmerTest magrittr progress promises Rcpp RcppEigen rintrojs scales shiny shinyjs shinythemes survival viridis]; }; + skylight = derive2 { name="skylight"; version="1.1"; sha256="06snpj5jdr5wzv87587izvkxnxn24xl11jm7l2x2sj6s6rw16p9w"; depends=[]; }; skynet = derive2 { name="skynet"; version="1.4.3"; sha256="08a5p3rk0qhsxawdxj5sfw07rdk56x6viy37w1b0hxqaxxxv239i"; depends=[data_table dplyr geosphere ggplot2 ggrepel httr igraph leaflet maps RCurl stringr]; }; skyscapeR = derive2 { name="skyscapeR"; version="1.0.0"; sha256="1x3s003wdmnf0h1k3gl6cvd35g516y7v2yzahr3wxk2np832kjli"; depends=[doParallel foreach httr MESS numDeriv oce plotrix png RColorBrewer rootSolve swephR zoo]; }; slackr = derive2 { name="slackr"; version="3.2.0"; sha256="10klljhkycnyqkzq73gj71c2phdqx9l3lb2jzancc59x21wjqn3b"; depends=[cachem dplyr ggplot2 httr jsonlite magrittr memoise rlang tibble withr]; }; @@ -16611,9 +16722,9 @@ in with self; { sleev = derive2 { name="sleev"; version="1.0.2"; sha256="13ws39qy8h5g3fjsj056g7cnxgb7z97i2isagfyw9rykf4jkaqsv"; depends=[Rcpp RcppArmadillo RcppEigen]; }; slendr = derive2 { name="slendr"; version="0.4.0"; sha256="05r01fylzaz23akc874cfpzlfszdicsfssb2nrhn5pci753bschh"; depends=[ape dplyr gganimate ggplot2 ijtiff magrittr png purrr readr reticulate rnaturalearth sf shiny shinyWidgets stars tidyr]; }; slfm = derive2 { name="slfm"; version="1.0.1"; sha256="0s7fdvr4fvsb4789f9ly2x820g4xvabl04wk7k6i8pd5ckj2xjhy"; depends=[coda lattice Rcpp RcppArmadillo]; }; - slgf = derive2 { name="slgf"; version="0.1.0"; sha256="0wjj9mbf33x5isi5h3mdas283aw9x2hi5hyqgqbi941vhwf6v31l"; depends=[numDeriv Rdpack]; }; + slgf = derive2 { name="slgf"; version="2.0.0"; sha256="07gkl35hq3w42kw103gn9f15s0z4n49nq39ip1nzm3s6d1ad6in6"; depends=[numDeriv Rdpack]; }; slickR = derive2 { name="slickR"; version="0.5.0"; sha256="1zxj6ivdhi9wvqcrl0p8clwk8nxqmg1bijqamp0lhq82dpyrdngp"; depends=[base64enc htmltools htmlwidgets lifecycle xml2]; }; - slider = derive2 { name="slider"; version="0.2.2"; sha256="1vxk2bc33svwcki2j8zr5jcxswh27i0fqgzjw2a5a1pp9dh3fmd3"; depends=[ellipsis glue rlang vctrs warp]; }; + slider = derive2 { name="slider"; version="0.3.0"; sha256="18gw0bxpbb00qcafmyv2avyj83s710hrj10x998ch9qbbyx1fsmw"; depends=[cli rlang vctrs warp]; }; slideview = derive2 { name="slideview"; version="0.2.0"; sha256="031ahdqswl14sw0nxmhaam37g14cifb83dyp2zjz1mh6qpkzl2gs"; depends=[htmltools htmlwidgets lattice raster viridisLite]; }; slim = derive2 { name="slim"; version="0.1.1"; sha256="0x9bk6w6lmw15s85gw9g8d1wlb57kkvnmx1wsyasn93x9llkjva1"; depends=[data_table MASS]; }; slimrec = derive2 { name="slimrec"; version="0.1.0"; sha256="1qzcvk7z8y11hwmybvppk1gf8di596zxy7qs22fclp6h6y18s377"; depends=[assertthat bigmemory glmnet Matrix pbapply]; }; @@ -16628,7 +16739,7 @@ in with self; { sm = derive2 { name="sm"; version="2.2-5.7.1"; sha256="0mql7rlm8wkdwmx1lv7pscdk9ibvsdpfdv8bpaz1hv2gn4pc637a"; depends=[]; }; smaa = derive2 { name="smaa"; version="0.3-1"; sha256="13qf495glfz6r75kfdplr1x6fqmys961pzbgv96lw62lby5d2qgp"; depends=[]; }; smacof = derive2 { name="smacof"; version="2.1-5"; sha256="1i9a3637m943sw6s0hx2b99kny0sv8niywqi9l12pjxx9flnj0zv"; depends=[candisc colorspace doParallel e1071 ellipse foreach Hmisc MASS nnls plotrix polynom weights wordcloud]; }; - smacpod = derive2 { name="smacpod"; version="2.4.1"; sha256="08khvvmskgdcdkyil6bvk47z347690407wfb4fpczwxhzkjx14f2"; depends=[abind pbapply plotrix smerc sp spatstat_core spatstat_geom spatstat_random]; }; + smacpod = derive2 { name="smacpod"; version="2.5"; sha256="0br9ahix3q2qv06aj8jr2828ysj0waik6za42ahd9b8hv7chrhad"; depends=[abind pbapply plotrix smerc sp spatstat_explore spatstat_geom spatstat_random]; }; smallarea = derive2 { name="smallarea"; version="0.1"; sha256="0jcv0xbh8v4g6zxxs4yyd0divwzk9d2w7g01r4s65khxvy3av7yx"; depends=[MASS]; }; smallstuff = derive2 { name="smallstuff"; version="1.0.1"; sha256="0zqwxmazk4nb8sgwwkymaap3l9pfzw3mqbmfzvj0wn7wzjsx10cx"; depends=[class data_table igraph matlib Matrix pryr ROCR]; }; smam = derive2 { name="smam"; version="0.6.0"; sha256="1vgsx1n9gkkjnv5lrrznpfqvh019qcjki6gy625k3ykqg5zg229v"; depends=[doParallel doSNOW EnvStats foreach Matrix nloptr numDeriv Rcpp RcppGSL RcppParallel]; }; @@ -16639,7 +16750,7 @@ in with self; { smartsnp = derive2 { name="smartsnp"; version="1.1.0"; sha256="1gzzhys6bja55iclkji254kri6r3iamiw7bv881mp615wi9r3hx2"; depends=[bootSVD data_table foreach Rcpp RcppArmadillo Rfast RSpectra vegan vroom]; }; smatr = derive2 { name="smatr"; version="3.4-8"; sha256="0qqqbg65flxh48sw7x90zvgzbpcfzb1811h0pz3zlhdw9a7khs9n"; depends=[]; }; smbinning = derive2 { name="smbinning"; version="0.9"; sha256="1sr0nsqqzxdf402g9qx1ycigbh330idl9n2cyli4x4zxj1nqm3yv"; depends=[Formula gsubfn partykit sqldf]; }; - smcfcs = derive2 { name="smcfcs"; version="1.7.0"; sha256="10barbr4869ispdg8as6j8gfcc683dxv249vqlpk0p1cv3mvy6nj"; depends=[abind brglm2 checkmate MASS rlang survival VGAM]; }; + smcfcs = derive2 { name="smcfcs"; version="1.7.1"; sha256="1i57rgibm5fqdw8gk61f79mvz60ygzgbfsb2nyckfxiamy25nfq2"; depends=[abind brglm2 checkmate MASS rlang survival VGAM]; }; smcure = derive2 { name="smcure"; version="2.1"; sha256="0377dj6wvny2y44phsf7177ivn70a55v316skwf02n03ghqx73k9"; depends=[survival]; }; smd = derive2 { name="smd"; version="0.6.6"; sha256="1nvlka2prqh1hcj4ngpj2c2gmfryziijqwjyfy9fmq78skiq0jij"; depends=[MASS]; }; smdata = derive2 { name="smdata"; version="1.2"; sha256="1p26b46kg4hmhs2fl9h9vchar00llqv58ylx438bjgzz4f229qvr"; depends=[]; }; @@ -16650,7 +16761,7 @@ in with self; { smidm = derive2 { name="smidm"; version="1.0"; sha256="1a26y70mb5qzl1zjaicvnb8i7z3r94qqzda2cpac776h1w35zy51"; depends=[dplyr extraDistr]; }; smile = derive2 { name="smile"; version="1.0.4.1"; sha256="0781rzkqwpqnl22phxdcf533p55pshfp4v01k8d1bhd5yvr13y7k"; depends=[Matrix mvtnorm numDeriv Rcpp RcppArmadillo sf]; }; smirnov = derive2 { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; - smlmkalman = derive2 { name="smlmkalman"; version="0.1.0"; sha256="1kxy2nfiz5d33cp2baxfxxqb64jfrkjyp6rhiablqw448y6xlszp"; depends=[pracma scales spdep truncnorm]; }; + smlmkalman = derive2 { name="smlmkalman"; version="0.1.1"; sha256="1ns717rq0vipplh3l2ypinrscv3bjv86j68aw53ygs6g59h0v2vp"; depends=[pracma scales spdep truncnorm]; }; smmR = derive2 { name="smmR"; version="1.0.3"; sha256="0b6w2k5j65jdngc871ch9ragr7qgwbkl4nhk3gqnbpvkr9m4x88f"; depends=[DiscreteWeibull Rcpp RcppArmadillo seqinr]; }; smnet = derive2 { name="smnet"; version="2.1.2"; sha256="17zv02f1g86s55g81anhqrxfgy2biamsw606byxwh9kdc5l4vfv6"; depends=[RSQLite spam SSN]; }; smog = derive2 { name="smog"; version="2.1.0"; sha256="1mnnvp6crjwwiym16q4hmn9zwna1gblwqjlan4x9zyvgp1j70k26"; depends=[doParallel dplyr foreach ggplot2 magrittr Rcpp RcppArmadillo Rdpack rmarkdown tidyr]; }; @@ -16677,7 +16788,7 @@ in with self; { smurf = derive2 { name="smurf"; version="1.1.3"; sha256="0n99dzsb17r0a6d8nkijfg6rdvvc2g4pard2dnmyjq0p69j3f3gb"; depends=[catdata glmnet MASS Matrix mgcv RColorBrewer Rcpp RcppArmadillo speedglm]; }; smvgraph = derive2 { name="smvgraph"; version="0.1.2"; sha256="06pvnrhd3q913nxhk1icj11xkd1is3qi31b0kv6zbc0qkixn1ym7"; depends=[DescTools fmsb MASS shiny shinydashboard sortable]; }; sn = derive2 { name="sn"; version="2.1.0"; sha256="12s4g9rfrnijdil7bqw66ikj5k3w6bdnz6fsgqsp0bkfsap9nps9"; depends=[mnormt numDeriv quantreg]; }; - snSMART = derive2 { name="snSMART"; version="0.2.1"; sha256="0vm1lrdlk64s49wi3dnfhm0l46swd0ssq6c16fh0qvzb59rc584m"; depends=[bayestestR condMVNorm cubature EnvStats geepack HDInterval pracma rjags tidyr truncdist]; }; + snSMART = derive2 { name="snSMART"; version="0.2.2"; sha256="1s4g379x34gw9mvfp2jm8wsnjp0z29639w6s5vhxa4nnxax3j41y"; depends=[bayestestR condMVNorm cubature EnvStats geepack HDInterval pracma rjags tidyr truncdist]; }; sna = derive2 { name="sna"; version="2.7"; sha256="0ka319s1w857fj28ja1i1ljgv2h6ji4d69riqy9pwhvvghsa83s4"; depends=[network statnet_common]; }; snahelper = derive2 { name="snahelper"; version="1.4.1"; sha256="1krmaynhvbbdvyy55h2b1h9w9pw1gjkd2ha4prhcm836rmvyb6av"; depends=[colourpicker DT formatR ggplot2 ggraph graphlayouts igraph miniUI rstudioapi shiny]; }; snakecase = derive2 { name="snakecase"; version="0.11.0"; sha256="1ky1x2cp5rd0ffd9m1fji9sq4z4jsrpxzg30brw8bb4ihfjj114r"; depends=[stringi stringr]; }; @@ -16694,11 +16805,10 @@ in with self; { snowboot = derive2 { name="snowboot"; version="1.0.2"; sha256="0jj3p0g4rwml8vmlwj10rfisxfjlipcrpvq5z134z4j35jp6ggv3"; depends=[igraph Rcpp Rdpack]; }; snowfall = derive2 { name="snowfall"; version="1.84-6.2"; sha256="0frmasv04wd47h04zbwaryhiyxllarf3ggpa39p5qicjp6r7lilv"; depends=[snow]; }; snowflakes = derive2 { name="snowflakes"; version="1.0.0"; sha256="0adna9jfs0wv4dhyjczxhq7c0ldjfai07p1q9119avxyilv9x0vi"; depends=[]; }; - snpEnrichment = derive2 { name="snpEnrichment"; version="1.7.0"; sha256="1lja1n26nr8lgbca2kraryv933jwa2w3h41appzylflf0w3liz9y"; depends=[ggplot2 snpStats]; }; snpReady = derive2 { name="snpReady"; version="0.9.6"; sha256="1r96j8zh84dn7qh3zgl0p0v3a80hx2wd3c4jgjlr43hzl7yglpqr"; depends=[impute Matrix matrixcalc rgl stringr]; }; snplist = derive2 { name="snplist"; version="0.18.2"; sha256="1sa2s3br4agx920jpr250iih61p99v500nh0c1w99w0846g9908c"; depends=[biomaRt DBI R_utils Rcpp RSQLite]; }; snpsettest = derive2 { name="snpsettest"; version="0.1.1"; sha256="0vfm09bff7l7z36lzwp0ndnlb230f0kg6dlbjlpk028xd1iy4if1"; depends=[data_table gaston Rcpp RcppArmadillo]; }; - sns = derive2 { name="sns"; version="1.1.2"; sha256="132zd57xb2y0nshw4lakf49r2mvvkv7j32f7l7hqrh91mw7wyqpr"; depends=[coda mvtnorm numDeriv]; }; + sns = derive2 { name="sns"; version="1.2.2"; sha256="1zb0s89lp2049i7l919dpd7bd396y9s6v8913qz56fvsq95sbvcn"; depends=[coda mvtnorm numDeriv]; }; sobolnp = derive2 { name="sobolnp"; version="0.1.0"; sha256="00rmigjyd3fsmhrhbvjzrfsl4ir0xpfr4xbgjws6vkx2rmcqnq1s"; depends=[minqa np pbmcapply]; }; soc_ca = derive2 { name="soc.ca"; version="0.8.0"; sha256="16l0synym91b7djgzdcz43dnvw44fkyxky9gm37ixbxzq1czdp9w"; depends=[dplyr ellipse FactoMineR flextable forcats ggplot2 ggrepel gridExtra htmlTable magrittr Matrix purrr RColorBrewer reshape2 rlang shiny stringr tibble tidyr]; }; socceR = derive2 { name="socceR"; version="0.1.1"; sha256="1vd0r3vixavg1br2q3kfn3nvl7dw854vkcfwcvyw411k84ivb13y"; depends=[Rcpp]; }; @@ -16714,8 +16824,8 @@ in with self; { sofa = derive2 { name="sofa"; version="0.4.0"; sha256="1w78f8pnx4vh6znpwwcy9k4j795zji4bv88mi6ihdv09ar7if7yv"; depends=[crul jsonlite mime R6]; }; softImpute = derive2 { name="softImpute"; version="1.4-1"; sha256="1v2a4d688ij5zcvkzpra9yx40xckdfnllnfnyq2450zf3n1kjk7a"; depends=[Matrix]; }; softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; - soilDB = derive2 { name="soilDB"; version="2.7.5"; sha256="0giijrfqgqyiq14bfwckizhplqyigz2vca91z56c8mrgj8ly4fxa"; depends=[aqp curl data_table DBI]; }; - soilassessment = derive2 { name="soilassessment"; version="0.2.4"; sha256="0sm20rg1c61163q44kayarkczphwjb16cs2vri46v0ybi8pnvm50"; depends=[arm caret Cubist deSolve e1071 FuzzyAHP googledrive Hmisc kernlab nnet png qrnn quantregForest randomForest ranger raster rpart soiltexture sp]; }; + soilDB = derive2 { name="soilDB"; version="2.7.6"; sha256="1fw7wk9py5ifxrq2p08i9fdh5zass00b8gl6bw4lrpzpqdkzpfpk"; depends=[aqp curl data_table DBI]; }; + soilassessment = derive2 { name="soilassessment"; version="0.2.5"; sha256="1wpls6ipdripdd1fmfn3yil30ghcb1h6mrpax376gv48ndgf9q73"; depends=[arm caret Cubist deSolve e1071 FuzzyAHP googledrive Hmisc kernlab nnet png qrnn quantregForest randomForest ranger raster rpart soiltexture sp]; }; soilhypfit = derive2 { name="soilhypfit"; version="0.1-7"; sha256="1ssz9w9ibw8mban0fq50j4lgr8vmkrsn8v9cpkg0wl28z1hqbhz3"; depends=[mgcv nloptr quadprog Rmpfr snowfall SoilHyP]; }; soilphysics = derive2 { name="soilphysics"; version="5.0"; sha256="1ijnqlb52c3vm6ydiginp0f82vkip0kbsvbd9yac3scrc5g1b5z3"; depends=[boot fields MASS rhandsontable shiny shinydashboard]; }; soiltestcorr = derive2 { name="soiltestcorr"; version="2.1.2"; sha256="1yw3y655i9d7y18vcqyhh3yg3mc41bqb2ix9lbylzd83zp7g71c4"; depends=[AICcmodavg data_table dplyr ggplot2 ggpp minpack_lm modelr nlstools purrr rlang tidyr]; }; @@ -16752,31 +16862,31 @@ in with self; { soundClass = derive2 { name="soundClass"; version="0.0.9.2"; sha256="0z697asv2kzs93b45ndbkxfdzq3fmi1f6aprvpxps4x354gg2pi6"; depends=[DBI dbplyr dplyr generics htmltools keras magrittr RSQLite seewave shiny shinyBS shinyFiles shinyjs signal tuneR zoo]; }; soundcorrs = derive2 { name="soundcorrs"; version="0.4.0"; sha256="1azvsv3bghlab8q24wbb6xwd5a4cydx1cagvhk8h0h5ib9957zab"; depends=[]; }; soundecology = derive2 { name="soundecology"; version="1.3.3"; sha256="16h6gbdlyav7wbfisdv1f2zsqhr45liidgj7qqk8giwjxgan8q97"; depends=[ineq oce pracma seewave tuneR vegan]; }; - soundgen = derive2 { name="soundgen"; version="2.5.2"; sha256="1jbcn6rvch8w6myrmlbp19vlvpk9hnnqg06c2idlmxn52z5ga60g"; depends=[doParallel dtw foreach mvtnorm phonTools seewave shiny shinyBS shinyjs signal tuneR zoo]; }; + soundgen = derive2 { name="soundgen"; version="2.5.3"; sha256="0mbf9c640gqx7amc94z0dc0b8lky1b6db4w60lsk0lad11f5zl9m"; depends=[doParallel dtw foreach mvtnorm phonTools seewave shiny shinyBS shinyjs signal tuneR zoo]; }; sourcetools = derive2 { name="sourcetools"; version="0.1.7"; sha256="1jnjir0q2dj724f1mjm6p5h77yzyx6xcqy9r2g7gmcxkxw349627"; depends=[]; }; sovereign = derive2 { name="sovereign"; version="1.2.1"; sha256="1v5cchwia8v9h4fpb506v6nikp5k042axmryjmqrgimaly8dk9nv"; depends=[broom dplyr furrr future ggplot2 gridExtra lmtest lubridate magrittr mclust purrr randomForest sandwich stringr strucchange tidyr xts zoo]; }; - sp = derive2 { name="sp"; version="1.5-0"; sha256="077q1wh9ihhcn1338xspnd90hy16ljxsav1xcrxdxj4fyynhd6lk"; depends=[lattice]; }; + sp = derive2 { name="sp"; version="1.5-1"; sha256="1pr9yb2wqapyizdfpi7zqd4a5b40q58czbfj6svvp2fkh6sfmfb9"; depends=[lattice]; }; sp23design = derive2 { name="sp23design"; version="0.9-1"; sha256="1ivsds210rpxj52labc9mf2ncm3vji983w0kj757jl1b308ql30s"; depends=[mvtnorm survival]; }; spAddins = derive2 { name="spAddins"; version="0.2.0"; sha256="19wbcghcf0f9qvqy92jhsdcpmd9b4lkhxndvr71cyhzga539lh1n"; depends=[magrittr purrr rstudioapi stringr]; }; spBFA = derive2 { name="spBFA"; version="1.2"; sha256="00m1pww9a377fpharpqw3m30qx13l5xays6638h2jblrz8w71i8q"; depends=[msm mvtnorm pgdraw Rcpp RcppArmadillo]; }; spBayes = derive2 { name="spBayes"; version="0.4-6"; sha256="0530fhb832nr1vzhwml696cbvwpphjha35i20q0aixxqg8fd35jw"; depends=[coda Formula magic Matrix sp]; }; spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.6"; sha256="1i5b0k1h2fq44n1hpb4cs5j2rz0s1x94d36yglvd24i55mjjzfk4"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; spCP = derive2 { name="spCP"; version="1.3"; sha256="0rphd8zawr2r14dzwv77plk5xw020pkc26ir72qiqc1acin42xd1"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; - spData = derive2 { name="spData"; version="2.2.0"; sha256="07whxr039cxvk2nn65jada3i8vqqw34lgca9j17ah8chy9r0m73f"; depends=[sp]; }; + spData = derive2 { name="spData"; version="2.2.1"; sha256="1ddkk8c4dblv5p2rqvqx8b89k8pazvvq48rlw661vf2iwwvm8d2m"; depends=[sp]; }; spDates = derive2 { name="spDates"; version="1.1"; sha256="0k6383hgrs4751qnwx03s85a9a0ldpxm7xanrnmg13plc2713kvm"; depends=[data_table dplyr ggplot2 gstat magrittr raster rcarbon rlang smatr sp viridisLite]; }; - spFSR = derive2 { name="spFSR"; version="2.0.1"; sha256="0sqsa6spk9mz784abxazs9i3gv046za2la55xslrpn3b7d8wksl5"; depends=[future ggplot2 lgr mlr3 mlr3learners mlr3pipelines tictoc]; }; + spFSR = derive2 { name="spFSR"; version="2.0.3"; sha256="177yx24fgkdx8b82sd49cjp8dwghy85qbhns2a26ag05c1hcnwzp"; depends=[future ggplot2 lgr mlr3 mlr3learners mlr3pipelines ranger tictoc]; }; spFW = derive2 { name="spFW"; version="0.1.0"; sha256="1d00a01mnwc7lcnqgz2dfglhwqwhh9vm4yd904zq3s26zv4qapyf"; depends=[Rcpp RcppArmadillo]; }; spGARCH = derive2 { name="spGARCH"; version="0.2.2"; sha256="1wrmk2ybgysvibfy8vvp7pyqda5apqp0jxjfp3hlb416fza52966"; depends=[Matrix nleqslv Rcpp RcppEigen Rsolnp spdep truncnorm]; }; spMC = derive2 { name="spMC"; version="0.3.12"; sha256="1ybjpm6737yr0pyqhk4fz4288r5mgkmknzfcw8ffc680b8qnxknr"; depends=[]; }; spMaps = derive2 { name="spMaps"; version="0.4.0"; sha256="0n9693aam7gsclfhijq7cy61l0w4mm5vf3rjaz5w0jrz77lrkprh"; depends=[raster rgeos sp]; }; spNNGP = derive2 { name="spNNGP"; version="1.0.0"; sha256="0z09hxmm2pbxsbm3zqk839z2gb3g2n2hqkahcbvcgywrqn3v8cal"; depends=[coda Formula RANN]; }; - spNetwork = derive2 { name="spNetwork"; version="0.4.3.2"; sha256="1srf7s22izqhh09ri0vsnb39mc8isjxcbik71iwxilykds6bh34x"; depends=[abind BH cubature data_table dbscan dplyr future_apply ggplot2 igraph progressr Rcpp RcppArmadillo RcppProgress Rdpack sf spdep]; }; - spOccupancy = derive2 { name="spOccupancy"; version="0.4.0"; sha256="1k6qn5js38pvs8xzjqj7s3zyf3s3lrmqp666wi6wih79lpr5qaj4"; depends=[abind coda doParallel foreach lme4 RANN]; }; + spNetwork = derive2 { name="spNetwork"; version="0.4.3.6"; sha256="055h6xxs9kpl1yzcl5ha4pbgbzvp15vqr43xhbdic58flfgc13mr"; depends=[abind BH cubature data_table dbscan dplyr future_apply ggplot2 igraph progressr Rcpp RcppArmadillo RcppProgress Rdpack sf spdep]; }; + spOccupancy = derive2 { name="spOccupancy"; version="0.5.1"; sha256="0c4mm0qczr1pc0k6nb3ms2i1lsrm6qfjwyv2szdd6ci66ac01kc6"; depends=[abind coda doParallel foreach lme4 RANN]; }; spRingsteen = derive2 { name="spRingsteen"; version="0.1.0"; sha256="13mdbsbq51sp34xp04lgc4klwb3chnnkvh5r99qfapbbr0vra8vl"; depends=[devtools rlang]; }; - spTDyn = derive2 { name="spTDyn"; version="2.0.1"; sha256="1wprn2adw4l5pkwkfzdpcr07jxgycx9kaf8w8mfv27nka5hacgqx"; depends=[coda sp spacetime spTimer]; }; + spTDyn = derive2 { name="spTDyn"; version="2.0.2"; sha256="010x3rjncasly1scngwyiys7asmk4ay51bzhk0zfjazwfkmqd12r"; depends=[coda sp spacetime spTimer]; }; spThin = derive2 { name="spThin"; version="0.2.0"; sha256="0j10j1cbbwp3baqm3b59rxlnd643mkx1mirlxpnr1ad2g7xpm69f"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="3.3.2"; sha256="0dlsyj0mawpgxr1yn4ldqm3xh148c79lk55fq475zjzyiwz9ynfc"; depends=[coda extraDistr sp spacetime]; }; - spaMM = derive2 { name="spaMM"; version="4.0.0"; sha256="1cdba0g6brkl4gmlvb4n1bnh23xlbljk1f911f7wirvy0lzxvghm"; depends=[boot crayon geometry gmp MASS Matrix minqa nlme nloptr numDeriv pbapply proxy Rcpp RcppEigen ROI]; }; + spaMM = derive2 { name="spaMM"; version="4.1.20"; sha256="112jw1y95s704k230vnpa8lmzcallzvgrx4xkypdg0w8pp8ap7l3"; depends=[boot crayon geometry gmp MASS Matrix minqa nlme nloptr numDeriv pbapply proxy Rcpp RcppEigen ROI]; }; spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; spaceNet = derive2 { name="spaceNet"; version="1.2"; sha256="1s2672icxs0qvdhl52xhllgvh1i9mjfrn5j3icyw6h61ljbnhy11"; depends=[MASS mclust permute RcppTN Rfast sna vegan]; }; spacefillr = derive2 { name="spacefillr"; version="0.3.2"; sha256="0raaw9ib8b2dzkh4w28wpxcgxs7ky328yaayb64lc39syf7g19dv"; depends=[Rcpp]; }; @@ -16790,22 +16900,22 @@ in with self; { spam64 = derive2 { name="spam64"; version="2.9-0"; sha256="1k2ah76l38xwzn7c541b7nip2yx8n8yh6p9j80rpkc3jdni2n9dq"; depends=[]; }; spamtree = derive2 { name="spamtree"; version="0.2.2"; sha256="1z1dyv6cvcdilqyfpzgl3zr0jmzjn2sznrvypvxx7c8i6qfq8nd0"; depends=[dplyr FNN magrittr Rcpp RcppArmadillo rlang tibble]; }; spanish = derive2 { name="spanish"; version="0.4.2"; sha256="15drc11lh0qxpww50p0smi8qxfbln82bx0yd74jqf71irhk5jxyp"; depends=[magrittr xml2]; }; - spant = derive2 { name="spant"; version="2.3.0"; sha256="1zp2wdqsc5plxwnzy8jidzmi18gvcwq87xnwzbxg60q794y09fql"; depends=[abind expm fields irlba jsonlite minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; + spant = derive2 { name="spant"; version="2.5.0"; sha256="1f7xiy4c0b43qj8jf0a2s5fzp9l4qhnc5ysk8dq75hj7pabbhjbg"; depends=[abind expm fields irlba jsonlite minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; }; spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.4"; sha256="1s1hd6hvjxnfb3w10v93pggijmm2h4rcsf7ckl34j2sw9bvv7zka"; depends=[sparklyr]; }; sparkavro = derive2 { name="sparkavro"; version="0.3.0"; sha256="0g6ac9msfbx8f8j8rj0hvlxjsn317zyam207q7i8kf0hshs1r58f"; depends=[DBI dplyr sparklyr]; }; sparkbq = derive2 { name="sparkbq"; version="0.1.1"; sha256="0gccm8q5a45k9zm8f90r7fhcmriq8d038p022k7cikbr6rqsrmyh"; depends=[sparklyr]; }; sparkhail = derive2 { name="sparkhail"; version="0.1.1"; sha256="1a9p9i7fs6l9rx5ha6akjjl7qhfak01xsjg28ysv0imikmwp6hy7"; depends=[dplyr sparklyr sparklyr_nested]; }; sparkline = derive2 { name="sparkline"; version="2.0"; sha256="0lrr1lm7603di7x3mf53cp13d9ssjh9gmb43wa6z9yqapis2djm2"; depends=[htmltools htmlwidgets]; }; - sparklyr = derive2 { name="sparklyr"; version="1.7.8"; sha256="13a4cl0ybmx53azp4fvgrmdk25c6k6dradfick1sighsqrav3q7i"; depends=[assertthat base64enc config DBI dbplyr digest dplyr ellipsis forge generics globals glue httr jsonlite openssl purrr r2d3 rappdirs rlang rprojroot rstudioapi tibble tidyr tidyselect uuid vctrs withr xml2]; }; + sparklyr = derive2 { name="sparklyr"; version="1.7.9"; sha256="0l495jxhdbj4wjc0chp3j32gd3sab9sd9pcm3977zsjyfhcp5i3g"; depends=[assertthat base64enc config DBI dbplyr digest dplyr ellipsis forge generics globals glue httr jsonlite openssl purrr r2d3 rappdirs rlang rprojroot rstudioapi tibble tidyr tidyselect uuid vctrs withr xml2]; }; sparklyr_flint = derive2 { name="sparklyr.flint"; version="0.2.2"; sha256="0sszblvgxi8l8wlic5nrnm4pc9m0byyvayrja2476vnz0pqliv69"; depends=[dbplyr dplyr rlang sparklyr]; }; sparklyr_nested = derive2 { name="sparklyr.nested"; version="0.0.3"; sha256="0lva7fbjp253kxq3970h52cr8s52xycbi03d5shsyna8grhkbczj"; depends=[dplyr jsonlite listviewer purrr rlang sparklyr]; }; sparktex = derive2 { name="sparktex"; version="0.1"; sha256="0r6jnn9fj166pdhnjbsaqmfmnkq0qr1cjprihlnln9jad05mrkjx"; depends=[]; }; sparktf = derive2 { name="sparktf"; version="0.1.0"; sha256="0jd018n7553q0ldv6whxbj2s38myig0m8zq4fbp8fsv34q5wnsx4"; depends=[sparklyr]; }; sparkwarc = derive2 { name="sparkwarc"; version="0.1.6"; sha256="0nzw6lgjrgqd1hj46jd52s8s3vdb7q2nc500jlgd0ydrr12zd123"; depends=[DBI Rcpp sparklyr]; }; sparkxgb = derive2 { name="sparkxgb"; version="0.1.1"; sha256="1h7jk76v9wfm8qzqy6lhsmsp767wydwba9xyqszndl88295iac1j"; depends=[forge sparklyr]; }; - sparr = derive2 { name="sparr"; version="2.2-16"; sha256="0qhlkx7byx3245yzsk30zr4lgndjx5g1vr0s4azmcya245pp6rkw"; depends=[doParallel foreach misc3d spatstat spatstat_core spatstat_geom spatstat_random spatstat_utils]; }; - sparrpowR = derive2 { name="sparrpowR"; version="0.2.5"; sha256="187571srw0yhvqdgfpa374zmlaxhjmj9xlnh9gm2v4j46pfvrs5n"; depends=[doFuture doRNG fields foreach future iterators lifecycle raster sp sparr spatstat_geom spatstat_random]; }; + sparr = derive2 { name="sparr"; version="2.2-17"; sha256="0cdqhwx6qm9ngfc2lcafjqmrvqqi3kfrjl66n4dv65fpvprixmv3"; depends=[doParallel foreach misc3d spatstat spatstat_explore spatstat_geom spatstat_random spatstat_utils]; }; + sparrpowR = derive2 { name="sparrpowR"; version="0.2.6"; sha256="0hvayhf66m1ckqnhjr6b8szin76qifpysiiwnfnnff8ig3yphv7q"; depends=[doFuture doRNG fields foreach future iterators lifecycle raster sp sparr spatstat_geom spatstat_random]; }; sparseBC = derive2 { name="sparseBC"; version="1.2"; sha256="0a1siyi9kc805qji4alnw3c21spf4iw4wpsbfl50zvs52p8vl8w2"; depends=[fields glasso]; }; sparseEigen = derive2 { name="sparseEigen"; version="0.1.0"; sha256="0vqcy61rarmp3liz8fr3vs3y40hkb3wfw89b5xsj1byaiap4772s"; depends=[]; }; sparseFLMM = derive2 { name="sparseFLMM"; version="0.4.1"; sha256="174lnhqig7m6fjfsj114ld059z9mjih3jzm5cq8iscxnhr9m11lr"; depends=[data_table MASS Matrix mgcv refund]; }; @@ -16817,11 +16927,11 @@ in with self; { sparseLTSEigen = derive2 { name="sparseLTSEigen"; version="0.2.0.1"; sha256="08xhpm9hp9x9rmiys4fvh9y4z2xsdkzckzw3lq0vlzvjcaynvidq"; depends=[Rcpp RcppEigen robustHD]; }; sparseMVN = derive2 { name="sparseMVN"; version="0.2.2"; sha256="1vd97w4mrc6s9d95a43cpz90adhn2015as93j55hm5phpgj24v75"; depends=[Matrix]; }; sparseMatEst = derive2 { name="sparseMatEst"; version="1.0.0"; sha256="06y061zl6id7cfw3cqzvwykzlijmala8hj61i04mgc491ngybimv"; depends=[glasso]; }; - sparseR = derive2 { name="sparseR"; version="0.2.0"; sha256="0agvynyv89msghwvc2ap98pdsmg2bvwa6kwc74fmmgpnzlxcjysf"; depends=[dplyr magrittr ncvreg recipes rlang]; }; + sparseR = derive2 { name="sparseR"; version="0.2.1"; sha256="0b9k96p66j2vn9yvcjw652lh9l6j5dbswhqhq0i4ps06jm5ks5av"; depends=[dplyr magrittr ncvreg recipes rlang]; }; sparseSVM = derive2 { name="sparseSVM"; version="1.1-6"; sha256="0b0qiikjyyh9qfd4jl69zqnlp7adxq63mwsxvgwvyc0pv5ccg8i0"; depends=[]; }; sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.8"; sha256="1x1phd33r3ci72sbm0pkmigwbi4x59pdz8n5919119mkxdf740vs"; depends=[Matrix nnet]; }; sparsediscrim = derive2 { name="sparsediscrim"; version="0.3.0"; sha256="1fzvki3az1y5bz6d7lygv3hjbzn17gq8g2s7xqmldlpq1v4dhjar"; depends=[bdsmatrix corpcor dplyr ggplot2 mvtnorm rlang]; }; - sparsegl = derive2 { name="sparsegl"; version="0.5.0"; sha256="0s30gh65w1vvl13qgxwy907cyqzkv4rcdzs1zik4hfnl323g5lmq"; depends=[assertthat dotCall64 ggplot2 magrittr Matrix rlang RSpectra tidyr]; }; + sparsegl = derive2 { name="sparsegl"; version="1.0.0"; sha256="1khf6r7fzddq2vxqvj70vsvjmk7ksivjz1vipwxnc6a3fr4lbg73"; depends=[cli dotCall64 ggplot2 magrittr Matrix rlang RSpectra tidyr]; }; sparseinv = derive2 { name="sparseinv"; version="0.1.3"; sha256="06inzix9m7b5g7c97lyvyl2g7fdr4iz60791hl2w9mah7nd6bfja"; depends=[Matrix Rcpp spam]; }; sparsenet = derive2 { name="sparsenet"; version="1.4"; sha256="1r7xmpn3r8dq1zm6ghygks3l014kqlrpfgsl8q23w7rly8ksw3m9"; depends=[Matrix shape]; }; sparsepca = derive2 { name="sparsepca"; version="0.1.2"; sha256="0wk2nm37p15gb8i4s45izzzdmwywr56kv4g0j3jd5s3slm224vv4"; depends=[rsvd]; }; @@ -16835,15 +16945,15 @@ in with self; { sparta = derive2 { name="sparta"; version="0.8.4"; sha256="109i8yhv8snhpccrhxy1k8xcy9jj8m3li2d7vaylvxbrlnc26d89"; depends=[Rcpp RcppArmadillo]; }; spass = derive2 { name="spass"; version="1.3"; sha256="1c148z0i3d185hnf54xmgppjrblv3b2s3sm0lmj78gvav04mj5s4"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; spatPomp = derive2 { name="spatPomp"; version="0.30.0.1"; sha256="1aswvp49vl62pfr6gxb7ji2bqzkv3bv8mi9iyz4xl6sz0rj2xwzv"; depends=[abind dplyr foreach ggplot2 magrittr pomp rlang stringr tidyr]; }; - spate = derive2 { name="spate"; version="1.7.3"; sha256="084iwp1wjrq06f3849iakzkik3gxms9lrq1l07kqyaz53di3dxjx"; depends=[mvtnorm truncnorm]; }; + spate = derive2 { name="spate"; version="1.7.4"; sha256="0fc09y54g1h9pmc0rfwbrlzsck27kxhsynzwyxydysmda133spdf"; depends=[mvtnorm truncnorm]; }; spatgeom = derive2 { name="spatgeom"; version="0.1.0"; sha256="1rvvnniryq9bb04v3i010p92v59zv3n47q1pn3bl9h92lgxlh18y"; depends=[cowplot dplyr ggplot2 lwgeom purrr scales sf]; }; spatgraphs = derive2 { name="spatgraphs"; version="3.2-2"; sha256="09bbcqgmbg6a65mnxivr4pghsanj22x1j0l4hq8bzpwgbas7byhy"; depends=[Matrix Rcpp]; }; spathial = derive2 { name="spathial"; version="0.1.2"; sha256="1vwzcwpmx8kwv821vjf940qd5am3k0shf1s14jva71mgxs70ddmb"; depends=[class igraph irlba knitr MASS matrixStats pracma rmarkdown Rtsne]; }; spatial = derive2 { name="spatial"; version="7.3-15"; sha256="1vwc7ingskdj1k4nq418x9yl3cw699pckb9xh5a1yp3g9plknqg5"; depends=[]; }; spatialCovariance = derive2 { name="spatialCovariance"; version="0.6-9"; sha256="1m86s9a059spp97y37dcirrgjshcqzpdj11cq92vji624w4nrhlb"; depends=[]; }; - spatialEco = derive2 { name="spatialEco"; version="1.3-7"; sha256="0yhv4amqwbmcx6anzyrsmlrk25ishdlwyigyw9snd9d2v5k88s1q"; depends=[MASS raster rgeos sf sp spatstat_core spatstat_geom spdep]; }; + spatialEco = derive2 { name="spatialEco"; version="2.0-0"; sha256="1xjk2697mcih1swjplxb5fv9winlj362lffd5hd5sipcfpl888ws"; depends=[cluster EnvStats ks MASS mgcv RANN RCurl readr rms sf SpatialPack spatstat_explore spatstat_geom spdep terra yaImpute]; }; spatialRF = derive2 { name="spatialRF"; version="1.1.4"; sha256="1lbwk7ziv292kxkz6rpr44jij3q13ljmqaccq56x6c2l8wkxl583"; depends=[doParallel dplyr foreach ggplot2 huxtable magrittr patchwork ranger rlang tibble tidyr tidyselect viridis]; }; - spatialTIME = derive2 { name="spatialTIME"; version="1.2.1"; sha256="1raw6svphhwagyx6bkxbi83gvszkkb5pl5c76vhgsxp48hlzc5q2"; depends=[crayon dplyr furrr future ggplot2 gridExtra magrittr pheatmap plyr purrr RColorBrewer rlang scales spatstat_core spatstat_geom tidyr tidyselect viridis]; }; + spatialTIME = derive2 { name="spatialTIME"; version="1.2.2"; sha256="16mbmqycp70lgixp2ai9al2821v0vxvnc713nch5g4azrwzsaizi"; depends=[crayon dplyr furrr future ggplot2 gridExtra magrittr pheatmap plyr purrr RColorBrewer rlang scales spatstat_explore spatstat_geom tidyr tidyselect]; }; spatialfusion = derive2 { name="spatialfusion"; version="0.6-6"; sha256="14qccp9ca7b7v9w4fj04a99mx6qchfs8588fl16qfdmfbazwnfra"; depends=[deldir fields Rcpp rgeos rstan sp spam]; }; spatialprobit = derive2 { name="spatialprobit"; version="1.0"; sha256="1g65c081xmhfp45lidn57xwryk4pmzzixs3b2qzixzg4knks74dy"; depends=[Matrix mvtnorm spatialreg spdep tmvtnorm]; }; spatialreg = derive2 { name="spatialreg"; version="1.2-6"; sha256="07flzdw6pjhmx9skrjp9y05x9fayxk5ymcr50f1zxd8slcbl2f4v"; depends=[boot coda expm LearnBayes MASS Matrix nlme sf spData spdep]; }; @@ -16852,18 +16962,19 @@ in with self; { spatialwarnings = derive2 { name="spatialwarnings"; version="3.0.3"; sha256="03a0gb8v6028v6q5w3iap8fn9nkb2rpnabqgzmr2dyxnpfgr9dn3"; depends=[future future_apply ggplot2 gsl plyr Rcpp RcppArmadillo segmented]; }; spatialwidget = derive2 { name="spatialwidget"; version="0.2.3"; sha256="0j0v0cyqndlg9p7g03gp1br9b2i3p50abzpw67k3cawm96a87crj"; depends=[BH colourvalues geojsonsf geometries jsonify rapidjsonr Rcpp sfheaders]; }; spatsoc = derive2 { name="spatsoc"; version="0.1.16"; sha256="1pyw6606kwskgcfnzvgzvy8n4i9s3mmn1789d1lhk04h14r33fns"; depends=[adehabitatHR data_table igraph rgeos sp]; }; - spatstat = derive2 { name="spatstat"; version="2.3-4"; sha256="1nlrp7660y68axlm4pczc5rxbdhbbac1ylh69azr4swj1gbzi82f"; depends=[spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_utils]; }; - spatstat_Knet = derive2 { name="spatstat.Knet"; version="2.0-1"; sha256="1mxynbk5sclf94fbrf6vicc48hwmdpxhyxylcmpmlqji4nhs97vx"; depends=[Matrix spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_sparse spatstat_utils]; }; - spatstat_core = derive2 { name="spatstat.core"; version="2.4-4"; sha256="0fyi8y1z919nzn47kaviln7gflhcp5qdi3gfvf7nwkdix3pkk373"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; + spatstat = derive2 { name="spatstat"; version="3.0-2"; sha256="1k8qs5hsy0n4rh7ccp6bdnqgbw3fvjdp55bc0zhjqwbbhq8c0ax0"; depends=[spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils]; }; + spatstat_Knet = derive2 { name="spatstat.Knet"; version="3.0-2"; sha256="1yvdasrxmsa2m9016kclb33kv5893fsz5rcr416yhpf6jixdsfh8"; depends=[Matrix spatstat spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_sparse spatstat_utils]; }; spatstat_data = derive2 { name="spatstat.data"; version="3.0-0"; sha256="0mvh33sk2sfhfk276j088adzldrg8p6pd5avl2j21428i250byfg"; depends=[Matrix spatstat_utils]; }; + spatstat_explore = derive2 { name="spatstat.explore"; version="3.0-5"; sha256="0qn8dmymbnh9vdw0hysijkk2nwz5q69i62smpp8f3wy3z898lhwz"; depends=[abind goftest Matrix nlme spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils]; }; spatstat_geom = derive2 { name="spatstat.geom"; version="3.0-3"; sha256="111wj507i2mxi0ak8sj468w26pr2f7hgv3ssmbf0qjkp1v35cnvf"; depends=[deldir polyclip spatstat_data spatstat_utils]; }; - spatstat_gui = derive2 { name="spatstat.gui"; version="2.0-1"; sha256="1snvy4q0w4yn24n2yxyqvdi70i70zpqa7q13cm38d9135hm35cgk"; depends=[rpanel spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_utils]; }; - spatstat_linnet = derive2 { name="spatstat.linnet"; version="2.3-2"; sha256="0y1py6x0xbw4ad3pjwcspi4ysgfh61f5fd79787zzgyyh2va8y4w"; depends=[Matrix spatstat_core spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils]; }; - spatstat_local = derive2 { name="spatstat.local"; version="4.1-5"; sha256="0iq2xppfxp9aa3878z3l4q13qqzn3hg5v7cfv8z8m1mzmnw1r1y8"; depends=[spatstat spatstat_core spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; - spatstat_random = derive2 { name="spatstat.random"; version="2.2-0"; sha256="0kb01s8k67ydcfqcnz3i55vpiksihh4xsg0w2p2bclxxkpdvpw25"; depends=[spatstat_data spatstat_geom spatstat_utils]; }; + spatstat_gui = derive2 { name="spatstat.gui"; version="3.0-1"; sha256="1y6z3gdad0nhqg494b5pjq4h0mr3mcrhnnc0chy56lf8chb6p5jb"; depends=[rpanel spatstat spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils]; }; + spatstat_linnet = derive2 { name="spatstat.linnet"; version="3.0-3"; sha256="1y9crkj9sa1hnfsfkyyq8zv6fgafv07b8w0y01qps1rd6virnns0"; depends=[Matrix spatstat_data spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_sparse spatstat_utils]; }; + spatstat_local = derive2 { name="spatstat.local"; version="5.0-1"; sha256="02ip6d2mr07n3lv4i5xdmb1j55syk5hwjwr7j81ibxkp3gj8gm61"; depends=[spatstat spatstat_data spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_sparse spatstat_utils tensor]; }; + spatstat_model = derive2 { name="spatstat.model"; version="3.0-2"; sha256="0a6lf5y0k13h60s0lnwwfrmxswl7avcg4fhqmha1nmycidhga8z9"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_explore spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; + spatstat_random = derive2 { name="spatstat.random"; version="3.0-1"; sha256="1dp58dxw7ln9bsls9ssbb917qakvgr9nf2jci6zq31rv0rf8934k"; depends=[spatstat_data spatstat_geom spatstat_utils]; }; spatstat_sparse = derive2 { name="spatstat.sparse"; version="3.0-0"; sha256="1lhsa1gjahz6sp1yrlch0d01rnayyw8hip382vghyxljfly0mglr"; depends=[abind Matrix spatstat_utils tensor]; }; spatstat_utils = derive2 { name="spatstat.utils"; version="3.0-1"; sha256="06mrw3nc2pqz4897i7wqy04mdfnn6drggv8mr92r3zb4cn0cg8fb"; depends=[]; }; - spatsurv = derive2 { name="spatsurv"; version="1.8"; sha256="1ybm4gs4q9zg0frva4hs5raqmbr6p8i9nr2zxi5vrxn8nq7iczmf"; depends=[fields iterators lubridate Matrix raster RColorBrewer rgeos sp spatstat spatstat_core spatstat_geom spatstat_random stringr survival]; }; + spatsurv = derive2 { name="spatsurv"; version="1.8-2"; sha256="0v6l1vxcvy6bdg6inszcz4rryb99v9ixxcmh4a3381s4md9h6z4v"; depends=[fields iterators lubridate Matrix raster RColorBrewer rgeos sp spatstat_explore spatstat_geom spatstat_random stringr survival]; }; spbabel = derive2 { name="spbabel"; version="0.5.5"; sha256="0yfkz28nfvl3rm0bxljb3y19zhnx7pabxy81d835pbfmjq5vvp51"; depends=[dplyr rlang sp tibble]; }; spc = derive2 { name="spc"; version="0.6.7"; sha256="02dw1hh3ksx119wf7qkg01m7h60pmsc3vkryw5fikyxyfz871ldl"; depends=[]; }; spc4sts = derive2 { name="spc4sts"; version="0.6.3"; sha256="0lvsixjgdfgnr7y7kk2227bcs8sqy2mrpw50dwwgdjvm5q0sr7l7"; depends=[gridExtra rpart]; }; @@ -16873,6 +16984,7 @@ in with self; { spcr = derive2 { name="spcr"; version="2.1.1"; sha256="09clpz0vqssagmfjcrs2qp5i61ppjr9nxn342l6gbdnbw91wc7f3"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; spdep = derive2 { name="spdep"; version="1.2-7"; sha256="1slykkgvn7blj59lbzj0g0r0dqlcbp0gwnw43sihlbdz4m45kb4x"; depends=[boot deldir e1071 s2 sf sp spData units]; }; + spdl = derive2 { name="spdl"; version="0.0.2"; sha256="18iw1sx2cig2qw85d0vwa8s531pxvqkv9v9fyx0n1afq80pa93d7"; depends=[RcppSpdlog]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; spdplyr = derive2 { name="spdplyr"; version="0.4.0"; sha256="0lijp78wgrky103137vfk3k4s051qppd6jq6s065k9i7y1azbpc1"; depends=[dplyr rlang sp spbabel tibble]; }; spduration = derive2 { name="spduration"; version="0.17.1"; sha256="1hsz4hcw85f1rj2pd8ppzsd1r8fh4yf6axc11yf2hd287ghzzxzy"; depends=[corpcor forecast MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; @@ -16889,7 +17001,6 @@ in with self; { spectator = derive2 { name="spectator"; version="0.1.1"; sha256="0c3rk4nh3fdk49mazsbzqdq0wa0pznib567b0h915hv5i8kdsl5q"; depends=[geojsonsf httr sf]; }; spectr = derive2 { name="spectr"; version="1.0.1"; sha256="1jbadg9n42qrbw1v6hqrdp5pzy2nn1kvqi4xscxdxvc6c33i7zr4"; depends=[data_table foreach lomb]; }; spectral = derive2 { name="spectral"; version="2.0"; sha256="116gn41nvlw7jmr6qx9pl8hckg2pzgzx49kql52j5xqf39sgyx9p"; depends=[lattice pbapply rasterImage RhpcBLASctl]; }; - spectralAnalysis = derive2 { name="spectralAnalysis"; version="3.12.0"; sha256="0mz01hx86qi65k6vzz9k1j9q7gi10dh14cqvrlfy93f3kmi52q0x"; depends=[baseline BiocGenerics data_table ggplot2 hNMF jsonlite magrittr NMF nnls plotly plyr RColorBrewer signal viridis]; }; spectralGP = derive2 { name="spectralGP"; version="1.3.3"; sha256="1jf09nsil4r90vdj7n1k6ma9dzzx3bwv0fa7svil9pxrd2zlbkbs"; depends=[]; }; spectralGraphTopology = derive2 { name="spectralGraphTopology"; version="0.2.3"; sha256="09nsszm2f6q8kz84kn7ihhb627q186jwpvr6fm633l8app4ilf2x"; depends=[MASS Matrix progress Rcpp RcppArmadillo RcppEigen rlist]; }; spectralR = derive2 { name="spectralR"; version="0.1.2"; sha256="0vjx0m7cibv0dk7p5la77caf66bj8k7djhw6i1nibghk7qf00lbk"; depends=[dplyr geojsonio ggplot2 reshape2 rgee rlang sf tibble tidyr]; }; @@ -16929,7 +17040,7 @@ in with self; { spinyReg = derive2 { name="spinyReg"; version="0.1-0"; sha256="0kbg7rncrrl5xdsaw9vj909x97mfp77mjnvghczplmnwmmanyn72"; depends=[]; }; spiralize = derive2 { name="spiralize"; version="1.0.6"; sha256="10zz0f3z033pqi9rm3kgac85i5h8ngg2cx4dlr8z5y8v08dpln6b"; depends=[circlize GetoptLong GlobalOptions lubridate]; }; spiritR = derive2 { name="spiritR"; version="0.1.1"; sha256="1fjr63rl9hwqxzgm4lkb9v74cxxpi4lrlcgjixdm7zgccm8ihdvh"; depends=[httr magrittr xml2]; }; - spiro = derive2 { name="spiro"; version="0.1.1"; sha256="0pr3ivlqsn8pjpb0vphffcf37xwm3c712rq19fq8b2j7xlbfkgnc"; depends=[cowplot digest ggplot2 knitr readxl signal xml2]; }; + spiro = derive2 { name="spiro"; version="0.1.2"; sha256="026l0hq7jxm9hnmwmjkyvs7601yz9ljcz45pily6jb2gjcg4z8w7"; depends=[cowplot digest ggplot2 knitr readxl signal xml2]; }; splancs = derive2 { name="splancs"; version="2.01-43"; sha256="0j641xipb3nzncxwgf1adrcc95jqinhx68fr55mcixk93xg5cldk"; depends=[sp]; }; splash = derive2 { name="splash"; version="1.0.2"; sha256="1iviwf7dxlrbfzjigl8wd8q3i0jkdnb7mr8zy6zg0w81p4416q42"; depends=[]; }; spldv = derive2 { name="spldv"; version="0.1.1"; sha256="0v721z8v0dhnkcbljw592hhlgg32a6sh9hz4lx9p2jpkx8mpz9bb"; depends=[car Formula MASS Matrix maxLik memisc numDeriv spatialreg sphet]; }; @@ -16952,7 +17063,7 @@ in with self; { splutil = derive2 { name="splutil"; version="2022.6.20"; sha256="02hic08ckjg7iyjcyjncrkvjnpbpxk0v8g1yxy2s1vaw0mmfj4cz"; depends=[data_table ggplot2 magrittr]; }; spm = derive2 { name="spm"; version="1.2.2"; sha256="0slpy3cmv5l2gbgvy3yfdhzm73427bl39shadpmf3jkkbflcczsn"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; spm2 = derive2 { name="spm2"; version="1.1.2"; sha256="1cf5j5gi4h8v5sjlbj279h5la8nscn3n3p3prmci9258593xgkjq"; depends=[e1071 fields gbm glmnet gstat MASS nlme psy randomForest ranger sp spm]; }; - spmodel = derive2 { name="spmodel"; version="0.1.1"; sha256="00d84xzhmqljz3gxrxp3bg9fk2rn1wiyks6rr3mmcmjqds6c80ln"; depends=[generics Matrix sf tibble]; }; + spmodel = derive2 { name="spmodel"; version="0.2.0"; sha256="16cawihxf9kn4q4jrv3qqmddkin323wcsrl3zl7js65q4dqkk6ka"; depends=[generics Matrix sf tibble]; }; spmoran = derive2 { name="spmoran"; version="0.2.2.6"; sha256="0d97saji49k69fgkg0zk5pdrmy81kvij96nv1v5y8axf8in2znhb"; depends=[doParallel fields FNN foreach ggplot2 Matrix rARPACK RColorBrewer sp spdep vegan]; }; spnaf = derive2 { name="spnaf"; version="0.2.1"; sha256="1v19rhcy8na5iz0mqkadgmqyzq9maqnzb4s7l6blq6zz3krgaj0s"; depends=[dplyr magrittr rlang sf spdep tidyr]; }; spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; }; @@ -16964,14 +17075,12 @@ in with self; { spooky = derive2 { name="spooky"; version="1.4.0"; sha256="18qlm1dvspw2n7xanrxvflgvdppva3pxrs6m56cia2klv95rn1xn"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments philentropy purrr readr scales tictoc]; }; spork = derive2 { name="spork"; version="0.2.2"; sha256="09n159nkrgpwf6ck24axgsxh6dm1xays9pgx940pzmaq7vzb5ng4"; depends=[ggplot2 latexpdf png]; }; sport = derive2 { name="sport"; version="0.2.0"; sha256="1wb28iaa35naf5aczijb5g0l41yf098f7c20mjmkcd5w04l1mmks"; depends=[data_table ggplot2 Rcpp]; }; - sportyR = derive2 { name="sportyR"; version="2.0.1"; sha256="1pbfdyhp5i377g59bg74w026y4sxx12m5x53l1qk2bhvyiib4a12"; depends=[ggfittext ggplot2 glue]; }; + sportyR = derive2 { name="sportyR"; version="2.1.0"; sha256="0wbhj2r1b19x4qc1dfj1nk7wjrap0fzf1k7pmqq9xl3dyrgc8rch"; depends=[ggfittext ggplot2 glue]; }; spotGUI = derive2 { name="spotGUI"; version="0.2.3"; sha256="0hybpw0lgqrzrryfp08qvl42hrgdmx2hq7bavxjihm8mp0375dmz"; depends=[batchtools gridExtra httpuv plotly rclipboard rhandsontable shiny shinyBS shinydashboard shinyFiles shinyjs smoof SPOT XML]; }; spotidy = derive2 { name="spotidy"; version="0.1.0"; sha256="0hg8d3piiwp4q3257qsv5l41zc3c5a8mbq595ci63id8fc2q2pkd"; depends=[dplyr httr magrittr purrr]; }; - spotifyr = derive2 { name="spotifyr"; version="2.2.3"; sha256="1gpi7d40rdx4dvx5699xj5zisz48arwni18sszvp8phvhgqbj0lh"; depends=[assertthat dplyr genius ggridges httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble tidyr xml2]; }; spotoroo = derive2 { name="spotoroo"; version="0.1.2"; sha256="04zmb0smljr0yszhd789mqm5ds3l71k5cfd9v173d04r5vv8z77a"; depends=[cli dplyr geodist ggbeeswarm ggExtra ggplot2 ggrepel patchwork progress]; }; - spp = derive2 { name="spp"; version="1.16.0"; sha256="08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"; depends=[BH caTools Rcpp Rsamtools]; }; spqdep = derive2 { name="spqdep"; version="0.1.2"; sha256="0q2sp76kgrmw2w033m9i69vx0shziazr31akjmighcy1pdz3b695"; depends=[broom dplyr ggplot2 gridExtra gt gtools igraph lwgeom magrittr Matrix purrr rgeoda rsample sf sp spatialreg spdep tidyr]; }; - spray = derive2 { name="spray"; version="1.0-20"; sha256="0p8xwjwjrpfk5nwrap5vbnab4gpn6cjsgzkxbk70xdwbx3r1cv5z"; depends=[disordR magic mathjaxr partitions Rcpp]; }; + spray = derive2 { name="spray"; version="1.0-22"; sha256="1dzv0ciimiprxsmqb9b49sx4j3i6jakx4sw4bhhmfklsj0p018r2"; depends=[disordR magic mathjaxr partitions Rcpp]; }; spreadr = derive2 { name="spreadr"; version="0.2.0"; sha256="180dvr39i1glc0jllsnnglwrxh133q20v7px2fmdi7229pr175id"; depends=[assertthat extrafont ggplot2 igraph Matrix Rcpp]; }; spreval = derive2 { name="spreval"; version="1.1.0"; sha256="1zapfld0d6yyxqvijkb243zqin9xwqhmnznd2nnd4cp0rq3106zf"; depends=[interp timeDate]; }; sprex = derive2 { name="sprex"; version="1.4.1"; sha256="14idml4mipd4wyza7hqf49ww4dparmwaps35hxm8jg5h0w1pgh7j"; depends=[swfscMisc]; }; @@ -16979,8 +17088,7 @@ in with self; { springpheno = derive2 { name="springpheno"; version="0.5.0"; sha256="16pa56k1pbazv3vx5lhzc8n3pazrfh1q4bi7116bbvsdgpp9vs8g"; depends=[]; }; sprintr = derive2 { name="sprintr"; version="0.9.0"; sha256="0nnzjn7zrcgcmk3rs0hn56jcjrzrn5z0kc77bv4zzvbz5vr8gbwj"; depends=[glmnet Rcpp RcppArmadillo]; }; sprtt = derive2 { name="sprtt"; version="0.1.0"; sha256="1lj4qrn8ajl9lmx9qrcxrrd187khs3afvmf2hpwmakxfn6sajm0z"; depends=[]; }; - spruce = derive2 { name="spruce"; version="0.99.1"; sha256="1kklv4d2ycjcxv183cpqa6qn46zn8nww1z8xn4sy7ipz394i10cf"; depends=[BayesLogit dplyr ggplot2 igraph MCMCpack mvtnorm patchwork Rcpp RcppArmadillo rlang Seurat tidyr tidyselect truncnorm]; }; - sps = derive2 { name="sps"; version="0.2.0"; sha256="17ljrl3cn18isazi763iff5yxg916a5ck82mzc0clvxav1bcwyxr"; depends=[]; }; + sps = derive2 { name="sps"; version="0.3.0"; sha256="07y3hwkkzj8pd6by9wlipx1s7d2b4pj0kv3xv8g8ih4mriv33d8b"; depends=[]; }; spsComps = derive2 { name="spsComps"; version="0.3.2.1"; sha256="0b4bai6yk6spcansjfnxd5328jlf46cjqqjj3f5dd2kph2rx4kqw"; depends=[assertthat crayon glue htmltools magrittr R6 shiny shinyAce shinytoastr stringr]; }; spsUtil = derive2 { name="spsUtil"; version="0.2.2"; sha256="1hhiz2bmgrvpadag1d4ljynk7mhwknaslja9hcmf665l2x3hzdl6"; depends=[assertthat crayon glue httr magrittr R6 stringr]; }; spselect = derive2 { name="spselect"; version="0.0.1"; sha256="02aiml4dh40n6yl52ypramn4847ykdi4y5lhsmchnnp4nnnqycsn"; depends=[magic pracma tester]; }; @@ -16988,10 +17096,10 @@ in with self; { spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; }; spsur = derive2 { name="spsur"; version="1.0.2.5"; sha256="0ar1b48r2hi50rvzkr432lpcc4c9r72hxkz74gip5gf12i7mx2ci"; depends=[Formula ggplot2 gmodels gridExtra MASS Matrix minqa numDeriv Rdpack rlang sparseMVN spatialreg spdep sphet]; }; spsurv = derive2 { name="spsurv"; version="1.0.0"; sha256="11jlbzvzxv3d1d0nwpbii46ddvphglrxv25rw7pvxbybcx2i7k6x"; depends=[BH coda loo MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; - spsurvey = derive2 { name="spsurvey"; version="5.3.0"; sha256="1wvl6lbww82c1z83928zgn5l1ciayppb6k84l2syxn6fs1xjadbc"; depends=[boot crossdes deldir lme4 MASS sampling sf survey units]; }; + spsurvey = derive2 { name="spsurvey"; version="5.4.0"; sha256="1sd7h342yih8hgiry0zip0nymgnak5d67320kimv6ajrx13v23z3"; depends=[boot crossdes deldir lme4 MASS sampling sf survey units]; }; spt = derive2 { name="spt"; version="2.5.1"; sha256="04j38d2b35p4798znnc49vqrg8r8bygwi07vybfj3nzimlp2mkrn"; depends=[]; }; sptm = derive2 { name="sptm"; version="2019.11-25"; sha256="1hdymzngdppmh56dqh0k88n9hg68pbx9rgmimbz4ihnfx2plvadh"; depends=[kyotil survey survival]; }; - sptotal = derive2 { name="sptotal"; version="1.0.0"; sha256="0lcq7ldrgy93i1pk2hhwfmhqhmijv9g5p7jdsh9hrfky51w8vrql"; depends=[ggplot2 sp viridis]; }; + sptotal = derive2 { name="sptotal"; version="1.0.1"; sha256="09wkcc1lbc9d0m19ncqcb3xxgl30lyii6r5nqb9rbjqyf2jl2iak"; depends=[ggplot2 viridis]; }; spuRs = derive2 { name="spuRs"; version="2.0.2"; sha256="00c0hnyrcbkbj269czxbfgmgi88y0vxzm79sxclllkzr9rdd1p53"; depends=[lattice MASS]; }; spup = derive2 { name="spup"; version="1.3-2"; sha256="098zga5dm785v5k0s0ql6j17i6zbnka0yhfni4irlki3y1ndw78m"; depends=[gstat magrittr mvtnorm purrr raster sp whisker]; }; sqldf = derive2 { name="sqldf"; version="0.4-11"; sha256="0q12vsb53p2wchgp8wfz5bk08wfnm0jxjrakclj4jyy6x3a7ksff"; depends=[chron DBI gsubfn proto RSQLite]; }; @@ -17008,13 +17116,13 @@ in with self; { sra = derive2 { name="sra"; version="0.1.3"; sha256="0bdxgsz177szfqmvffidgkhl0lrdd7c1nzdvh7ijx99zmi5ww71n"; depends=[]; }; srcr = derive2 { name="srcr"; version="1.1.0"; sha256="1cv4j27w9lssllih0lg172x1p001sk13p9hg39579lx6rpb9l75q"; depends=[DBI dplyr jsonlite]; }; sregsurvey = derive2 { name="sregsurvey"; version="0.1.2"; sha256="1wsfjnkszxvx4pjgpi2v14s94d7rpl13pallja6rfcmsgxp3kc2l"; depends=[caret dplyr gamlss gamlss_dist magrittr TeachingSampling]; }; - srm = derive2 { name="srm"; version="0.3-6"; sha256="0mc97pv1hsmia4v2wyb8yi37i3v1xypfv9xmhjb989xnnysf1lm3"; depends=[Rcpp RcppArmadillo]; }; + srm = derive2 { name="srm"; version="0.4-26"; sha256="1cw0a0n1chnri6jmcav04qa52s8jakviwjpq1yx1x5z2ya978r26"; depends=[Rcpp RcppArmadillo]; }; srp = derive2 { name="srp"; version="1.2.0"; sha256="0xdzfvi7z78xmyxwd8fha3lr86jwmgjba1w8hhn4sv3v5gc9vlkh"; depends=[fda mgcv]; }; srt = derive2 { name="srt"; version="1.0.3"; sha256="0m94ycnrlgjvlx9jzb05rdg57yxwsw3p7zjih0m04vb1369j83q1"; depends=[]; }; srvyr = derive2 { name="srvyr"; version="1.1.2"; sha256="1qysngpvpyncv5hhnvkicsj0laxc44ljbndp0ycgk53rj60mczfg"; depends=[dplyr magrittr rlang survey tibble tidyr tidyselect vctrs]; }; ss3sim = derive2 { name="ss3sim"; version="1.0.3"; sha256="0s2yajlhi07fvqc0rr4msd9g2jrswb83dx55wsxnw925vikqa5kz"; depends=[bbmle foreach ggplot2 gtools r4ss]; }; ssMousetrack = derive2 { name="ssMousetrack"; version="1.1.5"; sha256="069jsp2l63jp4fv2hwadqxpkp89aqmbh439zy66rx55kws75b556"; depends=[BH CircStats cowplot dtw ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; - ssaBSS = derive2 { name="ssaBSS"; version="0.1"; sha256="1gprl725am933fqlhhxzwrg7k08sy0xndmg8v8hifxfwq9nbk0w9"; depends=[BSSprep ggplot2 ICtest JADE tsBSS xts zoo]; }; + ssaBSS = derive2 { name="ssaBSS"; version="0.1.1"; sha256="1sfhrp5y4hhnc417jq2vyk935iyicl58jbw4nwrj3rayh0ng7dbp"; depends=[BSSprep ggplot2 ICtest JADE tsBSS xts zoo]; }; ssanv = derive2 { name="ssanv"; version="1.1"; sha256="17a4a5azxm5h2vxia16frcwdyd36phpfm7fi40q6mnnrwbpkzsjd"; depends=[]; }; ssc = derive2 { name="ssc"; version="2.1-0"; sha256="1lq71p8hbjfg4a52009810k5dmhak9ddk1dywvhy7v2gjmxqnadw"; depends=[proxy]; }; sscor = derive2 { name="sscor"; version="0.2"; sha256="1kcrr90cxg6k4qkc3pidhkwf4dsnlgbxczxigr2afwpd9cpf104c"; depends=[mvtnorm pcaPP robustbase]; }; @@ -17026,7 +17134,7 @@ in with self; { ssfit = derive2 { name="ssfit"; version="1.2"; sha256="1xq3gb76hs1mypjn6zyhwki5qkw3bnj51ljm10khky607mq5qz6q"; depends=[survey]; }; ssgraph = derive2 { name="ssgraph"; version="1.14"; sha256="06cqa9q311jy4iggwh7vksxxkzy2lvrppqx2apc7gwmrslw1qzgl"; depends=[BDgraph]; }; ssh = derive2 { name="ssh"; version="0.8.2"; sha256="14sasc28ipjdhb0k8ziby2v4n8gfmsp917y9725h6fsq0n01p002"; depends=[askpass credentials]; }; - sship = derive2 { name="sship"; version="0.8.0"; sha256="0khmi81pw5vqv42v9iynq7r9jwan8g2xzlapp26y9i3kyxfavg17"; depends=[httr jsonlite openssl RCurl yaml]; }; + sship = derive2 { name="sship"; version="0.9.0"; sha256="0h0cbbvqfmik2z0qp34gym81p01x01yndymczb8vpqnj0nfnmyhc"; depends=[httr jsonlite openssl RCurl yaml]; }; ssimparser = derive2 { name="ssimparser"; version="0.1.1"; sha256="01c9kbvdrkchf4rad9hysyflpkgdj294lbk94fc5pkc49fqznmrx"; depends=[airportr dplyr magrittr stringr tidyr]; }; ssize_fdr = derive2 { name="ssize.fdr"; version="1.3"; sha256="1yirk6sl72d99sznvr5hm1sn4766sfrw66hhffb9g88b19lfpprd"; depends=[]; }; ssizeRNA = derive2 { name="ssizeRNA"; version="1.3.2"; sha256="1qw10yswzpg28fhvr6rsq0gh7xivfapw64gxc0hakb1nc31jf8ky"; depends=[Biobase edgeR limma MASS qvalue ssize_fdr]; }; @@ -17073,12 +17181,12 @@ in with self; { starma = derive2 { name="starma"; version="1.3"; sha256="07r0kyabhgbm2v39fcrw0qhxcxj9a9cb45g9chzcnn9qmvramcwx"; depends=[ggplot2 Rcpp RcppArmadillo scales]; }; starnet = derive2 { name="starnet"; version="0.0.6"; sha256="0gbg8svyj4nh846q7986ap7jjry599kb1348k9lifz19kvyr4rn4"; depends=[cornet glmnet Matrix survival]; }; starry = derive2 { name="starry"; version="0.1.1"; sha256="16qj20glr5xwh718r0mh0qgbqikwg3si78yxq61z16i3qfb0gdp6"; depends=[bslib dplyr ggplot2 magrittr shiny shinyjs shinyWidgets]; }; - stars = derive2 { name="stars"; version="0.5-6"; sha256="0qcli9bangpym4yp96yfibd5f4li5qw1622jnbvzfd9n8aakqhg0"; depends=[abind classInt lwgeom rlang sf units]; }; + stars = derive2 { name="stars"; version="0.6-0"; sha256="0zwbsqp8bihcq5sjdw05pvbh4l9s68p0qw3ffkk0jphsipvy9za9"; depends=[abind classInt lwgeom rlang sf units]; }; starsExtra = derive2 { name="starsExtra"; version="0.2.7"; sha256="06l9rpgw1dmvvn3389zzqrq4y87192k4zzj7xgvwzrdlrcxsqdh7"; depends=[mgcv nngeo sf stars units]; }; starsTileServer = derive2 { name="starsTileServer"; version="0.1.1"; sha256="04z3xaijhgn5g10vvx19lya6v17ypcq00w4jlgkap3fafw61pqhn"; depends=[assertthat leaflet plumber png R6 rlang sf stars units]; }; starschemar = derive2 { name="starschemar"; version="1.2.0"; sha256="0jjaic1zwdc3lvdlgs0vzkjjivjs2dskmhx4qg469ban34az0591"; depends=[dplyr generics pander purrr readr rlang snakecase tibble tidyr tidyselect]; }; - startR = derive2 { name="startR"; version="2.2.0"; sha256="12kigspfpmzibnr7y8m906qj1hm596wx8asghi0fd4598nk1w0s3"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply PCICt s2dv]; }; - starter = derive2 { name="starter"; version="0.1.11"; sha256="1jxwg09dl6mx4zxz8gx45kd0mfd87nhkai0p64z5wmvhds6syfbz"; depends=[cli dplyr gert glue here R_utils renv rlang rstudioapi]; }; + startR = derive2 { name="startR"; version="2.2.1"; sha256="1sjhyv4rnb42pa5p4lz9dn87jl5npdclllpypkxs1wbi5241ajcd"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply PCICt s2dv]; }; + starter = derive2 { name="starter"; version="0.1.12"; sha256="1ydqz8m9zfis0gv9sx12gs4m9kz7xk9f2l55pzifwl0m61a04c65"; depends=[cli dplyr gert glue here R_utils renv rlang rstudioapi]; }; starticles = derive2 { name="starticles"; version="0.1.0"; sha256="11jmjsbzniyfnszfffhr78rqa588y77rlx2sbp92a3jpmcbx0h56"; depends=[bookdown knitr rmarkdown]; }; startup = derive2 { name="startup"; version="0.19.0"; sha256="00rqvk6acg28ls4p8gfdxvzmpmkgx6gk52vdjxh63l1a50xgymg6"; depends=[]; }; startupmsg = derive2 { name="startupmsg"; version="0.9.6"; sha256="0vkqxir4ady4dn9s70dfg1fxck2xg8vnmrmxjzvk01i6pc9zyq0x"; depends=[]; }; @@ -17101,8 +17209,8 @@ in with self; { statgenGxE = derive2 { name="statgenGxE"; version="1.0.5"; sha256="1kq5bin4k66d8l9l4z2b0gx6s8ick5fim0qcsjayvgip25gkxf5z"; depends=[emmeans ggplot2 gridExtra knitr lme4 statgenSTA xtable]; }; statgenHTP = derive2 { name="statgenHTP"; version="1.0.5"; sha256="1lclxc4al3h7z5cbjhmm6p1hr22gysz16hlvfams37czbc2prlha"; depends=[animation factoextra ggforce ggnewscale ggplot2 gridExtra locfit lubridate reshape2 scales SpATS]; }; statgenIBD = derive2 { name="statgenIBD"; version="1.0.5"; sha256="0jiw3rivlmgg883m8jsjzq6gckb2vim4fx1kr1rb3r76i8q2p1ql"; depends=[data_table ggplot2 Matrix Rcpp RcppArmadillo stringi]; }; - statgenMPP = derive2 { name="statgenMPP"; version="1.0.1.1"; sha256="1i7ybvpxs1n1abvk2in5ydhcr5dcvmwqik6w7hn6nw7ak4dg3jws"; depends=[data_table foreach ggplot2 gridExtra LMMsolver Matrix scales spam statgenGWAS statgenIBD stringi]; }; - statgenSTA = derive2 { name="statgenSTA"; version="1.0.9"; sha256="1j9z10zkjwmbg4wgr0bs34dh7qmdkjm2xa6hl4ka1rbj0sn435ld"; depends=[emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl scales SpATS xtable]; }; + statgenMPP = derive2 { name="statgenMPP"; version="1.0.2"; sha256="1qpf9gic9671hr6zyj56sqwx9wl51qr6gj84rfssdla718h766im"; depends=[data_table foreach ggplot2 gridExtra LMMsolver Matrix scales spam statgenGWAS statgenIBD stringi]; }; + statgenSTA = derive2 { name="statgenSTA"; version="1.0.10"; sha256="0ki6k1j8fxfys787bmk6drl900c5qkqp2271l4zyh1nn2750z35s"; depends=[emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl scales SpATS xtable]; }; static = derive2 { name="static"; version="0.1.0"; sha256="1n9ijilh81w2fz4cyd4abjj7qam8q7rirmp8lni5cxsb4il0qbfa"; depends=[]; }; stationaRy = derive2 { name="stationaRy"; version="0.5.1"; sha256="1620fdlybn3hr96yngnp802imr9b7n90835lyyd86r2wn6psdzvl"; depends=[downloader dplyr lubridate lutz magrittr progress readr stringr tidyr]; }; stationery = derive2 { name="stationery"; version="1.0"; sha256="07kwlmambjv7njgpw1dhsm2zrv1lk6xj2k6a6psysjllrf5zz8ga"; depends=[knitr kutils rmarkdown]; }; @@ -17112,13 +17220,13 @@ in with self; { statnet = derive2 { name="statnet"; version="2019.6"; sha256="17dj6vjnjyqrfhzjq1lys5b29j942kd15zffb69jidni3slf20q9"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm tsna]; }; statnet_common = derive2 { name="statnet.common"; version="4.7.0"; sha256="1cx1h1yzs8jjxk10y2h0wl69caspzgx5wdqp36dp4sxm0sk335xn"; depends=[coda]; }; statnetWeb = derive2 { name="statnetWeb"; version="0.5.6"; sha256="1haf2kr1mwvaz4hlwla2ysbcy3sbfcg3i4hyiy9y6lcffvy4w9w0"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; - statnipokladna = derive2 { name="statnipokladna"; version="0.7.0"; sha256="0xds27abs9x853nhy5xljldmxh5xrkxfgn5q6qw8b093ynrsvbrp"; depends=[curl dplyr httr jsonlite lifecycle lubridate magrittr purrr readr rlang stringi stringr tibble tidyr tidyselect usethis xml2]; }; + statnipokladna = derive2 { name="statnipokladna"; version="0.7.2"; sha256="1n7gvr57c27ilxrnpmr0bz6hc0d39lp6rnn4dkqdwdapzyhfymq4"; depends=[cli curl dplyr httr jsonlite lifecycle lubridate magrittr purrr readr rlang stringi stringr tibble tidyr xml2]; }; statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; }; statpsych = derive2 { name="statpsych"; version="1.2.0"; sha256="1vi2zja65ypny3p4wxb27aw9hl1mb7xbrdpl602bv1wxxbvw87ql"; depends=[mathjaxr mnonr Rdpack]; }; statquotes = derive2 { name="statquotes"; version="0.3.1"; sha256="08xvnqbh0ax261hhgq1pkmcpvdcy44nhhmsxaapy9q8ppfvn7vi1"; depends=[stringr tidytext wordcloud]; }; - stats19 = derive2 { name="stats19"; version="2.0.0"; sha256="0minav2ab9xa9xq5mardjcijaxhs3v1izxmy15v5zf04lhvz4f03"; depends=[readr sf]; }; + stats19 = derive2 { name="stats19"; version="2.0.1"; sha256="1qjf0q952qffphia6h7haff764k9iiwm9lyw9h5jcga03q733myb"; depends=[readr sf]; }; stats4teaching = derive2 { name="stats4teaching"; version="0.1.0"; sha256="1i2v97k6c75096hp23zpffmdbajdzzkqp508p9dvw841vpx2wxdn"; depends=[asbio car clusterGeneration knitr MASS MVN nortest psych pwr rstatix]; }; - statsExpressions = derive2 { name="statsExpressions"; version="1.3.4"; sha256="12ji5j8y62j44f4zzxhvxhzw3zr0dgdfnmi5y09k3j66mx8spv77"; depends=[BayesFactor correlation datawizard dplyr effectsize glue insight magrittr parameters performance rlang tibble tidyr WRS2 zeallot]; }; + statsExpressions = derive2 { name="statsExpressions"; version="1.3.5"; sha256="0phjaxyq04ysrchimq5q9i3zzy0qhrs5r08m2l14k35s2303s285"; depends=[BayesFactor correlation datawizard dplyr effectsize glue insight magrittr parameters performance rlang tibble tidyr WRS2 zeallot]; }; statsearchanalyticsr = derive2 { name="statsearchanalyticsr"; version="0.1.4"; sha256="0m2zv5sgv7w9yk6q7rwx8x2zy6xx5w0d6c9vynddr08pn4mdqjhs"; depends=[glue httr jsonlite lubridate purrr stringr tibble tidyr]; }; statsr = derive2 { name="statsr"; version="0.3.0"; sha256="138yjifz8q3dqcm3wbzn4sxdydwnqvwkz0h20r8ls3pijqh6fc2y"; depends=[BayesFactor broom cubature dplyr ggplot2 gridExtra knitr rmarkdown shiny tibble tidyr]; }; statswalesr = derive2 { name="statswalesr"; version="0.2.0"; sha256="03h0gq8ag51my5z8mw78rhbkksfpa7af8my6lb468wrcfv69k0gl"; depends=[curl dplyr httr jsonlite rlang]; }; @@ -17130,6 +17238,7 @@ in with self; { stdvectors = derive2 { name="stdvectors"; version="0.0.5"; sha256="0gxylknr146qyg9aj22md076cdhrsz75dg25a1hx8525cm71nwd6"; depends=[Rcpp]; }; steadyICA = derive2 { name="steadyICA"; version="1.0"; sha256="0mcalbsgajdpk45k9vpyavn079063hw4ihkw72n9wcy5nb0da14g"; depends=[clue combinat MASS Rcpp]; }; steepness = derive2 { name="steepness"; version="0.3-0"; sha256="1lv2n4s8dj7axsmwmpfp4aw6v530r7437f44533pbx6p4n71hpzl"; depends=[]; }; + stelfi = derive2 { name="stelfi"; version="0.0.1"; sha256="0rjkvrn3vwd4mzb2042syfhds4za4cqqlhjs6l95d09rn1q7nahx"; depends=[dplyr ggplot2 gridExtra Matrix RcppEigen sf TMB]; }; stellaR = derive2 { name="stellaR"; version="0.3-4"; sha256="0spn25fbsfswx2rshzk34pqkicynyl256a4f7xrh51bhyh9qff44"; depends=[]; }; stemmatology = derive2 { name="stemmatology"; version="0.3.2"; sha256="1l2y4jlszz1dnafdl2wqqfgdjis07i3gzfnp1v1af32pvjy4zqhw"; depends=[cluster igraph xml2]; }; stenR = derive2 { name="stenR"; version="0.6.9"; sha256="19vn7123wys1jqrm4y8f6b4kvwygi1ql6ady2d5jz93vf29ihdzj"; depends=[cli data_table dplyr moments R6 rlang]; }; @@ -17137,26 +17246,28 @@ in with self; { stepPenal = derive2 { name="stepPenal"; version="0.2"; sha256="08gizl6c606ibbv7x2rdvfw37rghkrprwszha79yngkzpajw8gql"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; }; stepR = derive2 { name="stepR"; version="2.1-3"; sha256="1v1q4skd3k74nsdkv4ly5h1w10hlxpzcscswghan8r27k502vq12"; depends=[digest lowpassFilter R_cache Rcpp]; }; - stepSplitReg = derive2 { name="stepSplitReg"; version="1.0.2"; sha256="1fpnni4fz8hh9z0yld696wz2qpc2bwajp8pyfgjms9f2figx9prl"; depends=[nnls Rcpp RcppArmadillo SplitGLM]; }; + stepSplitReg = derive2 { name="stepSplitReg"; version="1.0.3"; sha256="04ks599bb3rbyc81kyakj6nmj7i8fvkb1pild0gd3i6j84j70071"; depends=[nnls Rcpp RcppArmadillo SplitGLM]; }; stepdownfdp = derive2 { name="stepdownfdp"; version="1.0.0"; sha256="1yqzxn4d52ih03f0mpvb9dw9pn9jfbgnyay1pfhh112zml5h6i3m"; depends=[pracma]; }; stepgbm = derive2 { name="stepgbm"; version="1.0.0"; sha256="1psjnxc7dadbm1405wm3vgsf9m2pn8bm82rn9md3cxhp33jqh1bx"; depends=[gbm spm steprf]; }; stepjglm = derive2 { name="stepjglm"; version="0.0.1"; sha256="0xsb0wg7ka4ska2jkzaic7kqdzj2fkhpf5sxr3a116f2najj9ax2"; depends=[rsq]; }; + stepmixr = derive2 { name="stepmixr"; version="0.1.0"; sha256="1psq9znrk3za9cgvhbnfh7jy77mwr2h03y5iqdk8za3n6dy0fdg0"; depends=[reticulate]; }; stepp = derive2 { name="stepp"; version="3.2.5"; sha256="0srjx950hy7v1xmhhnimvndpyz2wm8l03z67z0zxjg2w7wnqrqvs"; depends=[car rstudioapi scales survival]; }; steprf = derive2 { name="steprf"; version="1.0.2"; sha256="1wscxnglxi61agmfn1zmhh75c7h5394r8d8khr02p22a234npqqi"; depends=[psy randomForest spm spm2]; }; steps = derive2 { name="steps"; version="1.3.0"; sha256="0yvqz5jhzwqkm3gphb2mmlq1ip6sr8g6c09hirs827j12dj63ixf"; depends=[future future_apply memuse raster rasterVis Rcpp viridisLite]; }; - stevedata = derive2 { name="stevedata"; version="0.7.0"; sha256="1shi1abzf4vkz790f6b4720g28hh6kzsi40mdw7gp9xwr97a1dyz"; depends=[]; }; - stevedore = derive2 { name="stevedore"; version="0.9.4"; sha256="0qf7qid8sv3agzci7kvgh204h3p6bk60bh45zri987j2qqjjxiiy"; depends=[crayon curl jsonlite yaml]; }; + stevedata = derive2 { name="stevedata"; version="0.8.0"; sha256="0cf0mik421j607bc9ymyf89qd8fzaqibskhkfzqlv4qqj2xab4l5"; depends=[]; }; + stevedore = derive2 { name="stevedore"; version="0.9.5"; sha256="0xxslmll3xg2a71k3bgxfdkz0xcvlsy0cgm9l5din0ml55f3xz5n"; depends=[crayon curl jsonlite yaml]; }; stevemisc = derive2 { name="stevemisc"; version="1.4.1"; sha256="1d0avg7f1r95k6dvm1vhvji2gadqxkm77pbnljad2p4145sxc41x"; depends=[arm dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble tidyr]; }; stevetemplates = derive2 { name="stevetemplates"; version="0.8.0"; sha256="0rm39jrzzi10ncl59xhixy0a9fiwqw5s10pxr90gckscxz1bjkwc"; depends=[rmarkdown]; }; stfit = derive2 { name="stfit"; version="0.99.9"; sha256="0668nnsgkdd2v7bx06wnq8sc0asbi19p4752jm0hj2jziiibk0kn"; depends=[abind doParallel fda foreach Matrix raster rasterVis RColorBrewer Rcpp]; }; sticky = derive2 { name="sticky"; version="0.5.6.1"; sha256="1szfpay9cpdwq6v5fmnjyr00r4zhz6zd2rrl3h88v9l5xpfafi4w"; depends=[]; }; + stickyr = derive2 { name="stickyr"; version="0.1.0"; sha256="0wqk4w732xb8dhbjfy1q613pia9rrmilsbpngacgw9sinsd1iq6m"; depends=[dplyr ellipsis generics pillar purrr rlang tibble tidyselect vctrs]; }; stilt = derive2 { name="stilt"; version="1.3.0"; sha256="0b1bs849hw2wcvaldybxk8h8wgwl6p7x4i7winncvngmhplgrvx4"; depends=[fields]; }; stima = derive2 { name="stima"; version="1.2.1"; sha256="091pjjr2pvd93l01szyj5gr9ixv1h90yd18h678nhpn0fncimszv"; depends=[rpart]; }; stinepack = derive2 { name="stinepack"; version="1.4"; sha256="0crl77gr4x2bz2zp0a0lqiw5iqlrcx7vj67igkbzg64d1fxai85d"; depends=[]; }; stlARIMA = derive2 { name="stlARIMA"; version="0.1.0"; sha256="1bh88dd9md8w8qhmha02v2b7cz0pfk6yrc5bhxj8xv9cwanl7g6r"; depends=[forecast]; }; stlELM = derive2 { name="stlELM"; version="0.1.1"; sha256="1q3lcfqq06jfky388v7iilnnqbr5f4gq451xkc2kl04yl0dwcv2h"; depends=[forecast nnfor]; }; stlTDNN = derive2 { name="stlTDNN"; version="0.1.0"; sha256="1j2f9kxlry15xp7bc03h5jr7v8gzq8frdxyzhq9s78m3d3dbixf4"; depends=[forecast nnfor]; }; - stlnpp = derive2 { name="stlnpp"; version="0.3.8"; sha256="1lx2fkqal2mf55xx0rwy9wf9fkr9n0vrp8fwic4grjcq0v5cf75k"; depends=[spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; }; + stlnpp = derive2 { name="stlnpp"; version="0.3.9"; sha256="0d8afddz7gwdmrciz8bvwfxil7bfpf9h81rcb52mmr7j9da36mp4"; depends=[spatstat spatstat_explore spatstat_geom spatstat_linnet spatstat_random]; }; stlplus = derive2 { name="stlplus"; version="0.5.1"; sha256="14728xsm982z9sg4rbqg307pbwqlsiyzj8z3sr9wr6fi0dayf6z5"; depends=[lattice Rcpp yaImpute]; }; stm = derive2 { name="stm"; version="1.3.6"; sha256="0qwq4nin2n9fjd06852r8k7arvcgh46kcfb3lm21swgx6j8bgrhb"; depends=[data_table glmnet lda Matrix matrixStats quadprog quanteda Rcpp RcppArmadillo slam stringr]; }; stmCorrViz = derive2 { name="stmCorrViz"; version="1.3"; sha256="1a4pckrbzsihyf1bqvw3cl0hxrc4yq1pnkgxgf4b8jday6zkxwcv"; depends=[jsonlite SnowballC stm tm]; }; @@ -17165,6 +17276,7 @@ in with self; { stminsights = derive2 { name="stminsights"; version="0.4.1"; sha256="1ll2chjz9r08lya2z7dnxjqdnwrvw7jn05mpvvxi1w8s2npsggib"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr readr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; }; stoRy = derive2 { name="stoRy"; version="0.2.0"; sha256="1mxnnmg6wqp40hyh2mjd39vpzks78rr59pdlyxljlpnlslgkf1md"; depends=[cli crayon dplyr fansi httr lifecycle purrr R6 rappdirs readr rlang stringr tibble tidyjson tidyr]; }; stocc = derive2 { name="stocc"; version="1.31"; sha256="0d0n9nrcva0vradippq30y6dc6klwd1mllnzpnzq9rczpz5cw7mw"; depends=[coda fields Matrix rARPACK truncnorm]; }; + stochLAB = derive2 { name="stochLAB"; version="1.1.1"; sha256="11vk5vd8y4md29cawf2x9m9zrmd0rl6vbfmhs4fzkcm4xsyp1brh"; depends=[cli dplyr glue logr magrittr msm pracma purrr rlang tibble tidyr]; }; stochQN = derive2 { name="stochQN"; version="0.1.2-1"; sha256="1lfzivl745dj94kap103arz0zy75wk69kc6v84xaaxk7ad3icnaj"; depends=[]; }; stochprofML = derive2 { name="stochprofML"; version="2.0.3"; sha256="0j6m2byh7w9kcbp3mfvmg6fm6z0dq8k4qabj1yfkl0d1y2ifd1zd"; depends=[MASS numDeriv]; }; stochvol = derive2 { name="stochvol"; version="3.2.0"; sha256="1ix8x3gmm5advdxk0rd0p26x3487qmw6pv4mi628vjqpmvnv42fr"; depends=[coda Rcpp RcppArmadillo]; }; @@ -17174,7 +17286,7 @@ in with self; { stockfish = derive2 { name="stockfish"; version="1.0.0"; sha256="1il3na3d96k34vj62pvxrs2ah3a9ly8ww3gi3nr0459piw4wd611"; depends=[processx R6]; }; stocks = derive2 { name="stocks"; version="1.1.4"; sha256="0b6rl7pfkgzbpwnv7zzkr36hs5f1zb60d16ijslf7g9m25vvcyg6"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp TTR zoo]; }; stoichcalc = derive2 { name="stoichcalc"; version="1.1-4"; sha256="06q35faqrcarx6n00i5s45ynpwi6n6xizyr8w9c436c4ahg0xvyh"; depends=[]; }; - stokes = derive2 { name="stokes"; version="1.1-3"; sha256="0d15x80vn6g0fwvphdqdl7fyldzw5pcrjlx5c93bdcx1kx2g7sqa"; depends=[disordR mathjaxr partitions permutations spray]; }; + stokes = derive2 { name="stokes"; version="1.1-6"; sha256="074kzvzgk83n2bzcvygxiy8cm5sxswkp593rjixa4kvaqc7g7w0y"; depends=[disordR mathjaxr partitions permutations spray]; }; stopdetection = derive2 { name="stopdetection"; version="0.1.1"; sha256="07l2rr047p0hpvgmr7c5x0by456n107r9d0qj4xrrigq5i6srrqk"; depends=[data_table geodist lubridate]; }; stoppingrule = derive2 { name="stoppingrule"; version="0.1.0"; sha256="045z4bfvqkf62bmm4zaifl34hbcd191jv77s8ddbv1a7nqc52ds1"; depends=[]; }; stopwords = derive2 { name="stopwords"; version="2.3"; sha256="1ci1cgxrcvlhhplximsfv0plvjdbcd5kv0nphxnpildsn5m1rv65"; depends=[ISOcodes]; }; @@ -17182,15 +17294,15 @@ in with self; { stortingscrape = derive2 { name="stortingscrape"; version="0.1.2"; sha256="0dy9cw20wxnghli8p1zf8dn2ms38p33521inr7x2vxnj80qpvkjk"; depends=[dplyr httr rvest stringr]; }; storywranglr = derive2 { name="storywranglr"; version="0.2.0"; sha256="07w3dwv2naqbbdzjcv58cisj7cv1rbhrk96a30q8ww11rf953rj4"; depends=[dplyr httr jsonlite tibble urltools]; }; stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; }; - stplanr = derive2 { name="stplanr"; version="1.0.1"; sha256="0x4v7c6cdg6hdw5f65jk6bb4cp85khhc1dgvwcxy1yjzjd4g7b3k"; depends=[curl data_table dplyr httr jsonlite lwgeom magrittr nabor od pbapply Rcpp rlang sf sfheaders]; }; + stplanr = derive2 { name="stplanr"; version="1.0.2"; sha256="0wp9vxv9z7qm6k5kmsilpdaabgmwx4r3hyr4bggjwrpcf0bd59x9"; depends=[curl data_table dplyr httr jsonlite lwgeom magrittr nabor od pbapply Rcpp rlang sf sfheaders]; }; stpm = derive2 { name="stpm"; version="1.7.12"; sha256="16kp69356bj1s26iwwysxdyr87kd3jqhj2gmmz4vc003ai63ga6y"; depends=[MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; - stpp = derive2 { name="stpp"; version="2.0-6"; sha256="0ii799kqn8ydgi4bqs292fff7my5fdbrvwnizqphbk7k8xf4w5vx"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_core spatstat_geom spatstat_random splancs]; }; + stpp = derive2 { name="stpp"; version="2.0-7"; sha256="1w9jn71ha817gldfhkmr2vfx3nkr78g1y662rfxg6flx2wyxs3kq"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_explore spatstat_geom spatstat_random splancs]; }; stppSim = derive2 { name="stppSim"; version="1.2.7"; sha256="1hg53fxpp4k6vfafd1aasjf4z1vaik5y137i424jhbxf69aqgl2b"; depends=[chron cowplot data_table dplyr geosphere ggplot2 gstat ks leaflet lubridate magrittr raster rgdal sf SiMRiv sp sparr spatstat_geom splancs stringr terra tibble tidyr]; }; str2str = derive2 { name="str2str"; version="0.2.1"; sha256="180m261hr0qr3mnm8hbvjbw3q44cr1kfrnq97fvkpypigdycd9z4"; depends=[abind checkmate plyr reshape]; }; strand = derive2 { name="strand"; version="0.2.0"; sha256="0gd9nnbdilvk4bszg77bxilan6qpg1np7c38w1b7j5sr3r30y5in"; depends=[arrow dplyr ggplot2 lubridate Matrix R6 Rglpk rlang tibble tidyr yaml]; }; strap = derive2 { name="strap"; version="1.6-0"; sha256="1c4p9gjjjjc7zjml7r7qhb040va8s4x16jqia3j1j5h56d6wlh7m"; depends=[ape geoscale pbapply]; }; strat = derive2 { name="strat"; version="0.1"; sha256="1axxrp750kjzcgxjdqfscjmryv1mkv4l23zk8k23z8l4ymhd2f5w"; depends=[Hmisc Rcpp RcppArmadillo]; }; - stratEst = derive2 { name="stratEst"; version="1.1.4"; sha256="1g764h17sh499p0a5ixs61q8l1hssvi7v4c34i90rdf81l72i0mg"; depends=[Rcpp RcppArmadillo]; }; + stratEst = derive2 { name="stratEst"; version="1.1.6"; sha256="0m41866xr21h4mih4z98y6pcrp2ws0mxxx157vdhbv7rhlh5djvp"; depends=[Rcpp RcppArmadillo]; }; stratallo = derive2 { name="stratallo"; version="2.1.0"; sha256="1j3ncm0plpgg3crbw69ksy7fy2db464dim1pmgslcmh0y5lvwy38"; depends=[checkmate lifecycle]; }; stratamatch = derive2 { name="stratamatch"; version="0.1.9"; sha256="1z395355kac0wd4f0m1ijh851m046ra8h1wam04if4qp00ychajp"; depends=[dplyr Hmisc magrittr rlang survival]; }; stratbr = derive2 { name="stratbr"; version="1.2"; sha256="15vkymmc61yz9szhfhc5663hfyqvh499ahwhr9mv1lhv5bikk0kb"; depends=[Rglpk snowfall stratification]; }; @@ -17212,11 +17324,11 @@ in with self; { strider = derive2 { name="strider"; version="1.3"; sha256="114j0qpdyg8rrhj68zq596pgc4h7ja39n0rfxf0x9qg7imhaj1h6"; depends=[BH Rcpp]; }; string2path = derive2 { name="string2path"; version="0.1.1"; sha256="1wlyrx7gbqjbzhd6xgmbhr3x09lk48yb110dmgxqh48gjky2ngvh"; depends=[cli tibble]; }; stringb = derive2 { name="stringb"; version="0.1.17"; sha256="0bfwwbg64nzxrx30cndqvdlhanjkx6875lg5dzm9cbwvwg2wbxcn"; depends=[backports]; }; - stringdist = derive2 { name="stringdist"; version="0.9.9"; sha256="0pkggr25azadczhnsxc9wh1753wigf3wijyvwfc2ip5a42c1f55x"; depends=[]; }; + stringdist = derive2 { name="stringdist"; version="0.9.10"; sha256="1s3cy2q6l4ppgslwfbfydi5f3kzshfhzkb25gz546n7jgw5jxm3g"; depends=[]; }; stringfish = derive2 { name="stringfish"; version="0.15.7"; sha256="0ddpsi7z0kzqgbq9y646pk9afclq0r7ak22zsdh0i93ni0x71c9l"; depends=[Rcpp RcppParallel]; }; stringformattr = derive2 { name="stringformattr"; version="0.1.2"; sha256="0x56k30clj5ajk0qg5sr8b9l0asz6ldivwr1ddy1vp1djliih1fx"; depends=[stringr]; }; stringi = derive2 { name="stringi"; version="1.7.8"; sha256="074b8wky3dhm4vcdqliwz6cqw20ah2x4dcasvnidilbfrnqii2ak"; depends=[]; }; - stringr = derive2 { name="stringr"; version="1.4.1"; sha256="1cfw1lv64lzg16zb04c0fcmd3gx8vq9x73hqikqhgqd3ra88w3gc"; depends=[glue magrittr stringi]; }; + stringr = derive2 { name="stringr"; version="1.5.0"; sha256="0fk34ql5ak57f06l10ai300kxay6r7kkkyfanh8r24qaf3bmkcaj"; depends=[cli glue lifecycle magrittr rlang stringi vctrs]; }; stringx = derive2 { name="stringx"; version="0.2.4"; sha256="1l87y6akq3a6fv1s7imn5g3rsmsbijqk6a3gcfws1i1g59ripznx"; depends=[stringi]; }; strip = derive2 { name="strip"; version="1.0.0"; sha256="1j3kq6w8k66z45rpd1cgxplpnldzbyqklgs4bnbv906pyd8wk9ak"; depends=[rlist]; }; stripless = derive2 { name="stripless"; version="1.0-3"; sha256="08mdp7kq6r5bk77j09477d1dnn7iwa346pr24b5bqsxwnbknyrsr"; depends=[lattice]; }; @@ -17228,7 +17340,7 @@ in with self; { stuart = derive2 { name="stuart"; version="0.10.1"; sha256="03rd3h2xs3n5xz9zbahi6mwap7yj22b7p71gp0dq04xszfi3jdkc"; depends=[]; }; studentlife = derive2 { name="studentlife"; version="1.1.0"; sha256="1xvlcwg7ckxsm5hb5ax8r3hzdqnx61ax59ini5xc5jrsmir13g67"; depends=[crayon dplyr ggplot2 jsonlite purrr R_utils readr skimr tibble tidyr visdat]; }; studyStrap = derive2 { name="studyStrap"; version="1.0.0"; sha256="0lvzqnq40j0xn74qrj0pqhr8zz34mbhfd7dg8bnadscsvj5ffm4c"; depends=[caret CCA dplyr MatrixCorrelation nnls pls tibble tidyverse]; }; - styler = derive2 { name="styler"; version="1.8.0"; sha256="1iw4nj68aj4psysrpyy7s6g3r3vhpfk8s05n6d20m2qmmk0p92sg"; depends=[cli magrittr purrr R_cache rlang rprojroot vctrs withr]; }; + styler = derive2 { name="styler"; version="1.8.1"; sha256="1sc1xr9pfrbd2yyzyyxpj8dd81djmsr00gxgr0mr18habyl5yl0m"; depends=[cli magrittr purrr R_cache rlang rprojroot vctrs withr]; }; stylest = derive2 { name="stylest"; version="0.2.0"; sha256="1c036zsn1gi5vhsz37p56wz1bcr3pwdp2k62j7ikmrrnkcv2w9kz"; depends=[corpus Matrix]; }; stylo = derive2 { name="stylo"; version="0.7.4"; sha256="0vjfpz4bpdrsax7a0gsj9cwddbsayb4n5fr5xskz63lfrjg2ppcb"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; suRtex = derive2 { name="suRtex"; version="0.9"; sha256="0xcy3x1079v10bn3n3y6lxignb9n3h57w4hhrvzi5y14x05jjyda"; depends=[]; }; @@ -17240,7 +17352,7 @@ in with self; { submax = derive2 { name="submax"; version="1.1.1"; sha256="0b9x55gqzw20smr3hx9izvyr0i8zv0h03hadn4c7ks7w8ga5i0kj"; depends=[mvtnorm sensitivityfull]; }; subniche = derive2 { name="subniche"; version="1.5"; sha256="1w5xsfqq1y9gy8wrxmfxk02jhzmyg2cdky7vm7qdcg9l63dhracj"; depends=[ade4 polyclip SIBER wordcloud]; }; subplex = derive2 { name="subplex"; version="1.8"; sha256="19g5bd39gmcn27xdsklkzxg99x1r5v5q8zcw1iwry31qj24ivhrv"; depends=[]; }; - subrank = derive2 { name="subrank"; version="0.9.9.1"; sha256="19lgw7248jq6b34i17c7vw208wsvmppni7njswd02i9xdgyjn95z"; depends=[]; }; + subrank = derive2 { name="subrank"; version="0.9.9.2"; sha256="19mxmapxjqv1k26bnis4zkrqpgvl8m0gdxqqzkdvgq89c6y9v3mj"; depends=[]; }; subsamp = derive2 { name="subsamp"; version="0.1.0"; sha256="1bfz2z2qy1war3id8qr1asygwvwxgf2hhlh075hr6bjdkxz0j0nd"; depends=[]; }; subscore = derive2 { name="subscore"; version="3.3"; sha256="01y7bp7nj0p47n69pxvj2gyrcvgj617ymhwhxlqp0jrkns1wqjy5"; depends=[boot cocor CTT irtoys ltm sirt]; }; subscreen = derive2 { name="subscreen"; version="3.0.7"; sha256="0vxwyx08bjha7vgv3lcgigar43f74fr3w7wna6z8viawh3bc7k96"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr purrr ranger shiny shinyjs shinyWidgets]; }; @@ -17253,6 +17365,7 @@ in with self; { suddengains = derive2 { name="suddengains"; version="0.4.4"; sha256="160jna9imnpy91f6pa881w6wlrwy59db0nijrn1sf5ym1cmh5gz5"; depends=[dplyr forcats ggplot2 ggrepel magrittr naniar patchwork psych readr rlang scales stringr tibble tidyr]; }; sudoku = derive2 { name="sudoku"; version="2.8"; sha256="1z130cx30wdqch0a4f27aa9v3v29hx6d5zav308abx42s4ilysbs"; depends=[]; }; sudokuAlt = derive2 { name="sudokuAlt"; version="0.2-1"; sha256="1y3li64xqag2ia8dg7q49jmlb1awl92rz6xa9zsbf0s9jman9wj9"; depends=[magrittr]; }; + sugarbag = derive2 { name="sugarbag"; version="0.1.6"; sha256="0xgazjr55cdjcxngpfasq17pc72lkg2p9jfzfpmwkjrpvsqw8dff"; depends=[dplyr geosphere progress purrr rlang rmapshaper sf tibble tidyr]; }; sugrrants = derive2 { name="sugrrants"; version="0.2.8"; sha256="08cs74afpkvjh32hlrwbl8sdsi3p0ga4ziw32r9pihs28a060fam"; depends=[dplyr ggplot2 gtable lubridate rlang]; }; sumFREGAT = derive2 { name="sumFREGAT"; version="1.2.5"; sha256="10clll3c0ws2mccdp9grz3qw75kv7ydffak2vv9ijky8n1b39qa7"; depends=[GBJ Matrix seqminer]; }; sumR = derive2 { name="sumR"; version="0.4.10"; sha256="0gijisv3bslyhflik06nc54bbg7z84a1yc97cq3d41ad1q0ch7gk"; depends=[matrixStats]; }; @@ -17273,6 +17386,7 @@ in with self; { supercompress = derive2 { name="supercompress"; version="1.1"; sha256="1kz04m37r1g4lx4y0kzjn77p3wra2rq21y93v9llikycsh6vzwp1"; depends=[FNN]; }; superdiag = derive2 { name="superdiag"; version="2.0"; sha256="0zfy9ain6agh276av0p66mks3rap42n8yma0dr6qbc14z3nh8w0m"; depends=[coda]; }; superheat = derive2 { name="superheat"; version="0.1.0"; sha256="01v8s6px1k5fajlm6py3ksr1i853kwwlky1yryzhy3p1cxhwgg83"; depends=[dplyr ggdendro ggplot2 gtable magrittr plyr scales]; }; + superml = derive2 { name="superml"; version="0.5.6"; sha256="159a80v9a1z2xq0xriqaa5xb7r5slww899vhng5l73c14615jzqw"; depends=[assertthat BH data_table Metrics R6 Rcpp RcppArmadillo]; }; supernova = derive2 { name="supernova"; version="2.5.3"; sha256="1ci1zdvxpa33xbvkh0ly5x20w0h21j1x1d9iwgrn7kgccz56vrir"; depends=[backports cli ggplot2 lifecycle magrittr pillar purrr rlang stringr tibble vctrs]; }; superpc = derive2 { name="superpc"; version="1.12"; sha256="0n68qafsww00q0wx37ms3rimrlhbp085ywvv2k5vw951j4z8ivfb"; depends=[survival]; }; supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; }; @@ -17297,7 +17411,6 @@ in with self; { survELtest = derive2 { name="survELtest"; version="2.0.1"; sha256="03jnj88z45iw9v1628bz99608q2jwbqw6cfsvqal2jj4392fz428"; depends=[Iso nloptr plyr survival]; }; survHE = derive2 { name="survHE"; version="1.1.2"; sha256="17hdhwkzyrkk4ijyscnv9644iinxvc566n84zq2490hfvlsk6nql"; depends=[BH dplyr flexsurv ggplot2 Rcpp RcppEigen rms rstan StanHeaders tibble xlsx]; }; survIDINRI = derive2 { name="survIDINRI"; version="1.1-2"; sha256="1cl2dlxya3aqhmj7gwk5s5wfdrk5in8if04hm0bjg4ivcrw4m9r6"; depends=[survC1 survival]; }; - survJamda = derive2 { name="survJamda"; version="1.1.4"; sha256="14ly1g548ysm8jgsyrhj12zmd6i2lca7rsgby3jbwikyqyk1mx5q"; depends=[ecodist survcomp survival survivalROC survJamda_data]; }; survJamda_data = derive2 { name="survJamda.data"; version="1.0.2"; sha256="0a010v2ar48i5m0jiqjvdyqm93ckfgfmcmym9a02h0rclnizd75r"; depends=[]; }; survMisc = derive2 { name="survMisc"; version="0.5.6"; sha256="014cf7sfndmib9jmj0p3h67sr750k2pvw7m865zwdpvlqddi44fr"; depends=[data_table ggplot2 gridExtra km_ci KMsurv knitr survival xtable zoo]; }; survParamSim = derive2 { name="survParamSim"; version="0.1.6"; sha256="1dmxvdz1pp6k9rpln8w1pq1bkjmjx2jhym526c9bkl48xnla1nbw"; depends=[broom dplyr forcats ggplot2 lifecycle magrittr mvtnorm purrr rlang survival tibble tidyr]; }; @@ -17310,8 +17423,8 @@ in with self; { survSens = derive2 { name="survSens"; version="0.1.0"; sha256="1s4s5l31yps93s2zdxpidkdg8kmmwj6vb3zfndmnxvc07arwhvbv"; depends=[directlabels ggplot2 survival]; }; survSpearman = derive2 { name="survSpearman"; version="1.0.1"; sha256="1b6nj2ikf931926a47a441icbrfjcadwxxnkc35c9yz8nw1kn1ii"; depends=[]; }; surveil = derive2 { name="surveil"; version="0.2.1"; sha256="1b7nwp3rmvbnaw6l2pjhfia864cirpfhn2smib5c4zl2h9282rjk"; depends=[BH dplyr ggdist ggplot2 gridExtra Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidybayes tidyr]; }; - surveillance = derive2 { name="surveillance"; version="1.20.1"; sha256="0yz7jmavgybaxrhi6hczppk7j3im250994w59xn2nm5w2ll5i87z"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat_geom xtable]; }; - survex = derive2 { name="survex"; version="0.1.1"; sha256="1ppjdnlprf2kqhlsclmx1qvyps29v772nx47f49khasm9am9pk9b"; depends=[DALEX ggplot2 gridExtra ingredients pec survival]; }; + surveillance = derive2 { name="surveillance"; version="1.20.3"; sha256="0r6vx40kzw3fcw44vd5cj2bd1vcc0j1q9khmwrmp52riyc8xmzip"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat_geom xtable]; }; + survex = derive2 { name="survex"; version="0.2.2"; sha256="1ch3q44rwilbw52s50yfzi98q3s8r0a660z6v8w16i71s2yfb90g"; depends=[DALEX ggplot2 patchwork pec survival]; }; survexp_fr = derive2 { name="survexp.fr"; version="1.1"; sha256="0ci65w3w06kwab98q9gb7nb7smq9r25qfibkgfilsg1i5li6p9h5"; depends=[survival WriteXLS]; }; survey = derive2 { name="survey"; version="4.1-1"; sha256="0ljsszybzri531q6xab04r6zq11vchfs7y0snjzk57m3g0b9ms05"; depends=[lattice Matrix minqa mitools numDeriv survival]; }; surveyCV = derive2 { name="surveyCV"; version="0.2.0"; sha256="183ybmfin4xmpsmssw7hskj1rgwpabpa616bzxlir27kygyrswbz"; depends=[magrittr survey]; }; @@ -17324,10 +17437,9 @@ in with self; { survival_svb = derive2 { name="survival.svb"; version="0.0-2"; sha256="13lipzn1cnkd5dcg8n69cdghycifiin3jnjvgzsv0g60l1jk0lmp"; depends=[glmnet Rcpp RcppEigen survival]; }; survival666 = derive2 { name="survival666"; version="0.5"; sha256="11vs546lrbxnhpxjmwxhh2hnp6kwcf4hzgigi3x9525hr8n9cy01"; depends=[ggplot2 survival survminer]; }; survivalAnalysis = derive2 { name="survivalAnalysis"; version="0.3.0"; sha256="0s4cihmjhg94zcbvr7c1pxdjyc0rpbqlw1gni5xkdhqp4lnqmygf"; depends=[cowplot dplyr forcats ggplot2 gridExtra magrittr purrr rlang scales stringr survival survminer tibble tidyr tidytidbits]; }; - survivalMPL = derive2 { name="survivalMPL"; version="0.2-1"; sha256="1rskhawhpkzi3laq452kgr1740p6998z7c7p95f2023ymkdm4rxv"; depends=[MASS survival]; }; + survivalMPL = derive2 { name="survivalMPL"; version="0.2-3"; sha256="1dxn9s68f545chqg1kfdys0gr419w259b1156g92mql899fm77sq"; depends=[MASS survival]; }; survivalMPLdc = derive2 { name="survivalMPLdc"; version="0.1.1"; sha256="1wqlzpwm1p7nq19l3d7c93zv6fnn0b1w24kak9zwsgyhar3f5lv9"; depends=[copula matrixcalc splines2 survival]; }; - survivalREC = derive2 { name="survivalREC"; version="1.0"; sha256="1c4qvk2qd5ffn4kfkglwn3iyisnd2y0hzzn92c57vb94d4h057hx"; depends=[KernSmooth survival]; }; - survivalROC = derive2 { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; }; + survivalROC = derive2 { name="survivalROC"; version="1.0.3.1"; sha256="0p6irjs8a9xxgxwax0y9fzapcib237if3iy8g6lzv793mzmsyx41"; depends=[]; }; survivalmodels = derive2 { name="survivalmodels"; version="0.1.13"; sha256="0d5bfmvfwf3i1iim5cjrqq5vlja92znpzv1csrk488rb582zaza7"; depends=[Rcpp]; }; survivalsvm = derive2 { name="survivalsvm"; version="0.0.5"; sha256="1b4hrdrqq1z0kfn8vpdwg54388m25df2s6w9i574x3mkxkmkjkga"; depends=[Hmisc kernlab Matrix pracma quadprog survival]; }; survivoR = derive2 { name="survivoR"; version="2.0.1"; sha256="120li3dnbvsvbs54s7vmz9hhcszygz4d2famba3pv343v89l345b"; depends=[ggpath ggplot2 glue magrittr prismatic stringr tidyr]; }; @@ -17350,17 +17462,16 @@ in with self; { svTools = derive2 { name="svTools"; version="0.9-5"; sha256="040wr8cr2p35x6pr515bprmsw8ysajx4df5f2njz3ily61xf9szi"; depends=[codetools svMisc]; }; svUnit = derive2 { name="svUnit"; version="1.0.6"; sha256="08nmlbdrmmz04ira30721l99i74w07w2avdr4pypswf2sq1nqgi6"; depends=[]; }; svWidgets = derive2 { name="svWidgets"; version="0.9-45"; sha256="08cpsy4abypjnv33arsgxk5i0gpdvdzj60wa1b22ca1n7d35mc80"; depends=[svMisc]; }; - svars = derive2 { name="svars"; version="1.3.9"; sha256="1i9wnfrgr9x6qfqhl9bc4wiz4wxmzjfcmg7wvy3zjrfszmibaf78"; depends=[clue copula DEoptim expm ggplot2 pbapply Rcpp RcppArmadillo reshape2 steadyICA strucchange vars zoo]; }; svd = derive2 { name="svd"; version="0.5.2"; sha256="0rz0alvj1aza7dncvc948s5kmjvggy8drr08hi5fz1q4s1znwn0g"; depends=[]; }; svenssonm = derive2 { name="svenssonm"; version="0.1.0"; sha256="0pvay9vfrcafaq270pq6glp2b74zdfgldksl13cwdb0wk7qx7731"; depends=[]; }; svgPanZoom = derive2 { name="svgPanZoom"; version="0.3.4"; sha256="1iglgwbyxf5q4716h9ba2cfmxh1qq16zwy54krnawg4580v8ydh2"; depends=[htmlwidgets]; }; - svgViewR = derive2 { name="svgViewR"; version="1.4.1"; sha256="0xppvrfl7q3viahvwvmn498wli74ldwijapf6n432gvc4phmy7wi"; depends=[Rcpp rjson Rook]; }; + svgViewR = derive2 { name="svgViewR"; version="1.4.2"; sha256="0xlz86knvxxh96yr1z3px3lm0myaq6csqig11g8rrdg46lxnih3n"; depends=[Rcpp rjson]; }; svglite = derive2 { name="svglite"; version="2.1.0"; sha256="16wwhfmp9agdz9azslgd8qs77fllhdp6p0m304qfh2p8qy8gah5d"; depends=[cpp11 systemfonts]; }; svgtools = derive2 { name="svgtools"; version="1.1.0"; sha256="1ipwj3qw8c62381b6yf5mazhg2a3ssddijqrq3bac57i8i6m8az1"; depends=[magick rsvg stringr xml2]; }; svines = derive2 { name="svines"; version="0.1.4"; sha256="1piin3nn0z5k9gilcq4lcqj86dqlfm9xqp87cslwypkfkkhn2aia"; depends=[assertthat BH fGarch Rcpp RcppEigen RcppThread rvinecopulib univariateML wdm]; }; svmpath = derive2 { name="svmpath"; version="0.970"; sha256="19b5hfqqsh072l5mbkafm5pjd6qhyj20qd2vq6zl5jjmc45r72w1"; depends=[kernlab]; }; svplots = derive2 { name="svplots"; version="0.1.0"; sha256="0fa3mnsdaz85dy7rr6w454z516simj1zrf08sfbm05rp6jr3c7ws"; depends=[ggplot2]; }; - svrep = derive2 { name="svrep"; version="0.3.0"; sha256="104mwkappywssmcfygvxrcfsi4m7jhyak10z7c78if4f7v3h3mfa"; depends=[survey]; }; + svrep = derive2 { name="svrep"; version="0.4.0"; sha256="04mvhmkhavz1a96y5r8sr8fc8cyxi9hq0cbrsilfdpy096dkksgc"; depends=[mvtnorm survey]; }; svrpath = derive2 { name="svrpath"; version="0.1.2"; sha256="18h40555jmqpbsnhlwkvc5fl7d0r2bgscdv8amjvhjxmx9y952a2"; depends=[quadprog svmpath]; }; svs = derive2 { name="svs"; version="3.0.0"; sha256="1jn3dbaqpgydkwf9y7hq97nva26vvrpl9zmw2bw4ky1qgzgz1ypb"; depends=[gtools Matrix]; }; svyVGAM = derive2 { name="svyVGAM"; version="1.1"; sha256="0y5bwp961g9z4p18igbvbh2wrzpl3ivipi305qny7a4rlpbxcfph"; depends=[survey VGAM]; }; @@ -17374,7 +17485,7 @@ in with self; { swatches = derive2 { name="swatches"; version="0.5.0"; sha256="1kivscgka8gn44rjj0s5sjan1s04znnyn0nd37a74zaik0hm8zs0"; depends=[colorspace httr pack stringr xml2]; }; swdft = derive2 { name="swdft"; version="1.0.0"; sha256="0529rw8nsl48hwiy741alvrzg5d5q1nhnjshrsfwchm5kdv0igva"; depends=[]; }; swdpwr = derive2 { name="swdpwr"; version="1.7"; sha256="0mljayrs629d0pxbd9lzzplvs31i33fqb0bfb01ryvwyv0ckwjx9"; depends=[spatstat_random]; }; - sweater = derive2 { name="sweater"; version="0.1.6"; sha256="0ij9mryxl9cjl4yxycn8yxp1qvj5s897h3ay5zz6j4cnpm65s7hv"; depends=[cli combinat data_table LiblineaR proxy purrr quanteda Rcpp]; }; + sweater = derive2 { name="sweater"; version="0.1.7"; sha256="03fq3vbcvbv8fwdp6smxyzb5gj8qp03qf88l99f2na9bax302sr3"; depends=[cli combinat data_table LiblineaR proxy purrr quanteda Rcpp]; }; sweep = derive2 { name="sweep"; version="0.2.3"; sha256="1705mcp9p5h50ifqjjwx61z5wl5izv889nxcgdkx1i0dlcr61l2a"; depends=[broom dplyr forecast lubridate rlang tibble tidyr timetk]; }; sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.2"; sha256="0zzjvwd60w9b5ybsb72aqa42sx6al4ymr591j3zryxgpl6rms5rh"; depends=[checkmate lubridate stringr]; }; swephR = derive2 { name="swephR"; version="0.3.0"; sha256="0fk5wih3i5vpkcc9y1n30xwc1hyqgfgnad9jkdgdx0m31pn1y9j5"; depends=[Rcpp]; }; @@ -17383,6 +17494,7 @@ in with self; { swfscMisc = derive2 { name="swfscMisc"; version="1.6"; sha256="1nsr4n4dqm2jhmf3z2yg9x63x394cank70i41zrp2m0sd9wqprgk"; depends=[dplyr ggplot2 ggrepel HDInterval kknn magrittr mapdata maps rlang sf spatstat_geom tibble tidyr]; }; swgee = derive2 { name="swgee"; version="1.4"; sha256="1a6zr4nkpj52b0rk01qbwzi8y0c798wlxzw69wyyv576k148rgfq"; depends=[gee geepack mvtnorm]; }; swimplot = derive2 { name="swimplot"; version="1.2.0"; sha256="02w1l67hvz8gha8gcqxcvcr8g2azidn6bvw76h3k75p9rvq8sgpp"; depends=[dplyr ggplot2 tidyr]; }; + swipeR = derive2 { name="swipeR"; version="0.1.0"; sha256="15n4kgiq1v2kjdkcimi0cs1psj0224598px1yw2xhlsjvb6x6p1f"; depends=[htmltools htmlwidgets]; }; swirl = derive2 { name="swirl"; version="2.4.5"; sha256="0cqyn2rnqfkb2wza4zdr1kcms5l0igbq79xh5i7765agdday2z9w"; depends=[digest httr RCurl stringr testthat yaml]; }; swirlify = derive2 { name="swirlify"; version="0.5.3"; sha256="1bpg6yz2adgspjlwsf2q83j1bq0iyvp9938smgc41861nsclngwr"; depends=[base64enc readr rmarkdown shiny shinyAce stringr swirl whisker yaml]; }; swissMrP = derive2 { name="swissMrP"; version="0.62"; sha256="1vy6h6c4v49zlsli77ilj4df8cfh67rqmki71v6j1aqw6kf3b649"; depends=[arm blme lme4 maptools sp]; }; @@ -17392,10 +17504,7 @@ in with self; { switchr = derive2 { name="switchr"; version="0.14.5"; sha256="1fxn75kgnmq9q4jic4jrqvljylwv9fa25nbhyqm4vmlx5wvissgp"; depends=[RCurl RJSONIO]; }; switchrGist = derive2 { name="switchrGist"; version="0.2.5"; sha256="0ywx7sihh9q74mn0kvdcdflnks0cfybrgy1b5bvmn6ygxb3s605v"; depends=[gistr httpuv RJSONIO switchr]; }; swmmr = derive2 { name="swmmr"; version="0.9.1"; sha256="140sx0y00ngxsyn7n1l0aay7vk2jk8hf81aiwh46k761cpc5y28d"; depends=[dplyr purrr Rcpp readr tibble tidyr xts zoo]; }; - sybil = derive2 { name="sybil"; version="2.2.0"; sha256="05ccq2m4z6akslymdm2vd3x99pi9z0ha1xcnhwvwcvibhqn9hmd5"; depends=[lattice Matrix]; }; - sybilDynFBA = derive2 { name="sybilDynFBA"; version="1.0.2"; sha256="0351qlvyynygjf43q93gkqzzaff3v6gynvbks1ix1mank3afn226"; depends=[sybil]; }; - sybilcycleFreeFlux = derive2 { name="sybilcycleFreeFlux"; version="2.0.2"; sha256="0s8yqzn7llzby5v1p7is7qv0m8dzwf14r3m32slf898nxrs131xr"; depends=[MASS Matrix sybil]; }; - sylcount = derive2 { name="sylcount"; version="0.2-4"; sha256="1qwxag92bpyi5sjr4373divw5zfgzvj2ji99ilcssnqwi46c4w77"; depends=[]; }; + sylcount = derive2 { name="sylcount"; version="0.2-5"; sha256="0934vic6mdrgpralrfvlv7y83kc1h7df7jm37spapy370mzq50lp"; depends=[]; }; syllabifyr = derive2 { name="syllabifyr"; version="0.1.1"; sha256="1z61afxx2bm37hxvv1fl3x7ibhkp3h1ivl3k9prqzsaw4j592vfx"; depends=[dplyr purrr stringr tibble tidyr]; }; sylly = derive2 { name="sylly"; version="0.1-6"; sha256="0f03k9d15fkym14y94jb7rkh228blc76jlm7pk229b44hcbh3mmm"; depends=[]; }; sylly_en = derive2 { name="sylly.en"; version="0.1-3"; sha256="0jw48qin172vv7skcpvcpi9wzgav5l9afzb09hhgcxvivbz6dl93"; depends=[sylly]; }; @@ -17406,7 +17515,6 @@ in with self; { symengine = derive2 { name="symengine"; version="0.2.2"; sha256="1wjw6fbphkxrha859s27rvzjp0niysssicaamw9sm8895j8k5lfk"; depends=[Rcpp]; }; symmetry = derive2 { name="symmetry"; version="0.2.2"; sha256="1h0zmmmlxd9xjfmp1lxb7rgmn5xq5rlspqrjw4nbgzw0vmdlm5gn"; depends=[Rcpp RcppArmadillo Rdpack]; }; symmoments = derive2 { name="symmoments"; version="1.2.1"; sha256="0wl68nsvydfhlbyaj54alj31dphqigyp1s4h2xdapxj4zvwf2sws"; depends=[combinat cubature multipol mvtnorm]; }; - symphony = derive2 { name="symphony"; version="0.1.0"; sha256="0pwl9ahiv0xxc7j6448cja77fvcng28gdwhhr1z0qmhjsdcxadxq"; depends=[class data_table dplyr ggplot2 ggrastr ggrepel harmony irlba magrittr Matrix purrr RANN RColorBrewer Rcpp RcppArmadillo rlang tibble tidyr uwot]; }; syn = derive2 { name="syn"; version="0.1.0"; sha256="12apdjbsazwfxizsw4dj0y3vkdjmki8dzpyv3bi9gnhpysdd1jzx"; depends=[]; }; synchronicity = derive2 { name="synchronicity"; version="1.3.5"; sha256="1kgsk64aifjm3mfj102y3va7x1abypq2zi0cqbnjhl8fqyzp69hx"; depends=[BH bigmemory_sri Rcpp uuid]; }; synchrony = derive2 { name="synchrony"; version="0.3.8"; sha256="1zpxg4dkxnvafiyp0j00wig5ymj10bzfg2376x56rzpnabhg57hi"; depends=[]; }; @@ -17440,7 +17548,7 @@ in with self; { table1 = derive2 { name="table1"; version="1.4.2"; sha256="1cw85nj6w9fk66wjbyz08ya6g027cfj3brb0sx7ar0n7zyc8rhb4"; depends=[Formula htmltools knitr yaml]; }; table1xls = derive2 { name="table1xls"; version="0.4.0"; sha256="0ixbshbp9hkcg12hj32vgb5bp0pj4rbc3i6g1xdg2zhqp7zanics"; depends=[XLConnect]; }; tableExtra = derive2 { name="tableExtra"; version="1.0.1"; sha256="1rbcxd3rjhvcpayj6d7mh30vkbc7g4mv4qa7552xz3x1wny0n4mm"; depends=[gtable]; }; - tableHTML = derive2 { name="tableHTML"; version="2.1.0"; sha256="01bffjqi2qs66w67l5nc0imqdcaf4cky930srkd2wmvvawv85kwc"; depends=[htmltools jpeg magrittr png shiny webshot]; }; + tableHTML = derive2 { name="tableHTML"; version="2.1.1"; sha256="0xqvk4smc8z6l4vpg39y1rxkx22spx7nvdsvp6xq6x7pmbsl0m8m"; depends=[htmltools jpeg magrittr png shiny webshot]; }; tableMatrix = derive2 { name="tableMatrix"; version="0.82.0"; sha256="1sskijhbqakamrk2rv7v5zpjsdi8jw0jl2z96l0vhsvsiq0cz1c8"; depends=[data_table]; }; tablecompare = derive2 { name="tablecompare"; version="0.1.0"; sha256="0cf557yi0h2y4idk8qwv0gk468pn0fhyndiy2jx28gdsz33h5p3a"; depends=[data_table glue magrittr purrr rlang tidyselect]; }; tabledown = derive2 { name="tabledown"; version="0.0.3"; sha256="0pvd9i7ycsarsp7m9hdss86vx0mdrv57iqxk8nyqixfdvrwb48pv"; depends=[data_table dplyr ggplot2 lavaan magrittr mirt MOTE psych tibble tidyselect]; }; @@ -17452,10 +17560,11 @@ in with self; { tablesgg = derive2 { name="tablesgg"; version="0.8-1"; sha256="0vkl9386qnalr5d0libqs2ihszggs0qyx6ffyjn8j8ab3kczzxhr"; depends=[ggplot2 tables]; }; tablet = derive2 { name="tablet"; version="0.5.8"; sha256="0c5gjrvr6r4vqxh2dc7v2jads48wwijvbzadxa92qzfsmxw3p382"; depends=[dplyr DT fs kableExtra magrittr rlang spork tidyr]; }; tabnet = derive2 { name="tabnet"; version="0.3.0"; sha256="04m8bg1glnhxb2pjcxnwlcwzbxvk0bskz00dkd4lyvgsq74xwmvi"; depends=[coro glue hardhat magrittr progress rlang tibble torch vctrs]; }; + taboolaR = derive2 { name="taboolaR"; version="0.1.0"; sha256="1nv189d6sjjrhc1nr7xhdf22gfh1z93rlcgm2vk7kcs43avm8fwb"; depends=[jsonlite]; }; tabr = derive2 { name="tabr"; version="0.4.5"; sha256="1nkzbqy9nb6pd895glld009vmry5rnhd7h9q31s8xh97kwlwk9c2"; depends=[crayon dplyr ggplot2 magrittr purrr tibble tidyr]; }; tabshiftr = derive2 { name="tabshiftr"; version="0.4.0"; sha256="04y910lcsim551za639q80laalhncc4lxcz31y3plilnlavxjyb1"; depends=[checkmate crayon dplyr magrittr purrr rlang stringr testthat tibble tidyr tidyselect]; }; tabuSearch = derive2 { name="tabuSearch"; version="1.1.1"; sha256="0396a8hla508na1hmyyhfbl8w10dbg810cln2xyhhvxi7rr223dj"; depends=[]; }; - tabula = derive2 { name="tabula"; version="1.8.0"; sha256="0nqm1100xgnr74zifscqw1hfqi4lz73fsm5xm5kbmqlf94mvk45x"; depends=[arkhe boot ggplot2 kairos rlang]; }; + tabula = derive2 { name="tabula"; version="2.0.0"; sha256="13mg0cacwx606942n40icr83yzq3px50wqfpxync0zraf6kr4zpp"; depends=[arkhe ggplot2 rlang]; }; tabularMLC = derive2 { name="tabularMLC"; version="0.0.3"; sha256="1gppzbf780ci4vrvy7rd3xa0bvwxca5f05a9xk194xv913vyd440"; depends=[Rcpp RcppArmadillo]; }; tabularaster = derive2 { name="tabularaster"; version="0.7.1"; sha256="0b8jl3bf7q0302mlnqh720qs7rllkgyg127n1h25snb34k1wc3pm"; depends=[dplyr fasterize magrittr raster silicate spatstat_geom tibble]; }; tabularmaps = derive2 { name="tabularmaps"; version="0.1.0"; sha256="07i76n2fpl2ma6jl3zdbay0zmmaaxrxhv1368xm2d575br42nri4"; depends=[ggforce ggplot2 purrr rlang]; }; @@ -17471,14 +17580,13 @@ in with self; { taipan = derive2 { name="taipan"; version="0.1.2"; sha256="192sy5pgq74vs31p7jfn6svdzf9mk9ybppzhp1rlki1bagmm5f1r"; depends=[shiny]; }; takos = derive2 { name="takos"; version="0.2.0"; sha256="09w9lkqhxdb26fvrsb8n16601kqpr2smplipx3lj6cdgbyhb1hqz"; depends=[baseline broom colorRamps data_table deSolve devEMF MASS minpack_lm pracma segmented sfsmisc smoother]; }; tanaka = derive2 { name="tanaka"; version="0.3.0"; sha256="0lbwqz6p7kmxadjymqpfmcvz4l6gzimbk94778w4vzh9iay7dqi7"; depends=[mapiso sf terra]; }; - tangram = derive2 { name="tangram"; version="0.8.1"; sha256="1vmh3wk4vk25x6i5z9wrxdlhald406a6rfw1pivv7xrw659kaznv"; depends=[base64enc digest htmltools knitr magrittr R6 stringi stringr]; }; tangram_pipe = derive2 { name="tangram.pipe"; version="1.1.2"; sha256="0v86xn5rvr6c74cqhiwfxgfb4mizqlf5bqc51870na28i2ariaap"; depends=[dplyr]; }; tapkee = derive2 { name="tapkee"; version="1.2"; sha256="1xgz2cv5jb1hdnl8y8zs4x6p1dk1vv8zbs4wfsj61gpfyf9gkh4f"; depends=[]; }; tapnet = derive2 { name="tapnet"; version="0.3"; sha256="1fjg98m19iwbzijs5b5l4ssrbx1shv1hmgn1166cbni9y76m44sh"; depends=[ape bipartite MPSEM phytools vegan]; }; - tarchetypes = derive2 { name="tarchetypes"; version="0.7.1"; sha256="1k654w5v8vc8sn0d8qj0xbdrzaqdnngff9an9mb9rjq3jyc2k2nn"; depends=[digest dplyr fs rlang targets tibble tidyselect vctrs withr]; }; - tardis = derive2 { name="tardis"; version="0.1.3"; sha256="0g4gam2gip6h7lim4pcamqf430m1pk4sy5spri3ysl0l8mdsxg60"; depends=[cpp11 dplyr magrittr purrr stringi stringr tidyr]; }; + tarchetypes = derive2 { name="tarchetypes"; version="0.7.3"; sha256="03v2w9jk9bryrlcmzpa1y72k0kp4v0fw8mc1w1gl1kggqbkd0936"; depends=[digest dplyr fs furrr rlang targets tibble tidyselect vctrs withr]; }; + tardis = derive2 { name="tardis"; version="0.1.4"; sha256="1hfqnszhly6cfi7aii3v9nnrj3md389bflvf3igixrn4wb7mfyi5"; depends=[cpp11 dplyr magrittr purrr rlang stringi stringr tidyr]; }; targeted = derive2 { name="targeted"; version="0.3"; sha256="0h05h8pgjjab5clv501m9b2fcycspj0dc7zs72lwp15al2rikmzg"; depends=[data_table digest futile_logger future_apply lava mets optimx progressr R6 Rcpp RcppArmadillo survival]; }; - targets = derive2 { name="targets"; version="0.13.5"; sha256="08sdbl6366nqalrzx8cc0kmgkjlq2sky25bq0bziyqsy9slxlld6"; depends=[base64url callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs withr yaml]; }; + targets = derive2 { name="targets"; version="0.14.1"; sha256="1zf8dapdy1ds59282vy3b1s6q0ra6a8v1llp1g6xaijih4pcl3r8"; depends=[base64url callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs withr yaml]; }; tashu = derive2 { name="tashu"; version="0.1.1"; sha256="0rirjalridr79a7j3qz80l2vp6m8paqr97ac241b58756k7nr5j7"; depends=[dplyr drat ggplot2 lubridate plyr randomForest RColorBrewer reshape2]; }; tastypie = derive2 { name="tastypie"; version="0.1.0"; sha256="15ivl0rvnp1j09axk0jaf1wip5cjbnvfmx0crhqqd5y27mfa2hzd"; depends=[dplyr fmsb ggplot2 packcircles RColorBrewer scales shadowtext tibble]; }; tatest = derive2 { name="tatest"; version="1.0"; sha256="1yd9pdpdhxwpllnj5wxa7ly29qiw8qywx9lx0w3nizczlx35fgjy"; depends=[]; }; @@ -17494,7 +17602,7 @@ in with self; { taxonbridge = derive2 { name="taxonbridge"; version="1.2.2"; sha256="1ivks3bvwyn0ybvyz6dhsx7qxnlskf4icjkgsichdv4p24w5iwb9"; depends=[dplyr ggplot2 purrr rje stringr vroom withr]; }; taxonomizr = derive2 { name="taxonomizr"; version="0.9.3"; sha256="03rc47pf85sfxa3zdjfcixsagcjbknk9jcsi3a56lz1d0178gb9n"; depends=[curl data_table R_utils RSQLite]; }; tayloRswift = derive2 { name="tayloRswift"; version="0.1.0"; sha256="1gr179hzqxih49v214dqawfhsbsahhyj1lbj77vqv00zq1siigpl"; depends=[]; }; - taylor = derive2 { name="taylor"; version="1.0.0"; sha256="0w1r3vy6c03h14cxmxf938rmgmxnnhdfavivp6749xxd2qdca997"; depends=[crayon ggplot2 glue lifecycle rlang scales tibble vctrs]; }; + taylor = derive2 { name="taylor"; version="2.0.0"; sha256="1zmih8gkkcfpydxxc4dfg3ypqs4qwbanfhckmjl9s4wl99k8q9mi"; depends=[crayon ggplot2 glue lifecycle rlang scales tibble vctrs]; }; tbd = derive2 { name="tbd"; version="0.1.0"; sha256="1wmfy3p82gckhfsslxzapryfygmircii7x24j6ysfyx52gy8iwf5"; depends=[numDeriv]; }; tbl2xts = derive2 { name="tbl2xts"; version="1.0.4"; sha256="1h54yhwbmlzgii202dcrz336d790374p213f1ba6rlm5syad88v9"; depends=[dplyr rlang tibble xts zoo]; }; tbm = derive2 { name="tbm"; version="0.3-5"; sha256="0qq6zjz37j31jrw0lxsf6vgxwhs8swkqg48jwc320vpz1qjqj7xv"; depends=[basefun coneproj mboost mlt sandwich variables]; }; @@ -17507,7 +17615,7 @@ in with self; { tcl = derive2 { name="tcl"; version="0.1.1"; sha256="01klrzvw7vc0iwqpmcikgqm8jx3g7536r5f8gb6vwcik912maxnl"; depends=[colorspace eRm lattice ltm MASS Matrix numDeriv psych psychotools]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; tclust = derive2 { name="tclust"; version="1.5-2"; sha256="12vg9q35srddjidrn3q955xybn6ldraya35s4955ypj61arp89j9"; depends=[]; }; - tcpl = derive2 { name="tcpl"; version="3.0.0"; sha256="1d6536wdqjy7j9v3zcg1piga6gnjkrjslrn2zw30nx195cwc8ysj"; depends=[data_table DBI dplyr ggplot2 gridExtra numDeriv plotly RColorBrewer RMariaDB sqldf stringr tcplfit2 tidyr]; }; + tcpl = derive2 { name="tcpl"; version="3.0.1"; sha256="1xsw532xdf4xksrggsszwbh7rj818hvi9xmndhdhdk6wq6bg7xh4"; depends=[data_table DBI dplyr ggplot2 gridExtra numDeriv plotly RColorBrewer RMariaDB sqldf stringr tcplfit2 tidyr]; }; tcplfit2 = derive2 { name="tcplfit2"; version="0.1.3"; sha256="1y69z27mgphcj5qkhlpgv0as59aralimf7mbfrdz5n6nkqfj5krr"; depends=[future future_apply numDeriv RColorBrewer stringr]; }; tcsinvest = derive2 { name="tcsinvest"; version="0.1.1"; sha256="1harmb5ni70k241aq1vww5w7fmjqmlwd6nfma2xa44f3hj7nrf52"; depends=[data_table httr jsonlite websocket]; }; td = derive2 { name="td"; version="0.0.6"; sha256="1zycwnl7n03jw76n8qrk2zhgnakj6npid25pflj6dnmbjc47ih32"; depends=[RcppSimdJson]; }; @@ -17524,6 +17632,7 @@ in with self; { teamcolors = derive2 { name="teamcolors"; version="0.0.4"; sha256="0mqrjnkpxzv7armgbl9nwz42pjb9l94yml5lp41rhjj9414b2729"; depends=[dplyr ggplot2 tibble tidyr]; }; teamr = derive2 { name="teamr"; version="0.0.1"; sha256="01gngws8lf093598wlzrv4ls74avsli6ij33v1plqgc0znyaw4s2"; depends=[httr jsonlite R6]; }; teda = derive2 { name="teda"; version="0.1.1"; sha256="0yx469jbkw9cgx73zi5mkykrdn16kn01zh524x9411314aa32avx"; depends=[]; }; + tehtuner = derive2 { name="tehtuner"; version="0.1.1"; sha256="1dr3xrhwszv75w8iz7yy44a7kxac5n1dirjhjfqgvjz529m8ycqb"; depends=[earth glmnet party randomForestSRC Rdpack rpart stringr SuperLearner]; }; teigen = derive2 { name="teigen"; version="2.2.2"; sha256="1k5k3lj6av5pyx130w1j7avd0jdmm12ryc71mi5mq49sp95ndl4v"; depends=[]; }; telefit = derive2 { name="telefit"; version="1.0.3"; sha256="0z6dr4ni00dyagbkzr3c7l4h2g23w3bfj99a9755vmrzyy6r45iq"; depends=[abind coda cowplot dplyr fields foreach ggplot2 gtable itertools mvtnorm raster Rcpp RcppArmadillo RcppEigen reshape2 scales scoringRules sp stringr]; }; telegram = derive2 { name="telegram"; version="0.6.0"; sha256="02wwa115f0vz2d9y4nf01397hjkpc3cv2gdl47snrajrm41gji7y"; depends=[curl httr jsonlite R6]; }; @@ -17540,22 +17649,23 @@ in with self; { tensorA = derive2 { name="tensorA"; version="0.36.2"; sha256="19wwh654qlja4z1n7afjpzsrrm53p8ddysa2vra5mdnkddb4g2cf"; depends=[]; }; tensorBF = derive2 { name="tensorBF"; version="1.0.2"; sha256="1dw1a6xqcsl4isbzbfiplgqq5nak5n9ffzm23mzzmkh1r1a8kl1y"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.3.8"; sha256="1chgkdshjpxzy0cxkgjzpr5k4v2hyad1vchrxyqhsj9isfic2581"; depends=[abind fICA ggplot2 ICtest JADE Rcpp RcppArmadillo tensor tsBSS]; }; + tensorFun = derive2 { name="tensorFun"; version="0.1.1"; sha256="0ij3dshnj448scws6d2pdw2ik34hbhq9mksmllgy0g8l257a3x8d"; depends=[ClimProjDiags MASS psychTools]; }; tensorTS = derive2 { name="tensorTS"; version="1.0.0"; sha256="0nbks7djd4wggn33f39zc2zacz6z4dpvgk9fj9a90kcmyiw0rckl"; depends=[abind expm MASS Matrix pracma rTensor tensor]; }; tensorflow = derive2 { name="tensorflow"; version="2.9.0"; sha256="12c6ndxx4g6fqjakpzp9pgl29ghswhqyr6q9jahpk0cawizh2znj"; depends=[config processx reticulate rstudioapi tfautograph tfruns yaml]; }; tensorr = derive2 { name="tensorr"; version="0.1.1"; sha256="18xdvp328h96jn8y1iayxh7cyz2s8j5nn43nq18pyaxq271hkfyh"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; tensorregress = derive2 { name="tensorregress"; version="4.0"; sha256="0pb512v3gahgv3qc31i5v2jg8wixi6ps3p920sq5dgpfrig9hg2q"; depends=[MASS pracma speedglm]; }; tensorsparse = derive2 { name="tensorsparse"; version="3.0"; sha256="0xx003nh5bi87cbsqb7ikpcs4yhjhphh7pybzzas44qkwbn4fn1k"; depends=[]; }; tensr = derive2 { name="tensr"; version="1.0.1"; sha256="1z6b3ra7fgn88mxbhsq65x3frj5j7p17n119s9kbw7sg9y633vfx"; depends=[assertthat]; }; - tergm = derive2 { name="tergm"; version="4.1.0"; sha256="0l2a0j4bz4q101hqhcn2jnv5j4ny1cjcay2c8bcq58akifs3bzxb"; depends=[coda ergm MASS network networkDynamic nlme purrr robustbase statnet_common]; }; + tergm = derive2 { name="tergm"; version="4.1.1"; sha256="09axlhf5n2jwc84ih05ywz8addqfai7g1cdlzhsbmjnsn1d89kai"; depends=[coda ergm MASS network networkDynamic nlme purrr robustbase statnet_common]; }; tergmLite = derive2 { name="tergmLite"; version="2.6.1"; sha256="03dr3bfi5ywavfijkc6gmci8i1kmbsh26awhl7748mn9wcsgs2pc"; depends=[ergm network networkDynamic Rcpp statnet_common tergm tibble]; }; term = derive2 { name="term"; version="0.3.5"; sha256="1ig1hvyv18d1x19jmvkg66m6nn8kdlffj5hx70vzd4sxz68j2k0v"; depends=[chk extras lifecycle purrr rlang universals vctrs]; }; terminaldigits = derive2 { name="terminaldigits"; version="0.1.0"; sha256="0vj7pylr410wi59qj2313iximsyl0v9ffg7z9gcfg720g5zrvfkm"; depends=[discretefit Rcpp]; }; ternvis = derive2 { name="ternvis"; version="1.2"; sha256="057i6i3ygxrin0npc18gsg3dpdldzafyb5sr6lix5mhy6b09lkxf"; depends=[dichromat maps quadprog]; }; - terra = derive2 { name="terra"; version="1.6-17"; sha256="00mwigymvsqf7r3swbkdw8fwqzr05ddk84fhyhr16lfa4118z26v"; depends=[Rcpp]; }; + terra = derive2 { name="terra"; version="1.6-47"; sha256="13n6rxrrkn4wgcgq2kyyhn5nxw099hy9fbzxg78waxa6cxapwpmh"; depends=[Rcpp]; }; terrainmeshr = derive2 { name="terrainmeshr"; version="0.1.0"; sha256="1xab6wzq2izzdvsss1rlgp5m3cn45naxhymq6cglipj0fd792jbr"; depends=[Rcpp]; }; - terrainr = derive2 { name="terrainr"; version="0.7.1"; sha256="0marwkn3mzrrm8xghc3f2fnxgbcfvzq76lpac92gahhvfmxhjp39"; depends=[base64enc ggplot2 glue httr magick png raster rlang sf terra unifir units]; }; + terrainr = derive2 { name="terrainr"; version="0.7.2"; sha256="1w91vdn859m1rxg5av3gix5rff1wndrkkn13nvc1ygqgwd25hc76"; depends=[base64enc ggplot2 glue httr magick png raster rlang sf terra unifir units]; }; tessellation = derive2 { name="tessellation"; version="2.1.0"; sha256="0pbdf18pz1j18x7lsz306x87p0d339a0y1nacynsqly0706g1s3d"; depends=[cxhull english hash interp R6 randomcoloR rgl Rvcg scales sets]; }; - tesselle = derive2 { name="tesselle"; version="1.1.0"; sha256="11afr475gnaa0g2f0a2gx9zcsaqbfw5rfxy27f4pllccqapl6hys"; depends=[arkhe dimensio folio kairos khroma tabula]; }; + tesselle = derive2 { name="tesselle"; version="1.2.0"; sha256="1kbz26rinxwd8h3kazdalkb32l1hl623r9f3x072j857g2x9v5my"; depends=[arkhe dimensio folio kairos khroma tabula]; }; tesseract = derive2 { name="tesseract"; version="5.1.0"; sha256="1ynd665mbfklqahzkjfbl6ja1djybgcmc71dpg5dxxjc3ny7rbkd"; depends=[curl digest pdftools rappdirs Rcpp]; }; test2norm = derive2 { name="test2norm"; version="0.2.1"; sha256="1llzvdggjvc72qwkv9iiqxx7prj3hnr9bqpwsib4qmfpmmxsif37"; depends=[mfp]; }; testDriveR = derive2 { name="testDriveR"; version="0.5.2"; sha256="144bni3dg7bdmxnxyyal94j1nddqshgys9wfkdcc262n8y3v13i5"; depends=[]; }; @@ -17567,7 +17677,7 @@ in with self; { tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; }; testit = derive2 { name="testit"; version="0.13"; sha256="104dcxdmzgj340mwk4lpw1y6j1xc4rv4a2v09ckx3nvbmdl73m4h"; depends=[]; }; - testthat = derive2 { name="testthat"; version="3.1.5"; sha256="1z5pyp4cmyn8ms243zav5wfbwbh45zzq432m1g1xyv904sa6pxd8"; depends=[brio callr cli desc digest ellipsis evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; + testthat = derive2 { name="testthat"; version="3.1.6"; sha256="1bndjkwv6f9x3a0wklwnf7bymn655yhw6cmazb285hbmci0qrjx7"; depends=[brio callr cli desc digest ellipsis evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; testthis = derive2 { name="testthis"; version="1.1.1"; sha256="0csragn695698dpkr9d3md0g81bzpy5mybd0jik669q9cs8sdzh2"; depends=[assertthat devtools fs magrittr pkgload rprojroot stringi testthat usethis]; }; testtwice = derive2 { name="testtwice"; version="1.0.3"; sha256="06fr13ww2wqk753p0cnl1ldn3nqrvdfnz0lgkpldcn0xwiwjh2x2"; depends=[mvtnorm]; }; tetraclasse = derive2 { name="tetraclasse"; version="0.1.21"; sha256="1cl2cah0xi6x3rvvdy56iszai6rkbxc1w3x13v0l1z1nryff7c6a"; depends=[dplyr FactoMineR ggplot2 ggrepel magrittr reshape2 tibble tidyr]; }; @@ -17580,7 +17690,7 @@ in with self; { text2map = derive2 { name="text2map"; version="0.1.6"; sha256="1lqhk5dz7g4mc63644hbb60hwgzsyl75i8ckz354hvagnd84xwg1"; depends=[ClusterR doParallel dplyr fastmatch foreach igraph kit magrittr Matrix qgraph rlang rsvd stringi stringr text2vec tibble]; }; text2sdg = derive2 { name="text2sdg"; version="0.1.6"; sha256="0rnb44d5v7b90p78bwcg5zqz1xrfpr34ad6pgc49ll0pb9q9ijss"; depends=[corpustools dplyr ggplot2 lifecycle magrittr stringr tibble tidyr]; }; text2speech = derive2 { name="text2speech"; version="0.2.13"; sha256="0c0h4yfp1gzaf4snav84iy5m0fx8az0pw1h2s33239dxkwcff893"; depends=[aws_signature dplyr googleAuthR googleLanguageR httr knitr magrittr mscstts tuneR]; }; - text2vec = derive2 { name="text2vec"; version="0.6.2"; sha256="1as58w1hb6h0hpncwcr2nx9a8bj5fy6bfllx2a8ck8hal764iach"; depends=[data_table digest lgr Matrix mlapi R6 Rcpp rsparse stringi]; }; + text2vec = derive2 { name="text2vec"; version="0.6.3"; sha256="1hi7ydb7xkgbff4lwnnz1biyl8m90w16hn3x5rrzvscvm53sj4y7"; depends=[data_table digest lgr Matrix mlapi R6 Rcpp rsparse stringi]; }; textTinyR = derive2 { name="textTinyR"; version="1.1.7"; sha256="17c3vciqx2i0h0jkqsiva8kp6pwcrscwgyxf804sjvdbym0pwc7d"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; textTools = derive2 { name="textTools"; version="0.1.0"; sha256="1d9j1bj17ki169h4lmlz2b2c2m60q6b95prjscz346lc4vw5160a"; depends=[data_table]; }; textcat = derive2 { name="textcat"; version="1.0-7"; sha256="1m31alkzy13acgf4ahnzpbyazflhpmry369vqdvn5f86wcsls833"; depends=[slam tau]; }; @@ -17617,6 +17727,7 @@ in with self; { tfprobability = derive2 { name="tfprobability"; version="0.15.1"; sha256="0as8lciyh463x91gv290zzp9sjsrrvgcwiliyi9y5dp0qbj4505x"; depends=[keras magrittr reticulate tensorflow]; }; tframe = derive2 { name="tframe"; version="2015.12-1.1"; sha256="1yff22jzh1mp73zbz2mav6z8m42lylfjhb8dgxj4337fv3if3i13"; depends=[]; }; tframePlus = derive2 { name="tframePlus"; version="2022.3-1"; sha256="1axrvfigdmwmas0q3qlmk4m7jybqcssjgmyww2knp8jw7kp212vy"; depends=[tframe timeSeries]; }; + tfrmt = derive2 { name="tfrmt"; version="0.0.1"; sha256="1b23ylm7ad4yhcxsm1qgv9lk8nf9bivws0h2z9cxpnrcjc309sw6"; depends=[dplyr forcats ggplot2 gt magrittr purrr rlang stringi stringr tibble tidyr tidyselect]; }; tfruns = derive2 { name="tfruns"; version="1.5.1"; sha256="1xk7dl51xd1h54798xwycvxmn77jv80in61hanm36zk0024wpxg8"; depends=[base64enc config jsonlite magrittr reticulate rlang rstudioapi tidyselect whisker yaml]; }; tfse = derive2 { name="tfse"; version="0.5.0"; sha256="05q75xsiy955xwgchagk7l7725y6mylp5lj5284xm7y2xh197zp3"; depends=[dapr magrittr]; }; tgamtheme = derive2 { name="tgamtheme"; version="0.1.0"; sha256="1igv6vl3vqqx8pbvj5qr21cjphpizq3b5sjss359bhw2gy747npl"; depends=[ggplot2]; }; @@ -17625,11 +17736,11 @@ in with self; { tglkmeans = derive2 { name="tglkmeans"; version="0.3.5"; sha256="0ldbq2pjmvw8m698s9zvvk38qiysz44r6s8v9bs8i7i7vjpwj62y"; depends=[doFuture dplyr future ggplot2 magrittr plyr purrr Rcpp tgstat tibble]; }; tgp = derive2 { name="tgp"; version="2.4-20"; sha256="00yw8l05b49qg79gydcv4f4snl92jm7fyy3i5y6vgxcj6jl101g9"; depends=[maptree]; }; tgram = derive2 { name="tgram"; version="0.2-3"; sha256="0vlnry8drq3fqfy8dk50pcwcx9dj657kx6s19fs2b6acigkr4g7w"; depends=[zoo]; }; - tgstat = derive2 { name="tgstat"; version="2.3.18"; sha256="0bxg4x0m6a7i8ahpwmh79g60605q0z5q60wbajdzc4zc96k7hp8k"; depends=[]; }; + tgstat = derive2 { name="tgstat"; version="2.3.19"; sha256="0nms7wzm2mn04q91709z7c1r16kxkw566zv2qglvns5dri905bs7"; depends=[]; }; tgver = derive2 { name="tgver"; version="0.3.0"; sha256="1kw622xcjhca7k178q3wpmjyidjifvql9xpg2ai8842qhgz14bm0"; depends=[callr geojsonsf plumber]; }; thaipdf = derive2 { name="thaipdf"; version="0.1.2"; sha256="03h03bmw6q60jc80z14k7hpli0knhfbmhns0inbz0nhvisfzmsbq"; depends=[cli fs rmarkdown]; }; thankr = derive2 { name="thankr"; version="1.0.0"; sha256="089ikp85d5ia6a1qzmw8dkgcmz628cibmwfzcpk7m3ii8acxq91w"; depends=[]; }; - theft = derive2 { name="theft"; version="0.3.9.6"; sha256="14bynxl3asxh73g42wg3hylzc7fjqxnz1q8ss9fy8j99y3s3hpph"; depends=[broom caret dplyr fabletools feasts ggplot2 janitor plotly purrr R_matlab Rcatch22 reshape2 reticulate rlang Rtsne scales tibble tidyr tsfeatures tsibble]; }; + theft = derive2 { name="theft"; version="0.4.1.1"; sha256="11gpg044ypfnwvrb7y0fgm1ammh8w03yik8xb26kjax5xa74pcvl"; depends=[broom caret dplyr fabletools feasts ggplot2 janitor plotly purrr R_matlab Rcatch22 reshape2 reticulate rlang Rtsne scales tibble tidyr tsfeatures tsibble]; }; theiaR = derive2 { name="theiaR"; version="0.4.0"; sha256="07m532r67cil2ya2w9lfhycrm8n0ga0r3x7jwbp5jbd83hw4l1p6"; depends=[askpass httr R6 raster XML]; }; thematic = derive2 { name="thematic"; version="0.1.2.1"; sha256="1hr9373256n1rya3l2z2sqwfifypsh6wrs2s27aqchh9sm0blkmy"; depends=[farver ggplot2 rappdirs rlang rstudioapi scales]; }; themis = derive2 { name="themis"; version="1.0.0"; sha256="0ink3ixal4942w1sbqjdhxpl7j0aqvksyiiz9ddd72wk30cvpwaw"; depends=[dplyr generics glue gower hardhat lifecycle purrr RANN recipes rlang ROSE tibble withr]; }; @@ -17639,7 +17750,7 @@ in with self; { thgenetics = derive2 { name="thgenetics"; version="0.4-2"; sha256="1314gry3xs9v4jy13g08q16qy4ax3s0bc7d74gi0wbpkgdrk3lql"; depends=[]; }; thief = derive2 { name="thief"; version="0.3"; sha256="12ymkkisg5p0g1gmvlczhp4dc7mirjg55fqqmz2d90673vlg6rfq"; depends=[forecast ggplot2 hts]; }; thinkr = derive2 { name="thinkr"; version="0.16"; sha256="104n4g70fk209b721qchrbv95dwxzq6vvhz36asdk40kzzacdzp2"; depends=[assertthat cli devtools dplyr ggplot2 lazyeval lubridate magrittr officer rvg stringi stringr tidyr withr]; }; - this_path = derive2 { name="this.path"; version="1.0.1"; sha256="0bvz5sl2im9720068bglclwahv75pns2qck6306hyfvrzzga2sal"; depends=[]; }; + this_path = derive2 { name="this.path"; version="1.1.0"; sha256="0mzb8scdv1f0ppc2hcpkbwn89iqrvf3asncch974q1zfy8q36xbj"; depends=[]; }; thor = derive2 { name="thor"; version="1.1.2"; sha256="0r4kgzbydjb7z0j808g5zdkx5wmbqncqg453bqm4ylafpj5z79kv"; depends=[R6 storr]; }; thorn = derive2 { name="thorn"; version="0.2.0"; sha256="0sybjqwv9al5khkhhc7khbgr7n2vy6aggarh9n75mxpa8hn7j2qr"; depends=[htmlwidgets]; }; thredds = derive2 { name="thredds"; version="0.1-2"; sha256="0428j1c1zfc42kydsbnvpznwprq62nwxh41i7pf4873g3canmjkx"; depends=[httr magrittr R6 rlang xml2]; }; @@ -17654,11 +17765,13 @@ in with self; { thurstonianIRT = derive2 { name="thurstonianIRT"; version="0.12.1"; sha256="1qac1kg441x6fx3nxlhj1w1q7b3isivw6hzy7np3g1ics3kxpw8b"; depends=[BH dplyr knitr lavaan magrittr MplusAutomation mvtnorm Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; tibble = derive2 { name="tibble"; version="3.1.8"; sha256="1spdbk5s0wlipfq8jc08p2mk5fq2ql9hm8iwwlfzdlhqbl3hxwxc"; depends=[fansi lifecycle magrittr pillar pkgconfig rlang vctrs]; }; tibbletime = derive2 { name="tibbletime"; version="0.1.7"; sha256="0l2aaqzf087phyxblkskqfpica12bfama6wyvxkdgbiwmzf6lbzc"; depends=[assertthat dplyr glue hms lifecycle lubridate pillar purrr Rcpp rlang tibble vctrs zoo]; }; + tibblify = derive2 { name="tibblify"; version="0.3.0"; sha256="1hir7rb0zn9cz2yjfrg17is0ryzzxfxsan0sij0c0dh9v171cp0w"; depends=[cli lifecycle purrr rlang tibble tidyselect vctrs withr]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; tictoc = derive2 { name="tictoc"; version="1.1"; sha256="0ka7zd857xfqb5afn0psn0yzfv2qjb0ddxfyiq6aggbnla5qc3qj"; depends=[]; }; - tidyBdE = derive2 { name="tidyBdE"; version="0.3.0"; sha256="1h134amkmcz3k5yl73r818hp1z5fsmiiv6bkqcn3fpn4bi9rh58w"; depends=[dplyr ggplot2 readr scales tibble]; }; + tidyBdE = derive2 { name="tidyBdE"; version="0.3.1"; sha256="1c3c4yj95avjmnc11gn1dcbgmzz3kgmj5ahl4ip8vp3ap4ik3c89"; depends=[dplyr ggplot2 readr scales tibble tidyr]; }; tidyCDISC = derive2 { name="tidyCDISC"; version="0.1.0"; sha256="0x84vljzzahhc4a8r7cnahvh2vgbx1a68sr1vm48gckis271isj7"; depends=[cicerone config dplyr DT GGally ggcorrplot ggplot2 glue golem gt haven IDEAFilter plotly purrr rlang rmarkdown shiny shinyjs shinyWidgets sjlabelled stringr survival tidyr timevis tippy]; }; tidyCpp = derive2 { name="tidyCpp"; version="0.0.6"; sha256="1w6fr4q137ar6557a8x1jpmfmlsga59621jwq0sf37bnn535i4gw"; depends=[]; }; + tidyDisasters = derive2 { name="tidyDisasters"; version="0.1.1"; sha256="071hr4dmk5pq8m8b58b8zcz5kpgxnqw2l4rb2vkq1zhsrk9ynxmg"; depends=[]; }; tidyEmoji = derive2 { name="tidyEmoji"; version="0.1.0"; sha256="03amap4lik63nqdznncg8ymw74avmrhci36gy8ckwwskrn9gqw93"; depends=[dplyr emoji purrr stringr tibble tidyr]; }; tidyHeatmap = derive2 { name="tidyHeatmap"; version="1.8.1"; sha256="19gpp8p3ms60qzny26vx8h7x4zl495ynrfrvf1nndhm2njbx6i4m"; depends=[circlize ComplexHeatmap dendextend dplyr lifecycle magrittr patchwork purrr RColorBrewer rlang tibble tidyr viridis]; }; tidyLPA = derive2 { name="tidyLPA"; version="1.1.0"; sha256="1lyd8cx90j49bm65330i57jyimiid75c2pvnzk7dcp6mbmglvimz"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; @@ -17670,8 +17783,9 @@ in with self; { tidybins = derive2 { name="tidybins"; version="0.1.0"; sha256="1kwwz0y1anlf1l8yl80xyiggdi8alsh0drb1529rijfk2jxlljg9"; depends=[badger ClusterR dplyr framecleaner ggplot2 janitor lubridate magrittr OneR purrr rlang rlist scales strex stringr tibble tidyselect xgboost]; }; tidyboot = derive2 { name="tidyboot"; version="0.1.1"; sha256="0nss1ci763g9p5f33g163ppamx72axc8xhrils0cql3ka8439pmn"; depends=[dplyr modelr purrr rlang tidyr]; }; tidycat = derive2 { name="tidycat"; version="0.1.2"; sha256="1c8ib5zcz2xk7yrzh4j5q4ccv6lnw58sh2ggqn04k2wp0gcj2zcs"; depends=[dplyr forcats magrittr stringr tibble tidyr]; }; - tidycensus = derive2 { name="tidycensus"; version="1.2.3"; sha256="1zrjbxkzn1swkpx00krjvdpihpkbax4mm9fw81p0bq90dsxmig13"; depends=[crayon dplyr httr jsonlite purrr rappdirs readr rlang rvest sf stringr tidyr tidyselect tigris units xml2]; }; + tidycensus = derive2 { name="tidycensus"; version="1.3"; sha256="0hh5inc1nlw4khckdvy1kb243z8rd8bhbkvxjmpqys657bw52v39"; depends=[crayon dplyr httr jsonlite purrr rappdirs readr rlang rvest sf stringr tidyr tidyselect tigris units xml2]; }; tidycharts = derive2 { name="tidycharts"; version="0.1.3"; sha256="1clpjyvqv6xhv7n64xh411x867fnn581qckzcwn18xbbbs56k6nn"; depends=[htmlwidgets knitr lubridate magick magrittr rlang rsvg stringr testthat]; }; + tidyclust = derive2 { name="tidyclust"; version="0.1.0"; sha256="1b6is25xsip3x6ps5x3n8g8jmy7brq0rjcf5w4rdlqcrn1f43v32"; depends=[cli dials dplyr flexclust foreach generics glue hardhat modelenv parsnip prettyunits Rfast rlang rsample tibble tidyr tune vctrs]; }; tidycmprsk = derive2 { name="tidycmprsk"; version="0.2.0"; sha256="1smcjicx7xz07iagzv2a87kc9q0j2sgpnakhv7dc18zw2ndpls1q"; depends=[broom cli cmprsk dplyr ggplot2 gtsummary hardhat purrr rlang stringr survival tibble tidyr]; }; tidycode = derive2 { name="tidycode"; version="0.1.1"; sha256="0ahjhn1ar93xnd1snxnivdl43d1b6ica0pc30rgh8jpha87zbsay"; depends=[glue matahari pryr purrr rlang tibble]; }; tidycomm = derive2 { name="tidycomm"; version="0.2.1"; sha256="1h1xixa7fbijp1iifpwl689b1pz1vvpy7v4sc9wnkqgw0q31b3iy"; depends=[broom dplyr forcats glue magrittr MBESS purrr rlang stringr tibble tidyr]; }; @@ -17681,6 +17795,7 @@ in with self; { tidydr = derive2 { name="tidydr"; version="0.0.4"; sha256="0ws4z5ldz7wyhxn7h5gf8j4p3srvr5dfr6xxrf1rymx1iz9pd6sv"; depends=[ggplot2 rlang]; }; tidyestimate = derive2 { name="tidyestimate"; version="1.1.0"; sha256="0cwk6clah4sapbmfl5vvcv6di39azxb07z73pypnqx4gd32kk5q7"; depends=[dplyr ggplot2 ggrepel glue rlang]; }; tidyfast = derive2 { name="tidyfast"; version="0.2.1"; sha256="1bfs2wma705nx1lpndq75ama5dr9kkg8hwpklb20csnccnfrlvf6"; depends=[data_table Rcpp]; }; + tidyfit = derive2 { name="tidyfit"; version="0.6.0"; sha256="0jdjz20rw3r47w1h14zx5pfiynr0fnlqwbv1bkn42aqjzm6jdfgh"; depends=[broom crayon dials dplyr furrr magrittr MASS progressr purrr rlang rsample tibble tidyr yardstick]; }; tidyfst = derive2 { name="tidyfst"; version="1.7.5"; sha256="07sy6yyjpb0qkn8qhc4d228xxihjqrqw42g5afz5ai3h530qhj89"; depends=[data_table fst stringr]; }; tidyft = derive2 { name="tidyft"; version="0.4.5"; sha256="0l6ixaqj356q319ms0bf655f530cgiia9saqdx9lryaf0b6i2hxb"; depends=[data_table fst stringr]; }; tidygapminder = derive2 { name="tidygapminder"; version="0.1.1"; sha256="1m6bynwnw1msrzvdmy12w3ympinqpd8j3may3rwmg9941nndjv2d"; depends=[data_table dplyr readxl tidyr]; }; @@ -17689,7 +17804,7 @@ in with self; { tidygeoRSS = derive2 { name="tidygeoRSS"; version="0.0.1"; sha256="0bppkwbxmm8ps1cnrhzxkzm2pbi3s5bfiwx8fcrp31x81jl61w1x"; depends=[anytime dplyr httr jsonlite magrittr purrr rlang sf strex stringr tidyRSS xml2]; }; tidygeocoder = derive2 { name="tidygeocoder"; version="1.0.5"; sha256="1ffj8ka5miv3jnds7fdrkcqdc3m2w1ab724z9m10biky213skqka"; depends=[dplyr httr jsonlite lifecycle progress tibble]; }; tidygraph = derive2 { name="tidygraph"; version="1.2.2"; sha256="0w34jfldjkynbkyinmi1vdrfjhjrs47hm599mbnx4sxmnpbclmfm"; depends=[cli cpp11 dplyr igraph magrittr pillar R6 rlang tibble tidyr]; }; - tidyhydat = derive2 { name="tidyhydat"; version="0.5.7"; sha256="00jrczg2355pvbrbf50pn8b1v89nc4ir78bjpbn91il45iq05yc0"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; + tidyhydat = derive2 { name="tidyhydat"; version="0.5.8"; sha256="1bk3a0cgb0311xbni52zrpb7fa4vgdi022g7rap2af961fcbl6bz"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; tidyjson = derive2 { name="tidyjson"; version="0.3.1"; sha256="1rx5ncp20j9mhcziyqb0vgfq9061qylgvfwz27dsyz58r8fygwnq"; depends=[assertthat dplyr jsonlite magrittr purrr rlang tibble tidyr]; }; tidylda = derive2 { name="tidylda"; version="0.0.2"; sha256="1zwy94gpr43dc6ld3rjmr5rkapmxji6kd3p363zl03wn5qf3wbws"; depends=[dplyr generics gtools Matrix mvrsquared Rcpp RcppArmadillo RcppProgress RcppThread rlang stringr tibble tidyr tidytext]; }; tidylo = derive2 { name="tidylo"; version="0.2.0"; sha256="07xnbycwrqg3cmbxx76drbjd0mx4s23vf3kihlc9rj4ajjx48z8r"; depends=[dplyr rlang]; }; @@ -17702,7 +17817,7 @@ in with self; { tidypmc = derive2 { name="tidypmc"; version="1.7"; sha256="1fijlvdiw4vwm34wizm4xlm0x10vvpkldzk7rrla44apq7y2w3yq"; depends=[dplyr readr stringr tibble tokenizers xml2]; }; tidyposterior = derive2 { name="tidyposterior"; version="1.0.0"; sha256="19cyyhh417i5xcchb8kq3iycaf4y7aznr7y9r004h2k2vk3svc86"; depends=[dplyr generics ggplot2 purrr rlang rsample rstanarm tibble tidyr tune vctrs workflowsets]; }; tidypredict = derive2 { name="tidypredict"; version="0.4.9"; sha256="0x0r36zvny4rqgndx7iqh39yhr53gl4d8wd8wpvdcgg35q6z02z2"; depends=[dplyr generics knitr purrr rlang stringr tibble tidyr]; }; - tidyquant = derive2 { name="tidyquant"; version="1.0.5"; sha256="04cxaa661qfr5qz7lv9gjxswm0wh2p70xrdn3rma6wp92r4837mm"; depends=[alphavantager curl dplyr ggplot2 httr jsonlite lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod readr riingo rlang stringr tibble tidyr tidyselect timeDate timetk TTR xts]; }; + tidyquant = derive2 { name="tidyquant"; version="1.0.6"; sha256="0p1c9wzg4i84ajxd3lq4j1pvp24ni1kg6jhvlrjnhczwzjs8xjvc"; depends=[alphavantager curl dplyr ggplot2 httr jsonlite lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod readr readxl riingo rlang stringr tibble tidyr tidyselect timeDate timetk TTR xts]; }; tidyquery = derive2 { name="tidyquery"; version="0.2.3"; sha256="1xkcwccwc58140zdzwv6ip98c5vxjf67y7cbghvdzv2nx5agrhq9"; depends=[dplyr lubridate queryparser rlang stringr]; }; tidyqwi = derive2 { name="tidyqwi"; version="0.1.2"; sha256="16f0c2mdx6aiji6i7237kpc9awqdgrg6rhs408w6ag28dhxpgwlv"; depends=[dplyr furrr future httr jsonlite labelled magrittr purrr stringr tidyr xml2]; }; tidyr = derive2 { name="tidyr"; version="1.2.1"; sha256="1bv1rvnbbfdqf78qfbawq3yxjhjfdy0mgcla6b17bp336rnpcwb9"; depends=[cpp11 dplyr ellipsis glue lifecycle magrittr purrr rlang tibble tidyselect vctrs]; }; @@ -17717,8 +17832,8 @@ in with self; { tidystringdist = derive2 { name="tidystringdist"; version="0.1.4"; sha256="1srxh5gyspcghzvnmpyq36ky608ipf71vv0s1jg01mgf2i5pdkf4"; depends=[attempt rlang stringdist tibble]; }; tidysynth = derive2 { name="tidysynth"; version="0.1.0"; sha256="0rckvp51gp22bjcwcszdhhn51bzjivwndnvjcf67h1vmyqa3zjkj"; depends=[dplyr forcats ggplot2 kernlab LowRankQP magrittr optimx rgenoud rlang tibble tidyr]; }; tidytable = derive2 { name="tidytable"; version="0.9.1"; sha256="0daw83qjv6qdb45f297fv9rzzx37nji0jdc5p51bwv8azz9bdy2z"; depends=[data_table glue magrittr pillar rlang tidyselect vctrs]; }; - tidytags = derive2 { name="tidytags"; version="1.0.3"; sha256="04vz4zxnhnr9as1lwwi7mka7asjk557271iibdf67j02lcxj7zp1"; depends=[dplyr googlesheets4 rlang rtweet stringr]; }; - tidyterra = derive2 { name="tidyterra"; version="0.3.0"; sha256="1sn6nw1lhvs98qca27m9cbvb90injkvaj6anvq8k2iz413awdw5c"; depends=[cli crayon data_table dplyr ggplot2 magrittr rlang scales sf terra tibble tidyr]; }; + tidytags = derive2 { name="tidytags"; version="1.1.0"; sha256="1416kkd9ibi4l5xc1wfx22lhb0w6fi3g8dq2lp746w6kqlqbiqpz"; depends=[dplyr googlesheets4 rlang rtweet stringr]; }; + tidyterra = derive2 { name="tidyterra"; version="0.3.1"; sha256="16zw7zw17a2qh777nhv8iyzq5g7hxp4hqh3cb9lhmrscdfg9r5qw"; depends=[cli crayon data_table dplyr ggplot2 magrittr rlang scales sf terra tibble tidyr]; }; tidytext = derive2 { name="tidytext"; version="0.3.4"; sha256="0mk75wdiy4mixj1xlksw9ns4ajlj8ak90sgchjcg1zb90qp7gg56"; depends=[dplyr generics hunspell janeaustenr lifecycle Matrix purrr rlang stringr tibble tokenizers vctrs]; }; tidytidbits = derive2 { name="tidytidbits"; version="0.3.2"; sha256="1zbm165bimjag7azhy77zlzqilygybqxz35q4r3d7hi7p6m96w78"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; tidytransit = derive2 { name="tidytransit"; version="1.4"; sha256="12rhl9mb2hqwwad9sxa7lxyq012qhs9ga7y8ggigdq6nihmlqnrj"; depends=[checkmate data_table digest dplyr geodist gtfsio hms httr rlang sf]; }; @@ -17727,7 +17842,7 @@ in with self; { tidytuesdayR = derive2 { name="tidytuesdayR"; version="1.0.2"; sha256="00xlbmgg8779ypqcrdgn56lyklqknhh3pmqfc49f84xa5hrkyjfs"; depends=[httr jsonlite lubridate magrittr purrr readr readxl rstudioapi rvest usethis xml2]; }; tidyverse = derive2 { name="tidyverse"; version="1.3.2"; sha256="0qfgq4p2aq95j39xd5kcing2cacy7rzy7f6zf0bnpsa95svziyrp"; depends=[broom cli crayon dbplyr dplyr dtplyr forcats ggplot2 googledrive googlesheets4 haven hms httr jsonlite lubridate magrittr modelr pillar purrr readr readxl reprex rlang rstudioapi rvest stringr tibble tidyr xml2]; }; tidyvpc = derive2 { name="tidyvpc"; version="1.4.0"; sha256="1gcid4n21nkm7z6a91vnj08rzjhzvi9r4nvrgawad6s1grika8q9"; depends=[classInt data_table fastDummies ggplot2 magrittr mgcv quantreg rlang]; }; - tidywikidatar = derive2 { name="tidywikidatar"; version="0.5.4"; sha256="1cw71d8zs399xmdyi0xjb8h6r6wc55kp9zys1rffqr3nrxalmr0w"; depends=[DBI dplyr fs glue jsonlite magrittr pool progress purrr rlang RSQLite stringr tibble tidyr usethis vctrs WikidataQueryServiceR WikidataR WikipediR]; }; + tidywikidatar = derive2 { name="tidywikidatar"; version="0.5.5"; sha256="0fy1s36f6nsxxnyc5jb35r3mxzxhq5qcj71kv0d3avnfahhcjmgc"; depends=[DBI dplyr fs glue jsonlite magrittr pool progress purrr rlang RSQLite stringr tibble tidyr usethis vctrs WikidataQueryServiceR WikidataR WikipediR]; }; tidyxl = derive2 { name="tidyxl"; version="1.0.8"; sha256="05hkjwlv88ln0psqk5r8p2i4j6g3c3yfw2wmm73wcylcv33lh79h"; depends=[piton Rcpp]; }; tiff = derive2 { name="tiff"; version="0.1-11"; sha256="0xgc7vyndxxahfhc2qqzmwi56bnfyl0pn72l820jz5sd24aymhxq"; depends=[]; }; tigerhitteR = derive2 { name="tigerhitteR"; version="1.1.0"; sha256="0inyi12lf8bn7nbklf2rjixk6wrgrjcp8njv7knai4dgvv7v0rfa"; depends=[Hmisc magrittr openxlsx zoo]; }; @@ -17735,10 +17850,10 @@ in with self; { tigger = derive2 { name="tigger"; version="1.0.1"; sha256="130iwg2ds4j56a9ndg1p7qv4s6qbbahmm9fwmy6iak02ds1r0zyl"; depends=[alakazam doParallel dplyr foreach ggplot2 gridExtra gtools iterators lazyeval rlang stringi tidyr]; }; tightClust = derive2 { name="tightClust"; version="1.1"; sha256="0vqkp2g6z8y3b6dhzglmacjhf2qi1sg80kb941mwfafin2k40zbm"; depends=[]; }; tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.5"; sha256="0izgx1khci6qc6pz85dxj75kzxvpr30l0vhcv9476jrcbwqs4k8m"; depends=[DBI RSQLite]; }; - tigris = derive2 { name="tigris"; version="1.6.1"; sha256="1cid3cpjlc56mskyx0phd7h969jihxbdkpmly08cq2qjyyiqszlj"; depends=[dplyr httr magrittr maptools rappdirs rgdal sf sp stringr uuid]; }; + tigris = derive2 { name="tigris"; version="2.0"; sha256="0fbhq2jznwxnvqk2zndnp923az8kvbq667i15m5xx9lq42zfzwix"; depends=[dplyr httr magrittr rappdirs sf stringr uuid]; }; tiktokadsR = derive2 { name="tiktokadsR"; version="0.1.0"; sha256="17x6nxp88iji376qhvvkgxyfcbxz9bvfgv9kmhiznlhq64srdjfs"; depends=[jsonlite]; }; tikzDevice = derive2 { name="tikzDevice"; version="0.12.3.1"; sha256="040yz6wi05151m9nal97symv66a133kk0a8c1h6nz058zk081vav"; depends=[filehash png]; }; - tiledb = derive2 { name="tiledb"; version="0.16.0"; sha256="1025cvsxb128j5yky5pb57sjkixhy1j4gf5k1f6a8nj48ygqbf6p"; depends=[nanotime Rcpp]; }; + tiledb = derive2 { name="tiledb"; version="0.17.0"; sha256="0s7fs80x4alzl0z1ssxzcjm6ydy71qk4bpsrhqg8wi4kmxzfmqyr"; depends=[nanotime Rcpp RcppSpdlog spdl]; }; tilegramsR = derive2 { name="tilegramsR"; version="0.2.0"; sha256="11cnyvlghg8z7lr9ahzsjpyjrqnxqs77wdcydqvavrsqj745xvi2"; depends=[sf sp]; }; tilemaps = derive2 { name="tilemaps"; version="0.2.0"; sha256="06pwwlndb7nvw2b0h0fak3vnpbi11mxsby43qm9ng3k3sqwrqjz2"; depends=[clue ggplot2 igraph lwgeom sf smoothr]; }; tiler = derive2 { name="tiler"; version="0.2.5"; sha256="02sxc70s8v5b5lf1fpv1ig1hmpkamsmzbgpk6zds504gh9kz7qxy"; depends=[png raster rgdal sp]; }; @@ -17746,27 +17861,27 @@ in with self; { timbeR = derive2 { name="timbeR"; version="2.0.1"; sha256="01lpx4pk22k9j4sbbhr9z7r6spfdrfazpxsyp7cxndrswa8m83zq"; depends=[cowplot dplyr ggplot2 magrittr miniUI shiny tibble tidyr]; }; timbr = derive2 { name="timbr"; version="0.1.1"; sha256="154ybky7bq3y5d9945yk36lqkl2kf6yc2x8m6izc0jdnqhydlxlp"; depends=[dplyr memoise pillar purrr rlang tibble tidygraph vctrs]; }; time_slots = derive2 { name="time.slots"; version="0.2.0"; sha256="04qh8cgk3ixvvc67m2hal935m5kisq2n67cvjmsg1frz1bf2yvld"; depends=[dplyr ggfittext ggplot2 lubridate scales]; }; - timeDate = derive2 { name="timeDate"; version="4021.106"; sha256="1qhh1d85s8r4wkcf4fljfm67lnkj8flnx9iz4hdg305xdkng3b8l"; depends=[]; }; + timeDate = derive2 { name="timeDate"; version="4021.107"; sha256="1i54a425r5hi08yl9rb2qh1nynh29ppv9b4h46cxyzn1ybqlr9sg"; depends=[]; }; timeR = derive2 { name="timeR"; version="1.2.0"; sha256="0lkx2ilbzq29w1c9ssya4f0za0sj7y30y9ml4v3zc21c1la0b6vi"; depends=[lubridate R6]; }; timeROC = derive2 { name="timeROC"; version="0.4"; sha256="1qxijg7hazc8bifwj2254ig2p3cbrp9p0bsyhhh3aikf1rg113v1"; depends=[mvtnorm pec]; }; timeSeq = derive2 { name="timeSeq"; version="1.0.4"; sha256="0m59g12dmnwpmwjmyb9x6z53x3gjmxcaxqva2dlbazsqkbzgaayp"; depends=[gss lattice mgcv pheatmap reshape]; }; timeSeries = derive2 { name="timeSeries"; version="4021.105"; sha256="1k6vihbs20m7zjrxh13y9mmsvnia3844c7j13p0b7m5i9fb6rqxz"; depends=[timeDate]; }; - timechange = derive2 { name="timechange"; version="0.0.2"; sha256="15qyvhs96n2s5ply2dbs07i9mpvpvffd7ni5w668f10l3hixfhq8"; depends=[Rcpp]; }; + timechange = derive2 { name="timechange"; version="0.1.1"; sha256="0w3zbmzhg3zr5d9aa83kmr6gyhk75l7jysa7zs0pnz9x4ffr20w5"; depends=[cpp11]; }; timedelay = derive2 { name="timedelay"; version="1.0.11"; sha256="0hr5a2m621ybvl4qyx1xgwzviszj4ccvb149yclds9z87r5h2gm4"; depends=[MASS mvtnorm]; }; timedeppar = derive2 { name="timedeppar"; version="1.0.2"; sha256="0jazddjqrgipvpdxlqh8y3clhhad22syqw4hhaj19cdbxpvivgvw"; depends=[mvtnorm]; }; timelineS = derive2 { name="timelineS"; version="0.1.1"; sha256="076w8ckzzl59bc1gnwjgdwynnz86320hyfmzb0k26hl3k13jlmxs"; depends=[dplyr ggplot2 lubridate magrittr]; }; timeordered = derive2 { name="timeordered"; version="0.9.9"; sha256="0rfga5i6kckmlz2dzqb1pp634dl93wxp7v3kisxlbjl7mgnbck3k"; depends=[igraph plyr]; }; timeperiodsR = derive2 { name="timeperiodsR"; version="0.6.2"; sha256="09vwp04j7n176xs1lbdmbyi557byx6fdvqyjay1785hkb9ivws5q"; depends=[lubridate]; }; - timereg = derive2 { name="timereg"; version="2.0.3"; sha256="0v5hmnppnv9ih29q4zmh8s9qxkdwaqg97093fldsy3fxs7g50dxv"; depends=[lava numDeriv survival]; }; + timereg = derive2 { name="timereg"; version="2.0.4"; sha256="1960z7r41v1bp9k0i74kah5933sv6mxdmrbijzky6a3dlzmmsn11"; depends=[lava numDeriv survival]; }; timeseriesdb = derive2 { name="timeseriesdb"; version="1.0.0-1.1.2"; sha256="17j1nxpgbfbzmfc6zrgcw68ri9ncslic9qdkxkdpfr2gi1w61bpc"; depends=[data_table DBI jsonlite RPostgres xts]; }; - timetk = derive2 { name="timetk"; version="2.8.1"; sha256="1p893jwbyslzmmjk099w2ckqga3vhmvjrrkh6d6gfy6ngf90zh0f"; depends=[anytime assertthat dplyr forcats forecast generics ggplot2 hms lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr tidyselect timeDate tsfeatures xts zoo]; }; + timetk = derive2 { name="timetk"; version="2.8.2"; sha256="1zfqrk2qw4f13zxdl5qd8b6f3c59xvq5dprqd4r6nb7w6cqim4cc"; depends=[anytime assertthat dplyr forcats forecast generics ggplot2 hms lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr tidyselect timeDate tsfeatures xts zoo]; }; timetools = derive2 { name="timetools"; version="1.14"; sha256="13jchgd9fc8hxj74wm1kg4rwcng4yxblkq04i33djsqghgb5f9mj"; depends=[]; }; - timevis = derive2 { name="timevis"; version="2.0.0"; sha256="07padnd90s8s62sfcmg5l6b64md1cl4cfsxp5xm92nrlz82ksbbs"; depends=[htmltools htmlwidgets jsonlite lubridate magrittr rmarkdown shiny]; }; + timevis = derive2 { name="timevis"; version="2.1.0"; sha256="16b2iwf1lrw5b8am8c5xqkyg6inwac09qgbp0yigf3isd3qqs829"; depends=[htmltools htmlwidgets jsonlite magrittr rmarkdown shiny]; }; timsac = derive2 { name="timsac"; version="1.3.6"; sha256="186919qka9j3kfpdw2gbh16n48d6xgz9lfqgk4b17f1d7l72iplg"; depends=[]; }; timsr = derive2 { name="timsr"; version="0.0.3"; sha256="1n9xq01rfk5v0x0r8cr481s93nh99nf3kshb41d43r7zdw2dcwfi"; depends=[data_table opentimsr]; }; tinkr = derive2 { name="tinkr"; version="0.1.0"; sha256="161jm3hswzfwq31mzr11zzkfw6s488ax7n82g32zy8c6j6k71mr7"; depends=[commonmark glue magrittr purrr R6 stringr xml2 xslt yaml]; }; tinsel = derive2 { name="tinsel"; version="0.0.1"; sha256="0n1x0cf4x6cq1yks0444nxd9snga4m6inc5lfvb7k96fzjb3xgbp"; depends=[]; }; - tint = derive2 { name="tint"; version="0.1.3"; sha256="00830n5nl6p73v9w0yzsak56phz4w1fh5lhf1c42gg1i81x7swnx"; depends=[htmltools knitr rmarkdown]; }; + tint = derive2 { name="tint"; version="0.1.4"; sha256="1vkdgxxgcj3qk3858sp3zi7c2id3dq0zxz23xd4i8lgbqgvvh2s3"; depends=[htmltools knitr rmarkdown]; }; tinter = derive2 { name="tinter"; version="0.1.0"; sha256="02hfw2720qn70x0piahm8cy2ajsb5bqapr4vyvknm4v1yka1wmw3"; depends=[chk]; }; tinyProject = derive2 { name="tinyProject"; version="0.6.1"; sha256="0cflnfp5mib3j1y3n5yvi867h5a7z6xr6163gq9y9b6nrl2skxfk"; depends=[brew R_utils]; }; tinyarray = derive2 { name="tinyarray"; version="2.2.7"; sha256="0nhsmgg126x2rfk82d91c8rk74sg7qbshy10vcbqdgcmlz6466mh"; depends=[BiocManager clusterProfiler dplyr ggplot2 limma org_Hs_eg_db patchwork pheatmap stringr survival survminer tibble]; }; @@ -17776,12 +17891,13 @@ in with self; { tinytest = derive2 { name="tinytest"; version="1.3.1"; sha256="1mq31f7bzcz5bkgzl9khm1i80axfzra7gcjqxd2yqb4wrw1m3x4s"; depends=[]; }; tinytex = derive2 { name="tinytex"; version="0.42"; sha256="1c925r62h84mhwd7v5j35ckdldf6cwb3wzczdn5s72hig0cplpr0"; depends=[xfun]; }; tinytiger = derive2 { name="tinytiger"; version="0.0.4"; sha256="17j5lxlbg6jyw5zpbgaxjhnydiiyrl2d010s5wq8p7jx16sji0w1"; depends=[cli curl glue rlang sf]; }; + tip = derive2 { name="tip"; version="0.1.0"; sha256="11khhkszd5a81q0h6acx5rvp1k97qj1srcvz2jilwf3v6nrz7daz"; depends=[changepoint doParallel foreach GGally ggplot2 igraph LaplacesDemon mniw network rlang]; }; tipa = derive2 { name="tipa"; version="1.0.5"; sha256="1mdjpbdbgd5n22l7fc0bfansh536ib1bgjaxzrl8g534cjxdnhgl"; depends=[optimr]; }; tipitaka = derive2 { name="tipitaka"; version="0.1.2"; sha256="0xf64bpzwywwjm0135c7zjn4ha0h1zj36rj2d4h8dskiq9z90xqi"; depends=[cpp11 dplyr magrittr stringi stringr]; }; - tipmap = derive2 { name="tipmap"; version="0.3.7"; sha256="0w9isg53zvhd2g3icfrdavcq33cg4v9ynljyn5p73p4ifai7mgdz"; depends=[dplyr ggplot2 purrr RBesT]; }; + tipmap = derive2 { name="tipmap"; version="0.3.9"; sha256="186k7d4hvbk5yrz0h23s2k1nakd2fjsc38jj4c0w6f94ldnbp00k"; depends=[dplyr ggplot2 purrr RBesT]; }; tippy = derive2 { name="tippy"; version="0.1.0"; sha256="00c9v07ax7l0x5wpx3ca8hqvdqs3p62d58igp51rsbh9x1ylgjcn"; depends=[htmltools htmlwidgets jsonlite shiny]; }; tipr = derive2 { name="tipr"; version="1.0.1"; sha256="0lx6s0yiyl26gn49xlydyl49b7qb3rl94lahlcyhryayp8sns2ni"; depends=[glue purrr sensemakr tibble]; }; - tipsae = derive2 { name="tipsae"; version="0.0.7"; sha256="1mvik61p9031p4d409ff1ymz6bq1izhwnrid1f9snlrdm9n7inkk"; depends=[BH broom ggplot2 ggpubr nlme Rcpp RcppEigen RcppParallel Rdpack rstan shiny StanHeaders]; }; + tipsae = derive2 { name="tipsae"; version="0.0.9"; sha256="0mrv3jw219jra70jr5lj87jvsr6pphmr7nbcns41qiynnaddrfad"; depends=[BH broom ggplot2 ggpubr nlme Rcpp RcppEigen RcppParallel Rdpack rstan shiny sp StanHeaders]; }; tis = derive2 { name="tis"; version="1.39"; sha256="1sq3acz8mybsbxng5fga4ynqvh1ly9hs3ca727jiyx1gam712mis"; depends=[]; }; titanic = derive2 { name="titanic"; version="0.1.0"; sha256="0mdmh0ciwfig00847bmvp50cyvj8pra6q4i4vdg7md19z5rjlx3j"; depends=[]; }; titeIR = derive2 { name="titeIR"; version="0.1.0"; sha256="047vidn3zydbjijwgz6qm2d9j2ny8ng2sv5jzm8zb300y7k2426c"; depends=[Iso]; }; @@ -17834,20 +17950,20 @@ in with self; { tools4uplift = derive2 { name="tools4uplift"; version="1.0.0"; sha256="1izm9q2bj9l2nd9jn0fi3lf9hscfa0vmib58ypgpjsbsn0nd7p2h"; depends=[BiasedUrn dplyr glmnet latticeExtra lhs]; }; topdowntimeratio = derive2 { name="topdowntimeratio"; version="0.1.0"; sha256="0dbn9hs3fsmwkjipk5wyl5wj02hv56ipcr9pmj068c4y6rm3qiqv"; depends=[data_table geodist lubridate magrittr]; }; topicdoc = derive2 { name="topicdoc"; version="0.1.1"; sha256="195yly7r14cpavbbr02iq3lqfb0gcx5cngfigivnid1rk45wv7bz"; depends=[slam topicmodels]; }; - topicmodels = derive2 { name="topicmodels"; version="0.2-12"; sha256="1d6iizmn042b59q2y6qc82z19wq3xm0zvgkf8iqf8fdzh51kmn5g"; depends=[modeltools slam tm]; }; + topicmodels = derive2 { name="topicmodels"; version="0.2-13"; sha256="16mw0l7wm5idc831csxlk176c42a5xw8qm8xhbnmmdl2hjk0cqbx"; depends=[modeltools slam tm]; }; topicmodels_etm = derive2 { name="topicmodels.etm"; version="0.1.0"; sha256="06w2n1gswv268sgzm0nz14mmrahibnsgcxh7hcks3bmq9r8d9ba4"; depends=[Matrix torch]; }; - topmodel = derive2 { name="topmodel"; version="0.7.4"; sha256="18k0nz2i2jr0m2pmzy75d77drbk1smrw7kkni7j0k79m9izwsmkc"; depends=[]; }; + topmodel = derive2 { name="topmodel"; version="0.7.5"; sha256="1bhzjy2ja4953a5wx8s3cz3v0ip6lym193faqxxabxjklgbsp416"; depends=[]; }; topoDistance = derive2 { name="topoDistance"; version="1.0.2"; sha256="1n6108giihc4aa1871m558s2z96m766ysvhak5b6zg1bnvpdj0l8"; depends=[gdistance plotly raster RColorBrewer scales sp]; }; topologyGSA = derive2 { name="topologyGSA"; version="1.4.7"; sha256="073n8bkrapk6il3izqr3bmcdp7yc29yzpbyzh6fvy9rg0x4d3g0z"; depends=[fields graph gRbase qpgraph]; }; - topr = derive2 { name="topr"; version="1.1.0"; sha256="04vzis26zarxi3bqhvhiazn1if63k0rfc6b2znd555z3lq6hdd0q"; depends=[dplyr egg ggplot2 ggrepel gridExtra magrittr scales stringr tidyr toprdata]; }; + topr = derive2 { name="topr"; version="1.1.1"; sha256="1c5m4422rx3hv62s0v2b2n3scfd66vhpq5gpxh81wzn32p0wcvii"; depends=[dplyr egg ggplot2 ggrepel gridExtra magrittr scales stringr tidyr toprdata]; }; toprdata = derive2 { name="toprdata"; version="1.0.1"; sha256="0mn8j28b93blr2xfkbwha8mpmlhw6yy7yw84p3q80llapxqiy90a"; depends=[]; }; topsis = derive2 { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; }; tor = derive2 { name="tor"; version="1.1.2"; sha256="1s34hzw3a4cm9gk85fcxgxwmn2xc7njs1iw1snd91id3gdl6vppx"; depends=[fs readr rlang tibble]; }; torch = derive2 { name="torch"; version="0.9.0"; sha256="1iylnz0hsi00q7hngi2h24kg3nvjjg10z6iarqhp3wylsasgjs1f"; depends=[bit64 callr cli coro ellipsis magrittr R6 Rcpp rlang withr]; }; - torchdatasets = derive2 { name="torchdatasets"; version="0.1.0"; sha256="1iliz3iv143zmffd4jvvfxzsqn8bzp1sg5573rqjjbhnvy958mgg"; depends=[fs pins stringr torch torchvision withr zip]; }; + torchdatasets = derive2 { name="torchdatasets"; version="0.2.0"; sha256="0h558d5vzxibigb5hvvfllbaxfqkdjjrl51zzj89jwmmpkcjc8zd"; depends=[fs pins stringr torch torchvision withr zip]; }; torchopt = derive2 { name="torchopt"; version="0.1.2"; sha256="056j1fw759h81c0mlaadw5jb19ydpvjy85nhbjsn5k8a9azf4wki"; depends=[torch]; }; torchvision = derive2 { name="torchvision"; version="0.4.1"; sha256="07pdsqcnlmsc1yx7ldi18a0lqkgqbqwsqh7109rbrycczxrc1dqv"; depends=[abind fs jpeg png rappdirs rlang torch withr]; }; - torchvisionlib = derive2 { name="torchvisionlib"; version="0.2.0"; sha256="172kspvyv7fkd86cj16xdifzl8cln0fi227pvxsfqpr6d6rkzqg5"; depends=[glue Rcpp rlang torch]; }; + torchvisionlib = derive2 { name="torchvisionlib"; version="0.3.0"; sha256="01l04zabja3ancay7ynb5i7knqm1gd5101sx07fbid185w5j8yh4"; depends=[glue Rcpp rlang torch withr]; }; tornado = derive2 { name="tornado"; version="0.1.1"; sha256="12wvcc5p5fk6b1w3qhahjad5k0m34f744jszaid8hnrbbfysp8na"; depends=[assertthat ggplot2 gridExtra scales survival]; }; tosca = derive2 { name="tosca"; version="0.3-2"; sha256="1z8svczy93lpdj7n1gk9jz8jgzkjsf886ldlkgq1mfi1j6m8557y"; depends=[data_table htmltools lda lubridate quanteda RColorBrewer stringr tm WikipediR]; }; toscmask = derive2 { name="toscmask"; version="1.2.3"; sha256="1inryfbci03klv4rlkzf20f3a0sc187lxybd4yn1dimz6f5z71ni"; depends=[]; }; @@ -17856,7 +17972,7 @@ in with self; { totalcensus = derive2 { name="totalcensus"; version="0.6.6"; sha256="09c7hm9yys48p8pjp9kv3szbwrg9xb1xf47zya24yir0gxs7bfmi"; depends=[data_table magrittr purrr stringr]; }; touch = derive2 { name="touch"; version="0.1-6"; sha256="0w25zxxj5qaxkx64vz55qw4k4szx85ncbcam7q600ryy1kc5xxxv"; depends=[Rcpp]; }; touchard = derive2 { name="touchard"; version="2.0.1"; sha256="06491r4x3ycmv3ddbqwig334wj9qvm395xlaifx4hjjyyi65xb3q"; depends=[MASS nleqslv numDeriv plotrix]; }; - tourr = derive2 { name="tourr"; version="0.6.1"; sha256="1l39glvs8amd52ihnqa9nflh2mc0crb0jaqmpij2rxr3fnbc5mp8"; depends=[dplyr MASS tibble]; }; + tourr = derive2 { name="tourr"; version="0.6.2"; sha256="16cbybg9g0b8439scw5h3n1a0asnd5yvs91g6mcfipwfyzix045s"; depends=[dplyr MASS tibble]; }; toxEval = derive2 { name="toxEval"; version="1.2.0"; sha256="11rw8vjnz3kzikd59vbyiv8vc7dijpi6znyxlc7c4rpi41gs6c0m"; depends=[dplyr DT ggplot2 leaflet magrittr RColorBrewer readxl shiny shinyAce shinycssloaders shinydashboard tidyr]; }; toxpiR = derive2 { name="toxpiR"; version="1.2.1"; sha256="0n6x87gyzxsib267h0gs5b4sdkwmgjpgqzipfhlrjsnxq55q6599"; depends=[BiocGenerics pryr rlang S4Vectors tidyr]; }; tpAUC = derive2 { name="tpAUC"; version="2.1.1"; sha256="0wix9qwcidj7xfqhh7bmrpnadd9qlkvg3515gaamdxkjbz2kyydc"; depends=[pROC]; }; @@ -17867,7 +17983,7 @@ in with self; { tracer = derive2 { name="tracer"; version="1.0.0"; sha256="1jdh4ljcz7d0w2y5miggqkvv397jdx7fn108hbjw93af2gnh698q"; depends=[clisymbols crayon prettycode]; }; tracerer = derive2 { name="tracerer"; version="2.2.2"; sha256="0932074lzkzprn8rr8f59ywhgn33fwvbnkxnxg97k29gapx49iyb"; depends=[jsonlite Rcpp testit]; }; tracheideR = derive2 { name="tracheideR"; version="0.1.1"; sha256="1x1jwzgs2aqb3k17mm9mhfhnbwcmilhkjaz9rl40rcg84xjqdrpl"; depends=[tgram]; }; - track2KBA = derive2 { name="track2KBA"; version="1.0.3"; sha256="09w5cnkqpl88kaq5303dlpiw2jha96nm457a62aszcdb871r470x"; depends=[adehabitatHR dplyr foreach geosphere ggplot2 lubridate magrittr maps maptools Matching move purrr raster rgdal rgeos rlang sf sp tidyr]; }; + track2KBA = derive2 { name="track2KBA"; version="1.0.4"; sha256="0g4i896yyv2kyjs5icavrx3h91wr9jnmgw8wykhvhakwpjr64cgf"; depends=[adehabitatHR dplyr foreach geosphere ggplot2 lubridate magrittr maps maptools Matching move purrr raster rgdal rgeos rlang sf sp tidyr]; }; trackdem = derive2 { name="trackdem"; version="0.6"; sha256="069nl1i73ayjnlsds4dnz6w4n765jijimgz20n9az7r0irvaddhi"; depends=[MASS neuralnet png raster Rcpp RcppArmadillo shiny]; }; trackdf = derive2 { name="trackdf"; version="0.2.2"; sha256="110m7dmciyqbcb69sxi02h5djnf098wzfr84d6yppyc73a81989y"; depends=[data_table lubridate sp tibble]; }; trackdown = derive2 { name="trackdown"; version="1.1.1"; sha256="1l8mqdfpdf25vyibxqcqhyip6aqllb9riz2v6w4k1rfc8b9dl07f"; depends=[cli googledrive rmarkdown]; }; @@ -17886,25 +18002,25 @@ in with self; { traits = derive2 { name="traits"; version="0.5.0"; sha256="04s2523wkbjqxpwllvcy7ikyfri5gldgnynjswsxdy0k945wacvz"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; }; traj = derive2 { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster GPArotation NbClust pastecs psych]; }; trajeR = derive2 { name="trajeR"; version="0.9.0.5"; sha256="1zy3hg1m1a5dpx494mlb72vfpng5892dcginv6rwxc2c1ggv6z86"; depends=[capushe MASS minpack_lm numDeriv Rcpp RcppArmadillo ucminf]; }; - trajectories = derive2 { name="trajectories"; version="0.2-4"; sha256="11h735zqlz8jg7syn46xg5kmv807px94la6gnml2jlcn2hld2a2l"; depends=[lattice sp spacetime zoo]; }; + trajectories = derive2 { name="trajectories"; version="0.2-5"; sha256="0wijsv6j0w0a0lz6y1iflznnr7aa2vbbwl5xzixjvq3ivwjdcgcl"; depends=[lattice sp spacetime zoo]; }; trajr = derive2 { name="trajr"; version="1.4.0"; sha256="092hx27b6d0vy1pvmga1z3b245aa9gn9aw3hszbhhkkic5zfpgbq"; depends=[plotrix signal]; }; - tram = derive2 { name="tram"; version="0.7-2"; sha256="0wnj5c93by6svbh8b749khcjn9ksygddmnhg1v4i743snm1gl9l9"; depends=[basefun Formula Matrix mlt multcomp sandwich survival variables]; }; + tram = derive2 { name="tram"; version="0.8-0"; sha256="00jqg9pfy14l18ydgds5mylchb0rnyn80wy7f9w9y9nms5ri579j"; depends=[basefun Formula Matrix mlt multcomp mvtnorm sandwich survival variables]; }; tramME = derive2 { name="tramME"; version="1.0.3"; sha256="1xsxn3y809wyyxvzdi9db9pkw1bnvypykmjjy3qwzxd9q3f9i48c"; depends=[alabama basefun coneproj lme4 MASS Matrix mgcv mlt nlme numDeriv RcppEigen TMB tram variables]; }; tramnet = derive2 { name="tramnet"; version="0.0-7"; sha256="0a7czkg69js07ryqwa2x0q83spcawm6jahq8fn8invnglk9iw8rs"; depends=[basefun CVXR lhs mlr mlrMBO mlt ParamHelpers sandwich smoof tram]; }; trampoline = derive2 { name="trampoline"; version="0.1.1"; sha256="05inq5j8gvnpww6z21dzc57vilsm4gx3m274fpsamp54q85mi68s"; depends=[coro fastmap rlang]; }; - tramvs = derive2 { name="tramvs"; version="0.0-2"; sha256="0rwfs5yjpz9k1qls5jsk0w8f0ck417m03r7wjcsrxjndqk7pnymi"; depends=[cotram tram variables]; }; + tramvs = derive2 { name="tramvs"; version="0.0-3"; sha256="1fn119wliap4947gma0d7lvqbbwqavyd449m38pzvf9425i7a5ns"; depends=[cotram tram variables]; }; tranSurv = derive2 { name="tranSurv"; version="1.2.2"; sha256="17rvzjcn76z5niw1jappiadbkf66a9x0m7p3251lgb7qrnvpx3gk"; depends=[rootSolve SQUAREM survival truncSP]; }; transPlotR = derive2 { name="transPlotR"; version="0.0.2"; sha256="0xk7lqv4nf6565msschz72mqfdmpvvfylv0acj9qlg6jsanfxii7"; depends=[cowplot dplyr geomtextpath ggarchery ggplot2 magrittr purrr tidyverse]; }; transcribeR = derive2 { name="transcribeR"; version="0.0.0"; sha256="0y2kxg2da71i962fhsjxsr2ic3b31fmffhj3gg97b0nykfpcviib"; depends=[httr]; }; - transfR = derive2 { name="transfR"; version="1.0.0"; sha256="1lmxdy5fj23sg9c27biyca8vzvs1x5cfhayyzicv4c7jjp09z5vd"; depends=[doParallel foreach Rdpack sf stars units]; }; + transfR = derive2 { name="transfR"; version="1.0.2"; sha256="1ricgs7297wdmrw2vp5r6hxd266cq14c3nz2rrcas0vphmw1f5hl"; depends=[doParallel foreach Rdpack sf stars units]; }; transforEmotion = derive2 { name="transforEmotion"; version="0.1.1"; sha256="0lnmgbsh26mazx0g1s0jxg3jk1a6vw3bsaw07viv9kx3rdf6wc46"; depends=[dplyr LSAfun osfr pbapply remotes reticulate]; }; + transform_hazards = derive2 { name="transform.hazards"; version="0.1.0"; sha256="1k9p40dp3s4ylrh91cj06k4ryazw6b870yj5vdsd30j95pwnf3wi"; depends=[]; }; transformmos = derive2 { name="transformmos"; version="0.1.0"; sha256="1hsp399cj6cnsysb4hm4ra075qm2fxkjhyq16m3nai51fvzkak0p"; depends=[]; }; transformr = derive2 { name="transformr"; version="0.1.4"; sha256="0h0zcsqyjxkc5g6zg79h7nq5z2rzfj93i1livwrkjj622y1br4y1"; depends=[cpp11 lpSolve rlang sf tweenr vctrs]; }; - translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; }; transmdl = derive2 { name="transmdl"; version="0.1.0"; sha256="16lvcjwb7hq4a4925kqnas7c4xqw3gpbad3fcghp0qm4whyig8dg"; depends=[Rcpp RcppEigen statmod survival]; }; transmem = derive2 { name="transmem"; version="0.1.1"; sha256="1a3c5ddmh9k4f80rbk363s7rkx30qhk9ssmf7xg7rr0lwxphahf3"; depends=[cmna ggformula ggplot2 plot3D]; }; transplantr = derive2 { name="transplantr"; version="0.2.0"; sha256="1kzi8rvswsmibxqnhqd1j42y848si6cxd8hpvwi55y8s4hcylw0y"; depends=[]; }; - transport = derive2 { name="transport"; version="0.12-4"; sha256="0wvrsrlzv56lgn60c5w6fjg1zg1yvnnmnw7rm55zdycrjrkar5al"; depends=[data_table Rcpp RcppEigen]; }; + transport = derive2 { name="transport"; version="0.13-0"; sha256="0msz7z4mcz4s8sffqxsxjv5pwg2cwsg55fg477pr4vp3jgfznpn5"; depends=[data_table Rcpp RcppEigen]; }; transx = derive2 { name="transx"; version="0.0.1"; sha256="1xx934w4fhk2nwm5h6lf4irj83wsfp8lbplzcha5rnc7aka8pn3v"; depends=[rlang]; }; trapezoid = derive2 { name="trapezoid"; version="2.0-2"; sha256="1pqb888w0q2zhcgjn0q4na2qwbxy4i8kfk6pp2id20gh8s96sm3f"; depends=[]; }; traudem = derive2 { name="traudem"; version="1.0.1"; sha256="0qxvh5zfj14yaywjzf83v01v6n064iq16ba8g72yh0pbb8i98w9i"; depends=[cli purrr rlang sys withr]; }; @@ -17914,6 +18030,7 @@ in with self; { tree_interpreter = derive2 { name="tree.interpreter"; version="0.1.1"; sha256="18p1x53q1hhhagglgsq2axnr9l5rpa08vxjayqqmb6rsjrkygn78"; depends=[Rcpp RcppArmadillo]; }; treeClust = derive2 { name="treeClust"; version="1.1-7"; sha256="1s7kh6q0bkixsygrip95zf1bi10ihddsa5lq9dfxd68yh8rsby6z"; depends=[cluster rpart]; }; treeDA = derive2 { name="treeDA"; version="0.0.5"; sha256="0rdqvjj16w7ykpxd6m800h4zv79y9c1phhkl14xy10gbi2cqh10g"; depends=[ape ggplot2 gtable Matrix mvtnorm phyloseq reshape2 sparseLDA]; }; + treePlotArea = derive2 { name="treePlotArea"; version="1.3.1"; sha256="1fkm6jac2j3r2s3whd3aql8czflpd99kmq5wa0nfb5qrynpvim7s"; depends=[sf]; }; treebalance = derive2 { name="treebalance"; version="1.1.0"; sha256="0wxsd9mx7bcz95vn4a9w1bzqvd8v1qk5qv00p3x58qks7nzxyzdv"; depends=[ape memoise]; }; treebase = derive2 { name="treebase"; version="0.1.4"; sha256="1bx31jahb0wy2g8wl1z71vy659lfi8fq1sbbaxvyixzcwymix1wq"; depends=[ape httr RCurl XML]; }; treeclim = derive2 { name="treeclim"; version="2.0.6.0"; sha256="0zdn766vxgycisjyjw7nh7hs817kqhdihyla3fhpzykw9pxnw0b2"; depends=[abind boot ggplot2 lmodel2 lmtest np plyr Rcpp RcppArmadillo]; }; @@ -17931,7 +18048,6 @@ in with self; { treespace = derive2 { name="treespace"; version="1.1.4.1"; sha256="177n1h4yjvfmdsyy4anwi1gfxcxxvhdlyqagn74ni3pi6mxvjp4s"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn phytools Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; }; treestartr = derive2 { name="treestartr"; version="0.1.0"; sha256="05rxy9lmb77ng4266871sd881mlp4rd5qalvsd7ps2x2j4plaqf4"; depends=[ape phytools]; }; treestructure = derive2 { name="treestructure"; version="0.1.0"; sha256="0514q53bdwv9fwd58srhr6lzw1j56fcd64hml8w4rv4wzcd6c01m"; depends=[ape Rcpp]; }; - treetop = derive2 { name="treetop"; version="0.0.4"; sha256="0lisrbmzkil723jwcj422zglr78lbryny02wmnaw7zv2w9gw3xac"; depends=[geometry lidR pryr raster rasterVis RColorBrewer rgdal rgeos rgl sf shiny sp spatstat_core spatstat_geom stars]; }; trekcolors = derive2 { name="trekcolors"; version="0.1.3"; sha256="0jm85lrsqlpl1k62fbim48kprsqs50bm0dbajnk8f42x6i3m1xav"; depends=[ggplot2]; }; trekfont = derive2 { name="trekfont"; version="0.9.5"; sha256="1c0rwjmpg6b83kvkwrc0fcg1adx5is1g0wn01iss037jph5j0f2l"; depends=[]; }; trelliscopejs = derive2 { name="trelliscopejs"; version="0.2.6"; sha256="16i1km57yz8bl4ni919d3qmj8aj5l88l7byhd6ksh88ygpfl7wq8"; depends=[autocogs base64enc digest DistributionUtils dplyr ggplot2 gtable htmltools htmlwidgets jsonlite knitr progress purrr rlang tidyr webshot]; }; @@ -17956,7 +18072,6 @@ in with self; { trimmer = derive2 { name="trimmer"; version="0.8.1"; sha256="0hn5pignj5clg7wb3xd0mh9jqc480wqxxymzaas68lxzi6p5mng9"; depends=[cli crayon data_table pryr]; }; trimr = derive2 { name="trimr"; version="1.1.1"; sha256="12z194g67b8g4vv1667hzhmns9mhw93icvdkxf2d45wfyjfdvsvv"; depends=[dplyr]; }; trinROC = derive2 { name="trinROC"; version="0.6"; sha256="0jpnr3l8f057k334sx803cc7kxgi8mxvxjgli88f8682ax9z47k3"; depends=[ggplot2 gridExtra rgl]; }; - trip = derive2 { name="trip"; version="1.8.5"; sha256="160dp9ji8j4w2fwh62l6cp485iy5n5is451rbgf28d5q0prd912c"; depends=[crsmeta dplyr geodist glue MASS raster reproj rlang sp spatstat_core spatstat_geom traipse viridis]; }; tripEstimation = derive2 { name="tripEstimation"; version="0.0-44"; sha256="1ylpyzlqr6l5haxq4icnlxw6vgvc2lsfz5sm2wqqm4m6h3p0i6s6"; depends=[lattice mgcv rgdal sp zoo]; }; tripack = derive2 { name="tripack"; version="1.3-9.1"; sha256="1ghza4by6shalsnqybn5qgv076dxh59b6vycg9v6ii216zbgi0kz"; depends=[]; }; triplot = derive2 { name="triplot"; version="1.3.0"; sha256="1apmdpxdnnmjyi7gcrjrqw44iqphr84nbgw0nfxcspzjgxhc81l1"; depends=[DALEX ggdendro ggplot2 glmnet patchwork]; }; @@ -17977,7 +18092,6 @@ in with self; { trust = derive2 { name="trust"; version="0.1-8"; sha256="1b6wsx4vybr5952ii3ska6jbcb3654iibz83n645khxfca5k8blm"; depends=[]; }; trustOptim = derive2 { name="trustOptim"; version="0.8.7.3"; sha256="11cx90zq9987i7kc86kxbip6c75bmw51shlwq2x9ywhybzk8vxl8"; depends=[Matrix Rcpp RcppEigen]; }; trustedtimestamping = derive2 { name="trustedtimestamping"; version="0.2.6"; sha256="1rx7ypy331mq5ni5hxhqcfnicvwdgg9j2pm3aj097a5hhigibdrq"; depends=[digest httr jsonlite]; }; - truthiness = derive2 { name="truthiness"; version="1.2.5"; sha256="0cssqlrilx2lglr2f53yysqgf604g4y326ijf8avlg6v5l6hlcr1"; depends=[dplyr DT emmeans ez forcats ggplot2 lme4 magrittr MASS ordinal purrr Rdpack readr rmarkdown tibble tidyr]; }; tryCatchLog = derive2 { name="tryCatchLog"; version="1.3.1"; sha256="0k40a48qzwmardjnkf0h5s5zryivzvdanz61kxdqdfqlil19ma0d"; depends=[]; }; ts_extend = derive2 { name="ts.extend"; version="0.1.1"; sha256="03b358nywx0zynb6006886mzvz1mbbaim6b5m641drklh6k0l6r1"; depends=[]; }; ts2net = derive2 { name="ts2net"; version="0.1.0"; sha256="0f45xnvg09qvcc202dfr9d1a29909gmz863pjyq78mhjj0glijqw"; depends=[dbscan dtw igraph infotheo minerva mmpp nonlinearTseries scales zoo]; }; @@ -17996,7 +18110,7 @@ in with self; { tsdf = derive2 { name="tsdf"; version="1.1-8"; sha256="00s0aiis88611xsq9px61f9gwprp803wcvi5milvc7qckrh1kw0z"; depends=[]; }; tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; tsensembler = derive2 { name="tsensembler"; version="0.1.0"; sha256="0amb3dn96hdgy5a0j6s43mf82cdjwbz8dhz3yrjlr07nknxzirzi"; depends=[Cubist doParallel earth foreach gbm glmnet kernlab monmlp pls ranger RcppRoll softImpute xgboost xts zoo]; }; - tsentiment = derive2 { name="tsentiment"; version="1.0.4"; sha256="173m4ry58rz5cgffrwzxd9wr22w2ziny82zzby958w6vpyysdsc0"; depends=[dplyr ggplot2 httr progress reshape2 stringi syuzhet tibble tidytext wordcloud wordcloud2]; }; + tsentiment = derive2 { name="tsentiment"; version="1.0.5"; sha256="1sa1xy1v7p166r3sc3mg66zzw72n8vsy8q636knhyl71zzbvacsw"; depends=[dplyr ggplot2 httr reshape2 stringi syuzhet tibble tidytext wordcloud]; }; tseries = derive2 { name="tseries"; version="0.10-52"; sha256="0icgmng0dzvfkkn6dam74wvlz8g0cy46wkw57f5lpd5kxpdwi6ck"; depends=[quadprog quantmod zoo]; }; tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13.1"; sha256="0qfrrzd0h8n9zp7wj5fl88wkiv22fs5zy8x509g316j0avm5zjr3"; depends=[deSolve]; }; tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.6-0"; sha256="04clfkpkiy5p5nxcq59c7f4v1llj1d95lvck23h1px50lvb993fv"; depends=[cubature ks]; }; @@ -18004,7 +18118,6 @@ in with self; { tsfgrnn = derive2 { name="tsfgrnn"; version="1.0.2"; sha256="17m9k8nvfhpk11g7f64c32sb4r6vdcgci93apcr89y8dkbw4n5ga"; depends=[ggplot2 Rcpp]; }; tsfknn = derive2 { name="tsfknn"; version="0.5.0"; sha256="0rl3g0qs787cy67vq25aygb9mxhd63p66a1i4p2zi906cx4xj4b3"; depends=[ggplot2 Rcpp]; }; tsfngm = derive2 { name="tsfngm"; version="0.1.0"; sha256="1wx1imbvnc2bjvfal45zhgpz296fiydqffb0rk428xpjgp2dj6p7"; depends=[]; }; - tsgui = derive2 { name="tsgui"; version="0.2.1"; sha256="0crm2ripxpjaz1cqz9lkj3y9xj4ia0hlq4lvz1rff0wq6d5w79dn"; depends=[RandomFieldsUtils tcltk2 tkrplot]; }; tsiR = derive2 { name="tsiR"; version="0.4.3"; sha256="0xzcfdad1z8336wnsrk9sy21psd898wwkdkndq7dshqwp2rj2kxl"; depends=[ggplot2 kernlab reshape2]; }; tsibble = derive2 { name="tsibble"; version="1.1.3"; sha256="0qb5ksj366l253rhkjpq7cpancplx2q81xn95b4ddwpnz3p16hhz"; depends=[anytime dplyr ellipsis generics lifecycle lubridate rlang tibble tidyselect vctrs]; }; tsibbledata = derive2 { name="tsibbledata"; version="0.4.1"; sha256="1wh0i5rm5cp4f9hqgxjlhbsj3ag6wgdq38fpzc0gdsl84m6xvwnh"; depends=[rappdirs tsibble vctrs]; }; @@ -18027,7 +18140,7 @@ in with self; { tsxtreme = derive2 { name="tsxtreme"; version="0.3.3"; sha256="1725rkdq377z3c06hc2g9l0dwgfy5gz3pgygpz1pyy83s5c7j869"; depends=[evd MASS mvtnorm tictoc]; }; ttScreening = derive2 { name="ttScreening"; version="1.6"; sha256="1i8c9l3sdkzl99zxxyfqm84vkh6wjdh3a32l5q8ikf74g9dhxkf4"; depends=[corpcor limma MASS matrixStats simsalapar sva]; }; ttTensor = derive2 { name="ttTensor"; version="1.0.1"; sha256="0ryfxx4chnc10cl5h5cb4hnvzf2cm64k8m36l4qbjz4f1vkw0a36"; depends=[Matrix PTAk rTensor tensorr]; }; - ttbary = derive2 { name="ttbary"; version="0.3-0"; sha256="116n07w944w9j4hzy0vg3hldlzdd4csprzqmbsry36cygvh8as2a"; depends=[Rcpp spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; }; + ttbary = derive2 { name="ttbary"; version="0.3-1"; sha256="0dp9jjl33p0r67nk7qxwjkniy7pxp8w7xbymm61hl29hqqbpmszh"; depends=[Rcpp spatstat spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random]; }; ttbbeer = derive2 { name="ttbbeer"; version="1.1.0"; sha256="1azffcizm3460kxvrxxkilc6qxspyi247x8drrw5ywfichwhmdhc"; depends=[]; }; ttcg = derive2 { name="ttcg"; version="1.0.1"; sha256="1kha6jp89r8qx5rycwlcl1dprw33j71yng03k9l7q3b7d4lz4bg5"; depends=[numDeriv]; }; ttdo = derive2 { name="ttdo"; version="0.0.8"; sha256="184rfmrd4y63j8i62w8cy7d6cqgvlhj8h6zgjzsvad9l6pq2hmb3"; depends=[diffobj tinytest]; }; @@ -18050,7 +18163,6 @@ in with self; { tuple = derive2 { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; }; turboEM = derive2 { name="turboEM"; version="2021.1"; sha256="17j308qla2680k0j8cf2c4v1jlsm21z93zglncmw3n0isa7cwjly"; depends=[doParallel foreach iterators numDeriv quantreg]; }; turner = derive2 { name="turner"; version="0.1.7"; sha256="1xckb750hbfmzhvabj0lzrsscib7g187b44ag831z58zvawwh772"; depends=[tester]; }; - tutorial = derive2 { name="tutorial"; version="0.4.3"; sha256="0sxdlpw0w4azlaxdlk36ycrric6pbj2zi4nyv26pgsp0cr1hrx6r"; depends=[base64enc knitr markdown rjson]; }; tvR = derive2 { name="tvR"; version="0.3.2"; sha256="1i20z09f714fyn3ipcn9i5g4dx7cyjfkyjqzyqzqapkg0m9ny91m"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; tvReg = derive2 { name="tvReg"; version="0.5.7"; sha256="0q34266qk621cna5sf87yyp2jf9s9zc945bm2qsl8mh2ag0wii86"; depends=[bvarsv MASS Matrix plm systemfit vars]; }; tvem = derive2 { name="tvem"; version="1.3.1"; sha256="1hrjl5kbp0wx7a4aa8bbvf5sdrxcvxsf3318ckgl85w923i8a44k"; depends=[mgcv]; }; @@ -18059,7 +18171,7 @@ in with self; { tvm = derive2 { name="tvm"; version="0.5.0"; sha256="1disznln4xgkr9q6sj978nadbwg43xv28fq3r3zyy6icg4x9h6gs"; depends=[ggplot2 reshape2 scales]; }; tvmComp = derive2 { name="tvmComp"; version="1.0.2"; sha256="1q5c3ahdjjz4h19pwq0dpasv87mzbyqs0hadlfx7mpmncdgyqcqq"; depends=[Rdpack]; }; tvmediation = derive2 { name="tvmediation"; version="1.1.0"; sha256="082lw56yhlb6nj7srdinim1hgvb8szzb3gp2y985115qgdypbv6n"; depends=[dplyr ggplot2 locpol]; }; - tvthemes = derive2 { name="tvthemes"; version="1.3.1"; sha256="0ig2pb0qdc9a0hm7j8860dj2ksqnsds2nslbpzf1ykqwfhnfgmsb"; depends=[extrafont ggplot2 magick scales]; }; + tvthemes = derive2 { name="tvthemes"; version="1.3.2"; sha256="15m1g191nw1bfz1jgcab316c8jzvam2zc5vnlz8k9b6lcqqnv3nl"; depends=[extrafont ggplot2 magick scales]; }; twang = derive2 { name="twang"; version="2.5"; sha256="1raczkxbkikwx9gi4p8nzgazqxa41ilpqvfjc07nwkvyqlkmadgw"; depends=[data_table gbm ggplot2 lattice latticeExtra MatrixModels survey xgboost xtable]; }; twangContinuous = derive2 { name="twangContinuous"; version="1.0.0"; sha256="0bn1i9nid97irn820591ml3556bbmg6pw2qhm9k9vqgnqmnhcfnq"; depends=[gbm lattice Rcpp survey xtable]; }; twangMediation = derive2 { name="twangMediation"; version="1.2"; sha256="12dj98sqggcqzlkcmn2fmxv81cankp5hmswz07rwb2sn6awlq9jg"; depends=[gbm lattice latticeExtra survey twang]; }; @@ -18075,7 +18187,7 @@ in with self; { twitteradsR = derive2 { name="twitteradsR"; version="0.1.0"; sha256="15r6l9rf05xdr1m9zkmsg1v9vrdsyz480jqkgvx7yn27546z5653"; depends=[jsonlite]; }; twitterwidget = derive2 { name="twitterwidget"; version="0.1.1"; sha256="1dlhydhy69284gg3jsxwa6h8cp1rlkg1j8h8z1fjz4fyy1p5xrpv"; depends=[htmlwidgets]; }; twl = derive2 { name="twl"; version="1.0"; sha256="0n2r40ddsr5zpzi92k7f0lvq78k5cmfbqzjxvr78hwq6j13dhar3"; depends=[corrplot data_table MCMCpack Rfast]; }; - twn = derive2 { name="twn"; version="0.2.2"; sha256="0s1yn5jvcb2vds6r3f3xsfnc01lzljljy606kf22lsfqcrrrk5vr"; depends=[crayon dplyr rlang stringr tibble]; }; + twn = derive2 { name="twn"; version="0.2.3"; sha256="1g73y0vkfhz2lvfcfxl3lrv6zj1gcymrxdihk7a2hpxnx1bfxjx1"; depends=[crayon dplyr rlang stringr tibble]; }; twopartm = derive2 { name="twopartm"; version="0.1.0"; sha256="0hncdfc9l1m31158kk5jdciqasv8nqr2q7cam38wi2wclqpk5r5v"; depends=[data_table MASS]; }; twosamples = derive2 { name="twosamples"; version="2.0.0"; sha256="1ap856n3gjjd5jr51gcgq70hrv1791fkhwz2x939wd89nr6xwzx7"; depends=[cpp11]; }; twosigma = derive2 { name="twosigma"; version="1.0.2"; sha256="0b73qcna55gmfxz1lzd987j28m7g8642s9wgzpndx3850q61yfli"; depends=[doParallel glmmTMB multcomp pbapply pscl]; }; @@ -18099,16 +18211,16 @@ in with self; { uaparserjs = derive2 { name="uaparserjs"; version="0.3.5"; sha256="0v24smgsz1p2wa23mc2llx7dycwmgf7zyxdhwxgwplabpmy3xzhl"; depends=[progress V8]; }; uavRmp = derive2 { name="uavRmp"; version="0.6.0"; sha256="0spa0cv33kdrxzmfn07qnj1j98gxnjmi3v4888xj5v3a1yaa08kw"; depends=[brew data_table exifr geosphere jsonlite link2GI log4r raster rgdal rgeos rlist sf sp zoo]; }; ubiquity = derive2 { name="ubiquity"; version="2.0.0"; sha256="1zjjwpl8zkpr4zvrhsbsj6vpiwy08vs2sw1rpx7aq940v37dvmbz"; depends=[deSolve digest doParallel dplyr flextable foreach ggplot2 knitr magrittr MASS onbrand optimx PKNCA pso readxl rhandsontable rmarkdown scales shiny stringr]; }; - ubms = derive2 { name="ubms"; version="1.1.0"; sha256="016rdjba3h2hm6ps4jrnqzy1hwm0nmn3yq922dbfw8396qvmr2zf"; depends=[BH ggplot2 gridExtra lme4 loo Matrix pbapply Rcpp RcppArmadillo RcppEigen RcppParallel RSpectra rstan rstantools StanHeaders unmarked]; }; - uchardet = derive2 { name="uchardet"; version="1.1.0"; sha256="1dnvi45npk7l7sqbv3c1mrg0m7vrrp7iya9kjndcg9x3h0iial9z"; depends=[]; }; + ubms = derive2 { name="ubms"; version="1.2.2"; sha256="0d83i27cc4wlw5pivmkf5msvxyj99yr0fb5fibxa3knfz8hwwaxw"; depends=[BH ggplot2 gridExtra lme4 loo Matrix pbapply Rcpp RcppArmadillo RcppEigen RcppParallel RSpectra rstan rstantools StanHeaders unmarked]; }; + uchardet = derive2 { name="uchardet"; version="1.1.1"; sha256="0m3xy807smqdxhkhd9cwrcf3ljlyvfmnkd7831qzpgcadam2jcdj"; depends=[]; }; ucie = derive2 { name="ucie"; version="1.0.2"; sha256="032anlli29a0iwzmn35afrcs4if5kipplpn8n4qpy1g14hc5zgvd"; depends=[colorspace dplyr geometry pracma ptinpoly remotes rgl]; }; uclust = derive2 { name="uclust"; version="1.0.0"; sha256="10i78fc81sy635mi8nn1gmryvcbqq7f99ws6byqlnhwyw79qmvb1"; depends=[dendextend robcor]; }; ucminf = derive2 { name="ucminf"; version="1.1-4.1"; sha256="1cknk42allcflgk16i4gwi4a389idrxqz6y2w8i7s9mdfgrvd981"; depends=[]; }; - udpipe = derive2 { name="udpipe"; version="0.8.9"; sha256="1pdxfr3523imyygm26zhisy3x0a8ay6wd4ndda93ic0lqxb5lapd"; depends=[data_table Matrix Rcpp]; }; + udpipe = derive2 { name="udpipe"; version="0.8.10"; sha256="0ipns4wzp7j0ms6i2mfkfkgqqd5cqbrv79valiz6r7ffx4yxys14"; depends=[data_table Matrix Rcpp]; }; udunits2 = derive2 { name="udunits2"; version="0.13.2.1"; sha256="00prsy8m41v1camcsz94d7gm8qab2mdnwl3x0dyhz4r49b02jm4z"; depends=[]; }; ufRisk = derive2 { name="ufRisk"; version="1.0.6"; sha256="190rjqhmm7r9yy4f5gyk2p8k250xnnkkssi3nfgv79w62z2hv2qh"; depends=[esemifar fracdiff rugarch smoots]; }; ufs = derive2 { name="ufs"; version="0.5.2"; sha256="1lqnib0pizx97isqbr4v2r4qp7fph6znbd5arbjnxmlh2wblfbsl"; depends=[digest diptest dplyr ggplot2 ggrepel ggridges gridExtra gtable htmltools kableExtra knitr pander plyr pwr rmdpartials scales SuppDists]; }; - ugatsdb = derive2 { name="ugatsdb"; version="0.2.2"; sha256="0f5fgys80b5nlj5f8jadh5jpylhhb5hsknrsspfac5amncmb0yyv"; depends=[collapse data_table DBI RMySQL writexl]; }; + ugatsdb = derive2 { name="ugatsdb"; version="0.2.3"; sha256="098dzh6slaxj22730nm9g6b5653600ms2ahxr87iblh5xq0dcidl"; depends=[collapse data_table DBI RMySQL writexl]; }; ugomquantreg = derive2 { name="ugomquantreg"; version="1.0.0"; sha256="1a5vc1qgy3kp1by5bp296w980lkxcghzzxibhap2jg06jnzjfcq8"; depends=[gamlss gamlss_dist pracma Rcpp]; }; ui = derive2 { name="ui"; version="0.1.1"; sha256="15hcdzaj75ip6j7yglx8rqhp4y3yf3aw5cpbjgk1mjr4cya7lvzi"; depends=[Matrix maxLik mvtnorm numDeriv]; }; uiucthemes = derive2 { name="uiucthemes"; version="0.3.1"; sha256="1faggg8hiqw4pblq5r3m9wi3x5m6kbjq0flf88mqa993v9rpdrf6"; depends=[rmarkdown xaringan]; }; @@ -18137,18 +18249,17 @@ in with self; { uniah = derive2 { name="uniah"; version="1.1"; sha256="0yjjn08aizqq6j5f9pnsjwdfqdmqrj1s8vjja97gzisfy1xscwfa"; depends=[ahaz Iso survival]; }; unifDAG = derive2 { name="unifDAG"; version="1.0.3"; sha256="052qjrnj04imhj6i62k8jdx9rs8r70n0qrmd2z45x4fimn5py6j5"; depends=[gmp graph]; }; unifed = derive2 { name="unifed"; version="1.1.6"; sha256="0wy2hasgkzw08l50qq30wb62i1q4skc3zccipv8pm911qlldk3sr"; depends=[]; }; - unifir = derive2 { name="unifir"; version="0.2.2"; sha256="0d9wb0af2sjipz47aqgy78f7ddbxs4qa7imwr2z46gigkfa8vb5s"; depends=[glue proceduralnames R6]; }; + unifir = derive2 { name="unifir"; version="0.2.3"; sha256="1l563qxym1srjj5xzcz8jks3577jpk33k1gb95lcyg7r9bh35j85"; depends=[glue proceduralnames R6]; }; uniformly = derive2 { name="uniformly"; version="0.2.0"; sha256="1xfwnklzmz72kp5qsb5zh3p6lwngpiaw5b4drjd41h9xvxdb3dyd"; depends=[pgnorm]; }; - unikn = derive2 { name="unikn"; version="0.6.0"; sha256="0qvqj80cqp90qvm2nacl49mnyi0ay91wngr4wk7xsrq67nv4vf22"; depends=[crayon ggplot2]; }; + unikn = derive2 { name="unikn"; version="0.7.0"; sha256="06y2jsx8hjbxdjm03w4ipjpxxp65fj10l2p3zjck82lyhw1llxxw"; depends=[crayon ggplot2]; }; unine = derive2 { name="unine"; version="0.2.0"; sha256="051dk8fss19h4d9815a7994krr1s3n5q0pxq9gir6zns0vvn05pw"; depends=[Rcpp]; }; uniqtag = derive2 { name="uniqtag"; version="1.0.1"; sha256="0vmd5w4p2qvpg6djddl92q9d3c6kiq0rjv6hq6j7x1b1zwqhgfi5"; depends=[]; }; unisensR = derive2 { name="unisensR"; version="0.3.3"; sha256="1pqfb8i3rj64l9hh1bn9mm78wlfqphgrlp7zrydznqy88f4jwgvy"; depends=[hexView vroom XML]; }; uniset = derive2 { name="uniset"; version="0.3.1"; sha256="1lpwsx1l6x186aj7wl5kvfmc5mp4g95p5h69alg8dn1sns84zqjs"; depends=[easycsv]; }; - uniswappeR = derive2 { name="uniswappeR"; version="0.6.0"; sha256="0n180v0kya6djkd3zngn4zvqzga3dhav41r94ckbzb1yww5ck1vd"; depends=[dplyr ggplot2 ghql httr jsonlite lubridate patchwork purrr reticulate rlang scales tibble tidyr]; }; unitedR = derive2 { name="unitedR"; version="0.4"; sha256="0h4i814awb8419693jz3x5cyhs2x6y5flmz339bg6ivmg13d9h3s"; depends=[plyr]; }; unitizer = derive2 { name="unitizer"; version="1.4.18"; sha256="1higz77mxyci56h3z5pizkbyqdbkf65lfxf8zm36gi1h04czxrnr"; depends=[crayon diffobj]; }; unitquantreg = derive2 { name="unitquantreg"; version="0.0.5"; sha256="1sb9gh0sdhs2bmybqkbnr82ymfiq1317iiihbgj56xxa4rwx13mg"; depends=[Formula MASS numDeriv optimx quantreg Rcpp]; }; - units = derive2 { name="units"; version="0.8-0"; sha256="06mjprqi06xprj6185k5cmrrdl025x0pd1r6a4x3s74ciq9zwilw"; depends=[Rcpp]; }; + units = derive2 { name="units"; version="0.8-1"; sha256="16ndhl4hkcll9r5vh8flp2bc3mavddfz8g6sqddj15scdcjbmqfk"; depends=[Rcpp]; }; unittest = derive2 { name="unittest"; version="1.5-3"; sha256="0lpihlga16qklha3i8j4yx9dkmvmsqp8iai0arza97cx63971xwx"; depends=[]; }; univOutl = derive2 { name="univOutl"; version="0.4"; sha256="1kp014bhs8v02fp7misrj4fpfp2na9lg45p5zqvlfaypnm5imsr9"; depends=[Hmisc robustbase]; }; unival = derive2 { name="unival"; version="1.1.0"; sha256="0j7fl77my2273k72s8k9v5pcb85swxfipjxmk4vw487i7aq8b1nq"; depends=[psych]; }; @@ -18164,7 +18275,7 @@ in with self; { unstruwwel = derive2 { name="unstruwwel"; version="0.2.0"; sha256="1s8vfmh1lafb244r0bwp4m0r9x5la95lglxqvhb4sq9wmah04ka7"; depends=[assertthat dplyr lubridate magrittr purrr R6 rlang stringr tibble tidyr]; }; unsystation = derive2 { name="unsystation"; version="0.2.0"; sha256="02da7wzzk5bwd475i67v5x04ay2bn5yd5xffl1asqcqxcc5sy0m8"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; untb = derive2 { name="untb"; version="1.7-4"; sha256="1i7m4vfslsix98dwx4jlrsldm7fhhfp25gr7aapcxqxms7ryaby6"; depends=[Brobdingnag partitions polynom]; }; - unusualprofile = derive2 { name="unusualprofile"; version="0.1.0"; sha256="0dasknh8hwbvc530d8i0xfizqxygrlz3w2bdnsgdd9sf84flqajl"; depends=[dplyr ggnormalviolin ggplot2 lavaan lifecycle magrittr patchwork purrr ragg rlang scales simstandard tibble tidyr]; }; + unusualprofile = derive2 { name="unusualprofile"; version="0.1.1"; sha256="0p429w51jb3cz3gkxdzn55pya0xxwilrg4z7hkw0i6jijpwvisia"; depends=[dplyr ggnormalviolin ggplot2 magrittr purrr rlang tibble tidyr]; }; unvotes = derive2 { name="unvotes"; version="0.3.0"; sha256="1vfyvwqfbxp29x2a0sqng6l5pkp2hc3hadp95ysnpannnsd6x0jw"; depends=[]; }; updater = derive2 { name="updater"; version="0.1.1"; sha256="035js05xzs0i3xs6bizm5ixiiylzhdjkr8z0yijiqiqxw38w6h2l"; depends=[cli renv]; }; updog = derive2 { name="updog"; version="2.1.3"; sha256="1i7dc8msky5g658iwcvdvda2m0ya9cnbzm9d565l01lf184dfhhk"; depends=[assertthat doFuture doRNG foreach future ggplot2 ggthemes iterators Rcpp RcppArmadillo reshape2]; }; @@ -18178,7 +18289,7 @@ in with self; { urlshorteneR = derive2 { name="urlshorteneR"; version="1.5.7"; sha256="0zfvcwcy2ykvkbnqgxhzxf99shcby81cx8fjbmy6b07rj9407arj"; depends=[assertthat cli clipr httr jsonlite lubridate miniUI shiny stringr]; }; urltools = derive2 { name="urltools"; version="1.7.3"; sha256="04x3my655dd287cbsszbnf75q0swmjlxxrblcsay7a8n3df3a830"; depends=[Rcpp triebeard]; }; uroot = derive2 { name="uroot"; version="2.1-2"; sha256="0dsb1vdr2bwy64v889svhvkadg5jl9cl77mfiw79vl18b7ixjzxx"; depends=[]; }; - ursa = derive2 { name="ursa"; version="3.9.7"; sha256="0z8sld9x4xs7dfhv462v47732md37hvpxv6iq3lm0xzbqc3adxx7"; depends=[jpeg png rgdal]; }; + ursa = derive2 { name="ursa"; version="3.9.8"; sha256="0700kspd64mmk9nrfs49maxlj1x2hysfvkyhn275lp8498am7yka"; depends=[jpeg png rgdal]; }; us_census_geoheader = derive2 { name="us.census.geoheader"; version="1.0.2"; sha256="17mss1ggaqkd0ac7g9chgqdrpi5xlbfkxsm1jvj48rp2jfwpp4jw"; depends=[tibble]; }; usa = derive2 { name="usa"; version="0.1.0"; sha256="0scdrd6b48n019f7qp77rrkqgmapnrknalq0hml1cy7m43llqf6d"; depends=[tibble]; }; uscoauditlog = derive2 { name="uscoauditlog"; version="1.0.3"; sha256="156by8lans2jk8kjll88ljc6z5idgvqwkvrgdwjkr4l4xnsz0sif"; depends=[openxlsx readxl stringr]; }; @@ -18193,18 +18304,19 @@ in with self; { usethis = derive2 { name="usethis"; version="2.1.6"; sha256="0638dzl4nm4c36990sf2biy74hjr2fzlqzfb98fsqrbhaw3ngp1i"; depends=[cli clipr crayon curl desc fs gert gh glue jsonlite lifecycle purrr rappdirs rlang rprojroot rstudioapi whisker withr yaml]; }; usfertilizer = derive2 { name="usfertilizer"; version="0.1.5"; sha256="05zjn39hqjjzzp4v4b1zbqq59205s7k0kikms951h57kbyvjz6vk"; depends=[tidyverse]; }; ushr = derive2 { name="ushr"; version="0.2.3"; sha256="1ygyqgxw849165lpk81f114kgx9015b9a9dngavjy3ffqzrbb41k"; depends=[dplyr ggplot2 tidyr]; }; - usincometaxes = derive2 { name="usincometaxes"; version="0.5.3"; sha256="0m816hw9hczr32adq49dl5d78r4imc97mrbyh3npdpwpzyrakhay"; depends=[httr tibble tidyselect V8 vroom]; }; + usincometaxes = derive2 { name="usincometaxes"; version="0.5.4"; sha256="1ccga22afagdlyyw33p7rk8lr8l54li64vqav7yyqc7hz7r1mzbd"; depends=[httr tibble tidyselect V8 vroom]; }; uskewFactors = derive2 { name="uskewFactors"; version="2.0"; sha256="0ndi5987ak8sa7krgiglsibfg0k7z9j8fg47hg1m8ar0sq4r1yj6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; usl = derive2 { name="usl"; version="3.0.3"; sha256="0hql4bc40xa62r465lm4x14yf8dbhsl046i5k8xlq1qr93cw6pnx"; depends=[nlsr]; }; - usmap = derive2 { name="usmap"; version="0.6.0"; sha256="1jdn9rl6kkfmr9d6wrg1673nr7xh5h14ynv2mx64xcn581c9jzis"; depends=[usmapdata]; }; + usmap = derive2 { name="usmap"; version="0.6.1"; sha256="1q27xxvfrwin61jxba2k91brgcam7hqq5yv5hha4f8s7h3rqam6b"; depends=[rlang usmapdata]; }; usmapdata = derive2 { name="usmapdata"; version="0.1.0"; sha256="13a4bj6ixqzfwm60r2c3i9zy96mr2hk77n720zs5i0i16acfnxav"; depends=[]; }; - ustfd = derive2 { name="ustfd"; version="0.1.1"; sha256="0r8vdh1gak0vkqfm2cjcc43jf8jpin9kvv9rv2zfzsdkylkpcpxd"; depends=[dplyr httr lubridate purrr readr]; }; + ussherR = derive2 { name="ussherR"; version="1.10"; sha256="0awhric6xrhgv4wb9saq7jyikd3h74i6vlq3aqip4i1m9j3ym3k1"; depends=[]; }; + ustfd = derive2 { name="ustfd"; version="0.2.0"; sha256="1q2i1jlvgdyvx55r3h3f0g6zqyv197yyfkkiaixy4kzdzp9rxy9d"; depends=[dplyr httr lubridate purrr readr rlang tibble]; }; ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; utc = derive2 { name="utc"; version="0.1.5"; sha256="1lhm5rhr78cxp3cz5n6j2zkhjphj7csk026xvvhkjqdi39rrq6i4"; depends=[]; }; utf8 = derive2 { name="utf8"; version="1.2.2"; sha256="1x6qg19z4qih9lk3mvnmx0vailm1khp5lylw4hlwz6rssj3yw6m7"; depends=[]; }; - utile_tables = derive2 { name="utile.tables"; version="0.2.1"; sha256="0bj3rg4f9dby7qzf0m95dg626ws4nz5v2vn3m50x8g3pqq8m7lmp"; depends=[dplyr purrr rlang tidyselect utile_tools]; }; - utile_tools = derive2 { name="utile.tools"; version="0.2.7"; sha256="1hclxfq7ccrhsirpnpl3kpybd2zn4dc4pk49adqfik5lg9xi8kxh"; depends=[lubridate purrr vctrs]; }; - utile_visuals = derive2 { name="utile.visuals"; version="0.3.1"; sha256="1j13pvzgi8rv38clxl421ji3c47vg8scragg246xpgmd24yk64a5"; depends=[dplyr ggplot2 gridExtra purrr]; }; + utile_tables = derive2 { name="utile.tables"; version="0.2.2"; sha256="139y2a60kxj9x4nx2rb3cd7q69if370vzyikbrnf36h8v62dcr3q"; depends=[dplyr purrr rlang tidyselect utile_tools]; }; + utile_tools = derive2 { name="utile.tools"; version="0.2.8"; sha256="1zlib1ydy8919xngp7rzz7shixwqpsk3ljgjyqzcxa5y1gyzb461"; depends=[lubridate purrr vctrs]; }; + utile_visuals = derive2 { name="utile.visuals"; version="0.3.2"; sha256="12crzqcap4s0ji9839ykmvp31b5p10c59z95wmklhcsnpc7n3k6w"; depends=[dplyr ggplot2 gridExtra purrr]; }; utilities = derive2 { name="utilities"; version="0.6.1"; sha256="0wcw9gcxd66vhr7vb24y94bgqckfkwvg1rcsxdqaz5r06qn2p9nf"; depends=[]; }; utility = derive2 { name="utility"; version="1.4.5"; sha256="0a11bxyg8la6yvxr04qbhay05jb2ihd7calc1zcisgj43kq6k7xd"; depends=[]; }; utilityFunctionTools = derive2 { name="utilityFunctionTools"; version="0.1.1"; sha256="1225nl83yka31j0adm1210kc89vs3hi9i2pqrykax109sgk0nw97"; depends=[spatstat_geom]; }; @@ -18217,6 +18329,7 @@ in with self; { uwot = derive2 { name="uwot"; version="0.1.14"; sha256="1q4z98w3pkc51vrcpmwaibnwmlm17zjcnh0qlx660wky5ccyh5l0"; depends=[dqrng FNN irlba Matrix Rcpp RcppAnnoy RcppProgress]; }; uxr = derive2 { name="uxr"; version="0.1.2"; sha256="0iasxwxfk52311mb3gikk3j2cs21wssg9yv06bv15dl7zm9sh14i"; depends=[dplyr scales]; }; vICC = derive2 { name="vICC"; version="1.0.0"; sha256="13lcs7wwj1xfbjf3q7r8ssf00jg5hr1vjp2pyw0r42iz7mx47xjv"; depends=[coda ggplot2 nlme Rdpack rjags]; }; + vMF = derive2 { name="vMF"; version="0.0.1"; sha256="1sygiqyzqikrpdiav0117hnv6zynq1d415v73ygjfj4c1v5l05h0"; depends=[BH Rcpp RcppArmadillo]; }; vacuum = derive2 { name="vacuum"; version="0.1.0"; sha256="0cmlvlz83gyga05g71hrnq4kpck9flq0qlhjviqqz9zrmljzin0x"; depends=[dplyr magrittr]; }; vader = derive2 { name="vader"; version="0.2.1"; sha256="1xjak5xlgpk0ds4l825kq90dg6kk5i5al5zmjqjqn8b7xdgix8mf"; depends=[tm]; }; vaersNDvax = derive2 { name="vaersNDvax"; version="1.0.4"; sha256="0hvw7vbxs87c9xkdv3617fkjwz2dbawscbd7dgaixhdhcr3k823a"; depends=[]; }; @@ -18247,6 +18360,7 @@ in with self; { vangogh = derive2 { name="vangogh"; version="0.1.1"; sha256="1ny4dgwkk54pgwgg3lwcv8vcdnizlajdck68ihpzh2s1yz4n38bm"; depends=[ggplot2]; }; vannstats = derive2 { name="vannstats"; version="1.2.7.14"; sha256="06y1h4w6zkvkdh81w5qaf15apk4w3sj86zj54l7fx4g6qddfnqsw"; depends=[car dplyr formula_tools gdata ggplot2 gplots MASS plm purrr rlang rstatix stringr tidyverse]; }; vanquish = derive2 { name="vanquish"; version="1.0.0"; sha256="01di1j36npl7vnyhgsagvyf6j8bxcw867dwf9dgi7l1328s7lf0l"; depends=[changepoint e1071 ggplot2 VGAM]; }; + vapour = derive2 { name="vapour"; version="0.9.2"; sha256="0g7jikkagqnqblyskfsd9wv2czx75v172z6rrdn2bf25m0hwcpw0"; depends=[jsonlite Rcpp]; }; varEst = derive2 { name="varEst"; version="0.1.0"; sha256="0i6nsxl5w4zipzrmdvx8plmxr33n405w2qhks3s7zzs3kcys32v6"; depends=[caret glmnet lm_beta SAM]; }; varImp = derive2 { name="varImp"; version="0.4"; sha256="1bxlfqxi8iiv6raawl9668yhlmbak96ahd0ljzwrilnciqbclc2b"; depends=[measures party]; }; varSel = derive2 { name="varSel"; version="0.2"; sha256="05dk2s4lzd4sxrwsfs2yqsj08qrdrfwx1fs07nb9a8sd0in6vlpj"; depends=[]; }; @@ -18280,8 +18394,8 @@ in with self; { vcmeta = derive2 { name="vcmeta"; version="1.1.0"; sha256="02zfrdrl5ilaa7is1j8189p4f7n8zdy2jyzzh864zm1a4dkii2rk"; depends=[ggplot2 mathjaxr Rdpack]; }; vcov = derive2 { name="vcov"; version="0.0.1"; sha256="1w89mr8dk6436bxap28rszajgm9k7sjfqsr1i4p68dlhw8zk4yq1"; depends=[]; }; vcpen = derive2 { name="vcpen"; version="1.9"; sha256="0gg5ln9r7i8rh91pf7789fic4aah22jc259qyg606bax2w57qmi5"; depends=[knitr Rcpp RcppArmadillo]; }; - vcr = derive2 { name="vcr"; version="1.0.2"; sha256="0d7g67adnjhhaikz61nc3ivl8pzyvsk8ah0a34d8wgxknfva29sb"; depends=[base64enc cpp11 crul httr R6 rprojroot urltools webmockr yaml]; }; - vctrs = derive2 { name="vctrs"; version="0.5.0"; sha256="11pnblg2fpa3lr5hbiyw6w7wvlkdvqw35wxrkffcxnlxqc9jwdvw"; depends=[cli glue lifecycle rlang]; }; + vcr = derive2 { name="vcr"; version="1.2.0"; sha256="12xiw53dba7dcsdfb8c2cg4v6i9jzhf42plw6hwfp9v65bmq3b83"; depends=[base64enc crul httr R6 rprojroot urltools webmockr yaml]; }; + vctrs = derive2 { name="vctrs"; version="0.5.1"; sha256="01yv85rjpn9cz4473m768awrcaif51ffjh29p097c7pj2zvq4ya9"; depends=[cli glue lifecycle rlang]; }; vcvComp = derive2 { name="vcvComp"; version="1.0.2"; sha256="0mip0v8gv358aadc3b4913dcz27kscx3dv15nwns20pan5jvyhv2"; depends=[]; }; vdar = derive2 { name="vdar"; version="0.1.3-2"; sha256="061ahwf8gyjqs5j9mkqnpn7899mivn4qbygnnzihmv065xj5vpd9"; depends=[compositions]; }; vdg = derive2 { name="vdg"; version="1.2.2"; sha256="0fdqmvzw6dd18w653kfvnw16489jpsyl1395xffhm8rz1dqkrhj1"; depends=[ggplot2 gridExtra proxy quantreg]; }; @@ -18297,7 +18411,7 @@ in with self; { vegawidget = derive2 { name="vegawidget"; version="0.4.2"; sha256="0rnr54h11gd2x2llypdvaai6v8z3nk5fbpb7zd0dcy7hh55ncfcs"; depends=[assertthat digest glue htmltools htmlwidgets jsonlite magrittr rlang]; }; vegclust = derive2 { name="vegclust"; version="2.0.2"; sha256="18v1iqgabhsdxi76kvy9wgp9h2i17aw4c43kcki7lzyqiyyql0nx"; depends=[vegan]; }; vegdata = derive2 { name="vegdata"; version="0.9.11.3"; sha256="0fqsgmn1dg91pnr1fm057va67a5qssagm75vf8i00bgva22m9j45"; depends=[curl DBI dbplyr dplyr foreign hoardr httr indicspecies magrittr plyr RCurl RSQLite stringr xml2]; }; - vegperiod = derive2 { name="vegperiod"; version="0.3.1"; sha256="178zp7hw7bicygzl4ql0a9llkmrk4kyszcvvl430pvsc5y6srg75"; depends=[]; }; + vegperiod = derive2 { name="vegperiod"; version="0.4.0"; sha256="0m10m85cf0qk2q2ln1qziqicv79rbjqqi9py18r412j7m43pn013"; depends=[]; }; vegtable = derive2 { name="vegtable"; version="0.1.7"; sha256="1rxc2f4w51p4gr30p56n3shwvknlbqb8wczbs2xxvcf1f823yn38"; depends=[foreign knitr qdapRegex sp stringi taxlist vegdata]; }; vein = derive2 { name="vein"; version="0.9.9"; sha256="06r9235p15qcy4h3i96p4p2qq0sznphs912wirqdiv52i5h1h384"; depends=[cptcity data_table dotCall64 fields sf units]; }; velociraptr = derive2 { name="velociraptr"; version="1.1.0"; sha256="0a67vmv05cxc9f27aqzr6nkgy2mj3fhykwj5nb23qwfqa669a5hi"; depends=[sf]; }; @@ -18310,6 +18424,7 @@ in with self; { verbalisr = derive2 { name="verbalisr"; version="0.4.0"; sha256="17zq2qc361kmd32pfzqgxpgw2z4z1iq831cq85fffdc3nvl3wwx4"; depends=[pedtools ribd]; }; verhoeff = derive2 { name="verhoeff"; version="0.4.0"; sha256="0kpxpl5s5342ajg22cwb7y9ks240drp37q1g67n19krdy6ih14kz"; depends=[]; }; verification = derive2 { name="verification"; version="1.42"; sha256="0pdqvg7cm9gam49lhc2xy42w788hh2zd06apydc95q2gj95xnaiw"; depends=[boot CircStats dtw fields MASS]; }; + vermeulen = derive2 { name="vermeulen"; version="0.1.1"; sha256="10jlgrwpgkfiwlyli6mpd0wavi71h39sj6mklnvfskhnblvqdrz8"; depends=[memoise]; }; versions = derive2 { name="versions"; version="0.3"; sha256="0zm49j785dgv7fyr1yl9q5f0dsk8hhpim5q5bpkgrkzv7pwjribd"; depends=[]; }; versionsort = derive2 { name="versionsort"; version="1.1.0"; sha256="00r0h2iqlfq0nidqbhx4fv29rlppfx43jv2n2zp38lpx5vbqjhnj"; depends=[]; }; vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; }; @@ -18326,16 +18441,16 @@ in with self; { video = derive2 { name="video"; version="0.1.0"; sha256="0ha1wy4vxxaj22qfviqv5w27g5yvf9jjmfy5zw40s78myjjgrqqy"; depends=[htmlwidgets jsonlite shiny]; }; vietnamcode = derive2 { name="vietnamcode"; version="0.1.1"; sha256="0vc0c1fg30afar2dkch5h27b8jbglcd9ja6d5hcypnibqz4c68vz"; depends=[]; }; vietnameseConverter = derive2 { name="vietnameseConverter"; version="0.4.0"; sha256="1bnscv1yz4hr6cvpavdj2gjn6dqy96rbagxl9280a2xxav09mps3"; depends=[gsubfn sf utf8]; }; - viewpoly = derive2 { name="viewpoly"; version="0.3.1"; sha256="1vnh97iqq1k67lxlj4488ymwpd5p9pqvjawiqdi0qj9s2vz4j35d"; depends=[abind config curl dplyr DT ggplot2 ggpubr golem JBrowseR markdown plotly reshape2 shiny shinydashboard shinyjs shinythemes shinyWidgets tidyr vroom]; }; + viewpoly = derive2 { name="viewpoly"; version="0.3.2"; sha256="1say30d46vj67ng5mprhwl02jf9d0kv573j80r05z08szmcm4sxb"; depends=[abind config curl dplyr DT ggplot2 ggpubr golem JBrowseR markdown plotly reshape2 shiny shinydashboard shinyjs shinythemes shinyWidgets tidyr vroom]; }; viking = derive2 { name="viking"; version="1.0.0"; sha256="0ggnp96igmdzp8acyj57mkkd2xd3ixcnakpwp417yzsdqqlg20sf"; depends=[]; }; villager = derive2 { name="villager"; version="1.1.1"; sha256="0g72zpsqi39ax44n3s3x66b1fbgyx6w2wraf531jsy7vj95ivr2p"; depends=[R6 readr uuid]; }; - vimp = derive2 { name="vimp"; version="2.2.5"; sha256="13461pcvyc6rad1rf2ymmkyzcwjxw7g4fs8qd51baljhjnjmifv0"; depends=[boot data_table dplyr magrittr MASS rlang ROCR SuperLearner tibble]; }; + vimp = derive2 { name="vimp"; version="2.3.1"; sha256="1m88zjxv6zjbbln851kwj9wfam59q8z93s6dz6lmga530d7z4xja"; depends=[boot data_table dplyr magrittr MASS rlang ROCR SuperLearner tibble]; }; vimpclust = derive2 { name="vimpclust"; version="0.1.0"; sha256="0ly7piz7q88sh2g7zq5b2pqph9467b4fclgq9amm0m7xc8vrv4f9"; depends=[ggplot2 mclust PCAmixdata Polychrome rlang]; }; vindecodr = derive2 { name="vindecodr"; version="0.1.1"; sha256="0yvchdf90l8lkzyba5wrpma6vjcgf19li159s8s79y8sgp5pyx7p"; depends=[httr]; }; vinereg = derive2 { name="vinereg"; version="0.8.3"; sha256="0d1ibrhjsbjaaz2cd9lg76cjplkys716i689khzaiv4sgbjhwdh1"; depends=[assertthat BH kde1d Rcpp RcppEigen RcppThread rvinecopulib wdm]; }; vines = derive2 { name="vines"; version="1.1.5"; sha256="057d2fdh03cq9kh4vz94arqscahmz14xbr2g59l0vn205lnyilf1"; depends=[ADGofTest copula cubature TSP]; }; violinplotter = derive2 { name="violinplotter"; version="3.0.1"; sha256="1xy57mycdsr9qr48n1jrw0nzwz848r0xcns864d8gyc8zikp3x6a"; depends=[]; }; - vioplot = derive2 { name="vioplot"; version="0.3.7"; sha256="1dmdasp3jldc41233z6r08w3j76vyyp9m3jrj7n4ahk48yd5siq6"; depends=[sm zoo]; }; + vioplot = derive2 { name="vioplot"; version="0.4.0"; sha256="1db7g0378jbcd6ssb7afff4y4r0v472qnb625hfwixx4wf1v8aap"; depends=[sm zoo]; }; vip = derive2 { name="vip"; version="0.3.2"; sha256="1qsvyfms79sn46jdmq7q5r0d6gwjqhr9pll1y776rx0bj7vx1ax5"; depends=[ggplot2 gridExtra magrittr plyr tibble]; }; vipor = derive2 { name="vipor"; version="0.4.5"; sha256="112gc0d7f8iavgf56pnzfxb7hy75yhd0zlyjzshdcfbnqcd2a6bx"; depends=[]; }; viridis = derive2 { name="viridis"; version="0.6.2"; sha256="048kwhbhd49g86cq11fl7vm0whwhjl5gs9xjn040lwcjv78qrdb9"; depends=[ggplot2 gridExtra viridisLite]; }; @@ -18357,7 +18472,7 @@ in with self; { visit = derive2 { name="visit"; version="2.1"; sha256="0kkspih7m18g5pqlwrxpgjdwqxpp23c3xyvcnvv247abl9aq81rd"; depends=[BH Rcpp RcppEigen rstan sqldf StanHeaders]; }; visreg = derive2 { name="visreg"; version="2.7.0"; sha256="070yhyxxh3w16i54k790n47bgcjn4b10b6g1z553x6afjc3l3a6d"; depends=[lattice]; }; vistime = derive2 { name="vistime"; version="1.2.3"; sha256="18gqx71mpjsccfnab11j3g8wl11x2sk7bbjbcpi23qsk5d7sy112"; depends=[assertive_types ggplot2 ggrepel plotly RColorBrewer rlang]; }; - vistla = derive2 { name="vistla"; version="1.0.0"; sha256="1cbhx2kc5ha25hv0y3hq73iivvq8j96128c4r03hl9j853374wap"; depends=[]; }; + vistla = derive2 { name="vistla"; version="1.0.1"; sha256="1x5iighpdx1mf3gips1b5j39z2f52kjs2dd3b3l58v391j4q36sx"; depends=[]; }; vistributions = derive2 { name="vistributions"; version="0.1.2"; sha256="1nzkbyqks38n7gp55iqhrlxqyfwxk4fvqzi9vsb45h0m0hlmwhxr"; depends=[ggplot2 magrittr]; }; visualFields = derive2 { name="visualFields"; version="1.0.1"; sha256="1z62xappwjdv9f7ql5spydkb626rdj3hvpvzy3d71fwm0y3qwki3"; depends=[boot combinat deldir dplyr DT gtools Hmisc htmlTable oro_dicom plotrix polyclip pracma rlang shiny shinyjs XML]; }; visualize = derive2 { name="visualize"; version="4.4.0"; sha256="1k3jpvj1yysxc4g1a1w3m1y91104aqxqv8jh9qdd23gwy7a29525"; depends=[]; }; @@ -18384,7 +18499,7 @@ in with self; { volcano3D = derive2 { name="volcano3D"; version="2.0.8"; sha256="08qxp9bgm0dbndv1c91xpl0yajmyrxbpss0ga3c47ldyhc0iq7sd"; depends=[ggplot2 ggpubr htmlwidgets magrittr matrixTests plotly Rfast rlang]; }; volesti = derive2 { name="volesti"; version="1.1.2-3"; sha256="1qisar6q0fk4p327mai0zfj57dn0k4vkkamd2pkx1cx3wi0izq0h"; depends=[BH Rcpp RcppEigen]; }; volleystat = derive2 { name="volleystat"; version="0.2.0"; sha256="0n1r0bvvmba21cs3qgpnw9jxpgl2n82fhxa40sa1w2gav5rch5i6"; depends=[]; }; - voluModel = derive2 { name="voluModel"; version="0.1.6"; sha256="0v8b9icr4sbfrbcv7skrwvgz7z2mk9bf9n5sqyl7wycbbgjim6x5"; depends=[dismo dplyr fields ggplot2 ggtext latticeExtra rangeBuilder raster rgeos sp terra viridisLite]; }; + voluModel = derive2 { name="voluModel"; version="0.1.8"; sha256="1vaqwavjjs1ff32l5zxhczb72b5f7ls09v2s9z4vrnjajpf5av5g"; depends=[dismo dplyr fields ggplot2 ggtext latticeExtra rangeBuilder raster sf terra viridisLite]; }; voronoiTreemap = derive2 { name="voronoiTreemap"; version="0.2.0"; sha256="1wvnqdrvba4ss4f3k8gzb720irdq2brv2aaq16ywifv8fnjf02r3"; depends=[data_tree DT htmlwidgets rlang shiny shinyjs]; }; vortexRdata = derive2 { name="vortexRdata"; version="1.0.5"; sha256="0b47q3aslz4110a1bfaa103i098y2ngzrjh01rwasq3gd6xbif9n"; depends=[]; }; voson_tcn = derive2 { name="voson.tcn"; version="0.5.0"; sha256="1fylp5770by5ybpda6n8c3y8n7zsmc62f5q11k0ndh5kp7ka11cb"; depends=[dplyr httr jsonlite openssl progress rlang stringr tibble tidyr]; }; @@ -18406,11 +18521,11 @@ in with self; { vscc = derive2 { name="vscc"; version="0.4"; sha256="0ym9wy661d6m2a9drix5jb6r2sm6kqs314yc46qgq7qmdscdw52b"; depends=[mclust teigen]; }; vsd = derive2 { name="vsd"; version="0.1.0"; sha256="18whnvary4glblzx1vxf3yzsllnnnbnyijwhbw7bi3agppnwrf22"; depends=[dplyr flexsurv ggplot2 ggpubr magrittr muhaz survival survminer]; }; vsgoftest = derive2 { name="vsgoftest"; version="1.0-1"; sha256="0vypi4cf04bljmx3jwq3ixs86ivd6p7a825ik189y71fyqg9g70v"; depends=[fitdistrplus Rcpp]; }; - vsp = derive2 { name="vsp"; version="0.1.0"; sha256="0fa3fdjhq59gpx0ac38ska0sfhq07g9x3vhbvrvlpc18kxwj5mzh"; depends=[ggplot2 glue invertiforms LRMF3 magrittr Matrix rlang RSpectra tibble withr]; }; + vsp = derive2 { name="vsp"; version="0.1.1"; sha256="0aa3vqzazh0x5irbmqh9ac1xiprwnbgbrjl9bybxzynl91hwg9yw"; depends=[ggplot2 glue invertiforms LRMF3 magrittr Matrix rlang RSpectra tibble withr]; }; vstsr = derive2 { name="vstsr"; version="1.1.0"; sha256="071nfxkwwpbp2d8khxq7d1pp268pa1fcfj619bs6xwg4wk9srr3k"; depends=[httr jsonlite R6 RCurl]; }; - vtable = derive2 { name="vtable"; version="1.3.4"; sha256="1b26kqdvvp8d0467b3x7jhpk01lcf1jyfikc7lzn4qs60q0ndgwl"; depends=[haven kableExtra knitr rstudioapi sjlabelled]; }; + vtable = derive2 { name="vtable"; version="1.4.1"; sha256="1mvcmhy58kibwrjbqm07pynk1rin179nb94j1c6ym8sgq2by1h3g"; depends=[haven kableExtra knitr rstudioapi sjlabelled]; }; vtreat = derive2 { name="vtreat"; version="1.6.3"; sha256="181nsjl811m3k1123bvgnnwr253sc2mbj4ljzmawz9wl7dfbwfij"; depends=[digest wrapr]; }; - vtree = derive2 { name="vtree"; version="5.4.6"; sha256="03n79xn4wr4hqrj571781igd07dw0sxfi6cnvmhmshc0brzkz7s9"; depends=[DiagrammeR DiagrammeRsvg htmlwidgets rsvg shiny]; }; + vtree = derive2 { name="vtree"; version="5.6.5"; sha256="0qszya11qh2xzq1blbrcli3l8hhf0dannhh2hn3gi59c9dn3jr16"; depends=[DiagrammeR DiagrammeRsvg htmlwidgets rsvg shiny utf8]; }; vtype = derive2 { name="vtype"; version="0.8"; sha256="0j070bn86a6hlg99h2qaf0dlbnjjsmx1zdcmvl3acymr31bqyvrj"; depends=[randomForest]; }; vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; }; vueR = derive2 { name="vueR"; version="0.5.3"; sha256="0am4iwgadi9c9f7zm5zx3nrzyhy7w1qgp9rkyypzwb6bicjjb9cz"; depends=[htmltools htmlwidgets]; }; @@ -18430,13 +18545,13 @@ in with self; { waldo = derive2 { name="waldo"; version="0.4.0"; sha256="1aky28rn70l24s0sygl36267cf7hjzhchagsz26abfxwr7p8kvjp"; depends=[cli diffobj fansi glue rematch2 rlang tibble]; }; walker = derive2 { name="walker"; version="1.0.6-1"; sha256="0kmk8lxg3m3436bdghqizjgzln4lqrs3ks1mgfza63n59z5d20h8"; depends=[bayesplot BH coda dplyr ggplot2 Hmisc KFAS loo Rcpp RcppArmadillo RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; walkscoreAPI = derive2 { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; }; - wallace = derive2 { name="wallace"; version="1.1.3"; sha256="0q9nppyiijzbmdi6dvgnh8l8i1vassqcl5wc7bv08hidxbkw3pqs"; depends=[dismo dplyr DT ecospat ENMeval jsonlite leaflet leaflet_extras magrittr raster RColorBrewer rgdal rgeos rmarkdown shiny shinyjs sp spocc spThin zip]; }; + wallace = derive2 { name="wallace"; version="2.0.0"; sha256="11yxiz1gf50jmridh04j0z768mv2cbwganpryrc980rc1anrbm27"; depends=[dplyr DT ecospat ENMeval glue knitcitations leafem leaflet leaflet_extras magrittr RColorBrewer rgdal rgeos rlang rmarkdown shiny shinyalert shinyjs shinyWidgets spocc spThin zip]; }; wally = derive2 { name="wally"; version="1.0.10"; sha256="1d03vxn6q7v0nsrkd7dxkkv3siysgicv6c13fkvwmypln9vsl6sl"; depends=[data_table prodlim riskRegression]; }; walmartAPI = derive2 { name="walmartAPI"; version="0.1.5"; sha256="1nng8izncj2nmmpywn1ggpzvjh8q7y3q6260qhy9kbmvrrl26spf"; depends=[dplyr glue httr magrittr purrr stringr tibble]; }; walrus = derive2 { name="walrus"; version="1.0.5"; sha256="0z674sg78rdv9rmqr7s4w9rw8diciifwr4bc2v57yfvp0n9gcys4"; depends=[ggplot2 jmvcore R6 WRS2]; }; wand = derive2 { name="wand"; version="0.5.0"; sha256="0y9xmh9a93lnadg83i223j2nf77jazz8m1ck1bmdf5jwj4vyzaqa"; depends=[]; }; warabandi = derive2 { name="warabandi"; version="0.1.0"; sha256="0b1g2fpshhkd15b6fz4v3qwf425p5ahbh57acclqq6znl1acl1hg"; depends=[flextable lubridate readtext]; }; - warbleR = derive2 { name="warbleR"; version="1.1.27"; sha256="1fd008v3di7z5ixljk5zwaw2wcc4zfqlnw9546894ybw5m9jsk26"; depends=[bioacoustics crayon dtw fftw knitr monitoR NatureSounds pbapply Rcpp RCurl rjson seewave stringi tuneR]; }; + warbleR = derive2 { name="warbleR"; version="1.1.28"; sha256="061scws8a3jkpnfkpcpwdcxnnqpszshj409qjgcdqrcl0s5d1jh0"; depends=[bioacoustics crayon dtw fftw knitr monitoR NatureSounds pbapply Rcpp RCurl rjson seewave tuneR]; }; warp = derive2 { name="warp"; version="0.2.0"; sha256="0s0acddc5h14245hi1faycxp0fyvw6nlgaz2df7da4fpyd2f638f"; depends=[]; }; warpMix = derive2 { name="warpMix"; version="0.1.0"; sha256="13zbl4aifhg7j5b3vpwgzgs09hr7yblz0rckmj5qh40s78j8cpfn"; depends=[fda fields lme4 MASS nlme reshape2]; }; washdata = derive2 { name="washdata"; version="0.1.3"; sha256="0m7rwwi189sbsv3144x14jqmfax30f6ri1pisy47yggmmjpdplps"; depends=[]; }; @@ -18446,11 +18561,12 @@ in with self; { waterData = derive2 { name="waterData"; version="1.0.8"; sha256="0884agh876wf3qlbc75fbaa47x2iwvncz7r2l25qw34n8lxq1yr6"; depends=[dataRetrieval lattice latticeExtra lubridate xml2]; }; waterYearType = derive2 { name="waterYearType"; version="1.0.1"; sha256="09brbqcd41khycz9lhn84w68wpk8lsdnzb6lzc10gm5s5ambgj06"; depends=[]; }; waterfall = derive2 { name="waterfall"; version="1.0.2"; sha256="0jy6l9mx0dixwnkychdl18sf4xh73pm0qd1jyxp9rlnv1vcragjp"; depends=[lattice]; }; - waterfalls = derive2 { name="waterfalls"; version="0.1.2"; sha256="01gby1mlhrwcalizpywxcakkx2zifswb0188nrl6z9dkkd1866lm"; depends=[ggplot2]; }; + waterfalls = derive2 { name="waterfalls"; version="1.0.0"; sha256="1wj1wlih1fh3y3wj3czhz5fzik7i499l6pycj44rq8rpvi7bkj0d"; depends=[ggplot2]; }; waterquality = derive2 { name="waterquality"; version="0.3.0"; sha256="0aikgz4x2ny2q7mnxsyk5pl87yb9gq6pcvvnj1s32383683j5ys9"; depends=[caret dplyr magrittr pingr purrr raster rgdal vctrs]; }; watson = derive2 { name="watson"; version="0.1"; sha256="06wszdk9d8b07kp5s30q474nd3rz0za6k158g4dl9cpd3bbwzj72"; depends=[Rcpp RcppArmadillo Tinflex]; }; - wavScalogram = derive2 { name="wavScalogram"; version="1.1.1"; sha256="15y5gqp39jx0ggsimmf7k22qg1142c55apd04q05jqi50ljzda70"; depends=[abind colorRamps fields]; }; - waveband = derive2 { name="waveband"; version="4.7.1"; sha256="1ja8jfvv790s6ih50iz6zykpq06dbzqi28cp8vyqcd1iz2bkdixp"; depends=[wavethresh]; }; + wav = derive2 { name="wav"; version="0.1.0"; sha256="1f5y53max7vliq4sq66hqjjns8s9lsx9pkdjk6rm929gk371x7by"; depends=[Rcpp]; }; + wavScalogram = derive2 { name="wavScalogram"; version="1.1.2"; sha256="08yxx0szgxa903majjjv4y7lkkc8kp3j0q0lq9sfjcqcjvk850gn"; depends=[abind colorRamps fields]; }; + waveband = derive2 { name="waveband"; version="4.7.2"; sha256="1aa1rdwpfj3fx3xc7i9h0la268yv7hsm1fxndq3rk5slzy12zq8z"; depends=[wavethresh]; }; waved = derive2 { name="waved"; version="1.2"; sha256="0zv4rgazk9s295pggzfa7sc062zv68dgds1ngxcz7vg1fx0qkgxg"; depends=[]; }; wavefunction = derive2 { name="wavefunction"; version="1.0.0"; sha256="1g0g9i0s93lcpcx7icqn15bvkmd79slkgimspvvwp2bxdsc5nnf2"; depends=[]; }; wavelets = derive2 { name="wavelets"; version="0.3-0.2"; sha256="07706rsjdmzj46ib2kfm5lfk4bnm2wfw7rby0ixs6x0myyzxdl92"; depends=[]; }; @@ -18458,7 +18574,7 @@ in with self; { waver = derive2 { name="waver"; version="0.2.1"; sha256="1kl14cd96fwrqvk35sqbgi8bf31gc2ccxxy5d1v46scwyqkb0g5l"; depends=[geosphere rgdal rgeos sp]; }; waves = derive2 { name="waves"; version="0.2.4"; sha256="128q1l0ishdgpa33zh77xpi79nvziix8swq1rwyawnznl9ybs29w"; depends=[caret dplyr ggplot2 lifecycle magrittr pls prospectr randomForest readr rlang scales spectacles stringr tibble tidyr tidyselect]; }; waveslim = derive2 { name="waveslim"; version="1.8.4"; sha256="1510xpkgrhdw394m5anxccdczjikcxazyd09ix2z73i15akyx3j0"; depends=[]; }; - wavethresh = derive2 { name="wavethresh"; version="4.7.0"; sha256="0b7mm8m6wrfj8x36x2igpwzmvmdjlmdk0j69wly6v5babmb2a1zm"; depends=[MASS]; }; + wavethresh = derive2 { name="wavethresh"; version="4.7.2"; sha256="0mmn8f5x8iw8vn0zsskzs3g41bm28prvzy9bmbng8va94g5795ws"; depends=[MASS]; }; waydown = derive2 { name="waydown"; version="1.1.0"; sha256="1yjx9cd8h8rsi44s7dcqrvfmsbjhw7vkg2z7bl4knsgbki0c978g"; depends=[Matrix numDeriv]; }; waywiser = derive2 { name="waywiser"; version="0.2.0"; sha256="1bx1hmln9z2yaa6r8q30wv3mm0908y0yqqcbyzzgpqpcijvgxxng"; depends=[fields glue hardhat Matrix purrr rlang rsample sf spdep tibble yardstick]; }; wbacon = derive2 { name="wbacon"; version="0.6"; sha256="0b91h71fs07knnqrbr167wdlb1iakafbadzr4zznndwplx3ygpbz"; depends=[hexbin]; }; @@ -18477,11 +18593,12 @@ in with self; { weakARMA = derive2 { name="weakARMA"; version="1.0.3"; sha256="16dzyw7jiyqv9hd94dff9lxhqv9rwib1xs1km0xfqcy6xa2jhw8w"; depends=[CompQuadForm MASS matrixStats vars]; }; wearables = derive2 { name="wearables"; version="0.8.1"; sha256="0fjf43cgna1mg4mgg98kqhhl88yfhrr57rln2z6xm6d6bj73q5zn"; depends=[dplyr futile_logger ggplot2 kernlab lubridate magrittr padr R_utils RHRV signal varian waveslim xts]; }; weathermetrics = derive2 { name="weathermetrics"; version="1.2.2"; sha256="1hjhgsy3v8328hv4czxxz7kp68sxc10sy10f3dv5j8f6pka6qlsp"; depends=[]; }; - webchem = derive2 { name="webchem"; version="1.1.3"; sha256="13dkf4py4nkf7fqnsb7jnjrrcasjj8rndvdkff0g48zfh0ypyaxf"; depends=[base64enc data_tree dplyr httr jsonlite purrr rlang rvest stringr tibble xml2]; }; + webSDM = derive2 { name="webSDM"; version="1.1-1"; sha256="0qxiqba10dbnc6ndv6w50ax6726shn8pc3yqjvbqi1bk7yg03plr"; depends=[abind bayesplot brms broom_mixed dismo dplyr GGally ggplot2 glmnet gridExtra igraph jtools Matrix rstanarm rstantools]; }; + webchem = derive2 { name="webchem"; version="1.2.0"; sha256="0mvd0hppdrqngg1j7x2sdh3nkdb3zmsdf1gwqvzm128v6clsi7ls"; depends=[base64enc data_tree dplyr httr jsonlite purrr rlang rvest stringr tibble xml2]; }; webdeveloper = derive2 { name="webdeveloper"; version="1.0.5"; sha256="1nw97df9q0dpzl82pdybw527hc407ch2xg8f0s2z4kf89yp6ckhg"; depends=[future html5 httpuv promises readr stringi]; }; webdriver = derive2 { name="webdriver"; version="1.0.6"; sha256="0k87any9rvv367p2zwy89r3rxszsq3w78pzdq36by4ijn659la2l"; depends=[base64enc callr curl debugme httr jsonlite R6 showimage withr]; }; webexercises = derive2 { name="webexercises"; version="1.0.0"; sha256="1z0dqiqk0v6h97qg89nwn9d57zn1png066va8dirk3mmk4jlfrqc"; depends=[jsonlite knitr rmarkdown yaml]; }; - webfakes = derive2 { name="webfakes"; version="1.1.5"; sha256="1bg8pkbcazzb0ng3i77mflsb09i5qgmrqr5jhz3iylvxrjrv1pxv"; depends=[]; }; + webfakes = derive2 { name="webfakes"; version="1.1.6"; sha256="0aqa315a8ymfjgg3n7nri7r135r60gwkz118r2jy2bigml31szd4"; depends=[]; }; webglobe = derive2 { name="webglobe"; version="1.0.3"; sha256="0gbg4pai4cn7hdc1943aqpx4bn3vgc82zp93a1wl6bmmajv1da4b"; depends=[geojsonio httpuv jsonlite]; }; webmockr = derive2 { name="webmockr"; version="0.8.2"; sha256="06lqv3v095i51xsac8bvkjgd58l6a5azamchiip8m2y7q0nm4iw9"; depends=[base64enc crul curl fauxpas jsonlite magrittr R6 urltools]; }; webmorphR = derive2 { name="webmorphR"; version="0.1.1"; sha256="1f3sjzck4ys1knn2jmk472yww65wblrdwdlvn1gz2a00nc738rn4"; depends=[dplyr geomorph ggplot2 httr jsonlite magick progress rsvg]; }; @@ -18497,7 +18614,7 @@ in with self; { wec = derive2 { name="wec"; version="0.4-1"; sha256="10lqh43536d44d6082rpp11q1323pmjbmgrgb8v9mrk9c1ysf50w"; depends=[dplyr]; }; weed = derive2 { name="weed"; version="1.1.1"; sha256="18kz10c580a25cxcghvp81irwqncvhjan3y5gnzy8gxm894q3p7m"; depends=[countrycode dplyr forcats geonames ggplot2 here magrittr purrr readxl rgeos sf stringr tibble tidyr tidytext]; }; wehoop = derive2 { name="wehoop"; version="1.5.0"; sha256="0zlmsjw01ca0q9l7myq0sg6qaknc1i91s8jmf5b7v0crnmivd6rd"; depends=[cli data_table dplyr glue janitor jsonlite magrittr progressr purrr Rcpp RcppParallel rlang rvest stringr tidyr usethis]; }; - weibullness = derive2 { name="weibullness"; version="1.19.8"; sha256="19s44mxxcnhngifxshsyjr3a9zvbwywmqgby5dxd73yid1p2k9mr"; depends=[]; }; + weibullness = derive2 { name="weibullness"; version="1.22.12"; sha256="1xksidplbdx7p5phi66dpyca4n701zhxmp6zp78d9z9lh8k67zwx"; depends=[]; }; weibulltools = derive2 { name="weibulltools"; version="2.0.0"; sha256="1flgnsivam9vyrs6hwn3119s5bzczjm5qb1xjwydl1cd6r2984k5"; depends=[dplyr ggplot2 lifecycle magrittr plotly purrr Rcpp RcppArmadillo sandwich segmented SPREDA survival tibble tidyr]; }; weightQuant = derive2 { name="weightQuant"; version="1.0.1"; sha256="0v2wxgvv8v5filiabcd19bmcprfv3l8gg79v6s3c5wmnzir617s5"; depends=[doParallel foreach quantreg stringr]; }; weightedCL = derive2 { name="weightedCL"; version="0.5"; sha256="0gb9p3qvbnqmccsfi3a0hx6i67n5z9fg3jgjrgg6qikgngbq3sld"; depends=[MASS matlab rootSolve sure]; }; @@ -18525,7 +18642,7 @@ in with self; { whereami = derive2 { name="whereami"; version="0.1.9"; sha256="0mjq9haacsf0zkgh7xxx8dr67hnw5ijjdhaz8c69mfjmd2zfzfwq"; depends=[cli jsonlite rstudioapi]; }; whereport = derive2 { name="whereport"; version="0.1"; sha256="1gdqzr2hrnpxbwl7cfps4m3xja8wkgwfs50i2nailybympvdnxm4"; depends=[dplyr]; }; whippr = derive2 { name="whippr"; version="0.1.2"; sha256="16xmbsjzzdf2s19ix655jqpy8v98c39lkllh390zsv9xb12rgryr"; depends=[broom cli dplyr ggplot2 glue lubridate magrittr minpack_lm nlstools patchwork pillar purrr readxl rlang stringr tibble tidyr usethis zoo]; }; - whisker = derive2 { name="whisker"; version="0.4"; sha256="1a7vz0dk95xfjvi38wbpw8vmf5qn3g8p490msz2rw0piwidmk1ks"; depends=[]; }; + whisker = derive2 { name="whisker"; version="0.4.1"; sha256="1g7jy6dnc5igs7yqy1n7cmy0ia8dm2yi3qj1mil2y0q88m4m2ldz"; depends=[]; }; whitebox = derive2 { name="whitebox"; version="2.2.0"; sha256="0l17wik30fbrr2b1hraqs55y76vcc2v826giq92rzgdzh0v7di3n"; depends=[]; }; whitechapelR = derive2 { name="whitechapelR"; version="0.3.0"; sha256="0mnq5m59mw8w5g1p0h2xzlz738j397b3444km59bm5yln3j0nsbi"; depends=[igraph plyr]; }; whitening = derive2 { name="whitening"; version="1.4.0"; sha256="1gc5pf4b9s8w4jh1wygyb9a9w6hi4zfd7ivlwshhzrmb43x5srsp"; depends=[corpcor]; }; @@ -18552,23 +18669,23 @@ in with self; { wildpoker = derive2 { name="wildpoker"; version="1.1"; sha256="1302ain55spz34irmq49sp9b1pvrn2nxmzmqs8m9wdk6g82h3s27"; depends=[]; }; wildviz = derive2 { name="wildviz"; version="0.1.2"; sha256="03vhacaxp5fahq5afcf1q0qvmndpqc6a63pnins7h3p8ryvlpx14"; depends=[DBI dplyr ggplot2 ggthemes httr jsonlite lubridate plotly purrr rnoaa RSQLite shiny shinythemes tibble tidyr]; }; wilson = derive2 { name="wilson"; version="2.4.2"; sha256="050hi6rigs024is1ry0yymqapgqfhzpp0ghk5ya028k71k22lksx"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs shinyWidgets viridis zip]; }; - winch = derive2 { name="winch"; version="0.0.10"; sha256="1hv5b3cqvn4mgxfd62zwn56bwisqj13l5hmjfa1b0rjj82ck8591"; depends=[procmaps]; }; + winch = derive2 { name="winch"; version="0.0.11"; sha256="05yph3z34jsl8lgxd3wnq0in9l9ypl7qbiib1cngr1q0si2xvfp8"; depends=[procmaps]; }; windAC = derive2 { name="windAC"; version="1.2.9"; sha256="00jmgyzi3ars0pwxg5b1dy99pwwwiavzg672x4c46pr65k3iy957"; depends=[mvtnorm sf]; }; windex = derive2 { name="windex"; version="2.0.3"; sha256="063lhxpa8gwkaxa5p61dac239s6b11mv53d8dcah5h1q04inshm0"; depends=[ape geiger phangorn scatterplot3d]; }; windsoraiR = derive2 { name="windsoraiR"; version="0.1.2"; sha256="1smd3zw5ra1fba6mds3diadcmbw59jlvmrvfzzi4fss91wv50jql"; depends=[jsonlite]; }; winfapReader = derive2 { name="winfapReader"; version="0.1-5"; sha256="01hc0kcm7qfzk47rci6lfmrqs4zfj8z7abqydgi2ckq8n1k2pd0h"; depends=[lubridate]; }; wingui = derive2 { name="wingui"; version="0.2"; sha256="0yf6k33qpcjzyb7ckwsxpdw3pcsja2wsf08vaca7qw27yxrbmaa3"; depends=[Rcpp]; }; - wiqid = derive2 { name="wiqid"; version="0.3.1"; sha256="0ccx009r53yz52q3jjh6kify640qgc895y226p1gacnv9sdajssp"; depends=[coda HDInterval MASS mcmcOutput plotrix truncnorm]; }; + wiqid = derive2 { name="wiqid"; version="0.3.3"; sha256="1d5bckkr6cnixccxaa14n7vbsya5cc00y9mryy1j69shhsmxp5ks"; depends=[coda HDInterval MASS mcmcOutput plotrix truncnorm]; }; wiseR = derive2 { name="wiseR"; version="1.0.1"; sha256="187ylwhk06957x9zm5r0m6w9wg08im83myz3s4gr927ig8yv3b5f"; depends=[arules bnlearn DescTools dplyr DT graph HydeNet igraph linkcomm missRanger psych RBGL Rgraphviz rhandsontable rintrojs shiny shinyalert shinyBS shinycssloaders shinydashboard shinyWidgets visNetwork]; }; withr = derive2 { name="withr"; version="2.5.0"; sha256="1h4bzj0am9lawbh1cam1jmgk1xjmn9da14r90w3q984hswz7nc9p"; depends=[]; }; - wk = derive2 { name="wk"; version="0.7.0"; sha256="1pm2293xqcgjckghbf6q9sk7jh74njiynq3wqq1dbwigiz9jfhz2"; depends=[]; }; + wk = derive2 { name="wk"; version="0.7.1"; sha256="116kvg2a9gga14agqvmvj2rbgfpdyasbkjnfjcsw9a9dk0n7g9g5"; depends=[]; }; wkNNMI = derive2 { name="wkNNMI"; version="1.0.0"; sha256="0qpl1b2134kz9mjl38w93lp3g6kpv9ygv9hygpssm845k02hkw7c"; depends=[foreach infotheo]; }; wkb = derive2 { name="wkb"; version="0.4-0"; sha256="0mah538345npkb06bcj18mb6qnnx8nn7bdqmvqqpbawallh546a9"; depends=[sp]; }; wktmo = derive2 { name="wktmo"; version="1.0.5"; sha256="05pjyk0xsdazbi1x7xfmg097ybybd60zmzzm7sch1ikp05hzn0wb"; depends=[]; }; wkutils = derive2 { name="wkutils"; version="0.1.2"; sha256="1b2sbq31z9bfqm6jim56r92ilrxf9hvfd5h9xfw94ypykybvr38n"; depends=[Rcpp tibble vctrs wk]; }; wmm = derive2 { name="wmm"; version="1.1.1"; sha256="0qy4cp4d8nlcqlcs4mqjv1f1kf1yh9y2wvh1ak6f049qlj7yfwfb"; depends=[]; }; wmwpow = derive2 { name="wmwpow"; version="0.1.3"; sha256="03rd75r4wih1w7srhnwqxjkirisb43y1sd2f1wzixqj8lq0dmb25"; depends=[lamW MASS smoothmest]; }; - wnl = derive2 { name="wnl"; version="0.7.0"; sha256="06jw2crz4dfm9xpivapc8ipjjiziqn2ahgn0ssgzagkmv3idc7h1"; depends=[numDeriv]; }; + wnl = derive2 { name="wnl"; version="0.7.1"; sha256="0191z30rq92xy2lzg6mpk4yvj67frfmqzavy7xvmsv96n4pcwbay"; depends=[numDeriv]; }; wnominate = derive2 { name="wnominate"; version="1.3"; sha256="0k4w6qbmwqd720dsslmb3xl53lr0b16rr0w9frybfq4046g9i2c6"; depends=[pscl]; }; wodds = derive2 { name="wodds"; version="0.1.0"; sha256="00rk7wmz0rknh4v9p0r6syi1c5dch7wkq7cz9zg6n8d72sia4azv"; depends=[dplyr glue magrittr purrr tibble]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; @@ -18592,10 +18709,10 @@ in with self; { wordspace = derive2 { name="wordspace"; version="0.2-8"; sha256="17fqd4zrsklv2ik3lg00x66yasfh1kyhs3k9ri6lrk56wwv6hzb2"; depends=[cluster iotools MASS Matrix Rcpp sparsesvd]; }; workboots = derive2 { name="workboots"; version="0.2.0"; sha256="0n55iypiw59n1f09fbynsdznv5mz885rbz4gaqi48ig0hwz896b7"; depends=[assertthat dplyr generics lifecycle Metrics purrr rlang rsample tibble tidyr vip workflows]; }; workflowr = derive2 { name="workflowr"; version="1.7.0"; sha256="0j1ahxm7xjla1xa38dc8ykn1j5a4yw1p8ivjk3k3va25kam25cp3"; depends=[callr fs getPass git2r glue httpuv httr knitr rmarkdown rprojroot rstudioapi stringr whisker xfun yaml]; }; - workflows = derive2 { name="workflows"; version="1.1.0"; sha256="0l5v5qmgj1qv2bk50kv59k2nydh1r97hmqffyxkfpkh2121b2qaq"; depends=[cli generics glue hardhat lifecycle parsnip rlang tidyselect vctrs]; }; + workflows = derive2 { name="workflows"; version="1.1.2"; sha256="1wlgx7gl4h9szw9lr6ck9mnkrflah0wfbs56fialbl7wd5jv6hcg"; depends=[cli generics glue hardhat lifecycle modelenv parsnip rlang tidyselect vctrs]; }; workflowsets = derive2 { name="workflowsets"; version="1.0.0"; sha256="12wj0m6kqnjh8k5k14kqh40wf14gzyg5l3shhbpr2lvk87l9ssqq"; depends=[cli dplyr generics ggplot2 glue hardhat lifecycle parsnip pillar prettyunits purrr rlang rsample tibble tidyr tune vctrs withr workflows]; }; workloopR = derive2 { name="workloopR"; version="1.1.4"; sha256="1gynlvmqxyibql5j3db9dwvc0jsc9jqzpy3d3gp43d5lcl11mcmq"; depends=[pracma signal]; }; - worldfootballR = derive2 { name="worldfootballR"; version="0.6.1"; sha256="0w1r7d2xsz0gavzq9yh7gpvkyrx8y9v1ppxg5pj8cxly0w20ikfq"; depends=[cli curl dplyr glue httr janitor jsonlite lubridate magrittr progress purrr qdapRegex readr rlang rstudioapi rvest stringi stringr tibble tidyr tidyselect withr xml2]; }; + worldfootballR = derive2 { name="worldfootballR"; version="0.6.2"; sha256="1s11qa30x2an8ndjahnx3wxbwf51xdwfqs42qw14wh83m35q2zn2"; depends=[cli curl dplyr glue httr janitor jsonlite lubridate magrittr progress purrr qdapRegex readr rlang rstudioapi rvest stringi stringr tibble tidyr tidyselect withr xml2]; }; worldmet = derive2 { name="worldmet"; version="0.9.6"; sha256="1yb8x9iv8ndnqlpadg1x9sxd48maw9b4ih03rkr508xn98xksyhb"; depends=[doParallel dplyr foreach leaflet openair purrr readr tidyr]; }; worms = derive2 { name="worms"; version="0.2.2"; sha256="183chjdi5qvsmdznvc9igcxaz769a37rwh5nzgvf5zf012a85wir"; depends=[httr plyr]; }; worrms = derive2 { name="worrms"; version="0.4.2"; sha256="1gpbyplfpcrapmci8axarrjjijsgh2dmhnsn79g1lhrafvm2ichs"; depends=[crul data_table jsonlite tibble]; }; @@ -18613,13 +18730,13 @@ in with self; { wql = derive2 { name="wql"; version="1.0.0"; sha256="1s702gvwx49wky2ylh8q5h1vmh6sls2pq69w6jcijh1qs587dngs"; depends=[ggplot2 reshape2 zoo]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; wrGraph = derive2 { name="wrGraph"; version="1.3.1"; sha256="128qhrv2zkl8hl906gf7snqkl4gic41brawcy3a6aq8c4j1dxjvm"; depends=[lattice RColorBrewer wrMisc]; }; - wrMisc = derive2 { name="wrMisc"; version="1.10.1"; sha256="11w98d4h748sc8nfn6xcmsh8nqdxwvq72ygwcid6ijfq8i3rr0zg"; depends=[MASS]; }; - wrProteo = derive2 { name="wrProteo"; version="1.6.0"; sha256="0iq75zdip51aw8y37ckah1mddm69cp0lds2cj0xaavrdbaarww49"; depends=[knitr limma wrMisc]; }; + wrMisc = derive2 { name="wrMisc"; version="1.10.2"; sha256="1mz2a7bmzblky9z1d32zxnbdjiap6v8jhiah38lln2s4vrbx67yd"; depends=[MASS]; }; + wrProteo = derive2 { name="wrProteo"; version="1.7.0.1"; sha256="17lsq5zn74n5a4diaylz7fqc867dl14b2r4rkjxwm36vhx736h19"; depends=[knitr limma wrMisc]; }; wrTopDownFrag = derive2 { name="wrTopDownFrag"; version="1.0.2"; sha256="1rdg6rzjz2h514i3c8z89mvj2j3h1s7rr5fry2mq3xvrwrgd3738"; depends=[wrMisc wrProteo]; }; wrangle = derive2 { name="wrangle"; version="0.5.7"; sha256="0gap15hinsgfjrxajr9kvs0rp76gl5kk2dqs92s9mfyh10kxxqpa"; depends=[dplyr magrittr rlang tidyr]; }; wrappedtools = derive2 { name="wrappedtools"; version="0.8.0"; sha256="1dr70w2y556l664067crrl7ly68d1pb0chyz00cl1sfiyma7nj6x"; depends=[boot coin dplyr forcats ggplot2 glue kableExtra knitr lifecycle magrittr purrr rlang stringr tibble tidyr tidyverse]; }; wrapr = derive2 { name="wrapr"; version="2.0.9"; sha256="1swgf10vg9sh29mn4gsia1rjln47lrqsv765yl19hlpk85qwhsk4"; depends=[]; }; - wrassp = derive2 { name="wrassp"; version="1.0.1"; sha256="02f4r6ax91sxv05mjbz33g04i33gd3548zym5iszzx26mbr6rwkv"; depends=[tibble]; }; + wrassp = derive2 { name="wrassp"; version="1.0.2"; sha256="1zk2rwlm8baf5pyzlcdxbkp40bji3vb64ybiy9pk947gzhpzyz4i"; depends=[tibble]; }; write_snns = derive2 { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; writexl = derive2 { name="writexl"; version="1.4.1"; sha256="1qhf7p14mijdyl5i40gfpzgvdflcs6s8xnwrabsnjxpa17xbamkn"; depends=[]; }; wrswoR = derive2 { name="wrswoR"; version="1.1.1"; sha256="1q0nc08q8f3kl9yvcivzylykk1ar5j5dw3ian2y9nrzgzri5l10i"; depends=[logging Rcpp]; }; @@ -18633,6 +18750,7 @@ in with self; { wtest = derive2 { name="wtest"; version="3.2"; sha256="063ax9mbb2dy33l1cl533mjzpvhf2akw3613pklfjg6bhprlniz7"; depends=[]; }; wux = derive2 { name="wux"; version="2.2-1"; sha256="0iw0kf0wfspnpc83v7gxhcakmp0z34cccnm0jn9c2za9ay9l2swv"; depends=[abind class corpcor fields gdata Hmisc ncdf4 reshape rgdal rgeos rworldmap sp stringr]; }; wv = derive2 { name="wv"; version="0.1.1"; sha256="06xf3c97pjhln1v31waj8rmp4r0y2kp6v2x10pbpvi8m0nf5zfs1"; depends=[coda Rcpp RcppArmadillo simts]; }; + wwntests = derive2 { name="wwntests"; version="1.0.2"; sha256="0lp5xipf1lq8mlpdamsvan82s3fr3g5xbxpdnqjc68abnify0r8s"; depends=[ftsa MASS rainbow sde]; }; wyz_code_metaTesting = derive2 { name="wyz.code.metaTesting"; version="1.1.21"; sha256="1033kz6zhbhd09dh40gp03dfy2kf9zskqh942i06jx1z2dvx3vvi"; depends=[crayon data_table tidyr wyz_code_offensiveProgramming]; }; wyz_code_offensiveProgramming = derive2 { name="wyz.code.offensiveProgramming"; version="1.1.23"; sha256="1cxzh5yp6y2r5n6qkhb4g4dkbyw7mdnsfh883bhksk527ra4qaln"; depends=[crayon data_table R6 stringr tidyr]; }; wyz_code_rdoc = derive2 { name="wyz.code.rdoc"; version="1.1.19"; sha256="02k6wk45dn6i8kzxhgcxqxvrzxf063dny17jjnj83wsxx2b37jgv"; depends=[crayon data_table digest R6 stringr tidyr wyz_code_offensiveProgramming]; }; @@ -18648,15 +18766,15 @@ in with self; { xSub = derive2 { name="xSub"; version="3.0.2"; sha256="07mib63zbvffr4w8klpv017d13wvqy3mwrpssr0vydcj8475gjfx"; depends=[countrycode haven RCurl]; }; xVA = derive2 { name="xVA"; version="1.1"; sha256="06y9qhly14y5r8d1g85jdzz8x5lwzfjkiy5zak6146mknl4nzz11"; depends=[data_table SACCR Trading]; }; xadmix = derive2 { name="xadmix"; version="1.0.0"; sha256="0vrk40q9nn40aisvgj3pq9q6z5kb68j614wpg7bx98fx3gqnxzxv"; depends=[dplyr forcats ggplot2 magrittr rlang stringr tidyr viridis]; }; - xaringan = derive2 { name="xaringan"; version="0.26"; sha256="1p9y6pjdpk4s5xz3zvmdzx9x8wla668cr075yaxc482kl7snskr6"; depends=[htmltools knitr rmarkdown servr xfun]; }; + xaringan = derive2 { name="xaringan"; version="0.27"; sha256="1f1xam86sgrdh0h1kgpl6yvfrhw1r22wkjl18jwx2qnrfd3bxwcx"; depends=[htmltools knitr rmarkdown servr xfun]; }; xaringanExtra = derive2 { name="xaringanExtra"; version="0.7.0"; sha256="1snj4yf5mxn419d3qbm2pixj7gvhmf133sxvjbirjrr3ib6iyn84"; depends=[htmltools jsonlite knitr uuid]; }; xaringanthemer = derive2 { name="xaringanthemer"; version="0.4.2"; sha256="074lq9m61647ac7crjmpf8qjj4l60ps0ic4c4b83g47drar79v2z"; depends=[colorspace glue purrr whisker]; }; xbreed = derive2 { name="xbreed"; version="1.0.1.1"; sha256="032i04ginyf9dyabfkygnhrkq7lqdvvyw7s41vjimy2kvjrnkkkx"; depends=[BGLR]; }; xdcclarge = derive2 { name="xdcclarge"; version="0.1.0"; sha256="1j8wsidwmfjygqlwavxinv4bqc6rddy42jdmlknsjfrrs49yj8kn"; depends=[nlshrink Rcpp RcppArmadillo]; }; - xefun = derive2 { name="xefun"; version="0.1.1"; sha256="1zqsh9i1ss39i9sm89b209affr68a2fx5wmjqnq37bgxp4wxs5zx"; depends=[data_table]; }; + xefun = derive2 { name="xefun"; version="0.1.2"; sha256="1i5l82q5xlgdq682103k84x1w8ly7a1ak5gbvbvx9ikwr42jz7ll"; depends=[data_table]; }; xergm_common = derive2 { name="xergm.common"; version="1.7.8"; sha256="03mjpafwfkmyj5ba84jydap9rp0i602izjlbd511xbxcw6dx2k0b"; depends=[ergm network]; }; xesreadR = derive2 { name="xesreadR"; version="0.2.3"; sha256="1pvdx0mxg2f885bhy4hb3kqzcgva4q7hzzaipkfzyi5lnjdsbc81"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; - xfun = derive2 { name="xfun"; version="0.34"; sha256="0gc5lbk73bf0yhvc7wwz7hbq39hvphd8xdsgwi2c125rxcgnrrsh"; depends=[]; }; + xfun = derive2 { name="xfun"; version="0.35"; sha256="04x6y7f3f105fzxn2kzmvfz0zqf2v28g8aqnsln6q9n4lm74vz45"; depends=[]; }; xgb2sql = derive2 { name="xgb2sql"; version="0.1.2"; sha256="1gw5dw0ck5hip8mv347zaswrggk395bg2hgn02bvqs0d31jhmgvi"; depends=[data_table xgboost]; }; xgboost = derive2 { name="xgboost"; version="1.6.0.1"; sha256="1gafjv6vcpny03lqw8s68xszalsylniavaqwsbzh46vyk4h9mscs"; depends=[data_table jsonlite Matrix]; }; xgxr = derive2 { name="xgxr"; version="1.1.1"; sha256="00fd9n2qivfxg2b7vynssc82afa7nskg4akk6cgxnyhcai5jbmra"; depends=[assertthat binom Deriv DescTools dplyr ggplot2 glue gtable Hmisc labeling magrittr minpack_lm pander png RCurl readr scales stringr tibble]; }; @@ -18678,11 +18796,11 @@ in with self; { xnet = derive2 { name="xnet"; version="0.1.11"; sha256="18lda1gv53awsbkk5p4bzrbilndgybdz8xc6lhl6wy647fw9q9hv"; depends=[]; }; xoi = derive2 { name="xoi"; version="0.70"; sha256="1raa5kr3h62j1lvjb0mn973pknyw8caixfh78rhgrhzxiilllil8"; depends=[qtl]; }; xopen = derive2 { name="xopen"; version="1.0.0"; sha256="1vrvgdika1d63dwygynbv2wmd87ll8dji5dy89hj576n8hw601z2"; depends=[processx]; }; - xpectr = derive2 { name="xpectr"; version="0.4.2"; sha256="0pbpv3k1h7xglyry1pxjqvkbp6vhk2yl4nlvd5xwz29vlnda7gd8"; depends=[checkmate clipr dplyr fansi lifecycle plyr rlang rstudioapi testthat tibble withr]; }; + xpectr = derive2 { name="xpectr"; version="0.4.3"; sha256="0qpv2r4dz5g37v2b6y5jscsxm1hdmimq8pm0dwwf8df0pp351r3b"; depends=[checkmate clipr dplyr fansi lifecycle plyr rlang rstudioapi testthat tibble withr]; }; xplain = derive2 { name="xplain"; version="0.2.2"; sha256="152a83ckmhns6yniy87mmjva5bkv5x3phv63l1kkcmrr9bclfgz0"; depends=[httr RCurl readr XML]; }; xplorerr = derive2 { name="xplorerr"; version="0.1.2"; sha256="0sca6nngjs6f51di4dgzx868p75bzas0msr0kgivavsv6rj5fz0r"; depends=[Rcpp shiny]; }; xportr = derive2 { name="xportr"; version="0.1.0"; sha256="0dcjlc27v6a45gj8qfh6i31d7386kbs9w05mj74zx1apwn1x6j5m"; depends=[cli dplyr glue haven janitor magrittr purrr readr rlang stringr tidyselect tm]; }; - xpose = derive2 { name="xpose"; version="0.4.13"; sha256="0sbr5br8jzszn6j7jccrdfn95svdlqxn8xqjp29zdxnp3zjlkkd5"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; }; + xpose = derive2 { name="xpose"; version="0.4.14"; sha256="0ppnhnyi3xh7bcss6i1fpwz1rli3m5v20w3ia7azga09xfqycnyk"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; }; xpose_nlmixr2 = derive2 { name="xpose.nlmixr2"; version="0.4.0"; sha256="0scq6brd7sn1ybmacxlpdlmkwxbn9sc2gpzw6438fwfjss6sza8s"; depends=[crayon dplyr ggplot2 magrittr nlmixr2est rlang stringr tibble tidyr vpc xpose]; }; xpose4 = derive2 { name="xpose4"; version="4.7.2"; sha256="149ridxvbbkyxlnyhvw31gh2574cdycrrn89qwzvi4b5wb0p7psi"; depends=[dplyr gam Hmisc lattice lazyeval readr survival tibble]; }; xptr = derive2 { name="xptr"; version="1.1.3"; sha256="0352vs8dz61hgpwnf3r9r9haz3adg2wk9qxzrv313p1fcyfjz91v"; depends=[]; }; @@ -18695,49 +18813,47 @@ in with self; { xtal = derive2 { name="xtal"; version="1.15"; sha256="1zq3vd5x3vw6acn47yd2x7kflr9sm3znmdkm68cs64ha54jbl3vs"; depends=[]; }; xtensor = derive2 { name="xtensor"; version="0.13.2-0"; sha256="0jwmcrhdnj02f4qbwyf4z4rpgyrw7wc3m9fwqp8l5f57g5ywkjgf"; depends=[Rcpp]; }; xtermStyle = derive2 { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; }; - xtreg2way = derive2 { name="xtreg2way"; version="1.0.0"; sha256="0wllz0frakmadavgpqhd2b8fiw6wgwh5wzd270czc6cm5bq9gfng"; depends=[MASS Matrix pracma]; }; xts = derive2 { name="xts"; version="0.12.2"; sha256="0hx7vh8cm4c80rnhwqg78l5xb0snvf4adrkbb74z93vmxgm7qa4w"; depends=[zoo]; }; xutils = derive2 { name="xutils"; version="0.0.2"; sha256="1h07gs8pj7hn64r35ld1j1zakc243aiiwdrz92viqrg7z75czdzl"; depends=[Rcpp]; }; xwf = derive2 { name="xwf"; version="0.2-3"; sha256="1byj6vjk2abm9j919107xsa3nd40zbsvxaldvv4ml3c47k1fg3kc"; depends=[mgcv]; }; xxIRT = derive2 { name="xxIRT"; version="2.1.2"; sha256="0b8yv8ixmcjiv9hlvpfdknx815smy7df7f2ixifnvhxxafgf1fwq"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2]; }; yaConsensus = derive2 { name="yaConsensus"; version="1.0"; sha256="1srph1yc8lr00yvx6sjm0br9h2cq94xqb9yjxfb0bqvvmskp6s2s"; depends=[doParallel foreach pheatmap]; }; - yaImpute = derive2 { name="yaImpute"; version="1.0-32"; sha256="1zvkrmlj48ahg9jq0fkbn7j603fmmld57yc0gjfas2mqa7cfbvh8"; depends=[]; }; + yaImpute = derive2 { name="yaImpute"; version="1.0-33"; sha256="0b2i0aymwb150068ji27i574p8lf8566cy6amppgzj8vxdi54naq"; depends=[]; }; yacca = derive2 { name="yacca"; version="1.4-2"; sha256="197iv7qcbp9xx8kmpwb98acpkgzn9m7sncn6qi7k0chjx78095ws"; depends=[]; }; yager = derive2 { name="yager"; version="0.1.1"; sha256="178ypdr3f0w9rb4ci8q2hshr62b7993m8q6zxc4pf0msq175n1ml"; depends=[lhs MLmetrics randtoolbox]; }; yahoofinancer = derive2 { name="yahoofinancer"; version="0.1.0"; sha256="1zr5hpafqzx6h9qfx7b1ji19kzkh19gz1h1x37rx1256anrc07zq"; depends=[httr jsonlite lubridate magrittr purrr R6 stringr]; }; yaml = derive2 { name="yaml"; version="2.3.6"; sha256="09msw6k0hsazjna53ya3c6p8alfajs7cw5k2rm62xvslcs6rvlax"; depends=[]; }; - yamlet = derive2 { name="yamlet"; version="0.9.8"; sha256="0sc6mkqdfzmv9y75b0kqxly3b6amhj899l0dqprlz1ncrx3d2bb3"; depends=[csv dplyr encode ggplot2 pillar rlang scales spork tidyr units vctrs xtable yaml]; }; - yamlme = derive2 { name="yamlme"; version="0.1.1"; sha256="1cknx8ndcb9rz1j7z27244vba8hxyh5sa9zwsv6rwk9g1c52vmyg"; depends=[]; }; + yamlet = derive2 { name="yamlet"; version="0.10.0"; sha256="1snsvfshj7xw4lpzk4jgfpzzcqgxmy80jppqig5k27kk3v7a53lf"; depends=[csv dplyr encode ggplot2 pillar rlang scales spork tidyr units vctrs xtable yaml]; }; + yamlme = derive2 { name="yamlme"; version="0.1.2"; sha256="1019nzchqif4r3c7ywq23bjx711g359q44s8jy0rxyv03rij6xh9"; depends=[rmarkdown yaml]; }; yap = derive2 { name="yap"; version="0.1.1"; sha256="0m126vpfvlmwkpy14i9wbzr51hb8r6s3wcdm3vp9izfccpnxfxl2"; depends=[lhs randtoolbox]; }; yaps = derive2 { name="yaps"; version="1.2.5"; sha256="0309vc67v5kfbdcah5gnvdqwdxir4k1ik47dw6msw2hvg6lpqvqf"; depends=[circular cowplot data_table ggplot2 ggrepel nloptr plyr Rcpp RcppEigen reshape2 splusTimeSeries tictoc TMB viridis zoo]; }; yardstick = derive2 { name="yardstick"; version="1.1.0"; sha256="0bcirq9mp7c6kwx563nnsd4lk33xk0rfaakj1xj5r8pzmrcgbikj"; depends=[dplyr generics hardhat rlang tidyselect vctrs]; }; yarr = derive2 { name="yarr"; version="0.1.2"; sha256="16q109jrydckz7s1rkmr2sh8q92cgr1c534fvpbh3h0bc3fvvf8g"; depends=[]; }; yarrr = derive2 { name="yarrr"; version="0.1.5"; sha256="1258bj7x4icaxfabnnd3fgwydnqbzxkih7zw0sdlwdax3q8fw5c5"; depends=[BayesFactor circlize jpeg]; }; yasp = derive2 { name="yasp"; version="0.2.0"; sha256="0fza8h9y1wmarsmjcvw4r970d6j4ii795pd2h4xh9nlsirv50adi"; depends=[]; }; - yatah = derive2 { name="yatah"; version="0.1.0"; sha256="0ayy0h399g3csn106vvq6j4h6w0sgzw33b7gj1hk05nc8hdzrmna"; depends=[ape purrr stringr]; }; + yatah = derive2 { name="yatah"; version="0.2.1"; sha256="0cckmslzm19kg7vkv28aq8h4yx8m2khqs9d6y98gwl64qrjiz42g"; depends=[ape purrr stringr]; }; ycevo = derive2 { name="ycevo"; version="0.1.2"; sha256="1s61rdsll7b9dyc1lamyp4mlsw7vyf9lshw2dg3x5i3xf5rmrrsd"; depends=[dplyr magrittr Matrix Rcpp RcppArmadillo rlang]; }; yesno = derive2 { name="yesno"; version="0.1.2"; sha256="1n9v8m1wkk9p2ahl7d1khbffxmshv68q1v44v04y4v1k6qjvm0i2"; depends=[]; }; - yfR = derive2 { name="yfR"; version="1.0.2"; sha256="11xm37i2fdvsk56q42kg1rdy82czfxl83p17c96bh63vhpj9iqp9"; depends=[cli curl dplyr furrr future humanize lubridate magrittr purrr quantmod readr rvest stringr tibble tidyr zoo]; }; + yfR = derive2 { name="yfR"; version="1.0.4"; sha256="1zqsa6d69klwz95q47fkr5vh6vzcx48ypfyhwbwz7r2krbma8lbh"; depends=[cli dplyr furrr future humanize lubridate magrittr pingr purrr quantmod readr rvest stringr tibble tidyr zoo]; }; yhat = derive2 { name="yhat"; version="2.0-3"; sha256="00cbzj2bvr2pfspycqyf7jrdqyfg63zx25b6r9k3khafvn0ch7h1"; depends=[boot miscTools plotrix yacca]; }; yhatr = derive2 { name="yhatr"; version="0.15.1"; sha256="18g2cr1kjxnfw6cwzl62ynppfv1zz732kbx18zq8918l85kx6wbw"; depends=[httr jsonlite stringr]; }; yll = derive2 { name="yll"; version="1.0.0"; sha256="0lf3cd6pfzki29nk2iy0vd6v4dw6zlsbrjh2839zq5vlpiimsvck"; depends=[]; }; ymd = derive2 { name="ymd"; version="0.0.1"; sha256="02cd7y28s406yzvax2d47xwrsqyd8mhhb879ywjqfj6lvwf3jvkd"; depends=[]; }; ymlthis = derive2 { name="ymlthis"; version="0.1.7"; sha256="127rh8mfff0ii6wcd7iaaz60vlkynjlrs188wwcap8l2qgv67idy"; depends=[crayon fs glue magrittr purrr rlang rmarkdown rstudioapi stringr usethis whoami withr yaml]; }; - ympes = derive2 { name="ympes"; version="0.2.0"; sha256="0mqk2w7dwjzaas2ajqd3qg22dz66w2s6wl9xzy140qmnv76vzpvh"; depends=[]; }; + ympes = derive2 { name="ympes"; version="0.2.1"; sha256="018wvzaxcr0npgjvdwmgjm8cdkd449lpcmppdwy461zdxs8p1wrl"; depends=[]; }; yorkr = derive2 { name="yorkr"; version="0.0.34"; sha256="06y410klfnq2n0lgilgdgmh2cjsz1vphy3wvmjgcpbld89yv0q7g"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; youngSwimmers = derive2 { name="youngSwimmers"; version="0.0.1"; sha256="02ih66ad8v5qkgyszllkh9319sfd6fqcci4zrvbjr1dfwlwa2ri1"; depends=[data_table lifecycle]; }; youtubecaption = derive2 { name="youtubecaption"; version="1.0.0"; sha256="15cafl7b03xrql2y2ayy6ajf6v764wym3xqs4pbzlf6ncy8qwl5r"; depends=[dplyr magrittr purrr reticulate stringr tibble writexl]; }; ypr = derive2 { name="ypr"; version="0.6.0"; sha256="0hn4zbg270p8yg4wxcszwfc0vsf2mb21lkqi1745000rh5cbz8sa"; depends=[chk ggplot2 lifecycle purrr tibble tidyplus yesno]; }; ypssc = derive2 { name="ypssc"; version="1.1.0"; sha256="0fpph19amj1cafcbh5k6s75pi7nahzgfvnsbs9i5644gv43iavbj"; depends=[dplyr eulerr Peptides readxl spelling stringr svDialogs]; }; - yuima = derive2 { name="yuima"; version="1.15.15"; sha256="19cymdqd7bpnlhy61ch1bp4pd43kzrhrql1l7vsddkiq26xx1isr"; depends=[boot calculus coda cubature expm glassoFast mvtnorm Rcpp RcppArmadillo zoo]; }; + yuima = derive2 { name="yuima"; version="1.15.18"; sha256="0jvx8rfpq6xkzfqj2nb90sq8mn90vfj839f7n23n5r11sp4l7jaz"; depends=[boot calculus coda cubature expm glassoFast mvtnorm Rcpp RcppArmadillo zoo]; }; yuimaGUI = derive2 { name="yuimaGUI"; version="1.3.1"; sha256="1sl45kmqqq7hg3lkpn3cy70f409fwsgg76gjldx1l4cvmyzyf9hl"; depends=[DT ggplot2 ghyp plotly quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; yulab_utils = derive2 { name="yulab.utils"; version="0.0.5"; sha256="0sq5wc0mp84h6fs4wa2smvf7dcn0p0xarzb2ljvqc3p4vb2lvkbf"; depends=[]; }; yum = derive2 { name="yum"; version="0.1.0"; sha256="1k9q34n1pzv4c7hp7cd4yhm8v1qv41an8vfh65n4byvyzipxp85y"; depends=[yaml]; }; zCompositions = derive2 { name="zCompositions"; version="1.4.0-1"; sha256="1rrhja9iaq123r2gqw1bzrn1ri0s3z4wzq8p0sfcr1yb6pv13vik"; depends=[MASS NADA truncnorm]; }; zTree = derive2 { name="zTree"; version="1.0.7"; sha256="005zk6wpchpss6865ki35yawgf668pn70163ah97rnfkhfaswm6y"; depends=[plyr]; }; zalpha = derive2 { name="zalpha"; version="0.3.0"; sha256="04hi5lxgcqzmkbqppp5fv8x7wdgap3bgr8b8pv4pvavzh73jlmxs"; depends=[]; }; - zbank = derive2 { name="zbank"; version="0.1.0"; sha256="0vzvlri3sncvbz2cdg8wzlpskm1lq9ji0jrfy5cx4ib19m6gxhpc"; depends=[crul jsonlite tibble]; }; - zcurve = derive2 { name="zcurve"; version="2.1.2"; sha256="0j5adicqvdbvqq70163ibv09qaxzhdrphh4xgjvipvw9akmmcy0j"; depends=[evmix nleqslv Rcpp Rdpack]; }; + zcurve = derive2 { name="zcurve"; version="2.2.0"; sha256="0hxjizans42y936pfmcwgkjc6kk9c61xz8b8lglpzzqz48fyvcaw"; depends=[evmix nleqslv Rcpp Rdpack]; }; zdeskR = derive2 { name="zdeskR"; version="0.2.0"; sha256="0kbdkxly20ai3nfwwqj04gncbg1g3sh9gy323hsif919wpid8qzg"; depends=[dplyr httr jsonlite magrittr plyr purrr tidyr]; }; zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; zebu = derive2 { name="zebu"; version="0.2.0.0"; sha256="0nd44j2zxsagg9sav3lm8gzbyq8cdk1kfgbn503hb3a58kcqyg0d"; depends=[data_table ggplot2 Rcpp reshape2]; }; @@ -18753,11 +18869,10 @@ in with self; { zic = derive2 { name="zic"; version="0.9.1"; sha256="1vd64ljigf6iwgzlgdxgj65nlwir176h7ddznddpaz2abh6n6zwp"; depends=[coda Rcpp RcppArmadillo]; }; zip = derive2 { name="zip"; version="2.2.2"; sha256="194f19649jqw8wa2bd1kj3873hqnqxsrbqdwnvlzngi8pcixwv71"; depends=[]; }; zipR = derive2 { name="zipR"; version="0.1.1"; sha256="1aaw3dslhsw3zgxvkc1v60vsk44x64i4qmjwx0gq4f7dad1rbiqp"; depends=[]; }; - zipangu = derive2 { name="zipangu"; version="0.3.1"; sha256="0cl9zzl203nc7yf2v7a1mz19aqs3wlxc3d8l3ajszxy5pxvgfxdm"; depends=[arabic2kansuji dplyr lifecycle lubridate magrittr memoise purrr rlang stringi stringr tibble]; }; + zipangu = derive2 { name="zipangu"; version="0.3.2"; sha256="0l5jhv0xl0rh7z546zn2p3gaci1v7d9d3ha6040kixclkmhb5dp6"; depends=[arabic2kansuji dplyr lifecycle lubridate magrittr memoise purrr rlang stringi stringr tibble]; }; zipcodeR = derive2 { name="zipcodeR"; version="0.3.5"; sha256="1fmjqfhxd0lgsn6l5jvi3qzhbq9865xcps3jm9iy72jx7jxr59lk"; depends=[curl DBI dplyr httr jsonlite raster rlang RSQLite stringr tidycensus tidyr]; }; zipfR = derive2 { name="zipfR"; version="0.6-70"; sha256="15ng7rj7qbgxajx8jb9kv04xmbidg9wwzxr2xaskmlaxrxlqac8c"; depends=[]; }; zipfextR = derive2 { name="zipfextR"; version="1.0.2"; sha256="03rlvvw7rfbhsbwd5njmgkkkrxq1lgjdydmpkn6h1hi97pc0gbhh"; depends=[copula tolerance VGAM]; }; - ziphsmm = derive2 { name="ziphsmm"; version="2.0.6"; sha256="0lm6m2g9jd1v7gxv4viych8c59phbvz1yly1ydgajl8q251d8n87"; depends=[pracma Rcpp RcppArmadillo]; }; zipsae = derive2 { name="zipsae"; version="1.0.2"; sha256="03kwfpjpwxqlphdy7xyhsf7d0mcg67jhvm7yz4i73ckmjdmq7wrd"; depends=[]; }; zlog = derive2 { name="zlog"; version="1.0.0"; sha256="1d5j31p0h3rrn230087h3ngpvwknlisjv0f1qdbicdj9m177spci"; depends=[]; }; zmisc = derive2 { name="zmisc"; version="0.2.2"; sha256="154qm0f2ds40gwxqv30nf2px26clkf2lw2y51ak12gxpj08b6mix"; depends=[]; }; @@ -18787,6 +18902,7 @@ in with self; { AMGET = derive2 { name="AMGET"; version="1.0"; sha256="18wdzzg5wr7akbd1iasa4mvmy44fb2n5gpghwcrx80knnicy3dxq"; depends=[]; broken = true; }; AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; broken = true; }; AMORE = derive2 { name="AMORE"; version="0.2-16"; sha256="0vw6hhykg1r6xxja6d4zb2y00x7pfkmhcq9xkidz8p4arinb7xnl"; depends=[]; broken = true; }; + APAtree = derive2 { name="APAtree"; version="1.0.1"; sha256="0vhvx2xp62avyq405jqn4i3z8awlifcs1lb527brxxhybrhnk4rv"; depends=[BH FD lwgeom raster Rcpp sf units]; broken = true; }; APML = derive2 { name="APML"; version="0.0.5"; sha256="1md9vryq2qf4cx3jrgh7p2j87qc8iil1cszw0vay5ylzaw4bz1hl"; depends=[dplyr fastDummies ggplot2 h2o performanceEstimation pROC survival]; broken = true; }; APSIMBatch = derive2 { name="APSIMBatch"; version="0.1.0.2374"; sha256="0j44ijq1v1k60lka9nmw8m1jfjw7pidny9bvswqy5v82gzmwl29d"; depends=[]; broken = true; }; ASPBay = derive2 { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp RcppArmadillo]; broken = true; }; @@ -18796,6 +18912,7 @@ in with self; { AUCRF = derive2 { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; broken = true; }; AWAPer = derive2 { name="AWAPer"; version="0.1.46"; sha256="02n662wvd8qwshfmj9qfff730qs6ls82hkdsphw05jj6llddi4k5"; depends=[chron Evapotranspiration maptools ncdf4 raster sp xts zoo]; broken = true; }; AdapEnetClass = derive2 { name="AdapEnetClass"; version="1.2"; sha256="01k3mj4g1ckbng7wkzzn9h0k9yf01cpnnkly0sjda574c5jhj0rc"; depends=[glmnet imputeYn lars quadprog]; broken = true; }; + AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.69"; sha256="0mclsnsxjyg1q7p7654gjsczzdzpa6avx3b9jpmdb0n63zdgmwy3"; depends=[MASS mgcv nlme SemiPar]; broken = true; }; AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; broken = true; }; AirSensor = derive2 { name="AirSensor"; version="1.0.8"; sha256="0wpfg3mry1vdyd9v1981hasizj1mn5wy60ig9swxlqdm7j11wxan"; depends=[countrycode cowplot dplyr dygraphs geodist geosphere GGally ggmap ggplot2 gridExtra httpcode httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaLocationUtils MazamaSpatialUtils openair PWFSLSmoke RColorBrewer readr rlang scales seismicRoll sp stringr tibble tidyr tidyselect worldmet xts zoo]; broken = true; }; AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; broken = true; }; @@ -18818,21 +18935,21 @@ in with self; { BCellMA = derive2 { name="BCellMA"; version="0.3.4"; sha256="1njprs7ksv0w18ffs0agz0290aa2akw48225iaa3bjhbl08dpidl"; depends=[ggplot2 reshape2]; broken = true; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; broken = true; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; broken = true; }; - BIS = derive2 { name="BIS"; version="0.2.1"; sha256="0mngmchgc46wc9a7ksyqrvj6k46nm4ih7x69k3xijfia9bgkym0v"; depends=[dplyr readr rvest tidyr xml2]; broken = true; }; BKPC = derive2 { name="BKPC"; version="1.0.1"; sha256="17gmhf6qq8jn2xzkqvjq60xzy0slz6kgfpd0d6hlpnf30ww7q923"; depends=[kernlab]; broken = true; }; BNDataGenerator = derive2 { name="BNDataGenerator"; version="1.0"; sha256="17zi83jhpn9ygavkpr9haffvd4622sca18jzzxxxmfq0ilrj201g"; depends=[]; broken = true; }; BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; broken = true; }; + BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="1.3"; sha256="1dnylvag24zqp93acdbn0ilbdzbn250pjjp6hjdd9d1zvla2ck85"; depends=[gplots MASS matrixcalc mvtnorm plyr Rcpp RcppArmadillo truncnorm]; broken = true; }; BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; broken = true; }; + BPEC = derive2 { name="BPEC"; version="1.3.1"; sha256="0jvq56cq1wnhwd6wvg02hbx4b5vc2hz1lyxi63pl41rk0xva615a"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools sp]; broken = true; }; BPmodel = derive2 { name="BPmodel"; version="1.1.2"; sha256="1fmiz06ci3x4ljaap6famnz82mrf2rcdg4d282x6wghpy4yv4afa"; depends=[Deriv dplyr extraDistr gamlss gamlss_dist ggplot2 pracma]; broken = true; }; BSGS = derive2 { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; broken = true; }; - BSGW = derive2 { name="BSGW"; version="0.9.2"; sha256="1q6qvm9yxh35wywrzs3kr31jsa0bmbwrqh0r3qjc0dzi6q8n6pjy"; depends=[doParallel foreach MfUSampler survival]; broken = true; }; BaBooN = derive2 { name="BaBooN"; version="0.2-0"; sha256="145q2kabjks2ql3m48sfjis5y35l8rcqnr5s176viv9yhfafn351"; depends=[coda Hmisc MASS nnet Rcpp RcppArmadillo]; broken = true; }; + BaPreStoPro = derive2 { name="BaPreStoPro"; version="0.1"; sha256="0zyyyrr5h8dhjsmgaii8jmb8ignvixpc9nzbfishw9yymjswvm57"; depends=[]; broken = true; }; + BacArena = derive2 { name="BacArena"; version="1.8.2"; sha256="1fv3hmr8frqgdl22cvp5w5089ppmqzw42llw2ls054dvsdadlqm9"; depends=[deSolve ggplot2 glpkAPI igraph Matrix plyr R_matlab Rcpp RcppArmadillo RcppEigen ReacTran reshape2 stringr sybil]; broken = true; }; BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; broken = true; }; BaySIC = derive2 { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; broken = true; }; - BayesBEKK = derive2 { name="BayesBEKK"; version="0.1.0"; sha256="0fykcmf54820krwy7q573gmlcrx96i94knx7rgzc83i287lnpnfg"; depends=[coda MTS mvtnorm]; broken = true; }; BayesGESM = derive2 { name="BayesGESM"; version="1.4"; sha256="0qw2byb48f67461m1k8a1rqh6a0c3zq1rc4ni9xzxv8dih4wkq0f"; depends=[Formula GIGrvg normalp]; broken = true; }; BayesNI = derive2 { name="BayesNI"; version="0.1"; sha256="0zvr6rkb5zxgl53xby69d0j3yrfnlcmac6kwkxz77q5616w9dwq0"; depends=[]; broken = true; }; - BayesOrdDesign = derive2 { name="BayesOrdDesign"; version="0.1.1"; sha256="11l6aabnagdfsqgkx3h6h6jywp959h7882v2n81hz3mqdx825y0d"; depends=[coda DescTools fda ggplot2 gsDesign madness ordinal R2jags rjags rjmcmc schoolmath superdiag tidyverse]; broken = true; }; BayesSummaryStatLM = derive2 { name="BayesSummaryStatLM"; version="2.0"; sha256="1b4h6s3cb8904slyy2pq3dzy3941p87s32zacmpwrnp7yvwxzl3d"; depends=[bit ff mvnfast]; broken = true; }; BayesValidate = derive2 { name="BayesValidate"; version="0.0"; sha256="1gli65avpkb90asx92l1yjbwaxcsyb920idyjwgd2sl2b3l657ly"; depends=[]; broken = true; }; BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; broken = true; }; @@ -18842,7 +18959,10 @@ in with self; { BigDataStatMeth = derive2 { name="BigDataStatMeth"; version="0.99.32"; sha256="0iz6pzlhkziwdwv80sy9zcxfvkxxjhqmgn7lk7lv1mkhywqkd9jk"; depends=[beachmat BH data_table Rcpp RcppEigen RcppParallel RCurl rhdf5 Rhdf5lib RSpectra]; broken = true; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; broken = true; }; BinQuasi = derive2 { name="BinQuasi"; version="0.1-6"; sha256="0jf7zf3yqr2kgcm6h35234x2dqf65d2dzsh63b4q8m5l36r77k59"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog RMySQL Rsamtools S4Vectors SummarizedExperiment]; broken = true; }; + BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; broken = true; }; BioMedR = derive2 { name="BioMedR"; version="1.2.1"; sha256="0l3nmnqv0gzkbby4fhajbba910zpnbyckvxwds353pn54g9pcry7"; depends=[Biostrings ChemmineR fmcsR GOSemSim MASS org_Hs_eg_db pls randomForest rcdk RCurl rjson]; broken = true; }; + Biolinv = derive2 { name="Biolinv"; version="0.1-3"; sha256="1c081rhbgl6n76p2knaiyvjx0l02slix92vgfl2spss5cb9qzkln"; depends=[classInt fields raster sp spatstat spatstat_core spatstat_geom]; broken = true; }; + Biopeak = derive2 { name="Biopeak"; version="1.0"; sha256="1l08m1jl8yygbdfzk8klpj1q2m7icvxi98vmk7akxs0sswjc6wd2"; depends=[cluster dbscan factoextra gplots RColorBrewer]; broken = true; }; BivarP = derive2 { name="BivarP"; version="1.0"; sha256="08f7sphylaj3kximy1avaf29hxj2n800adsnssh01p9bcxnzb2i4"; depends=[copula dfoptim survival]; broken = true; }; BlockFeST = derive2 { name="BlockFeST"; version="2.0"; sha256="1fcl3yc1cf09znqbj787d3fd2kl5rp63la7pxawsgmap7nxwkp65"; depends=[BASIX]; broken = true; }; BlockMessage = derive2 { name="BlockMessage"; version="1.0"; sha256="1jrcb9j1ikbpw098gqbcj29yhffa15xav90y6vpginmhbfpwlbf4"; depends=[]; broken = true; }; @@ -18856,8 +18976,9 @@ in with self; { CCpop = derive2 { name="CCpop"; version="1.0"; sha256="10kgw3b98r0kn74w89znq6skgk8b3ldil6yb0hn5rlcf6lazjzca"; depends=[nloptr]; broken = true; }; CDSeq = derive2 { name="CDSeq"; version="1.0.8"; sha256="06pjp9hn9ziz4wgkaj0r0zzw69r7635j10rmnl331abc4mchpazy"; depends=[Biobase clue dirmult doParallel dplyr foreach ggplot2 ggpubr gplots iterators magrittr MASS Matrix matrixStats qlcMatrix Rcpp RcppArmadillo RcppThread rlang Seurat]; broken = true; }; CEC = derive2 { name="CEC"; version="0.10.3"; sha256="0yypiy5xxrlckly4qpnf1wxg4hwza4y4da6y0jz4ldz918vskaci"; depends=[]; broken = true; }; - CGNM = derive2 { name="CGNM"; version="0.4.0"; sha256="0z9y6z2lpzzq7jzknfc84npraimkvlfm0sr5k9h3h3qjdxwfy2wk"; depends=[ggplot2 MASS]; broken = true; }; + CFC = derive2 { name="CFC"; version="1.1.2"; sha256="0k0685cgsd0lm7id6h216r4x236xn3nqj4h906qn2i0kvwmx4nda"; depends=[abind doParallel foreach Rcpp RcppArmadillo RcppProgress survival]; broken = true; }; CHCN = derive2 { name="CHCN"; version="1.5"; sha256="18n8f002w0p0l1s5mrrsyjddn10kdbb6b7jx1v9h1m81ifdbv0xb"; depends=[bitops RCurl]; broken = true; }; + CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; broken = true; }; CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; broken = true; }; CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; broken = true; }; CMC = derive2 { name="CMC"; version="1.0"; sha256="1r9a5k79fyw01yiwxq02327hpn4l1v2lp0958jj9217wxmhn3pr5"; depends=[]; broken = true; }; @@ -18894,6 +19015,7 @@ in with self; { CommunityCorrelogram = derive2 { name="CommunityCorrelogram"; version="1.0"; sha256="1wkrm5lil595sc4ih3qsf4sgvfipzlav0n7339ixqw9zxm2pg4nj"; depends=[vegan]; broken = true; }; CompLognormal = derive2 { name="CompLognormal"; version="3.0"; sha256="1dhgr9l713l2n889bpa47lbg2qab0fz0r15qa928c0b9nz688ddm"; depends=[numDeriv]; broken = true; }; CompRandFld = derive2 { name="CompRandFld"; version="1.0.3-6"; sha256="1yr1d97l6yc07jwh30j26gda15pjfcwx2z3w55dh3nr15vds0qcp"; depends=[fields mapproj maps RandomFields scatterplot3d spam]; broken = true; }; + ComparisonCR = derive2 { name="ComparisonCR"; version="1.0.4"; sha256="10xw3ppkzpc3njc409ln7g6bg33csf2ilw3f11hn60ry5xbnn82y"; depends=[boot CIFsmry cmprsk]; broken = true; }; Compounding = derive2 { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; broken = true; }; CondReg = derive2 { name="CondReg"; version="0.20"; sha256="1ffnrjfjcb66i9nyvidkcn4k9pcj4r7xanjwzcxcrj2qm39apkqx"; depends=[]; broken = true; }; ConfoundedMeta = derive2 { name="ConfoundedMeta"; version="1.3.0"; sha256="17l6dfff2v0a4p022qclrmkzi78ga9adkgxgrgk9imz0n9m9424d"; depends=[ggplot2 metafor]; broken = true; }; @@ -18906,6 +19028,7 @@ in with self; { CoxPhLb = derive2 { name="CoxPhLb"; version="1.2.0"; sha256="0jlh2k5ygj896sfx7dcw5qlb80bl64rsvqfayv0c6a107bmrzsw4"; depends=[survival]; broken = true; }; CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; broken = true; }; CreditRisk = derive2 { name="CreditRisk"; version="0.1.3"; sha256="09ks8xlsrbp3an1drcwmmd6df4fsfz61z21ma2p62a1pk0bnc86c"; depends=[fOptions]; broken = true; }; + CropScapeR = derive2 { name="CropScapeR"; version="1.1.4"; sha256="0rs428sz2fd4ysz1k5i2zkjg4vga2rczlbdd042sdjq501nk2462"; depends=[data_table dplyr httr magrittr raster RJSONIO sf]; broken = true; }; CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; broken = true; }; CytobankBridgeR = derive2 { name="CytobankBridgeR"; version="1.0.0"; sha256="0m8gxbm3p9gvdszymqx10n5rzb406r4f70a0in798c56mp2rcsl4"; depends=[CytobankAPI]; broken = true; }; D3GB = derive2 { name="D3GB"; version="1.1"; sha256="1r4hxx2qdws7c7hsnswzfh6az8mn720sk8nygilljl2ghnwpq7pa"; depends=[DBI RSQLite]; broken = true; }; @@ -18935,11 +19058,12 @@ in with self; { DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; broken = true; }; Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; broken = true; }; DepCens = derive2 { name="DepCens"; version="0.2.1"; sha256="0dqn8y4ljviy7dqknn17hi3ax2576y9w3bgkfzdg04x9czbyg450"; depends=[dlm Formula matrixStats rootSolve survival]; broken = true; }; + DetSel = derive2 { name="DetSel"; version="1.0.4"; sha256="01mpjy1cmgbrchdjl0gmrq3zx3mlkznml1qcradj2v5mgz26ifrv"; depends=[ash]; broken = true; }; + DiffNet = derive2 { name="DiffNet"; version="1.0-0"; sha256="04dvf0qxnc6jizwfjxw731j7d2fxyapk06rmqvga6h3p075q0mqk"; depends=[data_table doParallel foreach gplots Hmisc igraph lsa Matrix qlcMatrix Rcpp RcppEigen]; broken = true; }; DiffusionRgqd = derive2 { name="DiffusionRgqd"; version="0.1.3"; sha256="1gf5jpvimfrc9ccva0jk85rl4zfkbijm2305ky1rxcgm4kgw4lax"; depends=[colorspace Rcpp RcppArmadillo rgl]; broken = true; }; DiffusionRimp = derive2 { name="DiffusionRimp"; version="0.1.2"; sha256="1h7145ldlgwrrwj4l1wxdp2rbg2pm4v3pngiq0saz0xi3vpcxwl6"; depends=[colorspace Rcpp RcppArmadillo rgl]; broken = true; }; DiffusionRjgqd = derive2 { name="DiffusionRjgqd"; version="0.1.1"; sha256="1yb1jaq324qm2x8cl3bs2dflnsx8yfygpw2m3kk5hzaai9gfkqjf"; depends=[colorspace Rcpp RcppArmadillo rgl]; broken = true; }; DiscriMiner = derive2 { name="DiscriMiner"; version="0.1-29"; sha256="1ii8aa4dwfk991qdnpmkva20wvs5fqcna9030c799ybf11qpdass"; depends=[]; broken = true; }; - DistatisR = derive2 { name="DistatisR"; version="1.0.1"; sha256="0myzfki8yrk0nhgdgsqs4wjbqhzmkdil1g005hc7p4lz3gi09bfx"; depends=[car prettyGraphs]; broken = true; }; DnE = derive2 { name="DnE"; version="2.1.0"; sha256="02cbfb3m9xf24wkgqc06k3k0rx7qlqh4ma43khg6fpvif6yyahrn"; depends=[]; broken = true; }; DoE_multi_response = derive2 { name="DoE.multi.response"; version="0.1.0"; sha256="1289jlp10999kvyg5adw3dyc2mhh20i6biyqjbxd6g80a8dajknx"; depends=[DoE_wrapper]; broken = true; }; Dominance = derive2 { name="Dominance"; version="1.2.0"; sha256="1z2gcs7myf90986gzw9g3914ph5cyg6pq6k53h4z566x883q8maz"; depends=[chron igraph]; broken = true; }; @@ -18947,19 +19071,21 @@ in with self; { DrInsight = derive2 { name="DrInsight"; version="0.1.2"; sha256="1zz9i4aj0ijqfgp30wv0bvrgx2n003dysqg0pm13f7hni27819ff"; depends=[igraph qusage]; broken = true; }; DunnettTests = derive2 { name="DunnettTests"; version="2.0"; sha256="1sf0bdxays10n8jh2qy85fv7p593x58d4pas9dwlvvah0bddhggg"; depends=[mvtnorm]; broken = true; }; DySeq = derive2 { name="DySeq"; version="0.22"; sha256="1sx6mg0bcqb5ff6x305k43zx3fwd16rvxc7xb3ai5h3w7fs9zz7y"; depends=[boot MASS TraMineR]; broken = true; }; + DynComm = derive2 { name="DynComm"; version="2020.1.6"; sha256="09nhcp9rldwrybwhyg86mgpgwq4hzlpp4rm5a5gl33nnhvcdm0mx"; depends=[igraph Rcpp Rdpack]; broken = true; }; DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; broken = true; }; EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; broken = true; }; EBEN = derive2 { name="EBEN"; version="4.6"; sha256="0gcf5b2viiq69vs8bd8nhk65g9sbzgg212w7zpnz4y6cv9jkk5zz"; depends=[]; broken = true; }; EBglmnet = derive2 { name="EBglmnet"; version="4.1"; sha256="0wlscmimj74alcr8k5h1g3alvlpss4g2ah7zkpd42akam3zb4s5z"; depends=[]; broken = true; }; EDFIR = derive2 { name="EDFIR"; version="1.0"; sha256="0nv1badyg1dri6z91fvs68a72g22vdg0rpi3fkpxw527r11fvrrv"; depends=[geometry lpSolve MASS vertexenum]; broken = true; }; EILA = derive2 { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; broken = true; }; + EL = derive2 { name="EL"; version="1.1"; sha256="0a6zbsq37miy7mv1b2gn3nlddlxpl6v5338lqxa2hn8ykj4vbs63"; depends=[]; broken = true; }; EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; broken = true; }; + EMVS = derive2 { name="EMVS"; version="1.2.1"; sha256="1aikms2i77hwv6hrk8kn9wrh1v5j5zm918cwdwm5s6cy8fcqf406"; depends=[Rcpp RcppArmadillo]; broken = true; }; EPP = derive2 { name="EPP"; version="0.3.6.1"; sha256="015hp5f3nrf0hqi11cgsi43a97h9cvny4d75hfjd10zf0fj261h9"; depends=[assertthat curl deldir dplyr flexclust httr leaflet leaflet_extras maptools nngeo osrm plyr rgdal rgeos sf sp]; broken = true; }; ES = derive2 { name="ES"; version="1.0"; sha256="1rapwf6kryr6allzbjk6wmxpj9idd3xlnh87rwbh6196xb7rp8lv"; depends=[]; broken = true; }; ESEA = derive2 { name="ESEA"; version="1.0"; sha256="06r5lki32mxkznj6yxvlz0ikqcxm3jbaralv4qp9xrw6dy6yyg27"; depends=[igraph parmigene XML]; broken = true; }; EW = derive2 { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; broken = true; }; EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; broken = true; }; - EcoEnsemble = derive2 { name="EcoEnsemble"; version="1.0.0"; sha256="0nixw872ic7jmy2z4wasks3r6y01mx8k7zwfzi72s809jgx1njmi"; depends=[BH cowplot dplyr ggplot2 matrixcalc Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders tibble]; broken = true; }; EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12.1"; sha256="075kgy6cxppkclk6nj5xs1f5yv9w8cpr09xwhf2101a6wswknb88"; depends=[DEoptim operators topmodel XML]; broken = true; }; EffectsRelBaseline = derive2 { name="EffectsRelBaseline"; version="0.5"; sha256="1dsnakcrgmlx44599ii92wvhxbxrh0hij59709wsskx1x1152zvh"; depends=[]; broken = true; }; ElectionsLATAM = derive2 { name="ElectionsLATAM"; version="0.1.1"; sha256="0xs3qff1ayq12cr7xszxvzmyihs4p9vsyrwcglll794vj096ylz4"; depends=[boot dplyr foreign lgr magrittr networkD3 R6 readr readxl testthat webshot]; broken = true; }; @@ -18971,17 +19097,16 @@ in with self; { Eunomia = derive2 { name="Eunomia"; version="1.0.1"; sha256="06a42qsf3nx1pbynikkdvmbhh1rmgnfmiggdn86b3a0ij6cq0p2r"; depends=[DatabaseConnector RSQLite SqlRender]; broken = true; }; EvoRAG = derive2 { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; broken = true; }; ExGaussEstim = derive2 { name="ExGaussEstim"; version="0.1"; sha256="167y82sqqwmjaxmxag01nvg27c3gb58x8zbjr8ng01ygjc5rpkcb"; depends=[fitdistrplus gamlss_dist HI invgamma nloptr pracma]; broken = true; }; - ExomeDepth = derive2 { name="ExomeDepth"; version="1.1.15"; sha256="1ljswn8bimzhl7dxy7nb2jmwq9v7vpp4y1jynp8djrjpdx9wnaqi"; depends=[aod Biostrings dplyr GenomicAlignments GenomicRanges IRanges magrittr Rsamtools VGAM]; broken = true; }; FAMILY = derive2 { name="FAMILY"; version="0.1.19"; sha256="1912l2zj2cmh8yx8lkg8fpgvfddn6wbi1vrr4yx04mh73gk1s5mk"; depends=[pheatmap pROC]; broken = true; }; FBN = derive2 { name="FBN"; version="1.5.1"; sha256="0723krsddfi4cy2i3vd6pi483qjxniychnsi9r8nw7dm052nb4sf"; depends=[]; broken = true; }; FCGR = derive2 { name="FCGR"; version="1.0-0"; sha256="015nnnc9fasx0qjrc3lbxv14rqwyx36xzsw9076grwm5pqahrdsb"; depends=[kerdiest KernSmooth MASS mgcv nlme pspline sfsmisc]; broken = true; }; FDRreg = derive2 { name="FDRreg"; version="0.1"; sha256="17hppvyncbmyqpi7sin9qsrgffrnx8xjcla2ra6y0sqzam1145y4"; depends=[fda mosaic Rcpp RcppArmadillo]; broken = true; }; FField = derive2 { name="FField"; version="0.1.0"; sha256="05q16v2vv64qhbnf2l66dwzmvgzyaq8vxwwdabp534bw7z7zpi8q"; depends=[]; broken = true; }; FMAdist = derive2 { name="FMAdist"; version="0.1.0"; sha256="0aa4sw93ia6cp386hrq6x448x4w0p6k198rjaqs474j25gqgxrv0"; depends=[EnvStats extraDistr fitdistrplus MASS quadprog STAR]; broken = true; }; + FORTLS = derive2 { name="FORTLS"; version="1.1.0"; sha256="08g674ig8fn2mlwqrhd5lkvy64n9jqvla7nflswpbp4vhjgcmy9k"; depends=[dbscan Distance htmlwidgets lidR moments plotly progress raster Rcpp RcppEigen RCSF scales sf sp tidyr VoxR vroom]; broken = true; }; FREG = derive2 { name="FREG"; version="1.1"; sha256="1f9ss0aj6w6n0x4np6wi3ynhhcibr5zk54gzbkgpk6q3y7pv0qs1"; depends=[fda]; broken = true; }; FacPad = derive2 { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; broken = true; }; FactMixtAnalysis = derive2 { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; broken = true; }; - FamEvent = derive2 { name="FamEvent"; version="2.1"; sha256="1bwi91z8xyb3xj8fwbshgdq7l1pik2dsy6ljzwy1ymd0xz0q7f5a"; depends=[eha kinship2 MASS pracma survival truncnorm]; broken = true; }; Familias = derive2 { name="Familias"; version="2.4"; sha256="1k6ig2zfkr1a4s3s85ygixmmsrb5m8vqqab8l5ffkspgjvh4dfz2"; depends=[kinship2 paramlink Rsolnp]; broken = true; }; FastHCS = derive2 { name="FastHCS"; version="0.0.7"; sha256="0l3fi3siwg2jhsj0jbhgccx8pnwd8h8f4z37g1najb41hw8dwn8d"; depends=[matrixStats Rcpp RcppEigen]; broken = true; }; FastLZeroSpikeInference = derive2 { name="FastLZeroSpikeInference"; version="2018.12.10"; sha256="0ybpmns7bc1j5xzqjl7734grihmvvpa3h52gixv3h70l0r89d8ys"; depends=[]; broken = true; }; @@ -18993,6 +19118,7 @@ in with self; { FitARMA = derive2 { name="FitARMA"; version="1.6.1"; sha256="02di0pkz6hh92glpn3li6z9azkcqa64ja8zfpy0mkh1l97mw6jsv"; depends=[FitAR]; broken = true; }; FlywayNet = derive2 { name="FlywayNet"; version="0.1.0"; sha256="00sp3m3iv6qifrkk0rncmzidv15b5fj138g0mai95lp280b040va"; depends=[EasyABC igraph modeest Rcpp]; broken = true; }; ForImp = derive2 { name="ForImp"; version="1.0.3"; sha256="0ai4i6q233sdsi8xilpbkxjqdf4pxw93clkdkhcxal6q43rnf7vd"; depends=[homals mvtnorm sampling]; broken = true; }; + ForestGapR = derive2 { name="ForestGapR"; version="0.1.6"; sha256="1m3fn7gqwch14nilid9fmxwlm4x9qslr3czb44iwiff9i69csnvk"; depends=[igraph poweRlaw raster rgeos sp spatstat_core spatstat_geom VGAM viridis]; broken = true; }; ForwardSearch = derive2 { name="ForwardSearch"; version="1.0"; sha256="0yd47832piqxzjxgl7bc8pn0c8f7vbgsm9z6894rzyi615kjl70b"; depends=[robustbase]; broken = true; }; FunCluster = derive2 { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; broken = true; }; FuzzyToolkitUoN = derive2 { name="FuzzyToolkitUoN"; version="1.0"; sha256="104s45mmlam67vwpshhpns2mgwvmhnbj8w1918jyk2r5mqibwz06"; depends=[]; broken = true; }; @@ -19014,20 +19140,21 @@ in with self; { GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; broken = true; }; GaDiFPT = derive2 { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; broken = true; }; GaSP = derive2 { name="GaSP"; version="1.0.1"; sha256="0l1a5w3wphm1748qmh3abv9yd1w92wg7irqpgdg6pc7598dvlkr9"; depends=[]; broken = true; }; - GauPro = derive2 { name="GauPro"; version="0.2.4"; sha256="1fll93r25293xdwv28g9my627f736kawr0ji1vxfc3q275zfy7lg"; depends=[lbfgs R6 Rcpp RcppArmadillo]; broken = true; }; GenForImp = derive2 { name="GenForImp"; version="1.0"; sha256="1wcvi52fclcm6kknbjh4r9bpkc2rg8nk6cddnf5j8zqbvrwf4k5x"; depends=[mvtnorm sn]; broken = true; }; GenHMM1d = derive2 { name="GenHMM1d"; version="0.1.0"; sha256="0liqfjx17xs8si15yrb4032ac33ibxn2xm010b244gfhl1wr2ar5"; depends=[actuar doParallel EnvStats extraDistr foreach ggplot2 matrixcalc reshape2 rmutil ssdtools VaRES VGAM]; broken = true; }; GenKern = derive2 { name="GenKern"; version="1.2-60"; sha256="12qmd9ydizl7h178ndn25i4xscjnrssl5k7bifwv94m0wrgj4x6c"; depends=[KernSmooth]; broken = true; }; - GenWin = derive2 { name="GenWin"; version="0.1"; sha256="0jm537i4jn3azdpvd50y9p0fssfx2ym2n36d3zgnfd32gqckz3s4"; depends=[pspline]; broken = true; }; GeneBook = derive2 { name="GeneBook"; version="1.0"; sha256="1cg8zyr7rbshj3shhzkrxs910dsz4brhh51jvn2qzipzd8dbvxiv"; depends=[dplyr repmis stringr svDialogs]; broken = true; }; GeneClusterNet = derive2 { name="GeneClusterNet"; version="1.0.1"; sha256="1xi4c041c4m39f9wb5fklgmhi6ng78iwzzqch5xk9hx5blq6zd4m"; depends=[G1DBN igraph MASS]; broken = true; }; + GenomicMating = derive2 { name="GenomicMating"; version="2.0"; sha256="02v1pkarmardf7g8hf2n4jj4cq4707g5lcc7gnwsiyyh7pknd1y6"; depends=[dplyr emoa kohonen LowRankQP magrittr plotly qtl Rcpp RcppArmadillo scatterplot3d SOMbrero]; broken = true; }; GenomicTools = derive2 { name="GenomicTools"; version="0.2.9.7"; sha256="196shxbrcgiwaa7aav2aipsbj1smrkbhinn44aw9qfvz2x9zdz0m"; depends=[circlize data_table GenomicTools_fileHandler gMWT Rcpp RcppArmadillo snpStats stringr]; broken = true; }; GeoDE = derive2 { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; broken = true; }; GeoLight = derive2 { name="GeoLight"; version="2.0.0"; sha256="1i49hyj3f5rcw0s6j2csnfwc6mnp5zn44vxjnk05wdkpw6dpvx5i"; depends=[changepoint fields maps MASS]; broken = true; }; + GeoTcgaData = derive2 { name="GeoTcgaData"; version="1.1.1.992"; sha256="0xzz5sg9ywmpwym50hbvb1z7f8wwbbr4shiir8kj4mwf22snsk6d"; depends=[cqn data_table dplyr magrittr plyr topconfects]; broken = true; }; GetR = derive2 { name="GetR"; version="0.1"; sha256="1b2wirhz4nhvmf863czwb8z8b42ilsyjjrg9rc4nd9b7nz50bmjg"; depends=[party]; broken = true; }; GibbsACOV = derive2 { name="GibbsACOV"; version="1.1"; sha256="1ikcdsf72sn1zgk527zmxw3zjhx0yvkal6dv001cgkv202842kll"; depends=[MASS]; broken = true; }; GlobalDeviance = derive2 { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; broken = true; }; - GroupSeq = derive2 { name="GroupSeq"; version="1.4.0"; sha256="0dgm53wagwfsmv308ipx7v29qh7p5xwvbnni5zrc3a575ch1b7hb"; depends=[container mvtnorm tcltk2]; broken = true; }; + GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; broken = true; }; + GmAMisc = derive2 { name="GmAMisc"; version="1.2.1"; sha256="0rvdphdgk1bdfamwf6spy5k9qa5ws92mvf3q3dlhn6qfazp7j4hr"; depends=[caTools classInt cluster coin corrplot DescTools dismo ggplot2 ggrepel gridExtra Hmisc InPosition kimisc lsr maptools plyr pROC raster RcmdrMisc rgdal rgeos sp spatstat_core spatstat_geom spatstat_random]; broken = true; }; GuessCompx = derive2 { name="GuessCompx"; version="1.0.3"; sha256="1xbkh1wh2z0n964w8lwi7q4rr7mls0awf5k7n5jjklhq4b6gswic"; depends=[boot dplyr ggplot2 lubridate reshape2]; broken = true; }; GxM = derive2 { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[minqa nlme Rcpp]; broken = true; }; HAPim = derive2 { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixilb9zi1dwnvc4v7d726g0lvn80pg"; depends=[]; broken = true; }; @@ -19061,7 +19188,7 @@ in with self; { ICAFF = derive2 { name="ICAFF"; version="1.0.1"; sha256="0zazx4nv81s75appg10aayks04mx6m5n9yf5hqrbxh3yj68vzxfy"; depends=[]; broken = true; }; ICBayes = derive2 { name="ICBayes"; version="1.2"; sha256="1hdh7g4nk6yy0xz9564vpvh1blrw30lvyw2wc5mmgn78kwjqla34"; depends=[coda HI survival]; broken = true; }; ICE = derive2 { name="ICE"; version="0.69"; sha256="04p8lakaha28mdh965w0ppyxfrz5ssi1n9xifvsbn3ihdra67rip"; depends=[KernSmooth]; broken = true; }; - ICSsmoothing = derive2 { name="ICSsmoothing"; version="1.2.5"; sha256="08m8p6y5zk54ha3wp5x9xbx6f2xkkqx232hsan1f1s8k9j3q5avd"; depends=[ggplot2 polynom]; broken = true; }; + IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.3.12"; sha256="0gkicafnzq8aq9bmbbr9n868sh91dwkhs1dk4wry5vkbfaawfxis"; depends=[doParallel foreach igraph spatstat_core spatstat_geom]; broken = true; }; IGG = derive2 { name="IGG"; version="1.0"; sha256="1cibb9z18xc1zx1813lk14n6p5am84hm7w0hkrsif4j3p89lrwif"; depends=[GIGrvg glmnet MASS Matrix pscl]; broken = true; }; IGP = derive2 { name="IGP"; version="0.2.0"; sha256="1hsyl6cjm84w4f4v0gw4hi5y483r8v78xb3k3h1ixix9ymjqr8y5"; depends=[R6 reticulate]; broken = true; }; ILS = derive2 { name="ILS"; version="0.2"; sha256="0lj3ripkaq6jn00lpxjihjhm8g1gbkppmb1y9kkrymphg80k1by7"; depends=[depthTools fda_usc lattice MASS multcomp]; broken = true; }; @@ -19080,6 +19207,7 @@ in with self; { IgorR = derive2 { name="IgorR"; version="0.8.1"; sha256="1lkiz3gxj8i1xbr5jp69z21rpk7kz3a68h29inp1qa7zi7gikmgx"; depends=[bitops]; broken = true; }; Imap = derive2 { name="Imap"; version="1.32"; sha256="0b4w0mw9ljw6zxwvi0qzb08yq9n169lzgkdcwizrd07x9k9xjxs7"; depends=[]; broken = true; }; InfDim = derive2 { name="InfDim"; version="1.0"; sha256="0rh3ch0m015xjkxy08vf9pc6q7azjc6sgicd2j6cwh611pqq39wq"; depends=[]; broken = true; }; + InformationValue = derive2 { name="InformationValue"; version="1.2.3"; sha256="1b5g2wyp7x5cdhmf4325n3q7afa6i352lh80j28c8s4356pr3w9j"; depends=[data_table ggplot2]; broken = true; }; IntLik = derive2 { name="IntLik"; version="1.0"; sha256="13ww5bsbf1vnpaip0w53rw99a8hxzziibj7j66cm31jmi8l6fznf"; depends=[maxLik]; broken = true; }; Interact = derive2 { name="Interact"; version="1.1"; sha256="1g9zhafdpr7j410bi8p03d8x9f8m3n329x8v01yk15f65fp7pl1d"; depends=[]; broken = true; }; InteractiveIGraph = derive2 { name="InteractiveIGraph"; version="1.0.6.1"; sha256="0srxlp77xqq0vw2phfv7zcnqswi2i5nzkpqbpa5limqx00jd12zy"; depends=[igraph]; broken = true; }; @@ -19113,8 +19241,8 @@ in with self; { LPTime = derive2 { name="LPTime"; version="1.0-2"; sha256="08lb6884kj9pg12mzx67fdnqb86x5s6yzb72hh3nrz50awj1f8nn"; depends=[orthopolynom]; broken = true; }; LSC = derive2 { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[fields gam LICORS Matrix RColorBrewer]; broken = true; }; LadR = derive2 { name="LadR"; version="1.0.6"; sha256="14n58y1p14wwxwwrbdqv2kkplma8ficpqx8nd22qp931idijpsji"; depends=[L1pack]; broken = true; }; - LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.5.0"; sha256="06mvdrdyl0rh9rwd0jxww0sycadcp7cj08hq35q6vyzq0jkxn2xf"; depends=[plyr rLakeAnalyzer]; broken = true; }; Lambda4 = derive2 { name="Lambda4"; version="3.0"; sha256="04ikkflfr0nmy1gr3gfldlh2v8mpl82k1wwnzp57d2kn75m9vbxz"; depends=[]; broken = true; }; + LiblineaR_ACF = derive2 { name="LiblineaR.ACF"; version="1.94-2"; sha256="1ldkb63yhm1ki8i585wp5byx6y0kvclwy3ncacgcdqqk0p41cyi6"; depends=[]; broken = true; }; LindleyR = derive2 { name="LindleyR"; version="1.1.0"; sha256="163i604q683znp6q544hnv4vibygwvsxcfhh8m7iaqr42li3c0ak"; depends=[lamW]; broken = true; }; LocFDRPois = derive2 { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; broken = true; }; LogisticDx = derive2 { name="LogisticDx"; version="0.3"; sha256="1hry32grqwlarp0cplx8szf4pf7ml1nxd11ahffmr72ihcv5ckga"; depends=[aod data_table pROC RColorBrewer rms speedglm statmod]; broken = true; }; @@ -19133,6 +19261,7 @@ in with self; { MC2toPath = derive2 { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; broken = true; }; MCDM = derive2 { name="MCDM"; version="1.2"; sha256="0r27y9mqvfnv1m0yi2xdyjr4y1s43d5yav960kz2xa732hrrxw01"; depends=[RankAggreg]; broken = true; }; MCMChybridGP = derive2 { name="MCMChybridGP"; version="5.4"; sha256="19nbch76g7jf53nrb1lyzr3zd0z6rpz2k86mq1r9aidwwxh81g7p"; depends=[MASS]; broken = true; }; + MCTM = derive2 { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; broken = true; }; MConjoint = derive2 { name="MConjoint"; version="0.1"; sha256="02yik28mhvd4rfqwrprdbdjx9c49ds55fh042bsjajs2ip467w5c"; depends=[]; broken = true; }; MF = derive2 { name="MF"; version="4.3.2"; sha256="1arnhyqf1cjvngygcpqk2g4d52949rhkjmclbaskyxcrvp62qln0"; depends=[]; broken = true; }; MFHD = derive2 { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[deldir depth depthTools fda_usc matrixStats]; broken = true; }; @@ -19152,9 +19281,11 @@ in with self; { MLRShiny = derive2 { name="MLRShiny"; version="0.1.0"; sha256="06zcyz8l4754sjbcql3jd3nq1d2lgj92p5h2bh708z52mww71isw"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; broken = true; }; MLRShiny2 = derive2 { name="MLRShiny2"; version="0.1.0"; sha256="1ygamp0ldz1i0w2xyi205rpd1gd5asw61l36z06j41ghdyiz1lww"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; broken = true; }; MODISSnow = derive2 { name="MODISSnow"; version="0.1.0.0"; sha256="1p0mil074gapw6v8paw9595rzp85hxrfsc65llh0ljalmacwgx04"; depends=[gdalUtils lubridate raster RCurl]; broken = true; }; + MOEADr = derive2 { name="MOEADr"; version="1.1.1"; sha256="0aqkqw5ph5rvsgpasc94i264lxapr37gpjhk4rkkynph2gnvq1zx"; depends=[assertthat FNN]; broken = true; }; MOrder = derive2 { name="MOrder"; version="0.1"; sha256="1vhy20xyvfc18f04hvlb1jm2n0caaz8ysy13w2rra5i4kjdvz52i"; depends=[]; broken = true; }; MPAgenomics = derive2 { name="MPAgenomics"; version="1.2.3"; sha256="0096jy94zpbbd2n862hc4m3i4s7vpl2q3vybx96hvv6qi1ny47cm"; depends=[changepoint glmnet HDPenReg R_utils spikeslab]; broken = true; }; MPINet = derive2 { name="MPINet"; version="1.0"; sha256="1zw3piqhhpagg5qahc2xahxxfdwdk8w94aass1virlpl0f52ik8s"; depends=[BiasedUrn mgcv]; broken = true; }; + MPR_genotyping = derive2 { name="MPR.genotyping"; version="0.8"; sha256="0lsrbks7nhfnrmk8kclh09rc132j3divjxrzjfrg8zijbzkfx1pn"; depends=[qtl]; broken = true; }; MPkn = derive2 { name="MPkn"; version="0.1.0"; sha256="0nvd6sv1wypcmphm0wcymbibcxrqzx3c9s9b191p1pmxyz607vxv"; depends=[]; broken = true; }; MRCV = derive2 { name="MRCV"; version="0.3-3"; sha256="0m29mpsd3kackwrawvahi22j0aghfb12x9j18xk4x1w4bkpiscmf"; depends=[tables]; broken = true; }; MRH = derive2 { name="MRH"; version="2.2"; sha256="1icwlq8js58g9fkiq7fwjg8r97ca47xl3dscnhnga99gkgsfgjwl"; depends=[coda KMsurv survival]; broken = true; }; @@ -19163,6 +19294,7 @@ in with self; { MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; broken = true; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; broken = true; }; MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; broken = true; }; + MagmaClustR = derive2 { name="MagmaClustR"; version="1.0.1"; sha256="0gf0xlsh5wkvbp331z7c55ypfkg9rmmakykbqliswiyrfgbczk9g"; depends=[broom dplyr ggplot2 magrittr mvtnorm Rcpp rlang tibble tidyr tidyselect]; broken = true; }; Mapinguari = derive2 { name="Mapinguari"; version="1.0.0"; sha256="1jfqinfr6wkpmkp4jm9ixgawcywm3n1ni03h6zngvx74saz7kd3g"; depends=[dplyr magrittr raster rgdal rlang stringr testthat]; broken = true; }; MaskJointDensity = derive2 { name="MaskJointDensity"; version="1.0"; sha256="0nxhsz57cw96in0sg5xg7sicv920kcnxr2rikn39y2qk4vrw6r78"; depends=[ks MASS np plyr]; broken = true; }; MatTransMix = derive2 { name="MatTransMix"; version="0.1.15"; sha256="1s2wmhiqn024x9l217xak3wp3dbd3mfrih70xc5mc1b4555f2fbm"; depends=[mvtnorm]; broken = true; }; @@ -19182,10 +19314,10 @@ in with self; { Meth27QC = derive2 { name="Meth27QC"; version="1.1"; sha256="0ad30svs2kjzmmyvcm0jmv64iyq7slp1x1xl35h2rv1b6zbd4658"; depends=[gplots]; broken = true; }; Methplot = derive2 { name="Methplot"; version="1.0"; sha256="0aaqss9zfn55qi45jffxkksnkw510npjnkygafx49vl77bkagqh5"; depends=[ggplot2 reshape]; broken = true; }; MethylCapSig = derive2 { name="MethylCapSig"; version="1.0.1"; sha256="16ch9aldr6a9jn42h387n7qvnzs0yx28f2yj6xq0kp476q7rf4ql"; depends=[geepack]; broken = true; }; - MfUSampler = derive2 { name="MfUSampler"; version="1.0.6"; sha256="0lw60dnlkcs59wf5yzqj3yq8k529s5mrjj33nyvzqgqqmln9v1x8"; depends=[ars coda HI]; broken = true; }; MiST = derive2 { name="MiST"; version="1.0"; sha256="0gqln792gixqfh201xciaygmxbafa0wyv5gpbg9w5zkbbv44wrfk"; depends=[CompQuadForm]; broken = true; }; MicroSEC = derive2 { name="MicroSEC"; version="1.1.3"; sha256="1imdxm15f792xw5kc9lhry5jsw739j6y3f2fs64abj22hqxfwypi"; depends=[BiocGenerics Biostrings data_table dplyr GenomeInfoDb GenomicAlignments gtools magrittr openxlsx R_utils Rsamtools stringr tidyr]; broken = true; }; Miney = derive2 { name="Miney"; version="0.1"; sha256="0sgln0653rgglinr8rns5s2az0lgyp9slmynyhhhs265grkhrfj0"; depends=[]; broken = true; }; + MixMAP = derive2 { name="MixMAP"; version="1.3.4"; sha256="0gxghym5ghbyxf589hda2fhv5l3x5jvm6i40x5xdwx4hadcn8k9a"; depends=[lme4]; broken = true; }; ModelGood = derive2 { name="ModelGood"; version="1.0.9"; sha256="1y99a7bgwx167pncxj00lbw3cdjj23fhhzl8r24hwnhxr984kvzl"; depends=[prodlim]; broken = true; }; ModelMap = derive2 { name="ModelMap"; version="3.4.0.2"; sha256="1vca7wri0djk4v0gjnivg4k8qplrq0qlhq7vy801w8ffdyg86qag"; depends=[corrplot fields HandTill2001 mgcv PresenceAbsence randomForest raster rgdal]; broken = true; }; MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; broken = true; }; @@ -19213,6 +19345,7 @@ in with self; { NTS = derive2 { name="NTS"; version="1.1.2"; sha256="02gh9yqflwgqws7a14wwb1y7qx0whw4ss1kkfgh9jp6bxc2dclnf"; depends=[dlm MASS MSwM Rdpack tensor]; broken = true; }; NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; broken = true; }; NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; broken = true; }; + NetLogoR = derive2 { name="NetLogoR"; version="0.3.11"; sha256="0pppcpij4wn1gig7lyh122x52dx8x1dy98v5cphmrap8mpj4x7h2"; depends=[abind CircStats data_table matrixStats quickPlot raster sf sp SpaDES_tools]; broken = true; }; NetworkReg = derive2 { name="NetworkReg"; version="1.0"; sha256="0ymbigvl1n5348g77jqs1bcda00kdqrm7zifc0ibh5mwsrx6cmds"; depends=[Matrix randnet RSpectra]; broken = true; }; NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; broken = true; }; NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; broken = true; }; @@ -19238,6 +19371,7 @@ in with self; { OutlierDC = derive2 { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[Formula quantreg survival]; broken = true; }; OutlierDM = derive2 { name="OutlierDM"; version="1.1.1"; sha256="0n8iq464ryc3v4wms7cdka39870w5pg29z9v8gmdsp4d9cfsx9v4"; depends=[MatrixModels outliers pcaPP quantreg]; broken = true; }; PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; broken = true; }; + PAMA = derive2 { name="PAMA"; version="1.2.0"; sha256="12fvkcdkn66gzr193fq9byf64qlq2x9dkjv9hpfw770l4yw496jn"; depends=[ExtMallows mc2d PerMallows rankdist Rcpp]; broken = true; }; PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; broken = true; }; PCObw = derive2 { name="PCObw"; version="0.0.0"; sha256="1mz9fpd8k0fs14gvs9bhzrpydz200fsg52njaw2nr08184q78r4y"; depends=[Rcpp RcppEigen]; broken = true; }; PEMM = derive2 { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; broken = true; }; @@ -19257,6 +19391,7 @@ in with self; { PathSelectMP = derive2 { name="PathSelectMP"; version="1.1"; sha256="036b70bpylmibny6dny79f7gdzn78arqgl2hfs031vygw63yyh9b"; depends=[mice MplusAutomation]; broken = true; }; PatternClass = derive2 { name="PatternClass"; version="2.0.1"; sha256="1xwlk6shms38nqxad3d15254wgnkfzy7jyf5w9bbm96kg05mndbz"; depends=[landscapemetrics raster]; broken = true; }; PedCNV = derive2 { name="PedCNV"; version="0.1"; sha256="09qxcjzwdgzdkbj28rzmfv7k3q2qsiapnvx3m45a835r57h5gynp"; depends=[ggplot2 Rcpp RcppArmadillo]; broken = true; }; + PerMallows = derive2 { name="PerMallows"; version="1.13"; sha256="0ny2vc8f0npixaw1kp2d93xr4g46nsg8jjwvi6afv9xjvaz0i6wy"; depends=[Rcpp]; broken = true; }; PharmPow = derive2 { name="PharmPow"; version="1.0"; sha256="0gabkd8p4zsig9p697lyk8m2jxb5abjk81rpzd5ih1yk1qanhsn5"; depends=[scatterplot3d]; broken = true; }; PhyloMeasures = derive2 { name="PhyloMeasures"; version="2.1"; sha256="01axs78s10y1bkx8dbs9vvnphdzik7hpibkwyib1x9mznmyg90hr"; depends=[ape]; broken = true; }; PivotalR = derive2 { name="PivotalR"; version="0.1.18.5"; sha256="1xcr7769d9jixq0lbc89jqzzxnnzxb8gjlws2l6cjm40hcid2yc9"; depends=[Matrix semver]; broken = true; }; @@ -19264,6 +19399,7 @@ in with self; { PlotRegionHighlighter = derive2 { name="PlotRegionHighlighter"; version="1.0"; sha256="0n1nkfr3sdaq6f5p9kgx4slrsvhpdbax3rinrkfkb1vnjj4swj77"; depends=[]; broken = true; }; PoissonSeq = derive2 { name="PoissonSeq"; version="1.1.2"; sha256="1hhx0gv06cp6hm6h36mqy411qn9x15y45crpzbyf8crfs85c6gbg"; depends=[combinat]; broken = true; }; PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; broken = true; }; + PopGenome = derive2 { name="PopGenome"; version="2.7.5"; sha256="0xdwgih1n7bkykbzrnp293yzrlj80vr2v6rlsww61nxlhynbh9yn"; depends=[ff]; broken = true; }; PoweR = derive2 { name="PoweR"; version="1.0.7"; sha256="040wc7hxa8y6bm1rs7ip2skdxmmwksxkyb6xzqgdjp8m7a25fppb"; depends=[Rcpp RcppArmadillo]; broken = true; }; PredictiveRegression = derive2 { name="PredictiveRegression"; version="0.1-4"; sha256="15vkisj3q4hinc3d537s8inhj3wk62q67qhy050xmp9j563ainmd"; depends=[]; broken = true; }; PriorCD = derive2 { name="PriorCD"; version="0.1.0"; sha256="1mb50w2i8sfxjzqd5xnfysn3jnzkkyv6l8algxnp0xpyhcq41pfs"; depends=[dplyr igraph ROCR visNetwork]; broken = true; }; @@ -19274,6 +19410,7 @@ in with self; { PurBayes = derive2 { name="PurBayes"; version="1.3"; sha256="0nbm4cyrwfbwwbjbjkylr86cshaqbvbif6dkp4fag8kbcgyyx5qh"; depends=[rjags]; broken = true; }; QBAsyDist = derive2 { name="QBAsyDist"; version="0.1.2"; sha256="1yql29npaq9yz02bv3hqf5m2mhscjms7qqf4vlaxm8s665rxcxad"; depends=[ald Deriv GoFKernel locpol nloptr quantreg scdensity zipfR]; broken = true; }; QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; broken = true; }; + QPmin = derive2 { name="QPmin"; version="0.5-1"; sha256="1hfvbi2qfynnkg2pmr7qsw75bmijwglnxchbzxcbikm5yw3sd2mz"; depends=[Matrix]; broken = true; }; QuACN = derive2 { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat graph igraph RBGL]; broken = true; }; QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; broken = true; }; QuantTools = derive2 { name="QuantTools"; version="0.5.7.1"; sha256="1nkf7ihzfwgz7svh1jybgcvqwbim2dqzi00l4m9pma463va4q19d"; depends=[data_table fasttime R6 Rcpp RCurl readxl]; broken = true; }; @@ -19294,6 +19431,7 @@ in with self; { RDFTensor = derive2 { name="RDFTensor"; version="1.3"; sha256="1kfhhn0lb1r61bkgxn7rv1smgk8b7vxbc8y97hdmg5argiywc65i"; depends=[doParallel foreach Matrix pracma]; broken = true; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; broken = true; }; RDSTK = derive2 { name="RDSTK"; version="1.1"; sha256="07vfhsyah8vpvgfxfnmp5py1pxf4vvfzy8jk7zp1x2gl6dz2g7hq"; depends=[plyr RCurl rjson]; broken = true; }; + REREFACT = derive2 { name="REREFACT"; version="1.0"; sha256="0nggva4qfqlcs58df3sgiigw0z75l5kg8c1yh0k5qsvjnhiq19vn"; depends=[combinat gdata Matrix psych]; broken = true; }; REST = derive2 { name="REST"; version="1.0.1"; sha256="16v89z7p9qkg7bsypf9vkrnbmb2n7gw3fqnfzbyxwj496wzxdv1x"; depends=[Rcmdr]; broken = true; }; RFGLS = derive2 { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; broken = true; }; RFreak = derive2 { name="RFreak"; version="0.3-0"; sha256="1dmllxb6yjkfkn34f07j2g7w5m63b5d10lh9xsmxyfk23b8l3x0x"; depends=[rJava]; broken = true; }; @@ -19311,9 +19449,10 @@ in with self; { ROP = derive2 { name="ROP"; version="1.0"; sha256="12gh83r3hp1qdmw3p5rr1wfhsh90pirx67q456gl9ai6zgd8nkq8"; depends=[ROCR]; broken = true; }; RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; broken = true; }; RPS = derive2 { name="RPS"; version="1.0.1"; sha256="16n6wknw2m56kwi6rswgxjwjqblhaz5gyw94f96a7l6navqnvlp4"; depends=[ape geomorph Gmedian igraph MASS matlab]; broken = true; }; - RRreg = derive2 { name="RRreg"; version="0.7.3"; sha256="1nk2gg41bdhfnz7plkj4rnzl40sd6jd5z9843kxijp9ymagimwx4"; depends=[doParallel foreach lme4]; broken = true; }; RSCABS = derive2 { name="RSCABS"; version="0.9.5"; sha256="193wbf1v18xv098i6abpglb239788d9gjzqbn8p3aai0la6y1pk3"; depends=[gWidgets2 gWidgets2RGtk2 R2HTML RGtk2]; broken = true; }; RSPS = derive2 { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[gridExtra lattice plyr]; broken = true; }; + RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; broken = true; }; + RSurvey = derive2 { name="RSurvey"; version="0.9.3"; sha256="0yk969jdvpgv01zbmk4zyxcmrbdizh37bddj1k128ndyf191z37x"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; broken = true; }; RSwissMaps = derive2 { name="RSwissMaps"; version="0.1.0.1"; sha256="16sdd0115793yj74i9m64yfxxn3gkk4nvb0qk2w8j7jjbqhflis0"; depends=[downloader dplyr ggplot2]; broken = true; }; RTConnect = derive2 { name="RTConnect"; version="0.1.4"; sha256="1000jmmqzyhl6vh1ii75jdh88s9inaz52gvfwcin2k2zr7bi91ba"; depends=[]; broken = true; }; RTextureMetrics = derive2 { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; broken = true; }; @@ -19327,8 +19466,8 @@ in with self; { Rambo = derive2 { name="Rambo"; version="1.1.1"; sha256="036rvjj6gcnf2gg5xl55n5p8j1pzifb9wmlpwnymz1csxgkl477i"; depends=[sna]; broken = true; }; RandomCoefficients = derive2 { name="RandomCoefficients"; version="0.0.2"; sha256="04l0aczrlbkjk0687w2gxs85ia71yy69mgankwkl37ksznh6y81m"; depends=[fourierin ks orthopolynom polynom RCEIM rdetools robustbase sfsmisc snowfall statmod tmvtnorm VGAM]; broken = true; }; RandomFields = derive2 { name="RandomFields"; version="3.3.14"; sha256="0c5r7l642cw56km56ijachnqhjh5k0izy03cl14rvbwkpywh09i4"; depends=[RandomFieldsUtils sp]; broken = true; }; + RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="1.2.5"; sha256="0bjfz3bla6pr7wq4mqqcd4gmxqdx32gci4f71arfski31yx8ihlc"; depends=[]; broken = true; }; Rbitcoin = derive2 { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; broken = true; }; - RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; broken = true; }; RcmdrPlugin_FuzzyClust = derive2 { name="RcmdrPlugin.FuzzyClust"; version="1.1"; sha256="1lg6k3h4n45s6wjkl3ycwfngfr2i6mkhirifhbazsvv297bg0iba"; depends=[clue doParallel foreach ggplot2 iterators MASS Rcmdr reshape2 tcltk2 tkrplot]; broken = true; }; RcmdrPlugin_IPSUR = derive2 { name="RcmdrPlugin.IPSUR"; version="0.2-1.1"; sha256="0dbdsxdxhxm79cq7hi0rh8qphan73521lmivcnb4ca8g6ha2y32v"; depends=[Rcmdr]; broken = true; }; RcmdrPlugin_SLC = derive2 { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[Rcmdr SLC]; broken = true; }; @@ -19349,12 +19488,13 @@ in with self; { RegClust = derive2 { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; broken = true; }; RelValAnalysis = derive2 { name="RelValAnalysis"; version="1.0"; sha256="1jl1gfj44gfkmc1yp6g5wwn4miydwpvxwrg76rnkv9454zrc5pvp"; depends=[zoo]; broken = true; }; Reliability = derive2 { name="Reliability"; version="0.0-2"; sha256="12zsicgbjqih3grbs62pw37x8wlkmnyc7g0yz6bqnfb4ym2yb7fg"; depends=[]; broken = true; }; + ReorderCluster = derive2 { name="ReorderCluster"; version="2.0"; sha256="0zq143xvv2br7016f9b1501ymcpkjqm3al1dn5qfm21axyi2p1iq"; depends=[gplots gtools Rcpp]; broken = true; }; RepeatedHighDim = derive2 { name="RepeatedHighDim"; version="2.0.0"; sha256="1n9w4jb25pm0mmsahlfhkp9jmhgp5b21l1g85gm2wbxqkjsg7g0g"; depends=[MASS nlme]; broken = true; }; - RevGadgets = derive2 { name="RevGadgets"; version="1.0.0"; sha256="0k17flvax4cq9cvl3fsyv5ya0bndikxbzdmk87v5xz3czf31kk81"; depends=[ape deeptime dplyr ggimage gginnards ggplot2 ggplotify ggpp ggthemes ggtree phytools png reshape tibble tidyr tidytree treeio]; broken = true; }; Rhpc = derive2 { name="Rhpc"; version="0.21-247"; sha256="0r4zikqzkcyyvywxq1s8jcq6h559mxilkmzpnl79781hh537jvii"; depends=[]; broken = true; }; RichR = derive2 { name="RichR"; version="1.0.0"; sha256="0z0ri90jqdmw0vwxd1b4wr9if5cgm1gqpf6g9p1fdvncf4sdi9by"; depends=[magrittr metap plyr reshape2]; broken = true; }; RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; broken = true; }; Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; broken = true; }; + Rlda = derive2 { name="Rlda"; version="0.2.6"; sha256="0i8n01h9072q339p1kiqhcpwphw0d2x6bsszbhgfqc2b160dk2bl"; depends=[coda doParallel foreach gtools Rcpp RcppArmadillo RcppProgress]; broken = true; }; Rmagic = derive2 { name="Rmagic"; version="2.0.3"; sha256="0g2f887v820rjyjzcahfrnjvif8iwbhnfnjpd4ib3d9lps69agx1"; depends=[ggplot2 Matrix reticulate]; broken = true; }; RmixmodCombi = derive2 { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; broken = true; }; RobRSVD = derive2 { name="RobRSVD"; version="1.0"; sha256="07z5fw8j5lq7nyxgkvb9i4iwb5inddz2ib4m2bjx6q4c1ricpqz9"; depends=[]; broken = true; }; @@ -19364,16 +19504,18 @@ in with self; { RoughSetKnowledgeReduction = derive2 { name="RoughSetKnowledgeReduction"; version="0.1"; sha256="0zn6y2rp78vay9zwijpzhjpyq1gmcsa13m9fcsxkd1p2c8g5rbmf"; depends=[]; broken = true; }; Rphylip = derive2 { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; broken = true; }; Rpvt = derive2 { name="Rpvt"; version="0.1.1"; sha256="0ggd6ikp2s9z4086y8w3qzb9jcyyqpby41p3ayjwam94skh154mf"; depends=[Rcpp RcppArmadillo Rdpack]; broken = true; }; - RsSimulx = derive2 { name="RsSimulx"; version="2.0.0"; sha256="11ji1fvf6rclzh8yw1d7d4zkfzsyw4jsfwyhxlx9j0kqyr0jz5bc"; depends=[ggplot2 gridExtra]; broken = true; }; RtutoR = derive2 { name="RtutoR"; version="1.2"; sha256="19wmi30b5i6zj673d76gxl6j0k3ppfyl5fqrcs0dwmmadrrvbajq"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes officer plotly rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; broken = true; }; Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; broken = true; }; + Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; broken = true; }; Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1.1"; sha256="0kaxhaa65k1hkhl4kqfxyyk6v967xncrdr5hy8b808zlbqriankc"; depends=[]; broken = true; }; + RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-5"; sha256="01n74xnhz1fdvb63g0lxkzsdp1frspin4a764l358immjivdrx2v"; depends=[coda lattice MASS MCMCpack mvtnorm]; broken = true; }; RxODE = derive2 { name="RxODE"; version="1.1.5"; sha256="055g910dwn3v64mqqaidxhk4n6kwfyq3qpvp1grppzz50a0sz2zj"; depends=[assertthat backports BH checkmate cli dparser ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo RcppEigen rex sitmo StanHeaders sys]; broken = true; }; S2sls = derive2 { name="S2sls"; version="0.1"; sha256="0qq1rff2cdgrm5rj69jxgrl71i0wmzyn424fdvcg02zdv9ggqhd3"; depends=[spanel]; broken = true; }; SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; broken = true; }; SASPECT = derive2 { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; broken = true; }; SASxport = derive2 { name="SASxport"; version="1.7.0"; sha256="1na94lxrn8kbhxpiflg14nkdx13rjq9bvvqbxyxh1mq0q7vz7a2l"; depends=[Hmisc stringi]; broken = true; }; SAVE = derive2 { name="SAVE"; version="1.0"; sha256="1m9rrga8x00hlvn0c1jcz6yz14pdm6h3dq14905mq49sw63c7zll"; depends=[coda DiceKriging]; broken = true; }; + SBRect = derive2 { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; broken = true; }; SBSA = derive2 { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp RcppArmadillo]; broken = true; }; SCORER2 = derive2 { name="SCORER2"; version="0.99.0"; sha256="1a28wga69ip9s98ch2dqgl0qkwa3w6frmaqcvhclc360ik813mxq"; depends=[]; broken = true; }; SCPME = derive2 { name="SCPME"; version="1.0"; sha256="0yhsaaa349wbrswcvp7w8c52wzp7rs3528rs4wqa8b3r3fh983mh"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; broken = true; }; @@ -19415,20 +19557,27 @@ in with self; { SampleSizeMeans = derive2 { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; broken = true; }; SampleSizeProportions = derive2 { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; broken = true; }; ScoreGGUM = derive2 { name="ScoreGGUM"; version="1.0"; sha256="0f7sjfr3a8b8y1n9lrwyiyyljls3rbz84d9s93psi2fnmjj0kvgw"; depends=[]; broken = true; }; + SelvarMix = derive2 { name="SelvarMix"; version="1.2.1"; sha256="02d16ffw5syq0d3yiim9jgrjlz99n956zxp23idpsmq6lb2whq66"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; broken = true; }; ShinyImage = derive2 { name="ShinyImage"; version="0.1.0"; sha256="0nhsaq6i9lr8gqpdkahw3qr0c0cb0qwc0nqpk1ism21l6zg6ahc9"; depends=[EBImage R6 shiny shinyjs]; broken = true; }; SimEvolEnzCons = derive2 { name="SimEvolEnzCons"; version="2.0.0"; sha256="0h3j8lp1s3zqb9qgy16gd0rdlbr2g1jqrc4a19zhmix2kygs5012"; depends=[ade4 RColorBrewer rgl scatterplot3d]; broken = true; }; SimpleTable = derive2 { name="SimpleTable"; version="0.1-2"; sha256="1rkybrp7zlb7cj37799npss1ldic0yf519q5l7a6ikal4yl1afyb"; depends=[hdrcde locfit MCMCpack]; broken = true; }; Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; broken = true; }; SmithWilsonYieldCurve = derive2 { name="SmithWilsonYieldCurve"; version="1.0.1"; sha256="0qvhd1dn2wm9gzyp6k7iq057xqpkngkb4cfmvmjqmf0vhysp371w"; depends=[]; broken = true; }; + SoDA = derive2 { name="SoDA"; version="1.0-6.1"; sha256="0d3jb1dsg1q06c08ldmhj0q2sb1pc0g08rfal29ddng3b4qm1lhh"; depends=[]; broken = true; }; SocialNetworks = derive2 { name="SocialNetworks"; version="1.1"; sha256="0d868xka6d35i17r28cvm0ya971xk6y1kycsfff0279w27cjd9x0"; depends=[Rcpp]; broken = true; }; SoftRandomForest = derive2 { name="SoftRandomForest"; version="0.1.0"; sha256="1k439hcp53yg6f2x4bgafsri4jjgpva97dphzsdk5icfs5d38bh8"; depends=[boot]; broken = true; }; SolveRationalMatrixEquation = derive2 { name="SolveRationalMatrixEquation"; version="0.1.0"; sha256="1m0b4sb247k6mlagvs4nj42ga9p48g9736lmhar7v1c5qhi7pw3v"; depends=[]; broken = true; }; - SourceSet = derive2 { name="SourceSet"; version="0.1.3"; sha256="159kg4pna24yihkghxc2k5f56dqk8aypxcmj1whgnajmgab29ry1"; depends=[gRbase gtools igraph plyr progress reshape2 scales]; broken = true; }; + SpNetPrep = derive2 { name="SpNetPrep"; version="1.2"; sha256="1jhjyrb0k5z21vn9bc444rxax3lxsyzyhggrcy7zl9ps7p4ra990"; depends=[leaflet maptools prodlim raster rgdal shiny shinythemes sp spatstat spatstat_core spatstat_geom spatstat_linnet]; broken = true; }; + SpaDES = derive2 { name="SpaDES"; version="2.0.9"; sha256="11acb05b957qwbii701y1b4lvcnvmiixkrlmqkccc8n9icqq107n"; depends=[quickPlot reproducible SpaDES_core SpaDES_tools]; broken = true; }; + SpaDES_addins = derive2 { name="SpaDES.addins"; version="0.1.4"; sha256="0ly411y95rcm30slaj02vn7clmyq3dvinzg1x40vbsqzcjjg1h6l"; depends=[magrittr miniUI reproducible rstudioapi shiny SpaDES_core stringi]; broken = true; }; + SpaDES_core = derive2 { name="SpaDES.core"; version="1.1.0"; sha256="0rmdwyk4733skf3mgi879lcg5hjiv72mf96yby3a0x9v2lzlzbv7"; depends=[crayon data_table fastdigest igraph lobstr qs quickPlot raster reproducible Require whisker]; broken = true; }; + SpaDES_tools = derive2 { name="SpaDES.tools"; version="1.0.0"; sha256="1p1mj9gfgikqng5p9yj01ykxnrqvxcgd6ghi7amgqlkhv9mbjwhi"; depends=[backports checkmate CircStats data_table fastmatch fpCompare magrittr quickPlot raster Rcpp Require rgeos sp]; broken = true; }; SpaTimeClus = derive2 { name="SpaTimeClus"; version="1.0.1"; sha256="0w2jxaz2kxfksyss5vy6xy499p8jg8lpqlykwgm2srp1fd2l3rs9"; depends=[Rcpp RcppArmadillo]; broken = true; }; SpatialBall = derive2 { name="SpatialBall"; version="0.1.0"; sha256="09iy1smfqnb0rd2s9a1wqgscb1plwcwwph6a8215l4zrs6svszv2"; depends=[dplyr ggplot2 hexbin lubridate RColorBrewer]; broken = true; }; SpatialEpiApp = derive2 { name="SpatialEpiApp"; version="0.3"; sha256="0svnnzqshk08s58ishy8xhqch44mb5svgfphkvpgysdd68dgaysr"; depends=[dplyr dygraphs ggplot2 htmlwidgets knitr leaflet mapproj maptools RColorBrewer rgdal rgeos rmarkdown shiny shinyjs SpatialEpi spdep xts]; broken = true; }; SpatialFloor = derive2 { name="SpatialFloor"; version="1.1.0"; sha256="07mwgcvkkq478l6wxvrdjs9d578x0kgs5xy86lgy5my0xqfcv6y8"; depends=[blocksdesign fields reshape2 taRifx]; broken = true; }; SpiceFP = derive2 { name="SpiceFP"; version="0.1.1"; sha256="080640q212lf1jwcrab9dcj26gazmvvxhjg797s1s5pnmax57m6n"; depends=[doParallel foreach genlasso Matrix purrr stringr tidyr]; broken = true; }; + Spillover = derive2 { name="Spillover"; version="0.1.0.2"; sha256="0a9gvr2p4xdd47k8vfjyq952svfxvfvqzp6bkbsjj0mdjvjq3kaj"; depends=[dplyr fastSOM ggplot2 tidyr vars zoo]; broken = true; }; SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; broken = true; }; StVAR = derive2 { name="StVAR"; version="1.1"; sha256="0wz5f5i9927fs1s8yczwqs022k912220m28l1sv5f0r081iv656i"; depends=[ADGofTest matlab MCMCpack numDeriv]; broken = true; }; StandardizeText = derive2 { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; broken = true; }; @@ -19441,13 +19590,14 @@ in with self; { SunterSampling = derive2 { name="SunterSampling"; version="1.0.1"; sha256="0qfld3j8xlpgp7c58zqw6gzm38m4d740lvdj5vmcflfcc6ja98sf"; depends=[]; broken = true; }; SuperPCA = derive2 { name="SuperPCA"; version="0.4.0"; sha256="0bpcxg9rh3ig5fzml026glws13daf5hiqbvdy7hsriv8y8qlxnfk"; depends=[fBasics glmnet MASS matlab matlabr Matrix matrixStats pracma psych R_matlab RSpectra spls timeSeries]; broken = true; }; SurfaceReconstruction = derive2 { name="SurfaceReconstruction"; version="0.1.0"; sha256="0xgzr0hl6imgyq0ljyqipjkdjbyc0pz35z1k20b5gbz0b6rfz4c9"; depends=[BH Rcpp RcppCGAL RcppEigen rgl Rvcg]; broken = true; }; - SurvCorr = derive2 { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[fields survival]; broken = true; }; SurvGSD = derive2 { name="SurvGSD"; version="1.0.0"; sha256="0aa5zaf9akkqkxs8iqwnm93sfwakhhhs3qfafbk0vrwmb5yvzzm1"; depends=[flexsurv ldbounds mnormt]; broken = true; }; Survgini = derive2 { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; broken = true; }; SurviMChd = derive2 { name="SurviMChd"; version="0.1.1"; sha256="1sj3i950nmam3r70as85kdx6nd88iidb5jpiz2a5a39i5lb7mgf7"; depends=[dplyr ICBayes icenReg R2jags Rdpack readr rjags rlang survival tidyverse]; broken = true; }; + SurvivalPath = derive2 { name="SurvivalPath"; version="1.3.2"; sha256="17glrkz63ms76cmg7lfz0nay131ngwxigwfs0rzgfjna9gy06dgi"; depends=[dplyr ggplot2 ggtree Hmisc rms survival survivalROC survminer treeio]; broken = true; }; SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; broken = true; }; + SynthCast = derive2 { name="SynthCast"; version="0.2.1"; sha256="0gln7x1vlfdnr0qaqgagr93r484hv3dp65n24b3wl3p02msz9bgn"; depends=[dplyr forcats Synth tidyr]; broken = true; }; TBSSurvival = derive2 { name="TBSSurvival"; version="1.3"; sha256="1r87qvnlvc18i12yi25lfpdb8b5p33fywi38hs2xp1y2vbvz5s9b"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; broken = true; }; - TCIU = derive2 { name="TCIU"; version="1.2.0"; sha256="0cyagbvcb8x1bszwq8id75838n53l1kcdah7hhm679j2wm4i487s"; depends=[AnalyzeFMRI cubature doParallel dplyr DT extraDistr fancycut fmri foreach forecast geometry ggplot2 ggpubr gridExtra ICSNP MultiwayRegression plotly pracma RColorBrewer reshape2 rrcov scales spatstat_core spatstat_geom tidyr zoo]; broken = true; }; + TCIU = derive2 { name="TCIU"; version="1.2.1"; sha256="1jk62c5s1nqg3aah04f8i9s52d8hqw5s1ckxj52p5bgkx55q83kw"; depends=[cubature doParallel dplyr DT extraDistr fancycut fmri foreach forecast geometry ggplot2 ggpubr gridExtra ICSNP MultiwayRegression plotly pracma RColorBrewer reshape2 rrcov scales spatstat_core spatstat_geom tidyr zoo]; broken = true; }; TDAmapper = derive2 { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; broken = true; }; TDD = derive2 { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; broken = true; }; TDMR = derive2 { name="TDMR"; version="2.2"; sha256="19ljgj5iy41m7rrawzkxkln7acydssk8zm05k3sfb483s8zygwiq"; depends=[adabag SPOT testit twiddler]; broken = true; }; @@ -19475,10 +19625,14 @@ in with self; { TargomoR = derive2 { name="TargomoR"; version="0.2.0"; sha256="0dzlqv8v36cm5b9hc9am4351nigknq7vr0mki9kzk2979c18if6b"; depends=[geojsonsf httr jsonlite leaflet magrittr sf tibble xml2]; broken = true; }; TauP_R = derive2 { name="TauP.R"; version="1.5"; sha256="02vk9rj8yx4n2pihgk93bs2f9wkpkyfqm2kp7ixj4wpa29a0iq6v"; depends=[]; broken = true; }; Thinknum = derive2 { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95aprq0xm0dk720xk5zmiijxasg92sfp0va6n"; depends=[RCurl RJSONIO]; broken = true; }; + ThreeArmedTrials = derive2 { name="ThreeArmedTrials"; version="1.0-3"; sha256="06jhgl1fzvkvnhrjs4xcyw6yymwl499rw9xnfwpx44dzxi7nynxj"; depends=[MASS numDeriv]; broken = true; }; TickExec = derive2 { name="TickExec"; version="1.1"; sha256="0v0m0wi49yw0ply19vnirl2zwnk61sxalx24l8cadvkssgs13509"; depends=[]; broken = true; }; TiddlyWikiR = derive2 { name="TiddlyWikiR"; version="1.0.1"; sha256="0vwwjdmfc8c0y2gfa8gls1mzvp29y39c9sxryrgpk253jj9px1kr"; depends=[]; broken = true; }; + TileManager = derive2 { name="TileManager"; version="0.4.1"; sha256="0pcskdqxxm07j47bw1j4d3jqf64pk0jqwcp5379hnpi6kr7f5gvh"; depends=[APfun raster rgeos sp XML]; broken = true; }; TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; broken = true; }; TimeWarp = derive2 { name="TimeWarp"; version="1.0.15"; sha256="1v6f6d1h9dc8npdy0ph5hhc4jjkzh8kac48lz4ahgngi9n0xwql9"; depends=[]; broken = true; }; + ToxicR = derive2 { name="ToxicR"; version="22.8.1.0.3"; sha256="0sc7i3jzqhjwhcz83p7vgjmlpz4f27k0phbi2q5c8gxcnkzbffwp"; depends=[coda doBy dplyr forcats ggplot2 ggridges multcomp Rcpp RcppEigen RcppGSL scales shiny tidyverse]; broken = true; }; + TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.1"; sha256="03cr1cmiygi0kq37zs8dnp1rd670yzd4z1wgj31ahnld1siqb30g"; depends=[caret data_table DescriptiveStats_OBeu dplyr lubridate RCurl zoo]; broken = true; }; TreePar = derive2 { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; broken = true; }; Tsphere = derive2 { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; broken = true; }; TwoCop = derive2 { name="TwoCop"; version="1.0"; sha256="1ycxq8vbp68z82r2dfg2wkc9zk3bn33d94xay20g2p55lnzl2ifd"; depends=[]; broken = true; }; @@ -19530,6 +19684,7 @@ in with self; { agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; broken = true; }; akmeans = derive2 { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; broken = true; }; alignfigR = derive2 { name="alignfigR"; version="0.1.1"; sha256="0jsj0h7zpzj6ynfydl8qbggm03xx8db769rli7rcx9909xdxabk6"; depends=[ggplot2]; broken = true; }; + allhomes = derive2 { name="allhomes"; version="0.3.0"; sha256="1z39qd7hkl2xy0lhf8sgc4rjf4ihi3zbsadchc97h7p7cn9mjbpk"; depends=[dplyr htmltab httr jsonlite magrittr purrr readr rlang stringr tibble tidyr]; broken = true; }; amber = derive2 { name="amber"; version="1.0.3"; sha256="0kc7g5rb0wrs1id1k0qay56063gpffwvcll38983b1l3k215mxiv"; depends=[classInt doParallel foreach Hmisc latex2exp ncdf4 raster rgdal rgeos scico sp viridis xtable]; broken = true; }; ambiorix = derive2 { name="ambiorix"; version="2.1.0"; sha256="1831i5fv966cghp5xgq71wqzldlajyjj2p4nkhbw007w2dcn0y21"; depends=[assertthat cli fs glue httpuv jsonlite log promises websocket]; broken = true; }; aml = derive2 { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; broken = true; }; @@ -19540,6 +19695,7 @@ in with self; { andrews = derive2 { name="andrews"; version="1.0"; sha256="130i86qkdy1xpcf611jpzqgmd17iik7j7spdcfwzk48f31biyp8v"; depends=[]; broken = true; }; anominate = derive2 { name="anominate"; version="0.6"; sha256="01p2qkqf88bzhwywyass5r8dwg2ycflmkbzmsps7fzy0kv3xyb02"; depends=[coda MCMCpack pscl wnominate]; broken = true; }; aof = derive2 { name="aof"; version="0.1.2"; sha256="0552i5wvm04dq8a8y1x36sprc9cbx6k7c3bmsgqxm71dpsxajb0i"; depends=[bcpa]; broken = true; }; + aphylo = derive2 { name="aphylo"; version="0.2-1"; sha256="0kvxz5r1z63610k127ji7dangrq7pd0zfgf5yqsvn0v7j4c9c5v5"; depends=[ape coda fmcmc MASS Matrix Rcpp xml2]; broken = true; }; apricom = derive2 { name="apricom"; version="1.0.0"; sha256="1gyd1yln14cn0iswj7sjs4hav6j6d4f3ncps4gqbci5fwha5blcr"; depends=[logistf penalized rms shrink]; broken = true; }; apsrtable = derive2 { name="apsrtable"; version="0.8-8"; sha256="1qmm89npjgqij0bh6p393wywl837lfsshp2mv9b5izh1sg2qfwvw"; depends=[]; broken = true; }; aptg = derive2 { name="aptg"; version="0.1.1"; sha256="0mdhgc0jrl2za3k2awm92vky2ghcssqq1x2h57ns9b17lwdrsdl4"; depends=[ape brranching phytools taxize xml2]; broken = true; }; @@ -19560,6 +19716,7 @@ in with self; { automultinomial = derive2 { name="automultinomial"; version="2.0.0"; sha256="04rjg3xjlhnkchzvdxqm762z5abm81s5b9czgzmli30zh07bf3fd"; depends=[igraph Matrix numDeriv]; broken = true; }; b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; broken = true; }; bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; broken = true; }; + bRacatus = derive2 { name="bRacatus"; version="1.0.9"; sha256="0rwa452izd453nllirdvngcrf1inpc7njfhdlpwjvgsx9k3ri908"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; broken = true; }; babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; broken = true; }; badgecreatr = derive2 { name="badgecreatr"; version="0.2.0"; sha256="0mdixklaxky5gs8zm99ky280vxxlbq1mxnaarq6x0d1cb71bzv4l"; depends=[git2r]; broken = true; }; baggedcv = derive2 { name="baggedcv"; version="1.0"; sha256="1rqs4sm6g1anck5s2dxlm1vcmylpphcbs2dpvf1sjki5lrzdq9z4"; depends=[doParallel foreach kedd mclust]; broken = true; }; @@ -19596,7 +19753,6 @@ in with self; { bivquant = derive2 { name="bivquant"; version="0.1"; sha256="05dn4qik2dvmgqc2613vddh312bqhza1vnf94an75888gxri5h03"; depends=[copula cubature lpSolve MASS mvtnorm regpro]; broken = true; }; blaster = derive2 { name="blaster"; version="1.0.4"; sha256="0y2vdksmy1xngqvf7wxy5yf58830sm0bi82vn02yba1x6345ghjr"; depends=[Rcpp]; broken = true; }; blin = derive2 { name="blin"; version="0.0.1"; sha256="1h94azm7gli9i4v3li5c1p36p3rkcj2p5j6rqzlzf0pcqs0bsc09"; depends=[abind glmnet MASS Matrix mvtnorm]; broken = true; }; - blindrecalc = derive2 { name="blindrecalc"; version="0.1.3"; sha256="1kaia4mpwjh9p0m9jc694i2gy1hfqa3k04w17cnmwsfppgwq11ls"; depends=[Rcpp]; broken = true; }; blockRAR = derive2 { name="blockRAR"; version="1.0.2"; sha256="1d9izlcgz85kcz1sh11mcxq96qh0cwv6638jha851h2f4lnc8aa4"; depends=[arm dplyr ldbounds magrittr tibble]; broken = true; }; blockTools = derive2 { name="blockTools"; version="0.6-3"; sha256="0023p0msfmp8swq4f5aff40m976np7y051x8hjizzw91hrfa4w2n"; depends=[MASS tibble]; broken = true; }; blockcluster = derive2 { name="blockcluster"; version="4.5.1"; sha256="1f152m3fv0aaw2csgqvf1y231f5rjhwrkn69yyx9yb3ff65z49d8"; depends=[Rcpp rtkore]; broken = true; }; @@ -19605,6 +19761,7 @@ in with self; { bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; broken = true; }; bmk = derive2 { name="bmk"; version="1.0"; sha256="1wxkrlrhmsxsiraj8nyiax9bqs834ln2swykmpf40wxspkykgfdq"; depends=[coda functional plyr]; broken = true; }; bmmix = derive2 { name="bmmix"; version="0.1-2"; sha256="00php2pgpnm9n0mnamchi6a3dgaa97kdz2ynivrf38s0vca7fqx8"; depends=[ggplot2 reshape2]; broken = true; }; + bmotif = derive2 { name="bmotif"; version="2.0.2"; sha256="1zy153z7kasfivj0mvrkyn96s0sgdp34w4pdjpcvfnym3lr02f0m"; depends=[gtools Rcpp reshape2 tensor]; broken = true; }; bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; broken = true; }; bnpmr = derive2 { name="bnpmr"; version="1.2"; sha256="0vpqhs1h2mphn9w5yngb7lxvmzrhn7mkj7ca6hykhhg48s2ra98g"; depends=[]; broken = true; }; boomer = derive2 { name="boomer"; version="0.1.1"; sha256="16gwdvcp8bz5bgmvxsvc9iyz2a6mpwf5vgilc1lhf9l4n0l1m685"; depends=[crayon pryr rlang rstudioapi styler withr]; broken = true; }; @@ -19619,6 +19776,7 @@ in with self; { broomExtra = derive2 { name="broomExtra"; version="4.3.2"; sha256="02ijhqgymm8nv40fy4j6psqkhak3dfwz8i5k0ay3g7aic49lzcbf"; depends=[broom broom_mixed dplyr magrittr parameters performance rlang]; broken = true; }; bsem = derive2 { name="bsem"; version="1.0.0"; sha256="1h4wsib6ppqj8nbvj4pzkm04bzrdkg9l7xfmzzmld9cswai4iw52"; depends=[BH coda DiagrammeR lattice magrittr Rcpp RcppEigen rstan rstantools shiny StanHeaders viridis visNetwork]; broken = true; }; bvenn = derive2 { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; broken = true; }; + cRegulome = derive2 { name="cRegulome"; version="0.3.2"; sha256="0cvxad73l85zsgqmis5p24v71kkzi784b8v5z07f0dh9yp41p96q"; depends=[DBI ggplot2 ggridges httr igraph R_utils RSQLite UpSetR VennDiagram]; broken = true; }; cairoDevice = derive2 { name="cairoDevice"; version="2.28.2.1"; sha256="040gd6cyaabdi0lhfdba4isqjihj28hdxm7mc129nl863pxkx6qm"; depends=[]; broken = true; }; caliver = derive2 { name="caliver"; version="2.0.0"; sha256="04qa3zrk70c8ak70djfh23jyfxs8293s8wzkk6cs0nyrknhaxzzj"; depends=[ggplot2 lubridate ncdf4 raster rworldmap]; broken = true; }; capwire = derive2 { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; broken = true; }; @@ -19626,14 +19784,14 @@ in with self; { cartools = derive2 { name="cartools"; version="0.1.0"; sha256="0gc5502373f0c2m2rh6awvyfqrg1wx1f341dm2byk9znba887lgs"; depends=[animation devtools dplyr gapminder ggplot2 knitr rlist rmarkdown roxygen2 sde shiny tidyverse usethis]; broken = true; }; carx = derive2 { name="carx"; version="0.7.1"; sha256="1qyqsj6pfzzqyaj6076zvgcimhl4cll6sxfb6aigm02rwfkq5gvh"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; broken = true; }; cascadess = derive2 { name="cascadess"; version="0.1.0"; sha256="105m5w8rb8bkzmlc5nwb4g0wl8jgvz63jxq665x4jfq0z78qiwgd"; depends=[crayon htmltools magrittr rlang]; broken = true; }; - caschrono = derive2 { name="caschrono"; version="2.2"; sha256="0lbf7j6p5gzm4kk8sgzcmxwwzg59wp6g6l38m04609lpcsvxkd52"; depends=[Hmisc zoo]; broken = true; }; casen = derive2 { name="casen"; version="0.2.0"; sha256="05pn8raqlqdvqx61p2z4kv0ds0444dqzy9l3dacigiq88rz7s8nb"; depends=[dplyr glue haven labelled magrittr purrr rlang srvyr survey tidyr]; broken = true; }; cat_dt = derive2 { name="cat.dt"; version="0.3.1"; sha256="0qr3azaxs339kfiiyzasc46xz4rb37prdwvdmv0c40cvba6zvapf"; depends=[ggplot2 Matrix Rglpk]; broken = true; }; catSplit = derive2 { name="catSplit"; version="0.1.0"; sha256="0nifbwczfs5g9xxlmqfwvcaxd940k5xmbdmamwlhvgif7myi6xr4"; depends=[caret data_table dplyr farff OpenML rpart stringr]; broken = true; }; catchr = derive2 { name="catchr"; version="0.2.31"; sha256="0mj3cgv2d217hcmyr8x0i83wysxhixgly5y1fs6jb1x09gs1cwnd"; depends=[purrr rlang]; broken = true; }; + catenary = derive2 { name="catenary"; version="1.1.2"; sha256="1n64kq3lkaf00a2mghs67hnxvi4dp6g12pwifyx0bd418wkw9wf3"; depends=[boot broom dplyr ggplot2 tidyverse]; broken = true; }; + catnet = derive2 { name="catnet"; version="1.15.7"; sha256="015qh9k0jj5plp777j3kl20601qiwadkaqrdb0483h3gwqwy828g"; depends=[]; broken = true; }; catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; broken = true; }; causalCmprsk = derive2 { name="causalCmprsk"; version="1.0.3"; sha256="0s1jshh30jmkk2cx29dfhibmfzbpaqk7i0f8wayb204r73a58f8a"; depends=[data_table doParallel foreach inline purrr survival]; broken = true; }; - caviarpd = derive2 { name="caviarpd"; version="0.2.28"; sha256="08j739b0dmq6s8gjhzrjrhf5ni4fyygamjsyylrdq6cj6xkgb2m0"; depends=[]; broken = true; }; cbar = derive2 { name="cbar"; version="0.1.3"; sha256="1jy52qnpjvszdd8xviv3vr00ds6bah73q0mhd4kixf68jafnxd35"; depends=[Boom bsts dplyr ggplot2 magrittr]; broken = true; }; cbird = derive2 { name="cbird"; version="1.0"; sha256="0kzylylk46swd7f0j6kjyrcs3plbx9799q9kb8hjxmgh0qcjk2p6"; depends=[]; broken = true; }; cblasr = derive2 { name="cblasr"; version="1.0.0"; sha256="1bz8d4124qpja4bvzn6k1swi89cfyrcpwg2nwyj4r8y0m1hbpc71"; depends=[Rcpp]; broken = true; }; @@ -19643,18 +19801,24 @@ in with self; { cdb = derive2 { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; broken = true; }; cec2013 = derive2 { name="cec2013"; version="0.1-5"; sha256="07i2vp1x3qaw5di5vr5z70d47hh9174pjckjlhgv0f2w97slwc1i"; depends=[]; broken = true; }; cecs = derive2 { name="cecs"; version="0.2.4"; sha256="1fm1yrb8kd7f97kgsp5wfp02fspzvndki2aqsfcwb0rlrlckflzf"; depends=[cec2013 stringr]; broken = true; }; + ced = derive2 { name="ced"; version="1.0.1"; sha256="0xrf3y1cr4dylhh2xr1gggnwdwn7riz37g6yw55hyryg03hxkms6"; depends=[Rcpp]; broken = true; }; cenROC = derive2 { name="cenROC"; version="1.2.0"; sha256="07ja3yyqmb9cs76if32aksgcwki3y6nh13lvn9j0bdgbgqx65f3r"; depends=[condSURV icenReg Rcpp RcppEigen survival]; broken = true; }; censNID = derive2 { name="censNID"; version="0-0-1"; sha256="1ij5ci6nkqf0rq51vyh4jw5sr3y46yndfkjmwl78ppdj66axxir5"; depends=[]; broken = true; }; cernn = derive2 { name="cernn"; version="0.1"; sha256="0gz2x20pgsiq85hwkkpg4s1cdlw9plygx0446djc7qsymp469p2w"; depends=[]; broken = true; }; cgdsr = derive2 { name="cgdsr"; version="1.3.0"; sha256="07yc819hkabpzzh0g0cbqza6bcfy67b2marrzz1lj97f9iba78ja"; depends=[httr R_methodsS3 R_oo]; broken = true; }; + cgraph = derive2 { name="cgraph"; version="6.0.1"; sha256="0hmp07iz7ya3j8jaghm4pa0b84lsinc48rsibbh47sd3i6pkxfik"; depends=[]; broken = true; }; changedetection = derive2 { name="changedetection"; version="0.2.0"; sha256="0j8x7qyna7qgjhx56yxav1g3wj3r47zvx2hivybsjis2gqbl82hr"; depends=[glmnet L1pack Rdpack]; broken = true; }; changepoint_mv = derive2 { name="changepoint.mv"; version="1.0.2"; sha256="0bji0m4ks2lf9s1rnq58w97ywpgs3m9rpm5p5f70f0kn33yffrix"; depends=[assertive ggplot2 Rcpp Rdpack reshape2 tbart zoo]; broken = true; }; cheatR = derive2 { name="cheatR"; version="1.2.1"; sha256="0ph7bw2b3frmq6z7qb99pds8j81dbx0bxkbhb55mczqa7n0k50hy"; depends=[ngram purrr R_utils textreadr]; broken = true; }; cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; broken = true; }; chebpol = derive2 { name="chebpol"; version="2.1-2"; sha256="126cgqnl9jy332q0ywg9dr11d4q1aichwwakb1xcrxrqw2j26zzi"; depends=[geometry]; broken = true; }; + cheem = derive2 { name="cheem"; version="0.2.0"; sha256="0l8mbhl8jhwsikhy2nakdp21zz9k71fanhznjcqlpy7m7aqagp7i"; depends=[data_table DT ggplot2 magrittr plotly Rcpp shiny shinycssloaders shinythemes spinifex]; broken = true; }; + chessR = derive2 { name="chessR"; version="1.5.2"; sha256="1czv5y4ybbi15b87959vri25fy31yv2l2cdd5q6p9fw291kj1qnp"; depends=[curl dplyr httr jsonlite lubridate magrittr purrr rlang rvest stringr tidyr xml2]; broken = true; }; chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; broken = true; }; + chickn = derive2 { name="chickn"; version="1.2.3"; sha256="1d3xl2pigan6vb29nk2ks04dsl5vy16cv9z7miskmhcqcx2wm1qb"; depends=[bigstatsr doParallel doRNG foreach MASS mvnfast nloptr pracma Rcpp RcppArmadillo RcppParallel Rdpack rmio zipfR]; broken = true; }; childhoodmortality = derive2 { name="childhoodmortality"; version="0.3.0"; sha256="1ixd10jyzgr1ssnjas35kngpsqyjzl73wwpvcspv06cn12sv2b8d"; depends=[dplyr matrixStats plyr]; broken = true; }; chorrrds = derive2 { name="chorrrds"; version="0.1.9.5"; sha256="045m3hqfk63zlb44s07wflaawzn030fg0nqck4w852m52a0r1z5v"; depends=[dplyr forcats magrittr purrr rlang rvest stringr xml2]; broken = true; }; + chromatographR = derive2 { name="chromatographR"; version="0.4.4"; sha256="15m74ijyh7dw4g2yigw4nf0gwbx7qlqb05pd2kzxbjckyhd449nb"; depends=[chromConverter dynamicTreeCut fastcluster lattice minpack_lm ptw pvclust scales smoother]; broken = true; }; cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; broken = true; }; circglmbayes = derive2 { name="circglmbayes"; version="1.3.0"; sha256="0i5aacr7vqznm3rhlznc02xjzjkjliadxhhvsmf8wb2cvivz0wir"; depends=[BH coda ggplot2 Rcpp RcppArmadillo reshape2 shiny]; broken = true; }; citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; broken = true; }; @@ -19665,11 +19829,12 @@ in with self; { cleanr = derive2 { name="cleanr"; version="1.3.5"; sha256="0hi1ykg7z0mai5hs4vqri45llwnjnc5gfxrzfcv6yv2s4c2hwq2w"; depends=[checkmate fritools pkgload rprojroot]; broken = true; }; clere = derive2 { name="clere"; version="1.2.0"; sha256="0qc26ycycxphrbksk7jb1m6vh66a2zsnw8k4jnazs23sqdg24im9"; depends=[Rcpp RcppEigen]; broken = true; }; climate = derive2 { name="climate"; version="1.0.5"; sha256="17hfxav8j0zyyl1839sj7nysv08j5z7xwz3p42di16cyx57czm4w"; depends=[curl data_table httr XML]; broken = true; }; + climetrics = derive2 { name="climetrics"; version="1.0-5"; sha256="0jy6npilv21hm0cwv5dmxwbz1x5lw75a14n9nbp743864z6jrz30"; depends=[raster rts sp terra xts yaImpute zoo]; broken = true; }; clinUtiDNA = derive2 { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; broken = true; }; clpAPI = derive2 { name="clpAPI"; version="1.3.1"; sha256="0hjpdbmwaww5fznqkkg9jli5y8f8zyd7crn0imdb0xxypmnp7zgf"; depends=[]; broken = true; }; - clustAnalytics = derive2 { name="clustAnalytics"; version="0.5.0"; sha256="0c4cfxj5vb0l519b2llq9snzvqcilf48nlvm3zn2d7bpabwnfrs3"; depends=[boot dplyr fossil igraph kdtools mcclust mclust Rcpp Rdpack truncnorm]; broken = true; }; clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; broken = true; }; clustsig = derive2 { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; broken = true; }; + coala = derive2 { name="coala"; version="0.7.0"; sha256="00rwjdl3nscrl7ldb9j5l12xhjg1fi8li5l9xyx9gw28ixkznl6a"; depends=[assertthat digest R6 Rcpp RcppArmadillo rehh scrm]; broken = true; }; codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; broken = true; }; coexist = derive2 { name="coexist"; version="1.0"; sha256="15ydhrx996i6caa0360c2bgn2zvgwfg5wdhsqq1gvrggs15w7nml"; depends=[]; broken = true; }; collectArgs = derive2 { name="collectArgs"; version="0.4.0"; sha256="0fz5w1xsxiddzrwahrg50px4igyhd4plq655jaix6grancs7kvix"; depends=[magrittr]; broken = true; }; @@ -19680,11 +19845,13 @@ in with self; { compactr = derive2 { name="compactr"; version="0.1"; sha256="0f2yds6inmx0lixj08ibqyd2i61l2cbg1ckgpb8dl2q7kcyyd6mx"; depends=[]; broken = true; }; compareODM = derive2 { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; broken = true; }; compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; broken = true; }; + conText = derive2 { name="conText"; version="1.1.0"; sha256="04zqahx01rqpa6wm4krnr7vfafcxgqblrd911qw7pfwvmjl2w92s"; depends=[dplyr fastDummies ggplot2 Matrix quanteda reshape2 stringr text2vec tidyr]; broken = true; }; concurve = derive2 { name="concurve"; version="2.7.7"; sha256="185jwz7a33sc9gbkfbcxwzgzd39xn5x72d0nk6p045mq3xssk3j9"; depends=[bcaboot boot colorspace dplyr flextable ggplot2 knitr metafor officer pbmcapply ProfileLikelihood scales survival survminer tibble tidyr]; broken = true; }; + condSURV = derive2 { name="condSURV"; version="2.0.2"; sha256="1zw79rll44dx5vysfixfp684gf8c3c37xazwgrfzjbq54i3jwmir"; depends=[doParallel doRNG foreach KernSmooth np survival]; broken = true; }; conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; broken = true; }; connections = derive2 { name="connections"; version="0.1.1"; sha256="08fbyzyp26nh1a46p0zi3q0wzgl0cd9bjp4lhw2bwv1bv7yayamp"; depends=[DBI dbplyr dplyr pins rscontract uuid]; broken = true; }; constrainedKriging = derive2 { name="constrainedKriging"; version="0.2.4"; sha256="1a91s0b7yka37fb5pm172fmlqrhm6da370cqb9knvkg5n8vi4hys"; depends=[RandomFields rgeos sp spatialCovariance]; broken = true; }; - container = derive2 { name="container"; version="1.0.2"; sha256="0hrykh0q5f9j6ryikgr7zagavd8v62gvaiyglhrqxz18wqs30b3b"; depends=[data_table R6]; broken = true; }; + contact = derive2 { name="contact"; version="1.2.8"; sha256="1db3vgjlz0ivw3sx37mwy7ngjx0in3rxlm3i3akh4xzbfp9gjj87"; depends=[ape data_table doParallel foreach igraph lubridate raster rgdal rgeos sp]; broken = true; }; contextual = derive2 { name="contextual"; version="0.9.8.4"; sha256="0lww36nymg2cla83jdvl7a42cwn0il20apciz0ddplq8rw2i0a91"; depends=[data_table doParallel foreach Formula iterators itertools R_devices R6 rjson]; broken = true; }; conting = derive2 { name="conting"; version="1.7"; sha256="08f271j3gxcp4shda08kkv0v9ayaadvxgcglfsn6hjmw4hn298zg"; depends=[BMS coda gtools mvtnorm tseries]; broken = true; }; convergEU = derive2 { name="convergEU"; version="0.5.1"; sha256="1s42ki2shn3nd902gxbbmjch64iaq3iy3c592nq54w5jq5xd43f7"; depends=[broom caTools dplyr eurostat ggplot2 ggpubr purrr rlang rmarkdown stringr tibble tidyr]; broken = true; }; @@ -19702,6 +19869,7 @@ in with self; { cplexAPI = derive2 { name="cplexAPI"; version="1.4.0"; sha256="00h2zir1ffzjiglfyq8bsfmgq9z155jr0k0fxv8fsbfyw2x9dg10"; depends=[]; broken = true; }; cptec = derive2 { name="cptec"; version="0.1.1"; sha256="12y79r56zlm3d9z7886qc625x8c206vg3hmjxpvh3j2fapy287qc"; depends=[magrittr rvest xml2]; broken = true; }; crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; broken = true; }; + crimelinkage = derive2 { name="crimelinkage"; version="0.0.4"; sha256="1zzk50kyccvnp51vzp28c9yi23hsp25arrgdn88lwfwa0m43rlar"; depends=[geosphere igraph]; broken = true; }; crn = derive2 { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g136zld1i8cv859lf44fvx2d"; depends=[chron RCurl]; broken = true; }; crossReg = derive2 { name="crossReg"; version="1.0"; sha256="1866jhfnksv9rk89vw7w4gaxi76bxfjvqxx7cfa8nlrcsmaqd7rf"; depends=[]; broken = true; }; crossmatch = derive2 { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; broken = true; }; @@ -19711,6 +19879,7 @@ in with self; { csabounds = derive2 { name="csabounds"; version="1.0.0"; sha256="15l7i15w5jk4h3148dlk8v2i4awns5vxvv6m59qcv0hzns6jhx9j"; depends=[BMisc ggplot2 pbapply progress qte]; broken = true; }; csrplus = derive2 { name="csrplus"; version="1.03-0"; sha256="0kljndmiwblsvvdnxfywida9k0dmdwjq63d934l5yl6z7k4zd0xa"; depends=[sp]; broken = true; }; cstar = derive2 { name="cstar"; version="1.0"; sha256="1zws4cq5d37hqdxdk86g85p2wwihbqnkdsg48vx66sgffsf1fgxd"; depends=[]; broken = true; }; + cthist = derive2 { name="cthist"; version="1.2.1"; sha256="1v377i3d26m6arl04iqqvj2ghc0bhns8nrgvk677gkki34ndbcz5"; depends=[assertthat dplyr httr jsonlite magrittr polite RCurl readr rlang rvest selectr stringr tibble]; broken = true; }; cuml = derive2 { name="cuml"; version="0.2.1"; sha256="1dmk1gvvzkwfra63qslax9cgqjbsiqam5wcjl955wpb0wdqpa54k"; depends=[ellipsis hardhat magrittr parsnip Rcpp rlang]; broken = true; }; customsteps = derive2 { name="customsteps"; version="0.7.1.0"; sha256="1v6ks8j1mj623yai515xnrpx60hvilbrsn59r3zw30n68555cvw8"; depends=[dplyr generics magrittr purrr recipes rlang tibble tidyselect]; broken = true; }; cutoffR = derive2 { name="cutoffR"; version="1.0"; sha256="1801jylmpp4msyf07rhg4153kky1zvi4v0kkjb9d51dc7zkhh531"; depends=[ggplot2 reshape2]; broken = true; }; @@ -19721,6 +19890,7 @@ in with self; { cwm = derive2 { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; broken = true; }; cyphid = derive2 { name="cyphid"; version="1.1"; sha256="0ya9w8aw27n0mvvjvni4hxsr4xc8dd08pjxx7zkfl1ynfn5b08am"; depends=[fda]; broken = true; }; cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; broken = true; }; + daff = derive2 { name="daff"; version="0.3.5"; sha256="00zcdf215m7p3xm9yv571v09znhdqacxg69hb5b5j749mp4wdsyj"; depends=[jsonlite V8]; broken = true; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; broken = true; }; dash = derive2 { name="dash"; version="0.9.4"; sha256="1ggdfzlf7ayv2nc6qpmyrg3cx31cikhnv7smwpx6xlmj2sc75war"; depends=[assertthat base64enc brotli crayon digest fiery glue htmltools jsonlite magrittr mime plotly R6 reqres rlang routr]; broken = true; }; dashboard = derive2 { name="dashboard"; version="0.1.0"; sha256="1znqwvz49r47lp6q48qaas0s63wclgybav82a247qvcavzns3kip"; depends=[Rook]; broken = true; }; @@ -19730,9 +19900,9 @@ in with self; { datapackage_r = derive2 { name="datapackage.r"; version="1.3.5"; sha256="01xx8alj3niznkrn3y2w9j1g60zn1fq0a2clf4r5p2pjyr2rqgy3"; depends=[config future httr iterators jsonlite jsonvalidate purrr R_utils R6 readr rlist stringr tableschema_r urltools V8]; broken = true; }; dbEmpLikeGOF = derive2 { name="dbEmpLikeGOF"; version="1.2.4"; sha256="0vhpcxy702cp3lvlif2fzmvccys8iy7bv1fbg6ki2l8bvn2f7c5p"; depends=[]; broken = true; }; dbEmpLikeNorm = derive2 { name="dbEmpLikeNorm"; version="1.0.0"; sha256="0h5r2mqgallxf9hin64771qqn9ilgk1kpsjsdj2dqfl3m8zg967l"; depends=[dbEmpLikeGOF]; broken = true; }; + dblcens = derive2 { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; broken = true; }; dccvalidator = derive2 { name="dccvalidator"; version="0.3.0"; sha256="1l74pqvac0n7dyfzkz2m0m6j19c8icymbwcifp2g5qvrpznfhxjb"; depends=[config ggplot2 glue golem htmltools knitr markdown purrr reactable readr readxl reticulate rlang shiny shinyBS shinydashboard shinyjs skimr tibble visdat]; broken = true; }; dcminfo = derive2 { name="dcminfo"; version="0.1.7"; sha256="03r0ynzc5cck2rz20zbg5zx8v6s66ivizqav1pjkyvp6kxkmnf8q"; depends=[CDM]; broken = true; }; - dcortools = derive2 { name="dcortools"; version="0.1.2"; sha256="0p4qbah5jnb6jraka8bg6cks3namrz66bya2iz98q2adarqd517h"; depends=[ggplot2 Hmisc pheatmap Rcpp RcppArmadillo RcppEigen Rdpack Rfast]; broken = true; }; dcv = derive2 { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; broken = true; }; deGradInfer = derive2 { name="deGradInfer"; version="1.0.1"; sha256="0yczn63fhpirvz1g1kq9q0m04sisflxxgxy70c87jyvrw12nfwss"; depends=[deSolve gdata gptk]; broken = true; }; deamer = derive2 { name="deamer"; version="1.0"; sha256="1xbxr78n6s1yhf192ab4syi1naqlwl9z4cxzchrkw80q7bxqfiz8"; depends=[]; broken = true; }; @@ -19754,6 +19924,7 @@ in with self; { diffman = derive2 { name="diffman"; version="0.1.1"; sha256="08b4kqxfg8pmyl2xg8flb581s9wnkdcy5rrmrxp8a89y265qmirx"; depends=[data_table dplyr igraph Matrix progress Rcpp sf tidyverse]; broken = true; }; dils = derive2 { name="dils"; version="0.8.1"; sha256="1q6ba9j14hzf7xy895mzxc6n9yjgind55jf350iqscwzxf7ynp33"; depends=[igraph Rcpp]; broken = true; }; disastr_api = derive2 { name="disastr.api"; version="1.0.5"; sha256="1h5i6pwak16w0gdk8qjz4w9qpffjhzlsrvjkb4acrvgjgrsvz9kp"; depends=[httr jsonlite]; broken = true; }; + discgolf = derive2 { name="discgolf"; version="0.2.0"; sha256="07clh1awnibgrh7vl4a51r8dbya2rbmicm8v8x8mq8h8am2b3j0s"; depends=[crul jsonlite xml2]; broken = true; }; disco = derive2 { name="disco"; version="0.6"; sha256="1abvhf0yb4mw02j1krjb7q68jpwdnl2narcalf3vkjcbflcp76z3"; depends=[ggplot2 RColorBrewer tmod]; broken = true; }; discreteMTP = derive2 { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; broken = true; }; diseasemapping = derive2 { name="diseasemapping"; version="1.5.1"; sha256="0pqilkl56753j1fxy6mh7nx24n6qg2j5faxyxj6abcm6xrnkhmy9"; depends=[rgeos sp]; broken = true; }; @@ -19761,7 +19932,6 @@ in with self; { dissUtils = derive2 { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; broken = true; }; distr6 = derive2 { name="distr6"; version="1.6.9"; sha256="1vl8xg0r0g169xdx6prnfpfr1jnn8mc4daayrzpws4my2dc59dqh"; depends=[checkmate data_table ooplah param6 R6 Rcpp set6]; broken = true; }; distribglm = derive2 { name="distribglm"; version="0.4.1"; sha256="09gpkp7s8y2dcpjhqgi2nl6j8pmd500y89d8c8x8sxmh5mg8n5si"; depends=[readr]; broken = true; }; - dlm = derive2 { name="dlm"; version="1.1-5"; sha256="1aksm66sfa7ipl5xgs4j5giac7q2m744wjl40mva56xn6i674h4r"; depends=[]; broken = true; }; dmacs = derive2 { name="dmacs"; version="0.1.0"; sha256="1prw6h8sj6fcpajg6xwqhi8v5jfl74mbjdjrdy524miw56fh9h0r"; depends=[lavaan MplusAutomation]; broken = true; }; dmt = derive2 { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[MASS Matrix mvtnorm]; broken = true; }; dna = derive2 { name="dna"; version="2.1-2"; sha256="0l7i9640yd25cbxd3vbmlsqgk3pi2f7v6g5q0lrgycxl7jla9v1k"; depends=[]; broken = true; }; @@ -19776,7 +19946,9 @@ in with self; { dplyr_teradata = derive2 { name="dplyr.teradata"; version="0.4.1"; sha256="0ygn8cq4dnmzzxfskcir7g0bksgby5sw2j135gvrk599z3v6avg1"; depends=[bit64 DBI dbplyr dplyr odbc]; broken = true; }; drmdel = derive2 { name="drmdel"; version="1.3.2"; sha256="1772fxm3qs01h14qklp2rawcdm0vmjmb2mi62v1zl1hbxisnfq4s"; depends=[]; broken = true; }; dropR = derive2 { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; broken = true; }; + dsample = derive2 { name="dsample"; version="0.91.2.2"; sha256="18c0zxaqwgbn9kmkwlnicwd74ljy2sxj0b9ksif13pdlj3zn57h1"; depends=[MASS]; broken = true; }; dtree = derive2 { name="dtree"; version="0.4.2"; sha256="1cpv0pyf515610djxzfw1c83p3alk5a93clg4x9gk7a7qy4cyhr1"; depends=[caret evtree party partykit rpart]; broken = true; }; + dual_spls = derive2 { name="dual.spls"; version="0.1.2"; sha256="0cy3l715bf8l6yx5sdqmz9v5an3jr0zqhc99hzqv8iyzrdrd8hwd"; depends=[pdist]; broken = true; }; dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; broken = true; }; dupiR = derive2 { name="dupiR"; version="1.2"; sha256="0p649yw7iz6hnp7rqa2gk3dqkjbqx1f6fzpf1xh9088nbf3bhhz3"; depends=[plotrix]; broken = true; }; durmod = derive2 { name="durmod"; version="1.1-4"; sha256="0d721sbxjfh00gpxd4hj8iq04awfd0pcd6bw8cv7kny21l2f3w44"; depends=[data_table mvtnorm nloptr numDeriv Rcpp]; broken = true; }; @@ -19786,6 +19958,7 @@ in with self; { ebSNP = derive2 { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfvdgpiq8i7sqdp5assb8z1823w0b"; depends=[]; broken = true; }; ebmstate = derive2 { name="ebmstate"; version="0.1.3"; sha256="04pg9yqbjrq10ai13c8zm8sy7spnf96ldbbql7qysjl91ljgrqz6"; depends=[HDInterval mstate Rcpp survival]; broken = true; }; ecap = derive2 { name="ecap"; version="0.1.2"; sha256="0d260y4phh1a7zlj2lgvdf7xd2z14l9djv7nrwa84pwqqyijc7rl"; depends=[ggplot2 quadprog]; broken = true; }; + ecb = derive2 { name="ecb"; version="0.4.0"; sha256="0hn1d1hxilwxxmxzzpdcj81d4vy8fbjk1z09kw7j0b2p04wrdlkc"; depends=[curl httr rsdmx xml2]; broken = true; }; ecce = derive2 { name="ecce"; version="1.0.9"; sha256="071ahimmwc1bgcwli4c40h7drdg5ldhh0w1ldzxkjc78qyw8s23d"; depends=[purrr RCurl rjson stringr]; broken = true; }; edbuildr = derive2 { name="edbuildr"; version="0.3.0"; sha256="19fsk8qkxyzncn614fy6hmmxpv1dikqghs101hbzd0g0a511xk8f"; depends=[dplyr magrittr openxlsx scales stringr tidyselect]; broken = true; }; edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; broken = true; }; @@ -19802,7 +19975,6 @@ in with self; { eigenprcomp = derive2 { name="eigenprcomp"; version="1.0"; sha256="156qyv7sl8nng55n3ay6dnpayyfrqv27ndz40xf4w92is9zmymy0"; depends=[]; broken = true; }; elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; broken = true; }; elec_strat = derive2 { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; broken = true; }; - elections_dtree = derive2 { name="elections.dtree"; version="1.0.0"; sha256="02maspca7cw606fqly92gpxjzl6pzjmicmqin06g8xbfk1l6ryjn"; depends=[R6 Rcpp RcppThread Rdpack testthat]; broken = true; }; emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; broken = true; }; emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; broken = true; }; empiricalFDR_DESeq2 = derive2 { name="empiricalFDR.DESeq2"; version="1.0.3"; sha256="0h2mcdw4v3ac6dn0s4z37l4sdzbi12sxrnn0f0gc9z207dyyf6w3"; depends=[DESeq2 GenomicRanges]; broken = true; }; @@ -19822,6 +19994,8 @@ in with self; { erboost = derive2 { name="erboost"; version="1.3"; sha256="09hlpn6mqsmxfrrf7j3iy8ibb2lc4aw7rxy21g3pgqdmd9sbprim"; depends=[lattice]; broken = true; }; ergm_multi = derive2 { name="ergm.multi"; version="0.1.1"; sha256="17zlry93pwjc5pqdg1840i67j3vzm2j3bvss4chpmz66v9jk3faj"; depends=[ergm glue Matrix network purrr Rdpack rlang rle statnet_common tibble]; broken = true; }; ergm_userterms = derive2 { name="ergm.userterms"; version="3.10.0"; sha256="1aqrgdayh73dkr71gf8vawlj6qgv66pxr4klxgqb6ffan66b5p8g"; depends=[ergm network statnet_common]; broken = true; }; + ergmclust = derive2 { name="ergmclust"; version="1.0.0"; sha256="18vx02vr2wi0gw09g4hxb8glf38y06v4a0c6q666qv8bgcb0pgkw"; depends=[igraph lda MASS quadprog Rcpp RcppArmadillo viridis]; broken = true; }; + ergmito = derive2 { name="ergmito"; version="0.3-0"; sha256="0ajfx8g31p0lf0ajrgssb9lkhs1bxkz19z3q99l500znlivc2fy2"; depends=[ergm MASS network Rcpp RcppArmadillo texreg]; broken = true; }; erpR = derive2 { name="erpR"; version="0.2.0"; sha256="1y6abc5fkcyyjh36maj1zbxppqzwd5wkvzvqahyvzsz5fqpjkcdx"; depends=[rpanel]; broken = true; }; erratum = derive2 { name="erratum"; version="2.2.0"; sha256="0id03wm8knll548ydwv3cpn282xvw05vyaih8jy6nlmlis18wybf"; depends=[R6 rlang]; broken = true; }; errorizer = derive2 { name="errorizer"; version="0.2.1"; sha256="10p7ydm81x2gls0wn692llgj2rxhg4s96rv7gvihmgi5dflraypq"; depends=[]; broken = true; }; @@ -19830,12 +20004,14 @@ in with self; { evaluator = derive2 { name="evaluator"; version="0.4.3"; sha256="1gccymjb1ad3xw3kmqafchazv9rid6v6c3h8w96ai5b2jh8zlgwk"; depends=[cli crayon dplyr extrafont ggplot2 magrittr mc2d purrr readr readxl rlang rstudioapi scales stringi tibble tidyr vctrs viridis]; broken = true; }; evdbayes = derive2 { name="evdbayes"; version="1.1-1"; sha256="0lfjfkvswnw3mqcjsamxnl8hpvz08rba05xcg0r47h5vkgpw5lgd"; depends=[]; broken = true; }; eventstudies = derive2 { name="eventstudies"; version="1.2.2"; sha256="01vpd0gnxaibxn3nq6618rxlwapm86idz86n0wj5kfz4a9kj7lsx"; depends=[boot sandwich testthat xts zoo]; broken = true; }; + evolqg = derive2 { name="evolqg"; version="0.2-9"; sha256="1y1pq2hdilqkj6hk02km9aaaynz1calcw00r5k1rxlc4wfq1wx70"; depends=[ape coda expm ggplot2 igraph Matrix MCMCpack mvtnorm plyr Rcpp RcppArmadillo reshape2 vegan]; broken = true; }; evt0 = derive2 { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; broken = true; }; exactLoglinTest = derive2 { name="exactLoglinTest"; version="1.4.2"; sha256="0j146ih9szzks9r45vq1jf47hrwjq081q1nsja5h1gpllks8217h"; depends=[]; broken = true; }; exactmeta = derive2 { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; broken = true; }; excerptr = derive2 { name="excerptr"; version="2.0.1"; sha256="0lmcxlpxvldxwqxrprqq39hk5f770ii1x38jm2jbs4n75smp4m21"; depends=[checkmate reticulate]; broken = true; }; exdqlm = derive2 { name="exdqlm"; version="0.1.2"; sha256="0wkiihdvgf7lyzv02l10spxcn127w1jblz6fbr7yf16mfq0m9mlk"; depends=[brms coda crch dlm FNN GeneralizedHyperbolic HyperbolicDist LaplacesDemon magic tictoc truncnorm]; broken = true; }; exoplanets = derive2 { name="exoplanets"; version="0.2.2"; sha256="0jzqzw0sn2cixxl6wdikz6cmm2qijxcjp81c98dfqamjcnbpqc1f"; depends=[cli httr memoise readr tibble]; broken = true; }; + exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; broken = true; }; expands = derive2 { name="expands"; version="2.1.3"; sha256="00zb57gmpj86c7rvpqywpn4c5wl51immps935n3hd2fyk73vqljh"; depends=[ape commonsMath flexclust flexmix gplots matlab moments NbClust plyr RColorBrewer rJava]; broken = true; }; expert = derive2 { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; broken = true; }; expose = derive2 { name="expose"; version="0.0.3"; sha256="0dlxlxm3g9d8vmgp13i1825z1jzah94ih1vyif46s43xq0nf9anj"; depends=[e1071 foreach gam ggplot2 glmnet Matrix nnet polspline RColorBrewer Rcpp repmis SuperLearner xgboost]; broken = true; }; @@ -19854,6 +20030,7 @@ in with self; { fExoticOptions = derive2 { name="fExoticOptions"; version="3042.80"; sha256="1b3y7j5ywic6xhsj2afq6y5f5l0npgav854rb87938rjckz95d4h"; depends=[fBasics fOptions timeDate timeSeries]; broken = true; }; fExpressCertificates = derive2 { name="fExpressCertificates"; version="1.3"; sha256="0dcfwl0ib87p748hvwscm5ii9fhfarqfl3zqxa8kin2n0hrvkdb6"; depends=[fCertificates fExoticOptions fOptions Matrix mvtnorm tmvtnorm]; broken = true; }; fOptions = derive2 { name="fOptions"; version="3042.86"; sha256="1cqyggb1hb7z0gfgkziynz7nm85z0fn3bvz1iwpy49yy8ll7rfzr"; depends=[fBasics timeDate timeSeries]; broken = true; }; + fabisearch = derive2 { name="fabisearch"; version="0.0.4.4"; sha256="02xpndws34wh6kfk677kmpnhhxyxnwpg6asdfdn3wr44rcr7zk2v"; depends=[doParallel doRNG foreach NMF pkgmaker reshape2 rgl]; broken = true; }; facilitation = derive2 { name="facilitation"; version="0.5.2"; sha256="0gyqa3njyynvdhfziq33xqc7cjhszii67mk8809ncvh6abkdx1hw"; depends=[animation Matrix Rcpp]; broken = true; }; factorEx = derive2 { name="factorEx"; version="1.0.1"; sha256="03dgxxykxgq63cgan5gy5vz4hnwqmg48z2wdv8f69mk9452mg9m2"; depends=[arm doParallel estimatr foreach genlasso igraph mvtnorm pbapply pbmcapply prodlim sandwich stringr]; broken = true; }; factorMerger = derive2 { name="factorMerger"; version="0.4.0"; sha256="127k5h1gbbnjr6gxgck2n9glvvwkd69xq7n6gzmrq8gszk8v1x5m"; depends=[agricolae colorRamps dplyr forcats formula_tools ggplot2 ggpubr knitr magrittr MASS mvtnorm proxy reshape2 scales survival]; broken = true; }; @@ -19866,12 +20043,14 @@ in with self; { fam2r = derive2 { name="fam2r"; version="1.2"; sha256="0pq5cmzwk3s8cz5x8dsfb2d6qfpapkrwbzvkqmqkhcwhwryy40mm"; depends=[Familias paramlink]; broken = true; }; fasi = derive2 { name="fasi"; version="1.0.0"; sha256="1hfd6nl8zvn7sybji8s1pa2wl95l2vqa07rv96yn9rk07qvdc6dy"; depends=[fastAdaboost gam naivebayes]; broken = true; }; fastAdaboost = derive2 { name="fastAdaboost"; version="1.0.0"; sha256="1pv1y6znvc37pgwk99v4r0hljhipq8v6r3r5cb5vhgyl0bfi8g38"; depends=[Rcpp rpart]; broken = true; }; + fastCorrDiff = derive2 { name="fastCorrDiff"; version="0.5"; sha256="0fis04xfarvmhpdkh7524ffga8f8svpcn3837rqwy0g039dcfa64"; depends=[irlba Matrix plyr RSpectra]; broken = true; }; fastHICA = derive2 { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[energy fastICA]; broken = true; }; fasteraster = derive2 { name="fasteraster"; version="1.1.1"; sha256="1ycr2h046jds2758xvxn00rhglx3zarbzn3r38j66j5pnz2iiq4f"; depends=[Rcpp]; broken = true; }; fbRanks = derive2 { name="fbRanks"; version="2.0"; sha256="17kbmdpgqkj2n951c6mdsrgfga6kiij1gqiw1wpi0q3fq4dlfrzx"; depends=[igraph stringr]; broken = true; }; fcd = derive2 { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[combinat glmnet MASS]; broken = true; }; fdakma = derive2 { name="fdakma"; version="1.2.1"; sha256="0j9qgblrl7v4586dd6v0hjicli6jh8pkk5lzn8afpl75xfs24six"; depends=[]; broken = true; }; fdcov = derive2 { name="fdcov"; version="1.1.0"; sha256="0savsgcifcjjqrmbpn6m30gncq5iigqxpb19l710wlx8nm98svjh"; depends=[corrplot matlab]; broken = true; }; + fdistr = derive2 { name="fdistr"; version="0.1.0"; sha256="1i9nq4jmszbmwk4m6jfn7rifsn7aay40cj6kz23b9ihj3phqffi8"; depends=[dplyr ggplot2 magrittr usethis]; broken = true; }; fec16 = derive2 { name="fec16"; version="0.1.3"; sha256="0azvrg98li535mqa2awhmfisfyfr4d8dw0ynikxmp0z1w9l3dx1p"; depends=[dplyr readr vroom]; broken = true; }; feedeR = derive2 { name="feedeR"; version="0.0.10"; sha256="1p64c7ibwn6k5k3vsjxrcjr84czild7g8bqw0yv4axk52vk5jfkx"; depends=[digest dplyr lubridate readr stringr tibble xml2]; broken = true; }; fellov = derive2 { name="fellov"; version="0.1"; sha256="0z4b08ykajzwa5852dknqz5qqlmhklbwdq8x5zhyfmwba5zfbjav"; depends=[]; broken = true; }; @@ -19893,6 +20072,7 @@ in with self; { flow = derive2 { name="flow"; version="0.1.0"; sha256="1d5cj0qbmx6cwzik83vb0vijryq4b93y5wwgm8k92wg3lgknzdj6"; depends=[here htmlwidgets lifecycle nomnoml rstudioapi styler webshot]; broken = true; }; flower = derive2 { name="flower"; version="1.0"; sha256="1h2fvpjrvpbyrqb8hd51sslr1ibpwa7h9fiqy9anvf2yim5j11yq"; depends=[]; broken = true; }; flowfield = derive2 { name="flowfield"; version="1.0"; sha256="1cx3i0w3xq781mmms4x20fshlf1i9bwxw9bxx562crix3fq3m50j"; depends=[]; broken = true; }; + foieGras = derive2 { name="foieGras"; version="0.7-6"; sha256="0g4c9id7q3jgjcgwmncp4bkw9njwb41cp6ycv7psiidkhmnzi03d"; depends=[assertthat CircStats dplyr furrr future ggplot2 lifecycle lubridate mvtnorm patchwork purrr RcppEigen sf stringr tibble tidyr TMB tmvtnorm trip]; broken = true; }; fontHind = derive2 { name="fontHind"; version="0.1.1"; sha256="0qz3bj8vdy6jayy84p3vyxfwqll4v4qlklwq9wl981ii2k7g0vxf"; depends=[extrafont ggplot2 hrbrthemes]; broken = true; }; fontMPlus = derive2 { name="fontMPlus"; version="0.1.1"; sha256="1hvviawbfs3m7mr46y2sjdxkksi10vpbnjic11rjaxqcy9a43f4y"; depends=[extrafont ggplot2 hrbrthemes]; broken = true; }; foodweb = derive2 { name="foodweb"; version="1-0"; sha256="1zm2a87g9bkpz90j9lax28s5hq1w7ia28qqb6vnvr1d7a47g9zi9"; depends=[rgl]; broken = true; }; @@ -19914,6 +20094,9 @@ in with self; { fulltext = derive2 { name="fulltext"; version="2.0"; sha256="104wkas9azyb2drfaz1hrgbx2ilbb0k2mb8411l10rsbkqva099f"; depends=[aRxiv crul data_table digest fauxpas hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; broken = true; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; broken = true; }; fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; broken = true; }; + fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.12"; sha256="08rcyqh0nwpjjybks05klpb3ghry5n2652y5vxz7f5wdvlzjkhwz"; depends=[collapse dqrng dreamerr Formula generics gtools JuliaConnectoR MASS Matrix Rcpp RcppArmadillo RcppEigen summclust]; broken = true; }; + g2f = derive2 { name="g2f"; version="0.2"; sha256="1jsmiv6v8ilpxg1k1npcgqa467hpyw7mzh5m8dp7bxar4j5npsp4"; depends=[KEGGREST minval sybil]; broken = true; }; + gMWT = derive2 { name="gMWT"; version="1.2"; sha256="0gy8mm6ajbd2nl059nrb24wkh06qbbbg2h8m6fl58n5wgsjns1va"; depends=[clinfun Rcpp RcppArmadillo]; broken = true; }; gPdtest = derive2 { name="gPdtest"; version="0.4"; sha256="00dlhnklfg2yp4hp7yjgr2nfswv22c007xq1mxdbkll62zgd94mq"; depends=[]; broken = true; }; gRapfa = derive2 { name="gRapfa"; version="1.0"; sha256="07yzwzna9pdyzndxk6wwyl6v3gkfc7dvy1ixmdl3d38mcl1ahwyq"; depends=[igraph]; broken = true; }; gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; broken = true; }; @@ -19931,9 +20114,12 @@ in with self; { geneListPie = derive2 { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; broken = true; }; geneNetBP = derive2 { name="geneNetBP"; version="2.0.1"; sha256="0sp1chyln5k2zsq7cdhvrqxwr2nhrll1pdl1l5g6fd4gjl2m1nwk"; depends=[bnlearn ggm gRain graph igraph Rgraphviz scales]; broken = true; }; geneSignatureFinder = derive2 { name="geneSignatureFinder"; version="2014.02.17"; sha256="1s9jj87wnzzgm9hnws09yhrxdlb6jw56i3ddwznvmh8vpzrspv4h"; depends=[class cluster survival]; broken = true; }; + genius = derive2 { name="genius"; version="2.2.3"; sha256="03j6yry39nn8bccrnwjx1y36rdw167gjlkzl56g5lqwbrgx26bqy"; depends=[dplyr magrittr purrr reshape2 rlang rvest stringr tibble tidyr tidytext]; broken = true; }; genotypeR = derive2 { name="genotypeR"; version="0.0.1.8"; sha256="1kwzjn6hrnfizs44cz4a8qa4mdhdzqssc4axx0s6vngmkmsrffig"; depends=[colorspace doBy plyr reshape2 zoo]; broken = true; }; geoGAM = derive2 { name="geoGAM"; version="0.1-2"; sha256="0q09pk2npn4hjymklwfrhz2ybmjpcb6kvqkpn9l3a6cdjgk6bkmj"; depends=[grpreg MASS mboost mgcv]; broken = true; }; geomedb = derive2 { name="geomedb"; version="2.0.1"; sha256="1l35c9x1mhqd7z5ragd7w3ay8v2fdnbmbfx9grwi622j8yz1fbmq"; depends=[ape httr jsonlite]; broken = true; }; + geometr = derive2 { name="geometr"; version="0.2.10"; sha256="00yhw6k9wj3q0mmhwrjvhybsz5fcx86ms5n1q2l492jljplp46cr"; depends=[checkmate crayon deldir dplyr purrr raster Rcpp rgdal rlang sf sp tibble]; broken = true; }; + geonet = derive2 { name="geonet"; version="0.7.3"; sha256="0kp0a1bd8yyvp8w044arawyfmxwmqln3dqk0jzvz1vhbhldgy27s"; depends=[dplyr ggplot2 igraph Matrix mgcv spatstat_core spatstat_geom spatstat_linnet]; broken = true; }; georob = derive2 { name="georob"; version="0.3-14"; sha256="1an5mxq49kv038dplm9h6ngvsz71lkvjm34i7jjsdpaz3cyflp7v"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; broken = true; }; geostatsp = derive2 { name="geostatsp"; version="1.8.6"; sha256="1ciyw84y5zbwsfqvl5dhq8swfpkqcmzhhvdm9hr5rhj3497sls9j"; depends=[abind Matrix numDeriv raster sp]; broken = true; }; geotech = derive2 { name="geotech"; version="1.0"; sha256="18s7w6h1svc4n1hcgj5njfkf3nflkc53cdwsq5112p3442rlz33f"; depends=[]; broken = true; }; @@ -19941,15 +20127,16 @@ in with self; { gerbil = derive2 { name="gerbil"; version="0.1.5"; sha256="1rvf7z7zj04p2faj41fxxjs20bd3ghr6fbzkkapcx48fr4j9skj2"; depends=[DescTools lattice MASS mvtnorm openxlsx pbapply truncnorm]; broken = true; }; gesca = derive2 { name="gesca"; version="1.0.4"; sha256="1ndn8wgp22pr017x6v7jw8jy4gd06x8110qa860hw8i6pn47wfwv"; depends=[]; broken = true; }; getMet = derive2 { name="getMet"; version="0.3.2"; sha256="0j1h1vy8rd7czpnb4msdb9k560pnh7kjkmpqqwzwin2ms1c0mggb"; depends=[EcoHydRology jsonlite]; broken = true; }; + getpublist = derive2 { name="getpublist"; version="0.1.0"; sha256="0p6l7qha6i7vhqvav74yxpa6qph35g41v00173mjjqsvyhd0qc5i"; depends=[dplyr magrittr rvest stringr tibble tidyr xml2]; broken = true; }; gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; broken = true; }; - ggChernoff = derive2 { name="ggChernoff"; version="0.2.0"; sha256="09bh9isvx3hwwvg72fv6z3fvp8dimpbhvbp328z8amq8jjhph4vf"; depends=[ggplot2 scales]; broken = true; }; ggROC = derive2 { name="ggROC"; version="1.0"; sha256="0p9gdy7ia59d5m84z9flz5b03ri7nbigb3fav2v2wrml300d24vn"; depends=[ggplot2]; broken = true; }; - ggalignment = derive2 { name="ggalignment"; version="1.0.0"; sha256="07f1l7pav36i2z75bvwcwkamw5i36fh5klh5djglxnq1a3v8jm79"; depends=[dplyr ggimage ggplot2 magrittr rlang]; broken = true; }; ggbraid = derive2 { name="ggbraid"; version="0.2.2"; sha256="1y5yskhc63cprvdk1j7nhz8mz9i36qs8sqlr9h09yi172mp6ignn"; depends=[ggplot2]; broken = true; }; + ggconf = derive2 { name="ggconf"; version="0.1.3"; sha256="0g4xasqhdiqfqahakv6p5npl56f2iakx4bnc9v9zcjr077kdda4n"; depends=[ggplot2 rly]; broken = true; }; ggfacto = derive2 { name="ggfacto"; version="0.2.2"; sha256="0rxqkhmnzpljcdbg5wzmyq5fivd3d2h1903w8d1cblq7xw969xi0"; depends=[dplyr FactoMineR forcats ggiraph ggplot2 ggrepel gridExtra htmlwidgets kableExtra magrittr purrr rlang stringi stringr tabxplor tibble tidyr tidyselect vctrs widgetframe]; broken = true; }; ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; broken = true; }; gglogo = derive2 { name="gglogo"; version="0.1.5"; sha256="08wg0svcksdzchp6bdllmsnklxia3d0ygqwzgmqb2sga8nbkf5hl"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2 rlang tidyr]; broken = true; }; ggloop = derive2 { name="ggloop"; version="0.1.0"; sha256="0jpbgb16jfsv557zvishln98y7nd6p1ryp6hxkrkmhp9p35vzvc0"; depends=[assertthat ggplot2 lazyeval magrittr plyr]; broken = true; }; + ggpacman = derive2 { name="ggpacman"; version="0.1.0"; sha256="1040d6aciyllrpszh7l7y55fw4dx8cya2yvj0x4i2fibvygz83p6"; depends=[dplyr gganimate ggforce ggplot2 magrittr purrr rlang tidyr]; broken = true; }; ghee = derive2 { name="ghee"; version="0.1.0"; sha256="0b3czx2ibi5p8xl7i36zxnab032vrkh5bv204r7wgg1xpx8pdlra"; depends=[gh jsonlite]; broken = true; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; broken = true; }; glacierSMBM = derive2 { name="glacierSMBM"; version="0.1"; sha256="0117fzz2b1lccs0kkwz59w2yysi72j54yvz7373pz11w7rjds84f"; depends=[raster sp udunits2]; broken = true; }; @@ -19958,6 +20145,7 @@ in with self; { globalGSA = derive2 { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; broken = true; }; glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; broken = true; }; goldi = derive2 { name="goldi"; version="1.0.1"; sha256="191ac02bwrxr3khq6qirhxzfhv7pqfhqyg7jb473p5vwygpvc53l"; depends=[dplyr futile_logger magrittr Rcpp RcppArmadillo SnowballC tm]; broken = true; }; + gompertztrunc = derive2 { name="gompertztrunc"; version="0.1.0"; sha256="1qcx4s4lz2gsjr0nmwaih7pdh2anibrri7zfpsrl65lndkwy6hg4"; depends=[broom cowplot data_table dplyr flexsurv ggplot2 ggsci magrittr modelr rlang stringr tibble tidyr]; broken = true; }; googlesheets = derive2 { name="googlesheets"; version="0.3.0"; sha256="11q07nxys72wkxx9mawmjyf20gvwvrb7h3gpa73h6lgh2vgrwnv8"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tibble tidyr xml2]; broken = true; }; gps = derive2 { name="gps"; version="1.0"; sha256="1yzmv0zpgnis3v2f7m9j02zxw31kgcw9fny3vrvk4637jzz2ij56"; depends=[Matrix]; broken = true; }; gptk = derive2 { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; broken = true; }; @@ -19972,7 +20160,6 @@ in with self; { gsrsb = derive2 { name="gsrsb"; version="1.1.1"; sha256="0yjxzc69ihsx5ni6jb4shsvl9vskqlls3gmpckmzx5nsh1l5s5vb"; depends=[ldbounds mvtnorm xtable]; broken = true; }; gtcorr = derive2 { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; broken = true; }; guf = derive2 { name="guf"; version="1.0.2"; sha256="1dfmja2da211pcid4hr7x9q0sgz37756rpykm1ax862avdl8hsmc"; depends=[]; broken = true; }; - guiplot = derive2 { name="guiplot"; version="0.2.1"; sha256="0jn5020f6s3zg7w79d5sjaqld2i6b882q2r0ybdsyny47jd8h7rn"; depends=[DT excelR ggplot2 magrittr R6 rlang shiny svglite]; broken = true; }; gutenbergr = derive2 { name="gutenbergr"; version="0.2.1"; sha256="0rsk583x4i1ac6rbxr5f5cmczr4525bkv20jw7777n8fwn91zvyr"; depends=[dplyr lazyeval purrr readr stringr urltools]; broken = true; }; gvcm_cat = derive2 { name="gvcm.cat"; version="1.9"; sha256="1kwfcmnl1ivv1lh3zxccwls2xfyx3l8v71ngc0bg6441i81d4xp5"; depends=[MASS Matrix mgcv]; broken = true; }; gwdegree = derive2 { name="gwdegree"; version="0.1.1"; sha256="0p06hjp7vay83kbpqsgfr1d8z3ayv483rxbv86fdka94gvi1sjyc"; depends=[dplyr ergm ggplot2 gtools magrittr network scales shiny shinydashboard sna tidyr]; broken = true; }; @@ -19986,17 +20173,21 @@ in with self; { hcp = derive2 { name="hcp"; version="0.1"; sha256="0hhcy70g13kclxv733kgiys7qn5bi28abpkli5n2vj0a58ac333m"; depends=[]; broken = true; }; hddtools = derive2 { name="hddtools"; version="0.9.4"; sha256="011yhs8c6riimz63pa2am56n5aip2yk5gryx2amvk29pzp1v6my9"; depends=[curl raster readxl rgdal sp tidyr XML zoo]; broken = true; }; hdlm = derive2 { name="hdlm"; version="1.3.1"; sha256="1zl6bksw0apkmn5shf8qjpxjyx6vb40dc4m4db76hhn5nhcp10ic"; depends=[foreach glmnet iterators MASS Matrix]; broken = true; }; + healthcareai = derive2 { name="healthcareai"; version="2.5.1"; sha256="0ah855wvb2v8b8zz5a64q8psjrkpgq9xzyrla3mdpm5xx2gh0z0p"; depends=[caret cowplot data_table dplyr e1071 generics ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang ROCR stringr tibble tidyr xgboost]; broken = true; }; healthforum = derive2 { name="healthforum"; version="0.1.0"; sha256="13ih00amv9hrpngm6pxc8vzqzhx8c0yqgaprxdcp5li90lg5r3av"; depends=[magrittr purrr rvest stringr tokenizers xml2]; broken = true; }; heavy = derive2 { name="heavy"; version="0.38.196"; sha256="05k788ynw9fhhmjydzp8dbk1vhl44j2rz2shqwn02i40jmwdvwrk"; depends=[]; broken = true; }; hhcartr = derive2 { name="hhcartr"; version="1.0.0"; sha256="104xy3ihpi031pyzifnpc0jfq68gsbc12gzv6hp1vjrgy0nqw5l1"; depends=[bookdown captioner checkmate DiagrammeR DiagrammeRsvg ggplot2 hash Matrix rsvg]; broken = true; }; + hht = derive2 { name="hht"; version="2.1.5"; sha256="06znfxl5qh3wz1bn5qzl45nqgy94y6h0rcl2wzg94czv5d1a9ym0"; depends=[EMD fields spatstat_core spatstat_geom]; broken = true; }; hiPOD = derive2 { name="hiPOD"; version="1.0"; sha256="1i15ickz2s0kffh99qq30pl5hsl0lbj0kp55jnbv4x72hndzhmla"; depends=[rgl]; broken = true; }; hierband = derive2 { name="hierband"; version="1.0"; sha256="0d95hrgkd8b5sww3wsgs6v9zg9pm71ick8x8kj8d6vyib350h6yn"; depends=[]; broken = true; }; hierbase = derive2 { name="hierbase"; version="0.1.2"; sha256="1rsyjlwa8x5n83ymwv7qm373k3y7jfp64g717xd1jmn9vrmm052b"; depends=[glmnet hdi SIHR]; broken = true; }; hiertest = derive2 { name="hiertest"; version="1.1"; sha256="17maf1w4vkqknxff3f00fzv136j3dbbigyzl4vq4sln9j27w10r3"; depends=[]; broken = true; }; highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; broken = true; }; hillmakeR = derive2 { name="hillmakeR"; version="0.2"; sha256="1baynibgn4xqmpsxna8irggxvdc484mq5nza00rwg58vh1bc7wzq"; depends=[]; broken = true; }; + hkevp = derive2 { name="hkevp"; version="1.1.4"; sha256="01m5yywi4vjnwhdayaqaqcp5lz70mllj5ifnwdb4c60wm9aby9pm"; depends=[Rcpp RcppArmadillo]; broken = true; }; hmgm = derive2 { name="hmgm"; version="1.0.3"; sha256="12gaz2pi9ny7y772yzrfvl02p3n89cq1l5dzmcksd172gv9ayyz1"; depends=[binaryLogic glmnet MASS Matrix nat Rcpp rgl]; broken = true; }; hmi = derive2 { name="hmi"; version="1.0.0"; sha256="0fjcw13mkxza6nkq3fhp188ga1sjspq1sc6wjm4hy13xh7vdjpqq"; depends=[boot broom_mixed coda linLIR lme4 MASS Matrix MCMCglmm mice msm mvtnorm nlme nnet ordinal pbivnorm rlang tmvtnorm]; broken = true; }; + hmlasso = derive2 { name="hmlasso"; version="0.0.1"; sha256="0ydcyz9pw30ji8ghrvkgcbmp27d661vajl97b8cwis52605a3gfx"; depends=[BH MASS Matrix Rcpp RSpectra]; broken = true; }; hmma = derive2 { name="hmma"; version="1.1.0"; sha256="1qsvczqq44h46z0nfblv4rarbg64imz8m0jhxdhva27kbzdvqf97"; depends=[bnlearn graph MCMCpack mhsmm Rgraphviz]; broken = true; }; hockeyR = derive2 { name="hockeyR"; version="1.3.0"; sha256="0nb42c1fbmpmpmc9yjcdrypl5jvlqc2ibrzlvz7n51zwvx4v5gc0"; depends=[dplyr glue httr janitor jsonlite lubridate magrittr padr purrr rvest stringr tidyr tidyselect xgboost zoo]; broken = true; }; homtest = derive2 { name="homtest"; version="1.0-5"; sha256="1lnqlg3dwq174ic6dbjllysw5fjy5kvvgbl6gvabjmcs66z27fp0"; depends=[]; broken = true; }; @@ -20005,6 +20196,7 @@ in with self; { hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; broken = true; }; hsm = derive2 { name="hsm"; version="0.2.0"; sha256="066shjikqrrkxpnra4zknax1a0sk5nx9ms1br58vwqqvqq479rym"; depends=[]; broken = true; }; hsmm = derive2 { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; broken = true; }; + htmltab = derive2 { name="htmltab"; version="0.8.2"; sha256="09hnf339f3hzll7a0shq615h9d6f6xqrcv0c9iid6575m5qsallf"; depends=[httr XML]; broken = true; }; htmltidy = derive2 { name="htmltidy"; version="0.5.0"; sha256="1djkjff3750fm1sp54kf9cjvsqz2x7ia1ns12h5vqqcvwzfd0701"; depends=[htmltools htmlwidgets Rcpp XML xml2]; broken = true; }; hydroApps = derive2 { name="hydroApps"; version="0.1-1"; sha256="1ycv7l2ywwnx2mgklg6rry7n24jyhi4spvp1xl345yvyn9kf15dz"; depends=[nsRFA]; broken = true; }; hydroscoper = derive2 { name="hydroscoper"; version="1.4.1"; sha256="0jhvjmhcprjdjg6a54ic2f4kxfanpgwzzrkyyiggmj5jjg9yfhfw"; depends=[jsonlite pingr readr stringi stringr tibble]; broken = true; }; @@ -20018,10 +20210,12 @@ in with self; { iRF = derive2 { name="iRF"; version="2.0.0"; sha256="1ll4lxg743p2zipxcq13yjsc7j7dk766dcyixwxilllbisg0dh8y"; depends=[AUC data_table doParallel dplyr foreach Matrix RColorBrewer Rcpp]; broken = true; }; ibeemd = derive2 { name="ibeemd"; version="1.0.1"; sha256="115z13q02gzixziknix2l53mi12zzg30ra9h35pv6qzrr11ra1ic"; depends=[deldir fields rgeos sp spdep]; broken = true; }; ic50 = derive2 { name="ic50"; version="1.4.2"; sha256="1a5ddmbdfr3ls132fvalbkh4yaawv9k58rgpy54s5qddrm6aas2s"; depends=[]; broken = true; }; + icapca = derive2 { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; broken = true; }; idbg = derive2 { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; broken = true; }; identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; broken = true; }; ideq = derive2 { name="ideq"; version="0.1.4"; sha256="06xk9ghvh3fb79lbkmbqsk07xj06qaigiw41rzbi3bji3fjq1prw"; depends=[matrixcalc mvtnorm pdist Rcpp RcppArmadillo rgen]; broken = true; }; ifa = derive2 { name="ifa"; version="7.0"; sha256="1cxafd7iwvyidzy27lyk1b9m27vk785ipj9ydkyx9z1v0zna2wnl"; depends=[mvtnorm]; broken = true; }; + iilasso = derive2 { name="iilasso"; version="0.0.2"; sha256="043m1n5840459zsknkb54801apb0a2cqfprncmj2wp235rbqj832"; depends=[BH Matrix Rcpp]; broken = true; }; ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; broken = true; }; imfr = derive2 { name="imfr"; version="0.1.9.1"; sha256="1l1lvzvz9hsqwk60k2w8ry8mvgzj7wrd6ycfhgwv39xid9vk70g7"; depends=[dplyr httr jsonlite]; broken = true; }; imputeMDR = derive2 { name="imputeMDR"; version="1.1.2"; sha256="0ds5a4wav9vb9z5nji8hv5l76310rd970xf702fd0ckx1sh6rgd7"; depends=[]; broken = true; }; @@ -20033,10 +20227,12 @@ in with self; { infra = derive2 { name="infra"; version="0.1.2"; sha256="0jycnnmrrjq37lv67xbvh6p63d6l4vbgf3i1z9y7r75d6asspzn1"; depends=[]; broken = true; }; infutil = derive2 { name="infutil"; version="1.0"; sha256="02d0hfbkdqjj0lm1fzwwxy60831kbcjn2m4rfblpib0krkbpz72n"; depends=[ltm]; broken = true; }; inldata = derive2 { name="inldata"; version="1.0.3"; sha256="0iz3dlmaw6p81lj406nq4sg4qvl289mn95by10r3zrikf39l0jq2"; depends=[raster sp]; broken = true; }; + inlmisc = derive2 { name="inlmisc"; version="0.5.5"; sha256="0d7yqbd7bqsk312g28pqgdpcpqd06abyra2inmnj8fkgpmv3wjf6"; depends=[checkmate data_table GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos rmarkdown scales sp tinytex webshot wordcloud2 xtable yaml]; broken = true; }; insiderTrades = derive2 { name="insiderTrades"; version="0.0.1"; sha256="1hz2jmghfihbn1dbrr38zlwa0s44gm84pjhhk0yfrnljg9mqf4qy"; depends=[magrittr RCurl stringr]; broken = true; }; intdag = derive2 { name="intdag"; version="1.0.1"; sha256="0mb0a1ccc67clfa75b4hl901zdmx7fxw713c4ybx3i5wc2ldl8ph"; depends=[]; broken = true; }; interacCircos = derive2 { name="interacCircos"; version="1.0.0"; sha256="1waj0saavvaw2qzhbwcj1k0a2dnmq7zbkdnmb93xj6j1lhfjhbdy"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; broken = true; }; interferenceCI = derive2 { name="interferenceCI"; version="1.1"; sha256="19ky10nn6ygma6yy5h1krxx61aikh3yx5y39p68a944mz8f72vsn"; depends=[gtools]; broken = true; }; + interpret = derive2 { name="interpret"; version="0.1.26"; sha256="0f7bhz5gj0f5dxjcc9xlrx4y474akn6q0d7z71yypyw6bawvqkbn"; depends=[]; broken = true; }; interventionalDBN = derive2 { name="interventionalDBN"; version="1.2.2"; sha256="0wpp4bfi22ncvl0vdivniwwvcqgnpifpgxb4g5jbyvr0z735cd9w"; depends=[]; broken = true; }; introgress = derive2 { name="introgress"; version="1.2.3"; sha256="1j527gf7pmfy5365p2j2jbxq0fb0xh2992hj4d7dxapn4psgmvsk"; depends=[genetics nnet RColorBrewer]; broken = true; }; intsurvbin = derive2 { name="intsurvbin"; version="0.0.4"; sha256="119zjn1agl2j4fj4yg1pq1sqskzw93xfzppmc5n1x8llmfbxkqsj"; depends=[mgcv MHadaptive msm mvtnorm tmvtnorm]; broken = true; }; @@ -20049,16 +20245,16 @@ in with self; { irtProb = derive2 { name="irtProb"; version="1.2"; sha256="12wnvbzkh0mx9i3iyh1v2n2f2wjsjj7ad3dgv9xj949x4nbz16j0"; depends=[lattice moments]; broken = true; }; irtplay = derive2 { name="irtplay"; version="1.6.4"; sha256="128xw3ylcirfls4fif8ilnphfhpz9pn7pmg4sl1qrwqdh0xksgk2"; depends=[dplyr ggplot2 gridExtra janitor Matrix purrr reshape2 rlang statmod tidyr]; broken = true; }; isaeditor = derive2 { name="isaeditor"; version="0.1.1"; sha256="10gm3mrpi52sj5mkmdgggx8a5yh6a506hawg7yg2518ym8552hsp"; depends=[colorDF crayon dplyr glue magrittr readr rlang tibble tidyr]; broken = true; }; - isopam = derive2 { name="isopam"; version="0.9-13"; sha256="0y1yy0922kq5jxyc40gz8sk9vlzwfkfg5swmc6lk4007g9mgc8fm"; depends=[cluster vegan]; broken = true; }; isoreader = derive2 { name="isoreader"; version="1.3.2"; sha256="0d0h57imbis7g58gdn7j0pwmc1s71b8ymqwqkg3byagd0yhrxf0w"; depends=[dplyr future glue lubridate magrittr progress purrr R_utils readr rlang stringr tibble tidyr tidyselect UNF vctrs]; broken = true; }; iteRates = derive2 { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[ape apTreeshape geiger gtools MASS partitions VGAM]; broken = true; }; ivfixed = derive2 { name="ivfixed"; version="1.0"; sha256="0a26zrkvz0ffq4zxdx5vhr1nvsi9c15s6gvc1zy2pddjz31x2xi5"; depends=[Formula]; broken = true; }; ivpack = derive2 { name="ivpack"; version="1.2"; sha256="0cr5acjrn41d3q0b77hlg2jmsbf1msvys9gcavm1blsryg2bc03c"; depends=[AER lmtest sandwich]; broken = true; }; ivpanel = derive2 { name="ivpanel"; version="1.0"; sha256="0irjmkw3nnd8ssidvj23lr0hihlhd9acsbaznh88lknx53ijc2qv"; depends=[Formula]; broken = true; }; jSonarR = derive2 { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[jsonlite RCurl]; broken = true; }; - jackstraw = derive2 { name="jackstraw"; version="1.3.1"; sha256="0l90ayysbmj6gzpzcglpwkpaga067imy6s7hqapmkwiy9kx8gaa1"; depends=[cluster ClusterR corpcor irlba lfa qvalue rsvd]; broken = true; }; james_analysis = derive2 { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; broken = true; }; jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; broken = true; }; + jgsbook = derive2 { name="jgsbook"; version="1.0.1"; sha256="0fkxbka4fcsa3bb0zh2fh58q44izsl1q0swa7ink2agl6yxxpmk3"; depends=[jsonlite statip]; broken = true; }; + jjAnno = derive2 { name="jjAnno"; version="0.0.3"; sha256="1xqkkqzdalpzc9d9kibc7b2lfmpzxn84f9y8pl1wjs7ins4dhsck"; depends=[dplyr ggiraphExtra ggplot2 magick magrittr]; broken = true; }; joineRmeta = derive2 { name="joineRmeta"; version="0.1.2"; sha256="0lkj3rry8kvdcl3dxrkvnql8rl3fsgc4lk5qdifhl41aws2q7ccs"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm statmod survival]; broken = true; }; jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; broken = true; }; jsr223 = derive2 { name="jsr223"; version="0.3.4"; sha256="0rir9v0qhnbl2rgkx1qz2ydj68ba9ccbdzsg6y1acczdhpl03j51"; depends=[curl jdx R6 rJava]; broken = true; }; @@ -20086,8 +20282,9 @@ in with self; { lbiassurv = derive2 { name="lbiassurv"; version="1.1"; sha256="1i6l3y4rasqpqka7j39qjx22wjbilgc9pkp05an52aysfvfxy193"; depends=[actuar]; broken = true; }; leafletR = derive2 { name="leafletR"; version="0.4-0"; sha256="0j1i971dl3smq8rcsa5s4rfmmk936k2q6xa4hppfzwhrxs3xkkkx"; depends=[brew jsonlite]; broken = true; }; learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; broken = true; }; - lfstat = derive2 { name="lfstat"; version="0.9.4"; sha256="0lm9fyw45kdkkjldkmagykn9p3l3jlw2ky3h00f7j6rqkizjm6r0"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr xts zoo]; broken = true; }; + legco = derive2 { name="legco"; version="0.1.4"; sha256="0fd1d2zf510lyrwclsy57d8lgqprk6p8c6ghxglgm6gbx9d2yrgg"; depends=[dplyr httr jsonlite]; broken = true; }; libproj = derive2 { name="libproj"; version="8.1.0-1"; sha256="16mavs0kpbn1lskfgyzgw5ns270kdvvh2991c8w26cyl23zrcys6"; depends=[cpp11 rappdirs]; broken = true; }; + libsoc = derive2 { name="libsoc"; version="0.7.3"; sha256="0baglknb67gmzr4cimlvz44f11np8glcdjdgs3jy8qlz0c8pm95p"; depends=[]; broken = true; }; likeLTD = derive2 { name="likeLTD"; version="6.3.0"; sha256="1mjf4667xd9pf2684d7vqaj54l5s9pgljn4vkfp32wzbfknq6y8r"; depends=[DEoptim gdata ggplot2 gtools rtf]; broken = true; }; limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; broken = true; }; linLIR = derive2 { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; broken = true; }; @@ -20102,7 +20299,6 @@ in with self; { lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; broken = true; }; lmec = derive2 { name="lmec"; version="1.0"; sha256="09shj01h2dl5lh7ch0wayr7qyhlmk0prv3p1vfgy91sn0wpbqlxr"; depends=[mvtnorm]; broken = true; }; lmem_qtler = derive2 { name="lmem.qtler"; version="0.1.1"; sha256="0qbllj66y294n1m8dsyrnwyvzscbzg8mb2dmjyghcrfaz925vkin"; depends=[lattice lme4 pastecs qtl stringr]; broken = true; }; - lmomPi = derive2 { name="lmomPi"; version="0.5.0"; sha256="07ggfzgvhc6kkqs8bbs6z01rbhgb0ki2y4li6r0nkiby1wcpx0py"; depends=[lmom stringr]; broken = true; }; logcondens_mode = derive2 { name="logcondens.mode"; version="1.0.1"; sha256="1i2c2prk5j863p3a3q3xnsv684igfi5czz3dib7zfjldpf0qyaq7"; depends=[distr logcondens]; broken = true; }; longclust = derive2 { name="longclust"; version="1.2.3"; sha256="1g45d5pak2vhbjrcmxxrk9jyrdxkqwy45phzpsw6b2bjyrgr4i7g"; depends=[]; broken = true; }; longitudinalcascade = derive2 { name="longitudinalcascade"; version="0.3.2.1"; sha256="03nqglxyz6qfalxdnyh2aarxv3agn0b3r4nhsji4v9703h4m1fvg"; depends=[dplyr ggplot2 lubridate rlang scales survival tidyr zoo]; broken = true; }; @@ -20114,6 +20310,7 @@ in with self; { lshorth = derive2 { name="lshorth"; version="0.1-6"; sha256="0nbjakx0zx4fg09fv26pr9dlrbvb7ybi6swg84m2kwjky8399vvx"; depends=[]; broken = true; }; ltbayes = derive2 { name="ltbayes"; version="0.4"; sha256="0kv5k56hmc1m7bv5pmmmk46822szsgwqgpwydn0x56az7xn6hjk6"; depends=[mcmc MHadaptive numDeriv]; broken = true; }; ltsbase = derive2 { name="ltsbase"; version="1.0.1"; sha256="16p5ln9ak3h7h0icv5jfi0a3fbw5wdqs3si69sjbn8f5qs2hz7yp"; depends=[MASS robustbase]; broken = true; }; + lxb = derive2 { name="lxb"; version="1.5"; sha256="16x1mvhxqhvibzmv6mlqcmkgic2sha1xagf7r2azmn4z8x1m9w6n"; depends=[]; broken = true; }; lymphclon = derive2 { name="lymphclon"; version="1.3.0"; sha256="1jns41sk2rx1j3mg06dzy434k30gpfhbkn6s47fmyv1y8701vfl0"; depends=[corpcor expm MASS]; broken = true; }; mGSZ = derive2 { name="mGSZ"; version="1.0"; sha256="08l98i75h2h8kx9ksvzp5qr8jhf0l6n4j7rg8fcn7hk8chn8v5zh"; depends=[Biobase GSA ismev limma MASS]; broken = true; }; mQTL = derive2 { name="mQTL"; version="1.0"; sha256="0k80xvkr0b0mp3bj2s558fjxi2zf4k7ggnw6hsjm8lr84i108dks"; depends=[MASS outliers qtl]; broken = true; }; @@ -20122,7 +20319,7 @@ in with self; { machina = derive2 { name="machina"; version="0.1.6"; sha256="009mzqb5jgnilj9b5ldmm5600008bljlqacm8jjxvqsfnfdfg8zv"; depends=[DT httr jsonlite lubridate rhandsontable xts]; broken = true; }; majesticR = derive2 { name="majesticR"; version="0.1.1"; sha256="0x23p4js9cfnj8c33cp0fql5pvs4fn4frbbzpq85mxjhiifkxxpf"; depends=[jsonlite urltools]; broken = true; }; mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; broken = true; }; - mapfit = derive2 { name="mapfit"; version="0.9.9"; sha256="027wi8ffbk4ks8h2i29i9gspxc74a8dr39bbk09sa5v4x22j62sz"; depends=[deformula Matrix]; broken = true; }; + maple = derive2 { name="maple"; version="0.99.5"; sha256="1cg7grvnrfzdqghlfv5bsii6ips3mykgaw85vx0z9jafhdfpd32f"; depends=[dbarts dplyr ggalluvial ggplot2 plotly rlang Seurat shiny spruce]; broken = true; }; marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; broken = true; }; matR = derive2 { name="matR"; version="0.9.1"; sha256="1qw2vqmpq7gc3dmr9r000ccjj7xa0h82waxnvryz3l17ggryyjjm"; depends=[BIOM_utils MGRASTer]; broken = true; }; matie = derive2 { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; broken = true; }; @@ -20130,11 +20327,12 @@ in with self; { maxTPR = derive2 { name="maxTPR"; version="0.1.0"; sha256="13x5rz0mfha5pzahkk4x67ncz9v77sa690cyl6wigwsldsrvzr3h"; depends=[aucm Rsolnp]; broken = true; }; maxadjAUC = derive2 { name="maxadjAUC"; version="0.1.0"; sha256="04zdaqmavhhrj63s2k5pqncvlzbfnxan7r0fagfka9dypwwcl5qm"; depends=[aucm Hmisc Rsolnp survival]; broken = true; }; mcGlobaloptim = derive2 { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; broken = true; }; + mcbette = derive2 { name="mcbette"; version="1.15"; sha256="0wilbz4zwjnzxfa3nail10a8y1cjq1myb2lqyj01k8s5kpwb0isq"; depends=[babette beastier beautier curl devtools mauricer Rmpfr testit txtplot]; broken = true; }; mcc = derive2 { name="mcc"; version="1.0"; sha256="0p661a870bvh3xhcahqqq85azn9rjl3vacjy96jsdn86irj4s0vi"; depends=[]; broken = true; }; mcgibbsit = derive2 { name="mcgibbsit"; version="1.1.0"; sha256="09ydcbjz3abmh46966v01dh26fy79dfklk3zjf262zp3c62ld9yf"; depends=[coda]; broken = true; }; mcheatmaps = derive2 { name="mcheatmaps"; version="1.0.0"; sha256="1gglm32xpmim38m7fziczgqfbpcq2899lxardsrzg6j1vhmf765y"; depends=[gridBase]; broken = true; }; mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; broken = true; }; - mcmcabn = derive2 { name="mcmcabn"; version="0.4"; sha256="0ym7ngai8pv9xalh1s53p8f96s8xpc05zi6ryih2rjv449ib06kq"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; broken = true; }; + mclustAddons = derive2 { name="mclustAddons"; version="0.7"; sha256="122cl8f1x5s4bkbdajxh5j44i30fl0zasfi95szhzb1ddv7blm3l"; depends=[foreach iterators mclust Rcpp RcppArmadillo]; broken = true; }; mcsm = derive2 { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[coda MASS]; broken = true; }; mdsr = derive2 { name="mdsr"; version="0.2.6"; sha256="1j5sh26b11x77bhl004pid3m3p756ylsmps7zzkvb54q5i5gdv9r"; depends=[babynames DBI dbplyr downloader dplyr fs ggplot2 htmlwidgets kableExtra RMariaDB skimr stringr tibble webshot]; broken = true; }; meaRtools = derive2 { name="meaRtools"; version="1.0.4"; sha256="1nxyvdq4670696mhg0svxxlvk9hnr8szai8b18pw6754kmw1bjvn"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; broken = true; }; @@ -20142,15 +20340,19 @@ in with self; { medmod = derive2 { name="medmod"; version="1.0.0"; sha256="1f7bzdcjnbz9izlfblxcaa85qxx8kzn62qgjd3qlb7jl7mdy5q54"; depends=[ggplot2 jmvcore lavaan R6]; broken = true; }; met = derive2 { name="met"; version="0.1.0"; sha256="0714103xzc4n178307czxmcv7ygjiigjr9b6xnj240ljp7qmln19"; depends=[DiPs]; broken = true; }; metScanR = derive2 { name="metScanR"; version="1.2.3"; sha256="1v7zrxj3wspx6f5n5s75skcygbf3r85rn4p0z9iwbrbrgxwi4qgs"; depends=[geosphere leaflet matlab plyr RCurl]; broken = true; }; + metabolighteR = derive2 { name="metabolighteR"; version="0.1.3"; sha256="0ip7cy40jndcwp8yc42pjzklv35dkxjd3pdlpwk0r0jngp7nbjim"; depends=[crayon dplyr httr magrittr purrr]; broken = true; }; metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; broken = true; }; meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; broken = true; }; mfbvar = derive2 { name="mfbvar"; version="0.5.6"; sha256="1wv46h6cr0xnvr8dxymx362skf7nf77yw84y6g48rj9mbq8kkkcj"; depends=[dplyr ggplot2 GIGrvg lubridate magrittr Rcpp RcppArmadillo RcppParallel RcppProgress stochvol tibble zoo]; broken = true; }; + mgee2 = derive2 { name="mgee2"; version="0.2"; sha256="1bhjajcjvm8brc92v6ij378i0d3vniip77m4pz7n02sgswj0w61a"; depends=[ggplot2 MASS]; broken = true; }; mgpd = derive2 { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; broken = true; }; miRada = derive2 { name="miRada"; version="1.13.8-8"; sha256="1m6rm65pv4r16r0s5ih69nr3v2rnpsvpdpk07pi7k4f7v9wck71v"; depends=[]; broken = true; }; miceMNAR = derive2 { name="miceMNAR"; version="1.0.2"; sha256="1s607icaf3c25mn8xdi3zkzmm8m7qd9a6vjdlz5j7ig2gc9f2y2d"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; broken = true; }; microclustr = derive2 { name="microclustr"; version="0.1.0"; sha256="04xn8p4wgmxq1jbxawq0rhx6l7y1kddlbdfid8zsi4x4arkz7hvp"; depends=[Rcpp]; broken = true; }; + microdemic = derive2 { name="microdemic"; version="0.6.0"; sha256="1w4zh0vagnar95l5b8cgmcvp8q7vk2iba5g8d8g2ywynqiqcx5fc"; depends=[crul data_table httpcode jsonlite tibble]; broken = true; }; migrbc = derive2 { name="migrbc"; version="2.0.9"; sha256="1nbxdm70a9lvbp4sw78719hdpbqnziw1y7r4xk8i390q2c195am1"; depends=[dplyr futile_logger lubridate Rcpp stringr]; broken = true; }; minimist = derive2 { name="minimist"; version="0.1"; sha256="007y829d766b1v6wkrhk7pkg99r38bvmhc8bwvs8rs13dr7444ln"; depends=[V8]; broken = true; }; + minval = derive2 { name="minval"; version="0.8-2"; sha256="06anbb90c8wg0374ykmb6chcwrcdyi903jkbrmrv3kgx511l699z"; depends=[]; broken = true; }; minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; broken = true; }; mipred = derive2 { name="mipred"; version="0.0.1"; sha256="0kijn2xj0dh28rm2sjgd8j1a3c5avc3fjfvvcmzfasvxqdjflv6j"; depends=[mice]; broken = true; }; miraculix = derive2 { name="miraculix"; version="0.9.23"; sha256="0i08v5hq43296k3sa7akpq4h5dmvpkgn7cfpqwdyp0qaxkqk0k0s"; depends=[RandomFieldsUtils]; broken = true; }; @@ -20166,16 +20368,16 @@ in with self; { mleur = derive2 { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[fGarch lattice stabledist urca]; broken = true; }; mlgt = derive2 { name="mlgt"; version="0.16"; sha256="1nvdq6mvgr39ikkf73aggsb6pmbw132injj8fdkr8hgcmwm6lgd9"; depends=[seqinr]; broken = true; }; mlica2 = derive2 { name="mlica2"; version="2.1"; sha256="0c3m1zd9x99n6lw12hfzmd59355z51xa8rhg1h7qwfn9p86r826f"; depends=[]; broken = true; }; + mlim = derive2 { name="mlim"; version="0.2.0"; sha256="04ssk3syx3cb5rcmycqfdssxcnp5nlnmnc58mr9bis129shhmvdg"; depends=[curl h2o md_log memuse mice missRanger]; broken = true; }; + mlmts = derive2 { name="mlmts"; version="1.0.1"; sha256="1j6yq4aj2kpqli6xk09ki1vrx91r2n5jasqhx361qp5rn8cn66h7"; depends=[AID caret ClusterR complexplus DescTools dtw e1071 evolqg fda_usc forecast freqdom geigen ggplot2 MASS Matrix MTS multiwave pracma pspline psych quantspec ranger Rdpack Rfast TSA TSclust TSdist tseries tseriesChaos tsfeatures waveslim]; broken = true; }; mlr3proba = derive2 { name="mlr3proba"; version="0.4.9"; sha256="1qhxwx881b482wp85chw0s9390kwyhq32bjr4rlpscb53ppqx6v5"; depends=[checkmate data_table distr6 mlr3 mlr3misc paradox R6 Rcpp survival survivalmodels]; broken = true; }; - mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="2.0.2"; sha256="0j77hq1197bans2i5rlyzx1fhyl8m2cpgiq2fh5vcvkq0rkaq2mp"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; broken = true; }; mmeta = derive2 { name="mmeta"; version="2.3"; sha256="0hyxpph2hfjwiy95r0n3h64aab5ziqp2a8gmmpp6nyc77h638czb"; depends=[aod]; broken = true; }; mmm2 = derive2 { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; broken = true; }; - mmpca = derive2 { name="mmpca"; version="2.0.1"; sha256="05vir7hjv5dccfcizyn5n6qxx2p53111if16l44a7ifg5k599xj9"; depends=[digest gsl Rcpp RcppEigen]; broken = true; }; mnlogit = derive2 { name="mnlogit"; version="1.2.6"; sha256="0dfwpkl8g7ap5xr48smiv8vdbamd2r1liy9nwpsn0kcsr9cj65n9"; depends=[Formula lmtest mlogit]; broken = true; }; mobsim = derive2 { name="mobsim"; version="0.2.0"; sha256="0an8j5kj0cs1bjz9kwzwc54hm0zaiz5rsaw78ihldw0mx5n175gn"; depends=[Rcpp sads vegan]; broken = true; }; moc = derive2 { name="moc"; version="2.0"; sha256="0fgp8dg9qf7aw1qawmszlxs4bcccqmd87y4kkzdqggm807c2k5gh"; depends=[]; broken = true; }; - mockthat = derive2 { name="mockthat"; version="0.2.6"; sha256="12srlafk3ykzhrw65s1qzw3l566j285hi28rzrcpbgyr12720raa"; depends=[]; broken = true; }; modcmfitr = derive2 { name="modcmfitr"; version="0.1.0"; sha256="1d6fi7pc10w2a97h1prhkg5cvzmxjp11c5bwrz90zry0m8anwjyh"; depends=[gtools nloptr]; broken = true; }; + modelROC = derive2 { name="modelROC"; version="1.0"; sha256="0iyx7c98ym7dy6pfssj7474h9wjpzjwy0fyc5bnqyi1lmjgd508k"; depends=[do ggplot2 ROCit survivalROC tmcn]; broken = true; }; modelfree = derive2 { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; broken = true; }; modiscloud = derive2 { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; broken = true; }; moezipfR = derive2 { name="moezipfR"; version="1.0.2"; sha256="0sfl1c7cvm1milcglcvz9lyvgricsdm7shx0jxyn50y7xz0padww"; depends=[tolerance VGAM]; broken = true; }; @@ -20192,13 +20394,14 @@ in with self; { mpe = derive2 { name="mpe"; version="1.0"; sha256="17bgdbg1zrf78djd3mwycidwibxvsis7pwkrcynvghcc8l2zfci9"; depends=[mvtnorm]; broken = true; }; mppa = derive2 { name="mppa"; version="1.0"; sha256="06v6vq2nfh4b407x2gyvcp5wbdrcnk3m8y58akapi66lj8xplcx4"; depends=[]; broken = true; }; mptools = derive2 { name="mptools"; version="1.0.1"; sha256="1g4fbfwxv9hir0jn22nh9854blgkh0b5jan3lv0888izj4isa1hc"; depends=[animation lattice latticeExtra raster rasterVis sp viridis zoo]; broken = true; }; + mritc = derive2 { name="mritc"; version="0.5-2"; sha256="07b1b2k1ka43ikj2mhwnazw3ig7w10bf759fimxpksvk5k6wanx2"; depends=[lattice misc3d oro_nifti]; broken = true; }; msSurv = derive2 { name="msSurv"; version="1.2-2"; sha256="02qm3mq17d2yj5mbz6gapd3zfi1wmiad5hpyimcb39impk43n2hf"; depends=[class graph lattice]; broken = true; }; msap = derive2 { name="msap"; version="1.1.8"; sha256="0z5lm782jjb9w1h5vgz8bmxjdcrq9zb3xp1w5cb479jjc7krlgg3"; depends=[ade4 ape]; broken = true; }; mssqlR = derive2 { name="mssqlR"; version="1.0.0"; sha256="0qdnm7cx9cg14vfcnkmcjqr1jpxsw8xlrbnxldvzz44mzv2n878l"; depends=[magrittr RODBC]; broken = true; }; mtconnectR = derive2 { name="mtconnectR"; version="1.2.1"; sha256="0hl46h535mjqwgrhmxlixhfsych3blzcynffp55nr1ynrra4dn06"; depends=[data_table dplyr dtw ggplot2 lubridate magrittr plyr proxy stringr tidyr XML]; broken = true; }; mtk = derive2 { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[lhs rgl sensitivity stringr XML]; broken = true; }; muStat = derive2 { name="muStat"; version="1.7.0"; sha256="18727xj9i9hcnpdfnl1b9wd6cp7wl1g74byqpda2gsrcardl57wz"; depends=[]; broken = true; }; - mudfold = derive2 { name="mudfold"; version="1.1.2"; sha256="1g66axwrrvlsb03yhwa16pvxbl2wvpm7fzzl6nlw0cxlh99w7r33"; depends=[boot broom dplyr ggplot2 glmnet mgcv reshape2 zoo]; broken = true; }; + mudens = derive2 { name="mudens"; version="1.3.2"; sha256="18kv8xfmmmk0dyw64lwrlrks0gana0s7gaff6nxs59ndgb1pj6yp"; depends=[Rcpp survival]; broken = true; }; multdyn = derive2 { name="multdyn"; version="1.6"; sha256="06yab2lmxp7lc7zjk8n194mn5vza0yjbp276iair3ry35my4h3v8"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; broken = true; }; multiPIM = derive2 { name="multiPIM"; version="1.4-3"; sha256="0j7d0cgs8zcyiyibzmfhcandad76sf4gm57wkcv98bf96wkls58l"; depends=[lars penalized polspline rpart]; broken = true; }; multiband = derive2 { name="multiband"; version="0.1.0"; sha256="1f4gmy0yf9zid7kl05zncvvig6hs4nl1h9wkrkc24rxx9risw9k9"; depends=[]; broken = true; }; @@ -20222,11 +20425,12 @@ in with self; { mztwinreg = derive2 { name="mztwinreg"; version="1.0-1"; sha256="1rg6ikaqdrc7q44s3r3km8h45prnvcpzpxd7nxbmh209iz9j19ai"; depends=[mclogit rms]; broken = true; }; nCal = derive2 { name="nCal"; version="2021.9-12"; sha256="133dpy2rp8sabwdlk0wjxs9rzixzcja73im94qaw26z5xsnaydhf"; depends=[drc gdata gWidgets2 kyotil]; broken = true; }; nFCA = derive2 { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w04f66z81v0zpdihd4cbl5ra7"; depends=[]; broken = true; }; + nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; broken = true; }; ncg = derive2 { name="ncg"; version="0.1.1"; sha256="1jzkzp61cc5jxmdnl867lcrjjm7y2iw9imzprbd098p1j3w8fvj7"; depends=[]; broken = true; }; ndvtest = derive2 { name="ndvtest"; version="1.0-0"; sha256="15jqh58n63g2vr919z10d5ryhvk7325bv4gmd2xgdpi76p2dbyg0"; depends=[CompQuadForm nonnest2 Rdpack sandwich]; broken = true; }; nearfar = derive2 { name="nearfar"; version="1.2"; sha256="116rq797a5fascirz8xg465fywjf40j1k5czryvqzpik0if0w00r"; depends=[car GenSA MASS nbpMatching]; broken = true; }; + needy = derive2 { name="needy"; version="0.2"; sha256="1ixgpnwrg6ph1n5vy91qhl1mqirli9586nzkmfvzjrhdvrm0j5l0"; depends=[]; broken = true; }; neotoma = derive2 { name="neotoma"; version="1.7.4"; sha256="1fknzp7qg5l5lkfvqfld0x67zj3xmi8vivsg70m47mbpcs92hmcf"; depends=[analogue dplyr httr jsonlite leaflet plyr reshape2 xml2]; broken = true; }; - netdiffuseR = derive2 { name="netdiffuseR"; version="1.22.4"; sha256="1fm6pg3cavyhsjracwgb386dxj83dcfmx8apdhr5mbavd2h7pw42"; depends=[boot igraph MASS MatchIt Matrix network networkDynamic Rcpp RcppArmadillo sna SparseM viridisLite]; broken = true; }; networkTomography = derive2 { name="networkTomography"; version="0.3"; sha256="1hd7av231zz0d2f9ql5p6c95k7dj62hp0shdfshmyfjh8900amw7"; depends=[coda igraph KFAS limSolve plyr Rglpk]; broken = true; }; networkreporting = derive2 { name="networkreporting"; version="0.1.1"; sha256="1ssbz8lw4mlwcblwfbyffvayvb2gmihq4qlz5q9222fn4aa3raxd"; depends=[dplyr functional ggplot2 lazyeval plyr reshape2 stringr surveybootstrap]; broken = true; }; networksis = derive2 { name="networksis"; version="2.1-3"; sha256="1kvil3qs7xd94ak9jgvj1nss55gjg0y7d35zmass9h1hjkcrq7bg"; depends=[network]; broken = true; }; @@ -20253,8 +20457,9 @@ in with self; { nowcasting = derive2 { name="nowcasting"; version="1.1.4"; sha256="1nj34cbkv1xlhmcfhxs32shv00mz02rp95xj59qkq5by53sx8qwq"; depends=[corpcor DBI httr lubridate magic matlab Matrix RCurl RMySQL vars xts zoo]; broken = true; }; npbr = derive2 { name="npbr"; version="1.7"; sha256="02jqf2xahz757gb4hpizwpgsvvz2d23s3pl02958925pdvkv6bp5"; depends=[Benchmarking np quadprog Rglpk]; broken = true; }; npm = derive2 { name="npm"; version="1.0.0"; sha256="01v913ylsh895yxkkpyviplcxcc3c90znccvjp7wbflmxxnvrasd"; depends=[assertthat cli crayon erratum]; broken = true; }; + nprcgenekeepr = derive2 { name="nprcgenekeepr"; version="1.0.5"; sha256="1j6pfc694yf1m42a0fhlbh5wdbmgs61fswbw7083h69d2sr2zq05"; depends=[anytime futile_logger htmlTable lubridate Matrix plotrix readxl Rlabkey rlang shiny stringi WriteXLS]; broken = true; }; npst = derive2 { name="npst"; version="2.0"; sha256="1y5ij3nmh9pj6p97jpx75g26sk508mznr0l67cwj381zfb77hj1n"; depends=[]; broken = true; }; - nse = derive2 { name="nse"; version="1.20"; sha256="037z164m78hdbwgnaa10jq50ngg3n9iigmyd1r5gz6hgvsr5sbnf"; depends=[coda mcmc mcmcse np Rcpp sandwich]; broken = true; }; + nsdr = derive2 { name="nsdr"; version="0.1.1"; sha256="1p73aj465lk52n3dikkqi54zm2f9v00ikpmry10p42qhfkgrw61l"; depends=[]; broken = true; }; nser = derive2 { name="nser"; version="1.4.3"; sha256="0q6gz79pwwsyz6rrjrhwr87mbzq2qv7bbc1dj7q4gfdviggkgar8"; depends=[curl dplyr googleVis httr jsonlite lubridate magrittr purrr readr RSelenium rvest stringr tidyverse]; broken = true; }; nsgp = derive2 { name="nsgp"; version="1.0.5"; sha256="0piajjz3r71dnjw7lwpjhbaygxcrbbxfvhf8p3n2izyr2pw5fml9"; depends=[MASS]; broken = true; }; ntwk = derive2 { name="ntwk"; version="1.0.0"; sha256="1c12c3pq992f02z3ikx17zv2djq9d9ly232ha0j5jswsksqzx024"; depends=[assertthat copCAR ghyp Matrix mvtnorm pracma zoo]; broken = true; }; @@ -20266,7 +20471,6 @@ in with self; { omd = derive2 { name="omd"; version="1.0"; sha256="0s1wcgivqapbkzjammga8m12gqgw113729kzfzgn02nsfzmsxspv"; depends=[]; broken = true; }; oncomodel = derive2 { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; broken = true; }; onlineVAR = derive2 { name="onlineVAR"; version="0.1-1"; sha256="01z2d91mbdjvwwiqjq1dbqp50jbc9v6d7nw4gs7d1abhsqyiqa13"; depends=[lattice]; broken = true; }; - onls = derive2 { name="onls"; version="0.1-1"; sha256="0m7pnlzkqwzi6jncjzxzfvznipd4wg03zd9fc0ymwm9jvhm4p14g"; depends=[minpack_lm]; broken = true; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; broken = true; }; optAUC = derive2 { name="optAUC"; version="1.0"; sha256="0j1llzqa3n7kqw3i5bb7284z0hi6s5jbjfl9zap0l7xf6hg4x1dn"; depends=[MASS]; broken = true; }; optCluster = derive2 { name="optCluster"; version="1.3.2"; sha256="11k6mbkwmvhmcvnc4hgl8aa3j7n7im5g3040dgppahzdndysgnw3"; depends=[cluster gplots kohonen MBCluster_Seq mclust RankAggreg]; broken = true; }; @@ -20278,6 +20482,7 @@ in with self; { osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; broken = true; }; osmgeosample = derive2 { name="osmgeosample"; version="0.1"; sha256="1vcdisf147mcdqkc35czcphjh6rhaix9vy6l5inknaarmmajri3x"; depends=[dplyr geoR mapview nngeo osmdata pdist processx qpdf Rcpp rgdal sf sp splancs tibble]; broken = true; }; osmose = derive2 { name="osmose"; version="3.3.4"; sha256="144mklbish59amzz7j95qmn98yqlz3bqzd2rp03wg9f5s69bxjj6"; depends=[fields knitr mgcv ncdf4 rlist rmarkdown stringr]; broken = true; }; + osmplotr = derive2 { name="osmplotr"; version="0.3.3"; sha256="0p94phv7jn0q9k25300zz59ldfphm9xgy6i7n3r8xj4zay0c7mf2"; depends=[e1071 ggm ggplot2 mapproj osmdata rgeos sp spatstat spatstat_core spatstat_geom]; broken = true; }; ospsuite_utils = derive2 { name="ospsuite.utils"; version="1.2.0"; sha256="16gcqnkqz0nz7mhgbnji3p1k2vv43jypx2xbcz4i4d8v1368akly"; depends=[R6]; broken = true; }; otvPlots = derive2 { name="otvPlots"; version="0.2.1"; sha256="0fjx0kl9y77mazwy7lg4mxc9sg8ysvvbl4h3k6bvfpnjm5x62hff"; depends=[data_table ggplot2 gridExtra Hmisc moments quantreg scales stringi]; broken = true; }; outsider = derive2 { name="outsider"; version="0.1.1"; sha256="082yygvjs31clz8b3p59gkc26249gqp8hl1071gm6zi4vi2ng43x"; depends=[crayon curl jsonlite outsider_base remotes tibble yaml]; broken = true; }; @@ -20295,10 +20500,12 @@ in with self; { pairedCI = derive2 { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; broken = true; }; pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; broken = true; }; pairwiseComparisons = derive2 { name="pairwiseComparisons"; version="3.1.6"; sha256="0aiq8gr33pr5lia6cf6ak7zy5z81am5j5a0py0a2m9ljgmsgmn4s"; depends=[BayesFactor dplyr insight ipmisc parameters PMCMRplus purrr rlang WRS2]; broken = true; }; + palaeoSig = derive2 { name="palaeoSig"; version="2.0-3"; sha256="1sn2nbiq037l81qvrqbg7gf1312g8vy574hsfng07qk1jpx7vwkk"; depends=[assertr dplyr forcats ggplot2 ggrepel magrittr MASS mgcv purrr rioja rlang TeachingDemos tibble tidyr vegan]; broken = true; }; paleoMAS = derive2 { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[lattice MASS vegan]; broken = true; }; panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; broken = true; }; papayar = derive2 { name="papayar"; version="1.0"; sha256="11vkjhazfwfixsr6dba5jrcsr3r3mqgvj5s070b4gp70d6k1z8s5"; depends=[htmltools neurobase oro_nifti servr]; broken = true; }; param6 = derive2 { name="param6"; version="0.2.4"; sha256="0h4r2l670zvsbq0cakbm7f5yc0ghaf40kby80q3ql8lwgfnay1jd"; depends=[checkmate data_table dictionar6 R6 set6]; broken = true; }; + paramGUI = derive2 { name="paramGUI"; version="2.1.4"; sha256="0k2wkl99ji3w7xmd9k7zzvrr3dbf3237q7lxm527dnrq331pmxmi"; depends=[colorspace fields shiny shinydashboard TIMP]; broken = true; }; parboost = derive2 { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[caret doParallel glmnet iterators mboost party plyr]; broken = true; }; parcoords = derive2 { name="parcoords"; version="1.0.0"; sha256="15w0g789a2igagfrgv1978ib4ipxpfkid5jpj4q344mpdvgp6ip2"; depends=[crosstalk htmlwidgets]; broken = true; }; parfm = derive2 { name="parfm"; version="2.7.6"; sha256="1n548gaf62m56n8rlcz1mhpqxikd33vydjwl4wps441drp1dbvs0"; depends=[msm optimx sn survival]; broken = true; }; @@ -20308,6 +20515,7 @@ in with self; { partitionMap = derive2 { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; broken = true; }; parviol = derive2 { name="parviol"; version="1.1"; sha256="1sfgic86ssd5wjf9ydss9kjd3m4jmm2d1v896sjsv8bydwymbpx3"; depends=[vioplot]; broken = true; }; pastis = derive2 { name="pastis"; version="0.1-2"; sha256="0211pzj3xrmqgxjpspij95kmlpa2klpicw49n6pnz2g1fapjy2bd"; depends=[ape caper]; broken = true; }; + patPRO = derive2 { name="patPRO"; version="1.1.0"; sha256="1l6q6glklmfgivs4gw0v8q4qa57wr2bna477sn2v401hcwmgnfyn"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; broken = true; }; pathlibr = derive2 { name="pathlibr"; version="0.1.0"; sha256="0z8iz765fi1s2770p7dwwv2anihfw86kb5dwg081wb6474wiq6v8"; depends=[glue logging magrittr purrr R6 rlang]; broken = true; }; pauwels2014 = derive2 { name="pauwels2014"; version="1.0"; sha256="1b7whn13lgydc69kg1fhnwkxirw0nqq75cfvii0yg0j4p8r1lw42"; depends=[deSolve ggplot2]; broken = true; }; pbdBASE = derive2 { name="pbdBASE"; version="0.5-3"; sha256="1f90bk1mp1s03177b9g5w5ni77jzrzc1pl3bjx0w0fjbjs1myn79"; depends=[pbdMPI pbdSLAP]; broken = true; }; @@ -20316,6 +20524,7 @@ in with self; { pcaBootPlot = derive2 { name="pcaBootPlot"; version="0.2.0"; sha256="1320d969znk9xvm1ylhc3a31nynhzyjpbg1fsryq72nhf8jxijaa"; depends=[FactoMineR RColorBrewer]; broken = true; }; pds3 = derive2 { name="pds3"; version="0.5.0"; sha256="1hipi4ygk30khrrslxq3m9qdichazhrl34k444shs7gi6wjx9ilr"; depends=[rly]; broken = true; }; peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; broken = true; }; + pedigreeTools = derive2 { name="pedigreeTools"; version="0.1"; sha256="0kgbjyw9dlp4s91cyg5w0p2vn2h9pg9ixrhc5pwvkp3v1acd0xfm"; depends=[Matrix]; broken = true; }; penalizedclr = derive2 { name="penalizedclr"; version="0.1.0"; sha256="0ka27azfdj4wa1p628b99pkrfjy1x8yjyd3d5g2v8mbsfg3j3bwg"; depends=[clogitL1 penalized survival tidyverse]; broken = true; }; perARMA = derive2 { name="perARMA"; version="1.6"; sha256="0k70lcqhiiffrwzvh51asnhx68qxpnjnxadarvgpgbc7kfy7lv9x"; depends=[corpcor gnm matlab Matrix signal]; broken = true; }; permGPU = derive2 { name="permGPU"; version="0.15"; sha256="1bxydc5dw7ka45k6ban35d5xb1dw9yq9480qns8b39cc0x3acmhc"; depends=[Biobase foreach RUnit survival]; broken = true; }; @@ -20327,6 +20536,8 @@ in with self; { physx = derive2 { name="physx"; version="1.0"; sha256="1b6bx08jzfg4pxicawkn013bqrvqkp19pigxl3iwjrqclvi8mx73"; depends=[celestial cubature data_table docore MASS pracma Rcpp]; broken = true; }; phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; broken = true; }; pinbasic = derive2 { name="pinbasic"; version="1.2.2"; sha256="0mcw68wrixz2jf62nfifdgg8bnp4h1p3byivz28wi61blj8iaa75"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; broken = true; }; + pirouette = derive2 { name="pirouette"; version="1.6.5"; sha256="0fw6hbpywmk1mqfxn480sh403afrmm8shlzcbwx32pjri9ajrx1q"; depends=[ape babette beastier beautier DDD forcats magrittr mauricer mcbette nodeSub phangorn phytools plyr pryr readr stringr TESS tibble tidyr tracerer xtable]; broken = true; }; + pkgmaker = derive2 { name="pkgmaker"; version="0.32.2"; sha256="14ggsd24n5g5rvn0wl4w90ipxzmywqikh28llj89q6kpxwnv4iff"; depends=[assertthat codetools digest registry stringr withr xtable]; broken = true; }; plRasch = derive2 { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; broken = true; }; planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; broken = true; }; plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; broken = true; }; @@ -20348,7 +20559,6 @@ in with self; { portes = derive2 { name="portes"; version="5.0"; sha256="1iarvgz23979lipqyyvh8h0nd978p1nzbbjf020q11yqpl863502"; depends=[forecast]; broken = true; }; powerAnalysis = derive2 { name="powerAnalysis"; version="0.2.1"; sha256="0cma4v402n6wcb2gy9g1ymydzh8vimy9nfrrn8xhnjsf7x6jh215"; depends=[]; broken = true; }; powerHaDeX = derive2 { name="powerHaDeX"; version="1.0"; sha256="188a09jnn8xr5jx1n785gghpn3k8cqkhp76m47gixh5n9v15lzzg"; depends=[checkmate data_table expm ggplot2 glmnet lme4 lmerTest nlme plyr Rcpp signal]; broken = true; }; - powerjoin = derive2 { name="powerjoin"; version="0.0.1"; sha256="0hnk573jrpmr5k0yhfq74wksrz6ri5g21zf5853fslcxyjys1v8q"; depends=[cli dplyr generics glue lifecycle magrittr purrr rlang tibble tidyr tidyselect vctrs]; broken = true; }; prLogistic = derive2 { name="prLogistic"; version="1.2"; sha256="1abwz7nqkz2qbyqyr603kl9a3rkad3f4vxhck6a9kl80xrmfrj9s"; depends=[boot Hmisc lme4]; broken = true; }; pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; broken = true; }; praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; broken = true; }; @@ -20362,6 +20572,7 @@ in with self; { prof_tree = derive2 { name="prof.tree"; version="0.1.0"; sha256="0mjvxaacrgkzl0f1wn3fpgah4jh720safni66ri0dnriwcxis6rz"; depends=[data_tree]; broken = true; }; prognosticROC = derive2 { name="prognosticROC"; version="0.7"; sha256="0lscsyll41hpfzihdavygdzqw9xxjp48dmy4i17qsx5h01jl1h4i"; depends=[survival]; broken = true; }; proportion = derive2 { name="proportion"; version="2.0.0"; sha256="0a71f6hz6blb7550m9x0di84vp51yjhnn952301rwlrh3axf6dbr"; depends=[ggplot2 TeachingDemos]; broken = true; }; + propr = derive2 { name="propr"; version="4.2.6"; sha256="16ghgzpwz6q9zlaa0pc8wqv0wpz81c75n7zwjyr1lv9y19qwlkfg"; depends=[fastcluster ggplot2 igraph Rcpp]; broken = true; }; proteomicdesign = derive2 { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; broken = true; }; proteomics = derive2 { name="proteomics"; version="0.2"; sha256="01cd4sb79gcx8gbzl624scvjbwhgcsca1wdvvfkhsv7jfwdd2ry2"; depends=[foreach ggplot2 plyr reshape2]; broken = true; }; protoclass = derive2 { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8mwdg1a7f5h29m5l7f5m0nsmv0xc90s9cpvk8"; depends=[class]; broken = true; }; @@ -20370,6 +20581,7 @@ in with self; { psymonitor = derive2 { name="psymonitor"; version="0.0.2"; sha256="09288w2bk5jhnbyj516jqn5qb33yqqg5kqbg6ylqk7anlq2yg2sl"; depends=[doParallel foreach magrittr]; broken = true; }; psyosphere = derive2 { name="psyosphere"; version="0.1.6"; sha256="1hcas3jk2n11lyw1ysmci0sysxf7qg9h2msqqg7q9nqp5gbf90np"; depends=[geosphere ggplot2 Hmisc lubridate plyr rgdal RgoogleMaps sp]; broken = true; }; pts2polys = derive2 { name="pts2polys"; version="0.1.3"; sha256="0rmgryv0vds20npvaqvvwrhrx0grfcz9qwdy2w3bx945r0chhw39"; depends=[Rcpp]; broken = true; }; + pulsar = derive2 { name="pulsar"; version="0.3.8"; sha256="0lrhz22s4622pcf9qz040sacg2myg6l3qym695v8f0a0zvabnix8"; depends=[Matrix]; broken = true; }; pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; broken = true; }; pycno = derive2 { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; broken = true; }; qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; broken = true; }; @@ -20394,10 +20606,13 @@ in with self; { rHpcc = derive2 { name="rHpcc"; version="1.0"; sha256="0096z90mmf1j2xpb9034a5ph52m8z6n6xjh3km2vrhw63g3cpwap"; depends=[RCurl XML]; broken = true; }; rJython = derive2 { name="rJython"; version="0.0-4"; sha256="13fpcw37cca738v9idqgi3gv9avfkfwfacxj54p2c4wyg46ghnah"; depends=[rJava rjson]; broken = true; }; rKIN = derive2 { name="rKIN"; version="0.1"; sha256="1j6fdi5h869q4d1hq6ha6qyhisa0zk2qmhjrc4ahl9991d680dyn"; depends=[ggplot2 maptools MASS rgeos sp]; broken = true; }; + rKolada = derive2 { name="rKolada"; version="0.2.1"; sha256="1c1ci6dn3yqgp7qm1fih8dlq67dpbc1wlxhzcrzs0zzign47vgvd"; depends=[dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr urltools]; broken = true; }; rModeling = derive2 { name="rModeling"; version="0.0.3"; sha256="0xrjxayp59f31wwcqqkzs5my2j2lpbv1f4pp709fmqxz02vbdzhv"; depends=[caret e1071 MASS]; broken = true; }; rNMF = derive2 { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[knitr nnls]; broken = true; }; rRofex = derive2 { name="rRofex"; version="2.0.6"; sha256="0yg3bxadgmn5d7bljzn9bjzy833lfi6bwz24z52f8qcbm1nqchgb"; depends=[dplyr glue httr jsonlite later lifecycle magrittr purrr rlang tibble tidyr websocket]; broken = true; }; + rSPARCS = derive2 { name="rSPARCS"; version="0.1.0"; sha256="0k46nhkdn68c7h7bbbdfwl02bldi1m3m62zbp20kh8np9bxy1rnk"; depends=[data_table geosphere plyr raster sp spatialEco tigris]; broken = true; }; rSQM = derive2 { name="rSQM"; version="1.3.14"; sha256="0m69n2pnfv2085dln6p149a5gw0gif9xk00xmad5s9j68hwjdmym"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; broken = true; }; + rTLS = derive2 { name="rTLS"; version="0.2.5.2"; sha256="10fkd8ylj9xwvgwnirjw4n6c4vl8y5x8q4mq2zmwlpjryknx82kv"; depends=[alphashape3d boot data_table doSNOW foreach Rcpp RcppArmadillo RcppHNSW RcppProgress rgeos rgl sp]; broken = true; }; rWBclimate = derive2 { name="rWBclimate"; version="0.1.3"; sha256="0vs56hx7a85pw4jx8nb8bdlr9dbkl4zdhzhqsm0505xc3qz18vxh"; depends=[ggplot2 httr jsonlite plyr reshape2 rgdal sp]; broken = true; }; radix = derive2 { name="radix"; version="0.6"; sha256="0290n0yax8649srdjbq4439h0d9f6jsmxayyhp86igcnszcxilnb"; depends=[base64enc bookdown digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; broken = true; }; radmixture = derive2 { name="radmixture"; version="0.0.1"; sha256="0rs60xjd43lg5c9972qhpg6bsqfg2578qvrz7gz3bdip10jb1ryj"; depends=[magrittr MCMCpack plyr quadprog]; broken = true; }; @@ -20405,9 +20620,9 @@ in with self; { randaes = derive2 { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; broken = true; }; randnet = derive2 { name="randnet"; version="0.5"; sha256="131bkfzxjd3x02dj6wc2ilwpgymmm18apd4v1dd70ib4sibvir16"; depends=[AUC entropy irlba Matrix nnls poweRlaw pracma RSpectra]; broken = true; }; randomsearch = derive2 { name="randomsearch"; version="0.2.0"; sha256="0ywr4ms66p5nmq8bzy04gbvmpp0nhfyf8rvynhr2c4alqva9x3yi"; depends=[checkmate fs parallelMap ParamHelpers smoof]; broken = true; }; + ranlip = derive2 { name="ranlip"; version="1.0.1"; sha256="04jh7m8gmz0b4h507amnj708sg5qf4fzawybss01681hsnb3swnz"; depends=[Rcpp]; broken = true; }; rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; broken = true; }; rasciidoc = derive2 { name="rasciidoc"; version="4.0.2"; sha256="1k3bh1bbjrzhmz2dz98qw8ad46jk7dx7srigp22valk5jz4ni7s5"; depends=[checkmate document fritools gert highr knitr reticulate]; broken = true; }; - rasterList = derive2 { name="rasterList"; version="0.5.8"; sha256="0q7apglxzpah04463z07cpkzyd6l6dbbdhm601brzh6yk75z20vh"; depends=[raster]; broken = true; }; rasterly = derive2 { name="rasterly"; version="0.2.0"; sha256="1fv0ayh8r78qss7ikcwnj0i5x8iyz4c3icsfb554zji9bw30x7qr"; depends=[data_table ggplot2 magrittr plotly Rcpp rlang]; broken = true; }; rattle_data = derive2 { name="rattle.data"; version="1.0.2"; sha256="0cnmyzvy23jc4vz521c3jg0w4165waycvy5014l5773fy19zq75c"; depends=[]; broken = true; }; rawr = derive2 { name="rawr"; version="0.1.3"; sha256="0k0x1pmxs73j6dmjg33n4hhwjwzpnhzbmmmjza6kw7hj6lfmipx4"; depends=[clipr dplyr jsonlite rvest stringr xml2]; broken = true; }; @@ -20425,12 +20640,14 @@ in with self; { readthat = derive2 { name="readthat"; version="0.0.1"; sha256="04vnpvfa8in3gxi6nv3si59hr8hj17wq3a5n8rnpiaczg46qr1dr"; depends=[curl Rcpp]; broken = true; }; regexTestR = derive2 { name="regexTestR"; version="0.1.3"; sha256="0nnp2xlrrywpi1lmj8ymsjgiqvq8777hhdgcwjq549m7whfw6lsg"; depends=[config data_table DT golem htmltools pkgload processx purrr RColorBrewer rvest shiny shinyBS shinythemes stringr tidyr xml2]; broken = true; }; regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; broken = true; }; + regweight = derive2 { name="regweight"; version="1.0.2"; sha256="1ziqii9xlp86n6ga99glwnh2kf6pkm8m326yra40yf2w3h180pbm"; depends=[checkmate dplyr ggplot2 glue gt lpdensity rlang scales tidyr tidyselect]; broken = true; }; relMix = derive2 { name="relMix"; version="1.3.3"; sha256="03zzmsx2i7ib1mhdfk5igvr1winl9g2dfjqz2kzvcx3rl7l6hjym"; depends=[Familias gWidgets2 gWidgets2tcltk]; broken = true; }; rela = derive2 { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; broken = true; }; relaxo = derive2 { name="relaxo"; version="0.1-2"; sha256="1rzmq7q3j271s6qwwrmwidv0vxcjpgjhyiqgr6fkczkai2lbnd8x"; depends=[lars]; broken = true; }; reliaR = derive2 { name="reliaR"; version="0.01"; sha256="000nafjp386nzd0n57hshmjzippiha6s6c4nfrcwl059dzmi088i"; depends=[]; broken = true; }; repoRter_nih = derive2 { name="repoRter.nih"; version="0.1.3"; sha256="02bb4vrn0zdc3hm7ba148p18fs5g5bsfjjwnzpp54ymghfw1mq5m"; depends=[assertthat crayon dplyr httr janitor jsonlite lubridate magrittr purrr tibble]; broken = true; }; represent = derive2 { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; broken = true; }; + reproducible = derive2 { name="reproducible"; version="1.2.10"; sha256="0agphafd2khv2xk0fwqr2y3imn8fzwa3crpqbp4n3i9qkpmkmvpw"; depends=[data_table DBI digest fpCompare glue lobstr magrittr raster Require rlang RSQLite sp]; broken = true; }; restrictedMVN = derive2 { name="restrictedMVN"; version="1.0"; sha256="0qynkg244gzq0yjb0716w7g1sxdq66i11ss8jij86h2mz3ykj137"; depends=[MASS]; broken = true; }; retistruct = derive2 { name="retistruct"; version="0.6.3"; sha256="1zij37n2ja3yx6n1agdkb3lj42p01parcg6djv60bng9c2qq0wsl"; depends=[foreign geometry png R_matlab R6 rgl RImageJROI RTriangle sp ttutils]; broken = true; }; retractcheck = derive2 { name="retractcheck"; version="1.0.0"; sha256="1c4p8afh9g359s560sswcys3manc0lqvk0aqgvd09p4rpzls2dm7"; depends=[httr plyr textreadr]; broken = true; }; @@ -20441,6 +20658,7 @@ in with self; { rgr = derive2 { name="rgr"; version="1.1.15"; sha256="1mrnmbh2crhkwdi37q59hx76afvkhgzgaacg3688q7jp23d58z6x"; depends=[fastICA MASS]; broken = true; }; ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; broken = true; }; rijkspalette = derive2 { name="rijkspalette"; version="1.0.2"; sha256="00726q8s36si08ghd9sgi7ikadcj11xqwhgv8f3cml6lvwz7ppzz"; depends=[crayon imager jsonlite]; broken = true; }; + riot = derive2 { name="riot"; version="1.0.0"; sha256="1iv83z21k2a8kclfma1cq4jns4zdpgjrzajcsfl105srvv55n0s2"; depends=[cli fs Rcpp readr rlang tibble]; broken = true; }; rivervis = derive2 { name="rivervis"; version="0.46.0"; sha256="19jsl5g46jcbc0kg47bsif1wrw9z9brgvwdcxqjc89shnx3hzzfv"; depends=[]; broken = true; }; rjpdmp = derive2 { name="rjpdmp"; version="2.0.0"; sha256="0r0r58zrwab4zxhgbfhh4qk6vbbza00m8h73mz70f5kqp786i9wy"; depends=[data_table Rcpp RcppArmadillo]; broken = true; }; rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; broken = true; }; @@ -20449,10 +20667,11 @@ in with self; { rmaf = derive2 { name="rmaf"; version="3.0.1"; sha256="0w247mamwgibr5576p5c2lzaiz2lv2c25n7gw9q99s7rc4bps7j7"; depends=[]; broken = true; }; rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; broken = true; }; rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; broken = true; }; + roads = derive2 { name="roads"; version="1.0.0"; sha256="02gkxvlngf23xv3sh578ynd5jzhlsslnllbvppyasbf4izisng16"; depends=[data_table dplyr igraph raster rlang sf sp SpaDES_tools stars tidyselect units]; broken = true; }; robustfa = derive2 { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; broken = true; }; robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; broken = true; }; + rock = derive2 { name="rock"; version="0.5.5"; sha256="1c6g563fmm1anwhfnfiirlinrdzkb6z1c1zn4hr4c331wkyvihcm"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; broken = true; }; rorutadis = derive2 { name="rorutadis"; version="0.4.2"; sha256="13a7xj4qw1nd8xgrqhrki3php960lgy9gy38sg4kpvs4j2rwijzc"; depends=[ggplot2 gridExtra hitandrun Rglpk]; broken = true; }; - rosetta = derive2 { name="rosetta"; version="0.3.9"; sha256="104k6j7v41czd4g1qwifmig3zsjs3l4q5mvfab81przdb1m6k5kd"; depends=[car diptest ggplot2 ggrepel gridExtra kableExtra knitr lavaan lme4 multcompView pander plyr psych pwr rmdpartials ufs viridis]; broken = true; }; royston = derive2 { name="royston"; version="1.2"; sha256="1rywc89qzx0hldbq10201bjdhz60pq2gmgd9b9j52mza3w4canjz"; depends=[moments nortest]; broken = true; }; rpart_utils = derive2 { name="rpart.utils"; version="0.5"; sha256="00ahvmly6cdf7qhhcic0dbjlljqq8kbhx15rc7vrkd3hzd55c0im"; depends=[rpart]; broken = true; }; rpatrec = derive2 { name="rpatrec"; version="1.0.1"; sha256="0zj461frf6n5s97zq7r52q0blsn2xq2759impgz6v4pr87gmq0si"; depends=[np]; broken = true; }; @@ -20478,6 +20697,7 @@ in with self; { sampSurf = derive2 { name="sampSurf"; version="0.7-6"; sha256="1f2ndfrxz0v0di9sb17rxs3iik2qw2nj1dn7apl55b2d07nsmpk3"; depends=[boot lattice latticeExtra raster rasterVis sp]; broken = true; }; sapa = derive2 { name="sapa"; version="2.0-3"; sha256="0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc"; depends=[ifultools splus2R]; broken = true; }; saves = derive2 { name="saves"; version="0.5"; sha256="1b4mfi2851bwcp0frx079h5yl6y1bhc2s8ziigmr8kwy1y1cxw10"; depends=[]; broken = true; }; + scPOP = derive2 { name="scPOP"; version="0.1.0"; sha256="0bi9dmqj9cd8f09qmfl3d65922xn3j3jipxi6615jbk6bz67kkh9"; depends=[cluster Matrix RANN Rcpp RcppArmadillo]; broken = true; }; scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; broken = true; }; scpm = derive2 { name="scpm"; version="2.0.0"; sha256="1ib46m3i50annp90n2ih4qdxabxik4ngg9j0a5hgspsvk1i4hrvp"; depends=[interp lattice MASS Matrix mvtnorm RandomFields rgl]; broken = true; }; scrapeR = derive2 { name="scrapeR"; version="0.1.6"; sha256="1rqgqpn9rc43rh356z9gb51pjhdczr9a9mgv0i078nniq156rmlb"; depends=[RCurl XML]; broken = true; }; @@ -20502,7 +20722,7 @@ in with self; { set6 = derive2 { name="set6"; version="0.2.4"; sha256="06swz60p73a7m7rvsv1545hsr2chkk2w2hmnfwkwfz4hrbdxm709"; depends=[checkmate ooplah R6 Rcpp]; broken = true; }; severity = derive2 { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; broken = true; }; sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; broken = true; }; - shapeR = derive2 { name="shapeR"; version="0.1-5"; sha256="17fq4gsdvyniq7n4x1xdvb5kk50184i7why3pdf1djjhknym087j"; depends=[gplots jpeg MASS pixmap vegan wavethresh]; broken = true; }; + sfdep = derive2 { name="sfdep"; version="0.2.0"; sha256="04arbp8n1vpl5kksc0893vv8qh81m2mhb8fwk55r6y7zb6wpphwk"; depends=[cli rlang sf spdep]; broken = true; }; shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; broken = true; }; shinyrecap = derive2 { name="shinyrecap"; version="0.1.0"; sha256="1mic7azxz2in67g3a2ir550w8psh6kc75p6hja6m62a0yy7j2n92"; depends=[CARE1 coda conting dga future ggplot2 ipc LCMCR promises Rcapture reshape shiny shinycssloaders testthat]; broken = true; }; shinyypr = derive2 { name="shinyypr"; version="0.0.2"; sha256="1k6jsw6gnpwk90hkpa9grki0b68cab57vbd0h6ldjqr11giwcz8z"; depends=[bsplus chk dplyr DT ggplot2 lifecycle magrittr purrr readr shiny shinyjs waiter ypr]; broken = true; }; @@ -20523,6 +20743,7 @@ in with self; { smds = derive2 { name="smds"; version="1.0"; sha256="0aqf3wfn6mlsl8a32gaf9qdpyxwsx19g6mma8qzgaysdmk6vhbpd"; depends=[MASS]; broken = true; }; snappier = derive2 { name="snappier"; version="0.2.0"; sha256="0pnrmgv42kmw84ajh24as9fqyczcwsnbi8dyq20q4ndynlkrj5rb"; depends=[]; broken = true; }; snp_plotter = derive2 { name="snp.plotter"; version="0.5.1"; sha256="16apsqvkah5l0d5qcwp3lq2jspkb6n62wzr0wskmj84jblx483vv"; depends=[genetics]; broken = true; }; + snpEnrichment = derive2 { name="snpEnrichment"; version="1.7.0"; sha256="1lja1n26nr8lgbca2kraryv933jwa2w3h41appzylflf0w3liz9y"; depends=[ggplot2 snpStats]; broken = true; }; snpStatsWriter = derive2 { name="snpStatsWriter"; version="1.5-6"; sha256="04qhng888yih8gc7yd6rrxvvqf98x3c2xxz22gkwqx59waqd4jlq"; depends=[colorspace snpStats]; broken = true; }; snpar = derive2 { name="snpar"; version="1.0"; sha256="0c9myg748jm7khqs8yhg2glxgar1wcf6gyg0xwbmw0qc41myzfnq"; depends=[]; broken = true; }; sobir = derive2 { name="sobir"; version="0.1.2"; sha256="0di9mk1c1jf8yr7jpmfm19w2w3p9lz1mkgrv3bmfyab83aghvbfp"; depends=[DescTools devtools dplyr ggplot2 raster rlang scales sp statmod stringr tidyr usethis]; broken = true; }; @@ -20538,10 +20759,12 @@ in with self; { sparseSEM = derive2 { name="sparseSEM"; version="2.5"; sha256="0ig8apsi94kvbcq3i8nzmywbdizlss7c6r9bppcyl9lxgikc3cds"; depends=[]; broken = true; }; sparsebn = derive2 { name="sparsebn"; version="0.1.2"; sha256="1b1601n3nmxck6a27xqxpsa79p4xnz7yyzdfqiddn9zd2b4v9wc5"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; broken = true; }; spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; broken = true; }; + spatstat_core = derive2 { name="spatstat.core"; version="2.4-4"; sha256="0fyi8y1z919nzn47kaviln7gflhcp5qdi3gfvf7nwkdix3pkk373"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; broken = true; }; spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; broken = true; }; speccalt = derive2 { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; broken = true; }; specmine = derive2 { name="specmine"; version="3.1.6"; sha256="0ik3nsb9mrja6709fwsf97f9qbf7lmmyc2zqrm7398h3mibf64l7"; depends=[baseline caret compare e1071 ellipse genefilter GGally ggplot2 impute imputeTS MASS Metrics mrbin narray pcaPP plotly pls RColorBrewer readJDX speaq specmine_datasets]; broken = true; }; specmine_datasets = derive2 { name="specmine.datasets"; version="0.0.2"; sha256="0amqb4qy5ac1jc4g95sf4678ll3xhscyrcxq6pgh8imfyk1ifrmx"; depends=[xcms]; broken = true; }; + spectralAnalysis = derive2 { name="spectralAnalysis"; version="3.12.0"; sha256="0mz01hx86qi65k6vzz9k1j9q7gi10dh14cqvrlfy93f3kmi52q0x"; depends=[baseline BiocGenerics data_table ggplot2 hNMF jsonlite magrittr NMF nnls plotly plyr RColorBrewer signal viridis]; broken = true; }; sped = derive2 { name="sped"; version="0.2-1"; sha256="05igpk8szdcs6kjhpmd9dmjvqdg199pz3hi0rwkhdjglxivvjzjn"; depends=[pooh]; broken = true; }; spfrontier = derive2 { name="spfrontier"; version="0.2.5"; sha256="1vnvwcjbhvbmyn5rp4760amzy8k3y156q629fjymw9rw6zy45pbf"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; broken = true; }; spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; broken = true; }; @@ -20550,9 +20773,12 @@ in with self; { splashr = derive2 { name="splashr"; version="0.6.0"; sha256="0l57w5gwr0p2049z1201nlqsy23h37gsybd1lj3vycxz43ir7213"; depends=[curl dplyr formatR HARtools httr jsonlite lubridate magick openssl purrr scales stevedore stringi xml2]; broken = true; }; spm12r = derive2 { name="spm12r"; version="2.8.3"; sha256="04bv4x7p2vv9n8zi5axpkcj13h6q08lc6qyd1czvxrpdmzsp40yb"; depends=[git2r matlabr neurobase oro_nifti R_utils]; broken = true; }; sporm = derive2 { name="sporm"; version="1.1.1"; sha256="1bj795kmzjjcwvnrwg7dfz4jbfj488iydm0s79wrsgdq4chrrgyb"; depends=[]; broken = true; }; + spotifyr = derive2 { name="spotifyr"; version="2.2.3"; sha256="1gpi7d40rdx4dvx5699xj5zisz48arwni18sszvp8phvhgqbj0lh"; depends=[assertthat dplyr genius ggridges httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble tidyr xml2]; broken = true; }; spots = derive2 { name="spots"; version="0.1.0"; sha256="0q5jfb99hrlz5c1jnn4a96pg07bccbw0khfq8mvaq4r3vdykzmqy"; depends=[Matrix RSpectra]; broken = true; }; + spp = derive2 { name="spp"; version="1.16.0"; sha256="08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"; depends=[BH caTools Rcpp Rsamtools]; broken = true; }; sprm = derive2 { name="sprm"; version="1.2.2"; sha256="0iyijkjnyz4yx2cmazlnhkk0f5ls0c2q2aikwlzl13w6zbj040a8"; depends=[cvTools ggplot2 pcaPP reshape2 robustbase]; broken = true; }; sprsmdl = derive2 { name="sprsmdl"; version="0.1-0"; sha256="09klwsjp5w6p7dkn5ddmqp7m9a3zcmpr9vhcf00ynwyp1w7d26gi"; depends=[]; broken = true; }; + spruce = derive2 { name="spruce"; version="0.99.1"; sha256="1kklv4d2ycjcxv183cpqa6qn46zn8nww1z8xn4sy7ipz394i10cf"; depends=[BayesLogit dplyr ggplot2 igraph MCMCpack mvtnorm patchwork Rcpp RcppArmadillo rlang Seurat tidyr tidyselect truncnorm]; broken = true; }; spsann = derive2 { name="spsann"; version="2.2.0"; sha256="00nlrwk50ch128brzvfxld0pcpq1syks9rvwdrcf1i2pcxnva7d0"; depends=[pedometrics Rcpp sp SpatialTools]; broken = true; }; sqlutils = derive2 { name="sqlutils"; version="1.2"; sha256="0dq4idg8i4hv9xg8jllllizqf3s75pdfm1wgncdjj52xhxh169pf"; depends=[DBI roxygen2 stringr]; broken = true; }; sqp = derive2 { name="sqp"; version="0.5"; sha256="0l01zwcryv5bmzmd98gj0m5ip8nvr8lziq1awvfif1bzwvvd2kzx"; depends=[Matrix Rcpp RcppArmadillo RcppEigen Rdpack]; broken = true; }; @@ -20572,25 +20798,30 @@ in with self; { stubthat = derive2 { name="stubthat"; version="1.2.1"; sha256="130naxzvswcyadwcgldvwnxxdxbfwx5vljac7901vn3ahjp75d8z"; depends=[testthat]; broken = true; }; sublime = derive2 { name="sublime"; version="1.3"; sha256="0455fppc68azxknxjvxci4kjpcj6c1jkp9adbxqrn3qnnywaj5v2"; depends=[AnalyzeFMRI downloader oro_nifti]; broken = true; }; subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; broken = true; }; - sugarbag = derive2 { name="sugarbag"; version="0.1.3"; sha256="05j2b9vbhpkfr3xkam9wgm0w4k8blnm1ssf9cd6l5f1y2rrqizsv"; depends=[dplyr geosphere lwgeom progress purrr rlang rmapshaper sf tibble tidyr utf8]; broken = true; }; superMDS = derive2 { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; broken = true; }; - superml = derive2 { name="superml"; version="0.5.5"; sha256="13g39ny3k7rwvx681v3bgdqb5s2cz9isphv36bmx7gv43mingadi"; depends=[assertthat BH data_table Metrics R6 Rcpp RcppArmadillo]; broken = true; }; support = derive2 { name="support"; version="0.1.5"; sha256="0gs6mva1lwanq4rm8l70sid28if2l0k249ydirqkz72lz12hg1br"; depends=[BH MHadaptive nloptr randtoolbox Rcpp RcppArmadillo]; broken = true; }; supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; broken = true; }; supreme = derive2 { name="supreme"; version="1.1.0"; sha256="0y5kd911f7h754ppdpw94qw3r8vzz3yhyj5b99h3h96iifydlik6"; depends=[nomnoml shiny yaml]; broken = true; }; surrosurv = derive2 { name="surrosurv"; version="1.1.25"; sha256="05s1skjp1vzwai2nfw65ff4q2qhbj596lhfvzd1gdrbs39r90hxh"; depends=[copula eha lme4 MASS Matrix msm mvmeta optextras optimx parfm SurvCorr survival]; broken = true; }; + survJamda = derive2 { name="survJamda"; version="1.1.4"; sha256="14ly1g548ysm8jgsyrhj12zmd6i2lca7rsgby3jbwikyqyk1mx5q"; depends=[ecodist survcomp survival survivalROC survJamda_data]; broken = true; }; survMS = derive2 { name="survMS"; version="0.0.1"; sha256="0313pwf0l6wq9l4qjj1al9ybzm79kdxwzdrw6k0af706rxfzzha0"; depends=[ggplot2]; broken = true; }; survRatio = derive2 { name="survRatio"; version="0.1"; sha256="1xrqin3q3b7r8ga4i71ci97rsm4lj5ffd0720n7s563jkpnpyb9l"; depends=[ggplot2 ggpubr gridExtra survival]; broken = true; }; surveybootstrap = derive2 { name="surveybootstrap"; version="0.0.1"; sha256="13rp6gj1dgdzcjbi2403pldygp1dyqx8zj0r1nvyghpi06x5gpb7"; depends=[dplyr functional plyr Rcpp RcppArmadillo stringr]; broken = true; }; surveyeditor = derive2 { name="surveyeditor"; version="1.0"; sha256="073219bcn1hlxl9ql6gncfvgn0m37pz5sb7h94nq6lf35dymq5zq"; depends=[]; broken = true; }; surveysd = derive2 { name="surveysd"; version="1.3.0"; sha256="0d5xjdlccqaa1h437rz5zq6a829rpz426m55jgprhfpcps1wfhbk"; depends=[data_table ggplot2 laeken Rcpp]; broken = true; }; + survivalREC = derive2 { name="survivalREC"; version="1.0"; sha256="1c4qvk2qd5ffn4kfkglwn3iyisnd2y0hzzn92c57vb94d4h057hx"; depends=[KernSmooth survival]; broken = true; }; survxai = derive2 { name="survxai"; version="0.2.2"; sha256="09ig561754kjzpay2hy3n62zlk0bgwkjy8vnslrr428r8m1lj0qr"; depends=[breakDown ggplot2 pec prodlim scales survival survminer]; broken = true; }; + svars = derive2 { name="svars"; version="1.3.9"; sha256="1i9wnfrgr9x6qfqhl9bc4wiz4wxmzjfcmg7wvy3zjrfszmibaf78"; depends=[clue copula DEoptim expm ggplot2 pbapply Rcpp RcppArmadillo reshape2 steadyICA strucchange vars zoo]; broken = true; }; svdvisual = derive2 { name="svdvisual"; version="1.1"; sha256="02mzh2cy4jzb62fd4m1iyq499fzwar99p12pyanbdnmqlx206mc2"; depends=[lattice]; broken = true; }; svmplus = derive2 { name="svmplus"; version="1.0.1"; sha256="08cfywrbaxyacqd3l75lysb23ahqbs80959iqkjbb125aafmhvni"; depends=[MASS Matrix quadprog]; broken = true; }; swissdd = derive2 { name="swissdd"; version="1.1.4"; sha256="0ad260b4sfism5q1jxjazg6q33283ncld1m7gfdrps3xg1kyfirs"; depends=[dplyr ggplot2 httr jsonlite lubridate purrr RCurl sf stringr tibble tidyr]; broken = true; }; switchnpreg = derive2 { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[expm fda HiddenMarkov MASS]; broken = true; }; + sybil = derive2 { name="sybil"; version="2.2.0"; sha256="05ccq2m4z6akslymdm2vd3x99pi9z0ha1xcnhwvwcvibhqn9hmd5"; depends=[lattice Matrix]; broken = true; }; + sybilDynFBA = derive2 { name="sybilDynFBA"; version="1.0.2"; sha256="0351qlvyynygjf43q93gkqzzaff3v6gynvbks1ix1mank3afn226"; depends=[sybil]; broken = true; }; sybilccFBA = derive2 { name="sybilccFBA"; version="3.0.1"; sha256="1y94d6ajf0l492nrd8wsz3b6x724zcyhipasgyx65nx3sgha6yp8"; depends=[Matrix sybil]; broken = true; }; + sybilcycleFreeFlux = derive2 { name="sybilcycleFreeFlux"; version="2.0.2"; sha256="0s8yqzn7llzby5v1p7is7qv0m8dzwf14r3m32slf898nxrs131xr"; depends=[MASS Matrix sybil]; broken = true; }; symbols = derive2 { name="symbols"; version="1.1"; sha256="1234rx3divhg60p0h0zn11viqn51fm6b8876m6rip2i6z8vrg319"; depends=[shape]; broken = true; }; + symphony = derive2 { name="symphony"; version="0.1.0"; sha256="0pwl9ahiv0xxc7j6448cja77fvcng28gdwhhr1z0qmhjsdcxadxq"; depends=[class data_table dplyr ggplot2 ggrastr ggrepel harmony irlba magrittr Matrix purrr RANN RColorBrewer Rcpp RcppArmadillo rlang tibble tidyr uwot]; broken = true; }; synRNASeqNet = derive2 { name="synRNASeqNet"; version="1.0"; sha256="05ncwbv8kvvhqqrxa8qq7s0jc6krs5a56ph04z50iwgd91rzyi7x"; depends=[GenKern igraph KernSmooth parmigene]; broken = true; }; synfd = derive2 { name="synfd"; version="0.1.3"; sha256="1h8vfrfw00449vjbj6z4y7m5p7rxzvqjcykyxw5sb473f63gr5px"; depends=[L1pack Rdpack]; broken = true; }; systemicrisk = derive2 { name="systemicrisk"; version="0.4.2"; sha256="021ypw9fag5kmk2q041pj2jfzgfg640yda7wvh0yzdmg73p6fvsw"; depends=[lpSolve Rcpp]; broken = true; }; @@ -20600,6 +20831,7 @@ in with self; { tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; broken = true; }; tabxplor = derive2 { name="tabxplor"; version="1.1.0"; sha256="03m4v9zpqy62kjrbjp6asc9k90fy00gl0si34nmdaqdvj1pr2s0f"; depends=[cli crayon data_table DescTools dplyr forcats kableExtra magrittr pillar purrr rlang stringi stringr tibble tidyr tidyselect vctrs]; broken = true; }; tangles = derive2 { name="tangles"; version="0.8.1"; sha256="06a5hn5hkvgr6pcjz3n0vi1zwmv00wypi5f62agqh8mas80v44vh"; depends=[digest raster sp]; broken = true; }; + tangram = derive2 { name="tangram"; version="0.8.1"; sha256="1vmh3wk4vk25x6i5z9wrxdlhald406a6rfw1pivv7xrw659kaznv"; depends=[base64enc digest htmltools knitr magrittr R6 stringi stringr]; broken = true; }; taxotools = derive2 { name="taxotools"; version="0.0.129"; sha256="07i09vx5gwgy2sv4rgklbjsx38yd4pn5xshd8xgipk5yrvvxygd9"; depends=[plyr rmarkdown sqldf stringdist stringi stringr taxize wikitaxa]; broken = true; }; tbart = derive2 { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; broken = true; }; tcensReg = derive2 { name="tcensReg"; version="0.1.7"; sha256="07wwn65c4q2ngafxhdd9vl0y1wambfy158mf38skxm295yidd05n"; depends=[maxLik Rdpack]; broken = true; }; @@ -20611,7 +20843,6 @@ in with self; { threeboost = derive2 { name="threeboost"; version="1.1"; sha256="033vwn42ys81w6z90w5ii41xfihjilk61vdnsgap269l9l0c8gmn"; depends=[Matrix]; broken = true; }; thsls = derive2 { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; broken = true; }; thunder = derive2 { name="thunder"; version="0.3.0"; sha256="0lzaab5acgy4s7qkq10l0yfdgrsya74757a025j205jin4m49hai"; depends=[aiRthermo climate dplyr Rcpp]; broken = true; }; - tibblify = derive2 { name="tibblify"; version="0.1.0"; sha256="0mdi9x36nrlcbchl7b2rlf4j1k0y6c7657aznm7xa0396ciij5fk"; depends=[crayon purrr rlang tibble vctrs]; broken = true; }; tidyMicro = derive2 { name="tidyMicro"; version="1.47"; sha256="02pc6rh0l7xdrqhihi53zp17x0walc0mpm70spm7yrwzkbc486lv"; depends=[ade4 broom car cowplot dplyr Evomorph factoextra ggplot2 ggrepel gridExtra latex2exp lme4 lsr magrittr MASS Matrix plotly plyr png purrr rlang scales scatterplot3d shapes stringr ThreeWay tibble tidyr tidyverse vegan VGAM]; broken = true; }; tidylab = derive2 { name="tidylab"; version="4.1.1"; sha256="052wgx4dfbr806b9r0cfblkwaf1qnrlf5ngm1c029ggss3br7ki4"; depends=[cli crayon decorators dplyr microservices purrr rstudioapi tibble usethat]; broken = true; }; tidyndr = derive2 { name="tidyndr"; version="0.2.1"; sha256="0scjqnyl78aqqc03adlv3v0i67k3pi2a6m0cg6cxypaxhzzb2xg0"; depends=[dplyr forcats janitor lubridate magrittr purrr rlang stringr tibble tidyr tidyselect vroom]; broken = true; }; @@ -20627,7 +20858,7 @@ in with self; { tlsh = derive2 { name="tlsh"; version="0.1.0"; sha256="0106y17cr3hq09ahy3rxhxqzgc0655w2jr0s3iyr8zvxsdv5ahb5"; depends=[bit64 blink igraph plyr]; broken = true; }; tm_plugin_webmining = derive2 { name="tm.plugin.webmining"; version="1.3"; sha256="1694jidf01ilyk286q43bjchh1gg2fk33a2cwsf5jxv7jky3gl7h"; depends=[boilerpipeR NLP RCurl RJSONIO tm XML]; broken = true; }; tmle_npvi = derive2 { name="tmle.npvi"; version="0.10.0"; sha256="00jav1ql3lv18wh9msxnjvz36z2ds44fdi6lrp1pfphh1in4vdcl"; depends=[geometry MASS Matrix R_methodsS3 R_oo R_utils]; broken = true; }; - toRvik = derive2 { name="toRvik"; version="1.1.0"; sha256="1x5xz6wngn6svkf9awzlr71lsp9mk9w640fx5y12aqjrrw9q2x7v"; depends=[cli crayon data_table dplyr glue httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tidyr withr]; broken = true; }; + toRvik = derive2 { name="toRvik"; version="1.1.1"; sha256="09b4c5j3wsiawx5pc1n6ga4qs1s0ybavh1drz6s2ikrpdvb62724"; depends=[cli crayon data_table dplyr glue httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tidyr withr]; broken = true; }; tobit1 = derive2 { name="tobit1"; version="0.1-3"; sha256="08rq1h3psxjzzfna6krji4ixrbd43v77qb9k00v1rysarlqyg0k1"; depends=[Formula generics margins numDeriv prediction Rdpack tibble]; broken = true; }; torchaudio = derive2 { name="torchaudio"; version="0.2.0"; sha256="1bzx428lzjdwb9ds2pcq7nlalg75s7bvmiimjw3k8lvbq50yjlyh"; depends=[fs glue rappdirs Rcpp rlang torch withr]; broken = true; }; tosls = derive2 { name="tosls"; version="1.0"; sha256="03nqwahap504yvcksvxdhykplbzmf5wdwgpzm7svn8bymdc472v2"; depends=[Formula]; broken = true; }; @@ -20636,20 +20867,25 @@ in with self; { trackr = derive2 { name="trackr"; version="0.10.7"; sha256="0h7ihymdvfvnnyxfxjwshslrxngh3i2ksqvhxynrp46m20mwjavd"; depends=[CodeDepends fastdigest ggplot2 gridGraphics histry htmltools lattice miniUI RJSONIO rlang rmarkdown roprov rsolr shiny]; broken = true; }; translate = derive2 { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; broken = true; }; translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; broken = true; }; - treePlotArea = derive2 { name="treePlotArea"; version="1.3.0"; sha256="0y433q57xw1dxlxxqkyrfjdcgymcccakp1as82y949zxl3jbra4r"; depends=[fritools sf]; broken = true; }; + translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; broken = true; }; treelet = derive2 { name="treelet"; version="1.1"; sha256="0k3qhxjg7ws6jfhcvvv9jmy26v2wzi4ghnxnwpjm8nh7b90lbysd"; depends=[]; broken = true; }; treeman = derive2 { name="treeman"; version="1.1.4"; sha256="1rlq8sklvpj6an8x9wvs3501y6dpl2vhl5zfmz0yvmif04msf49v"; depends=[ape bigmemory plyr RJSONIO stringr]; broken = true; }; treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; broken = true; }; + treetop = derive2 { name="treetop"; version="0.0.4"; sha256="0lisrbmzkil723jwcj422zglr78lbryny02wmnaw7zv2w9gw3xac"; depends=[geometry lidR pryr raster rasterVis RColorBrewer rgdal rgeos rgl sf shiny sp spatstat_core spatstat_geom stars]; broken = true; }; triggerstrategy = derive2 { name="triggerstrategy"; version="1.1.0"; sha256="1gly2brw0glcnx8is4mrlrbxgnma57vpfid5lkpz2wdakwn7y2by"; depends=[GA gsrsb ldbounds mvtnorm nleqslv]; broken = true; }; trimTrees = derive2 { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; broken = true; }; trioGxE = derive2 { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[gtools mgcv msm]; broken = true; }; + trip = derive2 { name="trip"; version="1.8.5"; sha256="160dp9ji8j4w2fwh62l6cp485iy5n5is451rbgf28d5q0prd912c"; depends=[crsmeta dplyr geodist glue MASS raster reproj rlang sp spatstat_core spatstat_geom traipse viridis]; broken = true; }; tropicalSparse = derive2 { name="tropicalSparse"; version="0.1.0"; sha256="1ay6i3pzz5lpvznxqln31mijp86p6z0df7rvp0gm4lxvn294m7f8"; depends=[]; broken = true; }; trueskill = derive2 { name="trueskill"; version="0.1"; sha256="0mqvm64fcsxjlh789lqdk6l28q31yhh6jjirwjlgbpxxb90c5107"; depends=[]; broken = true; }; truncgof = derive2 { name="truncgof"; version="0.6-0"; sha256="0b499i9zjwvva5jfl9fj02jjrgy8myxqfjwa0cjg0jrpgxczgwg8"; depends=[MASS]; broken = true; }; + truthiness = derive2 { name="truthiness"; version="1.2.5"; sha256="0cssqlrilx2lglr2f53yysqgf604g4y326ijf8avlg6v5l6hlcr1"; depends=[dplyr DT emmeans ez forcats ggplot2 lme4 magrittr MASS ordinal purrr Rdpack readr rmarkdown tibble tidyr]; broken = true; }; tsc = derive2 { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw6f14zvcsjhrmmdfd4bmwh36y"; depends=[]; broken = true; }; + tsgui = derive2 { name="tsgui"; version="0.2.1"; sha256="0crm2ripxpjaz1cqz9lkj3y9xj4ia0hlq4lvz1rff0wq6d5w79dn"; depends=[RandomFieldsUtils tcltk2 tkrplot]; broken = true; }; ttwa = derive2 { name="ttwa"; version="0.8.5.1"; sha256="1lhypcwssq0dspizvln3w4dg16ad6mz8cj4w34c5vsrayqid7fyn"; depends=[data_table]; broken = true; }; tumblR = derive2 { name="tumblR"; version="1.2"; sha256="1qili2c9wb6hpjjf7m0gyvdymzls5w4pghjkyi3sbp0q7ayhbh12"; depends=[httr RCurl RJSONIO stringr]; broken = true; }; turfR = derive2 { name="turfR"; version="0.8-7"; sha256="007jmkppfv1x4zzvvd65fhg5k15ybjhsya2zfjgwm77wm34y81ca"; depends=[dplyr]; broken = true; }; + tutorial = derive2 { name="tutorial"; version="0.4.3"; sha256="0sxdlpw0w4azlaxdlk36ycrric6pbj2zi4nyv26pgsp0cr1hrx6r"; depends=[base64enc knitr markdown rjson]; broken = true; }; tvd = derive2 { name="tvd"; version="0.1.0"; sha256="07al7gpm81a16q5nppsyc5rhv6zzkcvw72isx955b1q189v073aw"; depends=[Rcpp]; broken = true; }; twiddler = derive2 { name="twiddler"; version="0.5-0"; sha256="0r16nfk2afcw7w0j0n3g0sjs07dnafrp88abwcqg3jyvldp3kxnx"; depends=[]; broken = true; }; uFTIR = derive2 { name="uFTIR"; version="0.1.4"; sha256="1blgwn6i0dadmr7vml6rbniv103mgr9hgx2dwgcxbagfyv00ah24"; depends=[raster Rcpp RcppArmadillo sp]; broken = true; }; @@ -20658,12 +20894,12 @@ in with self; { unbalanced = derive2 { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; broken = true; }; unfoldr = derive2 { name="unfoldr"; version="0.7.1"; sha256="1khas7d04g4y2kwldnsja5xk1n5mys2s66pln3l0gqlsbk67na12"; depends=[]; broken = true; }; uniftest = derive2 { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; broken = true; }; + uniswappeR = derive2 { name="uniswappeR"; version="0.6.0"; sha256="0n180v0kya6djkd3zngn4zvqzga3dhav41r94ckbzb1yww5ck1vd"; depends=[dplyr ggplot2 ghql httr jsonlite lubridate patchwork purrr reticulate rlang scales tibble tidyr]; broken = true; }; uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; broken = true; }; uplifteval = derive2 { name="uplifteval"; version="0.1.0"; sha256="1gnn40c47rpx40j210bz6fb48d70p6spv3drr8hd5b3vzfz6686c"; depends=[dplyr ggplot2 gridExtra whisker]; broken = true; }; usethat = derive2 { name="usethat"; version="0.3.0"; sha256="0i6nw3vgll6i31l95iflhq88ssw86pmz46jgw8g6k6f58rgnykmc"; depends=[microservices purrr usethis withr]; broken = true; }; usethis2 = derive2 { name="usethis2"; version="0.2.0"; sha256="0ljvfgwg73y71yvyz2pp4c1rzgiqk1x7kmgswxa1ay05zwdgyi0x"; depends=[microservices purrr usethis withr]; broken = true; }; valuer = derive2 { name="valuer"; version="1.1.2"; sha256="0mbwzsvy34ppngyxdzpd9w1r4f00cik4maqab9kpiflrrv9xdp78"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; broken = true; }; - vapour = derive2 { name="vapour"; version="0.8.5"; sha256="14sxn4vdig31vflrbyzpkqfwdcf9xj468wxd7yicvca0ibmr80yf"; depends=[Rcpp]; broken = true; }; vbdm = derive2 { name="vbdm"; version="0.0.4"; sha256="1rbff0whhbfcf6q5wpr3ws1n4n2kcr79yifcni12vxg69a3v6dd3"; depends=[]; broken = true; }; vbsr = derive2 { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; broken = true; }; vcrpart = derive2 { name="vcrpart"; version="1.0-4"; sha256="1mg87jpdih33lalxhfcxbri439d4cgi7hqdrnvijr7qabjmnc7p4"; depends=[formula_tools nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; broken = true; }; @@ -20693,13 +20929,13 @@ in with self; { wordbankr = derive2 { name="wordbankr"; version="1.0.0"; sha256="1jcls9pw0qwf14d9f1kwyd77yrwmcx7k4hzs1h2dli29mvi6hcxg"; depends=[assertthat DBI dbplyr dplyr glue jsonlite lifecycle purrr quantregGrowth rlang RMySQL robustbase stringr tidyr]; broken = true; }; wordmatch = derive2 { name="wordmatch"; version="1.0"; sha256="0zscp361qf79y1zsliga18hc7wj36cnydshrqb9pv67b65njrznz"; depends=[plyr reshape2]; broken = true; }; wvtool = derive2 { name="wvtool"; version="1.0"; sha256="0x9awj6g5lzqp2lhwgh9ib7jmfdzyhwazrjvw1vwacqqfhbz8qxv"; depends=[]; broken = true; }; - wwntests = derive2 { name="wwntests"; version="1.0.1"; sha256="1algk2f55dg526zjw2ycfx2dq13m3lvfs75444iyp8fvq7j3wbcs"; depends=[ftsa MASS rainbow sde]; broken = true; }; x12GUI = derive2 { name="x12GUI"; version="0.13.0"; sha256="1mga7g9gwb3nv2qs27lz4n9rp6j3svads28hql88sxaif6is3nk1"; depends=[cairoDevice Hmisc lattice RGtk2 stringr x12]; broken = true; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; broken = true; }; xlsimple = derive2 { name="xlsimple"; version="1.0.5"; sha256="1snamzq6yljiqakqd6492ylznr9kfl8w0lnaayfn14fk3w03skck"; depends=[XLConnect]; broken = true; }; xmeta = derive2 { name="xmeta"; version="1.3-0"; sha256="1yyqxrdfn23sqfa9765vj5fcwz2v46jvaa9wjkv1w4mvb2k2si4k"; depends=[aod glmmML MASS metafor mvmeta numDeriv plotrix]; broken = true; }; xpose_nlmixr = derive2 { name="xpose.nlmixr"; version="0.3.0"; sha256="1qxcq18mp5zxc7karixjfi93zm5mvpfnvp8sd8x0ibdbq8vk20my"; depends=[crayon dplyr ggplot2 magrittr nlme nlmixr rlang stringr tibble tidyr vpc xpose]; broken = true; }; xspliner = derive2 { name="xspliner"; version="0.0.4"; sha256="1j3wlw39r3ahhdfq3rks1zhnlmz14f4wk7bl7gf94yffasqg6k2r"; depends=[dplyr ggplot2 magrittr mgcv pdp pROC purrr tidyr]; broken = true; }; + xtreg2way = derive2 { name="xtreg2way"; version="1.0.0"; sha256="0wllz0frakmadavgpqhd2b8fiw6wgwh5wzd270czc6cm5bq9gfng"; depends=[MASS Matrix pracma]; broken = true; }; xtune = derive2 { name="xtune"; version="0.1.0"; sha256="0bpf1cx7v7q0a1jip04xd0bjg9ilagrf7wg7a9y0m6wgw7s2b9jn"; depends=[glmnet selectiveInference]; broken = true; }; xyz = derive2 { name="xyz"; version="0.2"; sha256="13w4sb4pvgciwr8wsz785dafj2k2kpx7znz46r5d32wx88vkycp4"; depends=[Rcpp]; broken = true; }; yakmoR = derive2 { name="yakmoR"; version="0.1.1"; sha256="09aklz79s0911p2wnpd7gc6vrbr9lmiskhkahsc63pdigggmq9f7"; depends=[BBmisc checkmate Rcpp]; broken = true; }; @@ -20709,4 +20945,6 @@ in with self; { yowie = derive2 { name="yowie"; version="0.1.0"; sha256="1sm3dg4sirvlb17ciwldvnc1zzfgwxm38x1k2n99nwa6sygn1nrw"; depends=[tsibble]; broken = true; }; yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; broken = true; }; zGPS_AO = derive2 { name="zGPS.AO"; version="0.1.0"; sha256="18dqssnj4gch1yg0qvrj4j2ry95sy6a9z8yz2zi8nzhhsj8dz1qq"; depends=[doParallel doRNG dplyr foreach ggplot2 hrbrthemes MASS plotly pscl questionr viridis]; broken = true; }; + zbank = derive2 { name="zbank"; version="0.1.0"; sha256="0vzvlri3sncvbz2cdg8wzlpskm1lq9ji0jrfy5cx4ib19m6gxhpc"; depends=[crul jsonlite tibble]; broken = true; }; + ziphsmm = derive2 { name="ziphsmm"; version="2.0.6"; sha256="0lm6m2g9jd1v7gxv4viych8c59phbvz1yly1ydgajl8q251d8n87"; depends=[pracma Rcpp RcppArmadillo]; broken = true; }; } diff --git a/third_party/nixpkgs/pkgs/development/ruby-modules/gem-config/default.nix b/third_party/nixpkgs/pkgs/development/ruby-modules/gem-config/default.nix index 236570be0d..ccc4430ca8 100644 --- a/third_party/nixpkgs/pkgs/development/ruby-modules/gem-config/default.nix +++ b/third_party/nixpkgs/pkgs/development/ruby-modules/gem-config/default.nix @@ -14,7 +14,7 @@ # gems that don't behave correctly, fixes are already provided in the form of # derivations. # -# This seperates "what to build" (the exact gem versions) from "how to build" +# This separates "what to build" (the exact gem versions) from "how to build" # (to make gems behave if necessary). { lib, fetchurl, writeScript, ruby, libkrb5, libxml2, libxslt, python2, stdenv, which diff --git a/third_party/nixpkgs/pkgs/development/tools/analysis/nix-linter/default.nix b/third_party/nixpkgs/pkgs/development/tools/analysis/nix-linter/default.nix index cd33742623..aa60f5aa75 100644 --- a/third_party/nixpkgs/pkgs/development/tools/analysis/nix-linter/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/analysis/nix-linter/default.nix @@ -40,4 +40,8 @@ mkDerivation rec { homepage = "https://github.com/Synthetica9/nix-linter"; license = lib.licenses.bsd3; maintainers = [ lib.maintainers.marsam ]; + + # doesn't build on ghc92 + hydraPlatforms = lib.platforms.none; + broken = true; } diff --git a/third_party/nixpkgs/pkgs/development/tools/analysis/radare2/default.nix b/third_party/nixpkgs/pkgs/development/tools/analysis/radare2/default.nix index cd03eb0bab..72562d4935 100644 --- a/third_party/nixpkgs/pkgs/development/tools/analysis/radare2/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/analysis/radare2/default.nix @@ -30,7 +30,7 @@ let # FIXME: Compare revision with - # https://github.com/radareorg/radare2/blob/master/libr/asm/arch/arm/v35arm64/Makefile#L26-L27 + # https://github.com/radareorg/radare2/blob/master/libr/arch/p/arm/v35arm64/Makefile#L26-L27 arm64 = fetchFromGitHub { owner = "radareorg"; repo = "vector35-arch-arm64"; @@ -47,21 +47,23 @@ let in stdenv.mkDerivation rec { pname = "radare2"; - version = "5.7.8"; + version = "5.8.0"; src = fetchFromGitHub { owner = "radare"; repo = "radare2"; rev = version; - hash = "sha256-+/9SeILuDCUaYwPhhN6z3vQFicd1Bh8N/yicZTybR5o="; + hash = "sha256-9bDwtMNru7tG0L735y+Vrcg7Htk/TV9SVZn7WP4Ap4c="; }; preBuild = '' - cp -r ${arm64} ../libr/asm/arch/arm/v35arm64/arch-arm64 - chmod -R +w ../libr/asm/arch/arm/v35arm64/arch-arm64 + pushd ../libr/arch/p/arm/v35arm64 + cp -r ${arm64} arch-arm64 + chmod -R +w arch-arm64 - cp -r ${armv7} ../libr/asm/arch/arm/v35arm64/arch-armv7 - chmod -R +w ../libr/asm/arch/arm/v35arm64/arch-armv7 + cp -r ${armv7} arch-armv7 + chmod -R +w arch-armv7 + popd ''; postFixup = lib.optionalString stdenv.isDarwin '' diff --git a/third_party/nixpkgs/pkgs/development/tools/analysis/svlint/default.nix b/third_party/nixpkgs/pkgs/development/tools/analysis/svlint/default.nix index ef4e31e948..390b25b642 100644 --- a/third_party/nixpkgs/pkgs/development/tools/analysis/svlint/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/analysis/svlint/default.nix @@ -1,24 +1,25 @@ { lib , rustPlatform -, fetchFromGitHub +, fetchCrate }: rustPlatform.buildRustPackage rec { pname = "svlint"; - version = "0.5.1"; + version = "0.6.1"; - src = fetchFromGitHub { - owner = "dalance"; - repo = "svlint"; - rev = "v${version}"; - sha256 = "sha256-BgkzbKRcZkot3qkwPqSE9QkH3A3HNDuLjpFzKsU+Wb0="; + src = fetchCrate { + inherit pname version; + sha256 = "sha256-rPgURBjhfCRO7XFtr24Y7Dvcm/VEv7frq8p6wvtgjdY="; }; - cargoSha256 = "sha256-HeFh8H7IN3m4HiEH1QbCBROslzVCzYxGIaeyM4K7gcs="; + cargoSha256 = "sha256-IFoK52Qmw34oghAwlGtGFLl9MWXtJkMcx86jIqiwjuQ="; + + cargoBuildFlags = [ "--bin" "svlint" ]; meta = with lib; { description = "SystemVerilog linter"; homepage = "https://github.com/dalance/svlint"; + changelog = "https://github.com/dalance/svlint/blob/v${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ trepetti ]; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/appthreat-depscan/default.nix b/third_party/nixpkgs/pkgs/development/tools/appthreat-depscan/default.nix index 8544dffb22..461b250fa6 100644 --- a/third_party/nixpkgs/pkgs/development/tools/appthreat-depscan/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/appthreat-depscan/default.nix @@ -5,13 +5,13 @@ python3.pkgs.buildPythonApplication rec { pname = "appthreat-depscan"; - version = "3.4.0"; + version = "3.5.3"; src = fetchFromGitHub { owner = "AppThreat"; repo = "dep-scan"; rev = "refs/tags/v${version}"; - hash = "sha256-Gp0JXjtU8TZl/k6HHWvMvdggIgyn4zqLyyBqiPtlkA8="; + hash = "sha256-D/i1KGKPuhayKU8jaXhWnVgpU5Z/SG12AW8R7bgSQh8="; }; propagatedBuildInputs = with python3.pkgs; [ diff --git a/third_party/nixpkgs/pkgs/development/tools/ashpd-demo/default.nix b/third_party/nixpkgs/pkgs/development/tools/ashpd-demo/default.nix index 9d873b8461..9b6d00c0ef 100644 --- a/third_party/nixpkgs/pkgs/development/tools/ashpd-demo/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/ashpd-demo/default.nix @@ -65,9 +65,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/tools/azure-static-sites-client/default.nix b/third_party/nixpkgs/pkgs/development/tools/azure-static-sites-client/default.nix new file mode 100644 index 0000000000..60d1511472 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/azure-static-sites-client/default.nix @@ -0,0 +1,97 @@ +{ lib +, stdenv +, fetchurl +, autoPatchelfHook +, curl +, icu70 +, libkrb5 +, lttng-ust +, openssl_1_1 +, zlib +, azure-static-sites-client + # "latest", "stable" or "backup" +, versionFlavor ? "stable" +}: +let + versions = lib.importJSON ./versions.json; + flavor = with lib; head (filter (x: x.version == versionFlavor) versions); + fetchBinary = runtimeId: fetchurl { + url = flavor.files.${runtimeId}.url; + sha256 = flavor.files.${runtimeId}.sha; + }; + sources = { + "x86_64-linux" = fetchBinary "linux-x64"; + "x86_64-darwin" = fetchBinary "macOS"; + }; +in +stdenv.mkDerivation { + pname = "StaticSitesClient-${versionFlavor}"; + version = flavor.buildId; + + src = sources.${stdenv.targetPlatform.system} or (throw "Unsupported platform"); + + nativeBuildInputs = [ + autoPatchelfHook + ]; + + buildInputs = [ + curl + icu70 + openssl_1_1 + libkrb5 + lttng-ust + stdenv.cc.cc.lib + zlib + ]; + + dontUnpack = true; + dontBuild = true; + + installPhase = '' + runHook preInstall + + install -m755 "$src" -D "$out/bin/StaticSitesClient" + + for icu_lib in 'icui18n' 'icuuc' 'icudata'; do + patchelf --add-needed "lib''${icu_lib}.so.${with lib; head (splitVersion (getVersion icu70.name))}" "$out/bin/StaticSitesClient" + done + + patchelf --add-needed 'libgssapi_krb5.so' \ + --add-needed 'liblttng-ust.so' \ + --add-needed 'libssl.so.1.1' \ + "$out/bin/StaticSitesClient" + + runHook postInstall + ''; + + # Stripping kills the binary + dontStrip = true; + + # Just make sure the binary executes sucessfully + doInstallCheck = true; + installCheckPhase = '' + runHook preInstallCheck + + $out/bin/StaticSitesClient version + + runHook postInstallCheck + ''; + + passthru = { + # Create tests for all flavors + tests = with lib; genAttrs (map (x: x.version) versions) (versionFlavor: + azure-static-sites-client.override { inherit versionFlavor; } + ); + updateScript = ./update.sh; + }; + + meta = with lib; { + description = "Azure static sites client"; + homepage = "https://github.com/Azure/static-web-apps-cli"; + sourceProvenance = with lib.sourceTypes; [ binaryNativeCode ]; + license = licenses.unfree; + mainProgram = "StaticSitesClient"; + maintainers = with maintainers; [ veehaitch ]; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/tools/azure-static-sites-client/update.sh b/third_party/nixpkgs/pkgs/development/tools/azure-static-sites-client/update.sh new file mode 100755 index 0000000000..156771e7f1 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/azure-static-sites-client/update.sh @@ -0,0 +1,9 @@ +#!/usr/bin/env nix-shell +#!nix-shell -i bash -p curl + +set -euo pipefail + +dirname="$(dirname "$0")" + +curl -O --silent --output-dir "$dirname" 'https://swalocaldeploy.azureedge.net/downloads/versions.json' +echo "" >> "$dirname/versions.json" diff --git a/third_party/nixpkgs/pkgs/development/tools/azure-static-sites-client/versions.json b/third_party/nixpkgs/pkgs/development/tools/azure-static-sites-client/versions.json new file mode 100644 index 0000000000..0cb5de0902 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/azure-static-sites-client/versions.json @@ -0,0 +1,59 @@ +[ + { + "version": "latest", + "buildId": "1.0.021731", + "publishDate": "2022-12-14T02:22:20.0230853Z", + "files": { + "linux-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021731/linux/StaticSitesClient", + "sha": "d2f88cf8b855169534c7e330dd95385b993b1c0f83331306e685faa8468a82b5" + }, + "win-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021731/windows/StaticSitesClient.exe", + "sha": "525d13ebffd79ea9663a15a4bd2e6d49bca72d20aa44838aa4b83133943d450c" + }, + "osx-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021731/macOS/StaticSitesClient", + "sha": "5de3ac4b205d3871e7a8ff3b5869f2a57002277ac7fa6317032239d114e25ab8" + } + } + }, + { + "version": "stable", + "buildId": "1.0.021731", + "publishDate": "2022-12-14T02:22:20.0230853Z", + "files": { + "linux-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021731/linux/StaticSitesClient", + "sha": "d2f88cf8b855169534c7e330dd95385b993b1c0f83331306e685faa8468a82b5" + }, + "win-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021731/windows/StaticSitesClient.exe", + "sha": "525d13ebffd79ea9663a15a4bd2e6d49bca72d20aa44838aa4b83133943d450c" + }, + "osx-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021731/macOS/StaticSitesClient", + "sha": "5de3ac4b205d3871e7a8ff3b5869f2a57002277ac7fa6317032239d114e25ab8" + } + } + }, + { + "version": "backup", + "buildId": "1.0.021671", + "publishDate": "2022-12-08T00:34:47.6310685Z", + "files": { + "linux-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021671/linux/StaticSitesClient", + "sha": "306c2d24cbc6461cdf1fe29e9206ccb9d452ba3514ee9d67a1d7e0f8edbc036f" + }, + "win-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021671/windows/StaticSitesClient.exe", + "sha": "ee868ca5e73a6ad8758698c168bb01d07b66288d353813fefe41d441f82b9f1f" + }, + "osx-x64": { + "url": "https://swalocaldeploy.azureedge.net/downloads/1.0.021671/macOS/StaticSitesClient", + "sha": "5ef513530a45d4b8e135e272f7e7112e900fbb8c8137c19e645a694e71b98c74" + } + } + } +] diff --git a/third_party/nixpkgs/pkgs/development/tools/buf/buf-tests-dont-use-file-transport.patch b/third_party/nixpkgs/pkgs/development/tools/buf/buf-tests-dont-use-file-transport.patch deleted file mode 100644 index a26f41d719..0000000000 --- a/third_party/nixpkgs/pkgs/development/tools/buf/buf-tests-dont-use-file-transport.patch +++ /dev/null @@ -1,51 +0,0 @@ -commit e9219b88de5ed37af337ee2d2e71e7ec7c0aad1b -Author: Robbert van Ginkel -Date: Thu Oct 20 16:43:28 2022 -0400 - - Fix git unit test by using fake git server rather than file:// (#1518) - - More recent versions of git fix a CVE by disabling some usage of the - `file://` transport, see - https://github.blog/2022-10-18-git-security-vulnerabilities-announced/#cve-2022-39253. - We were using this transport in tests. - - Instead, use https://git-scm.com/docs/git-http-backend to serve up this - repository locally so we don't have to use the file protocol. This - should be a more accurate tests, since we mostly expect submodules to - come from servers. - -diff --git a/private/pkg/git/git_test.go b/private/pkg/git/git_test.go -index 7b77b6cd..7132054e 100644 ---- a/private/pkg/git/git_test.go -+++ b/private/pkg/git/git_test.go -@@ -17,6 +17,8 @@ package git - import ( - "context" - "errors" -+ "net/http/cgi" -+ "net/http/httptest" - "os" - "os/exec" - "path/filepath" -@@ -213,6 +215,21 @@ func createGitDirs( - runCommand(ctx, t, container, runner, "git", "-C", submodulePath, "add", "test.proto") - runCommand(ctx, t, container, runner, "git", "-C", submodulePath, "commit", "-m", "commit 0") - -+ gitExecPath, err := command.RunStdout(ctx, container, runner, "git", "--exec-path") -+ require.NoError(t, err) -+ t.Log(filepath.Join(string(gitExecPath), "git-http-backend")) -+ // https://git-scm.com/docs/git-http-backend#_description -+ f, err := os.Create(filepath.Join(submodulePath, ".git", "git-daemon-export-ok")) -+ require.NoError(t, err) -+ require.NoError(t, f.Close()) -+ server := httptest.NewServer(&cgi.Handler{ -+ Path: filepath.Join(strings.TrimSpace(string(gitExecPath)), "git-http-backend"), -+ Dir: submodulePath, -+ Env: []string{"GIT_PROJECT_ROOT=" + submodulePath}, -+ }) -+ t.Cleanup(server.Close) -+ submodulePath = server.URL -+ - originPath := filepath.Join(tmpDir, "origin") - require.NoError(t, os.MkdirAll(originPath, 0777)) - runCommand(ctx, t, container, runner, "git", "-C", originPath, "init") diff --git a/third_party/nixpkgs/pkgs/development/tools/buf/default.nix b/third_party/nixpkgs/pkgs/development/tools/buf/default.nix index 5acd05013f..75b75c0158 100644 --- a/third_party/nixpkgs/pkgs/development/tools/buf/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/buf/default.nix @@ -1,7 +1,6 @@ { lib , buildGoModule , fetchFromGitHub -, fetchpatch , protobuf , git , testers @@ -11,35 +10,22 @@ buildGoModule rec { pname = "buf"; - version = "1.9.0"; + version = "1.11.0"; src = fetchFromGitHub { owner = "bufbuild"; repo = pname; rev = "v${version}"; - sha256 = "sha256-KnG1FUdC8xpW/wI4E8+RzO0StKF+N7Wx1jTWNm4302M="; + hash = "sha256-h32G6skJ2vWay2iwoqkvBFlzafwHVilYKHVtZES3RvE="; }; - vendorSha256 = "sha256-e/hkJoQ1GkSl4mhhgYVB4POult87DzWOXRLGyDVP+M0="; + vendorHash = "sha256-Hjr/SZK9dVID+VP7KFZkFmJn+te7cmI2ARu2l7wTzLg="; patches = [ # Skip a test that requires networking to be available to work. ./skip_test_requiring_network.patch # Skip TestWorkspaceGit which requires .git and commits. ./skip_test_requiring_dotgit.patch - # Remove reliance of tests on file protocol which is disabled in git by default now - # Rebased upstream change https://github.com/bufbuild/buf/commit/bcaa77f8bbb8f6c198154c7c8d53596da4506dab - ./buf-tests-dont-use-file-transport.patch - # Make TestCyclicImport tests deterministic (see https://github.com/bufbuild/buf/pull/1551) - (fetchpatch { - url = "https://github.com/bufbuild/buf/commit/75b5ef4c84f5953002dff95a1c66cb82b0e3b06f.patch"; - sha256 = "sha256-pKF3VXkzttsTTT2r/Z37ug9nnu8gRdkfmv/aTOhAJpw="; - }) - # Make TestDuplicateSyntheticOneofs check deterministic (see https://github.com/bufbuild/buf/pull/1579) - (fetchpatch { - url = "https://github.com/bufbuild/buf/commit/9e72aa314e6f02b36793caa5f6068394cbdcb98c.patch"; - sha256 = "sha256-6NEF3sP1EQ6cQxkH2xRyHxAD0OrXBlQQa05rLK998wo="; - }) ]; nativeBuildInputs = [ installShellFiles ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/build-managers/rebar3/default.nix b/third_party/nixpkgs/pkgs/development/tools/build-managers/rebar3/default.nix index 5685996970..8a0ff951b9 100644 --- a/third_party/nixpkgs/pkgs/development/tools/build-managers/rebar3/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/build-managers/rebar3/default.nix @@ -94,7 +94,11 @@ let fi ''; }; - rebar3WithPlugins = { plugins ? [ ], globalPlugins ? [ ] }: + + # Alias rebar3 so we can use it as default parameter below + _rebar3 = rebar3; + + rebar3WithPlugins = { plugins ? [ ], globalPlugins ? [ ], rebar3 ? _rebar3 }: let pluginLibDirs = map (p: "${p}/lib/erlang/lib") (lib.unique (plugins ++ globalPlugins)); globalPluginNames = lib.unique (map (p: p.packageName) globalPlugins); diff --git a/third_party/nixpkgs/pkgs/development/tools/build-managers/sbt-extras/default.nix b/third_party/nixpkgs/pkgs/development/tools/build-managers/sbt-extras/default.nix index c3042ef2c1..aa7f997d19 100644 --- a/third_party/nixpkgs/pkgs/development/tools/build-managers/sbt-extras/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/build-managers/sbt-extras/default.nix @@ -3,14 +3,14 @@ stdenv.mkDerivation rec { pname = "sbt-extras"; - rev = "14623b935766e11a0a3f6ab1f686bb1c5d244b21"; - version = "2022-10-17"; + rev = "5eeee846642c8226931263ed758ef80f077cadaf"; + version = "2022-11-11"; src = fetchFromGitHub { owner = "paulp"; repo = "sbt-extras"; inherit rev; - sha256 = "nwhNevyLOzkYdpm1AK5I4ByJ7VdnlgwcSjXV11pzZkw="; + sha256 = "2eUGQa0SdfnENbnjy9ZDxd0lKhUrzmTyDLB4fupqVIs="; }; dontBuild = true; diff --git a/third_party/nixpkgs/pkgs/development/tools/build-managers/scala-cli/sources.json b/third_party/nixpkgs/pkgs/development/tools/build-managers/scala-cli/sources.json index 6fb1463abc..f2d895598f 100644 --- a/third_party/nixpkgs/pkgs/development/tools/build-managers/scala-cli/sources.json +++ b/third_party/nixpkgs/pkgs/development/tools/build-managers/scala-cli/sources.json @@ -1,17 +1,21 @@ { - "version": "0.1.17", + "version": "0.1.19", "assets": { "aarch64-darwin": { "asset": "scala-cli-aarch64-apple-darwin.gz", - "sha256": "0p3z4wvindcb9wahq2q8ca24zgl05qb3z2asmqi2z54pqfkc21d7" + "sha256": "1n5x07n3g7r8cx22mv9prfq1gs9sjj41xdj615lbs4dbfjp8z66d" + }, + "aarch64-linux": { + "asset": "scala-cli-aarch64-pc-linux.gz", + "sha256": "02mwinm4ggpqr9j6c0ap1nsa4bgad5h3xgkplamwrzqa2kvqxx2i" }, "x86_64-darwin": { "asset": "scala-cli-x86_64-apple-darwin.gz", - "sha256": "17zj3g62b27blbdfa3j4lzvs3v13jyy7428zxalkpdx8ixy0ghyy" + "sha256": "0cz5dd6f3j6czrbjiz9l6bf0ycfrba9h2wjpa6l80nn86yyr7i4r" }, "x86_64-linux": { "asset": "scala-cli-x86_64-pc-linux.gz", - "sha256": "0dm7jhsvrjb73wyvvds17r779gcm00yvsy31arc8552df5nkq4iz" + "sha256": "19fcj631gwg6cjx3q5rqywgdafw18bdjkan52jj2awh2vxpikgdm" } } } diff --git a/third_party/nixpkgs/pkgs/development/tools/bundletool/default.nix b/third_party/nixpkgs/pkgs/development/tools/bundletool/default.nix index 6e683e0939..6863ef9e0f 100644 --- a/third_party/nixpkgs/pkgs/development/tools/bundletool/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/bundletool/default.nix @@ -2,11 +2,11 @@ stdenvNoCC.mkDerivation rec { pname = "bundletool"; - version = "1.13.1"; + version = "1.13.2"; src = fetchurl { url = "https://github.com/google/bundletool/releases/download/${version}/bundletool-all-${version}.jar"; - sha256 = "sha256-owXj7FSR98IPuaWkUGpv4e6c4c6XIYFsxZZH0OWYcu8="; + sha256 = "sha256-sbX7IYFcU9gwKzHKC8xtmZKVE2XImeNT4RYOx+cSI2Y="; }; dontUnpack = true; diff --git a/third_party/nixpkgs/pkgs/development/tools/cambalache/default.nix b/third_party/nixpkgs/pkgs/development/tools/cambalache/default.nix index 0fc470ca9a..e2e7157425 100644 --- a/third_party/nixpkgs/pkgs/development/tools/cambalache/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/cambalache/default.nix @@ -83,9 +83,7 @@ python3.pkgs.buildPythonApplication rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/tools/changie/default.nix b/third_party/nixpkgs/pkgs/development/tools/changie/default.nix index b1ebe71d11..0bf4f9be59 100644 --- a/third_party/nixpkgs/pkgs/development/tools/changie/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/changie/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "changie"; - version = "1.10.1"; + version = "1.10.2"; src = fetchFromGitHub { rev = "v${version}"; owner = "miniscruff"; repo = pname; - sha256 = "sha256-c7QEDyxk3Y/niQtVNQiS4OS/nHkldtjEcaXXR7rx/QI="; + sha256 = "sha256-1UUF82sYzZDzlhPD8R8QIfR/Vm/9uUAxHzai+A1FCaQ="; }; - vendorSha256 = "sha256-AoQdOw5Yw54mGmwfozkxtfo3ZhWGUbBoHc3Iqy80x38="; + vendorSha256 = "sha256-oz327wlTrFCj8Hf1wPiND40Ew4kBB/k5doj1us8lhm4="; patches = [ ./skip-flaky-test.patch ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/checkmate/default.nix b/third_party/nixpkgs/pkgs/development/tools/checkmate/default.nix index 3cefae1bff..b14079c749 100644 --- a/third_party/nixpkgs/pkgs/development/tools/checkmate/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/checkmate/default.nix @@ -5,22 +5,23 @@ buildGoModule rec { pname = "checkmate"; - version = "0.8.2"; + version = "0.8.4"; src = fetchFromGitHub { owner = "adedayo"; repo = pname; rev = "v${version}"; - sha256 = "sha256-v9xVJFX3YJQU9z9L7dhy0S1FvpWoDad36Lq3w4VW0xA="; + hash = "sha256-tgiZDTPIAYirPX6nGPEAt6BoYEC8uUJwT6zuHJqPF1w="; }; - vendorSha256 = "sha256-8/EGoY3+th34gAACDoEHgwhUFmyyKecnQP/WTe56iCQ="; + vendorHash = "sha256-eL1fLJwzVpU9NqaAl5R/fbaqI3AnEkl6EuPkMTuY86w="; subPackages = [ "." ]; meta = with lib; { description = "Pluggable code security analysis tool"; homepage = "https://github.com/adedayo/checkmate"; + changelog = "https://github.com/adedayo/checkmate/releases/tag/v${version}"; license = licenses.bsd3; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/circup/default.nix b/third_party/nixpkgs/pkgs/development/tools/circup/default.nix index ccb7ef454a..210f0d8f84 100644 --- a/third_party/nixpkgs/pkgs/development/tools/circup/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/circup/default.nix @@ -5,14 +5,14 @@ python3.pkgs.buildPythonApplication rec { pname = "circup"; - version = "1.1.3"; + version = "1.1.4"; format = "setuptools"; src = fetchFromGitHub { owner = "adafruit"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-BCAsCwQCKMtmjISMVKDblRdev87K4EfX5D2Ot0L5PoQ="; + hash = "sha256-nXDje+MJR6olG3G7RO3esf6UAKynMvCP8YetIhnqoeE="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -46,6 +46,7 @@ python3.pkgs.buildPythonApplication rec { meta = with lib; { description = "CircuitPython library updater"; homepage = "https://github.com/adafruit/circup"; + changelog = "https://github.com/adafruit/circup/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/coder/default.nix b/third_party/nixpkgs/pkgs/development/tools/coder/default.nix index cd82bfd16a..5a28c5bacd 100644 --- a/third_party/nixpkgs/pkgs/development/tools/coder/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/coder/default.nix @@ -5,13 +5,13 @@ }: buildGoModule rec { pname = "coder"; - version = "0.13.2"; + version = "0.13.3"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - hash = "sha256-iuNTp+28tOggK3fgsa7yHmqXKz/zW/o47e5UKNppNWs="; + hash = "sha256-26RvDJ890MclDB4rtYQ7CcB3NQRXC7sI2cXd689Eq6E="; }; # integration tests require network access diff --git a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix index 37b36ff3ed..2a7111b352 100644 --- a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "cirrus-cli"; - version = "0.93.0"; + version = "0.94.4"; src = fetchFromGitHub { owner = "cirruslabs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-exGOCBKPHuVBaFXd+/jbjAid7ZDodtZ/h/OWp/NBOhE="; + sha256 = "sha256-PnO9M3CQQnZotzCuE2rlGsoBzNO0PdsoMLlY3tNyEyk="; }; vendorSha256 = "sha256-gotc9M2UkRJtE4LZPCpqDTXQ/cnN4tk+3HG243tFoss="; diff --git a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/dagger/default.nix b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/dagger/default.nix index 78c93efc2b..a1872d285d 100644 --- a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/dagger/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/dagger/default.nix @@ -1,23 +1,29 @@ -{ lib, buildGoModule, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub, testers, dagger }: buildGoModule rec { pname = "dagger"; - version = "0.2.36"; + version = "0.3.7"; src = fetchFromGitHub { owner = "dagger"; repo = "dagger"; rev = "v${version}"; - sha256 = "sha256-U+MdX/7RIrhnPjUjzYAQEVeHQUpgMtKanvjPLBjCNSY="; + hash = "sha256-67ILrOVG31LrLgMcT+bZyWQ3lSahWOdWRyWpgUYSr4I="; }; - vendorSha256 = "sha256-ArdqEHECnGTMs3sJrPIAfmTT0D2V8SHyTYXmDODVtuo="; + vendorHash = "sha256-bidJ7V/+yU3pBVXMdD4S0QVh9gKcvRN46Ut5OdSrnNc="; + proxyVendor = true; subPackages = [ "cmd/dagger" ]; - ldflags = [ "-s" "-w" "-X go.dagger.io/dagger/version.Version=${version}" ]; + ldflags = [ "-s" "-w" "-X main.version=${version}" ]; + + passthru.tests.version = testers.testVersion { + package = dagger; + command = "dagger version"; + }; meta = with lib; { description = "A portable devkit for CICD pipelines"; diff --git a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/drone-runner-docker/default.nix b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/drone-runner-docker/default.nix index bff410bdc9..649351c28d 100644 --- a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/drone-runner-docker/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/drone-runner-docker/default.nix @@ -2,19 +2,19 @@ buildGoModule rec { pname = "drone-runner-docker"; - version = "1.8.1"; + version = "1.8.2"; src = fetchFromGitHub { owner = "drone-runners"; repo = pname; - rev = "v${version}"; - sha256 = "sha256-3SbvnW+mCwaBCF77rAnDMqZRHX9wDCjXvFGq9w0E5Qw="; + rev = "refs/tags/v${version}"; + sha256 = "sha256-ZpkVfzqeltZSYrKYB6dXtlVjl1uFpQdl2fa+c5ApiW4="; }; - vendorSha256 = "sha256-E18ykjQc1eoHpviYok+NiLaeH01UMQmigl9JDwtR+zo="; + vendorSha256 = "sha256-KcNp3VdJ201oxzF0bLXY4xWHqHNz54ZrVSI96cfhU+k="; meta = with lib; { - maintainers = with maintainers; [ endocrimes ]; + maintainers = with maintainers; [ endocrimes indeednotjames ]; license = licenses.unfreeRedistributable; homepage = "https://github.com/drone-runners/drone-runner-docker"; description = "Drone pipeline runner that executes builds inside Docker containers"; diff --git a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/drone/default.nix b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/drone/default.nix index b120df52f5..9e4dda5475 100644 --- a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/drone/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/drone/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "drone.io${lib.optionalString (!enableUnfree) "-oss"}"; - version = "2.15.0"; + version = "2.16.0"; src = fetchFromGitHub { owner = "harness"; repo = "drone"; rev = "v${version}"; - sha256 = "sha256-2Yu0EFMuAlG6/3YuDKQpiZU5/fBexWJtsrU1MNABSyA="; + sha256 = "sha256-bNvXAcFMPK8C/QN7VTdnicewRfaEtyJ45MhQSTNYp3U="; }; - vendorSha256 = "sha256-ijUHMAcSDnZnhlzaYeD411L3ybRc08ac9jbvDDc2D4M="; + vendorSha256 = "sha256-9EKXMy9g3kTpHer27ouuFDjh7zSEeBcpI8nH1VkMA9M="; tags = lib.optionals (!enableUnfree) [ "oss" "nolimit" ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/github-runner/default.nix b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/github-runner/default.nix index 3a4f0de817..6527f2311d 100644 --- a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/github-runner/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/github-runner/default.nix @@ -28,10 +28,6 @@ let inherit sha256; }; - sdkSource = linkFarmFromDrvs "nuget-sdk-packages" ( - dotnetSdk.passthru.packages { inherit fetchNuGet; } - ); - nugetSource = linkFarmFromDrvs "nuget-packages" ( import ./deps.nix { inherit fetchNuGet; } ); @@ -49,15 +45,13 @@ let in stdenv.mkDerivation rec { pname = "github-runner"; - version = "2.300.0"; - - inherit sdkSource; + version = "2.300.2"; src = fetchFromGitHub { owner = "actions"; repo = "runner"; rev = "v${version}"; - hash = "sha256-pEBudX285qMz0W8Sog0ph2CA5UclBItQ+ixaBi6dl8I="; + hash = "sha256-4TCClrCCHMVtbGAlxmAhZt63nQlMxkaLLZ9EOgurSMA="; }; nativeBuildInputs = [ @@ -124,7 +118,7 @@ stdenv.mkDerivation rec { # Restore the dependencies dotnet restore src/ActionsRunner.sln \ --runtime "${runtimeId}" \ - --source "${sdkSource}" \ + --source "${dotnetSdk.packages}" \ --source "${nugetSource}" runHook postConfigure @@ -325,7 +319,7 @@ stdenv.mkDerivation rec { # Script to create deps.nix file for dotnet dependencies. Run it with # $(nix-build -A github-runner.passthru.createDepsFile)/bin/create-deps-file # - # Default output path is /tmp/${pname}-deps.nix, but can be overriden with cli argument. + # Default output path is /tmp/${pname}-deps.nix, but can be overridden with cli argument. # # Inspired by passthru.fetch-deps in pkgs/build-support/build-dotnet-module/default.nix passthru.createDepsFile = writeShellApplication { @@ -339,6 +333,7 @@ stdenv.mkDerivation rec { printf "\n* Setup workdir\n" workdir="$(mktemp -d /tmp/${pname}.XXX)" + HOME="$workdir"/.fake-home cp -rT "${src}" "$workdir" chmod -R +w "$workdir" trap 'rm -rf "$workdir"' EXIT @@ -353,7 +348,7 @@ stdenv.mkDerivation rec { '') (lib.attrValues runtimeIds)} printf "\n* Make %s file\n" "$(basename "$deps_file")" - nuget-to-nix "$workdir/nuget_pkgs" "${sdkSource}" > "$deps_file" + nuget-to-nix "$workdir/nuget_pkgs" "${dotnetSdk.packages}" > "$deps_file" printf "\n* Dependency file writen to %s" "$deps_file" ''; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix index 2ab40ae599..6d9563f322 100644 --- a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix @@ -1,7 +1,7 @@ { lib, buildGoModule, fetchFromGitLab, fetchurl, bash }: let - version = "15.5.1"; + version = "15.7.1"; in buildGoModule rec { inherit version; @@ -17,13 +17,13 @@ buildGoModule rec { # For patchShebangs buildInputs = [ bash ]; - vendorSha256 = "sha256-IcsYH1V3b5IUY2JqOADJrc4lkng1GS7lndfHObRQbxU="; + vendorSha256 = "sha256-GyhDns10eekU05D7SGbhYYlpK3OIajtUXXOcWgprBPc="; src = fetchFromGitLab { owner = "gitlab-org"; repo = "gitlab-runner"; rev = "v${version}"; - sha256 = "sha256-ZvQaA4DSuEIdHEoRKJg5tOnBQgf26paTAiWy6RLRG3o="; + sha256 = "sha256-YHqezwud+/osCiqeR3QUvANFRU/oR451act+Crh4CRE="; }; patches = [ @@ -46,6 +46,7 @@ buildGoModule rec { rm executors/docker/terminal_test.go rm executors/docker/docker_test.go rm helpers/docker/auth/auth_test.go + rm executors/docker/services_test.go ''; postInstall = '' diff --git a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/gitlab-runner/remove-bash-test.patch b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/gitlab-runner/remove-bash-test.patch index 5bffd0f4f7..6f27ef71c9 100644 --- a/third_party/nixpkgs/pkgs/development/tools/continuous-integration/gitlab-runner/remove-bash-test.patch +++ b/third_party/nixpkgs/pkgs/development/tools/continuous-integration/gitlab-runner/remove-bash-test.patch @@ -1,25 +1,23 @@ diff --git a/shells/bash_test.go b/shells/bash_test.go -index b8a48f85e..0e3173fc3 100644 +index 9ed9e65ff..02b6e6d5f 100644 --- a/shells/bash_test.go +++ b/shells/bash_test.go -@@ -4,12 +4,9 @@ - package shells +@@ -4,11 +4,9 @@ package shells import ( + "path" - "runtime" "testing" "github.com/stretchr/testify/assert" - "github.com/stretchr/testify/require" -- "gitlab.com/gitlab-org/gitlab-runner/common" + "gitlab.com/gitlab-org/gitlab-runner/common" ) - func TestBash_CommandShellEscapesLegacy(t *testing.T) { -@@ -84,62 +81,3 @@ func TestBash_CheckForErrors(t *testing.T) { - }) +@@ -90,65 +88,6 @@ func TestBash_CheckForErrors(t *testing.T) { } } -- + -func TestBash_GetConfiguration(t *testing.T) { - tests := map[string]struct { - info common.ShellScriptInfo @@ -78,3 +76,7 @@ index b8a48f85e..0e3173fc3 100644 - }) - } -} +- + func Test_BashWriter_isTmpFile(t *testing.T) { + tmpDir := "/foo/bar" + bw := BashWriter{TemporaryPath: tmpDir} diff --git a/third_party/nixpkgs/pkgs/development/tools/ctlptl/default.nix b/third_party/nixpkgs/pkgs/development/tools/ctlptl/default.nix index bf49c85088..f4b155da72 100644 --- a/third_party/nixpkgs/pkgs/development/tools/ctlptl/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/ctlptl/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "ctlptl"; - version = "0.8.12"; + version = "0.8.15"; src = fetchFromGitHub { owner = "tilt-dev"; repo = pname; rev = "v${version}"; - sha256 = "sha256-h0JR641+VBiTJY8INXhxwvsyZGLH4YRdkddwo2IUDQk="; + sha256 = "sha256-JCBlP8ESCiqr4pk8QyG5CVs+3qSlnvw0jYS5R0Civk0="; }; vendorSha256 = "sha256-M9B/rfMBjYJb9szmYPVZqURlcv62qHOLJ3ka0v++z0s="; diff --git a/third_party/nixpkgs/pkgs/development/tools/database/clickhouse-backup/default.nix b/third_party/nixpkgs/pkgs/development/tools/database/clickhouse-backup/default.nix index 4db8dbe263..81c53082b7 100644 --- a/third_party/nixpkgs/pkgs/development/tools/database/clickhouse-backup/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/database/clickhouse-backup/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "clickhouse-backup"; - version = "2.1.2"; + version = "2.1.3"; src = fetchFromGitHub { owner = "AlexAkulov"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Vc9zPERRF6AWSOGSiOe6n33Ioc3uOtHQEehfMhPkSFk="; + sha256 = "sha256-RaThNBTRBECSeSeJOQ2UsrkBHjSjrS91vIRF/4MGek4="; }; - vendorSha256 = "sha256-kbIztD0g+92gxxBYhWILudgFRFCshagmAUs8bY/Z8yg="; + vendorSha256 = "sha256-sSN+HAUC9rJc9XMTG8H+Zg7mzZSVxn6Z7dixJ10mOuM="; ldflags = [ "-X main.version=${version}" diff --git a/third_party/nixpkgs/pkgs/development/tools/database/prisma-engines/default.nix b/third_party/nixpkgs/pkgs/development/tools/database/prisma-engines/default.nix index b0a417d1b0..a811426a6d 100644 --- a/third_party/nixpkgs/pkgs/development/tools/database/prisma-engines/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/database/prisma-engines/default.nix @@ -13,19 +13,19 @@ # function correctly. rustPlatform.buildRustPackage rec { pname = "prisma-engines"; - version = "4.7.0"; + version = "4.8.0"; src = fetchFromGitHub { owner = "prisma"; repo = "prisma-engines"; rev = version; - sha256 = "sha256-mpKrCRZQ7CS/Rf2KfpszE2/KACNClHxfrLFJ+iaVhZE="; + sha256 = "sha256-+L8w7FG74V6z9IUfkQHo2B7/vjLhdVHeoVBttgqoUNc="; }; # Use system openssl. OPENSSL_NO_VENDOR = 1; - cargoSha256 = "sha256-NIbOx0xR5qStIfe8TptMqu3Dx6zVl2qBDzr/41ANsrk="; + cargoSha256 = "sha256-CQFTO43/b0ymYtnAtvySrp8cOF7rRdzY8mvcYTiiUp0="; nativeBuildInputs = [ pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/database/sqlfluff/default.nix b/third_party/nixpkgs/pkgs/development/tools/database/sqlfluff/default.nix index 7015050e2d..b93b1ab763 100644 --- a/third_party/nixpkgs/pkgs/development/tools/database/sqlfluff/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/database/sqlfluff/default.nix @@ -5,13 +5,14 @@ python3.pkgs.buildPythonApplication rec { pname = "sqlfluff"; - version = "1.4.2"; + version = "1.4.5"; + format = "setuptools"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-B1tqL8bc+mWEjQrS4lQM55/ahOeUyuE8VBtk6QMj6Mk="; + hash = "sha256-Kc0doBR2iOy54arxOYXH5eHlcM7pXFVUqedopsZH8rE="; }; propagatedBuildInputs = with python3.pkgs; [ @@ -43,9 +44,10 @@ python3.pkgs.buildPythonApplication rec { disabledTestPaths = [ # Don't run the plugin related tests - "test/core/plugin_test.py" - "plugins/sqlfluff-templater-dbt" "plugins/sqlfluff-plugin-example/test/rules/rule_test_cases_test.py" + "plugins/sqlfluff-templater-dbt" + "test/core/plugin_test.py" + "test/diff_quality_plugin_test.py" ]; disabledTests = [ @@ -62,6 +64,7 @@ python3.pkgs.buildPythonApplication rec { meta = with lib; { description = "SQL linter and auto-formatter"; homepage = "https://www.sqlfluff.com/"; + changelog = "https://github.com/sqlfluff/sqlfluff/blob/${version}/CHANGELOG.md"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/database/vitess/default.nix b/third_party/nixpkgs/pkgs/development/tools/database/vitess/default.nix new file mode 100644 index 0000000000..58f87e3b12 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/database/vitess/default.nix @@ -0,0 +1,30 @@ +{ lib, buildGoModule, fetchFromGitHub, sqlite }: + +buildGoModule rec { + pname = "vitess"; + version = "15.0.1"; + + src = fetchFromGitHub { + owner = "vitessio"; + repo = pname; + rev = "v${version}"; + hash = "sha256-na7s39Mn6Kn9+edGu8ThCuYB7ZguDGC4MDsq14bOjME="; + }; + + vendorHash = "sha256-+yCznSxv0EWoKiQIgFEQ/iUxrlQ5A1HYNkoMiRDG3ik="; + + buildInputs = [ sqlite ]; + + subPackages = [ "go/cmd/..." ]; + + # integration tests require access to syslog and root + doCheck = false; + + meta = with lib; { + homepage = "https://vitess.io/"; + changelog = "https://github.com/vitessio/vitess/releases/tag/v${version}"; + description = "A database clustering system for horizontal scaling of MySQL"; + license = licenses.asl20; + maintainers = with maintainers; [ urandom ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/tools/deadnix/default.nix b/third_party/nixpkgs/pkgs/development/tools/deadnix/default.nix index 471f29b2f0..00d51cb94f 100644 --- a/third_party/nixpkgs/pkgs/development/tools/deadnix/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/deadnix/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "deadnix"; - version = "0.1.8"; + version = "1.0.0"; src = fetchFromGitHub { owner = "astro"; repo = "deadnix"; rev = "v${version}"; - sha256 = "sha256-4IK+vv3R3UzF5anH1swypPIzXXZmTCJ2kS2eGUcYvLk="; + sha256 = "sha256-T8VwxHdy5KI2Kob5wYWGQOGYYJeSfWVPygIOe0PYUMY="; }; - cargoSha256 = "sha256-GmvSrU7wDOKc22GU43oFJoYCYiVKQ5Oe6qrLQXLtcyM="; + cargoSha256 = "sha256-0pe1zOHoNoAhCb0t8BnL7XewyoqOzVL5w3MTY8pUkUY="; meta = with lib; { description = "Find and remove unused code in .nix source files"; diff --git a/third_party/nixpkgs/pkgs/development/tools/devbox/default.nix b/third_party/nixpkgs/pkgs/development/tools/devbox/default.nix index f2a82621dd..ea24dfe5fc 100644 --- a/third_party/nixpkgs/pkgs/development/tools/devbox/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/devbox/default.nix @@ -5,25 +5,25 @@ }: buildGoModule rec { pname = "devbox"; - version = "0.1.2"; + version = "0.2.0"; src = fetchFromGitHub { owner = "jetpack-io"; repo = pname; rev = version; - hash = "sha256-AUZPMNGhYimoqcFNeYg5lj3NGDnna5XE4plC9eEDVXg="; + hash = "sha256-zfNVx3u4MtpVzxTK1yvLvPJcHUGcCFwZlGL0rZeCt4M="; }; ldflags = [ "-s" "-w" - "-X go.jetpack.io/devbox/build.Version=${version}" + "-X go.jetpack.io/devbox/internal/build.Version=${version}" ]; # integration tests want file system access doCheck = false; - vendorHash = "sha256-tnQCRrpOI1qgsouI7pLO4gLTDwEiHZV1KeNSy07wS4o="; + vendorHash = "sha256-KQu1Ik15YR3R+taqOJI9jUlGiVJDkVhytxPTl4sCQOk="; nativeBuildInputs = [ installShellFiles ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/doctl/default.nix b/third_party/nixpkgs/pkgs/development/tools/doctl/default.nix index 1a94a3791d..3c87fe5d01 100644 --- a/third_party/nixpkgs/pkgs/development/tools/doctl/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/doctl/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "doctl"; - version = "1.90.0"; + version = "1.91.0"; vendorSha256 = null; @@ -31,7 +31,7 @@ buildGoModule rec { owner = "digitalocean"; repo = "doctl"; rev = "v${version}"; - sha256 = "sha256-b6Tj1A2kF5dZ/dPSGAq9Bd0PB7zQ61RIKTKhFv422tw="; + sha256 = "sha256-hX9doUNxqkJujts9yYNvGSTq3nkaan1HqTHZBcO1hCs="; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/tools/electron/default.nix b/third_party/nixpkgs/pkgs/development/tools/electron/default.nix index c197aa8b9e..5c0838fce7 100644 --- a/third_party/nixpkgs/pkgs/development/tools/electron/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/electron/default.nix @@ -16,6 +16,7 @@ , libappindicator-gtk3 , libxshmfence , libglvnd +, wayland }@args: let diff --git a/third_party/nixpkgs/pkgs/development/tools/electron/generic.nix b/third_party/nixpkgs/pkgs/development/tools/electron/generic.nix index 8c64b86b43..76f2bc4275 100644 --- a/third_party/nixpkgs/pkgs/development/tools/electron/generic.nix +++ b/third_party/nixpkgs/pkgs/development/tools/electron/generic.nix @@ -16,6 +16,7 @@ , libappindicator-gtk3 , libxshmfence , libglvnd +, wayland }: version: hashes: @@ -64,7 +65,7 @@ let }; electronLibPath = with lib; makeLibraryPath ( - [ libuuid at-spi2-atk at-spi2-core libappindicator-gtk3 ] + [ libuuid at-spi2-atk at-spi2-core libappindicator-gtk3 wayland ] ++ optionals (versionAtLeast version "9.0.0") [ libdrm mesa ] ++ optionals (versionOlder version "10.0.0") [ libXScrnSaver ] ++ optionals (versionAtLeast version "11.0.0") [ libxkbcommon ] diff --git a/third_party/nixpkgs/pkgs/development/tools/fq/default.nix b/third_party/nixpkgs/pkgs/development/tools/fq/default.nix index 293e165082..2145a3ab74 100644 --- a/third_party/nixpkgs/pkgs/development/tools/fq/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/fq/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "fq"; - version = "0.1.0"; + version = "0.2.0"; src = fetchFromGitHub { owner = "wader"; repo = "fq"; rev = "v${version}"; - sha256 = "sha256-ZUbeAZGHG7I4NwJZjI92isIMX8M675oI833v3uKZE7U="; + sha256 = "sha256-OAdKt5RgLVoTmccN50TUwUAU7VLiTU9hEnDAKxKBRzI="; }; - vendorSha256 = "sha256-GGbKoLj8CyfqB90QnOsomZBVd6KwJCTp/MeyKvRopSQ="; + vendorSha256 = "sha256-Y9wfeAX0jt3KrpRa5kJi8V8WN/hp4jTcPCbvy0RDGRk="; ldflags = [ "-s" diff --git a/third_party/nixpkgs/pkgs/development/tools/gnome-desktop-testing/default.nix b/third_party/nixpkgs/pkgs/development/tools/gnome-desktop-testing/default.nix index 5531823b8f..51f6eae6f3 100644 --- a/third_party/nixpkgs/pkgs/development/tools/gnome-desktop-testing/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/gnome-desktop-testing/default.nix @@ -33,9 +33,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; passthru = { - updateScript = nix-update-script { - attrPath = "gnome-desktop-testing"; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/tools/go-swag/default.nix b/third_party/nixpkgs/pkgs/development/tools/go-swag/default.nix index 49ffef19f7..0417f8d567 100644 --- a/third_party/nixpkgs/pkgs/development/tools/go-swag/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/go-swag/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "go-swag"; - version = "1.8.8"; + version = "1.8.9"; src = fetchFromGitHub { owner = "swaggo"; repo = "swag"; rev = "v${version}"; - sha256 = "sha256-xERuD15NEmBqosNAUmWEGqWVXc9jLA9HrbZrqmzhLFA="; + sha256 = "sha256-8UnDrWZ0gQlhPQLDqA5DLBBeHqQFlNxK7+y4qlUk/fI="; }; vendorSha256 = "sha256-iu4rSgB7Gu5n1Sgu0jU9QwdwvuZ5rAqysvKuBnJd2jQ="; diff --git a/third_party/nixpkgs/pkgs/development/tools/goda/default.nix b/third_party/nixpkgs/pkgs/development/tools/goda/default.nix index c1932d18c3..e2bddfb5dd 100644 --- a/third_party/nixpkgs/pkgs/development/tools/goda/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/goda/default.nix @@ -13,9 +13,7 @@ buildGoModule rec { vendorSha256 = "sha256-BYYuB4ZlCWD8NILkf4qrgM4q72ZTy7Ze3ICUXdoI5Ms="; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { homepage = "https://github.com/loov/goda"; diff --git a/third_party/nixpkgs/pkgs/development/tools/gojq/default.nix b/third_party/nixpkgs/pkgs/development/tools/gojq/default.nix index b70801d022..177d838ff0 100644 --- a/third_party/nixpkgs/pkgs/development/tools/gojq/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/gojq/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "gojq"; - version = "0.12.10"; + version = "0.12.11"; src = fetchFromGitHub { owner = "itchyny"; repo = pname; rev = "v${version}"; - sha256 = "sha256-JlxxfazVNJzQzG2p8L+5MoevSNNWf5mi14n3f/Q+MZU="; + sha256 = "sha256-xJx3ge+8cIGL1j5vnU4JhCcwmXIRhJ66PYnEG223Fbc="; }; vendorSha256 = "sha256-BnDtHqqU/kFJyeG1g4UZ51eSnUlbQ6eRKTFoz6kxl0s="; diff --git a/third_party/nixpkgs/pkgs/development/tools/grpc-gateway/default.nix b/third_party/nixpkgs/pkgs/development/tools/grpc-gateway/default.nix index 3870e87dcb..54e6ccd471 100644 --- a/third_party/nixpkgs/pkgs/development/tools/grpc-gateway/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/grpc-gateway/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "grpc-gateway"; - version = "2.14.0"; + version = "2.15.0"; src = fetchFromGitHub { owner = "grpc-ecosystem"; repo = "grpc-gateway"; rev = "v${version}"; - sha256 = "sha256-lnNdsDCpeSHtl2lC1IhUw11t3cnGF+37qSM7HDvKLls="; + sha256 = "sha256-NOcV3XrSFeb/LYzeZQ0M1l1l4TkC+fVqAXCDUTaMN3c="; }; - vendorSha256 = "sha256-dGdnDuRbwg8fU7uB5GaHEWa/zI3w06onqjturvooJQA="; + vendorSha256 = "sha256-zYKRWJ09SnE0Y9iahTyODas/04an8x9w+rsY0x4/NRM="; meta = with lib; { description = diff --git a/third_party/nixpkgs/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix b/third_party/nixpkgs/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix index e7ba49fa68..48a473be16 100644 --- a/third_party/nixpkgs/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix +++ b/third_party/nixpkgs/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix @@ -1,6 +1,6 @@ { lib , stdenv -, supportedGhcVersions ? [ "90" ] +, supportedGhcVersions ? [ "92" ] , dynamic ? true , haskellPackages , haskell @@ -40,23 +40,21 @@ let "ln -s ${ tunedHls (getPackages version) }/bin/haskell-language-server $out/bin/${x}") (targets version); - pkg = tunedHls haskellPackages; -in stdenv.mkDerivation { +in assert supportedGhcVersions != []; stdenv.mkDerivation { pname = "haskell-language-server"; version = haskellPackages.haskell-language-server.version; buildCommand = '' mkdir -p $out/bin - ln -s ${pkg}/bin/haskell-language-server $out/bin/haskell-language-server - ln -s ${pkg}/bin/haskell-language-server-wrapper $out/bin/haskell-language-server-wrapper + ln -s ${tunedHls (getPackages (builtins.head supportedGhcVersions))}/bin/haskell-language-server-wrapper $out/bin/haskell-language-server-wrapper ${concatMapStringsSep "\n" makeSymlinks supportedGhcVersions} ''; meta = haskellPackages.haskell-language-server.meta // { maintainers = [ lib.maintainers.maralorn ]; longDescription = '' - This package provides haskell-language-server, haskell-language-server-wrapper, ${ + This package provides the executables ${ concatMapStringsSep ", " (x: concatStringsSep ", " (targets x)) supportedGhcVersions - }. + } and haskell-language-server-wrapper. You can choose for which ghc versions to install hls with pkgs.haskell-language-server.override { supportedGhcVersions = [ "90" "92" ]; }. ''; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/haskell/vaultenv/default.nix b/third_party/nixpkgs/pkgs/development/tools/haskell/vaultenv/default.nix index 4f51c8238c..b0810d33b5 100644 --- a/third_party/nixpkgs/pkgs/development/tools/haskell/vaultenv/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/haskell/vaultenv/default.nix @@ -96,4 +96,8 @@ mkDerivation rec { description = "Runs processes with secrets from HashiCorp Vault"; license = lib.licenses.bsd3; maintainers = with lib.maintainers; [ lnl7 manveru ]; + + # Does not compile on ghc92 + hydraPlatforms = lib.platforms.none; + broken = true; } diff --git a/third_party/nixpkgs/pkgs/development/tools/jira-cli-go/default.nix b/third_party/nixpkgs/pkgs/development/tools/jira-cli-go/default.nix index fe5d8cf9ea..f337fbf9d3 100644 --- a/third_party/nixpkgs/pkgs/development/tools/jira-cli-go/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/jira-cli-go/default.nix @@ -1,14 +1,14 @@ -{ lib, buildGoModule, fetchFromGitHub, less, more, installShellFiles, testers, jira-cli-go }: +{ lib, buildGoModule, fetchFromGitHub, less, more, installShellFiles, testers, jira-cli-go, nix-update-script }: buildGoModule rec { pname = "jira-cli-go"; - version = "1.1.0"; + version = "1.2.0"; src = fetchFromGitHub { owner = "ankitpokhrel"; repo = "jira-cli"; rev = "v${version}"; - sha256 = "sha256-UpDaKg6TA1qCkbzF7BARtj+tAyuCCGAyqOdItZU64Ls="; + hash = "sha256-ruFSqD/QLIK69hx9lNulWjyXVJzGACmghAU4fFEgEJo="; }; vendorSha256 = "sha256-SpUggA9u8OGV2zF3EQ0CB8M6jpiVQi957UGaN+foEuk="; @@ -22,10 +22,13 @@ buildGoModule rec { checkInputs = [ less more ]; # Tests expect a pager in $PATH - passthru.tests.version = testers.testVersion { - package = jira-cli-go; - command = "jira version"; - inherit version; + passthru = { + tests.version = testers.testVersion { + package = jira-cli-go; + command = "jira version"; + inherit version; + }; + updateScript = nix-update-script { }; }; nativeBuildInputs = [ installShellFiles ]; @@ -41,6 +44,7 @@ buildGoModule rec { meta = with lib; { description = "Feature-rich interactive Jira command line"; homepage = "https://github.com/ankitpokhrel/jira-cli"; + changelog = "https://github.com/ankitpokhrel/jira-cli/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ bryanasdev000 anthonyroussel ]; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/jql/default.nix b/third_party/nixpkgs/pkgs/development/tools/jql/default.nix index d7d65a4eda..071f944a82 100644 --- a/third_party/nixpkgs/pkgs/development/tools/jql/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/jql/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "jql"; - version = "5.1.3"; + version = "5.1.4"; src = fetchFromGitHub { owner = "yamafaktory"; repo = pname; rev = "v${version}"; - sha256 = "sha256-xCtTa2CLLhdflcjjqxiOgRRuxlIHhcHo8gsdLMVuxvQ="; + sha256 = "sha256-D6Y3I5UPChdLlTZ49iToQpE8CrHh3VjWV6PI7fRhU/A="; }; - cargoSha256 = "sha256-yB9PemmX69bDkLTasroX3tTNzd13o7mu/fdSptsEMgM="; + cargoSha256 = "sha256-GqfQD8NK/HYODEGUmfo+MMVsWg2CabZFLfBTp4UXV2Q="; meta = with lib; { description = "A JSON Query Language CLI tool built with Rust"; diff --git a/third_party/nixpkgs/pkgs/development/tools/k6/default.nix b/third_party/nixpkgs/pkgs/development/tools/k6/default.nix index 62f9be1257..82255b249e 100644 --- a/third_party/nixpkgs/pkgs/development/tools/k6/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/k6/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "k6"; - version = "0.41.0"; + version = "0.42.0"; src = fetchFromGitHub { owner = "grafana"; repo = pname; rev = "v${version}"; - sha256 = "sha256-kMWheOf6lR2Fdb77NvjQYB/PHILs6ZIfQORh72ojc8c="; + sha256 = "sha256-DlB1oTE5RkxSyNupZ2U+dmr7qNPq8xJU3R0pAjm5EFQ="; }; subPackages = [ "./" ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/karate/default.nix b/third_party/nixpkgs/pkgs/development/tools/karate/default.nix index cda508c9df..a374a4590f 100644 --- a/third_party/nixpkgs/pkgs/development/tools/karate/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/karate/default.nix @@ -2,11 +2,11 @@ stdenvNoCC.mkDerivation rec { pname = "karate"; - version = "1.3.0"; + version = "1.3.1"; src = fetchurl { url = "https://github.com/karatelabs/karate/releases/download/v${version}/karate-${version}.jar"; - sha256 = "sha256-uQHE8Mf70t7gtALdxO1tltUkwEKx0emWWliZEzwGW+Q="; + sha256 = "sha256-d0MIiMxENBPFM0Kv8vhtn/je1i650Z7+6PoV6ZZCsFY="; }; dontUnpack = true; diff --git a/third_party/nixpkgs/pkgs/development/tools/kdash/default.nix b/third_party/nixpkgs/pkgs/development/tools/kdash/default.nix index 37e3350890..ac230c1d4a 100644 --- a/third_party/nixpkgs/pkgs/development/tools/kdash/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/kdash/default.nix @@ -12,13 +12,13 @@ rustPlatform.buildRustPackage rec { pname = "kdash"; - version = "0.3.5"; + version = "0.3.6"; src = fetchFromGitHub { owner = "kdash-rs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-hh/Q3wUsA6HM0PwMlSfWx9LX+h/Y9w/fXm4HMYXexZU="; + sha256 = "sha256-dXkYHRB0VZ3FGe1Zu78ZzocaVV4zSGzxRMC0WOHiZrE="; }; nativeBuildInputs = [ perl python3 pkg-config ]; @@ -26,7 +26,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl xorg.xcbutil ] ++ lib.optional stdenv.isDarwin AppKit; - cargoSha256 = "sha256-02AfMbR8TsIqEhkXAnslnxgO/XkyEuCW1IyBtrk1dDA="; + cargoSha256 = "sha256-LWGoWFPZsTYa1hQnv1eNNmCKZsiLredvD6+kWanVEK0="; meta = with lib; { description = "A simple and fast dashboard for Kubernetes"; diff --git a/third_party/nixpkgs/pkgs/development/tools/ktlint/default.nix b/third_party/nixpkgs/pkgs/development/tools/ktlint/default.nix index 9246fb9b8a..e80e4c8b4d 100644 --- a/third_party/nixpkgs/pkgs/development/tools/ktlint/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/ktlint/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "ktlint"; - version = "0.47.1"; + version = "0.48.0"; src = fetchurl { url = "https://github.com/pinterest/ktlint/releases/download/${version}/ktlint"; - sha256 = "sha256-ozOtAXI2mlzZc66oPgLotpjAai2qxvMpJdoDBJqj3Oc="; + sha256 = "0sdmfdmxgks9bbzg8nn1gdx55g7qiwpdxkx6p9lwa71mdfc14r2z"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/ansible-language-server/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/ansible-language-server/default.nix similarity index 82% rename from third_party/nixpkgs/pkgs/development/tools/ansible-language-server/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/ansible-language-server/default.nix index 8d9b1f0ca5..ca656cf25b 100644 --- a/third_party/nixpkgs/pkgs/development/tools/ansible-language-server/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/language-servers/ansible-language-server/default.nix @@ -6,16 +6,16 @@ buildNpmPackage rec { pname = "ansible-language-server"; - version = "1.0.2-next.0"; + version = "1.0.3"; src = fetchFromGitHub { owner = "ansible"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-E4xWwqXl5n/eChJ8JM32K2gTYE/F8Y76J3Sll++48Uo="; + hash = "sha256-+42fZ4ILUHg/KcnllUaFYYPBKHxauagbsVdIY1MgwSI="; }; - npmDepsHash = "sha256-8FP6hF85w1Zbhiwi2V350ZWFAykAfvsXRGL8bvGk1XE="; + npmDepsHash = "sha256-DRXIbIogMeiJvZOB44hKkkfc3dg8mscnV6k2rUvYCNs="; npmBuildScript = "compile"; # We remove the prepare and prepack scripts because they run the @@ -30,9 +30,7 @@ buildNpmPackage rec { sed -i '/"prepack"/d' package.json ''; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { changelog = "https://github.com/ansible/ansible-language-server/releases/tag/v${version}"; diff --git a/third_party/nixpkgs/pkgs/development/tools/beancount-language-server/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/beancount-language-server/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/beancount-language-server/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/beancount-language-server/default.nix diff --git a/third_party/nixpkgs/pkgs/development/tools/buf-language-server/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/buf-language-server/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/buf-language-server/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/buf-language-server/default.nix diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/ccls/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/ccls/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/misc/ccls/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/ccls/default.nix diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/ccls/wrapper b/third_party/nixpkgs/pkgs/development/tools/language-servers/ccls/wrapper similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/misc/ccls/wrapper rename to third_party/nixpkgs/pkgs/development/tools/language-servers/ccls/wrapper diff --git a/third_party/nixpkgs/pkgs/development/tools/language-servers/fortls/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/fortls/default.nix new file mode 100644 index 0000000000..9aed276a63 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/language-servers/fortls/default.nix @@ -0,0 +1,35 @@ +{ buildPythonApplication +, lib +, fetchFromGitHub +, setuptools-scm +, json5 +, packaging +}: + +buildPythonApplication rec { + pname = "fortls"; + version = "2.13.0"; + + src = fetchFromGitHub { + owner = "fortran-lang"; + repo = pname; + rev = "v${version}"; + hash = "sha256-kFk2Dlnb0FXM3Ysvsy+g2AAMgpWmwzxuyJPovDm/FJU="; + }; + + nativeBuildInputs = [ setuptools-scm ]; + + propagatedBuildInputs = [ json5 packaging ]; + + preBuild = "export SETUPTOOLS_SCM_PRETEND_VERSION=${version}"; + + doCheck = true; + checkPhase = "$out/bin/fortls --help 1>/dev/null"; + + meta = with lib; { + description = "Fortran Language Server "; + homepage = "https://github.com/fortran-lang/fortls"; + license = [ licenses.mit ]; + maintainers = [ maintainers.sheepforce ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/tools/fortran-language-server/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/fortran-language-server/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/fortran-language-server/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/fortran-language-server/default.nix diff --git a/third_party/nixpkgs/pkgs/development/tools/gopls/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/gopls/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/gopls/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/gopls/default.nix diff --git a/third_party/nixpkgs/pkgs/development/tools/jdt-language-server/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/jdt-language-server/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/jdt-language-server/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/jdt-language-server/default.nix diff --git a/third_party/nixpkgs/pkgs/development/tools/jsonnet-language-server/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/jsonnet-language-server/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/jsonnet-language-server/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/jsonnet-language-server/default.nix diff --git a/third_party/nixpkgs/pkgs/development/tools/kotlin-language-server/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/kotlin-language-server/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/kotlin-language-server/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/kotlin-language-server/default.nix diff --git a/third_party/nixpkgs/pkgs/development/tools/metals/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/metals/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/metals/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/metals/default.nix diff --git a/third_party/nixpkgs/pkgs/development/tools/millet/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/millet/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/millet/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/millet/default.nix diff --git a/third_party/nixpkgs/pkgs/development/tools/nil/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/nil/default.nix similarity index 90% rename from third_party/nixpkgs/pkgs/development/tools/nil/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/nil/default.nix index de87838105..2f43443622 100644 --- a/third_party/nixpkgs/pkgs/development/tools/nil/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/language-servers/nil/default.nix @@ -20,9 +20,7 @@ rustPlatform.buildRustPackage rec { (lib.getBin nix) ]; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "Yet another language server for Nix"; diff --git a/third_party/nixpkgs/pkgs/development/tools/rnix-lsp/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/rnix-lsp/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/rnix-lsp/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/rnix-lsp/default.nix diff --git a/third_party/nixpkgs/pkgs/development/tools/sumneko-lua-language-server/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/sumneko-lua-language-server/default.nix similarity index 96% rename from third_party/nixpkgs/pkgs/development/tools/sumneko-lua-language-server/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/sumneko-lua-language-server/default.nix index d2baf6c0ba..bd9e704eef 100644 --- a/third_party/nixpkgs/pkgs/development/tools/sumneko-lua-language-server/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/language-servers/sumneko-lua-language-server/default.nix @@ -4,13 +4,13 @@ let in stdenv.mkDerivation rec { pname = "sumneko-lua-language-server"; - version = "3.6.3"; + version = "3.6.4"; src = fetchFromGitHub { owner = "sumneko"; repo = "lua-language-server"; rev = version; - sha256 = "sha256-E9Wpdf9V6MltdFncVuDhwxtsLS8mese35HLi7kV1eXI="; + sha256 = "sha256-46Fni1SWsbYnPdntgq6mgqkZ8DCKXGBhTBzSAD2EG5M="; fetchSubmodules = true; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/svls/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/svls/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/misc/svls/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/svls/default.nix diff --git a/third_party/nixpkgs/pkgs/development/tools/vala-language-server/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/vala-language-server/default.nix similarity index 94% rename from third_party/nixpkgs/pkgs/development/tools/vala-language-server/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/vala-language-server/default.nix index 52e33fee6b..6c7ebabe63 100644 --- a/third_party/nixpkgs/pkgs/development/tools/vala-language-server/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/language-servers/vala-language-server/default.nix @@ -36,9 +36,7 @@ stdenv.mkDerivation rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/development/tools/verible/default.nix b/third_party/nixpkgs/pkgs/development/tools/language-servers/verible/default.nix similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/verible/default.nix rename to third_party/nixpkgs/pkgs/development/tools/language-servers/verible/default.nix diff --git a/third_party/nixpkgs/pkgs/development/tools/verible/remove-unused-deps.patch b/third_party/nixpkgs/pkgs/development/tools/language-servers/verible/remove-unused-deps.patch similarity index 100% rename from third_party/nixpkgs/pkgs/development/tools/verible/remove-unused-deps.patch rename to third_party/nixpkgs/pkgs/development/tools/language-servers/verible/remove-unused-deps.patch diff --git a/third_party/nixpkgs/pkgs/development/tools/legitify/default.nix b/third_party/nixpkgs/pkgs/development/tools/legitify/default.nix index ab808fcc61..8a6e9387fe 100644 --- a/third_party/nixpkgs/pkgs/development/tools/legitify/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/legitify/default.nix @@ -25,6 +25,7 @@ buildGoModule rec { meta = with lib; { description = "Tool to detect and remediate misconfigurations and security risks of GitHub assets"; homepage = "https://github.com/Legit-Labs/legitify"; + changelog = "https://github.com/Legit-Labs/legitify/releases/tag/v${version}"; license = licenses.asl20; maintainers = with maintainers; [ fab ]; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/luaformatter/default.nix b/third_party/nixpkgs/pkgs/development/tools/luaformatter/default.nix index 00d96a687a..b2d719267a 100644 --- a/third_party/nixpkgs/pkgs/development/tools/luaformatter/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/luaformatter/default.nix @@ -1,4 +1,8 @@ -{ lib, stdenv, fetchFromGitHub, substituteAll, antlr4, libargs, catch2, cmake, libyamlcpp }: +{ lib, stdenv, fetchFromGitHub, substituteAll, antlr4_9, libargs, catch2, cmake, libyamlcpp }: + +let + antlr4 = antlr4_9; +in stdenv.mkDerivation rec { pname = "luaformatter"; diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/binutils/2.38/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/binutils/2.38/default.nix index 820f667bf9..9fb0a35dbf 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/binutils/2.38/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/binutils/2.38/default.nix @@ -171,7 +171,7 @@ stdenv.mkDerivation { # Turn on --enable-new-dtags by default to make the linker set # RUNPATH instead of RPATH on binaries. This is important because - # RUNPATH can be overriden using LD_LIBRARY_PATH at runtime. + # RUNPATH can be overridden using LD_LIBRARY_PATH at runtime. "--enable-new-dtags" # force target prefix. Some versions of binutils will make it empty if diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/binutils/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/binutils/default.nix index 85d52030ea..c1c7da5744 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/binutils/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/binutils/default.nix @@ -167,7 +167,7 @@ stdenv.mkDerivation { # Turn on --enable-new-dtags by default to make the linker set # RUNPATH instead of RPATH on binaries. This is important because - # RUNPATH can be overriden using LD_LIBRARY_PATH at runtime. + # RUNPATH can be overridden using LD_LIBRARY_PATH at runtime. "--enable-new-dtags" # force target prefix. Some versions of binutils will make it empty if diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/ccache/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/ccache/default.nix index 6462e77cd6..2b24582d70 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/ccache/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/ccache/default.nix @@ -110,9 +110,7 @@ let ccache = stdenv.mkDerivation rec { }; }; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "Compiler cache for fast recompilation of C/C++ code"; diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/circleci-cli/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/circleci-cli/default.nix index c4e0a47257..29be3fe3ed 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/circleci-cli/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/circleci-cli/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "circleci-cli"; - version = "0.1.22770"; + version = "0.1.22924"; src = fetchFromGitHub { owner = "CircleCI-Public"; repo = pname; rev = "v${version}"; - sha256 = "sha256-3IQSI2cG+wEH7IgV8nEWvQRdfsSap8wQCniMWL/khOg="; + sha256 = "sha256-zfkvSfwjh3HUE0aKvBLQuNnT+GBWCOWM+mwrAdZUJ9U="; }; - vendorSha256 = "sha256-tTG2i6ZEck0arKfCiFK7pGg9SE4n7FrF16US67Wj1gY="; + vendorSha256 = "sha256-qnn55C9ZK80gd/ZOtPvAGNJs0d96KqwruU4bZD6TQzY="; nativeBuildInputs = [ installShellFiles ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/cvise/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/cvise/default.nix index ae0846f479..3dc84ad599 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/cvise/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/cvise/default.nix @@ -16,14 +16,14 @@ buildPythonApplication rec { pname = "cvise"; - version = "2.6.0"; + version = "2.7.0"; format = "other"; src = fetchFromGitHub { owner = "marxin"; repo = "cvise"; rev = "refs/tags/v${version}"; - sha256 = "sha256-yREdWrGiH8Bb2bIxvlg4okGbkIM5XqC039Fj0rrsJos="; + sha256 = "sha256-j4s1xH0vO+/NNafQf1Jei7fgebSQ53WJKA+kYxuG2zQ="; }; patches = [ diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/devspace/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/devspace/default.nix index fe831c2eb9..183175ecb3 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/devspace/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/devspace/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "devspace"; - version = "6.2.1"; + version = "6.2.2"; src = fetchFromGitHub { owner = "loft-sh"; repo = "devspace"; rev = "v${version}"; - sha256 = "sha256-V/LaK4pzML5tYaT5YBMsYgzGzsoJ6tkAOo2mGlEkJWQ="; + sha256 = "sha256-eET7Q0UvpvmPPgnrc6tX69dYhrsO2bsyzFkAJyp9FLg="; }; vendorSha256 = null; diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/dura/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/dura/default.nix index ab88298f45..eba3f16c36 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/dura/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/dura/default.nix @@ -30,7 +30,7 @@ rustPlatform.buildRustPackage rec { ]; meta = with lib; { - description = "A background process that saves uncommited changes on git"; + description = "A background process that saves uncommitted changes on git"; longDescription = '' Dura is a background process that watches your Git repositories and commits your uncommitted changes without impacting HEAD, the current diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/highlight-assertions/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/highlight-assertions/default.nix new file mode 100644 index 0000000000..8d2aabe4bf --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/misc/highlight-assertions/default.nix @@ -0,0 +1,25 @@ +{ lib, rustPlatform, fetchFromGitHub }: + +rustPlatform.buildRustPackage rec { + pname = "highlight-assertions"; + version = "unstable-2022-11-24"; + + src = fetchFromGitHub { + owner = "thehamsta"; + repo = pname; + rev = "c738a51513285ded4fc16d68afcdb77761543f92"; + sha256 = "sha256-vYXr0xFwRUwSEP++834A/4M1QB14Wx+qWwB9PUtn3uA="; + }; + + cargoSha256 = "sha256-sezjd7tmVVDoRsrsTK2zKjHmrBcAQDHyHd/dR1q1za0="; + + # requires nightly features + RUSTC_BOOTSTRAP = 1; + + meta = with lib; { + description = "A tool for unit testing tree sitter highlights for nvim-treesitter"; + homepage = "https://github.com/thehamsta/highlight-assertions"; + license = licenses.asl20; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/hydra/unstable.nix b/third_party/nixpkgs/pkgs/development/tools/misc/hydra/unstable.nix index 3afc807b07..17ed1328d0 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/hydra/unstable.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/hydra/unstable.nix @@ -126,35 +126,34 @@ let in stdenv.mkDerivation rec { pname = "hydra"; - version = "2022-11-24"; + version = "unstable-2022-12-05"; src = fetchFromGitHub { owner = "NixOS"; repo = "hydra"; - rev = "14d4624dc20956ec9ff54882e70c5c0bc377921a"; - sha256 = "sha256-xY3CDFjLG3po2tdaTZToqZmLCQnSwsUqAn8sIXFrybw="; + rev = "d1fac69c213002721971cd983e2576b784677d40"; + sha256 = "sha256-HVsp+BPjEDS1lR7sjplWNrNljHvYcaUiaAn8gGNAMxU="; }; - buildInputs = - [ - libpqxx - top-git - mercurial - darcs - subversion - breezy - openssl - bzip2 - libxslt - nix - perlDeps - perl - pixz - boost - postgresql - nlohmann_json - prometheus-cpp - ]; + buildInputs = [ + libpqxx + top-git + mercurial + darcs + subversion + breezy + openssl + bzip2 + libxslt + nix + perlDeps + perl + pixz + boost + postgresql + nlohmann_json + prometheus-cpp + ]; hydraPath = lib.makeBinPath ( [ diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/inotify-tools/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/inotify-tools/default.nix index 8c5671605d..d4e049f1d4 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/inotify-tools/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/inotify-tools/default.nix @@ -14,9 +14,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ autoreconfHook ]; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/luarocks/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/luarocks/default.nix index da61e1f8a4..581b4eaeb8 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/luarocks/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/luarocks/default.nix @@ -104,9 +104,7 @@ stdenv.mkDerivation (self: { ]; passthru = { - updateScript = nix-update-script { - attrPath = self.pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/netcoredbg/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/netcoredbg/default.nix index d736e4a1d2..6ea15d74d8 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/netcoredbg/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/netcoredbg/default.nix @@ -64,6 +64,10 @@ stdenvNoCC.mkDerivation { ln -s $out/share/netcoredbg/netcoredbg $out/bin/netcoredbg ''; + passthru = { + inherit (managed) fetch-deps; + }; + meta = with lib; { description = "Managed code debugger with MI interface for CoreCLR"; homepage = "https://github.com/Samsung/netcoredbg"; diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/netcoredbg/deps.nix b/third_party/nixpkgs/pkgs/development/tools/misc/netcoredbg/deps.nix index 8285009fc2..8d311ab7f8 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/netcoredbg/deps.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/netcoredbg/deps.nix @@ -1,3 +1,6 @@ +# This file was automatically generated by passthru.fetch-deps. +# Please dont edit it manually, your changes might get overwritten! + { fetchNuGet }: [ (fetchNuGet { pname = "Microsoft.CodeAnalysis.Analyzers"; version = "1.1.0"; sha256 = "08r667hj2259wbim1p3al5qxkshydykmb7nd9ygbjlg4mmydkapc"; }) (fetchNuGet { pname = "Microsoft.CodeAnalysis.Common"; version = "2.3.0"; sha256 = "1p29v4499qpyh7k7fv1li2y3c688zg95ic8gq9if1nqmjciz5w7p"; }) @@ -8,6 +11,22 @@ (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.1.0"; sha256 = "193xwf33fbm0ni3idxzbr5fdq3i2dlfgihsac9jj7whj0gd902nh"; }) (fetchNuGet { pname = "NETStandard.Library"; version = "2.0.3"; sha256 = "1fn9fxppfcg4jgypp2pmrpr6awl3qz1xmnri0cygpkwvyx27df1y"; }) + (fetchNuGet { pname = "runtime.any.System.Collections"; version = "4.3.0"; sha256 = "0bv5qgm6vr47ynxqbnkc7i797fdi8gbjjxii173syrx14nmrkwg0"; }) + (fetchNuGet { pname = "runtime.any.System.Diagnostics.Tools"; version = "4.3.0"; sha256 = "1wl76vk12zhdh66vmagni66h5xbhgqq7zkdpgw21jhxhvlbcl8pk"; }) + (fetchNuGet { pname = "runtime.any.System.Diagnostics.Tracing"; version = "4.3.0"; sha256 = "00j6nv2xgmd3bi347k00m7wr542wjlig53rmj28pmw7ddcn97jbn"; }) + (fetchNuGet { pname = "runtime.any.System.Globalization"; version = "4.3.0"; sha256 = "1daqf33hssad94lamzg01y49xwndy2q97i2lrb7mgn28656qia1x"; }) + (fetchNuGet { pname = "runtime.any.System.Globalization.Calendars"; version = "4.3.0"; sha256 = "1ghhhk5psqxcg6w88sxkqrc35bxcz27zbqm2y5p5298pv3v7g201"; }) + (fetchNuGet { pname = "runtime.any.System.IO"; version = "4.3.0"; sha256 = "0l8xz8zn46w4d10bcn3l4yyn4vhb3lrj2zw8llvz7jk14k4zps5x"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection"; version = "4.3.0"; sha256 = "02c9h3y35pylc0zfq3wcsvc5nqci95nrkq0mszifc0sjx7xrzkly"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection.Extensions"; version = "4.3.0"; sha256 = "0zyri97dfc5vyaz9ba65hjj1zbcrzaffhsdlpxc9bh09wy22fq33"; }) + (fetchNuGet { pname = "runtime.any.System.Reflection.Primitives"; version = "4.3.0"; sha256 = "0x1mm8c6iy8rlxm8w9vqw7gb7s1ljadrn049fmf70cyh42vdfhrf"; }) + (fetchNuGet { pname = "runtime.any.System.Resources.ResourceManager"; version = "4.3.0"; sha256 = "03kickal0iiby82wa5flar18kyv82s9s6d4xhk5h4bi5kfcyfjzl"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime"; version = "4.3.0"; sha256 = "1cqh1sv3h5j7ixyb7axxbdkqx6cxy00p4np4j91kpm492rf4s25b"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime.Handles"; version = "4.3.0"; sha256 = "0bh5bi25nk9w9xi8z23ws45q5yia6k7dg3i4axhfqlnj145l011x"; }) + (fetchNuGet { pname = "runtime.any.System.Runtime.InteropServices"; version = "4.3.0"; sha256 = "0c3g3g3jmhlhw4klrc86ka9fjbl7i59ds1fadsb2l8nqf8z3kb19"; }) + (fetchNuGet { pname = "runtime.any.System.Text.Encoding"; version = "4.3.0"; sha256 = "0aqqi1v4wx51h51mk956y783wzags13wa7mgqyclacmsmpv02ps3"; }) + (fetchNuGet { pname = "runtime.any.System.Text.Encoding.Extensions"; version = "4.3.0"; sha256 = "0lqhgqi0i8194ryqq6v2gqx0fb86db2gqknbm0aq31wb378j7ip8"; }) + (fetchNuGet { pname = "runtime.any.System.Threading.Tasks"; version = "4.3.0"; sha256 = "03mnvkhskbzxddz4hm113zsch1jyzh2cs450dk3rgfjp8crlw1va"; }) (fetchNuGet { pname = "runtime.debian.8-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "16rnxzpk5dpbbl1x354yrlsbvwylrq456xzpsha1n9y3glnhyx9d"; }) (fetchNuGet { pname = "runtime.fedora.23-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0hkg03sgm2wyq8nqk6dbm9jh5vcq57ry42lkqdmfklrw89lsmr59"; }) (fetchNuGet { pname = "runtime.fedora.24-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0c2p354hjx58xhhz7wv6div8xpi90sc6ibdm40qin21bvi7ymcaa"; }) @@ -24,6 +43,11 @@ (fetchNuGet { pname = "runtime.ubuntu.14.04-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "160p68l2c7cqmyqjwxydcvgw7lvl1cr0znkw8fp24d1by9mqc8p3"; }) (fetchNuGet { pname = "runtime.ubuntu.16.04-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "15zrc8fgd8zx28hdghcj5f5i34wf3l6bq5177075m2bc2j34jrqy"; }) (fetchNuGet { pname = "runtime.ubuntu.16.10-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "1p4dgxax6p7rlgj4q73k73rslcnz4wdcv8q2flg1s8ygwcm58ld5"; }) + (fetchNuGet { pname = "runtime.unix.System.Console"; version = "4.3.0"; sha256 = "1pfpkvc6x2if8zbdzg9rnc5fx51yllprl8zkm5npni2k50lisy80"; }) + (fetchNuGet { pname = "runtime.unix.System.Diagnostics.Debug"; version = "4.3.0"; sha256 = "1lps7fbnw34bnh3lm31gs5c0g0dh7548wfmb8zz62v0zqz71msj5"; }) + (fetchNuGet { pname = "runtime.unix.System.IO.FileSystem"; version = "4.3.0"; sha256 = "14nbkhvs7sji5r1saj2x8daz82rnf9kx28d3v2qss34qbr32dzix"; }) + (fetchNuGet { pname = "runtime.unix.System.Private.Uri"; version = "4.3.0"; sha256 = "1jx02q6kiwlvfksq1q9qr17fj78y5v6mwsszav4qcz9z25d5g6vk"; }) + (fetchNuGet { pname = "runtime.unix.System.Runtime.Extensions"; version = "4.3.0"; sha256 = "0pnxxmm8whx38dp6yvwgmh22smknxmqs5n513fc7m4wxvs1bvi4p"; }) (fetchNuGet { pname = "System.AppContext"; version = "4.3.0"; sha256 = "1649qvy3dar900z3g817h17nl8jp4ka5vcfmsr05kh0fshn7j3ya"; }) (fetchNuGet { pname = "System.Buffers"; version = "4.3.0"; sha256 = "0fgns20ispwrfqll4q1zc1waqcmylb3zc50ys9x8zlwxh9pmd9jy"; }) (fetchNuGet { pname = "System.Collections"; version = "4.3.0"; sha256 = "19r4y64dqyrq6k4706dnyhhw7fs24kpp3awak7whzss39dakpxk9"; }) @@ -45,6 +69,7 @@ (fetchNuGet { pname = "System.Linq"; version = "4.3.0"; sha256 = "1w0gmba695rbr80l1k2h4mrwzbzsyfl2z4klmpbsvsg5pm4a56s7"; }) (fetchNuGet { pname = "System.Linq.Expressions"; version = "4.3.0"; sha256 = "0ky2nrcvh70rqq88m9a5yqabsl4fyd17bpr63iy2mbivjs2nyypv"; }) (fetchNuGet { pname = "System.ObjectModel"; version = "4.3.0"; sha256 = "191p63zy5rpqx7dnrb3h7prvgixmk168fhvvkkvhlazncf8r3nc2"; }) + (fetchNuGet { pname = "System.Private.Uri"; version = "4.3.0"; sha256 = "04r1lkdnsznin0fj4ya1zikxiqr0h6r6a1ww2dsm60gqhdrf0mvx"; }) (fetchNuGet { pname = "System.Reflection"; version = "4.3.0"; sha256 = "0xl55k0mw8cd8ra6dxzh974nxif58s3k1rjv1vbd7gjbjr39j11m"; }) (fetchNuGet { pname = "System.Reflection.Emit"; version = "4.3.0"; sha256 = "11f8y3qfysfcrscjpjym9msk7lsfxkk4fmz9qq95kn3jd0769f74"; }) (fetchNuGet { pname = "System.Reflection.Emit.ILGeneration"; version = "4.3.0"; sha256 = "0w1n67glpv8241vnpz1kl14sy7zlnw414aqwj4hcx5nd86f6994q"; }) diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/saleae-logic-2/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/saleae-logic-2/default.nix index 2a75c9855e..1c049eac7a 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/saleae-logic-2/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/saleae-logic-2/default.nix @@ -1,10 +1,10 @@ { lib, fetchurl, makeDesktopItem, appimageTools }: let name = "saleae-logic-2"; - version = "2.4.2"; + version = "2.4.3"; src = fetchurl { url = "https://downloads.saleae.com/logic2/Logic-${version}-master.AppImage"; - sha256 = "sha256-A0Gd/CDd1COWbBXa87eW+A8AKyQzubJ3qSpj/JnWeZk="; + hash = "sha256-xF87Q1K25/9pUYt660RY2RCIC6u2m2ArBQb2nWhiKvw="; }; desktopItem = makeDesktopItem { inherit name; diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/strace/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/strace/default.nix index 351762233d..538437b2a6 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/strace/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/strace/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "strace"; - version = "6.0"; + version = "6.1"; src = fetchurl { url = "https://strace.io/files/${version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-ktcgpmaFXp8cahFRL9bplnSoK7/hRCVXgV8s6OEpMzg="; + sha256 = "sha256-JXnpzsN9u3hvbqC+vRX0DdVh7yveKiouzc5ZY7AYWf0="; }; depsBuildBuild = [ buildPackages.stdenv.cc ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/misc/texlab/default.nix b/third_party/nixpkgs/pkgs/development/tools/misc/texlab/default.nix index 06ba3725ba..5ca2949a55 100644 --- a/third_party/nixpkgs/pkgs/development/tools/misc/texlab/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/misc/texlab/default.nix @@ -46,9 +46,7 @@ rustPlatform.buildRustPackage rec { installManPage texlab.1 ''; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "An implementation of the Language Server Protocol for LaTeX"; diff --git a/third_party/nixpkgs/pkgs/development/tools/mold/default.nix b/third_party/nixpkgs/pkgs/development/tools/mold/default.nix index 73aff70db3..c02fa4a9fa 100644 --- a/third_party/nixpkgs/pkgs/development/tools/mold/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/mold/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "mold"; - version = "1.7.1"; + version = "1.8.0"; src = fetchFromGitHub { owner = "rui314"; repo = pname; rev = "v${version}"; - hash = "sha256-sC8rJOyQB8mDCCmfpk2lVDPTWxBj7tZxVXQw8agl7t0="; + hash = "sha256-VykBOXeU3I6ZSmRIlngLdoLF4V2nb5QW/f8tr9Wn9o8="; }; nativeBuildInputs = [ cmake ninja ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/mongosh/gen/composition.nix b/third_party/nixpkgs/pkgs/development/tools/mongosh/composition.nix similarity index 89% rename from third_party/nixpkgs/pkgs/development/tools/mongosh/gen/composition.nix rename to third_party/nixpkgs/pkgs/development/tools/mongosh/composition.nix index 6740fed1bf..dac56f12aa 100644 --- a/third_party/nixpkgs/pkgs/development/tools/mongosh/gen/composition.nix +++ b/third_party/nixpkgs/pkgs/development/tools/mongosh/composition.nix @@ -5,7 +5,7 @@ }, system ? builtins.currentSystem, nodejs ? pkgs."nodejs-16_x"}: let - nodeEnv = import ../../../node-packages/node-env.nix { + nodeEnv = import ../../node-packages/node-env.nix { inherit (pkgs) stdenv lib python2 runCommand writeTextFile writeShellScript; inherit pkgs nodejs; libtool = if pkgs.stdenv.isDarwin then pkgs.darwin.cctools else null; diff --git a/third_party/nixpkgs/pkgs/development/tools/mongosh/default.nix b/third_party/nixpkgs/pkgs/development/tools/mongosh/default.nix index d251a3c380..c71c7dcb72 100644 --- a/third_party/nixpkgs/pkgs/development/tools/mongosh/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/mongosh/default.nix @@ -1,7 +1,7 @@ { pkgs, stdenv, lib, testers, mongosh }: let - nodePackages = import ./gen/composition.nix { + nodePackages = import ./composition.nix { inherit pkgs; inherit (stdenv.hostPlatform) system; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/mongosh/generate.sh b/third_party/nixpkgs/pkgs/development/tools/mongosh/generate.sh index e58c9a93f3..ef120ee9e9 100755 --- a/third_party/nixpkgs/pkgs/development/tools/mongosh/generate.sh +++ b/third_party/nixpkgs/pkgs/development/tools/mongosh/generate.sh @@ -1,21 +1,13 @@ #!/usr/bin/env nix-shell #! nix-shell -i bash -p node2nix -MONGOSH_ROOT="$( - cd "$(dirname "$0")" - pwd -)" -pushd $MONGOSH_ROOT 1>/dev/null - -rm -rf gen && mkdir -p gen +cd "$(dirname "$0")" node2nix \ --no-copy-node-env \ --node-env ../../node-packages/node-env.nix \ --input packages.json \ - --output gen/packages.nix \ - --composition gen/composition.nix \ + --output packages.nix \ + --composition composition.nix \ --strip-optional-dependencies \ --nodejs-16 - -popd 1>/dev/null diff --git a/third_party/nixpkgs/pkgs/development/tools/mongosh/gen/packages.nix b/third_party/nixpkgs/pkgs/development/tools/mongosh/packages.nix similarity index 81% rename from third_party/nixpkgs/pkgs/development/tools/mongosh/gen/packages.nix rename to third_party/nixpkgs/pkgs/development/tools/mongosh/packages.nix index 04dd83757a..1d838ce670 100644 --- a/third_party/nixpkgs/pkgs/development/tools/mongosh/gen/packages.nix +++ b/third_party/nixpkgs/pkgs/development/tools/mongosh/packages.nix @@ -22,13 +22,13 @@ let sha512 = "TDCmlK5eOvH+eH7cdAFlNXeVJqWIQ7gW9tY1GJIpUtFb6CmjVyq2VM3u71bOyR8CRihcCgMUYoDNyLXao3+70Q=="; }; }; - "@babel/compat-data-7.19.3" = { + "@babel/compat-data-7.20.5" = { name = "_at_babel_slash_compat-data"; packageName = "@babel/compat-data"; - version = "7.19.3"; + version = "7.20.5"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.19.3.tgz"; - sha512 = "prBHMK4JYYK+wDjJF1q99KK4JLL+egWS4nmNqdlMUgCExMZ+iZW0hGhyC3VEbsPjvaN0TBhW//VIFwBrk8sEiw=="; + url = "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.20.5.tgz"; + sha512 = "KZXo2t10+/jxmkhNXc7pZTqRvSOIvVv/+lJwHS+B2rErwOyjuVRh60yVpb7liQ1U5t7lLJ1bz+t8tSypUZdm0g=="; }; }; "@babel/core-7.16.12" = { @@ -40,31 +40,31 @@ let sha512 = "dK5PtG1uiN2ikk++5OzSYsitZKny4wOCD0nrO4TqnW4BVBTQ2NGS3NgilvT/TEyxTST7LNyWV/T4tXDoD3fOgg=="; }; }; - "@babel/core-7.19.3" = { + "@babel/core-7.20.5" = { name = "_at_babel_slash_core"; packageName = "@babel/core"; - version = "7.19.3"; + version = "7.20.5"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/core/-/core-7.19.3.tgz"; - sha512 = "WneDJxdsjEvyKtXKsaBGbDeiyOjR5vYq4HcShxnIbG0qixpoHjI3MqeZM9NDvsojNCEBItQE4juOo/bU6e72gQ=="; + url = "https://registry.npmjs.org/@babel/core/-/core-7.20.5.tgz"; + sha512 = "UdOWmk4pNWTm/4DlPUl/Pt4Gz4rcEMb7CY0Y3eJl5Yz1vI8ZJGmHWaVE55LoxRjdpx0z259GE9U5STA9atUinQ=="; }; }; - "@babel/generator-7.19.3" = { + "@babel/generator-7.20.5" = { name = "_at_babel_slash_generator"; packageName = "@babel/generator"; - version = "7.19.3"; + version = "7.20.5"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/generator/-/generator-7.19.3.tgz"; - sha512 = "fqVZnmp1ncvZU757UzDheKZpfPgatqY59XtW2/j/18H7u76akb8xqvjw82f+i2UKd/ksYsSick/BCLQUUtJ/qQ=="; + url = "https://registry.npmjs.org/@babel/generator/-/generator-7.20.5.tgz"; + sha512 = "jl7JY2Ykn9S0yj4DQP82sYvPU+T3g0HFcWTqDLqiuA9tGRNIj9VfbtXGAYTTkyNEnQk1jkMGOdYka8aG/lulCA=="; }; }; - "@babel/helper-compilation-targets-7.19.3" = { + "@babel/helper-compilation-targets-7.20.0" = { name = "_at_babel_slash_helper-compilation-targets"; packageName = "@babel/helper-compilation-targets"; - version = "7.19.3"; + version = "7.20.0"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-compilation-targets/-/helper-compilation-targets-7.19.3.tgz"; - sha512 = "65ESqLGyGmLvgR0mst5AdW1FkNlj9rQsCKduzEoEPhBCDFGXvz2jW6bXFG6i0/MrV2s7hhXjjb2yAzcPuQlLwg=="; + url = "https://registry.npmjs.org/@babel/helper-compilation-targets/-/helper-compilation-targets-7.20.0.tgz"; + sha512 = "0jp//vDGp9e8hZzBc6N/KwA5ZK3Wsm/pfm4CrY7vzegkVxc65SgSn6wYOnwHe9Js9HRQ1YTCKLGPzDtaS3RoLQ=="; }; }; "@babel/helper-environment-visitor-7.18.9" = { @@ -103,31 +103,31 @@ let sha512 = "0NFvs3VkuSYbFi1x2Vd6tKrywq+z/cLeYC/RJNFrIX/30Bf5aiGYbtvGXolEktzJH8o5E5KJ3tT+nkxuuZFVlA=="; }; }; - "@babel/helper-module-transforms-7.19.0" = { + "@babel/helper-module-transforms-7.20.2" = { name = "_at_babel_slash_helper-module-transforms"; packageName = "@babel/helper-module-transforms"; - version = "7.19.0"; + version = "7.20.2"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-module-transforms/-/helper-module-transforms-7.19.0.tgz"; - sha512 = "3HBZ377Fe14RbLIA+ac3sY4PTgpxHVkFrESaWhoI5PuyXPBBX8+C34qblV9G89ZtycGJCmCI/Ut+VUDK4bltNQ=="; + url = "https://registry.npmjs.org/@babel/helper-module-transforms/-/helper-module-transforms-7.20.2.tgz"; + sha512 = "zvBKyJXRbmK07XhMuujYoJ48B5yvvmM6+wcpv6Ivj4Yg6qO7NOZOSnvZN9CRl1zz1Z4cKf8YejmCMh8clOoOeA=="; }; }; - "@babel/helper-plugin-utils-7.19.0" = { + "@babel/helper-plugin-utils-7.20.2" = { name = "_at_babel_slash_helper-plugin-utils"; packageName = "@babel/helper-plugin-utils"; - version = "7.19.0"; + version = "7.20.2"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-plugin-utils/-/helper-plugin-utils-7.19.0.tgz"; - sha512 = "40Ryx7I8mT+0gaNxm8JGTZFUITNqdLAgdg0hXzeVZxVD6nFsdhQvip6v8dqkRHzsz1VFpFAaOCHNn0vKBL7Czw=="; + url = "https://registry.npmjs.org/@babel/helper-plugin-utils/-/helper-plugin-utils-7.20.2.tgz"; + sha512 = "8RvlJG2mj4huQ4pZ+rU9lqKi9ZKiRmuvGuM2HlWmkmgOhbs6zEAw6IEiJ5cQqGbDzGZOhwuOQNtZMi/ENLjZoQ=="; }; }; - "@babel/helper-simple-access-7.18.6" = { + "@babel/helper-simple-access-7.20.2" = { name = "_at_babel_slash_helper-simple-access"; packageName = "@babel/helper-simple-access"; - version = "7.18.6"; + version = "7.20.2"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-simple-access/-/helper-simple-access-7.18.6.tgz"; - sha512 = "iNpIgTgyAvDQpDj76POqg+YEt8fPxx3yaNBg3S30dxNKm2SWfYhD0TGrK/Eu9wHpUW63VQU894TsTg+GLbUa1g=="; + url = "https://registry.npmjs.org/@babel/helper-simple-access/-/helper-simple-access-7.20.2.tgz"; + sha512 = "+0woI/WPq59IrqDYbVGfshjT5Dmk/nnbdpcF8SnMhhXObpTq2KNBdLFRFrkVdbDOyUmHBCxzm5FHV1rACIkIbA=="; }; }; "@babel/helper-split-export-declaration-7.18.6" = { @@ -139,13 +139,13 @@ let sha512 = "bde1etTx6ZyTmobl9LLMMQsaizFVZrquTEHOqKeQESMKo4PlObf+8+JA25ZsIpZhT/WEd39+vOdLXAFG/nELpA=="; }; }; - "@babel/helper-string-parser-7.18.10" = { + "@babel/helper-string-parser-7.19.4" = { name = "_at_babel_slash_helper-string-parser"; packageName = "@babel/helper-string-parser"; - version = "7.18.10"; + version = "7.19.4"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-string-parser/-/helper-string-parser-7.18.10.tgz"; - sha512 = "XtIfWmeNY3i4t7t4D2t02q50HvqHybPqW2ki1kosnvWCwuCMeo81Jf0gwr85jy/neUdg5XDdeFE/80DXiO+njw=="; + url = "https://registry.npmjs.org/@babel/helper-string-parser/-/helper-string-parser-7.19.4.tgz"; 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packageName = "@types/sinon-chai"; - version = "3.2.8"; + version = "3.2.9"; src = fetchurl { - url = "https://registry.npmjs.org/@types/sinon-chai/-/sinon-chai-3.2.8.tgz"; - sha512 = "d4ImIQbT/rKMG8+AXpmcan5T2/PNeSjrYhvkwet6z0p8kzYtfgA32xzOBlbU0yqJfq+/0Ml805iFoODO0LP5/g=="; + url = "https://registry.npmjs.org/@types/sinon-chai/-/sinon-chai-3.2.9.tgz"; + sha512 = "/19t63pFYU0ikrdbXKBWj9PCdnKyTd0Qkz0X91Ta081cYsq90OxYdcWwK/dwEoDa6dtXgj2HJfmzgq+QZTHdmQ=="; }; }; "@types/sinonjs__fake-timers-8.1.2" = { @@ -616,22 +625,22 @@ let sha512 = "nne9/IiQ/hzIhY6pdDnbBtz7DjPTKrY00P/zvPSm5pOFkl6xuGrGnXn/VtTNNfNtAfZ9/1RtehkszU9qcTii0Q=="; }; }; - "acorn-7.4.1" = { + "acorn-8.8.1" = { name = "acorn"; packageName = "acorn"; - version = "7.4.1"; + version = "8.8.1"; src = fetchurl { - url = "https://registry.npmjs.org/acorn/-/acorn-7.4.1.tgz"; - sha512 = "nQyp0o1/mNdbTO1PO6kHkwSrmgZ0MT/jCCpNiwbUjGoRN4dlBhqJtoQuCnEOKzgTVwg0ZWiCoQy6SxMebQVh8A=="; + url = "https://registry.npmjs.org/acorn/-/acorn-8.8.1.tgz"; 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}; }; - "acorn-static-class-features-0.2.4" = { + "acorn-static-class-features-1.0.0" = { name = "acorn-static-class-features"; packageName = "acorn-static-class-features"; - version = "0.2.4"; + version = "1.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/acorn-static-class-features/-/acorn-static-class-features-0.2.4.tgz"; - sha512 = "5X4mpYq5J3pdndLmIB0+WtFd/mKWnNYpuTlTzj32wUu/PMmEGOiayQ5UrqgwdBNiaZBtDDh5kddpP7Yg2QaQYA=="; + url = "https://registry.npmjs.org/acorn-static-class-features/-/acorn-static-class-features-1.0.0.tgz"; + sha512 = "XZJECjbmMOKvMHiNzbiPXuXpLAJfN3dAKtfIYbk1eHiWdsutlek+gS7ND4B8yJ3oqvHo1NxfafnezVmq7NXK0A=="; }; }; "analytics-node-5.2.0" = { @@ -832,13 +841,13 @@ let sha512 = "EHcyIPBQ4BSGlvjB16k5KgAJ27CIsHY/2JBmCRReo48y9rQ3MaUzWX3KVlBa4U7MyX02HdVj0K7C3WaB3ju7FQ=="; }; }; - "caniuse-lite-1.0.30001412" = { + "caniuse-lite-1.0.30001439" = { name = "caniuse-lite"; packageName = "caniuse-lite"; - version = "1.0.30001412"; + version = "1.0.30001439"; src = fetchurl { - url = "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001412.tgz"; 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}; }; "cross-spawn-7.0.3" = { @@ -985,15 +994,6 @@ let sha512 = "PRWFHuSU3eDtQJPvnNY7Jcket1j0t5OuOsFzPPzsekD52Zl8qUfFIPEiswXqIvHWGVHOgX+7G/vCNNhehwxfkQ=="; }; }; - "denque-2.1.0" = { - name = "denque"; - packageName = "denque"; - version = "2.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/denque/-/denque-2.1.0.tgz"; - sha512 = "HVQE3AAb/pxF8fQAoiqpvg9i3evqug3hoiwakOyZAwJm+6vZehbkYXZ0l4JxS+I3QxM97v5aaRNhj8v5oBhekw=="; - }; - }; "editorconfig-0.15.3" = { name = "editorconfig"; packageName = "editorconfig"; @@ -1003,13 +1003,13 @@ let sha512 = "M9wIMFx96vq0R4F+gRpY3o2exzb8hEj/n9S8unZtHSvYjibBp/iMufSzvmOcV/laG0ZtuTVGtiJggPOSW2r93g=="; }; }; - "electron-to-chromium-1.4.267" = { + "electron-to-chromium-1.4.284" = { name = "electron-to-chromium"; packageName = "electron-to-chromium"; - version = "1.4.267"; + version = "1.4.284"; src = fetchurl { - url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.4.267.tgz"; - sha512 = "ik4QnU3vFRsVgwt0vsn7og28++2cGnsdgqYagaE3ur1f3wj5AzmWu+1k3//SOc6CwkP2xfu46PNfVP6X+SRepg=="; + url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.4.284.tgz"; + sha512 = "M8WEXFuKXMYMVr45fo8mq0wUrrJHheiKZf6BArTKk9ZBYCKJEOU5H8cdWgDT+qCVZf7Na4lVUaZsA+h6uA9+PA=="; }; }; "emphasize-3.0.0" = { @@ -1021,6 +1021,15 @@ let sha512 = "xhtAWvxdkxsQbcCLGVjlfB7cQ4bWSPYXeaGDwK5Bl7n2y/9R+MVK5UNBTmZ9N8m/YShsiyGgQBgFGcjOWCWXHQ=="; }; }; + "encoding-0.1.13" = { + name = "encoding"; + packageName = "encoding"; + version = "0.1.13"; + src = fetchurl { + url = "https://registry.npmjs.org/encoding/-/encoding-0.1.13.tgz"; + sha512 = "ETBauow1T35Y/WZMkio9jiM0Z5xjHHmJ4XmjZOq1l/dXz3lr2sRn87nJy20RupqSh1F2m3HHPSp8ShIPQJrJ3A=="; + }; + }; "escalade-3.1.1" = { name = "escalade"; packageName = "escalade"; @@ -1165,6 +1174,15 @@ let sha512 = "9riBbIorIgSvsLQHL/rKEK6vJBexhgSRZC/tkieuei7a1U+CHgrXJVqW+RPswgEyuPbxcGCpx0QXO3iJuKRrrw=="; }; }; + "iconv-lite-0.6.3" = { + name = "iconv-lite"; + packageName = "iconv-lite"; + version = "0.6.3"; + src = fetchurl { + url = "https://registry.npmjs.org/iconv-lite/-/iconv-lite-0.6.3.tgz"; 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}; }; - "joi-17.6.1" = { + "joi-17.7.0" = { name = "joi"; packageName = "joi"; - version = "17.6.1"; + version = "17.7.0"; src = fetchurl { - url = "https://registry.npmjs.org/joi/-/joi-17.6.1.tgz"; - sha512 = "Hl7/iBklIX345OCM1TiFSCZRVaAOLDGlWCp0Df2vWYgBgjkezaR7Kvm3joBciBHQjZj5sxXs859r6eqsRSlG8w=="; + url = "https://registry.npmjs.org/joi/-/joi-17.7.0.tgz"; + sha512 = "1/ugc8djfn93rTE3WRKdCzGGt/EtiYKxITMO4Wiv6q5JL1gl9ePt4kBsl1S499nbosspfctIQTpYIhSmHA3WAg=="; }; }; "join-component-1.1.0" = { @@ -1264,13 +1282,13 @@ let sha512 = "bF7vcQxbODoGK1imE2P9GS9aw4zD0Sd+Hni68IMZLj7zRnquH7dXUmMw9hDI5S/Jzt7q+IyTXN0rSg2GI0IKhQ=="; }; }; - "js-beautify-1.14.6" = { + "js-beautify-1.14.7" = { name = "js-beautify"; packageName = "js-beautify"; - version = "1.14.6"; + version = "1.14.7"; src = fetchurl { - url = "https://registry.npmjs.org/js-beautify/-/js-beautify-1.14.6.tgz"; - sha512 = "GfofQY5zDp+cuHc+gsEXKPpNw2KbPddreEo35O6jT6i0RVK6LhsoYBhq5TvK4/n74wnA0QbK8gGd+jUZwTMKJw=="; + url = "https://registry.npmjs.org/js-beautify/-/js-beautify-1.14.7.tgz"; + sha512 = "5SOX1KXPFKx+5f6ZrPsIPEY7NwKeQz47n3jm2i+XeHx9MoRsfQenlOP13FQhWvg8JRS0+XLO6XYUQ2GX+q+T9A=="; }; }; "js-tokens-4.0.0" = { @@ -1372,22 +1390,31 @@ let sha512 = "ZS4Bp4r/Zoeq6+NLJpP+0Zzm0pR8whtGPf1XExKLJBAczGMnSi3It14OiNCStjQjM6NU1okjQGSxgEZN8eBYKg=="; }; }; - "minimatch-5.1.0" = { + "minimatch-5.1.1" = { name = "minimatch"; packageName = "minimatch"; - version = "5.1.0"; + version = "5.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/minimatch/-/minimatch-5.1.0.tgz"; - sha512 = "9TPBGGak4nHfGZsPBohm9AWg6NoT7QTCehS3BIJABslyZbzxfV78QM2Y6+i741OPZIafFAaiiEMh5OyIrJPgtg=="; + url = "https://registry.npmjs.org/minimatch/-/minimatch-5.1.1.tgz"; + sha512 = "362NP+zlprccbEt/SkxKfRMHnNY85V74mVnpUpNyr3F35covl09Kec7/sEFLt3RA4oXmewtoaanoIf67SE5Y5g=="; }; }; - "minipass-3.3.5" = { + "minipass-3.3.6" = { name = "minipass"; packageName = "minipass"; - version = "3.3.5"; + version = "3.3.6"; src = fetchurl { - url = "https://registry.npmjs.org/minipass/-/minipass-3.3.5.tgz"; - sha512 = "rQ/p+KfKBkeNwo04U15i+hOwoVBVmekmm/HcfTkTN2t9pbQKCMm4eN5gFeqgrrSp/kH/7BYYhTIHOxGqzbBPaA=="; + url = "https://registry.npmjs.org/minipass/-/minipass-3.3.6.tgz"; + sha512 = "DxiNidxSEK+tHG6zOIklvNOwm3hvCrbUrdtzY74U6HKTJxvIDfOUL5W5P2Ghd3DTkhhKPYGqeNUIh5qcM4YBfw=="; + }; + }; + "minipass-4.0.0" = { + name = "minipass"; + packageName = "minipass"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/minipass/-/minipass-4.0.0.tgz"; + sha512 = "g2Uuh2jEKoht+zvO6vJqXmYpflPqzRBT+Th2h01DKh5z7wbY/AZ2gCQ78cP70YoHPyFdY30YBV5WxgLOEwOykw=="; }; }; "minizlib-2.1.2" = { @@ -1408,22 +1435,13 @@ let sha512 = "vVqVZQyf3WLx2Shd0qJ9xuvqgAyKPLAiqITEtqW0oIUjzo3PePDd6fW9iFz30ef7Ysp/oiWqbhszeGWW2T6Gzw=="; }; }; - "mongodb-4.10.0" = { + "mongodb-4.12.1" = { name = "mongodb"; packageName = "mongodb"; - version = "4.10.0"; + version = "4.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/mongodb/-/mongodb-4.10.0.tgz"; - sha512 = "My2QxLTw0Cc1O9gih0mz4mqo145Jq4rLAQx0Glk/Ha9iYBzYpt4I2QFNRIh35uNFNfe8KFQcdwY1/HKxXBkinw=="; - }; - }; - "mongodb-ace-autocompleter-0.11.1" = { - name = "mongodb-ace-autocompleter"; - packageName = "mongodb-ace-autocompleter"; - version = "0.11.1"; - src = fetchurl { - url = "https://registry.npmjs.org/mongodb-ace-autocompleter/-/mongodb-ace-autocompleter-0.11.1.tgz"; - sha512 = "owAU1JRy05XiwUj2+WG3jHPEz8UAjpciW0Hl+mwrYvZJJZG898XUlKqL5Cryh3WogSyxlhEW2SWT4zHKN7AAcg=="; + url = "https://registry.npmjs.org/mongodb/-/mongodb-4.12.1.tgz"; + sha512 = "koT87tecZmxPKtxRQD8hCKfn+ockEL2xBiUvx3isQGI6mFmagWt4f4AyCE9J4sKepnLhMacoCTQQA6SLAI2L6w=="; }; }; "mongodb-build-info-1.4.0" = { @@ -1435,13 +1453,13 @@ let sha512 = "X6bKL2kz2DY2cQp/QKJW3Qfb9YgtHZ4+5W48UAIsuIf0OtS5O4pU6/Mh6MCaVt/4VGejERZFuRXnrufMUFKC7w=="; }; }; - "mongodb-connection-string-url-2.5.3" = { + "mongodb-connection-string-url-2.6.0" = { name = "mongodb-connection-string-url"; packageName = "mongodb-connection-string-url"; - version = "2.5.3"; + version = "2.6.0"; src = fetchurl { - url = "https://registry.npmjs.org/mongodb-connection-string-url/-/mongodb-connection-string-url-2.5.3.tgz"; - sha512 = "f+/WsED+xF4B74l3k9V/XkTVj5/fxFH2o5ToKXd8Iyi5UhM+sO9u0Ape17Mvl/GkZaFtM0HQnzAG5OTmhKw+tQ=="; + url = "https://registry.npmjs.org/mongodb-connection-string-url/-/mongodb-connection-string-url-2.6.0.tgz"; + sha512 = "WvTZlI9ab0QYtTYnuMLgobULWhokRjtC7db9LtcVfJ+Hsnyr5eo6ZtNAt3Ly24XZScGMelOcGtm7lSn0332tPQ=="; }; }; "mongodb-log-writer-1.1.4" = { @@ -1633,13 +1651,13 @@ let sha512 = "o4S4Qh6L2jpnCy83ysZDau+VORNvnFw07CKSAymkd6ICNVEPisMyzlc00KlvvicsxKck94SEwhDnMNdICzO+tA=="; }; }; - "safe-buffer-5.1.2" = { - name = "safe-buffer"; - packageName = "safe-buffer"; - version = "5.1.2"; + "safer-buffer-2.1.2" = { + name = "safer-buffer"; + packageName = "safer-buffer"; + version = "2.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/safe-buffer/-/safe-buffer-5.1.2.tgz"; - sha512 = "Gd2UZBJDkXlY7GbJxfsE8/nvKkUEU1G38c1siN6QP6a9PT9MmHB8GnpscSmMJSoF8LOIrt8ud/wPtojys4G6+g=="; + url = "https://registry.npmjs.org/safer-buffer/-/safer-buffer-2.1.2.tgz"; + sha512 = "YZo3K82SD7Riyi0E1EQPojLz7kpepnSQI9IyPbHHg1XXXevb5dJI7tpyN2ADxGcQbHG7vcyRHk0cbwqcQriUtg=="; }; }; "saslprep-git+https://github.com/mongodb-js/saslprep#v1.0.4" = { @@ -1670,13 +1688,13 @@ let sha512 = "b39TBaTSfV6yBrapU89p5fKekE2m/NwnDocOVruQFS1/veMgdzuPcnOM34M6CwxW8jH/lxEa5rBoDeUwu5HHTw=="; }; }; - "semver-7.3.7" = { + "semver-7.3.8" = { name = "semver"; packageName = "semver"; - version = "7.3.7"; + version = "7.3.8"; src = fetchurl { - url = "https://registry.npmjs.org/semver/-/semver-7.3.7.tgz"; - sha512 = "QlYTucUYOews+WeEujDoEGziz4K6c47V/Bd+LjSSYcA94p+DmINdf7ncaUinThfvZyu13lN9OY1XDxt8C0Tw0g=="; + url = "https://registry.npmjs.org/semver/-/semver-7.3.8.tgz"; + sha512 = "NB1ctGL5rlHrPJtFDVIVzTyQylMLu9N9VICA6HSFJo8MCGVTMW6gfpicwKmmK/dAjTOrqu5l63JJOpDSrAis3A=="; }; }; "shebang-command-2.0.0" = { @@ -1715,13 +1733,13 @@ let sha512 = "94hK0Hh8rPqQl2xXc3HsaBoOXKV20MToPkcXvwbISWLEs+64sBq5kFgn2kJDHb1Pry9yrP0dxrCI9RRci7RXKg=="; }; }; - "socks-2.7.0" = { + "socks-2.7.1" = { name = "socks"; packageName = "socks"; - version = "2.7.0"; + version = "2.7.1"; src = fetchurl { - url = "https://registry.npmjs.org/socks/-/socks-2.7.0.tgz"; - sha512 = "scnOe9y4VuiNUULJN72GrM26BNOjVsfPXI+j+98PkyEfsIXroa5ofyjT+FzGvn/xHs73U2JtoBYAVx9Hl4quSA=="; + url = "https://registry.npmjs.org/socks/-/socks-2.7.1.tgz"; + sha512 = "7maUZy1N7uo6+WVEX6psASxtNlKaNVMlGQKkG/63nEDdLOWNbiUMoLK7X4uYoLhQstau72mLgfEWcXcwsaHbYQ=="; }; }; "source-map-0.5.7" = { @@ -1778,13 +1796,13 @@ let sha512 = "/6CCJOKB5Fpi0x7/DCbV7uiFPgwGCeJsAaSondXS2DjLBv7ER2worVGvQWJqPM0kgOKO6auaCcSWpJKnrDmXjw=="; }; }; - "tar-6.1.11" = { + "tar-6.1.13" = { name = "tar"; packageName = "tar"; - version = "6.1.11"; + version = "6.1.13"; src = fetchurl { - url = "https://registry.npmjs.org/tar/-/tar-6.1.11.tgz"; - sha512 = "an/KZQzQUkZCkuoAA64hM92X0Urb6VpRhAFllDzz44U2mcD5scmT3zBc4VgVpkugF580+DQn8eAFSyoQt0tznA=="; + url = "https://registry.npmjs.org/tar/-/tar-6.1.13.tgz"; + sha512 = "jdIBIN6LTIe2jqzay/2vtYLlBHa3JF42ot3h1dW8Q0PaAG4v8rm0cvpVePtau5C6OKXGGcgO9q2AMNSWxiLqKw=="; }; }; "text-table-0.2.0" = { @@ -1823,13 +1841,13 @@ let sha512 = "l7FvfAHlcmulp8kr+flpQZmVwtu7nfRV7NZujtN0OqES8EL4O4e0qqzL0DC5gAvx/ZC/9lk6rhcUwYvkBnBnYA=="; }; }; - "update-browserslist-db-1.0.9" = { + "update-browserslist-db-1.0.10" = { name = "update-browserslist-db"; packageName = "update-browserslist-db"; - version = "1.0.9"; + version = "1.0.10"; src = fetchurl { - url = "https://registry.npmjs.org/update-browserslist-db/-/update-browserslist-db-1.0.9.tgz"; - sha512 = "/xsqn21EGVdXI3EXSum1Yckj3ZVZugqyOZQ/CxYPBD/R+ko9NSUScf8tFF4dOKY+2pvSSJA/S+5B8s4Zr4kyvg=="; + url = "https://registry.npmjs.org/update-browserslist-db/-/update-browserslist-db-1.0.10.tgz"; + sha512 = "OztqDenkfFkbSG+tRxBeAnCVPckDBcvibKd35yDONx6OU8N7sqgwc7rCbkJ/WcYtVRZ4ba68d6byhC21GFh7sQ=="; }; }; "uuid-8.3.2" = { @@ -1928,26 +1946,26 @@ in mongosh = nodeEnv.buildNodePackage { name = "mongosh"; packageName = "mongosh"; - version = "1.6.0"; + version = "1.6.1"; src = fetchurl { - url = "https://registry.npmjs.org/mongosh/-/mongosh-1.6.0.tgz"; - sha512 = "SZ/FYATnLuxzdLb2iTRNnE228WP0Lykmjs4yPUOZ/QWNMVYssYPOin9BS3Uznd1++miur5/+AqCvjQXKkOhH+Q=="; + url = "https://registry.npmjs.org/mongosh/-/mongosh-1.6.1.tgz"; + sha512 = "fyiPTYi2yfK+lZJXiYCt8JX3SjOm3xyXo+MHh2bYZSO0DLH1uBmAGvnFj6sigJ0pd//u7QcyaiKnspRuVLSaJw=="; }; dependencies = [ sources."@ampproject/remapping-2.2.0" sources."@babel/code-frame-7.18.6" - sources."@babel/compat-data-7.19.3" - (sources."@babel/core-7.19.3" // { + sources."@babel/compat-data-7.20.5" + (sources."@babel/core-7.20.5" // { dependencies = [ sources."semver-6.3.0" ]; }) - (sources."@babel/generator-7.19.3" // { + (sources."@babel/generator-7.20.5" // { dependencies = [ sources."@jridgewell/gen-mapping-0.3.2" ]; }) - (sources."@babel/helper-compilation-targets-7.19.3" // { + (sources."@babel/helper-compilation-targets-7.20.0" // { dependencies = [ sources."semver-6.3.0" ]; @@ -1956,77 +1974,78 @@ in sources."@babel/helper-function-name-7.19.0" sources."@babel/helper-hoist-variables-7.18.6" sources."@babel/helper-module-imports-7.18.6" - sources."@babel/helper-module-transforms-7.19.0" - sources."@babel/helper-plugin-utils-7.19.0" - sources."@babel/helper-simple-access-7.18.6" + sources."@babel/helper-module-transforms-7.20.2" + sources."@babel/helper-plugin-utils-7.20.2" + sources."@babel/helper-simple-access-7.20.2" sources."@babel/helper-split-export-declaration-7.18.6" - sources."@babel/helper-string-parser-7.18.10" + sources."@babel/helper-string-parser-7.19.4" sources."@babel/helper-validator-identifier-7.19.1" sources."@babel/helper-validator-option-7.18.6" - sources."@babel/helpers-7.19.0" + sources."@babel/helpers-7.20.6" sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.19.3" - sources."@babel/plugin-transform-destructuring-7.18.13" - sources."@babel/plugin-transform-parameters-7.18.8" + sources."@babel/parser-7.20.5" + sources."@babel/plugin-transform-destructuring-7.20.2" + sources."@babel/plugin-transform-parameters-7.20.5" sources."@babel/plugin-transform-shorthand-properties-7.18.6" sources."@babel/template-7.18.10" - sources."@babel/traverse-7.19.3" - sources."@babel/types-7.19.3" + sources."@babel/traverse-7.20.5" + sources."@babel/types-7.20.5" sources."@hapi/hoek-9.3.0" sources."@hapi/topo-5.1.0" sources."@jridgewell/gen-mapping-0.1.1" sources."@jridgewell/resolve-uri-3.1.0" sources."@jridgewell/set-array-1.1.2" sources."@jridgewell/sourcemap-codec-1.4.14" - sources."@jridgewell/trace-mapping-0.3.15" + sources."@jridgewell/trace-mapping-0.3.17" sources."@mongodb-js/devtools-connect-1.4.3" - sources."@mongosh/arg-parser-1.6.0" - (sources."@mongosh/async-rewriter2-1.6.0" // { + sources."@mongodb-js/mongodb-constants-0.1.4" + sources."@mongosh/arg-parser-1.6.1" + (sources."@mongosh/async-rewriter2-1.6.1" // { dependencies = [ sources."@babel/core-7.16.12" sources."semver-6.3.0" ]; }) - sources."@mongosh/autocomplete-1.6.0" - sources."@mongosh/cli-repl-1.6.0" - sources."@mongosh/editor-1.6.0" - sources."@mongosh/errors-1.6.0" - sources."@mongosh/history-1.6.0" - sources."@mongosh/i18n-1.6.0" - sources."@mongosh/js-multiline-to-singleline-1.6.0" - sources."@mongosh/logging-1.6.0" - sources."@mongosh/service-provider-core-1.6.0" - sources."@mongosh/service-provider-server-1.6.0" - sources."@mongosh/shell-api-1.6.0" - sources."@mongosh/shell-evaluator-1.6.0" - (sources."@mongosh/snippet-manager-1.6.0" // { + sources."@mongosh/autocomplete-1.6.1" + sources."@mongosh/cli-repl-1.6.1" + sources."@mongosh/editor-1.6.1" + sources."@mongosh/errors-1.6.1" + sources."@mongosh/history-1.6.1" + sources."@mongosh/i18n-1.6.1" + sources."@mongosh/js-multiline-to-singleline-1.6.1" + sources."@mongosh/logging-1.6.1" + sources."@mongosh/service-provider-core-1.6.1" + sources."@mongosh/service-provider-server-1.6.1" + sources."@mongosh/shell-api-1.6.1" + sources."@mongosh/shell-evaluator-1.6.1" + (sources."@mongosh/snippet-manager-1.6.1" // { dependencies = [ sources."escape-string-regexp-4.0.0" ]; }) - sources."@mongosh/types-1.6.0" + sources."@mongosh/types-1.6.1" sources."@segment/loosely-validate-event-2.0.0" sources."@sideway/address-4.1.4" sources."@sideway/formula-3.0.0" sources."@sideway/pinpoint-2.0.0" - sources."@types/babel__core-7.1.19" + sources."@types/babel__core-7.1.20" sources."@types/babel__generator-7.6.4" sources."@types/babel__template-7.4.1" - sources."@types/babel__traverse-7.18.2" - sources."@types/chai-4.3.3" - sources."@types/node-18.7.23" + sources."@types/babel__traverse-7.18.3" + sources."@types/chai-4.3.4" + sources."@types/node-18.11.12" sources."@types/sinon-10.0.13" - sources."@types/sinon-chai-3.2.8" + sources."@types/sinon-chai-3.2.9" sources."@types/sinonjs__fake-timers-8.1.2" sources."@types/webidl-conversions-7.0.0" sources."@types/whatwg-url-8.2.2" sources."abbrev-1.1.1" - sources."acorn-7.4.1" - sources."acorn-class-fields-0.3.7" + sources."acorn-8.8.1" + sources."acorn-class-fields-1.0.0" sources."acorn-numeric-separator-0.3.6" - sources."acorn-private-class-elements-0.2.7" - sources."acorn-private-methods-0.3.3" - sources."acorn-static-class-features-0.2.4" + sources."acorn-private-class-elements-1.0.0" + sources."acorn-private-methods-1.0.0" + sources."acorn-static-class-features-1.0.0" sources."analytics-node-5.2.0" sources."ansi-escape-sequences-5.1.2" sources."ansi-regex-5.0.1" @@ -2044,7 +2063,7 @@ in sources."browserslist-4.21.4" sources."bson-4.7.0" sources."buffer-5.7.1" - sources."caniuse-lite-1.0.30001412" + sources."caniuse-lite-1.0.30001439" sources."chalk-2.4.2" sources."charenc-0.0.2" sources."chownr-2.0.0" @@ -2053,17 +2072,16 @@ in sources."commander-2.20.3" sources."component-type-1.2.1" sources."config-chain-1.1.13" - sources."convert-source-map-1.8.0" + sources."convert-source-map-1.9.0" sources."cross-spawn-7.0.3" sources."crypt-0.0.2" sources."debug-4.3.4" - sources."denque-2.1.0" (sources."editorconfig-0.15.3" // { dependencies = [ sources."semver-5.7.1" ]; }) - sources."electron-to-chromium-1.4.267" + sources."electron-to-chromium-1.4.284" (sources."emphasize-3.0.0" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -2074,12 +2092,18 @@ in sources."supports-color-7.2.0" ]; }) + sources."encoding-0.1.13" sources."escalade-3.1.1" sources."escape-string-regexp-1.0.5" sources."fault-1.0.4" sources."follow-redirects-1.15.2" sources."format-0.2.2" - sources."fs-minipass-2.1.0" + (sources."fs-minipass-2.1.0" // { + dependencies = [ + sources."minipass-3.3.6" + sources."yallist-4.0.0" + ]; + }) sources."fs.realpath-1.0.0" sources."gensync-1.0.0-beta.2" sources."glob-8.0.3" @@ -2088,18 +2112,19 @@ in sources."has-flag-3.0.0" sources."highlight.js-9.12.0" sources."hijack-stream-1.0.0" + sources."iconv-lite-0.6.3" sources."ieee754-1.2.1" sources."inflight-1.0.6" sources."inherits-2.0.4" sources."ini-1.3.8" sources."ip-2.0.0" sources."is-buffer-1.1.6" - sources."is-recoverable-error-1.0.2" + sources."is-recoverable-error-1.0.3" sources."is-retry-allowed-1.2.0" sources."isexe-2.0.0" - sources."joi-17.6.1" + sources."joi-17.7.0" sources."join-component-1.1.0" - sources."js-beautify-1.14.6" + sources."js-beautify-1.14.7" sources."js-tokens-4.0.0" sources."js-yaml-4.1.0" sources."jsesc-2.5.2" @@ -2110,22 +2135,22 @@ in sources."lru-cache-4.1.5" sources."md5-2.3.0" sources."memory-pager-1.5.0" - sources."minimatch-5.1.0" - (sources."minipass-3.3.5" // { + sources."minimatch-5.1.1" + (sources."minipass-4.0.0" // { dependencies = [ sources."yallist-4.0.0" ]; }) (sources."minizlib-2.1.2" // { dependencies = [ + sources."minipass-3.3.6" sources."yallist-4.0.0" ]; }) sources."mkdirp-1.0.4" - sources."mongodb-4.10.0" - sources."mongodb-ace-autocompleter-0.11.1" + sources."mongodb-4.12.1" sources."mongodb-build-info-1.4.0" - (sources."mongodb-connection-string-url-2.5.3" // { + (sources."mongodb-connection-string-url-2.6.0" // { dependencies = [ sources."tr46-3.0.0" sources."webidl-conversions-7.0.0" @@ -2162,9 +2187,9 @@ in sources."punycode-2.1.1" sources."remove-array-items-1.1.1" sources."remove-trailing-slash-0.1.1" - sources."safe-buffer-5.1.2" + sources."safer-buffer-2.1.2" sources."saslprep-git+https://github.com/mongodb-js/saslprep#v1.0.4" - (sources."semver-7.3.7" // { + (sources."semver-7.3.8" // { dependencies = [ sources."lru-cache-6.0.0" sources."yallist-4.0.0" @@ -2174,13 +2199,13 @@ in sources."shebang-regex-3.0.0" sources."sigmund-1.0.1" sources."smart-buffer-4.2.0" - sources."socks-2.7.0" + sources."socks-2.7.1" sources."source-map-0.5.7" sources."sparse-bitfield-3.0.3" sources."strip-ansi-6.0.1" sources."supports-color-5.5.0" sources."system-ca-1.0.2" - (sources."tar-6.1.11" // { + (sources."tar-6.1.13" // { dependencies = [ sources."yallist-4.0.0" ]; @@ -2188,7 +2213,7 @@ in sources."text-table-0.2.0" sources."to-fast-properties-2.0.0" sources."tr46-0.0.3" - sources."update-browserslist-db-1.0.9" + sources."update-browserslist-db-1.0.10" sources."uuid-8.3.2" sources."webidl-conversions-3.0.1" sources."whatwg-url-5.0.0" diff --git a/third_party/nixpkgs/pkgs/development/tools/nasmfmt/default.nix b/third_party/nixpkgs/pkgs/development/tools/nasmfmt/default.nix index fb727e0f51..bb94e8f8ee 100644 --- a/third_party/nixpkgs/pkgs/development/tools/nasmfmt/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/nasmfmt/default.nix @@ -1,22 +1,27 @@ -{ lib, buildGoPackage, fetchFromGitHub, go }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { +buildGoModule rec { pname = "nasmfmt"; - version = "unstable-2021-04-24"; + version = "unstable-2022-09-15"; src = fetchFromGitHub { owner = "yamnikov-oleg"; repo = "nasmfmt"; - rev = "efba220c5252eb717f080d266dcc8304efdeab40"; - sha256 = "sha256-snhXF+IP0qzl43rKQ0Ugfo1zv3RyNfjxnMpjZEBgPQg="; + rev = "127dbe8e72376c67d7dff89010ccfb49fc7b533e"; + hash = "sha256-1c7ZOdoM0/Us7cnTT3sds2P5pcCedrCfl0GqQBnf9Rk="; }; - goPackagePath = "github.com/yamnikov-oleg/nasmfmt"; + vendorHash = "sha256-pQpattmS9VmO3ZIQUFn66az8GSmB4IvYhTTCFn6SUmo="; + + preBuild = '' + cp ${./go.mod} go.mod + ''; + + ldflags = [ "-s" "-w" ]; meta = with lib; { description = "Formatter for NASM source files"; homepage = "https://github.com/yamnikov-oleg/nasmfmt"; - platforms = go.meta.platforms; license = licenses.mit; maintainers = with maintainers; [ ckie ]; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/nasmfmt/go.mod b/third_party/nixpkgs/pkgs/development/tools/nasmfmt/go.mod new file mode 100644 index 0000000000..0dfb1521c9 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/nasmfmt/go.mod @@ -0,0 +1,3 @@ +module github.com/yamnikov-oleg/nasmfmt + +go 1.18 diff --git a/third_party/nixpkgs/pkgs/development/tools/norminette/default.nix b/third_party/nixpkgs/pkgs/development/tools/norminette/default.nix new file mode 100644 index 0000000000..5709fa0f46 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/norminette/default.nix @@ -0,0 +1,31 @@ +{ lib +, python3Packages +, fetchFromGitHub +}: + +python3Packages.buildPythonApplication rec { + pname = "norminette"; + version = "3.3.51"; + + src = fetchFromGitHub { + owner = "42School"; + repo = pname; + rev = version; + hash = "sha256-JpWziUKZPOD+AwiYeHR7e0B9l3XKNNp+XQkZEvynKGY="; + }; + + checkInputs = with python3Packages; [ + pytestCheckHook + ]; + + preCheck = '' + export PYTHONPATH=norminette:$PYTHONPATH + ''; + + meta = with lib; { + description = "Open source norminette to apply 42's norme to C files"; + homepage = "https://github.com/42School/norminette"; + license = licenses.mit; + maintainers = with maintainers; [ wegank ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/tools/ocaml/omake/default.nix b/third_party/nixpkgs/pkgs/development/tools/ocaml/omake/default.nix index bcfd86a2d4..f6c7955c68 100644 --- a/third_party/nixpkgs/pkgs/development/tools/ocaml/omake/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/ocaml/omake/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "omake"; - version = "0.10.3"; + version = "0.10.5"; src = fetchurl { url = "http://download.camlcity.org/download/${pname}-${version}.tar.gz"; - sha256 = "07bdg1h5i7qnlv9xq81ad5hfypl10hxm771h4rjyl5cn8plhfcgz"; + sha256 = "sha256-VOFq2KLBbmZCRgHzfpD7p0iyF8yU1tTbyvTiOcpm98Q="; }; buildInputs = [ ocaml ncurses ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/ocaml/opam2json/default.nix b/third_party/nixpkgs/pkgs/development/tools/ocaml/opam2json/default.nix index 198a5f575e..a3ca535d3f 100644 --- a/third_party/nixpkgs/pkgs/development/tools/ocaml/opam2json/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/ocaml/opam2json/default.nix @@ -1,13 +1,13 @@ { lib, stdenv, fetchFromGitHub, opam-installer, ocamlPackages }: stdenv.mkDerivation rec { pname = "opam2json"; - version = "0.2"; + version = "0.4"; src = fetchFromGitHub { owner = "tweag"; repo = pname; rev = "v${version}"; - sha256 = "fe8bm/V/4r2iNxgbitT2sXBqDHQ0GBSnSUSBg/1aXoI="; + sha256 = "sha256-5pXfbUfpVABtKbii6aaI2EdAZTjHJ2QntEf0QD2O5AM="; }; buildInputs = with ocamlPackages; [ yojson opam-file-format cmdliner ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/okteto/default.nix b/third_party/nixpkgs/pkgs/development/tools/okteto/default.nix index e0313950eb..14b0ce8b92 100644 --- a/third_party/nixpkgs/pkgs/development/tools/okteto/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/okteto/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "okteto"; - version = "2.9.1"; + version = "2.10.3"; src = fetchFromGitHub { owner = "okteto"; repo = "okteto"; rev = version; - hash = "sha256-kdYuo+xtGvL+PGhDbW5jL3m0jsakxcZ1DE2i3KbmMQc="; + hash = "sha256-6dpEWODqxafMLzUzJgTI9y1nV67GyUihbQB6UHAYStY="; }; - vendorHash = "sha256-/oR8R0/GC6cgCqXinCRH5x93qgRPeQmxHgZZGshrDr4="; + vendorHash = "sha256-Yi+4fGCHLH/kA4DuPI2uQ/27xhMd4cPFkTWlI6Bc13A="; postPatch = '' # Disable some tests that need file system & network access. diff --git a/third_party/nixpkgs/pkgs/development/tools/omnisharp-roslyn/default.nix b/third_party/nixpkgs/pkgs/development/tools/omnisharp-roslyn/default.nix index 88e7fa690d..0fc9952b59 100644 --- a/third_party/nixpkgs/pkgs/development/tools/omnisharp-roslyn/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/omnisharp-roslyn/default.nix @@ -30,7 +30,7 @@ let finalPackage = buildDotnetModule rec { ]; dotnetInstallFlags = [ "--framework net6.0" ]; - dotnetBuildFlags = [ "--framework net6.0" ]; + dotnetBuildFlags = [ "--framework net6.0" "--no-self-contained" ]; dotnetFlags = [ # These flags are set by the cake build. "-property:PackageVersion=${version}" diff --git a/third_party/nixpkgs/pkgs/development/tools/open-policy-agent/default.nix b/third_party/nixpkgs/pkgs/development/tools/open-policy-agent/default.nix index fcf749a988..f7f0eca56c 100644 --- a/third_party/nixpkgs/pkgs/development/tools/open-policy-agent/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/open-policy-agent/default.nix @@ -11,13 +11,13 @@ assert enableWasmEval && stdenv.isDarwin -> builtins.throw "building with wasm o buildGoModule rec { pname = "open-policy-agent"; - version = "0.47.3"; + version = "0.47.4"; src = fetchFromGitHub { owner = "open-policy-agent"; repo = "opa"; rev = "v${version}"; - sha256 = "sha256-c82v/4+HdBLNsJM1kO6A6rfywU4J7a3h5LW/T731vxw="; + sha256 = "sha256-EHDSil077g/K8XCWQ9Pry/oyh0Bs3ckS/5Co1z/+Yes="; }; vendorSha256 = null; diff --git a/third_party/nixpkgs/pkgs/development/tools/operator-sdk/default.nix b/third_party/nixpkgs/pkgs/development/tools/operator-sdk/default.nix index 117491d3ba..b1d8e5065f 100644 --- a/third_party/nixpkgs/pkgs/development/tools/operator-sdk/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/operator-sdk/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "operator-sdk"; - version = "1.25.3"; + version = "1.26.0"; src = fetchFromGitHub { owner = "operator-framework"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-f+FbmkCdM5Ub/nbq5Z8HnZ1KexGV59U/zPLpOkfs200="; + hash = "sha256-hIJTdTZ24+VwF1M/RvKcnQRzZga0nsjlTTUFYxZn0lo="; }; vendorHash = "sha256-1Vz+SIrNULajDqzZt53+o9wv1zLPBvKrO28BTqS4VbM="; diff --git a/third_party/nixpkgs/pkgs/development/tools/package-project-cmake/default.nix b/third_party/nixpkgs/pkgs/development/tools/package-project-cmake/default.nix new file mode 100644 index 0000000000..3636f4e041 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/package-project-cmake/default.nix @@ -0,0 +1,45 @@ +{ lib +, stdenvNoCC +, fetchFromGitHub +}: + +stdenvNoCC.mkDerivation (finalAttrs: { + pname = "package-project-cmake"; + version = "1.10.0"; + + src = fetchFromGitHub { + owner = "TheLartians"; + repo = "PackageProject.cmake"; + rev = "v${finalAttrs.version}"; + hash = "sha256-tDjWknwqN8NLx6GX16WOn0JUDAyaGU9HA7fTsHNLx9s="; + }; + + dontConfigure = true; + dontBuild = true; + + installPhase = '' + runHook preInstall + + mkdir -p $out/share/{,doc/}package-project-cmake + install -Dm644 CMakeLists.txt $out/share/package-project-cmake/ + install -Dm644 README.md $out/share/doc/package-project-cmake/ + + runHook postInstall + ''; + + meta = with lib; { + homepage = "https://github.com/TheLartians/PackageProject.cmake"; + description = "A CMake script for packaging C/C++ projects"; + longDescription = '' + Help other developers use your project. A CMake script for packaging + C/C++ projects for simple project installation while employing + best-practices for maximum compatibility. Creating installable + CMake scripts always requires a large amount of boilerplate code + to get things working. This small script should simplify the CMake + packaging process into a single, easy-to-use command. + ''; + license = licenses.mit; + maintainers = with maintainers; [ ken-matsui ]; + platforms = platforms.all; + }; +}) diff --git a/third_party/nixpkgs/pkgs/development/tools/parsing/re2c/default.nix b/third_party/nixpkgs/pkgs/development/tools/parsing/re2c/default.nix index 02be14908e..09a955f965 100644 --- a/third_party/nixpkgs/pkgs/development/tools/parsing/re2c/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/parsing/re2c/default.nix @@ -35,9 +35,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; tests = { inherit ninja php spamassassin; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/parsing/tree-sitter/update.nix b/third_party/nixpkgs/pkgs/development/tools/parsing/tree-sitter/update.nix index 92a755e4da..5283c7c6c3 100644 --- a/third_party/nixpkgs/pkgs/development/tools/parsing/tree-sitter/update.nix +++ b/third_party/nixpkgs/pkgs/development/tools/parsing/tree-sitter/update.nix @@ -375,19 +375,7 @@ let knownTreeSitterOrgGrammarRepos); in - mergeAttrsUnique otherGrammars treeSitterOrgaGrammars; - - # TODO: move to lib - mergeAttrsUnique = left: right: - let intersect = lib.intersectLists (lib.attrNames left) (lib.attrNames right); in - assert - lib.assertMsg (intersect == [ ]) - (lib.concatStringsSep "\n" [ - "mergeAttrsUnique: keys in attrset overlapping:" - "left: ${lib.generators.toPretty {} (lib.getAttrs intersect left)}" - "right: ${lib.generators.toPretty {} (lib.getAttrs intersect right)}" - ]); - left // right; + lib.attrsets.unionOfDisjoint otherGrammars treeSitterOrgaGrammars; diff --git a/third_party/nixpkgs/pkgs/development/tools/poac/default.nix b/third_party/nixpkgs/pkgs/development/tools/poac/default.nix new file mode 100644 index 0000000000..335b5cd17b --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/poac/default.nix @@ -0,0 +1,124 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +, cpm-cmake +, git +, cacert +, boost179 +, fmt_8 +, icu +, libarchive +, libgit2 +, lz4 +, ninja +, openssl_3 +, spdlog +}: + +let + git2Cpp = fetchFromGitHub { + owner = "ken-matsui"; + repo = "git2-cpp"; + rev = "v0.1.0-alpha.1"; + sha256 = "sha256-Ub0wrBK5oMfWGv+kpq/W1PN3yzpcfg+XWRFF/lV9VCY="; + }; + + glob = fetchFromGitHub { + owner = "p-ranav"; + repo = "glob"; + rev = "v0.0.1"; + sha256 = "sha256-2y+a7YFBiYX8wbwCCWw1Cm+SFoXGB3ZxLPi/QdZhcdw="; + }; + + packageProjectCMake = fetchFromGitHub { + owner = "TheLartians"; + repo = "PackageProject.cmake"; + rev = "v1.3"; + sha256 = "sha256-ZktftDrPo+JhBt0XKJekv0cyxIagvcgMcXZOBd4RtKs="; + }; + + mitamaCppResult = fetchFromGitHub { + owner = "LoliGothick"; + repo = "mitama-cpp-result"; + rev = "v9.3.0"; + sha256 = "sha256-CWYVPpmPIZZTsqXKh+Ft3SlQ4C9yjUof1mJ8Acn5kmM="; + }; + + structopt = fetchFromGitHub { + owner = "p-ranav"; + repo = "structopt"; + rev = "e9722d3c2b52cf751ebc1911b93d9649c4e365cc"; + sha256 = "sha256-jIfKUyY2QQ2/donywwlz65PY8u7xODGoG6SlNtUhwkg="; + }; + + toml11 = fetchFromGitHub { + owner = "ToruNiina"; + repo = "toml11"; + rev = "9086b1114f39a8fb10d08ca704771c2f9f247d02"; + sha256 = "sha256-fHUElHO4ckNQq7Q88GdbHGxfaAvWoWtGB0eD9y2MnLo="; + }; +in +stdenv.mkDerivation rec { + pname = "poac"; + version = "0.4.1"; + + src = fetchFromGitHub { + owner = "poacpm"; + repo = pname; + rev = version; + sha256 = "sha256-jXYPeI/rVuTr7OYV5sMgNr+U1OfN0XZtun6mihtlErY="; + }; + + preConfigure = '' + mkdir -p ${placeholder "out"}/share/cpm + cp ${cpm-cmake}/share/cpm/CPM.cmake ${placeholder "out"}/share/cpm/CPM_0.35.1.cmake + ''; + + cmakeFlags = [ + "-DCPM_USE_LOCAL_PACKAGES=ON" + "-DCPM_SOURCE_CACHE=${placeholder "out"}/share" + "-DFETCHCONTENT_SOURCE_DIR_FMT=${fmt_8}" + "-DFETCHCONTENT_SOURCE_DIR_GIT2-CPP=${git2Cpp}" + "-DFETCHCONTENT_SOURCE_DIR_GLOB=${glob}" + "-DFETCHCONTENT_SOURCE_DIR_PACKAGEPROJECT.CMAKE=${packageProjectCMake}" + "-DFETCHCONTENT_SOURCE_DIR_MITAMA-CPP-RESULT=${mitamaCppResult}" + "-DFETCHCONTENT_SOURCE_DIR_NINJA=${ninja.src}" + "-DFETCHCONTENT_SOURCE_DIR_STRUCTOPT=${structopt}" + "-DFETCHCONTENT_SOURCE_DIR_TOML11=${toml11}" + ]; + + nativeBuildInputs = [ cmake git cacert ]; + buildInputs = [ + (boost179.override { + enableShared = stdenv.isDarwin; + enableStatic = !stdenv.isDarwin; + }) + fmt_8 + git2Cpp + glob + packageProjectCMake + mitamaCppResult + ninja + structopt + toml11 + icu + libarchive + libgit2 + lz4 + openssl_3 + spdlog + ]; + + meta = with lib; { + homepage = "https://poac.pm"; + description = "Package Manager for C++"; + license = licenses.asl20; + maintainers = with maintainers; [ ken-matsui ]; + platforms = platforms.unix; + # https://github.com/NixOS/nixpkgs/pull/189712#issuecomment-1237791234 + broken = (stdenv.isLinux && stdenv.isAarch64) + # error: excess elements in scalar initializer on std::aligned_alloc + || (stdenv.isDarwin && stdenv.isx86_64); + }; +} diff --git a/third_party/nixpkgs/pkgs/development/tools/poetry2nix/poetry2nix/default.nix b/third_party/nixpkgs/pkgs/development/tools/poetry2nix/poetry2nix/default.nix index 87a928000c..4de0b54ac1 100644 --- a/third_party/nixpkgs/pkgs/development/tools/poetry2nix/poetry2nix/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/poetry2nix/poetry2nix/default.nix @@ -482,7 +482,7 @@ lib.makeScope pkgs.newScope (self: { /* The default list of poetry2nix override overlays - Can be overriden by calling defaultPoetryOverrides.overrideOverlay which takes an overlay function + Can be overridden by calling defaultPoetryOverrides.overrideOverlay which takes an overlay function */ defaultPoetryOverrides = self.mkDefaultPoetryOverrides (import ./overrides { inherit pkgs lib poetryLib; }); diff --git a/third_party/nixpkgs/pkgs/development/tools/prospector/default.nix b/third_party/nixpkgs/pkgs/development/tools/prospector/default.nix index d2855861dc..95b5512c6f 100644 --- a/third_party/nixpkgs/pkgs/development/tools/prospector/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/prospector/default.nix @@ -7,29 +7,34 @@ let setoptconf-tmp = python3.pkgs.callPackage ./setoptconf.nix { }; in -with python3.pkgs; - -buildPythonApplication rec { +python3.pkgs.buildPythonApplication rec { pname = "prospector"; - version = "1.7.7"; + version = "1.8.3"; format = "pyproject"; - disabled = pythonOlder "3.7"; - src = fetchFromGitHub { owner = "PyCQA"; repo = pname; - rev = version; - hash = "sha256-sbPZmVeJtNphtjuZEfKcUgty9bJ3E/2Ya9RuX3u/XEs="; + rev = "refs/tags/v${version}"; + hash = "sha256-R3Sc4Qx6bht+XJhNj+fy32akzDOgSDF5LP3WE1qEyms="; }; - nativeBuildInputs = [ - poetry-core + pythonRelaxDeps = [ + "pyflakes" + "pep8-naming" + "flake8" ]; - propagatedBuildInputs = [ + nativeBuildInputs = with python3.pkgs; [ + poetry-core + pythonRelaxDepsHook + ]; + + propagatedBuildInputs = with python3.pkgs; [ bandit dodgy + flake8 + gitpython mccabe mypy pep8-naming @@ -50,25 +55,24 @@ buildPythonApplication rec { vulture ]; - checkInputs = [ + checkInputs = with python3.pkgs; [ pytestCheckHook ]; - postPatch = '' - substituteInPlace pyproject.toml \ - --replace 'requirements-detector = "^0.7"' 'requirements-detector = "*"' \ - --replace 'pep8-naming = ">=0.3.3,<=0.10.0"' 'pep8-naming = "*"' \ - --replace 'mccabe = "^0.6.0"' 'mccabe = "*"' \ - --replace 'pycodestyle = ">=2.6.0,<2.9.0"' 'pycodestyle = "*"' - ''; - pythonImportsCheck = [ "prospector" ]; + disabledTestPaths = [ + # distutils.errors.DistutilsArgError: no commands supplied + "tests/tools/pyroma/test_pyroma_tool.py" + ]; + + meta = with lib; { description = "Tool to analyse Python code and output information about errors, potential problems, convention violations and complexity"; homepage = "https://github.com/PyCQA/prospector"; + changelog = "https://github.com/PyCQA/prospector/blob/v${version}/CHANGELOG.rst"; license = licenses.gpl2Plus; maintainers = with maintainers; [ kamadorueda ]; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/protoc-gen-connect-go/default.nix b/third_party/nixpkgs/pkgs/development/tools/protoc-gen-connect-go/default.nix index c29c8b0560..a968c26ff5 100644 --- a/third_party/nixpkgs/pkgs/development/tools/protoc-gen-connect-go/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/protoc-gen-connect-go/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "protoc-gen-connect-go"; - version = "1.3.1"; + version = "1.4.1"; src = fetchFromGitHub { owner = "bufbuild"; repo = "connect-go"; rev = "refs/tags/v${version}"; - hash = "sha256-PRJqH+uBcF9SP6ZFcZfLfqJe4LSAbhFrcdBFRhiVTGM="; + hash = "sha256-9dLILgDolHgQx33dAtYT3RJ0scWUVh52z+2Fh6FS+K4="; }; vendorHash = "sha256-Bh2JCWTaML/QU/sLBsxLKMzzH++K22BTGusfcVW2GBw="; diff --git a/third_party/nixpkgs/pkgs/development/tools/pulumictl/default.nix b/third_party/nixpkgs/pkgs/development/tools/pulumictl/default.nix index e62442c05f..a42da5f105 100644 --- a/third_party/nixpkgs/pkgs/development/tools/pulumictl/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/pulumictl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "pulumictl"; - version = "0.0.32"; + version = "0.0.38"; src = fetchFromGitHub { owner = "pulumi"; repo = "pulumictl"; rev = "v${version}"; - sha256 = "sha256-CZ0DnQUnyj8aoesFymc+Uhv+3vdQhdxb2YHElAyqGWE="; + sha256 = "sha256-j7wuzyGko3agDO7L8MUaAegjE4yj4KzQEcxWLY39BhQ="; }; - vendorSha256 = "sha256-xalfnLc6bPBvm2B42+FzpgrOH541HMWmNHChveI792s="; + vendorSha256 = "sha256-WzfTS68YIpoZYbm6i0USxXyEyR4px+hrNRbsCTXdJsk="; ldflags = [ "-s" "-w" "-X=github.com/pulumi/pulumictl/pkg/version.Version=${src.rev}" diff --git a/third_party/nixpkgs/pkgs/development/tools/purescript/spago/default.nix b/third_party/nixpkgs/pkgs/development/tools/purescript/spago/default.nix index 51516ed5b2..8006147e2d 100644 --- a/third_party/nixpkgs/pkgs/development/tools/purescript/spago/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/purescript/spago/default.nix @@ -1,5 +1,4 @@ { haskell -, haskellPackages , lib # The following are only needed for the passthru.tests: @@ -12,14 +11,16 @@ let spago = - haskell.lib.compose.justStaticExecutables - (haskell.lib.compose.overrideCabal (oldAttrs: { - maintainers = (oldAttrs.maintainers or []) ++ [ - lib.maintainers.cdepillabout - ]; - changelog = - "https://github.com/purescript/spago/releases/tag/${oldAttrs.version}"; - }) haskellPackages.spago); + lib.pipe + haskell.packages.ghc90.spago + [ haskell.lib.compose.justStaticExecutables + (haskell.lib.compose.overrideCabal (oldAttrs: { + maintainers = (oldAttrs.maintainers or []) ++ [ lib.maintainers.cdepillabout ]; + changelog = "https://github.com/purescript/spago/releases/tag/${oldAttrs.version}"; + })) + haskell.lib.compose.unmarkBroken + haskell.lib.compose.doDistribute + ]; in spago.overrideAttrs (oldAttrs: { @@ -58,4 +59,3 @@ spago.overrideAttrs (oldAttrs: { ''; }; }) - diff --git a/third_party/nixpkgs/pkgs/development/tools/react-native-debugger/default.nix b/third_party/nixpkgs/pkgs/development/tools/react-native-debugger/default.nix index 967c554199..6909c59a92 100644 --- a/third_party/nixpkgs/pkgs/development/tools/react-native-debugger/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/react-native-debugger/default.nix @@ -1,5 +1,31 @@ -{ lib, stdenv, fetchurl, unzip, cairo, xorg, gdk-pixbuf, fontconfig, pango, gnome, atk, at-spi2-atk, at-spi2-core -, gtk3, glib, freetype, dbus, nss, nspr, alsa-lib, cups, expat, udev, makeDesktopItem +{ lib +, stdenv +, fetchurl +, unzip +, cairo +, xorg +, gdk-pixbuf +, fontconfig +, pango +, gnome +, atk +, at-spi2-atk +, at-spi2-core +, gtk3 +, glib +, freetype +, dbus +, nss +, nspr +, alsa-lib +, cups +, expat +, udev +, makeDesktopItem +, libdrm +, libxkbcommon +, mesa +, makeWrapper }: let @@ -22,6 +48,9 @@ let udev at-spi2-atk at-spi2-core + libdrm + libxkbcommon + mesa xorg.libX11 xorg.libXcursor @@ -36,7 +65,8 @@ let xorg.libXrender xorg.libXScrnSaver ]; -in stdenv.mkDerivation rec { +in +stdenv.mkDerivation rec { pname = "react-native-debugger"; version = "0.13.0"; src = fetchurl { @@ -44,7 +74,7 @@ in stdenv.mkDerivation rec { sha256 = "sha256-/uVXMVrVS7n4/mqz6IlKkk63hy67fn9KRjZ1wP5MHB0="; }; - nativeBuildInputs = [ unzip ]; + nativeBuildInputs = [ makeWrapper unzip ]; buildCommand = '' shopt -s extglob mkdir -p $out @@ -59,6 +89,9 @@ in stdenv.mkDerivation rec { --set-rpath ${rpath}:$out/lib \ $out/share/react-native-debugger + wrapProgram $out/share/react-native-debugger \ + --add-flags --no-sandbox + ln -s $out/share/react-native-debugger $out/bin/react-native-debugger install -Dm644 "${desktopItem}/share/applications/"* \ diff --git a/third_party/nixpkgs/pkgs/development/tools/renderdoc/default.nix b/third_party/nixpkgs/pkgs/development/tools/renderdoc/default.nix index 6a225b9b47..3858394ce3 100644 --- a/third_party/nixpkgs/pkgs/development/tools/renderdoc/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/renderdoc/default.nix @@ -82,9 +82,7 @@ mkDerivation rec { addOpenGLRunpath $out/lib/librenderdoc.so ''; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "A single-frame graphics debugger"; diff --git a/third_party/nixpkgs/pkgs/development/tools/ruff/default.nix b/third_party/nixpkgs/pkgs/development/tools/ruff/default.nix index 48fe3c1f9e..deb97ee1ba 100644 --- a/third_party/nixpkgs/pkgs/development/tools/ruff/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/ruff/default.nix @@ -2,28 +2,29 @@ , rustPlatform , fetchFromGitHub , stdenv -, CoreServices -, Security +, darwin }: rustPlatform.buildRustPackage rec { pname = "ruff"; - version = "0.0.183"; + version = "0.0.198"; src = fetchFromGitHub { owner = "charliermarsh"; repo = pname; rev = "v${version}"; - sha256 = "sha256-xZSPRSqtf62BSfNw3eJEvsxqGBpy/v5DKWz6mipjsAY="; + sha256 = "sha256-hXG3Iu9p678UYh4NrpaVoPj8CDdU7D3GB7BQHsyQHWg="; }; - cargoSha256 = "sha256-s7IQtfcRvcLgvzep0Ya6i7+OfFlQwFNG67SQe5D0/Ec="; + cargoSha256 = "sha256-uWdlbVV6IODK+iugut/S8/WJwa9rSIvenvaROeyLaR0="; buildInputs = lib.optionals stdenv.isDarwin [ - CoreServices - Security + darwin.apple_sdk.frameworks.CoreServices ]; + # building tests fails with `undefined symbols` + doCheck = false; + meta = with lib; { description = "An extremely fast Python linter"; homepage = "https://github.com/charliermarsh/ruff"; diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-bolero/Cargo.lock b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-bolero/Cargo.lock deleted file mode 100644 index a16bfbe9c2..0000000000 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-bolero/Cargo.lock +++ /dev/null @@ -1,751 +0,0 @@ -# This file is automatically @generated by Cargo. -# It is not intended for manual editing. -version = 3 - 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-[[package]] -name = "winapi-util" -version = "0.1.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "70ec6ce85bb158151cae5e5c87f95a8e97d2c0c4b001223f33a334e3ce5de178" -dependencies = [ - "winapi", -] - -[[package]] -name = "winapi-x86_64-pc-windows-gnu" -version = "0.4.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f" diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-bolero/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-bolero/default.nix index 5940459a5e..37f22bb925 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-bolero/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-bolero/default.nix @@ -1,25 +1,22 @@ -{ lib, fetchFromGitHub, rustPlatform, stdenv, libbfd, libopcodes, libunwind }: +{ lib, rustPlatform, fetchCrate, libbfd, libopcodes, libunwind }: rustPlatform.buildRustPackage rec { pname = "cargo-bolero"; - version = "0.6.2"; + version = "0.8.0"; - src = fetchFromGitHub { - owner = "camshaft"; - repo = "bolero"; - rev = "${pname}-v${version}"; - sha256 = "1p8g8av0l1qsmq09m0nwyyryk1v5bbah5izl4hf80ivi41mywkyi"; + src = fetchCrate { + inherit pname version; + sha256 = "sha256-j6fWCIXfVS5b3NZizhg9pI+kJkWlR1eGUSW9hJO1/mQ="; }; - cargoLock.lockFile = ./Cargo.lock; - postPatch = "cp ${./Cargo.lock} Cargo.lock"; + cargoSha256 = "sha256-ycvGw99CcE29axG9UWD0lkQp5kxD6Eguco5Fh9Vfj6E="; buildInputs = [ libbfd libopcodes libunwind ]; meta = with lib; { description = "Fuzzing and property testing front-end framework for Rust"; - homepage = "https://github.com/camshaft/cargo-bolero"; + homepage = "https://github.com/camshaft/bolero"; license = with licenses; [ mit ]; - maintainers = [ maintainers.ekleog ]; + maintainers = with maintainers; [ ekleog ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-chef/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-chef/default.nix new file mode 100644 index 0000000000..82aed4809c --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-chef/default.nix @@ -0,0 +1,20 @@ +{ lib, rustPlatform, fetchCrate }: + +rustPlatform.buildRustPackage rec { + pname = "cargo-chef"; + version = "0.1.50"; + + src = fetchCrate { + inherit pname version; + sha256 = "sha256-d467uk4UCtAKcpFYODxIhRrYoIOHzxhoaJVMA9ErRAw="; + }; + + cargoSha256 = "sha256-5xj4/uxuMhlqY1ncrMU1IFWdVB4ZjHVXg0ZbRXDvIak="; + + meta = with lib; { + description = "A cargo-subcommand to speed up Rust Docker builds using Docker layer caching"; + homepage = "https://github.com/LukeMathWalker/cargo-chef"; + license = licenses.mit; + maintainers = with maintainers; [ kkharji ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-cross/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-cross/default.nix index 7428e84fae..5e1b4c2a14 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-cross/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-cross/default.nix @@ -27,9 +27,7 @@ rustPlatform.buildRustPackage rec { ]; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-edit/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-edit/default.nix index 11886b06d2..f5ccafc481 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-edit/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-edit/default.nix @@ -10,16 +10,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-edit"; - version = "0.11.6"; + version = "0.11.7"; src = fetchFromGitHub { owner = "killercup"; repo = pname; rev = "v${version}"; - hash = "sha256-EGClr2HQ11bX6WTvu9ZxPo4hA0Q5Sl9t0Gw8/SltxDI="; + hash = "sha256-u0t/Zh427ZWN1wJ1LISEWa/2r0gAnpWUf8C8eLGA7wc="; }; - cargoSha256 = "sha256-Ph6W2RyNjVfnkon4YyAi4VvQWt/McKelUzlRD15Yysk="; + cargoSha256 = "sha256-hQvxcS3DXY4SZiEKQSST5GQ40BMNDKSkwi3AqQstJvc="; nativeBuildInputs = [ pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-expand/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-expand/default.nix index 07fb95f872..d087f0b856 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-expand/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-expand/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-expand"; - version = "1.0.35"; + version = "1.0.36"; src = fetchFromGitHub { owner = "dtolnay"; repo = pname; rev = version; - sha256 = "sha256-hJb4FLL3+AMNLL05eQc7Mkhp0KEGxmHg8/ETDoZiLV4="; + sha256 = "sha256-8h20Cnu72ychSdtKlAz6US0wXMIcn1ZUWMgF6a0K4uI="; }; - cargoSha256 = "sha256-wKVlmO2/ugAb7vUSIGMz0WGnjEVEsm459DV9FaM28Mk="; + cargoSha256 = "sha256-xIVoEIyp8NygfNu/aola1pM6KokjrPQ5v55eBc7zPZc="; buildInputs = lib.optional stdenv.isDarwin libiconv; diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-flamegraph/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-flamegraph/default.nix index 3355235f3f..adeee5c9c5 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-flamegraph/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-flamegraph/default.nix @@ -27,9 +27,7 @@ rustPlatform.buildRustPackage rec { --set-default PERF ${perf}/bin/perf ''; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "Easy flamegraphs for Rust projects and everything else, without Perl or pipes <3"; diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-hack/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-hack/default.nix index e17d16c4b5..85015e713d 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-hack/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-hack/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "cargo-hack"; - version = "0.5.24"; + version = "0.5.25"; src = fetchCrate { inherit pname version; - sha256 = "sha256-brzefn9Nfb4+OnO0gCH5mPbXDdqaFSoqB6phFPwQXoY="; + sha256 = "sha256-1X2/C9JNTuRWY9nke3c7S1x5HuomDs0Em+v0P1HU4aQ="; }; - cargoSha256 = "sha256-RPQgZoIPFxZGP3Bpwp/VdTYPi5+IdfY3Zy+rYnYev3g="; + cargoSha256 = "sha256-Ylo0HeIlXEJg6g93u4QMGTbzBtU2EpHW5BWIBDCX+EU="; # some necessary files are absent in the crate version doCheck = false; diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-limit/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-limit/default.nix index da5f019d66..67cd2ae525 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-limit/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-limit/default.nix @@ -22,9 +22,7 @@ rustPlatform.buildRustPackage rec { buildInputs = lib.optionals stdenv.isDarwin [ libiconv ]; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-llvm-lines/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-llvm-lines/default.nix index 79bbb5bb7b..6b34c2c337 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-llvm-lines/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-llvm-lines/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-llvm-lines"; - version = "0.4.22"; + version = "0.4.23"; src = fetchFromGitHub { owner = "dtolnay"; repo = pname; rev = version; - sha256 = "sha256-fQhYcY5b/KxDEbZws6IPq0EvVynWpQ8d1TJ2isTSwYQ="; + sha256 = "sha256-u3MvDiagCGD7WjagbVF+TtZ0ATe8WBT3xeyduxrXPi4="; }; - cargoSha256 = "sha256-aU+B/QrpKVtY/u53zS0q7/iNM0Z6xRMH3BPNmHd8Yps="; + cargoSha256 = "sha256-9oBnETZqJV35FEw6NImy6cqfVOVE5EHPNVGajE2UT10="; meta = with lib; { description = "Count the number of lines of LLVM IR across all instantiations of a generic function"; diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-mommy/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-mommy/default.nix new file mode 100644 index 0000000000..b05282f4f7 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-mommy/default.nix @@ -0,0 +1,20 @@ +{ lib, rustPlatform, fetchCrate }: + +rustPlatform.buildRustPackage rec { + pname = "cargo-mommy"; + version = "0.1.1"; + + src = fetchCrate { + inherit pname version; + sha256 = "sha256-p1SAYUQu1HpYJ6TbLJ3lfA9VlKHvB7z5yiFXmTQOCXA="; + }; + + cargoSha256 = "sha256-5RidY+6EF23UNzz1suSdA4LL59FalipaJ+ISSsmiCXM="; + + meta = with lib; { + description = "Cargo wrapper that encourages you after running commands"; + homepage = "https://github.com/Gankra/cargo-mommy"; + license = with licenses; [ mit asl20 ]; + maintainers = with maintainers; [ GoldsteinE ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-msrv/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-msrv/default.nix index e3694b3108..55d57f1bfc 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-msrv/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-msrv/default.nix @@ -25,9 +25,7 @@ rustPlatform.buildRustPackage rec { cargoSha256 = "sha256-/Bspy94uIP/e4uJY8qo+UPK1tnPjglxiMWeYWx2qoHk="; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; # Integration tests fail diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-pgx/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-pgx/default.nix index 4ebbb79723..004b6ed275 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-pgx/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-pgx/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "cargo-pgx"; - version = "0.6.0"; + version = "0.6.1"; src = fetchCrate { inherit version pname; - sha256 = "sha256-CXOInyT0fY17e4iuGhUpR9EPd2M8jauR5TKpPlhTJoQ="; + sha256 = "sha256-O4eHVbJBudybsPab+zr2eXnfheREMqLAHAKm2GDbfrs="; }; - cargoSha256 = "sha256-RtPFFIuurSPMhGLcGLOu0em1biimVkTaAKP5EUPtQ9U="; + cargoSha256 = "sha256-MucGrA3qXgJOcT2LMNmoNOhQi8QA3LuqgZEHKycLCCo="; nativeBuildInputs = [ pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-semver-checks/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-semver-checks/default.nix index 19c487368e..ab86d41d7c 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-semver-checks/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-semver-checks/default.nix @@ -5,38 +5,38 @@ , libgit2 , openssl , stdenv -, Security +, darwin }: rustPlatform.buildRustPackage rec { pname = "cargo-semver-checks"; - version = "0.12.0"; + version = "0.14.0"; src = fetchFromGitHub { owner = "obi1kenobi"; - repo = "cargo-semver-check"; + repo = pname; rev = "v${version}"; - sha256 = "sha256-gB8W/u/Yb/rMMB+654N3Mj4QbTMWGK6cgQKM0lld/10="; + sha256 = "sha256-upGVWCK3gEPH6BZ7W410AnQPIWOCeD4sawQqPLRowfw="; }; - cargoSha256 = "sha256-ML4cTNtCvaLFkt1QdA34QvAGhrFTO90xw7fsUD2weqQ="; + cargoSha256 = "sha256-PYZe7OO/cevictnWGc+NHVpJXctU2XyejF8jPjSNp3M="; nativeBuildInputs = [ pkg-config ]; buildInputs = [ libgit2 openssl ] ++ lib.optionals stdenv.isDarwin [ - Security + darwin.apple_sdk.frameworks.Security ]; checkFlags = [ # requires nightly version of cargo-rustdoc - "--skip=adapter::tests" + "--skip=dump::tests" "--skip=query::tests" ]; meta = with lib; { description = "A tool to scan your Rust crate for semver violations"; - homepage = "https://github.com/obi1kenobi/cargo-semver-check"; - license = licenses.asl20; + homepage = "https://github.com/obi1kenobi/cargo-semver-checks"; + license = with licenses; [ mit /* or */ asl20 ]; maintainers = with maintainers; [ figsoda matthiasbeyer ]; }; } diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-show-asm/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-show-asm/default.nix index 243c23ee52..ae03097c8f 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-show-asm/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-show-asm/default.nix @@ -32,9 +32,7 @@ rustPlatform.buildRustPackage rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; tests = lib.optionalAttrs stdenv.hostPlatform.isx86_64 { test-basic-x86_64 = callPackage ./test-basic-x86_64.nix { }; }; diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-tally/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-tally/default.nix index 4129b30035..8fa00e11ef 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-tally/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-tally/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "cargo-tally"; - version = "1.0.18"; + version = "1.0.19"; src = fetchCrate { inherit pname version; - sha256 = "sha256-BlWPdZb85XaTGV6ZE3XRVKHJyXimfrezhRyqJVmCFMY="; + sha256 = "sha256-TlHb974Dtmz5qW+4L3BE6GQ3SbkwtIrZxE6FpJrgNdY="; }; - cargoSha256 = "sha256-1qtlsItLP8MdxebgktzTr3R4Kq+PBIAiHGaikbQ796E="; + cargoSha256 = "sha256-np1rln9tD+J4s410/Pv4/eKAxyzK8qtLoON86JR1T94="; buildInputs = lib.optionals stdenv.isDarwin (with darwin.apple_sdk_11_0.frameworks; [ DiskArbitration diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-tauri/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-tauri/default.nix index 45e4a2b2e7..9c863e09ef 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-tauri/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-tauri/default.nix @@ -11,20 +11,20 @@ rustPlatform.buildRustPackage rec { pname = "tauri"; - version = "1.2.2"; + version = "1.2.3"; src = fetchFromGitHub { owner = "tauri-apps"; repo = pname; rev = "tauri-v${version}"; - sha256 = "sha256-RBaIF9vWQwQAdqN3p3JS1WO6u3IMxi8CuCkrwQbd2gI="; + sha256 = "sha256-4v0ZlFBVBB+0xWbTRncVwELaZWLKyCmIceTfseXvS8s="; }; # Manually specify the sourceRoot since this crate depends on other crates in the workspace. Relevant info at # https://discourse.nixos.org/t/difficulty-using-buildrustpackage-with-a-src-containing-multiple-cargo-workspaces/10202 sourceRoot = "source/tooling/cli"; - cargoSha256 = "sha256-8sdCVOtPwIjW2x1yh1B0oybVi2kz3LQoK3OcaJvUsxQ="; + cargoSha256 = "sha256-Hp6+T2CN0CsXaGnCVqAYaOjZNDkmI+MXDfHIgbU1S0g="; buildInputs = [ glibc libsoup cairo gtk3 webkitgtk ]; nativeBuildInputs = [ pkg-config ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-valgrind/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-valgrind/default.nix index b21db0d620..af7abb9a1a 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-valgrind/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-valgrind/default.nix @@ -20,9 +20,7 @@ rustPlatform.buildRustPackage rec { cargoSha256 = "sha256-csSUe2qUIN2xKOMHWyM56FZyCwKPdfAI0NrFiDOtRiE="; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-wipe/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-wipe/default.nix index 9b7b4ef08f..c14f842a73 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-wipe/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-wipe/default.nix @@ -18,9 +18,7 @@ rustPlatform.buildRustPackage rec { cargoSha256 = "sha256-/cne7uTGyxgTRONWMEE5dPbPDnCxf+ZnYzYXRAeHJyQ="; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-zigbuild/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-zigbuild/default.nix index f0e7e4577e..496c8768ed 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/cargo-zigbuild/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo-zigbuild/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-zigbuild"; - version = "0.14.2"; + version = "0.14.3"; src = fetchFromGitHub { owner = "messense"; repo = pname; rev = "v${version}"; - sha256 = "sha256-koEKWtcpkxK2h562ZIjM0PvvLit7TMo03Ikg2SLMEWM="; + sha256 = "sha256-OHr+VCYt+w1VWv6XAfMZv0I7IZJ1m0UtErgMonGytns="; }; - cargoSha256 = "sha256-CAaSnnCL+F1av6UYj4QKMEEXSFIAKroBQxew4SO1oU8="; + cargoSha256 = "sha256-tOJNQLPWpCqHCFRk85PW91axUTljo8YoeWUpPrl8P4c="; nativeBuildInputs = [ makeWrapper ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/cargo2junit/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/cargo2junit/default.nix new file mode 100644 index 0000000000..17427e336c --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/rust/cargo2junit/default.nix @@ -0,0 +1,20 @@ +{ fetchCrate, lib, rustPlatform }: + +rustPlatform.buildRustPackage rec { + pname = "cargo2junit"; + version = "0.1.12"; + + src = fetchCrate { + inherit pname version; + sha256 = "sha256-wF1vDUVEume6aWzI5smTNlwc9WyZeTtUX416tYYrZPU="; + }; + + cargoSha256 = "sha256-GUCHWV+uPHZwhU4UhdXE2GHpeVnqbUTpfivA9Nh9MoY="; + + meta = with lib; { + description = "Converts cargo's json output (from stdin) to JUnit XML (to stdout)."; + homepage = "https://github.com/johnterickson/cargo2junit"; + license = licenses.mit; + maintainers = with maintainers; [ alekseysidorov ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/rust-analyzer/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/rust-analyzer/default.nix index 0cd55e1f82..32f29c5ef0 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/rust-analyzer/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/rust-analyzer/default.nix @@ -12,14 +12,14 @@ rustPlatform.buildRustPackage rec { pname = "rust-analyzer-unwrapped"; - version = "2022-12-12"; - cargoSha256 = "sha256-YTakd4qRwXUoxzFWXCj8l9nA3wjJtfVmKbhX9XlaEbE="; + version = "2022-12-19"; + cargoSha256 = "sha256-/Ep/YELl1eA6HzZ/a7pi2a1XSlYB36VZJJPLZKnx4J0="; src = fetchFromGitHub { owner = "rust-lang"; repo = "rust-analyzer"; rev = version; - sha256 = "sha256-QLKX/JhK+jRE61teK+Cr4f2KuAzgYuawStxOgJymqRg="; + sha256 = "sha256-sGZNmkUwHt7FmuwDyYjnTAyo8ZMkH9iOdCOyU+2Vcos="; }; cargoBuildFlags = [ "--bin" "rust-analyzer" "--bin" "rust-analyzer-proc-macro-srv" ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/svd2rust/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/svd2rust/default.nix index e05057a629..516fab607c 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/svd2rust/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/svd2rust/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "svd2rust"; - version = "0.27.2"; + version = "0.28.0"; src = fetchCrate { inherit pname version; - sha256 = "sha256-6HcJ9NPUPcVLZT8zpYxIPJ4UkqwaqPNWva8/wnaUrt8="; + sha256 = "sha256-/Pt0eKS6Rfrh18nb1lR/T+T+b73rmX4jmGIjbXJtcMA="; }; - cargoSha256 = "sha256-fsLRpRvdiZyOsxnfAc5xt63rLW5lwwQt+lxmZT7XIAc="; + cargoSha256 = "sha256-Vum7Ltq9h6BMXvIESO9jC2B775BZlCWmatazk1bavQs="; meta = with lib; { description = "Generate Rust register maps (`struct`s) from SVD files"; diff --git a/third_party/nixpkgs/pkgs/development/tools/rust/typeshare/default.nix b/third_party/nixpkgs/pkgs/development/tools/rust/typeshare/default.nix index 2dc405b851..6e96bf72bb 100644 --- a/third_party/nixpkgs/pkgs/development/tools/rust/typeshare/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/rust/typeshare/default.nix @@ -2,22 +2,18 @@ rustPlatform.buildRustPackage rec { pname = "typeshare"; - version = "1.0.0"; + version = "1.0.1"; src = fetchCrate { inherit version; pname = "typeshare-cli"; - sha256 = "sha256-KDmE5f9B2lNVbjdF8d81NTJIwpvPhsoLMA8w7iYIIl8="; + sha256 = "sha256-SbTI7170Oc1e09dv4TvUwByG3qkyAL5YXZ96NzI0FSI="; }; - cargoSha256 = "sha256-b983tSue9WHkPrcIhp5QSjwj+lESURUYueebjXUWMJY="; + cargoSha256 = "sha256-5EhXw2WcRJqCbdMvOtich9EYQqi0uwCH1a1XXIo8aAo="; buildFeatures = [ "go" ]; - postInstall = '' - ln -s $out/bin/typeshare{-cli,} - ''; - meta = with lib; { description = "Command Line Tool for generating language files with typeshare"; homepage = "https://github.com/1password/typeshare"; diff --git a/third_party/nixpkgs/pkgs/development/tools/sq/default.nix b/third_party/nixpkgs/pkgs/development/tools/sq/default.nix index 4e96594fcb..d150332ae6 100644 --- a/third_party/nixpkgs/pkgs/development/tools/sq/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/sq/default.nix @@ -1,24 +1,29 @@ { lib, buildGoModule, fetchFromGitHub, installShellFiles, testers, sq }: + buildGoModule rec { pname = "sq"; - version = "0.15.11"; + version = "0.18.2"; src = fetchFromGitHub { owner = "neilotoole"; repo = pname; rev = "v${version}"; - sha256 = "sha256-sYaQb7MFeTgJ/WPuCuMYjLcgmO/FhMGgOvY1HfGh2ag="; + sha256 = "sha256-x5NHMTyOZSGOnAUCRu1qZggU5m832TFrBTSNJU6DUKo="; }; - nativeBuildInputs = [ installShellFiles ]; + vendorSha256 = "sha256-IRuwX+VF0ltASTt/QKlZ3A00tgDhc9qpBfzhINp3HgQ="; - vendorSha256 = "sha256-P1NxcjRA0g9NK2EaEG5E9G2TywTp5uvHesQE7+EG4ag="; + proxyVendor = true; + + nativeBuildInputs = [ installShellFiles ]; # Some tests violates sandbox constraints. doCheck = false; ldflags = [ - "-s" "-w" "-X github.com/neilotoole/sq/cli/buildinfo.Version=${version}" + "-s" + "-w" + "-X=github.com/neilotoole/sq/cli/buildinfo.Version=${version}" ]; postInstall = '' diff --git a/third_party/nixpkgs/pkgs/development/tools/sshs/default.nix b/third_party/nixpkgs/pkgs/development/tools/sshs/default.nix index c3fa7ce5cb..804a6a0964 100644 --- a/third_party/nixpkgs/pkgs/development/tools/sshs/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/sshs/default.nix @@ -19,9 +19,7 @@ buildGoModule rec { ldflags = [ "-s" "-w" "-X github.com/quantumsheep/sshs/cmd.Version=${version}" ]; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "Terminal user interface for SSH"; diff --git a/third_party/nixpkgs/pkgs/development/tools/supabase-cli/default.nix b/third_party/nixpkgs/pkgs/development/tools/supabase-cli/default.nix new file mode 100644 index 0000000000..a5facfee82 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/supabase-cli/default.nix @@ -0,0 +1,46 @@ +{ lib +, buildGoModule +, fetchFromGitHub +, installShellFiles +, nix-update-script +}: + +buildGoModule rec { + pname = "supabase-cli"; + version = "1.27.7"; + + src = fetchFromGitHub { + owner = "supabase"; + repo = "cli"; + rev = "v${version}"; + sha256 = "sha256-3IHKFO/P5TdD8ujFUuJj0xZsJDIUSmKjy7j6BefPK58="; + }; + + vendorSha256 = "sha256-RO9dZP236Kt8SSpZFF7KRksrjgwiEkPxE5DIMUK69Kw="; + + ldflags = [ "-s" "-w" "-X" "github.com/supabase/cli/cmd.version=${version}" ]; + + doCheck = false; # tests are trying to connect to localhost + + nativeBuildInputs = [ installShellFiles ]; + + postInstall = '' + rm $out/bin/{codegen,docgen,listdep} + mv $out/bin/{cli,supabase} + + installShellCompletion --cmd supabase \ + --bash <($out/bin/supabase completion bash) \ + --fish <($out/bin/supabase completion fish) \ + --zsh <($out/bin/supabase completion zsh) + ''; + + passthru.updateScript = nix-update-script { }; + + meta = with lib; { + description = "A CLI for interacting with supabase"; + homepage = "https://github.com/supabase/cli"; + license = licenses.mit; + maintainers = with maintainers; [ gerschtli ]; + mainProgram = "supabase"; + }; +} diff --git a/third_party/nixpkgs/pkgs/development/tools/symfony-cli/default.nix b/third_party/nixpkgs/pkgs/development/tools/symfony-cli/default.nix index f42c4abd6c..ac541d8992 100644 --- a/third_party/nixpkgs/pkgs/development/tools/symfony-cli/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/symfony-cli/default.nix @@ -2,14 +2,14 @@ buildGoModule rec { pname = "symfony-cli"; - version = "5.4.19"; + version = "5.4.20"; vendorSha256 = "sha256-P5KEliTqj9kGYffhl014QK6qPY9gLG+bViOz4dtsQwA="; src = fetchFromGitHub { owner = "symfony-cli"; repo = "symfony-cli"; rev = "v${version}"; - sha256 = "sha256-GAsyI8I+tHFMV/LqwPx2ph+w3zaqKSn9vieVQcuO+y0="; + sha256 = "sha256-qtC7cNKKDxw/5umhRe1kAzl9SIHbTbxgW4fMuP37OjY="; }; ldflags = [ diff --git a/third_party/nixpkgs/pkgs/development/tools/tapview/default.nix b/third_party/nixpkgs/pkgs/development/tools/tapview/default.nix index 966df4bed6..19c1113c5c 100644 --- a/third_party/nixpkgs/pkgs/development/tools/tapview/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/tapview/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-inrxICNglZU/tup+YnHaDiVss32K2OXht/7f8lOZI4g="; }; - # Remove unecessary `echo` checks: `/bin/echo` fails, and `echo -n` works as expected. + # Remove unnecessary `echo` checks: `/bin/echo` fails, and `echo -n` works as expected. patches = [ ./dont_check_echo.patch ]; makeFlags = [ "prefix=$(out)" ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/uniffi-bindgen/default.nix b/third_party/nixpkgs/pkgs/development/tools/uniffi-bindgen/default.nix index 8511d3c249..194cb4ac17 100644 --- a/third_party/nixpkgs/pkgs/development/tools/uniffi-bindgen/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/uniffi-bindgen/default.nix @@ -11,14 +11,14 @@ rustPlatform.buildRustPackage rec { pname = "uniffi-bindgen"; - version = "0.21.0"; + version = "0.22.0"; src = fetchCrate { inherit pname version; - sha256 = "sha256-yVpxyYaFkX1HuFi4xcj45rsMbMIcdTHs9zfGvtcFdH8="; + sha256 = "sha256-cUJsfAlzdoGMeFcdXwdPU0JcruneY60pssJPkJtb5gs="; }; - cargoSha256 = "sha256-qn27aRVdD+/EWmCSF2t+CdMhtOknDCVnG9uDa2Rwf0A="; + cargoSha256 = "sha256-k5uIR5rO4T1Xsu50vdLxCgSsVkNcxXHT4MitnMZkY6g="; nativeBuildInputs = [ makeWrapper ]; @@ -32,9 +32,7 @@ rustPlatform.buildRustPackage rec { --suffix PATH : ${lib.strings.makeBinPath [ ktlint yapf rubocop rustfmt ] } ''; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "Toolkit for building cross-platform software components in Rust"; diff --git a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/.prettierignore b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/.prettierignore new file mode 100644 index 0000000000..3c3629e647 --- /dev/null +++ b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/.prettierignore @@ -0,0 +1 @@ +node_modules diff --git a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/bin/yarn2nix.js b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/bin/yarn2nix.js index d2152f9c5e..4e15cfc218 100755 --- a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/bin/yarn2nix.js +++ b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/bin/yarn2nix.js @@ -1,14 +1,14 @@ #!/usr/bin/env node -const fs = require('fs') -const lockfile = require('@yarnpkg/lockfile') -const { docopt } = require('docopt') -const deepEqual = require('deep-equal') -const R = require('ramda') +const fs = require("fs"); +const lockfile = require("@yarnpkg/lockfile"); +const { docopt } = require("docopt"); +const deepEqual = require("deep-equal"); +const R = require("ramda"); -const fixPkgAddMissingSha1 = require('../lib/fixPkgAddMissingSha1') -const mapObjIndexedReturnArray = require('../lib/mapObjIndexedReturnArray') -const generateNix = require('../lib/generateNix') +const fixPkgAddMissingSha1 = require("../lib/fixPkgAddMissingSha1"); +const mapObjIndexedReturnArray = require("../lib/mapObjIndexedReturnArray"); +const generateNix = require("../lib/generateNix"); const USAGE = ` Usage: yarn2nix [options] @@ -19,11 +19,11 @@ Options: --no-patch Don't patch the lockfile if hashes are missing --lockfile=FILE Specify path to the lockfile [default: ./yarn.lock]. --builtin-fetchgit Use builtin fetchGit for git dependencies to support on-the-fly generation of yarn.nix without an internet connection -` +`; -const options = docopt(USAGE) +const options = docopt(USAGE); -const data = fs.readFileSync(options['--lockfile'], 'utf8') +const data = fs.readFileSync(options["--lockfile"], "utf8"); // json example: @@ -45,10 +45,10 @@ const data = fs.readFileSync(options['--lockfile'], 'utf8') // } // } -const json = lockfile.parse(data) +const json = lockfile.parse(data); -if (json.type !== 'success') { - throw new Error('yarn.lock parse error') +if (json.type !== "success") { + throw new Error("yarn.lock parse error"); } // Check for missing hashes in the yarn.lock and patch if necessary @@ -56,35 +56,35 @@ if (json.type !== 'success') { let pkgs = R.pipe( mapObjIndexedReturnArray((value, key) => ({ ...value, - nameWithVersion: key, + nameWithVersion: key })), - R.uniqBy(R.prop('resolved')), -)(json.object) + R.uniqBy(R.prop("resolved")) +)(json.object); -;(async () => { - if (!options['--no-patch']) { - pkgs = await Promise.all(R.map(fixPkgAddMissingSha1, pkgs)) +(async () => { + if (!options["--no-patch"]) { + pkgs = await Promise.all(R.map(fixPkgAddMissingSha1, pkgs)); } - const origJson = lockfile.parse(data) + const origJson = lockfile.parse(data); if (!deepEqual(origJson, json)) { - console.error('found changes in the lockfile', options['--lockfile']) + console.error("found changes in the lockfile", options["--lockfile"]); - if (options['--no-patch']) { - console.error('...aborting') - process.exit(1) + if (options["--no-patch"]) { + console.error("...aborting"); + process.exit(1); } - fs.writeFileSync(options['--lockfile'], lockfile.stringify(json.object)) + fs.writeFileSync(options["--lockfile"], lockfile.stringify(json.object)); } - if (!options['--no-nix']) { + if (!options["--no-nix"]) { // print to stdout - console.log(generateNix(pkgs, options['--builtin-fetchgit'])) + console.log(generateNix(pkgs, options["--builtin-fetchgit"])); } })().catch(error => { - console.error(error) + console.error(error); - process.exit(1) -}) + process.exit(1); +}); diff --git a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/internal/fixup_bin.js b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/internal/fixup_bin.js index 6f0b5c93fa..a605147ab8 100755 --- a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/internal/fixup_bin.js +++ b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/internal/fixup_bin.js @@ -4,50 +4,50 @@ * node fixup_bin.js [, ... ] */ -const fs = require('fs') -const path = require('path') +const fs = require("fs"); +const path = require("path"); -const derivationBinPath = process.argv[2] -const nodeModules = process.argv[3] -const packagesToPublishBin = process.argv.slice(4) +const derivationBinPath = process.argv[2]; +const nodeModules = process.argv[3]; +const packagesToPublishBin = process.argv.slice(4); function processPackage(name) { - console.log('fixup_bin: Processing ', name) + console.log("fixup_bin: Processing ", name); - const packagePath = `${nodeModules}/${name}` - const packageJsonPath = `${packagePath}/package.json` - const packageJson = JSON.parse(fs.readFileSync(packageJsonPath)) + const packagePath = `${nodeModules}/${name}`; + const packageJsonPath = `${packagePath}/package.json`; + const packageJson = JSON.parse(fs.readFileSync(packageJsonPath)); if (!packageJson.bin) { - console.log('fixup_bin: No binaries provided') - return + console.log("fixup_bin: No binaries provided"); + return; } // There are two alternative syntaxes for `bin` // a) just a plain string, in which case the name of the package is the name of the binary. // b) an object, where key is the name of the eventual binary, and the value the path to that binary. - if (typeof packageJson.bin === 'string') { - const binName = packageJson.bin - packageJson.bin = {} - packageJson.bin[packageJson.name] = binName + if (typeof packageJson.bin === "string") { + const binName = packageJson.bin; + packageJson.bin = {}; + packageJson.bin[packageJson.name] = binName; } // eslint-disable-next-line no-restricted-syntax, guard-for-in for (const binName in packageJson.bin) { - const binPath = packageJson.bin[binName] - const normalizedBinName = binName.replace('@', '').replace('/', '-') + const binPath = packageJson.bin[binName]; + const normalizedBinName = binName.replace("@", "").replace("/", "-"); - const targetPath = path.normalize(`${packagePath}/${binPath}`) - const createdPath = `${derivationBinPath}/${normalizedBinName}` + const targetPath = path.normalize(`${packagePath}/${binPath}`); + const createdPath = `${derivationBinPath}/${normalizedBinName}`; console.log( - `fixup_bin: creating link ${createdPath} that points to ${targetPath}`, - ) + `fixup_bin: creating link ${createdPath} that points to ${targetPath}` + ); - fs.symlinkSync(targetPath, createdPath) + fs.symlinkSync(targetPath, createdPath); } } packagesToPublishBin.forEach(pkg => { - processPackage(pkg) -}) + processPackage(pkg); +}); diff --git a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/internal/fixup_yarn_lock.js b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/internal/fixup_yarn_lock.js index 3c067fc99a..319d026234 100755 --- a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/internal/fixup_yarn_lock.js +++ b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/internal/fixup_yarn_lock.js @@ -4,46 +4,46 @@ * node fixup_yarn_lock.js yarn.lock */ -const fs = require('fs') -const readline = require('readline') +const fs = require("fs"); +const readline = require("readline"); -const urlToName = require('../lib/urlToName') +const urlToName = require("../lib/urlToName"); -const yarnLockPath = process.argv[2] +const yarnLockPath = process.argv[2]; const readFile = readline.createInterface({ - input: fs.createReadStream(yarnLockPath, { encoding: 'utf8' }), + input: fs.createReadStream(yarnLockPath, { encoding: "utf8" }), // Note: we use the crlfDelay option to recognize all instances of CR LF // ('\r\n') in input.txt as a single line break. crlfDelay: Infinity, - terminal: false, // input and output should be treated like a TTY -}) + terminal: false // input and output should be treated like a TTY +}); -const result = [] +const result = []; readFile - .on('line', line => { - const arr = line.match(/^ {2}resolved "([^#]+)(#[^"]+)?"$/) + .on("line", line => { + const arr = line.match(/^ {2}resolved "([^#]+)(#[^"]+)?"$/); if (arr !== null) { - const [_, url, shaOrRev] = arr + const [_, url, shaOrRev] = arr; - const fileName = urlToName(url) + const fileName = urlToName(url); - result.push(` resolved "${fileName}${shaOrRev ?? ''}"`) + result.push(` resolved "${fileName}${shaOrRev ?? ""}"`); } else { - result.push(line) + result.push(line); } }) - .on('close', () => { - fs.writeFile(yarnLockPath, result.join('\n'), 'utf8', err => { + .on("close", () => { + fs.writeFile(yarnLockPath, result.join("\n"), "utf8", err => { if (err) { console.error( - 'fixup_yarn_lock: fatal error when trying to write to yarn.lock', - err, - ) + "fixup_yarn_lock: fatal error when trying to write to yarn.lock", + err + ); } - }) - }) + }); + }); diff --git a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/fixPkgAddMissingSha1.js b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/fixPkgAddMissingSha1.js index 40467a6899..3a5867a3d2 100644 --- a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/fixPkgAddMissingSha1.js +++ b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/fixPkgAddMissingSha1.js @@ -1,5 +1,5 @@ -const https = require('https') -const crypto = require('crypto') +const https = require("https"); +const crypto = require("crypto"); // TODO: // make test case where getSha1 function is used, i.e. the case when resolved is without sha1? @@ -8,29 +8,29 @@ const crypto = require('crypto') function getSha1(url) { return new Promise((resolve, reject) => { https.get(url, res => { - const { statusCode } = res - const hash = crypto.createHash('sha1') + const { statusCode } = res; + const hash = crypto.createHash("sha1"); if (statusCode !== 200) { - const err = new Error(`Request Failed.\nStatus Code: ${statusCode}`) + const err = new Error(`Request Failed.\nStatus Code: ${statusCode}`); // consume response data to free up memory - res.resume() + res.resume(); - reject(err) + reject(err); } - res.on('data', chunk => { - hash.update(chunk) - }) + res.on("data", chunk => { + hash.update(chunk); + }); - res.on('end', () => { - resolve(hash.digest('hex')) - }) + res.on("end", () => { + resolve(hash.digest("hex")); + }); - res.on('error', reject) - }) - }) + res.on("error", reject); + }); + }); } // Object -> Object @@ -39,28 +39,26 @@ async function fixPkgAddMissingSha1(pkg) { if (!pkg.resolved) { console.error( - `yarn2nix: can't find "resolved" field for package ${ - pkg.nameWithVersion - }, you probably required it using "file:...", this feature is not supported, ignoring`, - ) - return pkg + `yarn2nix: can't find "resolved" field for package ${pkg.nameWithVersion}, you probably required it using "file:...", this feature is not supported, ignoring` + ); + return pkg; } - const [url, sha1] = pkg.resolved.split('#', 2) + const [url, sha1] = pkg.resolved.split("#", 2); - if (sha1 || url.startsWith('https://codeload.github.com')) { - return pkg + if (sha1 || url.startsWith("https://codeload.github.com")) { + return pkg; } // if there is no sha1 in resolved url // (this could happen if yarn.lock was generated by older version of yarn) // - request it from registry by https and add it to pkg - const newSha1 = await getSha1(url) + const newSha1 = await getSha1(url); return { ...pkg, - resolved: `${url}#${newSha1}`, - } + resolved: `${url}#${newSha1}` + }; } -module.exports = fixPkgAddMissingSha1 +module.exports = fixPkgAddMissingSha1; diff --git a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/generateNix.js b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/generateNix.js index e2bae7d3d6..238fb744ab 100644 --- a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/generateNix.js +++ b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/generateNix.js @@ -1,7 +1,8 @@ -const R = require('ramda') +const R = require("ramda"); +const ssri = require("ssri"); -const urlToName = require('./urlToName') -const { execFileSync } = require('child_process') +const urlToName = require("./urlToName"); +const { execFileSync } = require("child_process"); // fetchgit transforms // @@ -33,77 +34,115 @@ const { execFileSync } = require('child_process') function prefetchgit(url, rev) { return JSON.parse( - execFileSync("nix-prefetch-git", ["--rev", rev, url, "--fetch-submodules"], { - stdio: [ "ignore", "pipe", "ignore" ], - timeout: 60000, - }) - ).sha256 + execFileSync( + "nix-prefetch-git", + ["--rev", rev, url, "--fetch-submodules"], + { + stdio: ["ignore", "pipe", "ignore"], + timeout: 60000 + } + ) + ).sha256; } function fetchgit(fileName, url, rev, branch, builtinFetchGit) { + const repo = builtinFetchGit + ? `builtins.fetchGit ({ + url = "${url}"; + ref = "${branch}"; + rev = "${rev}"; + } // (if builtins.compareVersions "2.4pre" builtins.nixVersion < 0 then { + # workaround for https://github.com/NixOS/nix/issues/5128 + allRefs = true; + } else {}))` + : `fetchgit { + url = "${url}"; + rev = "${rev}"; + sha256 = "${prefetchgit(url, rev)}"; + }`; + return ` { name = "${fileName}"; path = - let${builtinFetchGit ? ` - repo = builtins.fetchGit ({ - url = "${url}"; - ref = "${branch}"; - rev = "${rev}"; - } // (if builtins.compareVersions "2.4pre" builtins.nixVersion < 0 then { - # workaround for https://github.com/NixOS/nix/issues/5128 - allRefs = true; - } else {})); - ` : ` - repo = fetchgit { - url = "${url}"; - rev = "${rev}"; - sha256 = "${prefetchgit(url, rev)}"; - }; - `}in - runCommand "${fileName}" { buildInputs = [gnutar]; } '' - # Set u+w because tar-fs can't unpack archives with read-only dirs - # https://github.com/mafintosh/tar-fs/issues/79 - tar cf $out --mode u+w -C \${repo} . - ''; - }` + let repo = ${repo}; + in runCommand "${fileName}" { buildInputs = [gnutar]; } '' + # Set u+w because tar-fs can't unpack archives with read-only dirs + # https://github.com/mafintosh/tar-fs/issues/79 + tar cf $out --mode u+w -C \${repo} . + ''; + }`; +} + +/** + * Parse an integrity hash out of an SSRI string. + * + * Provides a default and uses the "best" supported algorithm if there are multiple. + */ +function parseIntegrity(maybeIntegrity, fallbackHash) { + if (!maybeIntegrity && fallbackHash) { + return { algo: "sha1", hash: fallbackHash }; + } + + const integrities = ssri.parse(maybeIntegrity); + for (const key in integrities) { + if (!/^sha(1|256|512)$/.test(key)) { + delete integrities[key]; + } + } + + algo = integrities.pickAlgorithm(); + hash = integrities[algo][0].digest; + return { algo, hash }; } function fetchLockedDep(builtinFetchGit) { - return function (pkg) { - const { integrity, nameWithVersion, resolved } = pkg + return function(pkg) { + const { integrity, nameWithVersion, resolved } = pkg; if (!resolved) { console.error( - `yarn2nix: can't find "resolved" field for package ${nameWithVersion}, you probably required it using "file:...", this feature is not supported, ignoring`, - ) - return '' + `yarn2nix: can't find "resolved" field for package ${nameWithVersion}, you probably required it using "file:...", this feature is not supported, ignoring` + ); + return ""; } - const [url, sha1OrRev] = resolved.split('#') + const [url, sha1OrRev] = resolved.split("#"); - const fileName = urlToName(url) + const fileName = urlToName(url); - if (resolved.startsWith('https://codeload.github.com/')) { - const s = resolved.split('/') - const githubUrl = `https://github.com/${s[3]}/${s[4]}.git` - const githubRev = s[6] + if (resolved.startsWith("https://codeload.github.com/")) { + const s = resolved.split("/"); + const githubUrl = `https://github.com/${s[3]}/${s[4]}.git`; + const githubRev = s[6]; - const [_, branch] = nameWithVersion.split('#') + const [_, branch] = nameWithVersion.split("#"); - return fetchgit(fileName, githubUrl, githubRev, branch || 'master', builtinFetchGit) + return fetchgit( + fileName, + githubUrl, + githubRev, + branch || "master", + builtinFetchGit + ); } - if (url.startsWith('git+') || url.startsWith("git:")) { - const rev = sha1OrRev + if (url.startsWith("git+") || url.startsWith("git:")) { + const rev = sha1OrRev; - const [_, branch] = nameWithVersion.split('#') + const [_, branch] = nameWithVersion.split("#"); - const urlForGit = url.replace(/^git\+/, '') + const urlForGit = url.replace(/^git\+/, ""); - return fetchgit(fileName, urlForGit, rev, branch || 'master', builtinFetchGit) + return fetchgit( + fileName, + urlForGit, + rev, + branch || "master", + builtinFetchGit + ); } - const [algo, hash] = integrity ? integrity.split('-') : ['sha1', sha1OrRev] + const { algo, hash } = parseIntegrity(integrity, sha1OrRev); return ` { name = "${fileName}"; @@ -112,26 +151,29 @@ function fetchLockedDep(builtinFetchGit) { url = "${url}"; ${algo} = "${hash}"; }; - }` - } + }`; + }; } const HEAD = ` { fetchurl, fetchgit, linkFarm, runCommand, gnutar }: rec { offline_cache = linkFarm "offline" packages; packages = [ -`.trim() +`.trim(); // Object -> String function generateNix(pkgs, builtinFetchGit) { - const nameWithVersionAndPackageNix = R.map(fetchLockedDep(builtinFetchGit), pkgs) + const nameWithVersionAndPackageNix = R.map( + fetchLockedDep(builtinFetchGit), + pkgs + ); const packagesDefinition = R.join( - '\n', - R.values(nameWithVersionAndPackageNix), - ) + "\n", + R.values(nameWithVersionAndPackageNix) + ); - return R.join('\n', [HEAD, packagesDefinition, ' ];', '}']) + return R.join("\n", [HEAD, packagesDefinition, " ];", "}"]); } -module.exports = generateNix +module.exports = generateNix; diff --git a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/mapObjIndexedReturnArray.js b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/mapObjIndexedReturnArray.js index 83c6634f7c..eb4d25e65c 100644 --- a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/mapObjIndexedReturnArray.js +++ b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/mapObjIndexedReturnArray.js @@ -1,6 +1,6 @@ -const _curry2 = require('ramda/src/internal/_curry2') -const _map = require('ramda/src/internal/_map') -const keys = require('ramda/src/keys') +const _curry2 = require("ramda/src/internal/_curry2"); +const _map = require("ramda/src/internal/_map"); +const keys = require("ramda/src/keys"); // mapObjIndexed: ((v, k, {k: v}) → v') → {k: v} → {k: v'} // mapObjIndexedReturnArray: ((v, k, {k: v}) → v') → {k: v} → [v'] @@ -15,7 +15,7 @@ const keys = require('ramda/src/keys') */ const mapObjIndexedReturnArray = _curry2((fn, obj) => - _map(key => fn(obj[key], key, obj), keys(obj)), -) + _map(key => fn(obj[key], key, obj), keys(obj)) +); -module.exports = mapObjIndexedReturnArray +module.exports = mapObjIndexedReturnArray; diff --git a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/urlToName.js b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/urlToName.js index d3c7288a50..2228e4eb48 100644 --- a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/urlToName.js +++ b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/lib/urlToName.js @@ -1,4 +1,4 @@ -const path = require('path') +const path = require("path"); // String -> String @@ -10,20 +10,19 @@ const path = require('path') // - https://codeload.github.com/Gargron/emoji-mart/tar.gz/934f314fd8322276765066e8a2a6be5bac61b1cf function urlToName(url) { - // Yarn generates `codeload.github.com` tarball URLs, where the final // path component (file name) is the git hash. See #111. // See also https://github.com/yarnpkg/yarn/blob/989a7406/src/resolvers/exotics/github-resolver.js#L24-L26 let isCodeloadGitTarballUrl = - url.startsWith('https://codeload.github.com/') && url.includes('/tar.gz/') + url.startsWith("https://codeload.github.com/") && url.includes("/tar.gz/"); - if (url.startsWith('git+') || isCodeloadGitTarballUrl) { - return path.basename(url) + if (url.startsWith("git+") || isCodeloadGitTarballUrl) { + return path.basename(url); } return url - .replace(/https:\/\/(.)*(.com)\//g, '') // prevents having long directory names - .replace(/[@/%:-]/g, '_') // replace @ and : and - and % characters with underscore + .replace(/https:\/\/(.)*(.com)\//g, "") // prevents having long directory names + .replace(/[@/%:-]/g, "_"); // replace @ and : and - and % characters with underscore } -module.exports = urlToName +module.exports = urlToName; diff --git a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/package.json b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/package.json index 5b85a68ca5..da62eadd2e 100644 --- a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/package.json +++ b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/package.json @@ -14,14 +14,15 @@ "bin": { "yarn2nix": "bin/yarn2nix.js" }, - "engines" : { - "node" : ">=8.0.0" + "engines": { + "node": ">=8.0.0" }, "dependencies": { "@yarnpkg/lockfile": "^1.1.0", "deep-equal": "^1.0.1", "docopt": "^0.6.2", - "ramda": "^0.26.1" + "ramda": "^0.26.1", + "ssri": "^10.0.0" }, "devDependencies": { "babel-eslint": "^10.0.1", diff --git a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/yarn.lock b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/yarn.lock index 6e22aa4fe4..5140ca9804 100644 --- a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/yarn.lock +++ b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/yarn.lock @@ -2228,6 +2228,13 @@ minimist@^1.2.0, minimist@^1.2.5: resolved "https://registry.yarnpkg.com/minimist/-/minimist-1.2.5.tgz#67d66014b66a6a8aaa0c083c5fd58df4e4e97602" integrity sha512-FM9nNUYrRBAELZQT3xeZQ7fmMOBg6nWNmJKTcgsJeaLstP/UODVpGsr5OhXhhXg6f+qtJ8uiZ+PUxkDWcgIXLw== +minipass@^3.1.1: + version "3.3.4" + resolved "https://registry.yarnpkg.com/minipass/-/minipass-3.3.4.tgz#ca99f95dd77c43c7a76bf51e6d200025eee0ffae" + integrity sha512-I9WPbWHCGu8W+6k1ZiGpPu0GkoKBeorkfKNuAFBNS1HNFJvke82sxvI5bzcCNpWPorkOO5QQ+zomzzwRxejXiw== + dependencies: + yallist "^4.0.0" + mixin-deep@^1.2.0: version "1.3.2" resolved "https://registry.yarnpkg.com/mixin-deep/-/mixin-deep-1.3.2.tgz#1120b43dc359a785dce65b55b82e257ccf479566" @@ -3136,6 +3143,13 @@ sprintf-js@~1.0.2: resolved "https://registry.yarnpkg.com/sprintf-js/-/sprintf-js-1.0.3.tgz#04e6926f662895354f3dd015203633b857297e2c" integrity sha1-BOaSb2YolTVPPdAVIDYzuFcpfiw= +ssri@^10.0.0: + version "10.0.0" + resolved "https://registry.yarnpkg.com/ssri/-/ssri-10.0.0.tgz#1e34554cbbc4728f5290674264e21b64aaf27ca7" + integrity sha512-64ghGOpqW0k+jh7m5jndBGdVEoPikWwGQmBNN5ks6jyUSMymzHDTlnNHOvzp+6MmHOljr2MokUzvRksnTwG0Iw== + dependencies: + minipass "^3.1.1" + staged-git-files@1.1.2: version "1.1.2" resolved "https://registry.yarnpkg.com/staged-git-files/-/staged-git-files-1.1.2.tgz#4326d33886dc9ecfa29a6193bf511ba90a46454b" @@ -3545,6 +3559,11 @@ yallist@^2.1.2: resolved "https://registry.yarnpkg.com/yallist/-/yallist-2.1.2.tgz#1c11f9218f076089a47dd512f93c6699a6a81d52" integrity sha1-HBH5IY8HYImkfdUS+TxmmaaoHVI= +yallist@^4.0.0: + version "4.0.0" + resolved "https://registry.yarnpkg.com/yallist/-/yallist-4.0.0.tgz#9bb92790d9c0effec63be73519e11a35019a3a72" + integrity sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A== + yargs-parser@^8.0.0: version "8.1.0" resolved "https://registry.yarnpkg.com/yargs-parser/-/yargs-parser-8.1.0.tgz#f1376a33b6629a5d063782944da732631e966950" diff --git a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/yarn.nix b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/yarn.nix index 98c19af79f..a6d7f79a7b 100644 --- a/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/yarn.nix +++ b/third_party/nixpkgs/pkgs/development/tools/yarn2nix-moretea/yarn2nix/yarn.nix @@ -6,7 +6,7 @@ path = fetchurl { name = "_babel_code_frame___code_frame_7.8.3.tgz"; url = "https://registry.yarnpkg.com/@babel/code-frame/-/code-frame-7.8.3.tgz"; - sha1 = "33e25903d7481181534e12ec0a25f16b6fcf419e"; + sha512 = "a9gxpmdXtZEInkCSHUJDLHZVBgb1QS0jhss4cPP93EW7s+uC5bikET2twEF3KV+7rDblJcmNvTR7VJejqd2C2g=="; }; } { @@ -14,7 +14,7 @@ path = fetchurl { name = "_babel_generator___generator_7.9.6.tgz"; url = "https://registry.yarnpkg.com/@babel/generator/-/generator-7.9.6.tgz"; - sha1 = "5408c82ac5de98cda0d77d8124e99fa1f2170a43"; + sha512 = "+htwWKJbH2bL72HRluF8zumBxzuX0ZZUFl3JLNyoUjM/Ho8wnVpPXM6aUz8cfKDqQ/h7zHqKt4xzJteUosckqQ=="; }; } { @@ -22,7 +22,7 @@ path = fetchurl { name = "_babel_helper_function_name___helper_function_name_7.9.5.tgz"; url = "https://registry.yarnpkg.com/@babel/helper-function-name/-/helper-function-name-7.9.5.tgz"; - sha1 = "2b53820d35275120e1874a82e5aabe1376920a5c"; + sha512 = "JVcQZeXM59Cd1qanDUxv9fgJpt3NeKUaqBqUEvfmQ+BCOKq2xUgaWZW2hr0dkbyJgezYuplEoh5knmrnS68efw=="; }; } { @@ -30,7 +30,7 @@ path = fetchurl { name = "_babel_helper_get_function_arity___helper_get_function_arity_7.8.3.tgz"; url = "https://registry.yarnpkg.com/@babel/helper-get-function-arity/-/helper-get-function-arity-7.8.3.tgz"; - sha1 = "b894b947bd004381ce63ea1db9f08547e920abd5"; + sha512 = "FVDR+Gd9iLjUMY1fzE2SR0IuaJToR4RkCDARVfsBBPSP53GEqSFjD8gNyxg246VUyc/ALRxFaAK8rVG7UT7xRA=="; }; } { @@ -38,7 +38,7 @@ path = fetchurl { name = "_babel_helper_split_export_declaration___helper_split_export_declaration_7.8.3.tgz"; url = "https://registry.yarnpkg.com/@babel/helper-split-export-declaration/-/helper-split-export-declaration-7.8.3.tgz"; - sha1 = "31a9f30070f91368a7182cf05f831781065fc7a9"; + sha512 = "3x3yOeyBhW851hroze7ElzdkeRXQYQbFIb7gLK1WQYsw2GWDay5gAJNw1sWJ0VFP6z5J1whqeXH/WCdCjZv6dA=="; }; } { @@ -46,7 +46,7 @@ path = fetchurl { name = "_babel_helper_validator_identifier___helper_validator_identifier_7.9.5.tgz"; url = "https://registry.yarnpkg.com/@babel/helper-validator-identifier/-/helper-validator-identifier-7.9.5.tgz"; - sha1 = "90977a8e6fbf6b431a7dc31752eee233bf052d80"; + sha512 = "/8arLKUFq882w4tWGj9JYzRpAlZgiWUJ+dtteNTDqrRBz9Iguck9Rn3ykuBDoUwh2TO4tSAJlrxDUOXWklJe4g=="; }; } { @@ -54,7 +54,7 @@ path = fetchurl { name = "_babel_highlight___highlight_7.9.0.tgz"; url = "https://registry.yarnpkg.com/@babel/highlight/-/highlight-7.9.0.tgz"; - sha1 = "4e9b45ccb82b79607271b2979ad82c7b68163079"; + sha512 = "lJZPilxX7Op3Nv/2cvFdnlepPXDxi29wxteT57Q965oc5R9v86ztx0jfxVrTcBk8C2kcPkkDa2Z4T3ZsPPVWsQ=="; }; } { @@ -62,7 +62,7 @@ path = fetchurl { name = "_babel_parser___parser_7.9.6.tgz"; url = "https://registry.yarnpkg.com/@babel/parser/-/parser-7.9.6.tgz"; - sha1 = "3b1bbb30dabe600cd72db58720998376ff653bc7"; + sha512 = "AoeIEJn8vt+d/6+PXDRPaksYhnlbMIiejioBZvvMQsOjW/JYK6k/0dKnvvP3EhK5GfMBWDPtrxRtegWdAcdq9Q=="; }; } { @@ -70,7 +70,7 @@ path = fetchurl { name = "_babel_runtime_corejs3___runtime_corejs3_7.9.6.tgz"; url = "https://registry.yarnpkg.com/@babel/runtime-corejs3/-/runtime-corejs3-7.9.6.tgz"; - sha1 = "67aded13fffbbc2cb93247388cf84d77a4be9a71"; + sha512 = "6toWAfaALQjt3KMZQc6fABqZwUDDuWzz+cAfPhqyEnzxvdWOAkjwPNxgF8xlmo7OWLsSjaKjsskpKHRLaMArOA=="; }; } { @@ -78,7 +78,7 @@ path = fetchurl { name = "_babel_runtime___runtime_7.9.6.tgz"; url = "https://registry.yarnpkg.com/@babel/runtime/-/runtime-7.9.6.tgz"; - sha1 = "a9102eb5cadedf3f31d08a9ecf294af7827ea29f"; + sha512 = "64AF1xY3OAkFHqOb9s4jpgk1Mm5vDZ4L3acHvAml+53nO1XbXLuDodsVpO4OIUsmemlUHMxNdYMNJmsvOwLrvQ=="; }; } { @@ -86,7 +86,7 @@ path = fetchurl { name = "_babel_template___template_7.8.6.tgz"; url = "https://registry.yarnpkg.com/@babel/template/-/template-7.8.6.tgz"; - sha1 = "86b22af15f828dfb086474f964dcc3e39c43ce2b"; + sha512 = "zbMsPMy/v0PWFZEhQJ66bqjhH+z0JgMoBWuikXybgG3Gkd/3t5oQ1Rw2WQhnSrsOmsKXnZOx15tkC4qON/+JPg=="; }; } { @@ -94,7 +94,7 @@ path = fetchurl { name = "_babel_traverse___traverse_7.9.6.tgz"; url = "https://registry.yarnpkg.com/@babel/traverse/-/traverse-7.9.6.tgz"; - sha1 = "5540d7577697bf619cc57b92aa0f1c231a94f442"; + sha512 = "b3rAHSjbxy6VEAvlxM8OV/0X4XrG72zoxme6q1MOoe2vd0bEc+TwayhuC1+Dfgqh1QEG+pj7atQqvUprHIccsg=="; }; } { @@ -102,7 +102,7 @@ path = fetchurl { name = "_babel_types___types_7.9.6.tgz"; url = "https://registry.yarnpkg.com/@babel/types/-/types-7.9.6.tgz"; - sha1 = "2c5502b427251e9de1bd2dff95add646d95cc9f7"; + sha512 = "qxXzvBO//jO9ZnoasKF1uJzHd2+M6Q2ZPIVfnFps8JJvXy0ZBbwbNOmE6SGIY5XOY6d1Bo5lb9d9RJ8nv3WSeA=="; }; } { @@ -110,7 +110,7 @@ path = fetchurl { name = "_samverschueren_stream_to_observable___stream_to_observable_0.3.0.tgz"; url = "https://registry.yarnpkg.com/@samverschueren/stream-to-observable/-/stream-to-observable-0.3.0.tgz"; - sha1 = "ecdf48d532c58ea477acfcab80348424f8d0662f"; + sha512 = "MI4Xx6LHs4Webyvi6EbspgyAb4D2Q2VtnCQ1blOJcoLS6mVa8lNN2rkIy1CVxfTUpoyIbCTkXES1rLXztFD1lg=="; }; } { @@ -118,7 +118,7 @@ path = fetchurl { name = "_yarnpkg_lockfile___lockfile_1.1.0.tgz"; url = "https://registry.yarnpkg.com/@yarnpkg/lockfile/-/lockfile-1.1.0.tgz"; - sha1 = "e77a97fbd345b76d83245edcd17d393b1b41fb31"; + sha512 = "GpSwvyXOcOOlV70vbnzjj4fW5xW/FdUF6nQEt1ENy7m4ZCczi1+/buVUPAqmGfqznsORNFzUMjctTIp8a9tuCQ=="; }; } { @@ -126,7 +126,7 @@ path = fetchurl { name = "abbrev___abbrev_1.1.1.tgz"; url = "https://registry.yarnpkg.com/abbrev/-/abbrev-1.1.1.tgz"; - sha1 = "f8f2c887ad10bf67f634f005b6987fed3179aac8"; + sha512 = "nne9/IiQ/hzIhY6pdDnbBtz7DjPTKrY00P/zvPSm5pOFkl6xuGrGnXn/VtTNNfNtAfZ9/1RtehkszU9qcTii0Q=="; }; } { @@ -134,7 +134,7 @@ path = fetchurl { name = "acorn_jsx___acorn_jsx_3.0.1.tgz"; url = "https://registry.yarnpkg.com/acorn-jsx/-/acorn-jsx-3.0.1.tgz"; - sha1 = "afdf9488fb1ecefc8348f6fb22f464e32a58b36b"; + sha1 = "r9+UiPsezvyDSPb7IvRk4ypYs2s="; }; } { @@ -142,7 +142,7 @@ path = fetchurl { name = "acorn_jsx___acorn_jsx_5.2.0.tgz"; url = "https://registry.yarnpkg.com/acorn-jsx/-/acorn-jsx-5.2.0.tgz"; - sha1 = "4c66069173d6fdd68ed85239fc256226182b2ebe"; + sha512 = "HiUX/+K2YpkpJ+SzBffkM/AQ2YE03S0U1kjTLVpoJdhZMOWy8qvXVN9JdLqv2QsaQ6MPYQIuNmwD8zOiYUofLQ=="; }; } { @@ -150,7 +150,7 @@ path = fetchurl { name = "acorn___acorn_3.3.0.tgz"; url = "https://registry.yarnpkg.com/acorn/-/acorn-3.3.0.tgz"; - sha1 = "45e37fb39e8da3f25baee3ff5369e2bb5f22017a"; + sha1 = "ReN/s56No/JbruP/U2niu18iAXo="; }; } { @@ -158,7 +158,7 @@ path = fetchurl { name = "acorn___acorn_5.7.4.tgz"; url = "https://registry.yarnpkg.com/acorn/-/acorn-5.7.4.tgz"; - sha1 = "3e8d8a9947d0599a1796d10225d7432f4a4acf5e"; + sha512 = "1D++VG7BhrtvQpNbBzovKNc1FLGGEE/oGe7b9xJm/RFHMBeUaUGpluV9RLjZa47YFdPcDAenEYuq9pQPcMdLJg=="; }; } { @@ -166,7 +166,7 @@ path = fetchurl { name = "acorn___acorn_6.4.1.tgz"; url = "https://registry.yarnpkg.com/acorn/-/acorn-6.4.1.tgz"; - sha1 = "531e58ba3f51b9dacb9a6646ca4debf5b14ca474"; + sha512 = "ZVA9k326Nwrj3Cj9jlh3wGFutC2ZornPNARZwsNYqQYgN0EsV2d53w5RN/co65Ohn4sUAUtb1rSUAOD6XN9idA=="; }; } { @@ -174,7 +174,7 @@ path = fetchurl { name = "ajv_keywords___ajv_keywords_2.1.1.tgz"; url = "https://registry.yarnpkg.com/ajv-keywords/-/ajv-keywords-2.1.1.tgz"; - sha1 = "617997fc5f60576894c435f940d819e135b80762"; + sha1 = "YXmX/F9gV2iUxDX5QNgZ4TW4B2I="; }; } { @@ -182,7 +182,7 @@ path = fetchurl { name = "ajv___ajv_5.5.2.tgz"; url = "https://registry.yarnpkg.com/ajv/-/ajv-5.5.2.tgz"; - sha1 = "73b5eeca3fab653e3d3f9422b341ad42205dc965"; + sha1 = "c7Xuyj+rZT49P5Qis0GtQiBdyWU="; }; } { @@ -190,7 +190,7 @@ path = fetchurl { name = "ajv___ajv_6.12.2.tgz"; url = "https://registry.yarnpkg.com/ajv/-/ajv-6.12.2.tgz"; - sha1 = "c629c5eced17baf314437918d2da88c99d5958cd"; + sha512 = "k+V+hzjm5q/Mr8ef/1Y9goCmlsK4I6Sm74teeyGvFk1XrOsbsKLjEdrvny42CZ+a8sXbk8KWpY/bDwS+FLL2UQ=="; }; } { @@ -198,7 +198,7 @@ path = fetchurl { name = "ansi_escapes___ansi_escapes_3.2.0.tgz"; url = "https://registry.yarnpkg.com/ansi-escapes/-/ansi-escapes-3.2.0.tgz"; - sha1 = "8780b98ff9dbf5638152d1f1fe5c1d7b4442976b"; + sha512 = "cBhpre4ma+U0T1oM5fXg7Dy1Jw7zzwv7lt/GoCpr+hDQJoYnKVPLL4dCvSEFMmQurOQvSrwT7SL/DAlhBI97RQ=="; }; } { @@ -206,7 +206,7 @@ path = fetchurl { name = "ansi_regex___ansi_regex_2.1.1.tgz"; url = "https://registry.yarnpkg.com/ansi-regex/-/ansi-regex-2.1.1.tgz"; - sha1 = "c3b33ab5ee360d86e0e628f0468ae7ef27d654df"; + sha1 = "w7M6te42DYbg5ijwRorn7yfWVN8="; }; } { @@ -214,7 +214,7 @@ path = fetchurl { name = "ansi_regex___ansi_regex_3.0.0.tgz"; url = "https://registry.yarnpkg.com/ansi-regex/-/ansi-regex-3.0.0.tgz"; - sha1 = "ed0317c322064f79466c02966bddb605ab37d998"; + sha1 = "7QMXwyIGT3lGbAKWa922Bas32Zg="; }; } { @@ -222,7 +222,7 @@ path = fetchurl { name = "ansi_regex___ansi_regex_4.1.0.tgz"; url = "https://registry.yarnpkg.com/ansi-regex/-/ansi-regex-4.1.0.tgz"; - sha1 = "8b9f8f08cf1acb843756a839ca8c7e3168c51997"; + sha512 = "1apePfXM1UOSqw0o9IiFAovVz9M5S1Dg+4TrDwfMewQ6p/rmMueb7tWZjQ1rx4Loy1ArBggoqGpfqqdI4rondg=="; }; } { @@ -230,7 +230,7 @@ path = fetchurl { name = "ansi_styles___ansi_styles_2.2.1.tgz"; url = "https://registry.yarnpkg.com/ansi-styles/-/ansi-styles-2.2.1.tgz"; - sha1 = "b432dd3358b634cf75e1e4664368240533c1ddbe"; + sha1 = "tDLdM1i2NM914eRmQ2gkBTPB3b4="; }; } { @@ -238,7 +238,7 @@ path = fetchurl { name = "ansi_styles___ansi_styles_3.2.1.tgz"; url = "https://registry.yarnpkg.com/ansi-styles/-/ansi-styles-3.2.1.tgz"; - sha1 = "41fbb20243e50b12be0f04b8dedbf07520ce841d"; + sha512 = "VT0ZI6kZRdTh8YyJw3SMbYm/u+NqfsAxEpWO0Pf9sq8/e94WxxOpPKx9FR1FlyCtOVDNOQ+8ntlqFxiRc+r5qA=="; }; } { @@ -246,7 +246,7 @@ path = fetchurl { name = "any_observable___any_observable_0.3.0.tgz"; url = "https://registry.yarnpkg.com/any-observable/-/any-observable-0.3.0.tgz"; - sha1 = "af933475e5806a67d0d7df090dd5e8bef65d119b"; + sha512 = "/FQM1EDkTsf63Ub2C6O7GuYFDsSXUwsaZDurV0np41ocwq0jthUAYCmhBX9f+KwlaCgIuWyr/4WlUQUBfKfZog=="; }; } { @@ -254,7 +254,7 @@ path = fetchurl { name = "argparse___argparse_1.0.10.tgz"; url = "https://registry.yarnpkg.com/argparse/-/argparse-1.0.10.tgz"; - sha1 = "bcd6791ea5ae09725e17e5ad988134cd40b3d911"; + sha512 = "o5Roy6tNG4SL/FOkCAN6RzjiakZS25RLYFrcMttJqbdd8BWrnA+fGz57iN5Pb06pvBGvl5gQ0B48dJlslXvoTg=="; }; } { @@ -262,7 +262,7 @@ path = fetchurl { name = "aria_query___aria_query_3.0.0.tgz"; url = "https://registry.yarnpkg.com/aria-query/-/aria-query-3.0.0.tgz"; - sha1 = "65b3fcc1ca1155a8c9ae64d6eee297f15d5133cc"; + sha1 = "ZbP8wcoRVajJrmTW7uKX8V1RM8w="; }; } { @@ -270,7 +270,7 @@ path = fetchurl { name = "arr_diff___arr_diff_4.0.0.tgz"; url = "https://registry.yarnpkg.com/arr-diff/-/arr-diff-4.0.0.tgz"; - sha1 = "d6461074febfec71e7e15235761a329a5dc7c520"; + sha1 = "1kYQdP6/7HHn4VI1dhoyml3HxSA="; }; } { @@ -278,7 +278,7 @@ path = fetchurl { name = "arr_flatten___arr_flatten_1.1.0.tgz"; url = "https://registry.yarnpkg.com/arr-flatten/-/arr-flatten-1.1.0.tgz"; - sha1 = "36048bbff4e7b47e136644316c99669ea5ae91f1"; + sha512 = "L3hKV5R/p5o81R7O02IGnwpDmkp6E982XhtbuwSe3O4qOtMMMtodicASA1Cny2U+aCXcNpml+m4dPsvsJ3jatg=="; }; } { @@ -286,7 +286,7 @@ path = fetchurl { name = "arr_union___arr_union_3.1.0.tgz"; url = "https://registry.yarnpkg.com/arr-union/-/arr-union-3.1.0.tgz"; - sha1 = "e39b09aea9def866a8f206e288af63919bae39c4"; + sha1 = "45sJrqne+Gao8gbiiK9jkZuuOcQ="; }; } { @@ -294,7 +294,7 @@ path = fetchurl { name = "array_includes___array_includes_3.1.1.tgz"; url = "https://registry.yarnpkg.com/array-includes/-/array-includes-3.1.1.tgz"; - sha1 = "cdd67e6852bdf9c1215460786732255ed2459348"; + sha512 = "c2VXaCHl7zPsvpkFsw4nxvFie4fh1ur9bpcgsVkIjqn0H/Xwdg+7fv3n2r/isyS8EBj5b06M9kHyZuIr4El6WQ=="; }; } { @@ -302,7 +302,7 @@ path = fetchurl { name = "array_union___array_union_1.0.2.tgz"; url = "https://registry.yarnpkg.com/array-union/-/array-union-1.0.2.tgz"; - sha1 = "9a34410e4f4e3da23dea375be5be70f24778ec39"; + sha1 = "mjRBDk9OPaI96jdb5b5w8kd47Dk="; }; } { @@ -310,7 +310,7 @@ path = fetchurl { name = "array_uniq___array_uniq_1.0.3.tgz"; url = "https://registry.yarnpkg.com/array-uniq/-/array-uniq-1.0.3.tgz"; - sha1 = "af6ac877a25cc7f74e058894753858dfdb24fdb6"; + sha1 = "r2rId6Jcx/dOBYiUdThY39sk/bY="; }; } { @@ -318,7 +318,7 @@ path = fetchurl { name = "array_unique___array_unique_0.3.2.tgz"; url = "https://registry.yarnpkg.com/array-unique/-/array-unique-0.3.2.tgz"; - sha1 = "a894b75d4bc4f6cd679ef3244a9fd8f46ae2d428"; + sha1 = "qJS3XUvE9s1nnvMkSp/Y9Gri1Cg="; }; } { @@ -326,7 +326,7 @@ path = fetchurl { name = "array.prototype.flat___array.prototype.flat_1.2.3.tgz"; url = "https://registry.yarnpkg.com/array.prototype.flat/-/array.prototype.flat-1.2.3.tgz"; - sha1 = "0de82b426b0318dbfdb940089e38b043d37f6c7b"; + sha512 = "gBlRZV0VSmfPIeWfuuy56XZMvbVfbEUnOXUvt3F/eUUUSyzlgLxhEX4YAEpxNAogRGehPSnfXyPtYyKAhkzQhQ=="; }; } { @@ -334,7 +334,7 @@ path = fetchurl { name = "arrify___arrify_1.0.1.tgz"; url = "https://registry.yarnpkg.com/arrify/-/arrify-1.0.1.tgz"; - sha1 = "898508da2226f380df904728456849c1501a4b0d"; + sha1 = "iYUI2iIm84DfkEcoRWhJwVAaSw0="; }; } { @@ -342,7 +342,7 @@ path = fetchurl { name = "assign_symbols___assign_symbols_1.0.0.tgz"; url = "https://registry.yarnpkg.com/assign-symbols/-/assign-symbols-1.0.0.tgz"; - sha1 = "59667f41fadd4f20ccbc2bb96b8d4f7f78ec0367"; + sha1 = "WWZ/QfrdTyDMvCu5a41Pf3jsA2c="; }; } { @@ -350,7 +350,7 @@ path = fetchurl { name = "ast_types_flow___ast_types_flow_0.0.7.tgz"; url = "https://registry.yarnpkg.com/ast-types-flow/-/ast-types-flow-0.0.7.tgz"; - sha1 = "f70b735c6bca1a5c9c22d982c3e39e7feba3bdad"; + sha1 = "9wtzXGvKGlycItmCw+Oef+ujva0="; }; } { @@ -358,7 +358,7 @@ path = fetchurl { name = "astral_regex___astral_regex_1.0.0.tgz"; url = "https://registry.yarnpkg.com/astral-regex/-/astral-regex-1.0.0.tgz"; - sha1 = "6c8c3fb827dd43ee3918f27b82782ab7658a6fd9"; + sha512 = "+Ryf6g3BKoRc7jfp7ad8tM4TtMiaWvbF/1/sQcZPkkS7ag3D5nMBCe2UfOTONtAkaG0tO0ij3C5Lwmf1EiyjHg=="; }; } { @@ -366,7 +366,7 @@ path = fetchurl { name = "atob___atob_2.1.2.tgz"; url = "https://registry.yarnpkg.com/atob/-/atob-2.1.2.tgz"; - sha1 = "6d9517eb9e030d2436666651e86bd9f6f13533c9"; + sha512 = "Wm6ukoaOGJi/73p/cl2GvLjTI5JM1k/O14isD73YML8StrH/7/lRFgmg8nICZgD3bZZvjwCGxtMOD3wWNAu8cg=="; }; } { @@ -374,7 +374,7 @@ path = fetchurl { name = "axobject_query___axobject_query_2.1.2.tgz"; url = "https://registry.yarnpkg.com/axobject-query/-/axobject-query-2.1.2.tgz"; - sha1 = "2bdffc0371e643e5f03ba99065d5179b9ca79799"; + sha512 = "ICt34ZmrVt8UQnvPl6TVyDTkmhXmAyAT4Jh5ugfGUX4MOrZ+U/ZY6/sdylRw3qGNr9Ub5AJsaHeDMzNLehRdOQ=="; }; } { @@ -382,7 +382,7 @@ path = fetchurl { name = "babel_code_frame___babel_code_frame_6.26.0.tgz"; url = "https://registry.yarnpkg.com/babel-code-frame/-/babel-code-frame-6.26.0.tgz"; - sha1 = "63fd43f7dc1e3bb7ce35947db8fe369a3f58c74b"; + sha1 = "Y/1D99weO7fONZR9uP42mj9Yx0s="; }; } { @@ -390,7 +390,7 @@ path = fetchurl { name = "babel_eslint___babel_eslint_10.1.0.tgz"; url = "https://registry.yarnpkg.com/babel-eslint/-/babel-eslint-10.1.0.tgz"; - sha1 = "6968e568a910b78fb3779cdd8b6ac2f479943232"; + sha512 = "ifWaTHQ0ce+448CYop8AdrQiBsGrnC+bMgfyKFdi6EsPLTAWG+QfyDeM6OH+FmWnKvEq5NnBMLvlBUPKQZoDSg=="; }; } { @@ -398,7 +398,7 @@ path = fetchurl { name = "babel_runtime___babel_runtime_6.26.0.tgz"; url = "https://registry.yarnpkg.com/babel-runtime/-/babel-runtime-6.26.0.tgz"; - sha1 = "965c7058668e82b55d7bfe04ff2337bc8b5647fe"; + sha1 = "llxwWGaOgrVde/4E/yM3vItWR/4="; }; } { @@ -406,7 +406,7 @@ path = fetchurl { name = "balanced_match___balanced_match_1.0.0.tgz"; url = "https://registry.yarnpkg.com/balanced-match/-/balanced-match-1.0.0.tgz"; - sha1 = "89b4d199ab2bee49de164ea02b89ce462d71b767"; + sha1 = "ibTRmasr7kneFk6gK4nORi1xt2c="; }; } { @@ -414,7 +414,7 @@ path = fetchurl { name = "base___base_0.11.2.tgz"; url = "https://registry.yarnpkg.com/base/-/base-0.11.2.tgz"; - sha1 = "7bde5ced145b6d551a90db87f83c558b4eb48a8f"; + sha512 = "5T6P4xPgpp0YDFvSWwEZ4NoE3aM4QBQXDzmVbraCkFj8zHM+mba8SyqB5DbZWyR7mYHo6Y7BdQo3MoA4m0TeQg=="; }; } { @@ -422,7 +422,7 @@ path = fetchurl { name = "boolify___boolify_1.0.1.tgz"; url = "https://registry.yarnpkg.com/boolify/-/boolify-1.0.1.tgz"; - sha1 = "b5c09e17cacd113d11b7bb3ed384cc012994d86b"; + sha1 = "tcCeF8rNET0Rt7s+04TMASmU2Gs="; }; } { @@ -430,7 +430,7 @@ path = fetchurl { name = "brace_expansion___brace_expansion_1.1.11.tgz"; url = "https://registry.yarnpkg.com/brace-expansion/-/brace-expansion-1.1.11.tgz"; - sha1 = "3c7fcbf529d87226f3d2f52b966ff5271eb441dd"; + sha512 = "iCuPHDFgrHX7H2vEI/5xpz07zSHB00TpugqhmYtVmMO6518mCuRMoOYFldEBl0g187ufozdaHgWKcYFb61qGiA=="; }; } { @@ -438,7 +438,7 @@ path = fetchurl { name = "braces___braces_2.3.2.tgz"; url = "https://registry.yarnpkg.com/braces/-/braces-2.3.2.tgz"; - sha1 = "5979fd3f14cd531565e5fa2df1abfff1dfaee729"; + sha512 = "aNdbnj9P8PjdXU4ybaWLK2IF3jc/EoDYbC7AazW6to3TRsfXxscC9UXOB5iDiEQrkyIbWp2SLQda4+QAa7nc3w=="; }; } { @@ -446,7 +446,7 @@ path = fetchurl { name = "buffer_from___buffer_from_1.1.1.tgz"; url = "https://registry.yarnpkg.com/buffer-from/-/buffer-from-1.1.1.tgz"; - sha1 = "32713bc028f75c02fdb710d7c7bcec1f2c6070ef"; + sha512 = "MQcXEUbCKtEo7bhqEs6560Hyd4XaovZlO/k9V3hjVUF/zwW7KBVdSK4gIt/bzwS9MbR5qob+F5jusZsb0YQK2A=="; }; } { @@ -454,7 +454,7 @@ path = fetchurl { name = "cache_base___cache_base_1.0.1.tgz"; url = "https://registry.yarnpkg.com/cache-base/-/cache-base-1.0.1.tgz"; - sha1 = "0a7f46416831c8b662ee36fe4e7c59d76f666ab2"; + sha512 = "AKcdTnFSWATd5/GCPRxr2ChwIJ85CeyrEyjRHlKxQ56d4XJMGym0uAiKn0xbLOGOl3+yRpOTi484dVCEc5AUzQ=="; }; } { @@ -462,7 +462,7 @@ path = fetchurl { name = "caller_callsite___caller_callsite_2.0.0.tgz"; url = "https://registry.yarnpkg.com/caller-callsite/-/caller-callsite-2.0.0.tgz"; - sha1 = "847e0fce0a223750a9a027c54b33731ad3154134"; + sha1 = "hH4PzgoiN1CpoCfFSzNzGtMVQTQ="; }; } { @@ -470,7 +470,7 @@ path = fetchurl { name = "caller_path___caller_path_0.1.0.tgz"; url = "https://registry.yarnpkg.com/caller-path/-/caller-path-0.1.0.tgz"; - sha1 = "94085ef63581ecd3daa92444a8fe94e82577751f"; + sha1 = "lAhe9jWB7NPaqSREqP6U6CV3dR8="; }; } { @@ -478,7 +478,7 @@ path = fetchurl { name = "caller_path___caller_path_2.0.0.tgz"; url = "https://registry.yarnpkg.com/caller-path/-/caller-path-2.0.0.tgz"; - sha1 = "468f83044e369ab2010fac5f06ceee15bb2cb1f4"; + sha1 = "Ro+DBE42mrIBD6xfBs7uFbsssfQ="; }; } { @@ -486,7 +486,7 @@ path = fetchurl { name = "callsites___callsites_0.2.0.tgz"; url = "https://registry.yarnpkg.com/callsites/-/callsites-0.2.0.tgz"; - sha1 = "afab96262910a7f33c19a5775825c69f34e350ca"; + sha1 = "r6uWJikQp/M8GaV3WCXGnzTjUMo="; }; } { @@ -494,7 +494,7 @@ path = fetchurl { name = "callsites___callsites_2.0.0.tgz"; url = "https://registry.yarnpkg.com/callsites/-/callsites-2.0.0.tgz"; - sha1 = "06eb84f00eea413da86affefacbffb36093b3c50"; + sha1 = "BuuE8A7qQT2oav/vrL/7Ngk7PFA="; }; } { @@ -502,7 +502,7 @@ path = fetchurl { name = "callsites___callsites_3.1.0.tgz"; url = "https://registry.yarnpkg.com/callsites/-/callsites-3.1.0.tgz"; - sha1 = "b3630abd8943432f54b3f0519238e33cd7df2f73"; + sha512 = "P8BjAsXvZS+VIDUI11hHCQEv74YT67YUi5JJFNWIqL235sBmjX4+qx9Muvls5ivyNENctx46xQLQ3aTuE7ssaQ=="; }; } { @@ -510,7 +510,7 @@ path = fetchurl { name = "camelcase_keys___camelcase_keys_4.2.0.tgz"; url = "https://registry.yarnpkg.com/camelcase-keys/-/camelcase-keys-4.2.0.tgz"; - sha1 = "a2aa5fb1af688758259c32c141426d78923b9b77"; + sha1 = "oqpfsa9oh1glnDLBQUJteJI7m3c="; }; } { @@ -518,7 +518,7 @@ path = fetchurl { name = "camelcase___camelcase_4.1.0.tgz"; url = "https://registry.yarnpkg.com/camelcase/-/camelcase-4.1.0.tgz"; - sha1 = "d545635be1e33c542649c69173e5de6acfae34dd"; + sha1 = "1UVjW+HjPFQmScaRc+Xeas+uNN0="; }; } { @@ -526,7 +526,7 @@ path = fetchurl { name = "chalk___chalk_2.3.0.tgz"; url = "https://registry.yarnpkg.com/chalk/-/chalk-2.3.0.tgz"; - sha1 = "b5ea48efc9c1793dccc9b4767c93914d3f2d52ba"; + sha512 = "Az5zJR2CBujap2rqXGaJKaPHyJ0IrUimvYNX+ncCy8PJP4ltOGTrHUIo097ZaL2zMeKYpiCdqDvS6zdrTFok3Q=="; }; } { @@ -534,7 +534,7 @@ path = fetchurl { name = "chalk___chalk_1.1.3.tgz"; url = "https://registry.yarnpkg.com/chalk/-/chalk-1.1.3.tgz"; - sha1 = "a8115c55e4a702fe4d150abd3872822a7e09fc98"; + sha1 = "qBFcVeSnAv5NFQq9OHKCKn4J/Jg="; }; } { @@ -542,7 +542,7 @@ path = fetchurl { name = "chalk___chalk_2.4.2.tgz"; url = "https://registry.yarnpkg.com/chalk/-/chalk-2.4.2.tgz"; - sha1 = "cd42541677a54333cf541a49108c1432b44c9424"; + sha512 = "Mti+f9lpJNcwF4tWV8/OrTTtF1gZi+f8FqlyAdouralcFWFQWF2+NgCHShjkCb+IFBLq9buZwE1xckQU4peSuQ=="; }; } { @@ -550,7 +550,7 @@ path = fetchurl { name = "chardet___chardet_0.4.2.tgz"; url = "https://registry.yarnpkg.com/chardet/-/chardet-0.4.2.tgz"; - sha1 = "b5473b33dc97c424e5d98dc87d55d4d8a29c8bf2"; + sha1 = "tUc7M9yXxCTl2Y3IfVXU2KKci/I="; }; } { @@ -558,7 +558,7 @@ path = fetchurl { name = "chardet___chardet_0.7.0.tgz"; url = "https://registry.yarnpkg.com/chardet/-/chardet-0.7.0.tgz"; - sha1 = "90094849f0937f2eedc2425d0d28a9e5f0cbad9e"; + sha512 = "mT8iDcrh03qDGRRmoA2hmBJnxpllMR+0/0qlzjqZES6NdiWDcZkCNAk4rPFZ9Q85r27unkiNNg8ZOiwZXBHwcA=="; }; } { @@ -566,7 +566,7 @@ path = fetchurl { name = "ci_info___ci_info_2.0.0.tgz"; url = "https://registry.yarnpkg.com/ci-info/-/ci-info-2.0.0.tgz"; - sha1 = "67a9e964be31a51e15e5010d58e6f12834002f46"; + sha512 = "5tK7EtrZ0N+OLFMthtqOj4fI2Jeb88C4CAZPu25LDVUgXJ0A3Js4PMGqrn0JU1W0Mh1/Z8wZzYPxqUrXeBboCQ=="; }; } { @@ -574,7 +574,7 @@ path = fetchurl { name = "circular_json___circular_json_0.3.3.tgz"; url = "https://registry.yarnpkg.com/circular-json/-/circular-json-0.3.3.tgz"; - sha1 = "815c99ea84f6809529d2f45791bdf82711352d66"; + sha512 = "UZK3NBx2Mca+b5LsG7bY183pHWt5Y1xts4P3Pz7ENTwGVnJOUWbRb3ocjvX7hx9tq/yTAdclXm9sZ38gNuem4A=="; }; } { @@ -582,7 +582,7 @@ path = fetchurl { name = "class_utils___class_utils_0.3.6.tgz"; url = "https://registry.yarnpkg.com/class-utils/-/class-utils-0.3.6.tgz"; - sha1 = "f93369ae8b9a7ce02fd41faad0ca83033190c463"; + sha512 = "qOhPa/Fj7s6TY8H8esGu5QNpMMQxz79h+urzrNYN6mn+9BnxlDGf5QZ+XeCDsxSjPqsSR56XOZOJmpeurnLMeg=="; }; } { @@ -590,7 +590,7 @@ path = fetchurl { name = "cli_cursor___cli_cursor_2.1.0.tgz"; url = "https://registry.yarnpkg.com/cli-cursor/-/cli-cursor-2.1.0.tgz"; - sha1 = "b35dac376479facc3e94747d41d0d0f5238ffcb5"; + sha1 = "s12sN2R5+sw+lHR9QdDQ9SOP/LU="; }; } { @@ -598,7 +598,7 @@ path = fetchurl { name = "cli_truncate___cli_truncate_0.2.1.tgz"; url = "https://registry.yarnpkg.com/cli-truncate/-/cli-truncate-0.2.1.tgz"; - sha1 = "9f15cfbb0705005369216c626ac7d05ab90dd574"; + sha1 = "nxXPuwcFAFNpIWxiasfQWrkN1XQ="; }; } { @@ -606,7 +606,7 @@ path = fetchurl { name = "cli_width___cli_width_2.2.1.tgz"; url = "https://registry.yarnpkg.com/cli-width/-/cli-width-2.2.1.tgz"; - sha1 = "b0433d0b4e9c847ef18868a4ef16fd5fc8271c48"; + sha512 = "GRMWDxpOB6Dgk2E5Uo+3eEBvtOOlimMmpbFiKuLFnQzYDavtLFY3K5ona41jgN/WdRZtG7utuVSVTL4HbZHGkw=="; }; } { @@ -614,7 +614,7 @@ path = fetchurl { name = "cliui___cliui_3.2.0.tgz"; url = "https://registry.yarnpkg.com/cliui/-/cliui-3.2.0.tgz"; - sha1 = "120601537a916d29940f934da3b48d585a39213d"; + sha1 = "EgYBU3qRbSmUD5NNo7SNWFo5IT0="; }; } { @@ -622,7 +622,7 @@ path = fetchurl { name = "co___co_4.6.0.tgz"; url = "https://registry.yarnpkg.com/co/-/co-4.6.0.tgz"; - sha1 = "6ea6bdf3d853ae54ccb8e47bfa0bf3f9031fb184"; + sha1 = "bqa989hTrlTMuOR7+gvz+QMfsYQ="; }; } { @@ -630,7 +630,7 @@ path = fetchurl { name = "code_point_at___code_point_at_1.1.0.tgz"; url = "https://registry.yarnpkg.com/code-point-at/-/code-point-at-1.1.0.tgz"; - sha1 = "0d070b4d043a5bea33a2f1a40e2edb3d9a4ccf77"; + sha1 = "DQcLTQQ6W+ozovGkDi7bPZpMz3c="; }; } { @@ -638,7 +638,7 @@ path = fetchurl { name = "collection_visit___collection_visit_1.0.0.tgz"; url = "https://registry.yarnpkg.com/collection-visit/-/collection-visit-1.0.0.tgz"; - sha1 = "4bc0373c164bc3291b4d368c829cf1a80a59dca0"; + sha1 = "S8A3PBZLwykbTTaMgpzxqApZ3KA="; }; } { @@ -646,7 +646,7 @@ path = fetchurl { name = "color_convert___color_convert_1.9.3.tgz"; url = "https://registry.yarnpkg.com/color-convert/-/color-convert-1.9.3.tgz"; - sha1 = "bb71850690e1f136567de629d2d5471deda4c1e8"; + sha512 = "QfAUtd+vFdAtFQcC8CCyYt1fYWxSqAiK2cSD6zDB8N3cpsEBAvRxp9zOGg6G/SHHJYAT88/az/IuDGALsNVbGg=="; }; } { @@ -654,7 +654,7 @@ path = fetchurl { name = "color_name___color_name_1.1.3.tgz"; url = "https://registry.yarnpkg.com/color-name/-/color-name-1.1.3.tgz"; - sha1 = "a7d0558bd89c42f795dd42328f740831ca53bc25"; + sha1 = "p9BVi9icQveV3UIyj3QIMcpTvCU="; }; } { @@ -662,7 +662,7 @@ path = fetchurl { name = "commander___commander_2.20.3.tgz"; url = "https://registry.yarnpkg.com/commander/-/commander-2.20.3.tgz"; - sha1 = "fd485e84c03eb4881c20722ba48035e8531aeb33"; + sha512 = "GpVkmM8vF2vQUkj2LvZmD35JxeJOLCwJ9cUkugyk2nuhbv3+mJvpLYYt+0+USMxE+oj+ey/lJEnhZw75x/OMcQ=="; }; } { @@ -670,7 +670,7 @@ path = fetchurl { name = "common_tags___common_tags_1.8.0.tgz"; url = "https://registry.yarnpkg.com/common-tags/-/common-tags-1.8.0.tgz"; - sha1 = "8e3153e542d4a39e9b10554434afaaf98956a937"; + sha512 = "6P6g0uetGpW/sdyUy/iQQCbFF0kWVMSIVSyYz7Zgjcgh8mgw8PQzDNZeyZ5DQ2gM7LBoZPHmnjz8rUthkBG5tw=="; }; } { @@ -678,7 +678,7 @@ path = fetchurl { name = "component_emitter___component_emitter_1.3.0.tgz"; url = "https://registry.yarnpkg.com/component-emitter/-/component-emitter-1.3.0.tgz"; - sha1 = "16e4070fba8ae29b679f2215853ee181ab2eabc0"; + sha512 = "Rd3se6QB+sO1TwqZjscQrurpEPIfO0/yYnSin6Q/rD3mOutHvUrCAhJub3r90uNb+SESBuE0QYoB90YdfatsRg=="; }; } { @@ -686,7 +686,7 @@ path = fetchurl { name = "concat_map___concat_map_0.0.1.tgz"; url = "https://registry.yarnpkg.com/concat-map/-/concat-map-0.0.1.tgz"; - sha1 = "d8a96bd77fd68df7793a73036a3ba0d5405d477b"; + sha1 = "2Klr13/Wjfd5OnMDajug1UBdR3s="; }; } { @@ -694,7 +694,7 @@ path = fetchurl { name = "concat_stream___concat_stream_1.6.2.tgz"; url = "https://registry.yarnpkg.com/concat-stream/-/concat-stream-1.6.2.tgz"; - sha1 = "904bdf194cd3122fc675c77fc4ac3d4ff0fd1a34"; + sha512 = "27HBghJxjiZtIk3Ycvn/4kbJk/1uZuJFfuPEns6LaEvpvG1f0hTea8lilrouyo9mVc2GWdcEZ8OLoGmSADlrCw=="; }; } { @@ -702,7 +702,7 @@ path = fetchurl { name = "confusing_browser_globals___confusing_browser_globals_1.0.9.tgz"; url = "https://registry.yarnpkg.com/confusing-browser-globals/-/confusing-browser-globals-1.0.9.tgz"; - sha1 = "72bc13b483c0276801681871d4898516f8f54fdd"; + sha512 = "KbS1Y0jMtyPgIxjO7ZzMAuUpAKMt1SzCL9fsrKsX6b0zJPTaT0SiSPmewwVZg9UAO83HVIlEhZF84LIjZ0lmAw=="; }; } { @@ -710,7 +710,7 @@ path = fetchurl { name = "contains_path___contains_path_0.1.0.tgz"; url = "https://registry.yarnpkg.com/contains-path/-/contains-path-0.1.0.tgz"; - sha1 = "fe8cf184ff6670b6baef01a9d4861a5cbec4120a"; + sha1 = "/ozxhP9mcLa67wGp1IYaXL7EEgo="; }; } { @@ -718,7 +718,7 @@ path = fetchurl { name = "copy_descriptor___copy_descriptor_0.1.1.tgz"; url = "https://registry.yarnpkg.com/copy-descriptor/-/copy-descriptor-0.1.1.tgz"; - sha1 = "676f6eb3c39997c2ee1ac3a924fd6124748f578d"; + sha1 = "Z29us8OZl8LuGsOpJP1hJHSPV40="; }; } { @@ -726,7 +726,7 @@ path = fetchurl { name = "core_js_pure___core_js_pure_3.6.5.tgz"; url = "https://registry.yarnpkg.com/core-js-pure/-/core-js-pure-3.6.5.tgz"; - sha1 = "c79e75f5e38dbc85a662d91eea52b8256d53b813"; + sha512 = "lacdXOimsiD0QyNf9BC/mxivNJ/ybBGJXQFKzRekp1WTHoVUWsUHEn+2T8GJAzzIhyOuXA+gOxCVN3l+5PLPUA=="; }; } { @@ -734,7 +734,7 @@ path = fetchurl { name = "core_js___core_js_2.6.11.tgz"; url = "https://registry.yarnpkg.com/core-js/-/core-js-2.6.11.tgz"; - sha1 = "38831469f9922bded8ee21c9dc46985e0399308c"; + sha512 = "5wjnpaT/3dV+XB4borEsnAYQchn00XSgTAWKDkEqv+K8KevjbzmofK6hfJ9TZIlpj2N0xQpazy7PiRQiWHqzWg=="; }; } { @@ -742,7 +742,7 @@ path = fetchurl { name = "core_util_is___core_util_is_1.0.2.tgz"; url = "https://registry.yarnpkg.com/core-util-is/-/core-util-is-1.0.2.tgz"; - sha1 = "b5fd54220aa2bc5ab57aab7140c940754503c1a7"; + sha1 = "tf1UIgqivFq1eqtxQMlAdUUDwac="; }; } { @@ -750,7 +750,7 @@ path = fetchurl { name = "cosmiconfig___cosmiconfig_5.2.1.tgz"; url = "https://registry.yarnpkg.com/cosmiconfig/-/cosmiconfig-5.2.1.tgz"; - sha1 = "040f726809c591e77a17c0a3626ca45b4f168b1a"; + sha512 = "H65gsXo1SKjf8zmrJ67eJk8aIRKV5ff2D4uKZIBZShbhGSpEmsQOPW/SKMKYhSTrqR7ufy6RP69rPogdaPh/kA=="; }; } { @@ -758,7 +758,7 @@ path = fetchurl { name = "cross_spawn___cross_spawn_5.1.0.tgz"; url = "https://registry.yarnpkg.com/cross-spawn/-/cross-spawn-5.1.0.tgz"; - sha1 = "e8bd0efee58fcff6f8f94510a0a554bbfa235449"; + sha1 = "6L0O/uWPz/b4+UUQoKVUu/ojVEk="; }; } { @@ -766,7 +766,7 @@ path = fetchurl { name = "cross_spawn___cross_spawn_6.0.5.tgz"; url = "https://registry.yarnpkg.com/cross-spawn/-/cross-spawn-6.0.5.tgz"; - sha1 = "4a5ec7c64dfae22c3a14124dbacdee846d80cbc4"; + sha512 = "eTVLrBSt7fjbDygz805pMnstIs2VTBNkRm0qxZd+M7A5XDdxVRWO5MxGBXZhjY4cqLYLdtrGqRf8mBPmzwSpWQ=="; }; } { @@ -774,7 +774,7 @@ path = fetchurl { name = "damerau_levenshtein___damerau_levenshtein_1.0.6.tgz"; url = "https://registry.yarnpkg.com/damerau-levenshtein/-/damerau-levenshtein-1.0.6.tgz"; - sha1 = "143c1641cb3d85c60c32329e26899adea8701791"; + sha512 = "JVrozIeElnj3QzfUIt8tB8YMluBJom4Vw9qTPpjGYQ9fYlB3D/rb6OordUxf3xeFB35LKWs0xqcO5U6ySvBtug=="; }; } { @@ -782,7 +782,7 @@ path = fetchurl { name = "date_fns___date_fns_1.30.1.tgz"; url = "https://registry.yarnpkg.com/date-fns/-/date-fns-1.30.1.tgz"; - sha1 = "2e71bf0b119153dbb4cc4e88d9ea5acfb50dc05c"; + sha512 = "hBSVCvSmWC+QypYObzwGOd9wqdDpOt+0wl0KbU+R+uuZBS1jN8VsD1ss3irQDknRj5NvxiTF6oj/nDRnN/UQNw=="; }; } { @@ -790,7 +790,7 @@ path = fetchurl { name = "debug___debug_2.6.9.tgz"; url = "https://registry.yarnpkg.com/debug/-/debug-2.6.9.tgz"; - sha1 = "5d128515df134ff327e90a4c93f4e077a536341f"; + sha512 = "bC7ElrdJaJnPbAP+1EotYvqZsb3ecl5wi6Bfi6BJTUcNowp6cvspg0jXznRTKDjm/E7AdgFBVeAPVMNcKGsHMA=="; }; } { @@ -798,7 +798,7 @@ path = fetchurl { name = "debug___debug_3.2.6.tgz"; url = "https://registry.yarnpkg.com/debug/-/debug-3.2.6.tgz"; - sha1 = "e83d17de16d8a7efb7717edbe5fb10135eee629b"; + sha512 = "mel+jf7nrtEl5Pn1Qx46zARXKDpBbvzezse7p7LqINmdoIk8PYP5SySaxEmYv6TZ0JyEKA1hsCId6DIhgITtWQ=="; }; } { @@ -806,7 +806,7 @@ path = fetchurl { name = "debug___debug_4.1.1.tgz"; url = "https://registry.yarnpkg.com/debug/-/debug-4.1.1.tgz"; - sha1 = "3b72260255109c6b589cee050f1d516139664791"; + sha512 = "pYAIzeRo8J6KPEaJ0VWOh5Pzkbw/RetuzehGM7QRRX5he4fPHx2rdKMB256ehJCkX+XRQm16eZLqLNS8RSZXZw=="; }; } { @@ -814,7 +814,7 @@ path = fetchurl { name = "decamelize___decamelize_1.2.0.tgz"; url = "https://registry.yarnpkg.com/decamelize/-/decamelize-1.2.0.tgz"; - sha1 = "f6534d15148269b20352e7bee26f501f9a191290"; + sha1 = "9lNNFRSCabIDUue+4m9QH5oZEpA="; }; } { @@ -822,7 +822,7 @@ path = fetchurl { name = "decode_uri_component___decode_uri_component_0.2.0.tgz"; url = "https://registry.yarnpkg.com/decode-uri-component/-/decode-uri-component-0.2.0.tgz"; - sha1 = "eb3913333458775cb84cd1a1fae062106bb87545"; + sha1 = "6zkTMzRYd1y4TNGh+uBiEGu4dUU="; }; } { @@ -830,7 +830,7 @@ path = fetchurl { name = "dedent___dedent_0.7.0.tgz"; url = "https://registry.yarnpkg.com/dedent/-/dedent-0.7.0.tgz"; - sha1 = "2495ddbaf6eb874abb0e1be9df22d2e5a544326c"; + sha1 = "JJXduvbrh0q7Dhvp3yLS5aVEMmw="; }; } { @@ -838,7 +838,7 @@ path = fetchurl { name = "deep_equal___deep_equal_1.1.1.tgz"; url = "https://registry.yarnpkg.com/deep-equal/-/deep-equal-1.1.1.tgz"; - sha1 = "b5c98c942ceffaf7cb051e24e1434a25a2e6076a"; + sha512 = "yd9c5AdiqVcR+JjcwUQb9DkhJc8ngNr0MahEBGvDiJw8puWab2yZlh+nkasOnZP+EGTAP6rRp2JzJhJZzvNF8g=="; }; } { @@ -846,7 +846,7 @@ path = fetchurl { name = "deep_is___deep_is_0.1.3.tgz"; url = "https://registry.yarnpkg.com/deep-is/-/deep-is-0.1.3.tgz"; - sha1 = "b369d6fb5dbc13eecf524f91b070feedc357cf34"; + sha1 = "s2nW+128E+7PUk+RsHD+7cNXzzQ="; }; } { @@ -854,7 +854,7 @@ path = fetchurl { name = "define_properties___define_properties_1.1.3.tgz"; url = "https://registry.yarnpkg.com/define-properties/-/define-properties-1.1.3.tgz"; - sha1 = "cf88da6cbee26fe6db7094f61d870cbd84cee9f1"; + sha512 = "3MqfYKj2lLzdMSf8ZIZE/V+Zuy+BgD6f164e8K2w7dgnpKArBDerGYpM46IYYcjnkdPNMjPk9A6VFB8+3SKlXQ=="; }; } { @@ -862,7 +862,7 @@ path = fetchurl { name = "define_property___define_property_0.2.5.tgz"; url = "https://registry.yarnpkg.com/define-property/-/define-property-0.2.5.tgz"; - sha1 = "c35b1ef918ec3c990f9a5bc57be04aacec5c8116"; + sha1 = "w1se+RjsPJkPmlvFe+BKrOxcgRY="; }; } { @@ -870,7 +870,7 @@ path = fetchurl { name = "define_property___define_property_1.0.0.tgz"; url = "https://registry.yarnpkg.com/define-property/-/define-property-1.0.0.tgz"; - sha1 = "769ebaaf3f4a63aad3af9e8d304c9bbe79bfb0e6"; + sha1 = "dp66rz9KY6rTr56NMEybvnm/sOY="; }; } { @@ -878,7 +878,7 @@ path = fetchurl { name = "define_property___define_property_2.0.2.tgz"; url = "https://registry.yarnpkg.com/define-property/-/define-property-2.0.2.tgz"; - sha1 = "d459689e8d654ba77e02a817f8710d702cb16e9d"; + sha512 = "jwK2UV4cnPpbcG7+VRARKTZPUWowwXA8bzH5NP6ud0oeAxyYPuGZUAC7hMugpCdz4BeSZl2Dl9k66CHJ/46ZYQ=="; }; } { @@ -886,7 +886,7 @@ path = fetchurl { name = "del___del_3.0.0.tgz"; url = "https://registry.yarnpkg.com/del/-/del-3.0.0.tgz"; - sha1 = "53ecf699ffcbcb39637691ab13baf160819766e5"; + sha1 = "U+z2mf/LyzljdpGrE7rxYIGXZuU="; }; } { @@ -894,7 +894,7 @@ path = fetchurl { name = "dlv___dlv_1.1.3.tgz"; url = "https://registry.yarnpkg.com/dlv/-/dlv-1.1.3.tgz"; - sha1 = "5c198a8a11453596e751494d49874bc7732f2e79"; + sha512 = "+HlytyjlPKnIG8XuRG8WvmBP8xs8P71y+SKKS6ZXWoEgLuePxtDoUEiH7WkdePWrQ5JBpE6aoVqfZfJUQkjXwA=="; }; } { @@ -902,7 +902,7 @@ path = fetchurl { name = "docopt___docopt_0.6.2.tgz"; url = "https://registry.yarnpkg.com/docopt/-/docopt-0.6.2.tgz"; - sha1 = "b28e9e2220da5ec49f7ea5bb24a47787405eeb11"; + sha1 = "so6eIiDaXsSffqW7JKR3h0Be6xE="; }; } { @@ -910,7 +910,7 @@ path = fetchurl { name = "doctrine___doctrine_1.5.0.tgz"; url = "https://registry.yarnpkg.com/doctrine/-/doctrine-1.5.0.tgz"; - sha1 = "379dce730f6166f76cefa4e6707a159b02c5a6fa"; + sha1 = "N53Ocw9hZvds76TmcHoVmwLFpvo="; }; } { @@ -918,7 +918,7 @@ path = fetchurl { name = "doctrine___doctrine_2.1.0.tgz"; url = "https://registry.yarnpkg.com/doctrine/-/doctrine-2.1.0.tgz"; - sha1 = "5cd01fc101621b42c4cd7f5d1a66243716d3f39d"; + sha512 = "35mSku4ZXK0vfCuHEDAwt55dg2jNajHZ1odvF+8SSr82EsZY4QmXfuWso8oEd8zRhVObSN18aM0CjSdoBX7zIw=="; }; } { @@ -926,7 +926,7 @@ path = fetchurl { name = "doctrine___doctrine_3.0.0.tgz"; url = "https://registry.yarnpkg.com/doctrine/-/doctrine-3.0.0.tgz"; - sha1 = "addebead72a6574db783639dc87a121773973961"; + sha512 = "yS+Q5i3hBf7GBkd4KG8a7eBNNWNGLTaEwwYWUijIYM7zrlYDM0BFXHjjPWlWZ1Rg7UaddZeIDmi9jF3HmqiQ2w=="; }; } { @@ -934,7 +934,7 @@ path = fetchurl { name = "elegant_spinner___elegant_spinner_1.0.1.tgz"; url = "https://registry.yarnpkg.com/elegant-spinner/-/elegant-spinner-1.0.1.tgz"; - sha1 = "db043521c95d7e303fd8f345bedc3349cfb0729e"; + sha1 = "2wQ1IcldfjA/2PNFvtwzSc+wcp4="; }; } { @@ -942,7 +942,7 @@ path = fetchurl { name = "emoji_regex___emoji_regex_7.0.3.tgz"; url = "https://registry.yarnpkg.com/emoji-regex/-/emoji-regex-7.0.3.tgz"; - sha1 = "933a04052860c85e83c122479c4748a8e4c72156"; + sha512 = "CwBLREIQ7LvYFB0WyRvwhq5N5qPhc6PMjD6bYggFlI5YyDgl+0vxq5VHbMOFqLg7hfWzmu8T5Z1QofhmTIhItA=="; }; } { @@ -950,7 +950,7 @@ path = fetchurl { name = "end_of_stream___end_of_stream_1.4.4.tgz"; url = "https://registry.yarnpkg.com/end-of-stream/-/end-of-stream-1.4.4.tgz"; - sha1 = "5ae64a5f45057baf3626ec14da0ca5e4b2431eb0"; + sha512 = "+uw1inIHVPQoaVuHzRyXd21icM+cnt4CzD5rW+NC1wjOUSTOs+Te7FOv7AhN7vS9x/oIyhLP5PR1H+phQAHu5Q=="; }; } { @@ -958,7 +958,7 @@ path = fetchurl { name = "error_ex___error_ex_1.3.2.tgz"; url = "https://registry.yarnpkg.com/error-ex/-/error-ex-1.3.2.tgz"; - sha1 = "b4ac40648107fdcdcfae242f428bea8a14d4f1bf"; + sha512 = "7dFHNmqeFSEt2ZBsCriorKnn3Z2pj+fd9kmI6QoWw4//DL+icEBfc0U7qJCisqrTsKTjw4fNFy2pW9OqStD84g=="; }; } { @@ -966,7 +966,7 @@ path = fetchurl { name = "es_abstract___es_abstract_1.17.5.tgz"; url = "https://registry.yarnpkg.com/es-abstract/-/es-abstract-1.17.5.tgz"; - sha1 = "d8c9d1d66c8981fb9200e2251d799eee92774ae9"; + sha512 = "BR9auzDbySxOcfog0tLECW8l28eRGpDpU3Dm3Hp4q/N+VtLTmyj4EUN088XZWQDW/hzj6sYRDXeOFsaAODKvpg=="; }; } { @@ -974,7 +974,7 @@ path = fetchurl { name = "es_to_primitive___es_to_primitive_1.2.1.tgz"; url = "https://registry.yarnpkg.com/es-to-primitive/-/es-to-primitive-1.2.1.tgz"; - sha1 = "e55cd4c9cdc188bcefb03b366c736323fc5c898a"; + sha512 = "QCOllgZJtaUo9miYBcLChTUaHNjJF3PYs1VidD7AwiEj1kYxKeQTctLAezAOH5ZKRH0g2IgPn6KwB4IT8iRpvA=="; }; } { @@ -982,7 +982,7 @@ path = fetchurl { name = "escape_string_regexp___escape_string_regexp_1.0.5.tgz"; url = "https://registry.yarnpkg.com/escape-string-regexp/-/escape-string-regexp-1.0.5.tgz"; - sha1 = "1b61c0562190a8dff6ae3bb2cf0200ca130b86d4"; + sha1 = "G2HAViGQqN/2rjuyzwIAyhMLhtQ="; }; } { @@ -990,7 +990,7 @@ path = fetchurl { name = "eslint_config_airbnb_base___eslint_config_airbnb_base_13.2.0.tgz"; url = "https://registry.yarnpkg.com/eslint-config-airbnb-base/-/eslint-config-airbnb-base-13.2.0.tgz"; - sha1 = "f6ea81459ff4dec2dda200c35f1d8f7419d57943"; + sha512 = "1mg/7eoB4AUeB0X1c/ho4vb2gYkNH8Trr/EgCT/aGmKhhG+F6vF5s8+iRBlWAzFIAphxIdp3YfEKgEl0f9Xg+w=="; }; } { @@ -998,7 +998,7 @@ path = fetchurl { name = "eslint_config_airbnb___eslint_config_airbnb_17.1.1.tgz"; url = "https://registry.yarnpkg.com/eslint-config-airbnb/-/eslint-config-airbnb-17.1.1.tgz"; - sha1 = "2272e0b86bb1e2b138cdf88d07a3b6f4cda3d626"; + sha512 = "xCu//8a/aWqagKljt+1/qAM62BYZeNq04HmdevG5yUGWpja0I/xhqd6GdLRch5oetEGFiJAnvtGuTEAese53Qg=="; }; } { @@ -1006,7 +1006,7 @@ path = fetchurl { name = "eslint_config_prettier___eslint_config_prettier_3.6.0.tgz"; url = "https://registry.yarnpkg.com/eslint-config-prettier/-/eslint-config-prettier-3.6.0.tgz"; - sha1 = "8ca3ffac4bd6eeef623a0651f9d754900e3ec217"; + sha512 = "ixJ4U3uTLXwJts4rmSVW/lMXjlGwCijhBJHk8iVqKKSifeI0qgFEfWl8L63isfc8Od7EiBALF6BX3jKLluf/jQ=="; }; } { @@ -1014,7 +1014,7 @@ path = fetchurl { name = "eslint_config_standard___eslint_config_standard_12.0.0.tgz"; url = "https://registry.yarnpkg.com/eslint-config-standard/-/eslint-config-standard-12.0.0.tgz"; - sha1 = "638b4c65db0bd5a41319f96bba1f15ddad2107d9"; + sha512 = "COUz8FnXhqFitYj4DTqHzidjIL/t4mumGZto5c7DrBpvWoie+Sn3P4sLEzUGeYhRElWuFEf8K1S1EfvD1vixCQ=="; }; } { @@ -1022,7 +1022,7 @@ path = fetchurl { name = "eslint_import_resolver_node___eslint_import_resolver_node_0.3.3.tgz"; url = "https://registry.yarnpkg.com/eslint-import-resolver-node/-/eslint-import-resolver-node-0.3.3.tgz"; - sha1 = "dbaa52b6b2816b50bc6711af75422de808e98404"; + sha512 = "b8crLDo0M5RSe5YG8Pu2DYBj71tSB6OvXkfzwbJU2w7y8P4/yo0MyF8jU26IEuEuHF2K5/gcAJE3LhQGqBBbVg=="; }; } { @@ -1030,7 +1030,7 @@ path = fetchurl { name = "eslint_module_utils___eslint_module_utils_2.6.0.tgz"; url = "https://registry.yarnpkg.com/eslint-module-utils/-/eslint-module-utils-2.6.0.tgz"; - sha1 = "579ebd094f56af7797d19c9866c9c9486629bfa6"; + sha512 = "6j9xxegbqe8/kZY8cYpcp0xhbK0EgJlg3g9mib3/miLaExuuwc3n5UEfSnU6hWMbT0FAYVvDbL9RrRgpUeQIvA=="; }; } { @@ -1038,7 +1038,7 @@ path = fetchurl { name = "eslint_plugin_es___eslint_plugin_es_1.4.1.tgz"; url = "https://registry.yarnpkg.com/eslint-plugin-es/-/eslint-plugin-es-1.4.1.tgz"; - sha1 = "12acae0f4953e76ba444bfd1b2271081ac620998"; + sha512 = "5fa/gR2yR3NxQf+UXkeLeP8FBBl6tSgdrAz1+cF84v1FMM4twGwQoqTnn+QxFLcPOrF4pdKEJKDB/q9GoyJrCA=="; }; } { @@ -1046,7 +1046,7 @@ path = fetchurl { name = "eslint_plugin_import___eslint_plugin_import_2.20.2.tgz"; url = "https://registry.yarnpkg.com/eslint-plugin-import/-/eslint-plugin-import-2.20.2.tgz"; - sha1 = "91fc3807ce08be4837141272c8b99073906e588d"; + sha512 = "FObidqpXrR8OnCh4iNsxy+WACztJLXAHBO5hK79T1Hc77PgQZkyDGA5Ag9xAvRpglvLNxhH/zSmZ70/pZ31dHg=="; }; } { @@ -1054,7 +1054,7 @@ path = fetchurl { name = "eslint_plugin_jsx_a11y___eslint_plugin_jsx_a11y_6.2.3.tgz"; url = "https://registry.yarnpkg.com/eslint-plugin-jsx-a11y/-/eslint-plugin-jsx-a11y-6.2.3.tgz"; - sha1 = "b872a09d5de51af70a97db1eea7dc933043708aa"; + sha512 = "CawzfGt9w83tyuVekn0GDPU9ytYtxyxyFZ3aSWROmnRRFQFT2BiPJd7jvRdzNDi6oLWaS2asMeYSNMjWTV4eNg=="; }; } { @@ -1062,7 +1062,7 @@ path = fetchurl { name = "eslint_plugin_node___eslint_plugin_node_8.0.1.tgz"; url = "https://registry.yarnpkg.com/eslint-plugin-node/-/eslint-plugin-node-8.0.1.tgz"; - sha1 = "55ae3560022863d141fa7a11799532340a685964"; + sha512 = "ZjOjbjEi6jd82rIpFSgagv4CHWzG9xsQAVp1ZPlhRnnYxcTgENUVBvhYmkQ7GvT1QFijUSo69RaiOJKhMu6i8w=="; }; } { @@ -1070,7 +1070,7 @@ path = fetchurl { name = "eslint_plugin_promise___eslint_plugin_promise_4.2.1.tgz"; url = "https://registry.yarnpkg.com/eslint-plugin-promise/-/eslint-plugin-promise-4.2.1.tgz"; - sha1 = "845fd8b2260ad8f82564c1222fce44ad71d9418a"; + sha512 = "VoM09vT7bfA7D+upt+FjeBO5eHIJQBUWki1aPvB+vbNiHS3+oGIJGIeyBtKQTME6UPXXy3vV07OL1tHd3ANuDw=="; }; } { @@ -1078,7 +1078,7 @@ path = fetchurl { name = "eslint_plugin_react___eslint_plugin_react_7.20.0.tgz"; url = "https://registry.yarnpkg.com/eslint-plugin-react/-/eslint-plugin-react-7.20.0.tgz"; - sha1 = "f98712f0a5e57dfd3e5542ef0604b8739cd47be3"; + sha512 = "rqe1abd0vxMjmbPngo4NaYxTcR3Y4Hrmc/jg4T+sYz63yqlmJRknpEQfmWY+eDWPuMmix6iUIK+mv0zExjeLgA=="; }; } { @@ -1086,7 +1086,7 @@ path = fetchurl { name = "eslint_plugin_standard___eslint_plugin_standard_4.0.1.tgz"; url = "https://registry.yarnpkg.com/eslint-plugin-standard/-/eslint-plugin-standard-4.0.1.tgz"; - sha1 = "ff0519f7ffaff114f76d1bd7c3996eef0f6e20b4"; + sha512 = "v/KBnfyaOMPmZc/dmc6ozOdWqekGp7bBGq4jLAecEfPGmfKiWS4sA8sC0LqiV9w5qmXAtXVn4M3p1jSyhY85SQ=="; }; } { @@ -1094,7 +1094,7 @@ path = fetchurl { name = "eslint_scope___eslint_scope_3.7.3.tgz"; url = "https://registry.yarnpkg.com/eslint-scope/-/eslint-scope-3.7.3.tgz"; - sha1 = "bb507200d3d17f60247636160b4826284b108535"; + sha512 = "W+B0SvF4gamyCTmUc+uITPY0989iXVfKvhwtmJocTaYoc/3khEHmEmvfY/Gn9HA9VV75jrQECsHizkNw1b68FA=="; }; } { @@ -1102,7 +1102,7 @@ path = fetchurl { name = "eslint_scope___eslint_scope_4.0.3.tgz"; url = "https://registry.yarnpkg.com/eslint-scope/-/eslint-scope-4.0.3.tgz"; - sha1 = "ca03833310f6889a3264781aa82e63eb9cfe7848"; + sha512 = "p7VutNr1O/QrxysMo3E45FjYDTeXBy0iTltPFNSqKAIfjDSXC+4dj+qfyuD8bfAXrW/y6lW3O76VaYNPKfpKrg=="; }; } { @@ -1110,7 +1110,7 @@ path = fetchurl { name = "eslint_utils___eslint_utils_1.4.3.tgz"; url = "https://registry.yarnpkg.com/eslint-utils/-/eslint-utils-1.4.3.tgz"; - sha1 = "74fec7c54d0776b6f67e0251040b5806564e981f"; + sha512 = "fbBN5W2xdY45KulGXmLHZ3c3FHfVYmKg0IrAKGOkT/464PQsx2UeIzfz1RmEci+KLm1bBaAzZAh8+/E+XAeZ8Q=="; }; } { @@ -1118,7 +1118,7 @@ path = fetchurl { name = "eslint_visitor_keys___eslint_visitor_keys_1.1.0.tgz"; url = "https://registry.yarnpkg.com/eslint-visitor-keys/-/eslint-visitor-keys-1.1.0.tgz"; - sha1 = "e2a82cea84ff246ad6fb57f9bde5b46621459ec2"; + sha512 = "8y9YjtM1JBJU/A9Kc+SbaOV4y29sSWckBwMHa+FGtVj5gN/sbnKDf6xJUl+8g7FAij9LVaP8C24DUiH/f/2Z9A=="; }; } { @@ -1126,7 +1126,7 @@ path = fetchurl { name = "eslint___eslint_4.19.1.tgz"; url = "https://registry.yarnpkg.com/eslint/-/eslint-4.19.1.tgz"; - sha1 = "32d1d653e1d90408854bfb296f076ec7e186a300"; + sha512 = "bT3/1x1EbZB7phzYu7vCr1v3ONuzDtX8WjuM9c0iYxe+cq+pwcKEoQjl7zd3RpC6YOLgnSy3cTN58M2jcoPDIQ=="; }; } { @@ -1134,7 +1134,7 @@ path = fetchurl { name = "eslint___eslint_5.16.0.tgz"; url = "https://registry.yarnpkg.com/eslint/-/eslint-5.16.0.tgz"; - sha1 = "a1e3ac1aae4a3fbd8296fcf8f7ab7314cbb6abea"; + sha512 = "S3Rz11i7c8AA5JPv7xAH+dOyq/Cu/VXHiHXBPOU1k/JAM5dXqQPt3qcrhpHSorXmrpu2g0gkIBVXAqCpzfoZIg=="; }; } { @@ -1142,7 +1142,7 @@ path = fetchurl { name = "espree___espree_3.5.4.tgz"; url = "https://registry.yarnpkg.com/espree/-/espree-3.5.4.tgz"; - sha1 = "b0f447187c8a8bed944b815a660bddf5deb5d1a7"; + sha512 = "yAcIQxtmMiB/jL32dzEp2enBeidsB7xWPLNiw3IIkpVds1P+h7qF9YwJq1yUNzp2OKXgAprs4F61ih66UsoD1A=="; }; } { @@ -1150,7 +1150,7 @@ path = fetchurl { name = "espree___espree_5.0.1.tgz"; url = "https://registry.yarnpkg.com/espree/-/espree-5.0.1.tgz"; - sha1 = "5d6526fa4fc7f0788a5cf75b15f30323e2f81f7a"; + sha512 = "qWAZcWh4XE/RwzLJejfcofscgMc9CamR6Tn1+XRXNzrvUSSbiAjGOI/fggztjIi7y9VLPqnICMIPiGyr8JaZ0A=="; }; } { @@ -1158,7 +1158,7 @@ path = fetchurl { name = "esprima___esprima_4.0.1.tgz"; url = "https://registry.yarnpkg.com/esprima/-/esprima-4.0.1.tgz"; - sha1 = "13b04cdb3e6c5d19df91ab6987a8695619b0aa71"; + sha512 = "eGuFFw7Upda+g4p+QHvnW0RyTX/SVeJBDM/gCtMARO0cLuT2HcEKnTPvhjV6aGeqrCB/sbNop0Kszm0jsaWU4A=="; }; } { @@ -1166,7 +1166,7 @@ path = fetchurl { name = "esquery___esquery_1.3.1.tgz"; url = "https://registry.yarnpkg.com/esquery/-/esquery-1.3.1.tgz"; - sha1 = "b78b5828aa8e214e29fb74c4d5b752e1c033da57"; + sha512 = "olpvt9QG0vniUBZspVRN6lwB7hOZoTRtT+jzR+tS4ffYx2mzbw+z0XCOk44aaLYKApNX5nMm+E+P6o25ip/DHQ=="; }; } { @@ -1174,7 +1174,7 @@ path = fetchurl { name = "esrecurse___esrecurse_4.2.1.tgz"; url = "https://registry.yarnpkg.com/esrecurse/-/esrecurse-4.2.1.tgz"; - sha1 = "007a3b9fdbc2b3bb87e4879ea19c92fdbd3942cf"; + sha512 = "64RBB++fIOAXPw3P9cy89qfMlvZEXZkqqJkjqqXIvzP5ezRZjW+lPWjw35UX/3EhUPFYbg5ER4JYgDw4007/DQ=="; }; } { @@ -1182,7 +1182,7 @@ path = fetchurl { name = "estraverse___estraverse_4.3.0.tgz"; url = "https://registry.yarnpkg.com/estraverse/-/estraverse-4.3.0.tgz"; - sha1 = "398ad3f3c5a24948be7725e83d11a7de28cdbd1d"; + sha512 = "39nnKffWz8xN1BU/2c79n9nB9HDzo0niYUqx6xyqUnyoAnQyyWpOTdZEeiCch8BBu515t4wp9ZmgVfVhn9EBpw=="; }; } { @@ -1190,7 +1190,7 @@ path = fetchurl { name = "estraverse___estraverse_5.1.0.tgz"; url = "https://registry.yarnpkg.com/estraverse/-/estraverse-5.1.0.tgz"; - sha1 = "374309d39fd935ae500e7b92e8a6b4c720e59642"; + sha512 = "FyohXK+R0vE+y1nHLoBM7ZTyqRpqAlhdZHCWIWEviFLiGB8b04H6bQs8G+XTthacvT8VuwvteiP7RJSxMs8UEw=="; }; } { @@ -1198,7 +1198,7 @@ path = fetchurl { name = "esutils___esutils_2.0.3.tgz"; url = "https://registry.yarnpkg.com/esutils/-/esutils-2.0.3.tgz"; - sha1 = "74d2eb4de0b8da1293711910d50775b9b710ef64"; + sha512 = "kVscqXk4OCp68SZ0dkgEKVi6/8ij300KBWTJq32P/dYeWTSwK41WyTxalN1eRmA5Z9UU/LX9D7FWSmV9SAYx6g=="; }; } { @@ -1206,7 +1206,7 @@ path = fetchurl { name = "execa___execa_0.7.0.tgz"; url = "https://registry.yarnpkg.com/execa/-/execa-0.7.0.tgz"; - sha1 = "944becd34cc41ee32a63a9faf27ad5a65fc59777"; + sha1 = "lEvs00zEHuMqY6n68nrVpl/Fl3c="; }; } { @@ -1214,7 +1214,7 @@ path = fetchurl { name = "execa___execa_1.0.0.tgz"; url = "https://registry.yarnpkg.com/execa/-/execa-1.0.0.tgz"; - sha1 = "c6236a5bb4df6d6f15e88e7f017798216749ddd8"; + sha512 = "adbxcyWV46qiHyvSp50TKt05tB4tK3HcmF7/nxfAdhnox83seTDbwnaqKO4sXRy7roHAIFqJP/Rw/AuEbX61LA=="; }; } { @@ -1222,7 +1222,7 @@ path = fetchurl { name = "expand_brackets___expand_brackets_2.1.4.tgz"; url = "https://registry.yarnpkg.com/expand-brackets/-/expand-brackets-2.1.4.tgz"; - sha1 = "b77735e315ce30f6b6eff0f83b04151a22449622"; + sha1 = "t3c14xXOMPa27/D4OwQVGiJEliI="; }; } { @@ -1230,7 +1230,7 @@ path = fetchurl { name = "extend_shallow___extend_shallow_2.0.1.tgz"; url = "https://registry.yarnpkg.com/extend-shallow/-/extend-shallow-2.0.1.tgz"; - sha1 = "51af7d614ad9a9f610ea1bafbb989d6b1c56890f"; + sha1 = "Ua99YUrZqfYQ6huvu5idaxxWiQ8="; }; } { @@ -1238,7 +1238,7 @@ path = fetchurl { name = "extend_shallow___extend_shallow_3.0.2.tgz"; url = "https://registry.yarnpkg.com/extend-shallow/-/extend-shallow-3.0.2.tgz"; - sha1 = "26a71aaf073b39fb2127172746131c2704028db8"; + sha1 = "Jqcarwc7OfshJxcnRhMcJwQCjbg="; }; } { @@ -1246,7 +1246,7 @@ path = fetchurl { name = "external_editor___external_editor_2.2.0.tgz"; url = "https://registry.yarnpkg.com/external-editor/-/external-editor-2.2.0.tgz"; - sha1 = "045511cfd8d133f3846673d1047c154e214ad3d5"; + sha512 = "bSn6gvGxKt+b7+6TKEv1ZycHleA7aHhRHyAqJyp5pbUFuYYNIzpZnQDk7AsYckyWdEnTeAnay0aCy2aV6iTk9A=="; }; } { @@ -1254,7 +1254,7 @@ path = fetchurl { name = "external_editor___external_editor_3.1.0.tgz"; url = "https://registry.yarnpkg.com/external-editor/-/external-editor-3.1.0.tgz"; - sha1 = "cb03f740befae03ea4d283caed2741a83f335495"; + sha512 = "hMQ4CX1p1izmuLYyZqLMO/qGNw10wSv9QDCPfzXfyFrOaCSSoRfqE1Kf1s5an66J5JZC62NewG+mK49jOCtQew=="; }; } { @@ -1262,7 +1262,7 @@ path = fetchurl { name = "extglob___extglob_2.0.4.tgz"; url = "https://registry.yarnpkg.com/extglob/-/extglob-2.0.4.tgz"; - sha1 = "ad00fe4dc612a9232e8718711dc5cb5ab0285543"; + sha512 = "Nmb6QXkELsuBr24CJSkilo6UHHgbekK5UiZgfE6UHD3Eb27YC6oD+bhcT+tJ6cl8dmsgdQxnWlcry8ksBIBLpw=="; }; } { @@ -1270,7 +1270,7 @@ path = fetchurl { name = "fast_deep_equal___fast_deep_equal_1.1.0.tgz"; url = "https://registry.yarnpkg.com/fast-deep-equal/-/fast-deep-equal-1.1.0.tgz"; - sha1 = "c053477817c86b51daa853c81e059b733d023614"; + sha1 = "wFNHeBfIa1HaqFPIHgWbcz0CNhQ="; }; } { @@ -1278,7 +1278,7 @@ path = fetchurl { name = "fast_deep_equal___fast_deep_equal_3.1.1.tgz"; url = "https://registry.yarnpkg.com/fast-deep-equal/-/fast-deep-equal-3.1.1.tgz"; - sha1 = "545145077c501491e33b15ec408c294376e94ae4"; + sha512 = "8UEa58QDLauDNfpbrX55Q9jrGHThw2ZMdOky5Gl1CDtVeJDPVrG4Jxx1N8jw2gkWaff5UUuX1KJd+9zGe2B+ZA=="; }; } { @@ -1286,7 +1286,7 @@ path = fetchurl { name = "fast_json_stable_stringify___fast_json_stable_stringify_2.1.0.tgz"; url = "https://registry.yarnpkg.com/fast-json-stable-stringify/-/fast-json-stable-stringify-2.1.0.tgz"; - sha1 = "874bf69c6f404c2b5d99c481341399fd55892633"; + sha512 = "lhd/wF+Lk98HZoTCtlVraHtfh5XYijIjalXck7saUtuanSDyLMxnHhSXEDJqHxD7msR8D0uCmqlkwjCV8xvwHw=="; }; } { @@ -1294,7 +1294,7 @@ path = fetchurl { name = "fast_levenshtein___fast_levenshtein_2.0.6.tgz"; url = "https://registry.yarnpkg.com/fast-levenshtein/-/fast-levenshtein-2.0.6.tgz"; - sha1 = "3d8a5c66883a16a30ca8643e851f19baa7797917"; + sha1 = "PYpcZog6FqMMqGQ+hR8Zuqd5eRc="; }; } { @@ -1302,7 +1302,7 @@ path = fetchurl { name = "figures___figures_1.7.0.tgz"; url = "https://registry.yarnpkg.com/figures/-/figures-1.7.0.tgz"; - sha1 = "cbe1e3affcf1cd44b80cadfed28dc793a9701d2e"; + sha1 = "y+Hjr/zxzUS4DK3+0o3Hk6lwHS4="; }; } { @@ -1310,7 +1310,7 @@ path = fetchurl { name = "figures___figures_2.0.0.tgz"; url = "https://registry.yarnpkg.com/figures/-/figures-2.0.0.tgz"; - sha1 = "3ab1a2d2a62c8bfb431a0c94cb797a2fce27c962"; + sha1 = "OrGi0qYsi/tDGgyUy3l6L84nyWI="; }; } { @@ -1318,7 +1318,7 @@ path = fetchurl { name = "file_entry_cache___file_entry_cache_2.0.0.tgz"; url = "https://registry.yarnpkg.com/file-entry-cache/-/file-entry-cache-2.0.0.tgz"; - sha1 = "c392990c3e684783d838b8c84a45d8a048458361"; + sha1 = "w5KZDD5oR4PYOLjISkXYoEhFg2E="; }; } { @@ -1326,7 +1326,7 @@ path = fetchurl { name = "file_entry_cache___file_entry_cache_5.0.1.tgz"; url = "https://registry.yarnpkg.com/file-entry-cache/-/file-entry-cache-5.0.1.tgz"; - sha1 = "ca0f6efa6dd3d561333fb14515065c2fafdf439c"; + sha512 = "bCg29ictuBaKUwwArK4ouCaqDgLZcysCFLmM/Yn/FDoqndh/9vNuQfXRDvTuXKLxfD/JtZQGKFT8MGcJBK644g=="; }; } { @@ -1334,7 +1334,7 @@ path = fetchurl { name = "fill_range___fill_range_4.0.0.tgz"; url = "https://registry.yarnpkg.com/fill-range/-/fill-range-4.0.0.tgz"; - sha1 = "d544811d428f98eb06a63dc402d2403c328c38f7"; + sha1 = "1USBHUKPmOsGpj3EAtJAPDKMOPc="; }; } { @@ -1342,7 +1342,7 @@ path = fetchurl { name = "find_up___find_up_2.1.0.tgz"; url = "https://registry.yarnpkg.com/find-up/-/find-up-2.1.0.tgz"; - sha1 = "45d1b7e506c717ddd482775a2b77920a3c0c57a7"; + sha1 = "RdG35QbHF93UgndaK3eSCjwMV6c="; }; } { @@ -1350,7 +1350,7 @@ path = fetchurl { name = "find_up___find_up_3.0.0.tgz"; url = "https://registry.yarnpkg.com/find-up/-/find-up-3.0.0.tgz"; - sha1 = "49169f1d7993430646da61ecc5ae355c21c97b73"; + sha512 = "1yD6RmLI1XBfxugvORwlck6f75tYL+iR0jqwsOrOxMZyGYqUuDhJ0l4AXdO1iX/FTs9cBAMEk1gWSEx1kSbylg=="; }; } { @@ -1358,7 +1358,7 @@ path = fetchurl { name = "flat_cache___flat_cache_1.3.4.tgz"; url = "https://registry.yarnpkg.com/flat-cache/-/flat-cache-1.3.4.tgz"; - sha1 = "2c2ef77525cc2929007dfffa1dd314aa9c9dee6f"; + sha512 = "VwyB3Lkgacfik2vhqR4uv2rvebqmDvFu4jlN/C1RzWoJEo8I7z4Q404oiqYCkq41mni8EzQnm95emU9seckwtg=="; }; } { @@ -1366,7 +1366,7 @@ path = fetchurl { name = "flat_cache___flat_cache_2.0.1.tgz"; url = "https://registry.yarnpkg.com/flat-cache/-/flat-cache-2.0.1.tgz"; - sha1 = "5d296d6f04bda44a4630a301413bdbc2ec085ec0"; + sha512 = "LoQe6yDuUMDzQAEH8sgmh4Md6oZnc/7PjtwjNFSzveXqSHt6ka9fPBuso7IGf9Rz4uqnSnWiFH2B/zj24a5ReA=="; }; } { @@ -1374,7 +1374,7 @@ path = fetchurl { name = "flatted___flatted_2.0.2.tgz"; url = "https://registry.yarnpkg.com/flatted/-/flatted-2.0.2.tgz"; - sha1 = "4575b21e2bcee7434aa9be662f4b7b5f9c2b5138"; + sha512 = "r5wGx7YeOwNWNlCA0wQ86zKyDLMQr+/RB8xy74M4hTphfmjlijTSSXGuH8rnvKZnfT9i+75zmd8jcKdMR4O6jA=="; }; } { @@ -1382,7 +1382,7 @@ path = fetchurl { name = "fn_name___fn_name_2.0.1.tgz"; url = "https://registry.yarnpkg.com/fn-name/-/fn-name-2.0.1.tgz"; - sha1 = "5214d7537a4d06a4a301c0cc262feb84188002e7"; + sha1 = "UhTXU3pNBqSjAcDMJi/rhBiAAuc="; }; } { @@ -1390,7 +1390,7 @@ path = fetchurl { name = "for_in___for_in_1.0.2.tgz"; url = "https://registry.yarnpkg.com/for-in/-/for-in-1.0.2.tgz"; - sha1 = "81068d295a8142ec0ac726c6e2200c30fb6d5e80"; + sha1 = "gQaNKVqBQuwKxybG4iAMMPttXoA="; }; } { @@ -1398,7 +1398,7 @@ path = fetchurl { name = "fragment_cache___fragment_cache_0.2.1.tgz"; url = "https://registry.yarnpkg.com/fragment-cache/-/fragment-cache-0.2.1.tgz"; - sha1 = "4290fad27f13e89be7f33799c6bc5a0abfff0d19"; + sha1 = "QpD60n8T6Jvn8zeZxrxaCr//DRk="; }; } { @@ -1406,7 +1406,7 @@ path = fetchurl { name = "fs.realpath___fs.realpath_1.0.0.tgz"; url = "https://registry.yarnpkg.com/fs.realpath/-/fs.realpath-1.0.0.tgz"; - sha1 = "1504ad2523158caa40db4a2787cb01411994ea4f"; + sha1 = "FQStJSMVjKpA20onh8sBQRmU6k8="; }; } { @@ -1414,7 +1414,7 @@ path = fetchurl { name = "function_bind___function_bind_1.1.1.tgz"; url = "https://registry.yarnpkg.com/function-bind/-/function-bind-1.1.1.tgz"; - sha1 = "a56899d3ea3c9bab874bb9773b7c5ede92f4895d"; + sha512 = "yIovAzMX49sF8Yl58fSCWJ5svSLuaibPxXQJFLmBObTuCr0Mf1KiPopGM9NiFjiYBCbfaa2Fh6breQ6ANVTI0A=="; }; } { @@ -1422,7 +1422,7 @@ path = fetchurl { name = "functional_red_black_tree___functional_red_black_tree_1.0.1.tgz"; url = "https://registry.yarnpkg.com/functional-red-black-tree/-/functional-red-black-tree-1.0.1.tgz"; - sha1 = "1b0ab3bd553b2a0d6399d29c0e3ea0b252078327"; + sha1 = "GwqzvVU7Kg1jmdKcDj6gslIHgyc="; }; } { @@ -1430,7 +1430,7 @@ path = fetchurl { name = "g_status___g_status_2.0.2.tgz"; url = "https://registry.yarnpkg.com/g-status/-/g-status-2.0.2.tgz"; - sha1 = "270fd32119e8fc9496f066fe5fe88e0a6bc78b97"; + sha512 = "kQoE9qH+T1AHKgSSD0Hkv98bobE90ILQcXAF4wvGgsr7uFqNvwmh8j+Lq3l0RVt3E3HjSbv2B9biEGcEtpHLCA=="; }; } { @@ -1438,7 +1438,7 @@ path = fetchurl { name = "get_caller_file___get_caller_file_1.0.3.tgz"; url = "https://registry.yarnpkg.com/get-caller-file/-/get-caller-file-1.0.3.tgz"; - sha1 = "f978fa4c90d1dfe7ff2d6beda2a515e713bdcf4a"; + sha512 = "3t6rVToeoZfYSGd8YoLFR2DJkiQrIiUrGcjvFX2mDw3bn6k2OtwHN0TNCLbBO+w8qTvimhDkv+LSscbJY1vE6w=="; }; } { @@ -1446,7 +1446,7 @@ path = fetchurl { name = "get_own_enumerable_property_symbols___get_own_enumerable_property_symbols_3.0.2.tgz"; url = "https://registry.yarnpkg.com/get-own-enumerable-property-symbols/-/get-own-enumerable-property-symbols-3.0.2.tgz"; - sha1 = "b5fde77f22cbe35f390b4e089922c50bce6ef664"; + sha512 = "I0UBV/XOz1XkIJHEUDMZAbzCThU/H8DxmSfmdGcKPnVhu2VfFqr34jr9777IyaTYvxjedWhqVIilEDsCdP5G6g=="; }; } { @@ -1454,7 +1454,7 @@ path = fetchurl { name = "get_stdin___get_stdin_5.0.1.tgz"; url = "https://registry.yarnpkg.com/get-stdin/-/get-stdin-5.0.1.tgz"; - sha1 = "122e161591e21ff4c52530305693f20e6393a398"; + sha1 = "Ei4WFZHiH/TFJTAwVpPyDmOTo5g="; }; } { @@ -1462,7 +1462,7 @@ path = fetchurl { name = "get_stdin___get_stdin_6.0.0.tgz"; url = "https://registry.yarnpkg.com/get-stdin/-/get-stdin-6.0.0.tgz"; - sha1 = "9e09bf712b360ab9225e812048f71fde9c89657b"; + sha512 = "jp4tHawyV7+fkkSKyvjuLZswblUtz+SQKzSWnBbii16BuZksJlU1wuBYXY75r+duh/llF1ur6oNwi+2ZzjKZ7g=="; }; } { @@ -1470,7 +1470,7 @@ path = fetchurl { name = "get_stream___get_stream_3.0.0.tgz"; url = "https://registry.yarnpkg.com/get-stream/-/get-stream-3.0.0.tgz"; - sha1 = "8e943d1358dc37555054ecbe2edb05aa174ede14"; + sha1 = "jpQ9E1jcN1VQVOy+LtsFqhdO3hQ="; }; } { @@ -1478,7 +1478,7 @@ path = fetchurl { name = "get_stream___get_stream_4.1.0.tgz"; url = "https://registry.yarnpkg.com/get-stream/-/get-stream-4.1.0.tgz"; - sha1 = "c1b255575f3dc21d59bfc79cd3d2b46b1c3a54b5"; + sha512 = "GMat4EJ5161kIy2HevLlr4luNjBgvmj413KaQA7jt4V8B4RDsfpHk7WQ9GVqfYyyx8OS/L66Kox+rJRNklLK7w=="; }; } { @@ -1486,7 +1486,7 @@ path = fetchurl { name = "get_value___get_value_2.0.6.tgz"; url = "https://registry.yarnpkg.com/get-value/-/get-value-2.0.6.tgz"; - sha1 = "dc15ca1c672387ca76bd37ac0a395ba2042a2c28"; + sha1 = "3BXKHGcjh8p2vTesCjlbogQqLCg="; }; } { @@ -1494,7 +1494,7 @@ path = fetchurl { name = "glob___glob_7.1.6.tgz"; url = "https://registry.yarnpkg.com/glob/-/glob-7.1.6.tgz"; - sha1 = "141f33b81a7c2492e125594307480c46679278a6"; + sha512 = "LwaxwyZ72Lk7vZINtNNrywX0ZuLyStrdDtabefZKAY5ZGJhVtgdznluResxNmPitE0SAO+O26sWTHeKSI2wMBA=="; }; } { @@ -1502,7 +1502,7 @@ path = fetchurl { name = "glob___glob_7.0.6.tgz"; url = "https://registry.yarnpkg.com/glob/-/glob-7.0.6.tgz"; - sha1 = "211bafaf49e525b8cd93260d14ab136152b3f57a"; + sha1 = "IRuvr0nlJbjNkyYNFKsTYVKz9Xo="; }; } { @@ -1510,7 +1510,7 @@ path = fetchurl { name = "globals___globals_11.12.0.tgz"; url = "https://registry.yarnpkg.com/globals/-/globals-11.12.0.tgz"; - sha1 = "ab8795338868a0babd8525758018c2a7eb95c42e"; + sha512 = "WOBp/EEGUiIsJSp7wcv/y6MO+lV9UoncWqxuFfm8eBwzWNgyfBd6Gz+IeKQ9jCmyhoH99g15M3T+QaVHFjizVA=="; }; } { @@ -1518,7 +1518,7 @@ path = fetchurl { name = "globby___globby_6.1.0.tgz"; url = "https://registry.yarnpkg.com/globby/-/globby-6.1.0.tgz"; - sha1 = "f5a6d70e8395e21c858fb0489d64df02424d506c"; + sha1 = "9abXDoOV4hyFj7BInWTfAkJNUGw="; }; } { @@ -1526,7 +1526,7 @@ path = fetchurl { name = "graceful_fs___graceful_fs_4.2.4.tgz"; url = "https://registry.yarnpkg.com/graceful-fs/-/graceful-fs-4.2.4.tgz"; - sha1 = "2256bde14d3632958c465ebc96dc467ca07a29fb"; + sha512 = "WjKPNJF79dtJAVniUlGGWHYGz2jWxT6VhN/4m1NdkbZ2nOsEF+cI1Edgql5zCRhs/VsQYRvrXctxktVXZUkixw=="; }; } { @@ -1534,7 +1534,7 @@ path = fetchurl { name = "has_ansi___has_ansi_2.0.0.tgz"; url = "https://registry.yarnpkg.com/has-ansi/-/has-ansi-2.0.0.tgz"; - sha1 = "34f5049ce1ecdf2b0649af3ef24e45ed35416d91"; + sha1 = "NPUEnOHs3ysGSa8+8k5F7TVBbZE="; }; } { @@ -1542,7 +1542,7 @@ path = fetchurl { name = "has_flag___has_flag_2.0.0.tgz"; url = "https://registry.yarnpkg.com/has-flag/-/has-flag-2.0.0.tgz"; - sha1 = "e8207af1cc7b30d446cc70b734b5e8be18f88d51"; + sha1 = "6CB68cx7MNRGzHC3NLXovhj4jVE="; }; } { @@ -1550,7 +1550,7 @@ path = fetchurl { name = "has_flag___has_flag_3.0.0.tgz"; url = "https://registry.yarnpkg.com/has-flag/-/has-flag-3.0.0.tgz"; - sha1 = "b5d454dc2199ae225699f3467e5a07f3b955bafd"; + sha1 = "tdRU3CGZriJWmfNGfloH87lVuv0="; }; } { @@ -1558,7 +1558,7 @@ path = fetchurl { name = "has_symbols___has_symbols_1.0.1.tgz"; url = "https://registry.yarnpkg.com/has-symbols/-/has-symbols-1.0.1.tgz"; - sha1 = "9f5214758a44196c406d9bd76cebf81ec2dd31e8"; + sha512 = "PLcsoqu++dmEIZB+6totNFKq/7Do+Z0u4oT0zKOJNl3lYK6vGwwu2hjHs+68OEZbTjiUE9bgOABXbP/GvrS0Kg=="; }; } { @@ -1566,7 +1566,7 @@ path = fetchurl { name = "has_value___has_value_0.3.1.tgz"; url = "https://registry.yarnpkg.com/has-value/-/has-value-0.3.1.tgz"; - sha1 = "7b1f58bada62ca827ec0a2078025654845995e1f"; + sha1 = "ex9YutpiyoJ+wKIHgCVlSEWZXh8="; }; } { @@ -1574,7 +1574,7 @@ path = fetchurl { name = "has_value___has_value_1.0.0.tgz"; url = "https://registry.yarnpkg.com/has-value/-/has-value-1.0.0.tgz"; - sha1 = "18b281da585b1c5c51def24c930ed29a0be6b177"; + sha1 = "GLKB2lhbHFxR3vJMkw7SmgvmsXc="; }; } { @@ -1582,7 +1582,7 @@ path = fetchurl { name = "has_values___has_values_0.1.4.tgz"; url = "https://registry.yarnpkg.com/has-values/-/has-values-0.1.4.tgz"; - sha1 = "6d61de95d91dfca9b9a02089ad384bff8f62b771"; + sha1 = "bWHeldkd/Km5oCCJrThL/49it3E="; }; } { @@ -1590,7 +1590,7 @@ path = fetchurl { name = "has_values___has_values_1.0.0.tgz"; url = "https://registry.yarnpkg.com/has-values/-/has-values-1.0.0.tgz"; - sha1 = "95b0b63fec2146619a6fe57fe75628d5a39efe4f"; + sha1 = "lbC2P+whRmGab+V/51Yo1aOe/k8="; }; } { @@ -1598,7 +1598,7 @@ path = fetchurl { name = "has___has_1.0.3.tgz"; url = "https://registry.yarnpkg.com/has/-/has-1.0.3.tgz"; - sha1 = "722d7cbfc1f6aa8241f16dd814e011e1f41e8796"; + sha512 = "f2dvO0VU6Oej7RkWJGrehjbzMAjFp5/VKPp5tTpWIV4JHHZK1/BxbFRtf/siA2SWTe09caDmVtYYzWEIbBS4zw=="; }; } { @@ -1606,7 +1606,7 @@ path = fetchurl { name = "hosted_git_info___hosted_git_info_2.8.8.tgz"; url = "https://registry.yarnpkg.com/hosted-git-info/-/hosted-git-info-2.8.8.tgz"; - sha1 = "7539bd4bc1e0e0a895815a2e0262420b12858488"; + sha512 = "f/wzC2QaWBs7t9IYqB4T3sR1xviIViXJRJTWBlx2Gf3g0Xi5vI7Yy4koXQ1c9OYDGHN9sBy1DQ2AB8fqZBWhUg=="; }; } { @@ -1614,7 +1614,7 @@ path = fetchurl { name = "husky___husky_1.3.1.tgz"; url = "https://registry.yarnpkg.com/husky/-/husky-1.3.1.tgz"; - sha1 = "26823e399300388ca2afff11cfa8a86b0033fae0"; + sha512 = "86U6sVVVf4b5NYSZ0yvv88dRgBSSXXmHaiq5pP4KDj5JVzdwKgBjEtUPOm8hcoytezFwbU+7gotXNhpHdystlg=="; }; } { @@ -1622,7 +1622,7 @@ path = fetchurl { name = "iconv_lite___iconv_lite_0.4.24.tgz"; url = "https://registry.yarnpkg.com/iconv-lite/-/iconv-lite-0.4.24.tgz"; - sha1 = "2022b4b25fbddc21d2f524974a474aafe733908b"; + sha512 = "v3MXnZAcvnywkTUEZomIActle7RXXeedOR31wwl7VlyoXO4Qi9arvSenNQWne1TcRwhCL1HwLI21bEqdpj8/rA=="; }; } { @@ -1630,7 +1630,7 @@ path = fetchurl { name = "ignore___ignore_3.3.10.tgz"; url = "https://registry.yarnpkg.com/ignore/-/ignore-3.3.10.tgz"; - sha1 = "0a97fb876986e8081c631160f8f9f389157f0043"; + sha512 = "Pgs951kaMm5GXP7MOvxERINe3gsaVjUWFm+UZPSq9xYriQAksyhg0csnS0KXSNRD5NmNdapXEpjxG49+AKh/ug=="; }; } { @@ -1638,7 +1638,7 @@ path = fetchurl { name = "ignore___ignore_4.0.6.tgz"; url = "https://registry.yarnpkg.com/ignore/-/ignore-4.0.6.tgz"; - sha1 = "750e3db5862087b4737ebac8207ffd1ef27b25fc"; + sha512 = "cyFDKrqc/YdcWFniJhzI42+AzS+gNwmUzOSFcRCQYwySuBBBy/KjuxWLZ/FHEH6Moq1NizMOBWyTcv8O4OZIMg=="; }; } { @@ -1646,7 +1646,7 @@ path = fetchurl { name = "ignore___ignore_5.1.4.tgz"; url = "https://registry.yarnpkg.com/ignore/-/ignore-5.1.4.tgz"; - sha1 = "84b7b3dbe64552b6ef0eca99f6743dbec6d97adf"; + sha512 = "MzbUSahkTW1u7JpKKjY7LCARd1fU5W2rLdxlM4kdkayuCwZImjkpluF9CM1aLewYJguPDqewLam18Y6AU69A8A=="; }; } { @@ -1654,7 +1654,7 @@ path = fetchurl { name = "import_fresh___import_fresh_2.0.0.tgz"; url = "https://registry.yarnpkg.com/import-fresh/-/import-fresh-2.0.0.tgz"; - sha1 = "d81355c15612d386c61f9ddd3922d4304822a546"; + sha1 = "2BNVwVYS04bGH53dOSLUMEgipUY="; }; } { @@ -1662,7 +1662,7 @@ path = fetchurl { name = "import_fresh___import_fresh_3.2.1.tgz"; url = "https://registry.yarnpkg.com/import-fresh/-/import-fresh-3.2.1.tgz"; - sha1 = "633ff618506e793af5ac91bf48b72677e15cbe66"; + sha512 = "6e1q1cnWP2RXD9/keSkxHScg508CdXqXWgWBaETNhyuBFz+kUZlKboh+ISK+bU++DmbHimVBrOz/zzPe0sZ3sQ=="; }; } { @@ -1670,7 +1670,7 @@ path = fetchurl { name = "imurmurhash___imurmurhash_0.1.4.tgz"; url = "https://registry.yarnpkg.com/imurmurhash/-/imurmurhash-0.1.4.tgz"; - sha1 = "9218b9b2b928a238b13dc4fb6b6d576f231453ea"; + sha1 = "khi5srkoojixPcT7a21XbyMUU+o="; }; } { @@ -1678,7 +1678,7 @@ path = fetchurl { name = "indent_string___indent_string_3.2.0.tgz"; url = "https://registry.yarnpkg.com/indent-string/-/indent-string-3.2.0.tgz"; - sha1 = "4a5fd6d27cc332f37e5419a504dbb837105c9289"; + sha1 = "Sl/W0nzDMvN+VBmlBNu4NxBckok="; }; } { @@ -1686,7 +1686,7 @@ path = fetchurl { name = "inflight___inflight_1.0.6.tgz"; url = "https://registry.yarnpkg.com/inflight/-/inflight-1.0.6.tgz"; - sha1 = "49bd6331d7d02d0c09bc910a1075ba8165b56df9"; + sha1 = "Sb1jMdfQLQwJvJEKEHW6gWW1bfk="; }; } { @@ -1694,7 +1694,7 @@ path = fetchurl { name = "inherits___inherits_2.0.4.tgz"; url = "https://registry.yarnpkg.com/inherits/-/inherits-2.0.4.tgz"; - sha1 = "0fa2c64f932917c3433a0ded55363aae37416b7c"; + sha512 = "k/vGaX4/Yla3WzyMCvTQOXYeIHvqOKtnqBduzTHpzpQZzAskKMhZ2K+EnBiSM9zGSoIFeMpXKxa4dYeZIQqewQ=="; }; } { @@ -1702,7 +1702,7 @@ path = fetchurl { name = "inquirer___inquirer_3.3.0.tgz"; url = "https://registry.yarnpkg.com/inquirer/-/inquirer-3.3.0.tgz"; - sha1 = "9dd2f2ad765dcab1ff0443b491442a20ba227dc9"; + sha512 = "h+xtnyk4EwKvFWHrUYsWErEVR+igKtLdchu+o0Z1RL7VU/jVMFbYir2bp6bAj8efFNxWqHX0dIss6fJQ+/+qeQ=="; }; } { @@ -1710,7 +1710,7 @@ path = fetchurl { name = "inquirer___inquirer_6.5.2.tgz"; url = "https://registry.yarnpkg.com/inquirer/-/inquirer-6.5.2.tgz"; - sha1 = "ad50942375d036d327ff528c08bd5fab089928ca"; + sha512 = "cntlB5ghuB0iuO65Ovoi8ogLHiWGs/5yNrtUcKjFhSSiVeAIVpD7koaSU9RM8mpXw5YDi9RdYXGQMaOURB7ycQ=="; }; } { @@ -1718,7 +1718,7 @@ path = fetchurl { name = "internal_slot___internal_slot_1.0.2.tgz"; url = "https://registry.yarnpkg.com/internal-slot/-/internal-slot-1.0.2.tgz"; - sha1 = "9c2e9fb3cd8e5e4256c6f45fe310067fcfa378a3"; + sha512 = "2cQNfwhAfJIkU4KZPkDI+Gj5yNNnbqi40W9Gge6dfnk4TocEVm00B3bdiL+JINrbGJil2TeHvM4rETGzk/f/0g=="; }; } { @@ -1726,7 +1726,7 @@ path = fetchurl { name = "invert_kv___invert_kv_1.0.0.tgz"; url = "https://registry.yarnpkg.com/invert-kv/-/invert-kv-1.0.0.tgz"; - sha1 = "104a8e4aaca6d3d8cd157a8ef8bfab2d7a3ffdb6"; + sha1 = "EEqOSqym09jNFXqO+L+rLXo//bY="; }; } { @@ -1734,7 +1734,7 @@ path = fetchurl { name = "is_accessor_descriptor___is_accessor_descriptor_0.1.6.tgz"; url = "https://registry.yarnpkg.com/is-accessor-descriptor/-/is-accessor-descriptor-0.1.6.tgz"; - sha1 = "a9e12cb3ae8d876727eeef3843f8a0897b5c98d6"; + sha1 = "qeEss66Nh2cn7u84Q/igiXtcmNY="; }; } { @@ -1742,7 +1742,7 @@ path = fetchurl { name = "is_accessor_descriptor___is_accessor_descriptor_1.0.0.tgz"; url = "https://registry.yarnpkg.com/is-accessor-descriptor/-/is-accessor-descriptor-1.0.0.tgz"; - sha1 = "169c2f6d3df1f992618072365c9b0ea1f6878656"; + sha512 = "m5hnHTkcVsPfqx3AKlyttIPb7J+XykHvJP2B9bZDjlhLIoEq4XoK64Vg7boZlVWYK6LUY94dYPEE7Lh0ZkZKcQ=="; }; } { @@ -1750,7 +1750,7 @@ path = fetchurl { name = "is_arguments___is_arguments_1.0.4.tgz"; url = "https://registry.yarnpkg.com/is-arguments/-/is-arguments-1.0.4.tgz"; - sha1 = "3faf966c7cba0ff437fb31f6250082fcf0448cf3"; + sha512 = "xPh0Rmt8NE65sNzvyUmWgI1tz3mKq74lGA0mL8LYZcoIzKOzDh6HmrYm3d18k60nHerC8A9Km8kYu87zfSFnLA=="; }; } { @@ -1758,7 +1758,7 @@ path = fetchurl { name = "is_arrayish___is_arrayish_0.2.1.tgz"; url = "https://registry.yarnpkg.com/is-arrayish/-/is-arrayish-0.2.1.tgz"; - sha1 = "77c99840527aa8ecb1a8ba697b80645a7a926a9d"; + sha1 = "d8mYQFJ6qOyxqLppe4BkWnqSap0="; }; } { @@ -1766,7 +1766,7 @@ path = fetchurl { name = "is_buffer___is_buffer_1.1.6.tgz"; url = "https://registry.yarnpkg.com/is-buffer/-/is-buffer-1.1.6.tgz"; - sha1 = "efaa2ea9daa0d7ab2ea13a97b2b8ad51fefbe8be"; + sha512 = "NcdALwpXkTm5Zvvbk7owOUSvVvBKDgKP5/ewfXEznmQFfs4ZRmanOeKBTjRVjka3QFoN6XJ+9F3USqfHqTaU5w=="; }; } { @@ -1774,7 +1774,7 @@ path = fetchurl { name = "is_callable___is_callable_1.1.5.tgz"; url = "https://registry.yarnpkg.com/is-callable/-/is-callable-1.1.5.tgz"; - sha1 = "f7e46b596890456db74e7f6e976cb3273d06faab"; + sha512 = "ESKv5sMCJB2jnHTWZ3O5itG+O128Hsus4K4Qh1h2/cgn2vbgnLSVqfV46AeJA9D5EeeLa9w81KUXMtn34zhX+Q=="; }; } { @@ -1782,7 +1782,7 @@ path = fetchurl { name = "is_ci___is_ci_2.0.0.tgz"; url = "https://registry.yarnpkg.com/is-ci/-/is-ci-2.0.0.tgz"; - sha1 = "6bc6334181810e04b5c22b3d589fdca55026404c"; + sha512 = "YfJT7rkpQB0updsdHLGWrvhBJfcfzNNawYDNIyQXJz0IViGf75O8EBPKSdvw2rF+LGCsX4FZ8tcr3b19LcZq4w=="; }; } { @@ -1790,7 +1790,7 @@ path = fetchurl { name = "is_data_descriptor___is_data_descriptor_0.1.4.tgz"; url = "https://registry.yarnpkg.com/is-data-descriptor/-/is-data-descriptor-0.1.4.tgz"; - sha1 = "0b5ee648388e2c860282e793f1856fec3f301b56"; + sha1 = "C17mSDiOLIYCgueT8YVv7D8wG1Y="; }; } { @@ -1798,7 +1798,7 @@ path = fetchurl { name = "is_data_descriptor___is_data_descriptor_1.0.0.tgz"; url = "https://registry.yarnpkg.com/is-data-descriptor/-/is-data-descriptor-1.0.0.tgz"; - sha1 = "d84876321d0e7add03990406abbbbd36ba9268c7"; + sha512 = "jbRXy1FmtAoCjQkVmIVYwuuqDFUbaOeDjmed1tOGPrsMhtJA4rD9tkgA0F1qJ3gRFRXcHYVkdeaP50Q5rE/jLQ=="; }; } { @@ -1806,7 +1806,7 @@ path = fetchurl { name = "is_date_object___is_date_object_1.0.2.tgz"; url = "https://registry.yarnpkg.com/is-date-object/-/is-date-object-1.0.2.tgz"; - sha1 = "bda736f2cd8fd06d32844e7743bfa7494c3bfd7e"; + sha512 = "USlDT524woQ08aoZFzh3/Z6ch9Y/EWXEHQ/AaRN0SkKq4t2Jw2R2339tSXmwuVoY7LLlBCbOIlx2myP/L5zk0g=="; }; } { @@ -1814,7 +1814,7 @@ path = fetchurl { name = "is_descriptor___is_descriptor_0.1.6.tgz"; url = "https://registry.yarnpkg.com/is-descriptor/-/is-descriptor-0.1.6.tgz"; - sha1 = "366d8240dde487ca51823b1ab9f07a10a78251ca"; + sha512 = "avDYr0SB3DwO9zsMov0gKCESFYqCnE4hq/4z3TdUlukEy5t9C0YRq7HLrsN52NAcqXKaepeCD0n+B0arnVG3Hg=="; }; } { @@ -1822,7 +1822,7 @@ path = fetchurl { name = "is_descriptor___is_descriptor_1.0.2.tgz"; url = "https://registry.yarnpkg.com/is-descriptor/-/is-descriptor-1.0.2.tgz"; - sha1 = "3b159746a66604b04f8c81524ba365c5f14d86ec"; + sha512 = "2eis5WqQGV7peooDyLmNEPUrps9+SXX5c9pL3xEB+4e9HnGuDa7mB7kHxHw4CbqS9k1T2hOH3miL8n8WtiYVtg=="; }; } { @@ -1830,7 +1830,7 @@ path = fetchurl { name = "is_directory___is_directory_0.3.1.tgz"; url = "https://registry.yarnpkg.com/is-directory/-/is-directory-0.3.1.tgz"; - sha1 = "61339b6f2475fc772fd9c9d83f5c8575dc154ae1"; + sha1 = "YTObbyR1/Hcv2cnYP1yFddwVSuE="; }; } { @@ -1838,7 +1838,7 @@ path = fetchurl { name = "is_extendable___is_extendable_0.1.1.tgz"; url = "https://registry.yarnpkg.com/is-extendable/-/is-extendable-0.1.1.tgz"; - sha1 = "62b110e289a471418e3ec36a617d472e301dfc89"; + sha1 = "YrEQ4omkcUGOPsNqYX1HLjAd/Ik="; }; } { @@ -1846,7 +1846,7 @@ path = fetchurl { name = "is_extendable___is_extendable_1.0.1.tgz"; url = "https://registry.yarnpkg.com/is-extendable/-/is-extendable-1.0.1.tgz"; - sha1 = "a7470f9e426733d81bd81e1155264e3a3507cab4"; + sha512 = "arnXMxT1hhoKo9k1LZdmlNyJdDDfy2v0fXjFlmok4+i8ul/6WlbVge9bhM74OpNPQPMGUToDtz+KXa1PneJxOA=="; }; } { @@ -1854,7 +1854,7 @@ path = fetchurl { name = "is_extglob___is_extglob_2.1.1.tgz"; url = "https://registry.yarnpkg.com/is-extglob/-/is-extglob-2.1.1.tgz"; - sha1 = "a88c02535791f02ed37c76a1b9ea9773c833f8c2"; + sha1 = "qIwCU1eR8C7TfHahueqXc8gz+MI="; }; } { @@ -1862,7 +1862,7 @@ path = fetchurl { name = "is_fullwidth_code_point___is_fullwidth_code_point_1.0.0.tgz"; url = "https://registry.yarnpkg.com/is-fullwidth-code-point/-/is-fullwidth-code-point-1.0.0.tgz"; - sha1 = "ef9e31386f031a7f0d643af82fde50c457ef00cb"; + sha1 = "754xOG8DGn8NZDr4L95QxFfvAMs="; }; } { @@ -1870,7 +1870,7 @@ path = fetchurl { name = "is_fullwidth_code_point___is_fullwidth_code_point_2.0.0.tgz"; url = "https://registry.yarnpkg.com/is-fullwidth-code-point/-/is-fullwidth-code-point-2.0.0.tgz"; - sha1 = "a3b30a5c4f199183167aaab93beefae3ddfb654f"; + sha1 = "o7MKXE8ZkYMWeqq5O+764937ZU8="; }; } { @@ -1878,7 +1878,7 @@ path = fetchurl { name = "is_glob___is_glob_4.0.1.tgz"; url = "https://registry.yarnpkg.com/is-glob/-/is-glob-4.0.1.tgz"; - sha1 = "7567dbe9f2f5e2467bc77ab83c4a29482407a5dc"; + sha512 = "5G0tKtBTFImOqDnLB2hG6Bp2qcKEFduo4tZu9MT/H6NQv/ghhy30o55ufafxJ/LdH79LLs2Kfrn85TLKyA7BUg=="; }; } { @@ -1886,7 +1886,7 @@ path = fetchurl { name = "is_number___is_number_3.0.0.tgz"; url = "https://registry.yarnpkg.com/is-number/-/is-number-3.0.0.tgz"; - sha1 = "24fd6201a4782cf50561c810276afc7d12d71195"; + sha1 = "JP1iAaR4LPUFYcgQJ2r8fRLXEZU="; }; } { @@ -1894,7 +1894,7 @@ path = fetchurl { name = "is_obj___is_obj_1.0.1.tgz"; url = "https://registry.yarnpkg.com/is-obj/-/is-obj-1.0.1.tgz"; - sha1 = "3e4729ac1f5fde025cd7d83a896dab9f4f67db0f"; + sha1 = "PkcprB9f3gJc19g6iW2rn09n2w8="; }; } { @@ -1902,7 +1902,7 @@ path = fetchurl { name = "is_observable___is_observable_1.1.0.tgz"; url = "https://registry.yarnpkg.com/is-observable/-/is-observable-1.1.0.tgz"; - sha1 = "b3e986c8f44de950867cab5403f5a3465005975e"; + sha512 = "NqCa4Sa2d+u7BWc6CukaObG3Fh+CU9bvixbpcXYhy2VvYS7vVGIdAgnIS5Ks3A/cqk4rebLJ9s8zBstT2aKnIA=="; }; } { @@ -1910,7 +1910,7 @@ path = fetchurl { name = "is_path_cwd___is_path_cwd_1.0.0.tgz"; url = "https://registry.yarnpkg.com/is-path-cwd/-/is-path-cwd-1.0.0.tgz"; - sha1 = "d225ec23132e89edd38fda767472e62e65f1106d"; + sha1 = "0iXsIxMuie3Tj9p2dHLmLmXxEG0="; }; } { @@ -1918,7 +1918,7 @@ path = fetchurl { name = "is_path_in_cwd___is_path_in_cwd_1.0.1.tgz"; url = "https://registry.yarnpkg.com/is-path-in-cwd/-/is-path-in-cwd-1.0.1.tgz"; - sha1 = "5ac48b345ef675339bd6c7a48a912110b241cf52"; + sha512 = "FjV1RTW48E7CWM7eE/J2NJvAEEVektecDBVBE5Hh3nM1Jd0kvhHtX68Pr3xsDf857xt3Y4AkwVULK1Vku62aaQ=="; }; } { @@ -1926,7 +1926,7 @@ path = fetchurl { name = "is_path_inside___is_path_inside_1.0.1.tgz"; url = "https://registry.yarnpkg.com/is-path-inside/-/is-path-inside-1.0.1.tgz"; - sha1 = "8ef5b7de50437a3fdca6b4e865ef7aa55cb48036"; + sha1 = "jvW33lBDej/cprToZe96pVy0gDY="; }; } { @@ -1934,7 +1934,7 @@ path = fetchurl { name = "is_plain_object___is_plain_object_2.0.4.tgz"; url = "https://registry.yarnpkg.com/is-plain-object/-/is-plain-object-2.0.4.tgz"; - sha1 = "2c163b3fafb1b606d9d17928f05c2a1c38e07677"; + sha512 = "h5PpgXkWitc38BBMYawTYMWJHFZJVnBquFE57xFpjB8pJFiF6gZ+bU+WyI/yqXiFR5mdLsgYNaPe8uao6Uv9Og=="; }; } { @@ -1942,7 +1942,7 @@ path = fetchurl { name = "is_promise___is_promise_2.2.2.tgz"; url = "https://registry.yarnpkg.com/is-promise/-/is-promise-2.2.2.tgz"; - sha1 = "39ab959ccbf9a774cf079f7b40c7a26f763135f1"; + sha512 = "+lP4/6lKUBfQjZ2pdxThZvLUAafmZb8OAxFb8XXtiQmS35INgr85hdOGoEs124ez1FCnZJt6jau/T+alh58QFQ=="; }; } { @@ -1950,7 +1950,7 @@ path = fetchurl { name = "is_regex___is_regex_1.0.5.tgz"; url = "https://registry.yarnpkg.com/is-regex/-/is-regex-1.0.5.tgz"; - sha1 = "39d589a358bf18967f726967120b8fc1aed74eae"; + sha512 = "vlKW17SNq44owv5AQR3Cq0bQPEb8+kF3UKZ2fiZNOWtztYE5i0CzCZxFDwO58qAOWtxdBRVO/V5Qin1wjCqFYQ=="; }; } { @@ -1958,7 +1958,7 @@ path = fetchurl { name = "is_regexp___is_regexp_1.0.0.tgz"; url = "https://registry.yarnpkg.com/is-regexp/-/is-regexp-1.0.0.tgz"; - sha1 = "fd2d883545c46bac5a633e7b9a09e87fa2cb5069"; + sha1 = "/S2INUXEa6xaYz57mgnof6LLUGk="; }; } { @@ -1966,7 +1966,7 @@ path = fetchurl { name = "is_resolvable___is_resolvable_1.1.0.tgz"; url = "https://registry.yarnpkg.com/is-resolvable/-/is-resolvable-1.1.0.tgz"; - sha1 = "fb18f87ce1feb925169c9a407c19318a3206ed88"; + sha512 = "qgDYXFSR5WvEfuS5dMj6oTMEbrrSaM0CrFk2Yiq/gXnBvD9pMa2jGXxyhGLfvhZpuMZe18CJpFxAt3CRs42NMg=="; }; } { @@ -1974,7 +1974,7 @@ path = fetchurl { name = "is_stream___is_stream_1.1.0.tgz"; url = "https://registry.yarnpkg.com/is-stream/-/is-stream-1.1.0.tgz"; - sha1 = "12d4a3dd4e68e0b79ceb8dbc84173ae80d91ca44"; + sha1 = "EtSj3U5o4Lec6428hBc66A2RykQ="; }; } { @@ -1982,7 +1982,7 @@ path = fetchurl { name = "is_string___is_string_1.0.5.tgz"; url = "https://registry.yarnpkg.com/is-string/-/is-string-1.0.5.tgz"; - sha1 = "40493ed198ef3ff477b8c7f92f644ec82a5cd3a6"; + sha512 = "buY6VNRjhQMiF1qWDouloZlQbRhDPCebwxSjxMjxgemYT46YMd2NR0/H+fBhEfWX4A/w9TBJ+ol+okqJKFE6vQ=="; }; } { @@ -1990,7 +1990,7 @@ path = fetchurl { name = "is_symbol___is_symbol_1.0.3.tgz"; url = "https://registry.yarnpkg.com/is-symbol/-/is-symbol-1.0.3.tgz"; - sha1 = "38e1014b9e6329be0de9d24a414fd7441ec61937"; + sha512 = "OwijhaRSgqvhm/0ZdAcXNZt9lYdKFpcRDT5ULUuYXPoT794UNOdU+gpT6Rzo7b4V2HUl/op6GqY894AZwv9faQ=="; }; } { @@ -1998,7 +1998,7 @@ path = fetchurl { name = "is_windows___is_windows_1.0.2.tgz"; url = "https://registry.yarnpkg.com/is-windows/-/is-windows-1.0.2.tgz"; - sha1 = "d1850eb9791ecd18e6182ce12a30f396634bb19d"; + sha512 = "eXK1UInq2bPmjyX6e3VHIzMLobc4J94i4AWn+Hpq3OU5KkrRC96OAcR3PRJ/pGu6m8TRnBHP9dkXQVsT/COVIA=="; }; } { @@ -2006,7 +2006,7 @@ path = fetchurl { name = "isarray___isarray_1.0.0.tgz"; url = "https://registry.yarnpkg.com/isarray/-/isarray-1.0.0.tgz"; - sha1 = "bb935d48582cba168c06834957a54a3e07124f11"; + sha1 = "u5NdSFgsuhaMBoNJV6VKPgcSTxE="; }; } { @@ -2014,7 +2014,7 @@ path = fetchurl { name = "isexe___isexe_2.0.0.tgz"; url = "https://registry.yarnpkg.com/isexe/-/isexe-2.0.0.tgz"; - sha1 = "e8fbf374dc556ff8947a10dcb0572d633f2cfa10"; + sha1 = "6PvzdNxVb/iUehDcsFctYz8s+hA="; }; } { @@ -2022,7 +2022,7 @@ path = fetchurl { name = "isobject___isobject_2.1.0.tgz"; url = "https://registry.yarnpkg.com/isobject/-/isobject-2.1.0.tgz"; - sha1 = "f065561096a3f1da2ef46272f815c840d87e0c89"; + sha1 = "8GVWEJaj8dou9GJy+BXIQNh+DIk="; }; } { @@ -2030,7 +2030,7 @@ path = fetchurl { name = "isobject___isobject_3.0.1.tgz"; url = "https://registry.yarnpkg.com/isobject/-/isobject-3.0.1.tgz"; - sha1 = "4e431e92b11a9731636aa1f9c8d1ccbcfdab78df"; + sha1 = "TkMekrEalzFjaqH5yNHMvP2reN8="; }; } { @@ -2038,7 +2038,7 @@ path = fetchurl { name = "js_tokens___js_tokens_4.0.0.tgz"; url = "https://registry.yarnpkg.com/js-tokens/-/js-tokens-4.0.0.tgz"; - sha1 = "19203fb59991df98e3a287050d4647cdeaf32499"; + sha512 = "RdJUflcE3cUzKiMqQgsCu06FPu9UdIJO0beYbPhHN4k6apgJtifcoCtT9bcxOpYBtpD2kCM6Sbzg4CausW/PKQ=="; }; } { @@ -2046,7 +2046,7 @@ path = fetchurl { name = "js_tokens___js_tokens_3.0.2.tgz"; url = "https://registry.yarnpkg.com/js-tokens/-/js-tokens-3.0.2.tgz"; - sha1 = "9866df395102130e38f7f996bceb65443209c25b"; + sha1 = "mGbfOVECEw449/mWvOtlRDIJwls="; }; } { @@ -2054,7 +2054,7 @@ path = fetchurl { name = "js_yaml___js_yaml_3.13.1.tgz"; url = "https://registry.yarnpkg.com/js-yaml/-/js-yaml-3.13.1.tgz"; - sha1 = "aff151b30bfdfa8e49e05da22e7415e9dfa37847"; + sha512 = "YfbcO7jXDdyj0DGxYVSlSeQNHbD7XPWvrVWeVUujrQEoZzWJIRrCPoyk6kL6IAjAG2IolMK4T0hNUe0HOUs5Jw=="; }; } { @@ -2062,7 +2062,7 @@ path = fetchurl { name = "jsesc___jsesc_2.5.2.tgz"; url = "https://registry.yarnpkg.com/jsesc/-/jsesc-2.5.2.tgz"; - sha1 = "80564d2e483dacf6e8ef209650a67df3f0c283a4"; + sha512 = "OYu7XEzjkCQ3C5Ps3QIZsQfNpqoJyZZA99wd9aWd05NCtC5pWOkShK2mkL6HXQR6/Cy2lbNdPlZBpuQHXE63gA=="; }; } { @@ -2070,7 +2070,7 @@ path = fetchurl { name = "json_parse_better_errors___json_parse_better_errors_1.0.2.tgz"; url = "https://registry.yarnpkg.com/json-parse-better-errors/-/json-parse-better-errors-1.0.2.tgz"; - sha1 = "bb867cfb3450e69107c131d1c514bab3dc8bcaa9"; + sha512 = "mrqyZKfX5EhL7hvqcV6WG1yYjnjeuYDzDhhcAAUrq8Po85NBQBJP+ZDUT75qZQ98IkUoBqdkExkukOU7Ts2wrw=="; }; } { @@ -2078,7 +2078,7 @@ path = fetchurl { name = "json_schema_traverse___json_schema_traverse_0.3.1.tgz"; url = "https://registry.yarnpkg.com/json-schema-traverse/-/json-schema-traverse-0.3.1.tgz"; - sha1 = "349a6d44c53a51de89b40805c5d5e59b417d3340"; + sha1 = "NJptRMU6Ud6JtAgFxdXlm0F9M0A="; }; } { @@ -2086,7 +2086,7 @@ path = fetchurl { name = "json_schema_traverse___json_schema_traverse_0.4.1.tgz"; url = "https://registry.yarnpkg.com/json-schema-traverse/-/json-schema-traverse-0.4.1.tgz"; - sha1 = "69f6a87d9513ab8bb8fe63bdb0979c448e684660"; + sha512 = "xbbCH5dCYU5T8LcEhhuh7HJ88HXuW3qsI3Y0zOZFKfZEHcpWiHU/Jxzk629Brsab/mMiHQti9wMP+845RPe3Vg=="; }; } { @@ -2094,7 +2094,7 @@ path = fetchurl { name = "json_stable_stringify_without_jsonify___json_stable_stringify_without_jsonify_1.0.1.tgz"; url = "https://registry.yarnpkg.com/json-stable-stringify-without-jsonify/-/json-stable-stringify-without-jsonify-1.0.1.tgz"; - sha1 = "9db7b59496ad3f3cfef30a75142d2d930ad72651"; + sha1 = "nbe1lJatPzz+8wp1FC0tkwrXJlE="; }; } { @@ -2102,7 +2102,7 @@ path = fetchurl { name = "jsx_ast_utils___jsx_ast_utils_2.2.3.tgz"; url = "https://registry.yarnpkg.com/jsx-ast-utils/-/jsx-ast-utils-2.2.3.tgz"; - sha1 = "8a9364e402448a3ce7f14d357738310d9248054f"; + sha512 = "EdIHFMm+1BPynpKOpdPqiOsvnIrInRGJD7bzPZdPkjitQEqpdpUuFpq4T0npZFKTiB3RhWFdGN+oqOJIdhDhQA=="; }; } { @@ -2110,7 +2110,7 @@ path = fetchurl { name = "kind_of___kind_of_3.2.2.tgz"; url = "https://registry.yarnpkg.com/kind-of/-/kind-of-3.2.2.tgz"; - sha1 = "31ea21a734bab9bbb0f32466d893aea51e4a3c64"; + sha1 = "MeohpzS6ubuw8yRm2JOupR5KPGQ="; }; } { @@ -2118,7 +2118,7 @@ path = fetchurl { name = "kind_of___kind_of_4.0.0.tgz"; url = "https://registry.yarnpkg.com/kind-of/-/kind-of-4.0.0.tgz"; - sha1 = "20813df3d712928b207378691a45066fae72dd57"; + sha1 = "IIE989cSkosgc3hpGkUGb65y3Vc="; }; } { @@ -2126,7 +2126,7 @@ path = fetchurl { name = "kind_of___kind_of_5.1.0.tgz"; url = "https://registry.yarnpkg.com/kind-of/-/kind-of-5.1.0.tgz"; - sha1 = "729c91e2d857b7a419a1f9aa65685c4c33f5845d"; + sha512 = "NGEErnH6F2vUuXDh+OlbcKW7/wOcfdRHaZ7VWtqCztfHri/++YKmP51OdWeGPuqCOba6kk2OTe5d02VmTB80Pw=="; }; } { @@ -2134,7 +2134,7 @@ path = fetchurl { name = "kind_of___kind_of_6.0.3.tgz"; url = "https://registry.yarnpkg.com/kind-of/-/kind-of-6.0.3.tgz"; - sha1 = "07c05034a6c349fa06e24fa35aa76db4580ce4dd"; + sha512 = "dcS1ul+9tmeD95T+x28/ehLgd9mENa3LsvDTtzm3vyBEO7RPptvAD+t44WVXaUjTBRcrpFeFlC8WCruUR456hw=="; }; } { @@ -2142,7 +2142,7 @@ path = fetchurl { name = "lcid___lcid_1.0.0.tgz"; url = "https://registry.yarnpkg.com/lcid/-/lcid-1.0.0.tgz"; - sha1 = "308accafa0bc483a3867b4b6f2b9506251d1b835"; + sha1 = "MIrMr6C8SDo4Z7S28rlQYlHRuDU="; }; } { @@ -2150,7 +2150,7 @@ path = fetchurl { name = "levn___levn_0.3.0.tgz"; url = "https://registry.yarnpkg.com/levn/-/levn-0.3.0.tgz"; - sha1 = "3b09924edf9f083c0490fdd4c0bc4421e04764ee"; + sha1 = "OwmSTt+fCDwEkP3UwLxEIeBHZO4="; }; } { @@ -2158,7 +2158,7 @@ path = fetchurl { name = "lint_staged___lint_staged_8.2.1.tgz"; url = "https://registry.yarnpkg.com/lint-staged/-/lint-staged-8.2.1.tgz"; - sha1 = "752fcf222d9d28f323a3b80f1e668f3654ff221f"; + sha512 = "n0tDGR/rTCgQNwXnUf/eWIpPNddGWxC32ANTNYsj2k02iZb7Cz5ox2tytwBu+2r0zDXMEMKw7Y9OD/qsav561A=="; }; } { @@ -2166,7 +2166,7 @@ path = fetchurl { name = "listr_silent_renderer___listr_silent_renderer_1.1.1.tgz"; url = "https://registry.yarnpkg.com/listr-silent-renderer/-/listr-silent-renderer-1.1.1.tgz"; - sha1 = "924b5a3757153770bf1a8e3fbf74b8bbf3f9242e"; + sha1 = "kktaN1cVN3C/Go4/v3S4u/P5JC4="; }; } { @@ -2174,7 +2174,7 @@ path = fetchurl { name = "listr_update_renderer___listr_update_renderer_0.5.0.tgz"; url = "https://registry.yarnpkg.com/listr-update-renderer/-/listr-update-renderer-0.5.0.tgz"; - sha1 = "4ea8368548a7b8aecb7e06d8c95cb45ae2ede6a2"; + sha512 = "tKRsZpKz8GSGqoI/+caPmfrypiaq+OQCbd+CovEC24uk1h952lVj5sC7SqyFUm+OaJ5HN/a1YLt5cit2FMNsFA=="; }; } { @@ -2182,7 +2182,7 @@ path = fetchurl { name = "listr_verbose_renderer___listr_verbose_renderer_0.5.0.tgz"; url = "https://registry.yarnpkg.com/listr-verbose-renderer/-/listr-verbose-renderer-0.5.0.tgz"; - sha1 = "f1132167535ea4c1261102b9f28dac7cba1e03db"; + sha512 = "04PDPqSlsqIOaaaGZ+41vq5FejI9auqTInicFRndCBgE3bXG8D6W1I+mWhk+1nqbHmyhla/6BUrd5OSiHwKRXw=="; }; } { @@ -2190,7 +2190,7 @@ path = fetchurl { name = "listr___listr_0.14.3.tgz"; url = "https://registry.yarnpkg.com/listr/-/listr-0.14.3.tgz"; - sha1 = "2fea909604e434be464c50bddba0d496928fa586"; + sha512 = "RmAl7su35BFd/xoMamRjpIE4j3v+L28o8CT5YhAXQJm1fD+1l9ngXY8JAQRJ+tFK2i5njvi0iRUKV09vPwA0iA=="; }; } { @@ -2198,7 +2198,7 @@ path = fetchurl { name = "load_json_file___load_json_file_2.0.0.tgz"; url = "https://registry.yarnpkg.com/load-json-file/-/load-json-file-2.0.0.tgz"; - sha1 = "7947e42149af80d696cbf797bcaabcfe1fe29ca8"; + sha1 = "eUfkIUmvgNaWy/eXvKq8/h/inKg="; }; } { @@ -2206,7 +2206,7 @@ path = fetchurl { name = "locate_path___locate_path_2.0.0.tgz"; url = "https://registry.yarnpkg.com/locate-path/-/locate-path-2.0.0.tgz"; - sha1 = "2b568b265eec944c6d9c0de9c3dbbbca0354cd8e"; + sha1 = "K1aLJl7slExtnA3pw9u7ygNUzY4="; }; } { @@ -2214,7 +2214,7 @@ path = fetchurl { name = "locate_path___locate_path_3.0.0.tgz"; url = "https://registry.yarnpkg.com/locate-path/-/locate-path-3.0.0.tgz"; - sha1 = "dbec3b3ab759758071b58fe59fc41871af21400e"; + sha512 = "7AO748wWnIhNqAuaty2ZWHkQHRSNfPVIsPIfwEOWO22AmaoVrWavlOcMR5nzTLNYvp36X220/maaRsrec1G65A=="; }; } { @@ -2222,7 +2222,7 @@ path = fetchurl { name = "lodash.memoize___lodash.memoize_4.1.2.tgz"; url = "https://registry.yarnpkg.com/lodash.memoize/-/lodash.memoize-4.1.2.tgz"; - sha1 = "bcc6c49a42a2840ed997f323eada5ecd182e0bfe"; + sha1 = "vMbEmkKihA7Zl/Mj6tpezRguC/4="; }; } { @@ -2230,7 +2230,7 @@ path = fetchurl { name = "lodash.merge___lodash.merge_4.6.2.tgz"; url = "https://registry.yarnpkg.com/lodash.merge/-/lodash.merge-4.6.2.tgz"; - sha1 = "558aa53b43b661e1925a0afdfa36a9a1085fe57a"; + sha512 = "0KpjqXRVvrYyCsX1swR/XTK0va6VQkQM6MNo7PqW77ByjAhoARA8EfrP1N4+KlKj8YS0ZUCtRT/YUuhyYDujIQ=="; }; } { @@ -2238,7 +2238,7 @@ path = fetchurl { name = "lodash.unescape___lodash.unescape_4.0.1.tgz"; url = "https://registry.yarnpkg.com/lodash.unescape/-/lodash.unescape-4.0.1.tgz"; - sha1 = "bf2249886ce514cda112fae9218cdc065211fc9c"; + sha1 = "vyJJiGzlFM2hEvrpIYzcBlIR/Jw="; }; } { @@ -2246,7 +2246,7 @@ path = fetchurl { name = "lodash___lodash_4.17.15.tgz"; url = "https://registry.yarnpkg.com/lodash/-/lodash-4.17.15.tgz"; - sha1 = "b447f6670a0455bbfeedd11392eff330ea097548"; + sha512 = "8xOcRHvCjnocdS5cpwXQXVzmmh5e5+saE2QGoeQmbKmRS6J3VQppPOIt0MnmE+4xlZoumy0GPG0D0MVIQbNA1A=="; }; } { @@ -2254,7 +2254,7 @@ path = fetchurl { name = "log_symbols___log_symbols_1.0.2.tgz"; url = "https://registry.yarnpkg.com/log-symbols/-/log-symbols-1.0.2.tgz"; - sha1 = "376ff7b58ea3086a0f09facc74617eca501e1a18"; + sha1 = "N2/3tY6jCGoPCfrMdGF+ylAeGhg="; }; } { @@ -2262,7 +2262,7 @@ path = fetchurl { name = "log_symbols___log_symbols_2.2.0.tgz"; url = "https://registry.yarnpkg.com/log-symbols/-/log-symbols-2.2.0.tgz"; - sha1 = "5740e1c5d6f0dfda4ad9323b5332107ef6b4c40a"; + sha512 = "VeIAFslyIerEJLXHziedo2basKbMKtTw3vfn5IzG0XTjhAVEJyNHnL2p7vc+wBDSdQuUpNw3M2u6xb9QsAY5Eg=="; }; } { @@ -2270,7 +2270,7 @@ path = fetchurl { name = "log_update___log_update_2.3.0.tgz"; url = "https://registry.yarnpkg.com/log-update/-/log-update-2.3.0.tgz"; - sha1 = "88328fd7d1ce7938b29283746f0b1bc126b24708"; + sha1 = "iDKP19HOeTiykoN0bwsbwSayRwg="; }; } { @@ -2278,7 +2278,7 @@ path = fetchurl { name = "loglevel_colored_level_prefix___loglevel_colored_level_prefix_1.0.0.tgz"; url = "https://registry.yarnpkg.com/loglevel-colored-level-prefix/-/loglevel-colored-level-prefix-1.0.0.tgz"; - sha1 = "6a40218fdc7ae15fc76c3d0f3e676c465388603e"; + sha1 = "akAhj9x64V/HbD0PPmdsRlOIYD4="; }; } { @@ -2286,7 +2286,7 @@ path = fetchurl { name = "loglevel___loglevel_1.6.8.tgz"; url = "https://registry.yarnpkg.com/loglevel/-/loglevel-1.6.8.tgz"; - sha1 = "8a25fb75d092230ecd4457270d80b54e28011171"; + sha512 = "bsU7+gc9AJ2SqpzxwU3+1fedl8zAntbtC5XYlt3s2j1hJcn2PsXSmgN8TaLG/J1/2mod4+cE/3vNL70/c1RNCA=="; }; } { @@ -2294,7 +2294,7 @@ path = fetchurl { name = "loose_envify___loose_envify_1.4.0.tgz"; url = "https://registry.yarnpkg.com/loose-envify/-/loose-envify-1.4.0.tgz"; - sha1 = "71ee51fa7be4caec1a63839f7e682d8132d30caf"; + sha512 = "lyuxPGr/Wfhrlem2CL/UcnUc1zcqKAImBDzukY7Y5F/yQiNdko6+fRLevlw1HgMySw7f611UIY408EtxRSoK3Q=="; }; } { @@ -2302,7 +2302,7 @@ path = fetchurl { name = "lru_cache___lru_cache_4.1.5.tgz"; url = "https://registry.yarnpkg.com/lru-cache/-/lru-cache-4.1.5.tgz"; - sha1 = "8bbe50ea85bed59bc9e33dcab8235ee9bcf443cd"; + sha512 = "sWZlbEP2OsHNkXrMl5GYk/jKk70MBng6UU4YI/qGDYbgf6YbP4EvmqISbXCoJiRKs+1bSpFHVgQxvJ17F2li5g=="; }; } { @@ -2310,7 +2310,7 @@ path = fetchurl { name = "make_plural___make_plural_4.3.0.tgz"; url = "https://registry.yarnpkg.com/make-plural/-/make-plural-4.3.0.tgz"; - sha1 = "f23de08efdb0cac2e0c9ba9f315b0dff6b4c2735"; + sha512 = "xTYd4JVHpSCW+aqDof6w/MebaMVNTVYBZhbB/vi513xXdiPT92JMVCo0Jq8W2UZnzYRFeVbQiQ+I25l13JuKvA=="; }; } { @@ -2318,7 +2318,7 @@ path = fetchurl { name = "map_cache___map_cache_0.2.2.tgz"; url = "https://registry.yarnpkg.com/map-cache/-/map-cache-0.2.2.tgz"; - sha1 = "c32abd0bd6525d9b051645bb4f26ac5dc98a0dbf"; + sha1 = "wyq9C9ZSXZsFFkW7TyasXcmKDb8="; }; } { @@ -2326,7 +2326,7 @@ path = fetchurl { name = "map_obj___map_obj_2.0.0.tgz"; url = "https://registry.yarnpkg.com/map-obj/-/map-obj-2.0.0.tgz"; - sha1 = "a65cd29087a92598b8791257a523e021222ac1f9"; + sha1 = "plzSkIepJZi4eRJXpSPgISIqwfk="; }; } { @@ -2334,7 +2334,7 @@ path = fetchurl { name = "map_visit___map_visit_1.0.0.tgz"; url = "https://registry.yarnpkg.com/map-visit/-/map-visit-1.0.0.tgz"; - sha1 = "ecdca8f13144e660f1b5bd41f12f3479d98dfb8f"; + sha1 = "7Nyo8TFE5mDxtb1B8S80edmN+48="; }; } { @@ -2342,7 +2342,7 @@ path = fetchurl { name = "matcher___matcher_1.1.1.tgz"; url = "https://registry.yarnpkg.com/matcher/-/matcher-1.1.1.tgz"; - sha1 = "51d8301e138f840982b338b116bb0c09af62c1c2"; + sha512 = "+BmqxWIubKTRKNWx/ahnCkk3mG8m7OturVlqq6HiojGJTd5hVYbgZm6WzcYPCoB+KBT4Vd6R7WSRG2OADNaCjg=="; }; } { @@ -2350,7 +2350,7 @@ path = fetchurl { name = "mem___mem_1.1.0.tgz"; url = "https://registry.yarnpkg.com/mem/-/mem-1.1.0.tgz"; - sha1 = "5edd52b485ca1d900fe64895505399a0dfa45f76"; + sha1 = "Xt1StIXKHZAP5kiVUFOZoN+kX3Y="; }; } { @@ -2358,7 +2358,7 @@ path = fetchurl { name = "messageformat_parser___messageformat_parser_1.1.0.tgz"; url = "https://registry.yarnpkg.com/messageformat-parser/-/messageformat-parser-1.1.0.tgz"; - sha1 = "13ba2250a76bbde8e0fca0dbb3475f95c594a90a"; + sha512 = "Hwem6G3MsKDLS1FtBRGIs8T50P1Q00r3srS6QJePCFbad9fq0nYxwf3rnU2BreApRGhmpKMV7oZI06Sy1c9TPA=="; }; } { @@ -2366,7 +2366,7 @@ path = fetchurl { name = "messageformat___messageformat_1.1.1.tgz"; url = "https://registry.yarnpkg.com/messageformat/-/messageformat-1.1.1.tgz"; - sha1 = "ceaa2e6c86929d4807058275a7372b1bd963bdf6"; + sha512 = "Q0uXcDtF5pEZsVSyhzDOGgZZK6ykN79VY9CwU3Nv0gsqx62BjdJW0MT+63UkHQ4exe3HE33ZlxR2/YwoJarRTg=="; }; } { @@ -2374,7 +2374,7 @@ path = fetchurl { name = "micromatch___micromatch_3.1.10.tgz"; url = "https://registry.yarnpkg.com/micromatch/-/micromatch-3.1.10.tgz"; - sha1 = "70859bc95c9840952f359a068a3fc49f9ecfac23"; + sha512 = "MWikgl9n9M3w+bpsY3He8L+w9eF9338xRl8IAO5viDizwSzziFEyUzo2xrrloB64ADbTf8uA8vRqqttDTOmccg=="; }; } { @@ -2382,7 +2382,7 @@ path = fetchurl { name = "mimic_fn___mimic_fn_1.2.0.tgz"; url = "https://registry.yarnpkg.com/mimic-fn/-/mimic-fn-1.2.0.tgz"; - sha1 = "820c86a39334640e99516928bd03fca88057d022"; + sha512 = "jf84uxzwiuiIVKiOLpfYk7N46TSy8ubTonmneY9vrpHNAnp0QBt2BxWV9dO3/j+BoVAb+a5G6YDPW3M5HOdMWQ=="; }; } { @@ -2390,7 +2390,7 @@ path = fetchurl { name = "minimatch___minimatch_3.0.4.tgz"; url = "https://registry.yarnpkg.com/minimatch/-/minimatch-3.0.4.tgz"; - sha1 = "5166e286457f03306064be5497e8dbb0c3d32083"; + sha512 = "yJHVQEhyqPLUTgt9B83PXu6W3rx4MvvHvSUvToogpwoGDOUQ+yDrR0HRot+yOCdCO7u4hX3pWft6kWBBcqh0UA=="; }; } { @@ -2398,7 +2398,15 @@ path = fetchurl { name = "minimist___minimist_1.2.5.tgz"; url = "https://registry.yarnpkg.com/minimist/-/minimist-1.2.5.tgz"; - sha1 = "67d66014b66a6a8aaa0c083c5fd58df4e4e97602"; + sha512 = "FM9nNUYrRBAELZQT3xeZQ7fmMOBg6nWNmJKTcgsJeaLstP/UODVpGsr5OhXhhXg6f+qtJ8uiZ+PUxkDWcgIXLw=="; + }; + } + { + name = "minipass___minipass_3.3.4.tgz"; + path = fetchurl { + name = "minipass___minipass_3.3.4.tgz"; + url = "https://registry.yarnpkg.com/minipass/-/minipass-3.3.4.tgz"; + sha512 = "I9WPbWHCGu8W+6k1ZiGpPu0GkoKBeorkfKNuAFBNS1HNFJvke82sxvI5bzcCNpWPorkOO5QQ+zomzzwRxejXiw=="; }; } { @@ -2406,7 +2414,7 @@ path = fetchurl { name = "mixin_deep___mixin_deep_1.3.2.tgz"; url = "https://registry.yarnpkg.com/mixin-deep/-/mixin-deep-1.3.2.tgz"; - sha1 = "1120b43dc359a785dce65b55b82e257ccf479566"; + sha512 = "WRoDn//mXBiJ1H40rqa3vH0toePwSsGb45iInWlTySa+Uu4k3tYUSxa2v1KqAiLtvlrSzaExqS1gtk96A9zvEA=="; }; } { @@ -2414,7 +2422,7 @@ path = fetchurl { name = "mkdirp___mkdirp_0.5.5.tgz"; url = "https://registry.yarnpkg.com/mkdirp/-/mkdirp-0.5.5.tgz"; - sha1 = "d91cefd62d1436ca0f41620e251288d420099def"; + sha512 = "NKmAlESf6jMGym1++R0Ra7wvhV+wFW63FaSOFPwRahvea0gMUcGUhVeAg/0BC0wiv9ih5NYPB1Wn1UEI1/L+xQ=="; }; } { @@ -2422,7 +2430,7 @@ path = fetchurl { name = "ms___ms_2.0.0.tgz"; url = "https://registry.yarnpkg.com/ms/-/ms-2.0.0.tgz"; - sha1 = "5608aeadfc00be6c2901df5f9861788de0d597c8"; + sha1 = "VgiurfwAvmwpAd9fmGF4jeDVl8g="; }; } { @@ -2430,7 +2438,7 @@ path = fetchurl { name = "ms___ms_2.1.2.tgz"; url = "https://registry.yarnpkg.com/ms/-/ms-2.1.2.tgz"; - sha1 = "d09d1f357b443f493382a8eb3ccd183872ae6009"; + sha512 = "sGkPx+VjMtmA6MX27oA4FBFELFCZZ4S4XqeGOXCv68tT+jb3vk/RyaKWP0PTKyWtmLSM0b+adUTEvbs1PEaH2w=="; }; } { @@ -2438,7 +2446,7 @@ path = fetchurl { name = "mute_stream___mute_stream_0.0.7.tgz"; url = "https://registry.yarnpkg.com/mute-stream/-/mute-stream-0.0.7.tgz"; - sha1 = "3075ce93bc21b8fab43e1bc4da7e8115ed1e7bab"; + sha1 = "MHXOk7whuPq0PhvE2n6BFe0ee6s="; }; } { @@ -2446,7 +2454,7 @@ path = fetchurl { name = "nanomatch___nanomatch_1.2.13.tgz"; url = "https://registry.yarnpkg.com/nanomatch/-/nanomatch-1.2.13.tgz"; - sha1 = "b87a8aa4fc0de8fe6be88895b38983ff265bd119"; + sha512 = "fpoe2T0RbHwBTBUOftAfBPaDEi06ufaUai0mE6Yn1kacc3SnTErfb/h+X94VXzI64rKFHYImXSvdwGGCmwOqCA=="; }; } { @@ -2454,7 +2462,7 @@ path = fetchurl { name = "natural_compare___natural_compare_1.4.0.tgz"; url = "https://registry.yarnpkg.com/natural-compare/-/natural-compare-1.4.0.tgz"; - sha1 = "4abebfeed7541f2c27acfb29bdbbd15c8d5ba4f7"; + sha1 = "Sr6/7tdUHywnrPspvbvRXI1bpPc="; }; } { @@ -2462,7 +2470,7 @@ path = fetchurl { name = "nice_try___nice_try_1.0.5.tgz"; url = "https://registry.yarnpkg.com/nice-try/-/nice-try-1.0.5.tgz"; - sha1 = "a3378a7696ce7d223e88fc9b764bd7ef1089e366"; + sha512 = "1nh45deeb5olNY7eX82BkPO7SSxR5SSYJiPTrTdFUVYwAl8CKMA5N9PjTYkHiRjisVcxcQ1HXdLhx2qxxJzLNQ=="; }; } { @@ -2470,7 +2478,7 @@ path = fetchurl { name = "nopt___nopt_3.0.6.tgz"; url = "https://registry.yarnpkg.com/nopt/-/nopt-3.0.6.tgz"; - sha1 = "c6465dbf08abcd4db359317f79ac68a646b28ff9"; + sha1 = "xkZdvwirzU2zWTF/eaxopkayj/k="; }; } { @@ -2478,7 +2486,7 @@ path = fetchurl { name = "normalize_package_data___normalize_package_data_2.5.0.tgz"; url = "https://registry.yarnpkg.com/normalize-package-data/-/normalize-package-data-2.5.0.tgz"; - sha1 = "e66db1838b200c1dfc233225d12cb36520e234a8"; + sha512 = "/5CMN3T0R4XTj4DcGaexo+roZSdSFW/0AOOTROrjxzCG1wrWXEsGbRKevjlIL+ZDE4sZlJr5ED4YW0yqmkK+eA=="; }; } { @@ -2486,7 +2494,7 @@ path = fetchurl { name = "npm_path___npm_path_2.0.4.tgz"; url = "https://registry.yarnpkg.com/npm-path/-/npm-path-2.0.4.tgz"; - sha1 = "c641347a5ff9d6a09e4d9bce5580c4f505278e64"; + sha512 = "IFsj0R9C7ZdR5cP+ET342q77uSRdtWOlWpih5eC+lu29tIDbNEgDbzgVJ5UFvYHWhxDZ5TFkJafFioO0pPQjCw=="; }; } { @@ -2494,7 +2502,7 @@ path = fetchurl { name = "npm_run_path___npm_run_path_2.0.2.tgz"; url = "https://registry.yarnpkg.com/npm-run-path/-/npm-run-path-2.0.2.tgz"; - sha1 = "35a9232dfa35d7067b4cb2ddf2357b1871536c5f"; + sha1 = "NakjLfo11wZ7TLLd8jV7GHFTbF8="; }; } { @@ -2502,7 +2510,7 @@ path = fetchurl { name = "npm_which___npm_which_3.0.1.tgz"; url = "https://registry.yarnpkg.com/npm-which/-/npm-which-3.0.1.tgz"; - sha1 = "9225f26ec3a285c209cae67c3b11a6b4ab7140aa"; + sha1 = "kiXybsOihcIJyuZ8OxGmtKtxQKo="; }; } { @@ -2510,7 +2518,7 @@ path = fetchurl { name = "number_is_nan___number_is_nan_1.0.1.tgz"; url = "https://registry.yarnpkg.com/number-is-nan/-/number-is-nan-1.0.1.tgz"; - sha1 = "097b602b53422a522c1afb8790318336941a011d"; + sha1 = "CXtgK1NCKlIsGvuHkDGDNpQaAR0="; }; } { @@ -2518,7 +2526,7 @@ path = fetchurl { name = "object_assign___object_assign_4.1.1.tgz"; url = "https://registry.yarnpkg.com/object-assign/-/object-assign-4.1.1.tgz"; - sha1 = "2109adc7965887cfc05cbbd442cac8bfbb360863"; + sha1 = "IQmtx5ZYh8/AXLvUQsrIv7s2CGM="; }; } { @@ -2526,7 +2534,7 @@ path = fetchurl { name = "object_copy___object_copy_0.1.0.tgz"; url = "https://registry.yarnpkg.com/object-copy/-/object-copy-0.1.0.tgz"; - sha1 = "7e7d858b781bd7c991a41ba975ed3812754e998c"; + sha1 = "fn2Fi3gb18mRpBupde04EnVOmYw="; }; } { @@ -2534,7 +2542,7 @@ path = fetchurl { name = "object_inspect___object_inspect_1.7.0.tgz"; url = "https://registry.yarnpkg.com/object-inspect/-/object-inspect-1.7.0.tgz"; - sha1 = "f4f6bd181ad77f006b5ece60bd0b6f398ff74a67"; + sha512 = "a7pEHdh1xKIAgTySUGgLMx/xwDZskN1Ud6egYYN3EdRW4ZMPNEDUTF+hwy2LUC+Bl+SyLXANnwz/jyh/qutKUw=="; }; } { @@ -2542,7 +2550,7 @@ path = fetchurl { name = "object_is___object_is_1.1.2.tgz"; url = "https://registry.yarnpkg.com/object-is/-/object-is-1.1.2.tgz"; - sha1 = "c5d2e87ff9e119f78b7a088441519e2eec1573b6"; + sha512 = "5lHCz+0uufF6wZ7CRFWJN3hp8Jqblpgve06U5CMQ3f//6iDjPr2PEo9MWCjEssDsa+UZEL4PkFpr+BMop6aKzQ=="; }; } { @@ -2550,7 +2558,7 @@ path = fetchurl { name = "object_keys___object_keys_1.1.1.tgz"; url = "https://registry.yarnpkg.com/object-keys/-/object-keys-1.1.1.tgz"; - sha1 = "1c47f272df277f3b1daf061677d9c82e2322c60e"; + sha512 = "NuAESUOUMrlIXOfHKzD6bpPu3tYt3xvjNdRIQ+FeT0lNb4K8WR70CaDxhuNguS2XG+GjkyMwOzsN5ZktImfhLA=="; }; } { @@ -2558,7 +2566,7 @@ path = fetchurl { name = "object_visit___object_visit_1.0.1.tgz"; url = "https://registry.yarnpkg.com/object-visit/-/object-visit-1.0.1.tgz"; - sha1 = "f79c4493af0c5377b59fe39d395e41042dd045bb"; + sha1 = "95xEk68MU3e1n+OdOV5BBC3QRbs="; }; } { @@ -2566,7 +2574,7 @@ path = fetchurl { name = "object.assign___object.assign_4.1.0.tgz"; url = "https://registry.yarnpkg.com/object.assign/-/object.assign-4.1.0.tgz"; - sha1 = "968bf1100d7956bb3ca086f006f846b3bc4008da"; + sha512 = "exHJeq6kBKj58mqGyTQ9DFvrZC/eR6OwxzoM9YRoGBqrXYonaFyGiFMuc9VZrXf7DarreEwMpurG3dd+CNyW5w=="; }; } { @@ -2574,7 +2582,7 @@ path = fetchurl { name = "object.entries___object.entries_1.1.1.tgz"; url = "https://registry.yarnpkg.com/object.entries/-/object.entries-1.1.1.tgz"; - sha1 = "ee1cf04153de02bb093fec33683900f57ce5399b"; + sha512 = "ilqR7BgdyZetJutmDPfXCDffGa0/Yzl2ivVNpbx/g4UeWrCdRnFDUBrKJGLhGieRHDATnyZXWBeCb29k9CJysQ=="; }; } { @@ -2582,7 +2590,7 @@ path = fetchurl { name = "object.fromentries___object.fromentries_2.0.2.tgz"; url = "https://registry.yarnpkg.com/object.fromentries/-/object.fromentries-2.0.2.tgz"; - sha1 = "4a09c9b9bb3843dd0f89acdb517a794d4f355ac9"; + sha512 = "r3ZiBH7MQppDJVLx6fhD618GKNG40CZYH9wgwdhKxBDDbQgjeWGGd4AtkZad84d291YxvWe7bJGuE65Anh0dxQ=="; }; } { @@ -2590,7 +2598,7 @@ path = fetchurl { name = "object.pick___object.pick_1.3.0.tgz"; url = "https://registry.yarnpkg.com/object.pick/-/object.pick-1.3.0.tgz"; - sha1 = "87a10ac4c1694bd2e1cbf53591a66141fb5dd747"; + sha1 = "h6EKxMFpS9Lhy/U1kaZhQftd10c="; }; } { @@ -2598,7 +2606,7 @@ path = fetchurl { name = "object.values___object.values_1.1.1.tgz"; url = "https://registry.yarnpkg.com/object.values/-/object.values-1.1.1.tgz"; - sha1 = "68a99ecde356b7e9295a3c5e0ce31dc8c953de5e"; + sha512 = "WTa54g2K8iu0kmS/us18jEmdv1a4Wi//BZ/DTVYEcH0XhLM5NYdpDHja3gt57VrZLcNAO2WGA+KpWsDBaHt6eA=="; }; } { @@ -2606,7 +2614,7 @@ path = fetchurl { name = "once___once_1.4.0.tgz"; url = "https://registry.yarnpkg.com/once/-/once-1.4.0.tgz"; - sha1 = "583b1aa775961d4b113ac17d9c50baef9dd76bd1"; + sha1 = "WDsap3WWHUsROsF9nFC6753Xa9E="; }; } { @@ -2614,7 +2622,7 @@ path = fetchurl { name = "onetime___onetime_2.0.1.tgz"; url = "https://registry.yarnpkg.com/onetime/-/onetime-2.0.1.tgz"; - sha1 = "067428230fd67443b2794b22bba528b6867962d4"; + sha1 = "BnQoIw/WdEOyeUsiu6UotoZ5YtQ="; }; } { @@ -2622,7 +2630,7 @@ path = fetchurl { name = "optionator___optionator_0.8.3.tgz"; url = "https://registry.yarnpkg.com/optionator/-/optionator-0.8.3.tgz"; - sha1 = "84fa1d036fe9d3c7e21d99884b601167ec8fb495"; + sha512 = "+IW9pACdk3XWmmTXG8m3upGUJst5XRGzxMRjXzAuJ1XnIFNvfhjjIuYkDvysnPQ7qzqVzLt78BCruntqRhWQbA=="; }; } { @@ -2630,7 +2638,7 @@ path = fetchurl { name = "os_locale___os_locale_2.1.0.tgz"; url = "https://registry.yarnpkg.com/os-locale/-/os-locale-2.1.0.tgz"; - sha1 = "42bc2900a6b5b8bd17376c8e882b65afccf24bf2"; + sha512 = "3sslG3zJbEYcaC4YVAvDorjGxc7tv6KVATnLPZONiljsUncvihe9BQoVCEs0RZ1kmf4Hk9OBqlZfJZWI4GanKA=="; }; } { @@ -2638,7 +2646,7 @@ path = fetchurl { name = "os_tmpdir___os_tmpdir_1.0.2.tgz"; url = "https://registry.yarnpkg.com/os-tmpdir/-/os-tmpdir-1.0.2.tgz"; - sha1 = "bbe67406c79aa85c5cfec766fe5734555dfa1274"; + sha1 = "u+Z0BseaqFxc/sdm/lc0VV36EnQ="; }; } { @@ -2646,7 +2654,7 @@ path = fetchurl { name = "p_finally___p_finally_1.0.0.tgz"; url = "https://registry.yarnpkg.com/p-finally/-/p-finally-1.0.0.tgz"; - sha1 = "3fbcfb15b899a44123b34b6dcc18b724336a2cae"; + sha1 = "P7z7FbiZpEEjs0ttzBi3JDNqLK4="; }; } { @@ -2654,7 +2662,7 @@ path = fetchurl { name = "p_limit___p_limit_1.3.0.tgz"; url = "https://registry.yarnpkg.com/p-limit/-/p-limit-1.3.0.tgz"; - sha1 = "b86bd5f0c25690911c7590fcbfc2010d54b3ccb8"; + sha512 = "vvcXsLAJ9Dr5rQOPk7toZQZJApBl2K4J6dANSsEuh6QI41JYcsS/qhTGa9ErIUUgK3WNQoJYvylxvjqmiqEA9Q=="; }; } { @@ -2662,7 +2670,7 @@ path = fetchurl { name = "p_limit___p_limit_2.3.0.tgz"; url = "https://registry.yarnpkg.com/p-limit/-/p-limit-2.3.0.tgz"; - sha1 = "3dd33c647a214fdfffd835933eb086da0dc21db1"; + sha512 = "//88mFWSJx8lxCzwdAABTJL2MyWB12+eIY7MDL2SqLmAkeKU9qxRvWuSyTjm3FUmpBEMuFfckAIqEaVGUDxb6w=="; }; } { @@ -2670,7 +2678,7 @@ path = fetchurl { name = "p_locate___p_locate_2.0.0.tgz"; url = "https://registry.yarnpkg.com/p-locate/-/p-locate-2.0.0.tgz"; - sha1 = "20a0103b222a70c8fd39cc2e580680f3dde5ec43"; + sha1 = "IKAQOyIqcMj9OcwuWAaA893l7EM="; }; } { @@ -2678,7 +2686,7 @@ path = fetchurl { name = "p_locate___p_locate_3.0.0.tgz"; url = "https://registry.yarnpkg.com/p-locate/-/p-locate-3.0.0.tgz"; - sha1 = "322d69a05c0264b25997d9f40cd8a891ab0064a4"; + sha512 = "x+12w/To+4GFfgJhBEpiDcLozRJGegY+Ei7/z0tSLkMmxGZNybVMSfWj9aJn8Z5Fc7dBUNJOOVgPv2H7IwulSQ=="; }; } { @@ -2686,7 +2694,7 @@ path = fetchurl { name = "p_map___p_map_1.2.0.tgz"; url = "https://registry.yarnpkg.com/p-map/-/p-map-1.2.0.tgz"; - sha1 = "e4e94f311eabbc8633a1e79908165fca26241b6b"; + sha512 = "r6zKACMNhjPJMTl8KcFH4li//gkrXWfbD6feV8l6doRHlzljFWGJ2AP6iKaCJXyZmAUMOPtvbW7EXkbWO/pLEA=="; }; } { @@ -2694,7 +2702,7 @@ path = fetchurl { name = "p_map___p_map_2.1.0.tgz"; url = "https://registry.yarnpkg.com/p-map/-/p-map-2.1.0.tgz"; - sha1 = "310928feef9c9ecc65b68b17693018a665cea175"; + sha512 = "y3b8Kpd8OAN444hxfBbFfj1FY/RjtTd8tzYwhUqNYXx0fXx2iX4maP4Qr6qhIKbQXI02wTLAda4fYUbDagTUFw=="; }; } { @@ -2702,7 +2710,7 @@ path = fetchurl { name = "p_try___p_try_1.0.0.tgz"; url = "https://registry.yarnpkg.com/p-try/-/p-try-1.0.0.tgz"; - sha1 = "cbc79cdbaf8fd4228e13f621f2b1a237c1b207b3"; + sha1 = "y8ec26+P1CKOE/Yh8rGiN8GyB7M="; }; } { @@ -2710,7 +2718,7 @@ path = fetchurl { name = "p_try___p_try_2.2.0.tgz"; url = "https://registry.yarnpkg.com/p-try/-/p-try-2.2.0.tgz"; - sha1 = "cb2868540e313d61de58fafbe35ce9004d5540e6"; + sha512 = "R4nPAVTAU0B9D35/Gk3uJf/7XYbQcyohSKdvAxIRSNghFl4e71hVoGnBNQz9cWaXxO2I10KTC+3jMdvvoKw6dQ=="; }; } { @@ -2718,7 +2726,7 @@ path = fetchurl { name = "parent_module___parent_module_1.0.1.tgz"; url = "https://registry.yarnpkg.com/parent-module/-/parent-module-1.0.1.tgz"; - sha1 = "691d2709e78c79fae3a156622452d00762caaaa2"; + sha512 = "GQ2EWRpQV8/o+Aw8YqtfZZPfNRWZYkbidE9k5rpl/hC3vtHHBfGm2Ifi6qWV+coDGkrUKZAxE3Lot5kcsRlh+g=="; }; } { @@ -2726,7 +2734,7 @@ path = fetchurl { name = "parse_json___parse_json_2.2.0.tgz"; url = "https://registry.yarnpkg.com/parse-json/-/parse-json-2.2.0.tgz"; - sha1 = "f480f40434ef80741f8469099f8dea18f55a4dc9"; + sha1 = "9ID0BDTvgHQfhGkJn43qGPVaTck="; }; } { @@ -2734,7 +2742,7 @@ path = fetchurl { name = "parse_json___parse_json_4.0.0.tgz"; url = "https://registry.yarnpkg.com/parse-json/-/parse-json-4.0.0.tgz"; - sha1 = "be35f5425be1f7f6c747184f98a788cb99477ee0"; + sha1 = "vjX1Qlvh9/bHRxhPmKeIy5lHfuA="; }; } { @@ -2742,7 +2750,7 @@ path = fetchurl { name = "pascalcase___pascalcase_0.1.1.tgz"; url = "https://registry.yarnpkg.com/pascalcase/-/pascalcase-0.1.1.tgz"; - sha1 = "b363e55e8006ca6fe21784d2db22bd15d7917f14"; + sha1 = "s2PlXoAGym/iF4TS2yK9FdeRfxQ="; }; } { @@ -2750,7 +2758,7 @@ path = fetchurl { name = "path_exists___path_exists_3.0.0.tgz"; url = "https://registry.yarnpkg.com/path-exists/-/path-exists-3.0.0.tgz"; - sha1 = "ce0ebeaa5f78cb18925ea7d810d7b59b010fd515"; + sha1 = "zg6+ql94yxiSXqfYENe1mwEP1RU="; }; } { @@ -2758,7 +2766,7 @@ path = fetchurl { name = "path_is_absolute___path_is_absolute_1.0.1.tgz"; url = "https://registry.yarnpkg.com/path-is-absolute/-/path-is-absolute-1.0.1.tgz"; - sha1 = "174b9268735534ffbc7ace6bf53a5a9e1b5c5f5f"; + sha1 = "F0uSaHNVNP+8es5r9TpanhtcX18="; }; } { @@ -2766,7 +2774,7 @@ path = fetchurl { name = "path_is_inside___path_is_inside_1.0.2.tgz"; url = "https://registry.yarnpkg.com/path-is-inside/-/path-is-inside-1.0.2.tgz"; - sha1 = "365417dede44430d1c11af61027facf074bdfc53"; + sha1 = "NlQX3t5EQw0cEa9hAn+s8HS9/FM="; }; } { @@ -2774,7 +2782,7 @@ path = fetchurl { name = "path_key___path_key_2.0.1.tgz"; url = "https://registry.yarnpkg.com/path-key/-/path-key-2.0.1.tgz"; - sha1 = "411cadb574c5a140d3a4b1910d40d80cc9f40b40"; + sha1 = "QRyttXTFoUDTpLGRDUDYDMn0C0A="; }; } { @@ -2782,7 +2790,7 @@ path = fetchurl { name = "path_parse___path_parse_1.0.6.tgz"; url = "https://registry.yarnpkg.com/path-parse/-/path-parse-1.0.6.tgz"; - sha1 = "d62dbb5679405d72c4737ec58600e9ddcf06d24c"; + sha512 = "GSmOT2EbHrINBf9SR7CDELwlJ8AENk3Qn7OikK4nFYAu3Ote2+JYNVvkpAEQm3/TLNEJFD/xZJjzyxg3KBWOzw=="; }; } { @@ -2790,7 +2798,7 @@ path = fetchurl { name = "path_type___path_type_2.0.0.tgz"; url = "https://registry.yarnpkg.com/path-type/-/path-type-2.0.0.tgz"; - sha1 = "f012ccb8415b7096fc2daa1054c3d72389594c73"; + sha1 = "8BLMuEFbcJb8LaoQVMPXI4lZTHM="; }; } { @@ -2798,7 +2806,7 @@ path = fetchurl { name = "pify___pify_2.3.0.tgz"; url = "https://registry.yarnpkg.com/pify/-/pify-2.3.0.tgz"; - sha1 = "ed141a6ac043a849ea588498e7dca8b15330e90c"; + sha1 = "7RQaasBDqEnqWISY59yosVMw6Qw="; }; } { @@ -2806,7 +2814,7 @@ path = fetchurl { name = "pify___pify_3.0.0.tgz"; url = "https://registry.yarnpkg.com/pify/-/pify-3.0.0.tgz"; - sha1 = "e5a4acd2c101fdf3d9a4d07f0dbc4db49dd28176"; + sha1 = "5aSs0sEB/fPZpNB/DbxNtJ3SgXY="; }; } { @@ -2814,7 +2822,7 @@ path = fetchurl { name = "pinkie_promise___pinkie_promise_2.0.1.tgz"; url = "https://registry.yarnpkg.com/pinkie-promise/-/pinkie-promise-2.0.1.tgz"; - sha1 = "2135d6dfa7a358c069ac9b178776288228450ffa"; + sha1 = "ITXW36ejWMBprJsXh3YogihFD/o="; }; } { @@ -2822,7 +2830,7 @@ path = fetchurl { name = "pinkie___pinkie_2.0.4.tgz"; url = "https://registry.yarnpkg.com/pinkie/-/pinkie-2.0.4.tgz"; - sha1 = "72556b80cfa0d48a974e80e77248e80ed4f7f870"; + sha1 = "clVrgM+g1IqXToDnckjoDtT3+HA="; }; } { @@ -2830,7 +2838,7 @@ path = fetchurl { name = "pkg_dir___pkg_dir_2.0.0.tgz"; url = "https://registry.yarnpkg.com/pkg-dir/-/pkg-dir-2.0.0.tgz"; - sha1 = "f6d5d1109e19d63edf428e0bd57e12777615334b"; + sha1 = "9tXREJ4Z1j7fQo4L1X4Sd3YVM0s="; }; } { @@ -2838,7 +2846,7 @@ path = fetchurl { name = "pkg_dir___pkg_dir_3.0.0.tgz"; url = "https://registry.yarnpkg.com/pkg-dir/-/pkg-dir-3.0.0.tgz"; - sha1 = "2749020f239ed990881b1f71210d51eb6523bea3"; + sha512 = "/E57AYkoeQ25qkxMj5PBOVgF8Kiu/h7cYS30Z5+R7WaiCCBfLq58ZI/dSeaEKb9WVJV5n/03QwrN3IeWIFllvw=="; }; } { @@ -2846,7 +2854,7 @@ path = fetchurl { name = "please_upgrade_node___please_upgrade_node_3.2.0.tgz"; url = "https://registry.yarnpkg.com/please-upgrade-node/-/please-upgrade-node-3.2.0.tgz"; - sha1 = "aeddd3f994c933e4ad98b99d9a556efa0e2fe942"; + sha512 = "gQR3WpIgNIKwBMVLkpMUeR3e1/E1y42bqDQZfql+kDeXd8COYfM8PQA4X6y7a8u9Ua9FHmsrrmirW2vHs45hWg=="; }; } { @@ -2854,7 +2862,7 @@ path = fetchurl { name = "pluralize___pluralize_7.0.0.tgz"; url = "https://registry.yarnpkg.com/pluralize/-/pluralize-7.0.0.tgz"; - sha1 = "298b89df8b93b0221dbf421ad2b1b1ea23fc6777"; + sha512 = "ARhBOdzS3e41FbkW/XWrTEtukqqLoK5+Z/4UeDaLuSW+39JPeFgs4gCGqsrJHVZX0fUrx//4OF0K1CUGwlIFow=="; }; } { @@ -2862,7 +2870,7 @@ path = fetchurl { name = "posix_character_classes___posix_character_classes_0.1.1.tgz"; url = "https://registry.yarnpkg.com/posix-character-classes/-/posix-character-classes-0.1.1.tgz"; - sha1 = "01eac0fe3b5af71a2a6c02feabb8c1fef7e00eab"; + sha1 = "AerA/jta9xoqbAL+q7jB/vfgDqs="; }; } { @@ -2870,7 +2878,7 @@ path = fetchurl { name = "prelude_ls___prelude_ls_1.1.2.tgz"; url = "https://registry.yarnpkg.com/prelude-ls/-/prelude-ls-1.1.2.tgz"; - sha1 = "21932a549f5e52ffd9a827f570e04be62a97da54"; + sha1 = "IZMqVJ9eUv/ZqCf1cOBL5iqX2lQ="; }; } { @@ -2878,7 +2886,7 @@ path = fetchurl { name = "prettier_eslint_cli___prettier_eslint_cli_4.7.1.tgz"; url = "https://registry.yarnpkg.com/prettier-eslint-cli/-/prettier-eslint-cli-4.7.1.tgz"; - sha1 = "3d103c494baa4e80b99ad53e2b9db7620101859f"; + sha512 = "hQbsGaEVz97oBBcKdsJ46khv0kOGkMyWrXzcFOXW6X8UuetZ/j0yDJkNJgUTVc6PVFbbzBXk+qgd5vos9qzXPQ=="; }; } { @@ -2886,7 +2894,7 @@ path = fetchurl { name = "prettier_eslint___prettier_eslint_8.8.2.tgz"; url = "https://registry.yarnpkg.com/prettier-eslint/-/prettier-eslint-8.8.2.tgz"; - sha1 = "fcb29a48ab4524e234680797fe70e9d136ccaf0b"; + sha512 = "2UzApPuxi2yRoyMlXMazgR6UcH9DKJhNgCviIwY3ixZ9THWSSrUww5vkiZ3C48WvpFl1M1y/oU63deSy1puWEA=="; }; } { @@ -2894,7 +2902,7 @@ path = fetchurl { name = "prettier___prettier_1.19.1.tgz"; url = "https://registry.yarnpkg.com/prettier/-/prettier-1.19.1.tgz"; - sha1 = "f7d7f5ff8a9cd872a7be4ca142095956a60797cb"; + sha512 = "s7PoyDv/II1ObgQunCbB9PdLmUcBZcnWOcxDh7O0N/UwDEsHyqkW+Qh28jW+mVuCdx7gLB0BotYI1Y6uI9iyew=="; }; } { @@ -2902,7 +2910,7 @@ path = fetchurl { name = "pretty_format___pretty_format_23.6.0.tgz"; url = "https://registry.yarnpkg.com/pretty-format/-/pretty-format-23.6.0.tgz"; - sha1 = "5eaac8eeb6b33b987b7fe6097ea6a8a146ab5760"; + sha512 = "zf9NV1NSlDLDjycnwm6hpFATCGl/K1lt0R/GdkAK2O5LN/rwJoB+Mh93gGJjut4YbmecbfgLWVGSTCr0Ewvvbw=="; }; } { @@ -2910,7 +2918,7 @@ path = fetchurl { name = "process_nextick_args___process_nextick_args_2.0.1.tgz"; url = "https://registry.yarnpkg.com/process-nextick-args/-/process-nextick-args-2.0.1.tgz"; - sha1 = "7820d9b16120cc55ca9ae7792680ae7dba6d7fe2"; + sha512 = "3ouUOpQhtgrbOa17J7+uxOTpITYWaGP7/AhoR3+A+/1e9skrzelGi/dXzEYyvbxubEF6Wn2ypscTKiKJFFn1ag=="; }; } { @@ -2918,7 +2926,7 @@ path = fetchurl { name = "progress___progress_2.0.3.tgz"; url = "https://registry.yarnpkg.com/progress/-/progress-2.0.3.tgz"; - sha1 = "7e8cf8d8f5b8f239c1bc68beb4eb78567d572ef8"; + sha512 = "7PiHtLll5LdnKIMw100I+8xJXR5gW2QwWYkT6iJva0bXitZKa/XMrSbdmg3r2Xnaidz9Qumd0VPaMrZlF9V9sA=="; }; } { @@ -2926,7 +2934,7 @@ path = fetchurl { name = "prop_types___prop_types_15.7.2.tgz"; url = "https://registry.yarnpkg.com/prop-types/-/prop-types-15.7.2.tgz"; - sha1 = "52c41e75b8c87e72b9d9360e0206b99dcbffa6c5"; + sha512 = "8QQikdH7//R2vurIJSutZ1smHYTcLpRWEOlHnzcWHmBYrOGUysKwSsrC89BCiFj3CbrfJ/nXFdJepOVrY1GCHQ=="; }; } { @@ -2934,7 +2942,7 @@ path = fetchurl { name = "property_expr___property_expr_1.5.1.tgz"; url = "https://registry.yarnpkg.com/property-expr/-/property-expr-1.5.1.tgz"; - sha1 = "22e8706894a0c8e28d58735804f6ba3a3673314f"; + sha512 = "CGuc0VUTGthpJXL36ydB6jnbyOf/rAHFvmVrJlH+Rg0DqqLFQGAP6hIaxD/G0OAmBJPhXDHuEJigrp0e0wFV6g=="; }; } { @@ -2942,7 +2950,7 @@ path = fetchurl { name = "pseudomap___pseudomap_1.0.2.tgz"; url = "https://registry.yarnpkg.com/pseudomap/-/pseudomap-1.0.2.tgz"; - sha1 = "f052a28da70e618917ef0a8ac34c1ae5a68286b3"; + sha1 = "8FKijacOYYkX7wqKw0wa5aaChrM="; }; } { @@ -2950,7 +2958,7 @@ path = fetchurl { name = "pump___pump_3.0.0.tgz"; url = "https://registry.yarnpkg.com/pump/-/pump-3.0.0.tgz"; - sha1 = "b4a2116815bde2f4e1ea602354e8c75565107a64"; + sha512 = "LwZy+p3SFs1Pytd/jYct4wpv49HiYCqd9Rlc5ZVdk0V+8Yzv6jR5Blk3TRmPL1ft69TxP0IMZGJ+WPFU2BFhww=="; }; } { @@ -2958,7 +2966,7 @@ path = fetchurl { name = "punycode___punycode_2.1.1.tgz"; url = "https://registry.yarnpkg.com/punycode/-/punycode-2.1.1.tgz"; - sha1 = "b58b010ac40c22c5657616c8d2c2c02c7bf479ec"; + sha512 = "XRsRjdf+j5ml+y/6GKHPZbrF/8p2Yga0JPtdqTIY2Xe5ohJPD9saDJJLPvp9+NSBprVvevdXZybnj2cv8OEd0A=="; }; } { @@ -2966,7 +2974,7 @@ path = fetchurl { name = "quick_lru___quick_lru_1.1.0.tgz"; url = "https://registry.yarnpkg.com/quick-lru/-/quick-lru-1.1.0.tgz"; - sha1 = "4360b17c61136ad38078397ff11416e186dcfbb8"; + sha1 = "Q2CxfGETatOAeDl/8RQW4Ybc+7g="; }; } { @@ -2974,7 +2982,7 @@ path = fetchurl { name = "ramda___ramda_0.26.1.tgz"; url = "https://registry.yarnpkg.com/ramda/-/ramda-0.26.1.tgz"; - sha1 = "8d41351eb8111c55353617fc3bbffad8e4d35d06"; + sha512 = "hLWjpy7EnsDBb0p+Z3B7rPi3GDeRG5ZtiI33kJhTt+ORCd38AbAIjB/9zRIUoeTbE/AVX5ZkU7m6bznsvrf8eQ=="; }; } { @@ -2982,7 +2990,7 @@ path = fetchurl { name = "react_is___react_is_16.13.1.tgz"; url = "https://registry.yarnpkg.com/react-is/-/react-is-16.13.1.tgz"; - sha1 = "789729a4dc36de2999dc156dd6c1d9c18cea56a4"; + sha512 = "24e6ynE2H+OKt4kqsOvNd8kBpV65zoxbA4BVsEOB3ARVWQki/DHzaUoC5KuON/BiccDaCCTZBuOcfZs70kR8bQ=="; }; } { @@ -2990,7 +2998,7 @@ path = fetchurl { name = "read_pkg_up___read_pkg_up_2.0.0.tgz"; url = "https://registry.yarnpkg.com/read-pkg-up/-/read-pkg-up-2.0.0.tgz"; - sha1 = "6b72a8048984e0c41e79510fd5e9fa99b3b549be"; + sha1 = "a3KoBImE4MQeeVEP1en6mbO1Sb4="; }; } { @@ -2998,7 +3006,7 @@ path = fetchurl { name = "read_pkg___read_pkg_2.0.0.tgz"; url = "https://registry.yarnpkg.com/read-pkg/-/read-pkg-2.0.0.tgz"; - sha1 = "8ef1c0623c6a6db0dc6713c4bfac46332b2368f8"; + sha1 = "jvHAYjxqbbDcZxPEv6xGMysjaPg="; }; } { @@ -3006,7 +3014,7 @@ path = fetchurl { name = "read_pkg___read_pkg_4.0.1.tgz"; url = "https://registry.yarnpkg.com/read-pkg/-/read-pkg-4.0.1.tgz"; - sha1 = "963625378f3e1c4d48c85872b5a6ec7d5d093237"; + sha1 = "ljYlN48+HE1IyFhytabsfV0JMjc="; }; } { @@ -3014,7 +3022,7 @@ path = fetchurl { name = "readable_stream___readable_stream_2.3.7.tgz"; url = "https://registry.yarnpkg.com/readable-stream/-/readable-stream-2.3.7.tgz"; - sha1 = "1eca1cf711aef814c04f62252a36a62f6cb23b57"; + sha512 = "Ebho8K4jIbHAxnuxi7o42OrZgF/ZTNcsZj6nRKyUmkhLFq8CHItp/fy6hQZuZmP/n3yZ9VBUbp4zz/mX8hmYPw=="; }; } { @@ -3022,7 +3030,7 @@ path = fetchurl { name = "regenerator_runtime___regenerator_runtime_0.11.1.tgz"; url = "https://registry.yarnpkg.com/regenerator-runtime/-/regenerator-runtime-0.11.1.tgz"; - sha1 = "be05ad7f9bf7d22e056f9726cee5017fbf19e2e9"; + sha512 = "MguG95oij0fC3QV3URf4V2SDYGJhJnJGqvIIgdECeODCT98wSWDAJ94SSuVpYQUoTcGUIL6L4yNB7j1DFFHSBg=="; }; } { @@ -3030,7 +3038,7 @@ path = fetchurl { name = "regenerator_runtime___regenerator_runtime_0.13.5.tgz"; url = "https://registry.yarnpkg.com/regenerator-runtime/-/regenerator-runtime-0.13.5.tgz"; - sha1 = "d878a1d094b4306d10b9096484b33ebd55e26697"; + sha512 = "ZS5w8CpKFinUzOwW3c83oPeVXoNsrLsaCoLtJvAClH135j/R77RuymhiSErhm2lKcwSCIpmvIWSbDkIfAqKQlA=="; }; } { @@ -3038,7 +3046,7 @@ path = fetchurl { name = "regex_not___regex_not_1.0.2.tgz"; url = "https://registry.yarnpkg.com/regex-not/-/regex-not-1.0.2.tgz"; - sha1 = "1f4ece27e00b0b65e0247a6810e6a85d83a5752c"; + sha512 = "J6SDjUgDxQj5NusnOtdFxDwN/+HWykR8GELwctJ7mdqhcyy1xEc4SRFHUXvxTp661YaVKAjfRLZ9cCqS6tn32A=="; }; } { @@ -3046,7 +3054,7 @@ path = fetchurl { name = "regexp.prototype.flags___regexp.prototype.flags_1.3.0.tgz"; url = "https://registry.yarnpkg.com/regexp.prototype.flags/-/regexp.prototype.flags-1.3.0.tgz"; - sha1 = "7aba89b3c13a64509dabcf3ca8d9fbb9bdf5cb75"; + sha512 = "2+Q0C5g951OlYlJz6yu5/M33IcsESLlLfsyIaLJaG4FA2r4yP8MvVMJUUP/fVBkSpbbbZlS5gynbEWLipiiXiQ=="; }; } { @@ -3054,7 +3062,7 @@ path = fetchurl { name = "regexpp___regexpp_1.1.0.tgz"; url = "https://registry.yarnpkg.com/regexpp/-/regexpp-1.1.0.tgz"; - sha1 = "0e3516dd0b7904f413d2d4193dce4618c3a689ab"; + sha512 = "LOPw8FpgdQF9etWMaAfG/WRthIdXJGYp4mJ2Jgn/2lpkbod9jPn0t9UqN7AxBOKNfzRbYyVfgc7Vk4t/MpnXgw=="; }; } { @@ -3062,7 +3070,7 @@ path = fetchurl { name = "regexpp___regexpp_2.0.1.tgz"; url = "https://registry.yarnpkg.com/regexpp/-/regexpp-2.0.1.tgz"; - sha1 = "8d19d31cf632482b589049f8281f93dbcba4d07f"; + sha512 = "lv0M6+TkDVniA3aD1Eg0DVpfU/booSu7Eev3TDO/mZKHBfVjgCGTV4t4buppESEYDtkArYFOxTJWv6S5C+iaNw=="; }; } { @@ -3070,7 +3078,7 @@ path = fetchurl { name = "repeat_element___repeat_element_1.1.3.tgz"; url = "https://registry.yarnpkg.com/repeat-element/-/repeat-element-1.1.3.tgz"; - sha1 = "782e0d825c0c5a3bb39731f84efee6b742e6b1ce"; + sha512 = "ahGq0ZnV5m5XtZLMb+vP76kcAM5nkLqk0lpqAuojSKGgQtn4eRi4ZZGm2olo2zKFH+sMsWaqOCW1dqAnOru72g=="; }; } { @@ -3078,7 +3086,7 @@ path = fetchurl { name = "repeat_string___repeat_string_1.6.1.tgz"; url = "https://registry.yarnpkg.com/repeat-string/-/repeat-string-1.6.1.tgz"; - sha1 = "8dcae470e1c88abc2d600fff4a776286da75e637"; + sha1 = "jcrkcOHIirwtYA//Sndihtp15jc="; }; } { @@ -3086,7 +3094,7 @@ path = fetchurl { name = "require_directory___require_directory_2.1.1.tgz"; url = "https://registry.yarnpkg.com/require-directory/-/require-directory-2.1.1.tgz"; - sha1 = "8c64ad5fd30dab1c976e2344ffe7f792a6a6df42"; + sha1 = "jGStX9MNqxyXbiNE/+f3kqam30I="; }; } { @@ -3094,7 +3102,7 @@ path = fetchurl { name = "require_main_filename___require_main_filename_1.0.1.tgz"; url = "https://registry.yarnpkg.com/require-main-filename/-/require-main-filename-1.0.1.tgz"; - sha1 = "97f717b69d48784f5f526a6c5aa8ffdda055a4d1"; + sha1 = "l/cXtp1IeE9fUmpsWqj/3aBVpNE="; }; } { @@ -3102,7 +3110,7 @@ path = fetchurl { name = "require_relative___require_relative_0.8.7.tgz"; url = "https://registry.yarnpkg.com/require-relative/-/require-relative-0.8.7.tgz"; - sha1 = "7999539fc9e047a37928fa196f8e1563dabd36de"; + sha1 = "eZlTn8ngR6N5KPoZb44VY9q9Nt4="; }; } { @@ -3110,7 +3118,7 @@ path = fetchurl { name = "require_uncached___require_uncached_1.0.3.tgz"; url = "https://registry.yarnpkg.com/require-uncached/-/require-uncached-1.0.3.tgz"; - sha1 = "4e0d56d6c9662fd31e43011c4b95aa49955421d3"; + sha1 = "Tg1W1slmL9MeQwEcS5WqSZVUIdM="; }; } { @@ -3118,7 +3126,7 @@ path = fetchurl { name = "reserved_words___reserved_words_0.1.2.tgz"; url = "https://registry.yarnpkg.com/reserved-words/-/reserved-words-0.1.2.tgz"; - sha1 = "00a0940f98cd501aeaaac316411d9adc52b31ab1"; + sha1 = "AKCUD5jNUBrqqsMWQR2a3FKzGrE="; }; } { @@ -3126,7 +3134,7 @@ path = fetchurl { name = "resolve_from___resolve_from_1.0.1.tgz"; url = "https://registry.yarnpkg.com/resolve-from/-/resolve-from-1.0.1.tgz"; - sha1 = "26cbfe935d1aeeeabb29bc3fe5aeb01e93d44226"; + sha1 = "Jsv+k10a7uq7Kbw/5a6wHpPUQiY="; }; } { @@ -3134,7 +3142,7 @@ path = fetchurl { name = "resolve_from___resolve_from_3.0.0.tgz"; url = "https://registry.yarnpkg.com/resolve-from/-/resolve-from-3.0.0.tgz"; - sha1 = "b22c7af7d9d6881bc8b6e653335eebcb0a188748"; + sha1 = "six699nWiBvItuZTM17rywoYh0g="; }; } { @@ -3142,7 +3150,7 @@ path = fetchurl { name = "resolve_from___resolve_from_4.0.0.tgz"; url = "https://registry.yarnpkg.com/resolve-from/-/resolve-from-4.0.0.tgz"; - sha1 = "4abcd852ad32dd7baabfe9b40e00a36db5f392e6"; + sha512 = "pb/MYmXstAkysRFx8piNI1tGFNQIFA3vkE3Gq4EuA1dF6gHp/+vgZqsCGJapvy8N3Q+4o7FwvquPJcnZ7RYy4g=="; }; } { @@ -3150,7 +3158,7 @@ path = fetchurl { name = "resolve_url___resolve_url_0.2.1.tgz"; url = "https://registry.yarnpkg.com/resolve-url/-/resolve-url-0.2.1.tgz"; - sha1 = "2c637fe77c893afd2a663fe21aa9080068e2052a"; + sha1 = "LGN/53yJOv0qZj/iGqkIAGjiBSo="; }; } { @@ -3158,7 +3166,7 @@ path = fetchurl { name = "resolve___resolve_1.17.0.tgz"; url = "https://registry.yarnpkg.com/resolve/-/resolve-1.17.0.tgz"; - sha1 = "b25941b54968231cc2d1bb76a79cb7f2c0bf8444"; + sha512 = "ic+7JYiV8Vi2yzQGFWOkiZD5Z9z7O2Zhm9XMaTxdJExKasieFCr+yXZ/WmXsckHiKl12ar0y6XiXDx3m4RHn1w=="; }; } { @@ -3166,7 +3174,7 @@ path = fetchurl { name = "restore_cursor___restore_cursor_2.0.0.tgz"; url = "https://registry.yarnpkg.com/restore-cursor/-/restore-cursor-2.0.0.tgz"; - sha1 = "9f7ee287f82fd326d4fd162923d62129eee0dfaf"; + sha1 = "n37ih/gv0ybU/RYpI9YhKe7g368="; }; } { @@ -3174,7 +3182,7 @@ path = fetchurl { name = "ret___ret_0.1.15.tgz"; url = "https://registry.yarnpkg.com/ret/-/ret-0.1.15.tgz"; - sha1 = "b8a4825d5bdb1fc3f6f53c2bc33f81388681c7bc"; + sha512 = "TTlYpa+OL+vMMNG24xSlQGEJ3B/RzEfUlLct7b5G/ytav+wPrplCpVMFuwzXbkecJrb6IYo1iFb0S9v37754mg=="; }; } { @@ -3182,7 +3190,7 @@ path = fetchurl { name = "rimraf___rimraf_2.6.3.tgz"; url = "https://registry.yarnpkg.com/rimraf/-/rimraf-2.6.3.tgz"; - sha1 = "b2d104fe0d8fb27cf9e0a1cda8262dd3833c6cab"; + sha512 = "mwqeW5XsA2qAejG46gYdENaxXjx9onRNCfn7L0duuP4hCuTIi/QO7PDK07KJfp1d+izWPrzEJDcSqBa0OZQriA=="; }; } { @@ -3190,7 +3198,7 @@ path = fetchurl { name = "rimraf___rimraf_2.7.1.tgz"; url = "https://registry.yarnpkg.com/rimraf/-/rimraf-2.7.1.tgz"; - sha1 = "35797f13a7fdadc566142c29d4f07ccad483e3ec"; + sha512 = "uWjbaKIK3T1OSVptzX7Nl6PvQ3qAGtKEtVRjRuazjfL3Bx5eI409VZSqgND+4UNnmzLVdPj9FqFJNPqBZFve4w=="; }; } { @@ -3198,7 +3206,7 @@ path = fetchurl { name = "run_async___run_async_2.4.1.tgz"; url = "https://registry.yarnpkg.com/run-async/-/run-async-2.4.1.tgz"; - sha1 = "8440eccf99ea3e70bd409d49aab88e10c189a455"; + sha512 = "tvVnVv01b8c1RrA6Ep7JkStj85Guv/YrMcwqYQnwjsAS2cTmmPGBBjAjpCW7RrSodNSoE2/qg9O4bceNvUuDgQ=="; }; } { @@ -3206,7 +3214,7 @@ path = fetchurl { name = "run_node___run_node_1.0.0.tgz"; url = "https://registry.yarnpkg.com/run-node/-/run-node-1.0.0.tgz"; - sha1 = "46b50b946a2aa2d4947ae1d886e9856fd9cabe5e"; + sha512 = "kc120TBlQ3mih1LSzdAJXo4xn/GWS2ec0l3S+syHDXP9uRr0JAT8Qd3mdMuyjqCzeZktgP3try92cEgf9Nks8A=="; }; } { @@ -3214,7 +3222,7 @@ path = fetchurl { name = "rx_lite_aggregates___rx_lite_aggregates_4.0.8.tgz"; url = "https://registry.yarnpkg.com/rx-lite-aggregates/-/rx-lite-aggregates-4.0.8.tgz"; - sha1 = "753b87a89a11c95467c4ac1626c4efc4e05c67be"; + sha1 = "dTuHqJoRyVRnxKwWJsTvxOBcZ74="; }; } { @@ -3222,7 +3230,7 @@ path = fetchurl { name = "rx_lite___rx_lite_4.0.8.tgz"; url = "https://registry.yarnpkg.com/rx-lite/-/rx-lite-4.0.8.tgz"; - sha1 = "0b1e11af8bc44836f04a6407e92da42467b79444"; + sha1 = "Cx4Rr4vESDbwSmQH6S2kJGe3lEQ="; }; } { @@ -3230,7 +3238,7 @@ path = fetchurl { name = "rxjs___rxjs_5.5.12.tgz"; url = "https://registry.yarnpkg.com/rxjs/-/rxjs-5.5.12.tgz"; - sha1 = "6fa61b8a77c3d793dbaf270bee2f43f652d741cc"; + sha512 = "xx2itnL5sBbqeeiVgNPVuQQ1nC8Jp2WfNJhXWHmElW9YmrpS9UVnNzhP3EH3HFqexO5Tlp8GhYY+WEcqcVMvGw=="; }; } { @@ -3238,7 +3246,7 @@ path = fetchurl { name = "rxjs___rxjs_6.5.5.tgz"; url = "https://registry.yarnpkg.com/rxjs/-/rxjs-6.5.5.tgz"; - sha1 = "c5c884e3094c8cfee31bf27eb87e54ccfc87f9ec"; + sha512 = "WfQI+1gohdf0Dai/Bbmk5L5ItH5tYqm3ki2c5GdWhKjalzjg93N3avFjVStyZZz+A2Em+ZxKH5bNghw9UeylGQ=="; }; } { @@ -3246,7 +3254,7 @@ path = fetchurl { name = "safe_buffer___safe_buffer_5.1.2.tgz"; url = "https://registry.yarnpkg.com/safe-buffer/-/safe-buffer-5.1.2.tgz"; - sha1 = "991ec69d296e0313747d59bdfd2b745c35f8828d"; + sha512 = "Gd2UZBJDkXlY7GbJxfsE8/nvKkUEU1G38c1siN6QP6a9PT9MmHB8GnpscSmMJSoF8LOIrt8ud/wPtojys4G6+g=="; }; } { @@ -3254,7 +3262,7 @@ path = fetchurl { name = "safe_regex___safe_regex_1.1.0.tgz"; url = "https://registry.yarnpkg.com/safe-regex/-/safe-regex-1.1.0.tgz"; - sha1 = "40a3669f3b077d1e943d44629e157dd48023bf2e"; + sha1 = "QKNmnzsHfR6UPURinhV91IAjvy4="; }; } { @@ -3262,7 +3270,7 @@ path = fetchurl { name = "safer_buffer___safer_buffer_2.1.2.tgz"; url = "https://registry.yarnpkg.com/safer-buffer/-/safer-buffer-2.1.2.tgz"; - sha1 = "44fa161b0187b9549dd84bb91802f9bd8385cd6a"; + sha512 = "YZo3K82SD7Riyi0E1EQPojLz7kpepnSQI9IyPbHHg1XXXevb5dJI7tpyN2ADxGcQbHG7vcyRHk0cbwqcQriUtg=="; }; } { @@ -3270,7 +3278,7 @@ path = fetchurl { name = "semver_compare___semver_compare_1.0.0.tgz"; url = "https://registry.yarnpkg.com/semver-compare/-/semver-compare-1.0.0.tgz"; - sha1 = "0dee216a1c941ab37e9efb1788f6afc5ff5537fc"; + sha1 = "De4hahyUGrN+nvsXiPavxf9VN/w="; }; } { @@ -3278,7 +3286,7 @@ path = fetchurl { name = "semver___semver_5.7.1.tgz"; url = "https://registry.yarnpkg.com/semver/-/semver-5.7.1.tgz"; - sha1 = "a954f931aeba508d307bbf069eff0c01c96116f7"; + sha512 = "sauaDf/PZdVgrLTNYHRtpXa1iRiKcaebiKQ1BJdpQlWH2lCvexQdX55snPFyK7QzpudqbCI0qXFfOasHdyNDGQ=="; }; } { @@ -3286,7 +3294,7 @@ path = fetchurl { name = "semver___semver_5.5.0.tgz"; url = "https://registry.yarnpkg.com/semver/-/semver-5.5.0.tgz"; - sha1 = "dc4bbc7a6ca9d916dee5d43516f0092b58f7b8ab"; + sha512 = "4SJ3dm0WAwWy/NVeioZh5AntkdJoWKxHxcmyP622fOkgHa4z3R0TdBJICINyaSDE6uNwVc8gZr+ZinwZAH4xIA=="; }; } { @@ -3294,7 +3302,7 @@ path = fetchurl { name = "set_blocking___set_blocking_2.0.0.tgz"; url = "https://registry.yarnpkg.com/set-blocking/-/set-blocking-2.0.0.tgz"; - sha1 = "045f9782d011ae9a6803ddd382b24392b3d890f7"; + sha1 = "BF+XgtARrppoA93TgrJDkrPYkPc="; }; } { @@ -3302,7 +3310,7 @@ path = fetchurl { name = "set_value___set_value_2.0.1.tgz"; url = "https://registry.yarnpkg.com/set-value/-/set-value-2.0.1.tgz"; - sha1 = "a18d40530e6f07de4228c7defe4227af8cad005b"; + sha512 = "JxHc1weCN68wRY0fhCoXpyK55m/XPHafOmK4UWD7m2CI14GMcFypt4w/0+NV5f/ZMby2F6S2wwA7fgynh9gWSw=="; }; } { @@ -3310,7 +3318,7 @@ path = fetchurl { name = "shebang_command___shebang_command_1.2.0.tgz"; url = "https://registry.yarnpkg.com/shebang-command/-/shebang-command-1.2.0.tgz"; - sha1 = "44aac65b695b03398968c39f363fee5deafdf1ea"; + sha1 = "RKrGW2lbAzmJaMOfNj/uXer98eo="; }; } { @@ -3318,7 +3326,7 @@ path = fetchurl { name = "shebang_regex___shebang_regex_1.0.0.tgz"; url = "https://registry.yarnpkg.com/shebang-regex/-/shebang-regex-1.0.0.tgz"; - sha1 = "da42f49740c0b42db2ca9728571cb190c98efea3"; + sha1 = "2kL0l0DAtC2yypcoVxyxkMmO/qM="; }; } { @@ -3326,7 +3334,7 @@ path = fetchurl { name = "side_channel___side_channel_1.0.2.tgz"; url = "https://registry.yarnpkg.com/side-channel/-/side-channel-1.0.2.tgz"; - sha1 = "df5d1abadb4e4bf4af1cd8852bf132d2f7876947"; + sha512 = "7rL9YlPHg7Ancea1S96Pa8/QWb4BtXL/TZvS6B8XFetGBeuhAsfmUspK6DokBeZ64+Kj9TCNRD/30pVz1BvQNA=="; }; } { @@ -3334,7 +3342,7 @@ path = fetchurl { name = "signal_exit___signal_exit_3.0.3.tgz"; url = "https://registry.yarnpkg.com/signal-exit/-/signal-exit-3.0.3.tgz"; - sha1 = "a1410c2edd8f077b08b4e253c8eacfcaf057461c"; + sha512 = "VUJ49FC8U1OxwZLxIbTTrDvLnf/6TDgxZcK8wxR8zs13xpx7xbG60ndBlhNrFi2EMuFRoeDoJO7wthSLq42EjA=="; }; } { @@ -3342,7 +3350,7 @@ path = fetchurl { name = "simple_git___simple_git_1.132.0.tgz"; url = "https://registry.yarnpkg.com/simple-git/-/simple-git-1.132.0.tgz"; - sha1 = "53ac4c5ec9e74e37c2fd461e23309f22fcdf09b1"; + sha512 = "xauHm1YqCTom1sC9eOjfq3/9RKiUA9iPnxBbrY2DdL8l4ADMu0jjM5l5lphQP5YWNqAL2aXC/OeuQ76vHtW5fg=="; }; } { @@ -3350,7 +3358,7 @@ path = fetchurl { name = "slash___slash_2.0.0.tgz"; url = "https://registry.yarnpkg.com/slash/-/slash-2.0.0.tgz"; - sha1 = "de552851a1759df3a8f206535442f5ec4ddeab44"; + sha512 = "ZYKh3Wh2z1PpEXWr0MpSBZ0V6mZHAQfYevttO11c51CaWjGTaadiKZ+wVt1PbMlDV5qhMFslpZCemhwOK7C89A=="; }; } { @@ -3358,7 +3366,7 @@ path = fetchurl { name = "slice_ansi___slice_ansi_0.0.4.tgz"; url = "https://registry.yarnpkg.com/slice-ansi/-/slice-ansi-0.0.4.tgz"; - sha1 = "edbf8903f66f7ce2f8eafd6ceed65e264c831b35"; + sha1 = "7b+JA/ZvfOL46v1s7tZeJkyDGzU="; }; } { @@ -3366,7 +3374,7 @@ path = fetchurl { name = "slice_ansi___slice_ansi_1.0.0.tgz"; url = "https://registry.yarnpkg.com/slice-ansi/-/slice-ansi-1.0.0.tgz"; - sha1 = "044f1a49d8842ff307aad6b505ed178bd950134d"; + sha512 = "POqxBK6Lb3q6s047D/XsDVNPnF9Dl8JSaqe9h9lURl0OdNqy/ujDrOiIHtsqXMGbWWTIomRzAMaTyawAU//Reg=="; }; } { @@ -3374,7 +3382,7 @@ path = fetchurl { name = "slice_ansi___slice_ansi_2.1.0.tgz"; url = "https://registry.yarnpkg.com/slice-ansi/-/slice-ansi-2.1.0.tgz"; - sha1 = "cacd7693461a637a5788d92a7dd4fba068e81636"; + sha512 = "Qu+VC3EwYLldKa1fCxuuvULvSJOKEgk9pi8dZeCVK7TqBfUNTH4sFkk4joj8afVSfAYgJoSOetjx9QWOJ5mYoQ=="; }; } { @@ -3382,7 +3390,7 @@ path = fetchurl { name = "snapdragon_node___snapdragon_node_2.1.1.tgz"; url = "https://registry.yarnpkg.com/snapdragon-node/-/snapdragon-node-2.1.1.tgz"; - sha1 = "6c175f86ff14bdb0724563e8f3c1b021a286853b"; + sha512 = "O27l4xaMYt/RSQ5TR3vpWCAB5Kb/czIcqUFOM/C4fYcLnbZUc1PkjTAMjof2pBWaSTwOUd6qUHcFGVGj7aIwnw=="; }; } { @@ -3390,7 +3398,7 @@ path = fetchurl { name = "snapdragon_util___snapdragon_util_3.0.1.tgz"; url = "https://registry.yarnpkg.com/snapdragon-util/-/snapdragon-util-3.0.1.tgz"; - sha1 = "f956479486f2acd79700693f6f7b805e45ab56e2"; + sha512 = "mbKkMdQKsjX4BAL4bRYTj21edOf8cN7XHdYUJEe+Zn99hVEYcMvKPct1IqNe7+AZPirn8BCDOQBHQZknqmKlZQ=="; }; } { @@ -3398,7 +3406,7 @@ path = fetchurl { name = "snapdragon___snapdragon_0.8.2.tgz"; url = "https://registry.yarnpkg.com/snapdragon/-/snapdragon-0.8.2.tgz"; - sha1 = "64922e7c565b0e14204ba1aa7d6964278d25182d"; + sha512 = "FtyOnWN/wCHTVXOMwvSv26d+ko5vWlIDD6zoUJ7LW8vh+ZBC8QdljveRP+crNrtBwioEUWy/4dMtbBjA4ioNlg=="; }; } { @@ -3406,7 +3414,7 @@ path = fetchurl { name = "source_map_resolve___source_map_resolve_0.5.3.tgz"; url = "https://registry.yarnpkg.com/source-map-resolve/-/source-map-resolve-0.5.3.tgz"; - sha1 = "190866bece7553e1f8f267a2ee82c606b5509a1a"; + sha512 = "Htz+RnsXWk5+P2slx5Jh3Q66vhQj1Cllm0zvnaY98+NFx+Dv2CF/f5O/t8x+KaNdrdIAsruNzoh/KpialbqAnw=="; }; } { @@ -3414,7 +3422,7 @@ path = fetchurl { name = "source_map_url___source_map_url_0.4.0.tgz"; url = "https://registry.yarnpkg.com/source-map-url/-/source-map-url-0.4.0.tgz"; - sha1 = "3e935d7ddd73631b97659956d55128e87b5084a3"; + sha1 = "PpNdfd1zYxuXZZlW1VEo6HtQhKM="; }; } { @@ -3422,7 +3430,7 @@ path = fetchurl { name = "source_map___source_map_0.5.7.tgz"; url = "https://registry.yarnpkg.com/source-map/-/source-map-0.5.7.tgz"; - sha1 = "8a039d2d1021d22d1ea14c80d8ea468ba2ef3fcc"; + sha1 = "igOdLRAh0i0eoUyA2OpGi6LvP8w="; }; } { @@ -3430,7 +3438,7 @@ path = fetchurl { name = "spdx_correct___spdx_correct_3.1.0.tgz"; url = "https://registry.yarnpkg.com/spdx-correct/-/spdx-correct-3.1.0.tgz"; - sha1 = "fb83e504445268f154b074e218c87c003cd31df4"; + sha512 = "lr2EZCctC2BNR7j7WzJ2FpDznxky1sjfxvvYEyzxNyb6lZXHODmEoJeFu4JupYlkfha1KZpJyoqiJ7pgA1qq8Q=="; }; } { @@ -3438,7 +3446,7 @@ path = fetchurl { name = "spdx_exceptions___spdx_exceptions_2.3.0.tgz"; url = "https://registry.yarnpkg.com/spdx-exceptions/-/spdx-exceptions-2.3.0.tgz"; - sha1 = "3f28ce1a77a00372683eade4a433183527a2163d"; + sha512 = "/tTrYOC7PPI1nUAgx34hUpqXuyJG+DTHJTnIULG4rDygi4xu/tfgmq1e1cIRwRzwZgo4NLySi+ricLkZkw4i5A=="; }; } { @@ -3446,7 +3454,7 @@ path = fetchurl { name = "spdx_expression_parse___spdx_expression_parse_3.0.1.tgz"; url = "https://registry.yarnpkg.com/spdx-expression-parse/-/spdx-expression-parse-3.0.1.tgz"; - sha1 = "cf70f50482eefdc98e3ce0a6833e4a53ceeba679"; + sha512 = "cbqHunsQWnJNE6KhVSMsMeH5H/L9EpymbzqTQ3uLwNCLZ1Q481oWaofqH7nO6V07xlXwY6PhQdQ2IedWx/ZK4Q=="; }; } { @@ -3454,7 +3462,7 @@ path = fetchurl { name = "spdx_license_ids___spdx_license_ids_3.0.5.tgz"; url = "https://registry.yarnpkg.com/spdx-license-ids/-/spdx-license-ids-3.0.5.tgz"; - sha1 = "3694b5804567a458d3c8045842a6358632f62654"; + sha512 = "J+FWzZoynJEXGphVIS+XEh3kFSjZX/1i9gFBaWQcB+/tmpe2qUsSBABpcxqxnAxFdiUFEgAX1bjYGQvIZmoz9Q=="; }; } { @@ -3462,7 +3470,7 @@ path = fetchurl { name = "split_string___split_string_3.1.0.tgz"; url = "https://registry.yarnpkg.com/split-string/-/split-string-3.1.0.tgz"; - sha1 = "7cb09dda3a86585705c64b39a6466038682e8fe2"; + sha512 = "NzNVhJDYpwceVVii8/Hu6DKfD2G+NrQHlS/V/qgv763EYudVwEcMQNxd2lh+0VrUByXN/oJkl5grOhYWvQUYiw=="; }; } { @@ -3470,7 +3478,15 @@ path = fetchurl { name = "sprintf_js___sprintf_js_1.0.3.tgz"; url = "https://registry.yarnpkg.com/sprintf-js/-/sprintf-js-1.0.3.tgz"; - sha1 = "04e6926f662895354f3dd015203633b857297e2c"; + sha1 = "BOaSb2YolTVPPdAVIDYzuFcpfiw="; + }; + } + { + name = "ssri___ssri_10.0.0.tgz"; + path = fetchurl { + name = "ssri___ssri_10.0.0.tgz"; + url = "https://registry.yarnpkg.com/ssri/-/ssri-10.0.0.tgz"; + sha512 = "64ghGOpqW0k+jh7m5jndBGdVEoPikWwGQmBNN5ks6jyUSMymzHDTlnNHOvzp+6MmHOljr2MokUzvRksnTwG0Iw=="; }; } { @@ -3478,7 +3494,7 @@ path = fetchurl { name = "staged_git_files___staged_git_files_1.1.2.tgz"; url = "https://registry.yarnpkg.com/staged-git-files/-/staged-git-files-1.1.2.tgz"; - sha1 = "4326d33886dc9ecfa29a6193bf511ba90a46454b"; + sha512 = "0Eyrk6uXW6tg9PYkhi/V/J4zHp33aNyi2hOCmhFLqLTIhbgqWn5jlSzI+IU0VqrZq6+DbHcabQl/WP6P3BG0QA=="; }; } { @@ -3486,7 +3502,7 @@ path = fetchurl { name = "static_extend___static_extend_0.1.2.tgz"; url = "https://registry.yarnpkg.com/static-extend/-/static-extend-0.1.2.tgz"; - sha1 = "60809c39cbff55337226fd5e0b520f341f1fb5c6"; + sha1 = "YICcOcv/VTNyJv1eC1IPNB8ftcY="; }; } { @@ -3494,7 +3510,7 @@ path = fetchurl { name = "string_argv___string_argv_0.0.2.tgz"; url = "https://registry.yarnpkg.com/string-argv/-/string-argv-0.0.2.tgz"; - sha1 = "dac30408690c21f3c3630a3ff3a05877bdcbd736"; + sha1 = "2sMECGkMIfPDYwo/86BYd73L1zY="; }; } { @@ -3502,7 +3518,7 @@ path = fetchurl { name = "string_width___string_width_1.0.2.tgz"; url = "https://registry.yarnpkg.com/string-width/-/string-width-1.0.2.tgz"; - sha1 = "118bdf5b8cdc51a2a7e70d211e07e2b0b9b107d3"; + sha1 = "EYvfW4zcUaKn5w0hHgfisLmxB9M="; }; } { @@ -3510,7 +3526,7 @@ path = fetchurl { name = "string_width___string_width_2.1.1.tgz"; url = "https://registry.yarnpkg.com/string-width/-/string-width-2.1.1.tgz"; - sha1 = "ab93f27a8dc13d28cac815c462143a6d9012ae9e"; + sha512 = "nOqH59deCq9SRHlxq1Aw85Jnt4w6KvLKqWVik6oA9ZklXLNIOlqg4F2yrT1MVaTjAqvVwdfeZ7w7aCvJD7ugkw=="; }; } { @@ -3518,7 +3534,7 @@ path = fetchurl { name = "string_width___string_width_3.1.0.tgz"; url = "https://registry.yarnpkg.com/string-width/-/string-width-3.1.0.tgz"; - sha1 = "22767be21b62af1081574306f69ac51b62203961"; + sha512 = "vafcv6KjVZKSgz06oM/H6GDBrAtz8vdhQakGjFIvNrHA6y3HCF1CInLy+QLq8dTJPQ1b+KDUqDFctkdRW44e1w=="; }; } { @@ -3526,7 +3542,7 @@ path = fetchurl { name = "string.prototype.matchall___string.prototype.matchall_4.0.2.tgz"; url = "https://registry.yarnpkg.com/string.prototype.matchall/-/string.prototype.matchall-4.0.2.tgz"; - sha1 = "48bb510326fb9fdeb6a33ceaa81a6ea04ef7648e"; + sha512 = "N/jp6O5fMf9os0JU3E72Qhf590RSRZU/ungsL/qJUYVTNv7hTG0P/dbPjxINVN9jpscu3nzYwKESU3P3RY5tOg=="; }; } { @@ -3534,7 +3550,7 @@ path = fetchurl { name = "string.prototype.trimend___string.prototype.trimend_1.0.1.tgz"; url = "https://registry.yarnpkg.com/string.prototype.trimend/-/string.prototype.trimend-1.0.1.tgz"; - sha1 = "85812a6b847ac002270f5808146064c995fb6913"; + sha512 = "LRPxFUaTtpqYsTeNKaFOw3R4bxIzWOnbQ837QfBylo8jIxtcbK/A/sMV7Q+OAV/vWo+7s25pOE10KYSjaSO06g=="; }; } { @@ -3542,7 +3558,7 @@ path = fetchurl { name = "string.prototype.trimleft___string.prototype.trimleft_2.1.2.tgz"; url = "https://registry.yarnpkg.com/string.prototype.trimleft/-/string.prototype.trimleft-2.1.2.tgz"; - sha1 = "4408aa2e5d6ddd0c9a80739b087fbc067c03b3cc"; + sha512 = "gCA0tza1JBvqr3bfAIFJGqfdRTyPae82+KTnm3coDXkZN9wnuW3HjGgN386D7hfv5CHQYCI022/rJPVlqXyHSw=="; }; } { @@ -3550,7 +3566,7 @@ path = fetchurl { name = "string.prototype.trimright___string.prototype.trimright_2.1.2.tgz"; url = "https://registry.yarnpkg.com/string.prototype.trimright/-/string.prototype.trimright-2.1.2.tgz"; - sha1 = "c76f1cef30f21bbad8afeb8db1511496cfb0f2a3"; + sha512 = "ZNRQ7sY3KroTaYjRS6EbNiiHrOkjihL9aQE/8gfQ4DtAC/aEBRHFJa44OmoWxGGqXuJlfKkZW4WcXErGr+9ZFg=="; }; } { @@ -3558,7 +3574,7 @@ path = fetchurl { name = "string.prototype.trimstart___string.prototype.trimstart_1.0.1.tgz"; url = "https://registry.yarnpkg.com/string.prototype.trimstart/-/string.prototype.trimstart-1.0.1.tgz"; - sha1 = "14af6d9f34b053f7cfc89b72f8f2ee14b9039a54"; + sha512 = "XxZn+QpvrBI1FOcg6dIpxUPgWCPuNXvMD72aaRaUQv1eD4e/Qy8i/hFTe0BUmD60p/QA6bh1avmuPTfNjqVWRw=="; }; } { @@ -3566,7 +3582,7 @@ path = fetchurl { name = "string_decoder___string_decoder_1.1.1.tgz"; url = "https://registry.yarnpkg.com/string_decoder/-/string_decoder-1.1.1.tgz"; - sha1 = "9cf1611ba62685d7030ae9e4ba34149c3af03fc8"; + sha512 = "n/ShnvDi6FHbbVfviro+WojiFzv+s8MPMHBczVePfUpDJLwoLT0ht1l4YwBCbi8pJAveEEdnkHyPyTP/mzRfwg=="; }; } { @@ -3574,7 +3590,7 @@ path = fetchurl { name = "stringify_object___stringify_object_3.3.0.tgz"; url = "https://registry.yarnpkg.com/stringify-object/-/stringify-object-3.3.0.tgz"; - sha1 = "703065aefca19300d3ce88af4f5b3956d7556629"; + sha512 = "rHqiFh1elqCQ9WPLIC8I0Q/g/wj5J1eMkyoiD6eoQApWHP0FtlK7rqnhmabL5VUY9JQCcqwwvlOaSuutekgyrw=="; }; } { @@ -3582,7 +3598,7 @@ path = fetchurl { name = "strip_ansi___strip_ansi_3.0.1.tgz"; url = "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-3.0.1.tgz"; - sha1 = "6a385fb8853d952d5ff05d0e8aaf94278dc63dcf"; + sha1 = "ajhfuIU9lS1f8F0Oiq+UJ43GPc8="; }; } { @@ -3590,7 +3606,7 @@ path = fetchurl { name = "strip_ansi___strip_ansi_4.0.0.tgz"; url = "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-4.0.0.tgz"; - sha1 = "a8479022eb1ac368a871389b635262c505ee368f"; + sha1 = "qEeQIusaw2iocTibY1JixQXuNo8="; }; } { @@ -3598,7 +3614,7 @@ path = fetchurl { name = "strip_ansi___strip_ansi_5.2.0.tgz"; url = "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-5.2.0.tgz"; - sha1 = "8c9a536feb6afc962bdfa5b104a5091c1ad9c0ae"; + sha512 = "DuRs1gKbBqsMKIZlrffwlug8MHkcnpjs5VPmL1PAh+mA30U0DTotfDZ0d2UUsXpPmPmMMJ6W773MaA3J+lbiWA=="; }; } { @@ -3606,7 +3622,7 @@ path = fetchurl { name = "strip_bom___strip_bom_3.0.0.tgz"; url = "https://registry.yarnpkg.com/strip-bom/-/strip-bom-3.0.0.tgz"; - sha1 = "2334c18e9c759f7bdd56fdef7e9ae3d588e68ed3"; + sha1 = "IzTBjpx1n3vdVv3vfprj1YjmjtM="; }; } { @@ -3614,7 +3630,7 @@ path = fetchurl { name = "strip_eof___strip_eof_1.0.0.tgz"; url = "https://registry.yarnpkg.com/strip-eof/-/strip-eof-1.0.0.tgz"; - sha1 = "bb43ff5598a6eb05d89b59fcd129c983313606bf"; + sha1 = "u0P/VZim6wXYm1n80SnJgzE2Br8="; }; } { @@ -3622,7 +3638,7 @@ path = fetchurl { name = "strip_json_comments___strip_json_comments_2.0.1.tgz"; url = "https://registry.yarnpkg.com/strip-json-comments/-/strip-json-comments-2.0.1.tgz"; - sha1 = "3c531942e908c2697c0ec344858c286c7ca0a60a"; + sha1 = "PFMZQukIwml8DsNEhYwobHygpgo="; }; } { @@ -3630,7 +3646,7 @@ path = fetchurl { name = "supports_color___supports_color_2.0.0.tgz"; url = "https://registry.yarnpkg.com/supports-color/-/supports-color-2.0.0.tgz"; - sha1 = "535d045ce6b6363fa40117084629995e9df324c7"; + sha1 = "U10EXOa2Nj+kARcIRimZXp3zJMc="; }; } { @@ -3638,7 +3654,7 @@ path = fetchurl { name = "supports_color___supports_color_4.5.0.tgz"; url = "https://registry.yarnpkg.com/supports-color/-/supports-color-4.5.0.tgz"; - sha1 = "be7a0de484dec5c5cddf8b3d59125044912f635b"; + sha1 = "vnoN5ITexcXN34s9WRJQRJEvY1s="; }; } { @@ -3646,7 +3662,7 @@ path = fetchurl { name = "supports_color___supports_color_5.5.0.tgz"; url = "https://registry.yarnpkg.com/supports-color/-/supports-color-5.5.0.tgz"; - sha1 = "e2e69a44ac8772f78a1ec0b35b689df6530efc8f"; + sha512 = "QjVjwdXIt408MIiAqCX4oUKsgU2EqAGzs2Ppkm4aQYbjm+ZEWEcW4SfFNTr4uMNZma0ey4f5lgLrkB0aX0QMow=="; }; } { @@ -3654,7 +3670,7 @@ path = fetchurl { name = "symbol_observable___symbol_observable_1.0.1.tgz"; url = "https://registry.yarnpkg.com/symbol-observable/-/symbol-observable-1.0.1.tgz"; - sha1 = "8340fc4702c3122df5d22288f88283f513d3fdd4"; + sha1 = "g0D8RwLDEi310iKI+IKD9RPT/dQ="; }; } { @@ -3662,7 +3678,7 @@ path = fetchurl { name = "symbol_observable___symbol_observable_1.2.0.tgz"; url = "https://registry.yarnpkg.com/symbol-observable/-/symbol-observable-1.2.0.tgz"; - sha1 = "c22688aed4eab3cdc2dfeacbb561660560a00804"; + sha512 = "e900nM8RRtGhlV36KGEU9k65K3mPb1WV70OdjfxlG2EAuM1noi/E/BaW/uMhL7bPEssK8QV57vN3esixjUvcXQ=="; }; } { @@ -3670,7 +3686,7 @@ path = fetchurl { name = "synchronous_promise___synchronous_promise_2.0.12.tgz"; url = "https://registry.yarnpkg.com/synchronous-promise/-/synchronous-promise-2.0.12.tgz"; - sha1 = "219934f23c19c9aa716276cf2e1f8d4e5b04d07f"; + sha512 = "rIDJiHmIK02tXU+eW1v6a7rNIIiMLm5JUF5Uj2fT6oLSulg7WNDVoqvkYqkFoJzf4v2gmTLppvzegdo9R+7h1Q=="; }; } { @@ -3678,7 +3694,7 @@ path = fetchurl { name = "table___table_4.0.2.tgz"; url = "https://registry.yarnpkg.com/table/-/table-4.0.2.tgz"; - sha1 = "a33447375391e766ad34d3486e6e2aedc84d2e36"; + sha512 = "UUkEAPdSGxtRpiV9ozJ5cMTtYiqz7Ni1OGqLXRCynrvzdtR1p+cfOWe2RJLwvUG8hNanaSRjecIqwOjqeatDsA=="; }; } { @@ -3686,7 +3702,7 @@ path = fetchurl { name = "table___table_5.4.6.tgz"; url = "https://registry.yarnpkg.com/table/-/table-5.4.6.tgz"; - sha1 = "1292d19500ce3f86053b05f0e8e7e4a3bb21079e"; + sha512 = "wmEc8m4fjnob4gt5riFRtTu/6+4rSe12TpAELNSqHMfF3IqnA+CH37USM6/YR3qRZv7e56kAEAtd6nKZaxe0Ug=="; }; } { @@ -3694,7 +3710,7 @@ path = fetchurl { name = "text_table___text_table_0.2.0.tgz"; url = "https://registry.yarnpkg.com/text-table/-/text-table-0.2.0.tgz"; - sha1 = "7f5ee823ae805207c00af2df4a84ec3fcfa570b4"; + sha1 = "f17oI66AUgfACvLfSoTsP8+lcLQ="; }; } { @@ -3702,7 +3718,7 @@ path = fetchurl { name = "through___through_2.3.8.tgz"; url = "https://registry.yarnpkg.com/through/-/through-2.3.8.tgz"; - sha1 = "0dd4c9ffaabc357960b1b724115d7e0e86a2e1f5"; + sha1 = "DdTJ/6q8NXlgsbckEV1+Doai4fU="; }; } { @@ -3710,7 +3726,7 @@ path = fetchurl { name = "tmp___tmp_0.0.33.tgz"; url = "https://registry.yarnpkg.com/tmp/-/tmp-0.0.33.tgz"; - sha1 = "6d34335889768d21b2bcda0aa277ced3b1bfadf9"; + sha512 = "jRCJlojKnZ3addtTOjdIqoRuPEKBvNXcGYqzO6zWZX8KfKEpnGY5jfggJQ3EjKuu8D4bJRr0y+cYJFmYbImXGw=="; }; } { @@ -3718,7 +3734,7 @@ path = fetchurl { name = "to_fast_properties___to_fast_properties_2.0.0.tgz"; url = "https://registry.yarnpkg.com/to-fast-properties/-/to-fast-properties-2.0.0.tgz"; - sha1 = "dc5e698cbd079265bc73e0377681a4e4e83f616e"; + sha1 = "3F5pjL0HkmW8c+A3doGk5Og/YW4="; }; } { @@ -3726,7 +3742,7 @@ path = fetchurl { name = "to_object_path___to_object_path_0.3.0.tgz"; url = "https://registry.yarnpkg.com/to-object-path/-/to-object-path-0.3.0.tgz"; - sha1 = "297588b7b0e7e0ac08e04e672f85c1f4999e17af"; + sha1 = "KXWIt7Dn4KwI4E5nL4XB9JmeF68="; }; } { @@ -3734,7 +3750,7 @@ path = fetchurl { name = "to_regex_range___to_regex_range_2.1.1.tgz"; url = "https://registry.yarnpkg.com/to-regex-range/-/to-regex-range-2.1.1.tgz"; - sha1 = "7c80c17b9dfebe599e27367e0d4dd5590141db38"; + sha1 = "fIDBe53+vlmeJzZ+DU3VWQFB2zg="; }; } { @@ -3742,7 +3758,7 @@ path = fetchurl { name = "to_regex___to_regex_3.0.2.tgz"; url = "https://registry.yarnpkg.com/to-regex/-/to-regex-3.0.2.tgz"; - sha1 = "13cfdd9b336552f30b51f33a8ae1b42a7a7599ce"; + sha512 = "FWtleNAtZ/Ki2qtqej2CXTOayOH9bHDQF+Q48VpWyDXjbYxA4Yz8iDB31zXOBUlOHHKidDbqGVrTUvQMPmBGBw=="; }; } { @@ -3750,7 +3766,7 @@ path = fetchurl { name = "toposort___toposort_2.0.2.tgz"; url = "https://registry.yarnpkg.com/toposort/-/toposort-2.0.2.tgz"; - sha1 = "ae21768175d1559d48bef35420b2f4962f09c330"; + sha1 = "riF2gXXRVZ1IvvNUILL0li8JwzA="; }; } { @@ -3758,7 +3774,7 @@ path = fetchurl { name = "tslib___tslib_1.13.0.tgz"; url = "https://registry.yarnpkg.com/tslib/-/tslib-1.13.0.tgz"; - sha1 = "c881e13cc7015894ed914862d276436fa9a47043"; + sha512 = "i/6DQjL8Xf3be4K/E6Wgpekn5Qasl1usyw++dAA35Ue5orEn65VIxOA+YvNNl9HV3qv70T7CNwjODHZrLwvd1Q=="; }; } { @@ -3766,7 +3782,7 @@ path = fetchurl { name = "type_check___type_check_0.3.2.tgz"; url = "https://registry.yarnpkg.com/type-check/-/type-check-0.3.2.tgz"; - sha1 = "5884cab512cf1d355e3fb784f30804b2b520db72"; + sha1 = "WITKtRLPHTVeP7eE8wgEsrUg23I="; }; } { @@ -3774,7 +3790,7 @@ path = fetchurl { name = "typedarray___typedarray_0.0.6.tgz"; url = "https://registry.yarnpkg.com/typedarray/-/typedarray-0.0.6.tgz"; - sha1 = "867ac74e3864187b1d3d47d996a78ec5c8830777"; + sha1 = "hnrHTjhkGHsdPUfZlqeOxciDB3c="; }; } { @@ -3782,7 +3798,7 @@ path = fetchurl { name = "typescript_eslint_parser___typescript_eslint_parser_16.0.1.tgz"; url = "https://registry.yarnpkg.com/typescript-eslint-parser/-/typescript-eslint-parser-16.0.1.tgz"; - sha1 = "b40681c7043b222b9772748b700a000b241c031b"; + sha512 = "IKawLTu4A2xN3aN/cPLxvZ0bhxZHILGDKTZWvWNJ3sLNhJ3PjfMEDQmR2VMpdRPrmWOadgWXRwjLBzSA8AGsaQ=="; }; } { @@ -3790,7 +3806,7 @@ path = fetchurl { name = "typescript___typescript_2.9.2.tgz"; url = "https://registry.yarnpkg.com/typescript/-/typescript-2.9.2.tgz"; - sha1 = "1cbf61d05d6b96269244eb6a3bce4bd914e0f00c"; + sha512 = "Gr4p6nFNaoufRIY4NMdpQRNmgxVIGMs4Fcu/ujdYk3nAZqk7supzBE9idmvfZIlH/Cuj//dvi+019qEue9lV0w=="; }; } { @@ -3798,7 +3814,7 @@ path = fetchurl { name = "union_value___union_value_1.0.1.tgz"; url = "https://registry.yarnpkg.com/union-value/-/union-value-1.0.1.tgz"; - sha1 = "0b6fe7b835aecda61c6ea4d4f02c14221e109847"; + sha512 = "tJfXmxMeWYnczCVs7XAEvIV7ieppALdyepWMkHkwciRpZraG/xwT+s2JN8+pr1+8jCRf80FFzvr+MpQeeoF4Xg=="; }; } { @@ -3806,7 +3822,7 @@ path = fetchurl { name = "unset_value___unset_value_1.0.0.tgz"; url = "https://registry.yarnpkg.com/unset-value/-/unset-value-1.0.0.tgz"; - sha1 = "8376873f7d2335179ffb1e6fc3a8ed0dfc8ab559"; + sha1 = "g3aHP30jNRef+x5vw6jtDfyKtVk="; }; } { @@ -3814,7 +3830,7 @@ path = fetchurl { name = "uri_js___uri_js_4.2.2.tgz"; url = "https://registry.yarnpkg.com/uri-js/-/uri-js-4.2.2.tgz"; - sha1 = "94c540e1ff772956e2299507c010aea6c8838eb0"; + sha512 = "KY9Frmirql91X2Qgjry0Wd4Y+YTdrdZheS8TFwvkbLWf/G5KNJDCh6pKL5OZctEW4+0Baa5idK2ZQuELRwPznQ=="; }; } { @@ -3822,7 +3838,7 @@ path = fetchurl { name = "urix___urix_0.1.0.tgz"; url = "https://registry.yarnpkg.com/urix/-/urix-0.1.0.tgz"; - sha1 = "da937f7a62e21fec1fd18d49b35c2935067a6c72"; + sha1 = "2pN/emLiH+wf0Y1Js1wpNQZ6bHI="; }; } { @@ -3830,7 +3846,7 @@ path = fetchurl { name = "use___use_3.1.1.tgz"; url = "https://registry.yarnpkg.com/use/-/use-3.1.1.tgz"; - sha1 = "d50c8cac79a19fbc20f2911f56eb973f4e10070f"; + sha512 = "cwESVXlO3url9YWlFW/TA9cshCEhtu7IKJ/p5soJ/gGpj7vbvFrAY/eIioQ6Dw23KjZhYgiIo8HOs1nQ2vr/oQ=="; }; } { @@ -3838,7 +3854,7 @@ path = fetchurl { name = "util_deprecate___util_deprecate_1.0.2.tgz"; url = "https://registry.yarnpkg.com/util-deprecate/-/util-deprecate-1.0.2.tgz"; - sha1 = "450d4dc9fa70de732762fbd2d4a28981419a0ccf"; + sha1 = "RQ1Nyfpw3nMnYvvS1KKJgUGaDM8="; }; } { @@ -3846,7 +3862,7 @@ path = fetchurl { name = "validate_npm_package_license___validate_npm_package_license_3.0.4.tgz"; url = "https://registry.yarnpkg.com/validate-npm-package-license/-/validate-npm-package-license-3.0.4.tgz"; - sha1 = "fc91f6b9c7ba15c857f4cb2c5defeec39d4f410a"; + sha512 = "DpKm2Ui/xN7/HQKCtpZxoRWBhZ9Z0kqtygG8XCgNQ8ZlDnxuQmWhj566j8fN4Cu3/JmbhsDo7fcAJq4s9h27Ew=="; }; } { @@ -3854,7 +3870,7 @@ path = fetchurl { name = "vue_eslint_parser___vue_eslint_parser_2.0.3.tgz"; url = "https://registry.yarnpkg.com/vue-eslint-parser/-/vue-eslint-parser-2.0.3.tgz"; - sha1 = "c268c96c6d94cfe3d938a5f7593959b0ca3360d1"; + sha512 = "ZezcU71Owm84xVF6gfurBQUGg8WQ+WZGxgDEQu1IHFBZNx7BFZg3L1yHxrCBNNwbwFtE1GuvfJKMtb6Xuwc/Bw=="; }; } { @@ -3862,7 +3878,7 @@ path = fetchurl { name = "which_module___which_module_2.0.0.tgz"; url = "https://registry.yarnpkg.com/which-module/-/which-module-2.0.0.tgz"; - sha1 = "d9ef07dce77b9902b8a3a8fa4b31c3e3f7e6e87a"; + sha1 = "2e8H3Od7mQK4o6j6SzHD4/fm6Ho="; }; } { @@ -3870,7 +3886,7 @@ path = fetchurl { name = "which___which_1.3.1.tgz"; url = "https://registry.yarnpkg.com/which/-/which-1.3.1.tgz"; - sha1 = "a45043d54f5805316da8d62f9f50918d3da70b0a"; + sha512 = "HxJdYWq1MTIQbJ3nw0cqssHoTNU267KlrDuGZ1WYlxDStUtKUhOaJmh112/TZmHxxUfuJqPXSOm7tDyas0OSIQ=="; }; } { @@ -3878,7 +3894,7 @@ path = fetchurl { name = "word_wrap___word_wrap_1.2.3.tgz"; url = "https://registry.yarnpkg.com/word-wrap/-/word-wrap-1.2.3.tgz"; - sha1 = "610636f6b1f703891bd34771ccb17fb93b47079c"; + sha512 = "Hz/mrNwitNRh/HUAtM/VT/5VH+ygD6DV7mYKZAtHOrbs8U7lvPS6xf7EJKMF0uW1KJCl0H701g3ZGus+muE5vQ=="; }; } { @@ -3886,7 +3902,7 @@ path = fetchurl { name = "wrap_ansi___wrap_ansi_2.1.0.tgz"; url = "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-2.1.0.tgz"; - sha1 = "d8fc3d284dd05794fe84973caecdd1cf824fdd85"; + sha1 = "2Pw9KE3QV5T+hJc8rs3Rz4JP3YU="; }; } { @@ -3894,7 +3910,7 @@ path = fetchurl { name = "wrap_ansi___wrap_ansi_3.0.1.tgz"; url = "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-3.0.1.tgz"; - sha1 = "288a04d87eda5c286e060dfe8f135ce8d007f8ba"; + sha1 = "KIoE2H7aXChuBg3+jxNc6NAH+Lo="; }; } { @@ -3902,7 +3918,7 @@ path = fetchurl { name = "wrappy___wrappy_1.0.2.tgz"; url = "https://registry.yarnpkg.com/wrappy/-/wrappy-1.0.2.tgz"; - sha1 = "b5243d8f3ec1aa35f1364605bc0d1036e30ab69f"; + sha1 = "tSQ9jz7BqjXxNkYFvA0QNuMKtp8="; }; } { @@ -3910,7 +3926,7 @@ path = fetchurl { name = "write___write_1.0.3.tgz"; url = "https://registry.yarnpkg.com/write/-/write-1.0.3.tgz"; - sha1 = "0800e14523b923a387e415123c865616aae0f5c3"; + sha512 = "/lg70HAjtkUgWPVZhZcm+T4hkL8Zbtp1nFNOn3lRrxnlv50SRBv7cR7RqR+GMsd3hUXy9hWBo4CHTbFTcOYwig=="; }; } { @@ -3918,7 +3934,7 @@ path = fetchurl { name = "write___write_0.2.1.tgz"; url = "https://registry.yarnpkg.com/write/-/write-0.2.1.tgz"; - sha1 = "5fc03828e264cea3fe91455476f7a3c566cb0757"; + sha1 = "X8A4KOJkzqP+kUVUdvejxWbLB1c="; }; } { @@ -3926,7 +3942,7 @@ path = fetchurl { name = "xregexp___xregexp_4.3.0.tgz"; url = "https://registry.yarnpkg.com/xregexp/-/xregexp-4.3.0.tgz"; - sha1 = "7e92e73d9174a99a59743f67a4ce879a04b5ae50"; + sha512 = "7jXDIFXh5yJ/orPn4SXjuVrWWoi4Cr8jfV1eHv9CixKSbU+jY4mxfrBwAuDvupPNKpMUY+FeIqsVw/JLT9+B8g=="; }; } { @@ -3934,7 +3950,7 @@ path = fetchurl { name = "y18n___y18n_3.2.1.tgz"; url = "https://registry.yarnpkg.com/y18n/-/y18n-3.2.1.tgz"; - sha1 = "6d15fba884c08679c0d77e88e7759e811e07fa41"; + sha1 = "bRX7qITAhnnA136I53WegR4H+kE="; }; } { @@ -3942,7 +3958,15 @@ path = fetchurl { name = "yallist___yallist_2.1.2.tgz"; url = "https://registry.yarnpkg.com/yallist/-/yallist-2.1.2.tgz"; - sha1 = "1c11f9218f076089a47dd512f93c6699a6a81d52"; + sha1 = "HBH5IY8HYImkfdUS+TxmmaaoHVI="; + }; + } + { + name = "yallist___yallist_4.0.0.tgz"; + path = fetchurl { + name = "yallist___yallist_4.0.0.tgz"; + url = "https://registry.yarnpkg.com/yallist/-/yallist-4.0.0.tgz"; + sha512 = "3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A=="; }; } { @@ -3950,7 +3974,7 @@ path = fetchurl { name = "yargs_parser___yargs_parser_8.1.0.tgz"; url = "https://registry.yarnpkg.com/yargs-parser/-/yargs-parser-8.1.0.tgz"; - sha1 = "f1376a33b6629a5d063782944da732631e966950"; + sha512 = "yP+6QqN8BmrgW2ggLtTbdrOyBNSI7zBa4IykmiV5R1wl1JWNxQvWhMfMdmzIYtKU7oP3OOInY/tl2ov3BDjnJQ=="; }; } { @@ -3958,7 +3982,7 @@ path = fetchurl { name = "yargs___yargs_10.0.3.tgz"; url = "https://registry.yarnpkg.com/yargs/-/yargs-10.0.3.tgz"; - sha1 = "6542debd9080ad517ec5048fb454efe9e4d4aaae"; + sha512 = "DqBpQ8NAUX4GyPP/ijDGHsJya4tYqLQrjPr95HNsr1YwL3+daCfvBwg7+gIC6IdJhR2kATh3hb61vjzMWEtjdw=="; }; } { @@ -3966,7 +3990,7 @@ path = fetchurl { name = "yup___yup_0.27.0.tgz"; url = "https://registry.yarnpkg.com/yup/-/yup-0.27.0.tgz"; - sha1 = "f8cb198c8e7dd2124beddc2457571329096b06e7"; + sha512 = "v1yFnE4+u9za42gG/b/081E7uNW9mUj3qtkmelLbW5YPROZzSH/KUUyJu9Wt8vxFJcT9otL/eZopS0YK1L5yPQ=="; }; } ]; diff --git a/third_party/nixpkgs/pkgs/development/tools/yq-go/default.nix b/third_party/nixpkgs/pkgs/development/tools/yq-go/default.nix index 61e5d10b0c..e07899633d 100644 --- a/third_party/nixpkgs/pkgs/development/tools/yq-go/default.nix +++ b/third_party/nixpkgs/pkgs/development/tools/yq-go/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "yq-go"; - version = "4.30.5"; + version = "4.30.6"; src = fetchFromGitHub { owner = "mikefarah"; repo = "yq"; rev = "v${version}"; - sha256 = "sha256-+OMBDWiQXCPVTjE8FhzfVRCyGJ0cEw7TVhcoS4yW/50="; + sha256 = "sha256-2vG5rdrvpRV7yZtAKnwTQ9+s6Ddz3DrxCY7HhQ6LegU="; }; - vendorSha256 = "sha256-L3l6wH4bR1/R6MtQTHYsyRE5E/EPnpNwa310zUONo+s="; + vendorSha256 = "sha256-s1c4E5bPal1YWCFIHy5CQSpGNbfM5lx2/Ri5linpTiw="; nativeBuildInputs = [ installShellFiles ]; diff --git a/third_party/nixpkgs/pkgs/development/web/bun/default.nix b/third_party/nixpkgs/pkgs/development/web/bun/default.nix index 815351d482..817e32e492 100644 --- a/third_party/nixpkgs/pkgs/development/web/bun/default.nix +++ b/third_party/nixpkgs/pkgs/development/web/bun/default.nix @@ -12,7 +12,7 @@ }: stdenvNoCC.mkDerivation rec { - version = "0.3.0"; + version = "0.4.0"; pname = "bun"; src = passthru.sources.${stdenvNoCC.hostPlatform.system} or (throw "Unsupported system: ${stdenvNoCC.hostPlatform.system}"); @@ -33,19 +33,19 @@ stdenvNoCC.mkDerivation rec { sources = { "aarch64-darwin" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-darwin-aarch64.zip"; - sha256 = "CPoSo8Kqu87c0bF4J2KSoamz6bsfS/DnkYqRi+XL8Qw="; + sha256 = "T+vxwYM0zc1HsPiBncZolIquglKThsx2RDOS3/jPn4s="; }; "aarch64-linux" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-linux-aarch64.zip"; - sha256 = "0ymZ4cYJn3Qth4jiTeXuAAsY0wFrYO2OHumY5WLamME="; + sha256 = "AEo4xXnePlQYTXepwSDUaG8NczPdTCbPGPzxgH+/HHo="; }; "x86_64-darwin" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-darwin-x64.zip"; - sha256 = "8f5w+wu1vId0R7UQsdbi/yopw1R00lR9ibEAOYwUglI="; + sha256 = "w66xgmVepmC543apTTGLfeV3FMsLiiUpfqzzRhpaNy8="; }; "x86_64-linux" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-linux-x64.zip"; - sha256 = "bnuz+n8pAhBUgQKImCUKRZCwIqGHHaB3KtZOVfqy4Zw="; + sha256 = "LMutdGNiGp4aLmeqMLk8Pc0xIjqgWPO6GSli1EfTgkY="; }; }; updateScript = writeShellScript "update-bun" '' diff --git a/third_party/nixpkgs/pkgs/development/web/flyctl/default.nix b/third_party/nixpkgs/pkgs/development/web/flyctl/default.nix index 35d1aff01d..406f9c2a45 100644 --- a/third_party/nixpkgs/pkgs/development/web/flyctl/default.nix +++ b/third_party/nixpkgs/pkgs/development/web/flyctl/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "flyctl"; - version = "0.0.440"; + version = "0.0.441"; src = fetchFromGitHub { owner = "superfly"; repo = "flyctl"; rev = "v${version}"; - sha256 = "sha256-pqly/5QEwKTp9wdh+Tq4KhOFmSD1TLodamo64e13o/s="; + sha256 = "sha256-T69OGS9w0furVOABvctzCxSgUJpwppWRFCmOlWzgagE="; }; vendorSha256 = "sha256-yVR3pUsveZf4052hr6aO4fnvEOQyHdm3N7khcobcoyE="; diff --git a/third_party/nixpkgs/pkgs/games/BeatSaberModManager/default.nix b/third_party/nixpkgs/pkgs/games/BeatSaberModManager/default.nix index eec57d7cf0..ceef75f458 100644 --- a/third_party/nixpkgs/pkgs/games/BeatSaberModManager/default.nix +++ b/third_party/nixpkgs/pkgs/games/BeatSaberModManager/default.nix @@ -7,6 +7,8 @@ buildDotnetModule, fetchFromGitHub, + dotnetCorePackages, + libX11, libICE, libSM, @@ -15,13 +17,13 @@ buildDotnetModule rec { pname = "BeatSaberModManager"; - version = "0.0.2"; + version = "0.0.4"; src = fetchFromGitHub { owner = "affederaffe"; repo = pname; rev = "v${version}"; - sha256 = "sha256-6+9pWr8jJzs430Ai2ddh/2DK3C2bQA1e1+BNDrKhyzY="; + sha256 = "sha256-XeyOWg4Wa4hiorLPnbnBrLSjnxheAGGMPTqBleulDGw="; fetchSubmodules = true; # It vendors BSIPA-Linux }; @@ -32,10 +34,13 @@ buildDotnetModule rec { patches = [ (substituteAll { src = ./add-runtime-identifier.patch; - runtimeIdentifier = dotnet-sdk.passthru.systemToDotnetRid targetPlatform.system; + runtimeIdentifier = dotnetCorePackages.systemToDotnetRid targetPlatform.system; }) ]; + dotnet-sdk = dotnetCorePackages.sdk_7_0; + dotnet-runtime = dotnetCorePackages.runtime_7_0; + nugetDeps = ./deps.nix; runtimeDeps = [ diff --git a/third_party/nixpkgs/pkgs/games/BeatSaberModManager/deps.nix b/third_party/nixpkgs/pkgs/games/BeatSaberModManager/deps.nix index 8a0f34b7ca..57f7add09f 100644 --- a/third_party/nixpkgs/pkgs/games/BeatSaberModManager/deps.nix +++ b/third_party/nixpkgs/pkgs/games/BeatSaberModManager/deps.nix @@ -2,72 +2,120 @@ # Please dont edit it manually, your changes might get overwritten! { fetchNuGet }: [ - (fetchNuGet { pname = "Avalonia"; version = "0.10.16"; sha256 = "1197xyswinazahjd8mhfsrjszhcv4mdj48c56bmdlcsf6zbpravz"; }) + (fetchNuGet { pname = "Avalonia"; version = "11.0.0-preview4"; sha256 = "0s2ijp8fbny04c62gy8acg4n769hzj1pl9jml35bqrzk4m29jxs2"; }) (fetchNuGet { pname = "Avalonia.Angle.Windows.Natives"; version = "2.1.0.2020091801"; sha256 = "04jm83cz7vkhhr6n2c9hya2k8i2462xbf6np4bidk55as0jdq43a"; }) - (fetchNuGet { pname = "Avalonia.Controls.DataGrid"; version = "0.10.16"; sha256 = "1xlg7r9r77fc9bcjw3rnnknncny7mcnkin6nwhg0sig4ab6givd2"; }) - (fetchNuGet { pname = "Avalonia.Desktop"; version = "0.10.16"; sha256 = "09fg9j411kq0012wvix1bxiybif3pm1if624mwg4ng7w2z97dfl3"; }) - (fetchNuGet { pname = "Avalonia.FreeDesktop"; version = "0.10.16"; sha256 = "1rxcbsbszgyb77gxp4zvg9k1cxw40vbm1z04dn5dqp4bfam9gnnh"; }) - (fetchNuGet { pname = "Avalonia.Markup.Xaml.Loader"; version = "0.10.16"; sha256 = "10p93y3zr8aq8malahdllknk28afr0p2n7fz1c7hbhbkdpfjz01a"; }) - (fetchNuGet { pname = "Avalonia.Native"; version = "0.10.16"; sha256 = "1m6cgql12rkzxxzvyxd1d0f5z2k4myby6d90li5p3nhblswx6jpk"; 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+ in + writeShellScript "patch" '' + echo "making binaries executable" + chmod +x {veloren-voxygen,veloren-server-cli} + echo "patching dynamic linkers" + ${patchelf}/bin/patchelf \ + --set-interpreter "${stdenv.cc.bintools.dynamicLinker}" \ + veloren-server-cli + ${patchelf}/bin/patchelf \ + --set-interpreter "${stdenv.cc.bintools.dynamicLinker}" \ + --set-rpath "${lib.makeLibraryPath runtimeLibs}" \ + veloren-voxygen + ''; +in +rustPlatform.buildRustPackage { pname = "airshipper"; - version = "0.7.0"; + inherit version; src = fetchFromGitLab { owner = "Veloren"; repo = "airshipper"; rev = "v${version}"; - sha256 = "sha256-nOE9ZNHxLEAnMkuBSpxmeq3DxkRIlcoase6AxU+eFug="; + sha256 = "sha256-5zP1Ye1fJNQp8eWKwdxLqBr4qzBfWEEBsJ9s7+8idL4="; }; - patches = [ - # this *should* be merged in time for the release following 0.7.0 - (fetchpatch { - url = "https://github.com/veloren/Airshipper/commit/97fc986ab4cbf59f2c764f647710f19db86031b4.patch"; - hash = "sha256-Sg5et+yP6Z44wV/t9zqKLpg1C0cq6rV+3WrzAH4Za3U="; - }) - ]; - - cargoSha256 = "sha256-s3seKVEhXyOVlt3a8cubzRWoB4SVQpdCmq12y0FpDUw="; + cargoSha256 = "sha256-oksJYuuHdfP5mMQ+zYHH5SgD6YUK+zE3+AY90ZzHRUU="; buildInputs = [ openssl @@ -49,9 +77,11 @@ rustPlatform.buildRustPackage rec { ]; nativeBuildInputs = [ pkg-config makeWrapper ]; + RUSTC_BOOTSTRAP = 1; # We need rust unstable features + postInstall = '' install -Dm444 -t "$out/share/applications" "client/assets/net.veloren.airshipper.desktop" - install -Dm444 "client/assets/logo.ico" "$out/share/icons/net.veloren.airshipper.ico" + install -Dm444 "client/assets/net.veloren.airshipper.png" "$out/share/icons/net.veloren.airshipper.png" ''; postFixup = @@ -70,6 +100,7 @@ rustPlatform.buildRustPackage rec { in '' patchelf --set-rpath "${libPath}" "$out/bin/airshipper" + wrapProgram "$out/bin/airshipper" --set VELOREN_PATCHER "${patch}" ''; doCheck = false; diff --git a/third_party/nixpkgs/pkgs/games/cbonsai/default.nix b/third_party/nixpkgs/pkgs/games/cbonsai/default.nix index 30abbba93f..2dc131aba6 100644 --- a/third_party/nixpkgs/pkgs/games/cbonsai/default.nix +++ b/third_party/nixpkgs/pkgs/games/cbonsai/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { makeFlags = [ "CC=${stdenv.cc.targetPrefix}cc" ]; installFlags = [ "PREFIX=$(out)" ]; - passthru.updateScript = nix-update-script { attrPath = pname; }; + passthru.updateScript = nix-update-script { }; meta = with lib; { description = "Grow bonsai trees in your terminal"; diff --git a/third_party/nixpkgs/pkgs/games/factorio/versions.json b/third_party/nixpkgs/pkgs/games/factorio/versions.json index 9897495efe..629f184068 100644 --- a/third_party/nixpkgs/pkgs/games/factorio/versions.json +++ b/third_party/nixpkgs/pkgs/games/factorio/versions.json @@ -2,20 +2,20 @@ "x86_64-linux": { "alpha": { "experimental": { - "name": "factorio_alpha_x64-1.1.72.tar.xz", + "name": "factorio_alpha_x64-1.1.74.tar.xz", "needsAuth": true, - "sha256": "0hphx3jpmwwpyxyw4v4s7awy6vmcxi067sfl5j1ym5rdgsvr6n63", + "sha256": "0ygnqlw92gz2s2c4pdhb11lvh86d7byhw5l3qw1fjsx0xv3qnxrs", "tarDirectory": "x64", - "url": "https://factorio.com/get-download/1.1.72/alpha/linux64", - "version": "1.1.72" + "url": "https://factorio.com/get-download/1.1.74/alpha/linux64", + "version": "1.1.74" }, "stable": { - "name": "factorio_alpha_x64-1.1.72.tar.xz", + "name": "factorio_alpha_x64-1.1.74.tar.xz", "needsAuth": true, - "sha256": "0hphx3jpmwwpyxyw4v4s7awy6vmcxi067sfl5j1ym5rdgsvr6n63", + "sha256": "0ygnqlw92gz2s2c4pdhb11lvh86d7byhw5l3qw1fjsx0xv3qnxrs", "tarDirectory": "x64", - "url": "https://factorio.com/get-download/1.1.72/alpha/linux64", - "version": "1.1.72" + "url": "https://factorio.com/get-download/1.1.74/alpha/linux64", + "version": "1.1.74" } }, "demo": { @@ -38,20 +38,20 @@ }, "headless": { "experimental": { - "name": "factorio_headless_x64-1.1.72.tar.xz", + "name": "factorio_headless_x64-1.1.74.tar.xz", "needsAuth": false, - "sha256": "1jbckp2d1zp6kxsqax367vxc1970kbs9apm8sdv9bfn8majial6a", + "sha256": "1lqxprmai3vrm3hf9zdj9c9c6w05086nzn0vy88zy7xm2dgw7ylv", "tarDirectory": "x64", - "url": "https://factorio.com/get-download/1.1.72/headless/linux64", - "version": "1.1.72" + "url": "https://factorio.com/get-download/1.1.74/headless/linux64", + "version": "1.1.74" }, "stable": { - "name": "factorio_headless_x64-1.1.72.tar.xz", + "name": "factorio_headless_x64-1.1.74.tar.xz", "needsAuth": false, - "sha256": "1jbckp2d1zp6kxsqax367vxc1970kbs9apm8sdv9bfn8majial6a", + "sha256": "1lqxprmai3vrm3hf9zdj9c9c6w05086nzn0vy88zy7xm2dgw7ylv", "tarDirectory": "x64", - "url": "https://factorio.com/get-download/1.1.72/headless/linux64", - "version": "1.1.72" + "url": "https://factorio.com/get-download/1.1.74/headless/linux64", + "version": "1.1.74" } } } diff --git a/third_party/nixpkgs/pkgs/games/fheroes2/default.nix b/third_party/nixpkgs/pkgs/games/fheroes2/default.nix index 7d3123b3eb..e1b15b6248 100644 --- a/third_party/nixpkgs/pkgs/games/fheroes2/default.nix +++ b/third_party/nixpkgs/pkgs/games/fheroes2/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "fheroes2"; - version = "0.9.21"; + version = "1.0.0"; src = fetchFromGitHub { owner = "ihhub"; repo = "fheroes2"; rev = version; - sha256 = "sha256-b4OAuwMgVgZUdLWJp6Rv/+1X+rPcG7piIBk8SlEXoUY="; + sha256 = "sha256-86+4rFSvJ3xIVx+qDXZ65TSqIrPkbyoLNo1A+mFPdy8="; }; buildInputs = [ gettext glibcLocalesUtf8 libpng SDL2 SDL2_image SDL2_mixer SDL2_ttf zlib ]; diff --git a/third_party/nixpkgs/pkgs/games/freesweep/default.nix b/third_party/nixpkgs/pkgs/games/freesweep/default.nix index 7fe48d1baf..feba049a5c 100644 --- a/third_party/nixpkgs/pkgs/games/freesweep/default.nix +++ b/third_party/nixpkgs/pkgs/games/freesweep/default.nix @@ -1,5 +1,5 @@ -{ fetchFromGitHub, fetchpatch, ncurses, lib, stdenv, - updateAutotoolsGnuConfigScriptsHook }: +{ fetchFromGitHub, fetchpatch, ncurses, lib, stdenv +, updateAutotoolsGnuConfigScriptsHook, installShellFiles }: stdenv.mkDerivation rec { pname = "freesweep"; @@ -12,12 +12,10 @@ stdenv.mkDerivation rec { hash = "sha256-iuu81yHbNrjdPsimBrPK58PJ0d8i3ySM7rFUG/d8NJM"; }; - nativeBuildInputs = [ updateAutotoolsGnuConfigScriptsHook ]; + nativeBuildInputs = [ updateAutotoolsGnuConfigScriptsHook installShellFiles ]; buildInputs = [ ncurses ]; - preConfigure = '' - configureFlags="$configureFlags --with-prefsdir=$out/share" - ''; + configureFlags = [ "--with-prefsdir=$out/share" ]; enableParallelBuilding = true; @@ -25,7 +23,7 @@ stdenv.mkDerivation rec { runHook preInstall install -D -m 0555 freesweep $out/bin/freesweep install -D -m 0444 sweeprc $out/share/sweeprc - install -D -m 0444 freesweep.6 $out/share/man/man6/freesweep.6 + installManPage freesweep.6 runHook postInstall ''; diff --git a/third_party/nixpkgs/pkgs/games/gl-gsync-demo/default.nix b/third_party/nixpkgs/pkgs/games/gl-gsync-demo/default.nix index a4b30c572a..968d4d5e4a 100644 --- a/third_party/nixpkgs/pkgs/games/gl-gsync-demo/default.nix +++ b/third_party/nixpkgs/pkgs/games/gl-gsync-demo/default.nix @@ -27,7 +27,7 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ atemu ]; description = "A very basic OpenGL demo for testing NVIDIA's G-SYNC technology on Linux"; longDescription = '' - The demo simply draws a vertical bar moving accross the screen at constant speed, but deliberately rendered at a variable frame rate. + The demo simply draws a vertical bar moving across the screen at constant speed, but deliberately rendered at a variable frame rate. The min and max frame rates can be manually changed at runtime, by step of 10 fps and with a min of 10 fps. diff --git a/third_party/nixpkgs/pkgs/games/jumpy/default.nix b/third_party/nixpkgs/pkgs/games/jumpy/default.nix index 332db4a7a0..6d05cc4827 100644 --- a/third_party/nixpkgs/pkgs/games/jumpy/default.nix +++ b/third_party/nixpkgs/pkgs/games/jumpy/default.nix @@ -41,7 +41,6 @@ rustPlatform.buildRustPackage rec { xorg.libX11 xorg.libXcursor xorg.libXi - xorg.libXi xorg.libXrandr ] ++ lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Cocoa diff --git a/third_party/nixpkgs/pkgs/games/minecraft-servers/versions.json b/third_party/nixpkgs/pkgs/games/minecraft-servers/versions.json index 8dce87bb30..b0c4ca19a3 100644 --- a/third_party/nixpkgs/pkgs/games/minecraft-servers/versions.json +++ b/third_party/nixpkgs/pkgs/games/minecraft-servers/versions.json @@ -1,8 +1,8 @@ { "1.19": { - "url": "https://piston-data.mojang.com/v1/objects/f69c284232d7c7580bd89a5a4931c3581eae1378/server.jar", - "sha1": "f69c284232d7c7580bd89a5a4931c3581eae1378", - "version": "1.19.2", + "url": "https://piston-data.mojang.com/v1/objects/c9df48efed58511cdd0213c56b9013a7b5c9ac1f/server.jar", + "sha1": "c9df48efed58511cdd0213c56b9013a7b5c9ac1f", + "version": "1.19.3", "javaVersion": 17 }, "1.18": { diff --git a/third_party/nixpkgs/pkgs/games/nanosaur/default.nix b/third_party/nixpkgs/pkgs/games/nanosaur/default.nix index 4b25092752..c62fd3c5db 100644 --- a/third_party/nixpkgs/pkgs/games/nanosaur/default.nix +++ b/third_party/nixpkgs/pkgs/games/nanosaur/default.nix @@ -12,22 +12,31 @@ stdenv.mkDerivation rec { fetchSubmodules = true; }; - nativeBuildInputs = [ cmake makeWrapper ]; + nativeBuildInputs = [ + cmake + makeWrapper + ]; buildInputs = [ SDL2 ]; configurePhase = '' + runHook preConfigure cmake -S . -B build -DCMAKE_BUILD_TYPE=Release + runHook postConfigure ''; buildPhase = '' + runHook preBuild cmake --build build + runHook postBuild ''; installPhase = '' + runHook preInstall mv build $out makeWrapper $out/Nanosaur $out/bin/Nanosaur --chdir "$out" + runHook postInstall ''; meta = with lib; { @@ -38,9 +47,7 @@ stdenv.mkDerivation rec { And you get to shoot at T-Rexes with nukes. ''; homepage = "https://github.com/jorio/Nanosaur"; - license = with licenses; [ - cc-by-sa-40 - ]; + license = licenses.cc-by-sa-40; maintainers = with maintainers; [ lux ]; platforms = platforms.linux; }; diff --git a/third_party/nixpkgs/pkgs/games/nanosaur2/default.nix b/third_party/nixpkgs/pkgs/games/nanosaur2/default.nix new file mode 100644 index 0000000000..da0e6dbe72 --- /dev/null +++ b/third_party/nixpkgs/pkgs/games/nanosaur2/default.nix @@ -0,0 +1,54 @@ +{ lib, stdenv, fetchFromGitHub, SDL2, cmake, makeWrapper }: + +stdenv.mkDerivation rec { + pname = "nanosaur2"; + version = "2.1.0"; + + src = fetchFromGitHub { + owner = "jorio"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-UY+fyn8BA/HfCd2LCj5cfGmQACKUICH6CDCW4q6YDkg="; + fetchSubmodules = true; + }; + + nativeBuildInputs = [ + cmake + makeWrapper + ]; + buildInputs = [ + SDL2 + ]; + + configurePhase = '' + runHook preConfigure + cmake -S . -B build -DCMAKE_BUILD_TYPE=Release + runHook postConfigure + ''; + + buildPhase = '' + runHook preBuild + cmake --build build + runHook postBuild + ''; + + installPhase = '' + runHook preInstall + mv build $out + makeWrapper $out/Nanosaur2 $out/bin/Nanosaur2 --chdir "$out" + runHook postInstall + ''; + + meta = with lib; { + description = "A port of Nanosaur2, a 2004 Macintosh game by Pangea Software, for modern operating systems"; + longDescription = '' + Nanosaur is a 2004 Macintosh game by Pangea Software. + + Is a continuation of the original Nanosaur storyline, only this time you get to fly a pterodactyl who’s loaded with hi-tech weaponry. + ''; + homepage = "https://github.com/jorio/Nanosaur2"; + license = licenses.cc-by-sa-40; + maintainers = with maintainers; [ lux ]; + platforms = platforms.linux; + }; +} diff --git a/third_party/nixpkgs/pkgs/games/openra/default.nix b/third_party/nixpkgs/pkgs/games/openra/default.nix index d996630914..76454f69e4 100644 --- a/third_party/nixpkgs/pkgs/games/openra/default.nix +++ b/third_party/nixpkgs/pkgs/games/openra/default.nix @@ -13,7 +13,7 @@ with pkgs.lib; let /* Building an engine or out-of-tree mod is very similar, but different enough not to be able to build them with the same package definition, - so instaed we define what is common between them in a seperate file. + so instaed we define what is common between them in a separate file. Although `callPackage` could be used, it would require undoing `makeOverridable`, because `common.nix` does not define a package, but just an attribute set, diff --git a/third_party/nixpkgs/pkgs/games/openra/packages.nix b/third_party/nixpkgs/pkgs/games/openra/packages.nix index e98ebcaee4..5ee78fe2b8 100644 --- a/third_party/nixpkgs/pkgs/games/openra/packages.nix +++ b/third_party/nixpkgs/pkgs/games/openra/packages.nix @@ -3,7 +3,7 @@ pkgs: let /* Building an engine or out-of-tree mod is very similar, but different enough not to be able to build them with the same package definition, - so instaed we define what is common between them in a seperate file. + so instaed we define what is common between them in a separate file. Although `callPackage` could be used, it would require undoing `makeOverridable`, because `common.nix` does not define a package, but just an attribute set, diff --git a/third_party/nixpkgs/pkgs/games/openrct2/default.nix b/third_party/nixpkgs/pkgs/games/openrct2/default.nix index 04bf9d0c7f..d474b0eae9 100644 --- a/third_party/nixpkgs/pkgs/games/openrct2/default.nix +++ b/third_party/nixpkgs/pkgs/games/openrct2/default.nix @@ -26,25 +26,25 @@ }: let - openrct2-version = "0.4.2"; + openrct2-version = "0.4.3"; # Those versions MUST match the pinned versions within the CMakeLists.txt # file. The REPLAYS repository from the CMakeLists.txt is not necessary. - objects-version = "1.3.5"; + objects-version = "1.3.7"; title-sequences-version = "0.4.0"; openrct2-src = fetchFromGitHub { owner = "OpenRCT2"; repo = "OpenRCT2"; rev = "v${openrct2-version}"; - sha256 = "sha256-38syOFZm0eGCI1vbJxG8truX5vuafwSG0lp2o499zUs="; + sha256 = "sha256-TAe9b7uqdC8XzwDWZkyYKFV+Rn2AeR3MMBZ1lo9pRis="; }; objects-src = fetchFromGitHub { owner = "OpenRCT2"; repo = "objects"; rev = "v${objects-version}"; - sha256 = "sha256-S9fjgtb45vhRTWnYEgmIlKej5fGBtnhKOn35npmX70U="; + sha256 = "sha256-6c6bbXFi6iqmOOfqggXv3DyYgo4+eiPUIDnkKAAhX5s="; }; title-sequences-src = fetchFromGitHub { diff --git a/third_party/nixpkgs/pkgs/games/osu-lazer/default.nix b/third_party/nixpkgs/pkgs/games/osu-lazer/default.nix index cfcb69625d..f400c0e3e1 100644 --- a/third_party/nixpkgs/pkgs/games/osu-lazer/default.nix +++ b/third_party/nixpkgs/pkgs/games/osu-lazer/default.nix @@ -28,10 +28,6 @@ buildDotnetModule rec { nativeBuildInputs = [ copyDesktopItems ]; - dotnetFlags = [ - "--runtime linux-x64" - ]; - runtimeDeps = [ ffmpeg alsa-lib diff --git a/third_party/nixpkgs/pkgs/games/otto-matic/default.nix b/third_party/nixpkgs/pkgs/games/otto-matic/default.nix index 2257b50e0c..7523f2070e 100644 --- a/third_party/nixpkgs/pkgs/games/otto-matic/default.nix +++ b/third_party/nixpkgs/pkgs/games/otto-matic/default.nix @@ -35,9 +35,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "A port of Otto Matic, a 2001 Macintosh game by Pangea Software, for modern operating systems"; homepage = "https://github.com/jorio/OttoMatic"; - license = with licenses; [ - cc-by-sa-40 - ]; + license = licenses.cc-by-sa-40; maintainers = with maintainers; [ lux ]; platforms = platforms.linux; }; diff --git a/third_party/nixpkgs/pkgs/games/prismlauncher/default.nix b/third_party/nixpkgs/pkgs/games/prismlauncher/default.nix index 17fe569deb..7f6ba52dcc 100644 --- a/third_party/nixpkgs/pkgs/games/prismlauncher/default.nix +++ b/third_party/nixpkgs/pkgs/games/prismlauncher/default.nix @@ -3,7 +3,7 @@ , fetchFromGitHub , cmake , jdk8 -, jdk +, jdk17 , zlib , file , wrapQtAppsHook @@ -20,7 +20,7 @@ , tomlplusplus , ghc_filesystem , msaClientID ? "" -, jdks ? [ jdk jdk8 ] +, jdks ? [ jdk17 jdk8 ] }: let @@ -34,16 +34,16 @@ in stdenv.mkDerivation rec { pname = "prismlauncher"; - version = "6.0"; + version = "6.1"; src = fetchFromGitHub { owner = "PrismLauncher"; repo = "PrismLauncher"; rev = version; - sha256 = "sha256-Kwj1GvlT12jRcf84WMSnD4xkgGL3X9AVqdGDCxMmS4E="; + sha256 = "sha256-aIBaenSnssv0/r2+UT5R4nBwo2QBGZ1Zp0CWOeiaeDE="; }; - nativeBuildInputs = [ extra-cmake-modules cmake file jdk wrapQtAppsHook ]; + nativeBuildInputs = [ extra-cmake-modules cmake file jdk17 wrapQtAppsHook ]; buildInputs = [ qtbase qtsvg diff --git a/third_party/nixpkgs/pkgs/games/quakespasm/vulkan.nix b/third_party/nixpkgs/pkgs/games/quakespasm/vulkan.nix index cc6793d2c0..8b63b546cf 100644 --- a/third_party/nixpkgs/pkgs/games/quakespasm/vulkan.nix +++ b/third_party/nixpkgs/pkgs/games/quakespasm/vulkan.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "vkquake"; - version = "1.22.1"; + version = "1.22.3"; src = fetchFromGitHub { owner = "Novum"; repo = "vkQuake"; rev = version; - sha256 = "sha256-v0KLYAI9X1JYN7v8vpoAMWEHVMXytX72lOnJl2gJako="; + sha256 = "sha256-+8DU1QT3Lgqf1AIReVnXQ2Lq6R6eBb8VjdkJfAn/Rtc="; }; sourceRoot = "source/Quake"; diff --git a/third_party/nixpkgs/pkgs/games/scummvm/default.nix b/third_party/nixpkgs/pkgs/games/scummvm/default.nix index 9b989ac70e..440b30664d 100644 --- a/third_party/nixpkgs/pkgs/games/scummvm/default.nix +++ b/third_party/nixpkgs/pkgs/games/scummvm/default.nix @@ -1,15 +1,17 @@ -{ lib, stdenv, fetchurl, nasm -, alsa-lib, curl, flac, fluidsynth, freetype, libjpeg, libmad, libmpeg2, libogg, libvorbis, libGLU, libGL, SDL2, zlib +{ lib, stdenv, fetchFromGitHub, nasm +, alsa-lib, curl, flac, fluidsynth, freetype, libjpeg, libmad, libmpeg2, libogg, libtheora, libvorbis, libGLU, libGL, SDL2, zlib , Cocoa, AudioToolbox, Carbon, CoreMIDI, AudioUnit, cctools }: stdenv.mkDerivation rec { pname = "scummvm"; - version = "2.5.1"; + version = "2.6.1"; - src = fetchurl { - url = "http://scummvm.org/frs/scummvm/${version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-n9jbOORFYUS/jDTazffyBOdfGOjkSOwBzgjOgmoDXwE="; + src = fetchFromGitHub { + owner = "scummvm"; + repo = "scummvm"; + rev = "v${version}"; + hash = "sha256-fqMMdHBVcXLsBDWxXH9UKXwfvlyIVbRsIPmrYqPGQ+g="; }; nativeBuildInputs = [ nasm ]; @@ -19,7 +21,7 @@ stdenv.mkDerivation rec { ] ++ lib.optionals stdenv.isDarwin [ Cocoa AudioToolbox Carbon CoreMIDI AudioUnit ] ++ [ - curl freetype flac fluidsynth libjpeg libmad libmpeg2 libogg libvorbis libGLU libGL SDL2 zlib + curl freetype flac fluidsynth libjpeg libmad libmpeg2 libogg libtheora libvorbis libGLU libGL SDL2 zlib ]; dontDisableStatic = true; @@ -28,7 +30,6 @@ stdenv.mkDerivation rec { configurePlatforms = [ "host" ]; configureFlags = [ - "--enable-c++11" "--enable-release" ]; diff --git a/third_party/nixpkgs/pkgs/games/trackballs/default.nix b/third_party/nixpkgs/pkgs/games/trackballs/default.nix index 860c5a49ef..9ce9ad3ffc 100644 --- a/third_party/nixpkgs/pkgs/games/trackballs/default.nix +++ b/third_party/nixpkgs/pkgs/games/trackballs/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "trackballs"; - version = "1.3.3"; + version = "1.3.4"; src = fetchFromGitHub { owner = "trackballs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-fCoQqGXwcpcq/gl67XXY5/wEvCM0ZZTV8LhjC+tnRuo="; + sha256 = "sha256-JKSiNe5mu8rRztUhduGFY6IsSMx6VyBqKcGO5EssI+8="; }; nativeBuildInputs = [ cmake ]; diff --git a/third_party/nixpkgs/pkgs/games/vcmi/default.nix b/third_party/nixpkgs/pkgs/games/vcmi/default.nix index d16f3870d8..f38053a65a 100644 --- a/third_party/nixpkgs/pkgs/games/vcmi/default.nix +++ b/third_party/nixpkgs/pkgs/games/vcmi/default.nix @@ -24,14 +24,14 @@ stdenv.mkDerivation rec { pname = "vcmi"; - version = "1.0.0"; + version = "1.1.0"; src = fetchFromGitHub { owner = "vcmi"; repo = "vcmi"; rev = version; fetchSubmodules = true; - hash = "sha256-5PuFq6wDSj5Ye2fUjqcr/VRU0ocus6h2nn+myQTOrhU="; + hash = "sha256-Ah+aAuU2ioUfvtxfcSb4GNqriqY71ee5RhW2L9UMYFY="; }; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/games/xivlauncher/default.nix b/third_party/nixpkgs/pkgs/games/xivlauncher/default.nix index 0bd586d458..b8560f2b41 100644 --- a/third_party/nixpkgs/pkgs/games/xivlauncher/default.nix +++ b/third_party/nixpkgs/pkgs/games/xivlauncher/default.nix @@ -23,12 +23,8 @@ in nugetDeps = ./deps.nix; # File generated with `nix-build -A xivlauncher.passthru.fetch-deps` dotnetFlags = [ - "--runtime linux-x64" "-p:BuildHash=${rev}" - ]; - - dotnetBuildFlags = [ - "--no-self-contained" + "-p:PublishSingleFile=false" ]; postPatch = '' diff --git a/third_party/nixpkgs/pkgs/misc/cups/drivers/cups-pdf-to-pdf/default.nix b/third_party/nixpkgs/pkgs/misc/cups/drivers/cups-pdf-to-pdf/default.nix new file mode 100644 index 0000000000..a26216cbc7 --- /dev/null +++ b/third_party/nixpkgs/pkgs/misc/cups/drivers/cups-pdf-to-pdf/default.nix @@ -0,0 +1,62 @@ +{ lib +, stdenv +, fetchFromGitHub +, cups +, coreutils +, nixosTests +}: + +stdenv.mkDerivation rec { + pname = "cups-pdf-to-pdf"; + version = "unstable-2021-12-22"; + + src = fetchFromGitHub { + owner = "alexivkin"; + repo = "CUPS-PDF-to-PDF"; + rev = "c14428c2ca8e95371daad7db6d11c84046b1a2d4"; + hash = "sha256-pa4PFf8OAFSra0hSazmKUfbMYL/cVWvYA1lBf7c7jmY="; + }; + + buildInputs = [ cups ]; + + postPatch = '' + sed -r 's|(gscall, size, ")cp |\1${coreutils}/bin/cp |' cups-pdf.c -i + ''; + + # gcc command line is taken from original cups-pdf's README file + # https://fossies.org/linux/cups-pdf/README + # however, we replace gcc with $CC following + # https://nixos.org/manual/nixpkgs/stable/#sec-darwin + buildPhase = '' + runHook preBuild + $CC -O9 -s cups-pdf.c -o cups-pdf -lcups + runHook postBuild + ''; + + installPhase = '' + runHook preInstall + install -Dt $out/lib/cups/backend cups-pdf + install -Dm 0644 -t $out/etc/cups cups-pdf.conf + install -Dm 0644 -t $out/share/cups/model *.ppd + runHook postInstall + ''; + + passthru.tests.vmtest = nixosTests.cups-pdf; + + meta = with lib; { + description = "A CUPS backend that turns print jobs into searchable PDF files"; + homepage = "https://github.com/alexivkin/CUPS-PDF-to-PDF"; + license = licenses.gpl2Only; + maintainers = [ maintainers.yarny ]; + longDescription = '' + cups-pdf is a CUPS backend that generates a PDF file for each print job and puts this file + into a folder on the local machine such that the print job's owner can access the file. + + https://www.cups-pdf.de/ + + cups-pdf-to-pdf is a fork of cups-pdf which tries hard to preserve the original text of the print job by avoiding rasterization. + + Note that in order to use this package, you have to make sure that the cups-pdf program is called with root privileges. + ''; + }; +} diff --git a/third_party/nixpkgs/pkgs/misc/drivers/epkowa/default.nix b/third_party/nixpkgs/pkgs/misc/drivers/epkowa/default.nix index 37e4d2baa3..cf54b048f5 100644 --- a/third_party/nixpkgs/pkgs/misc/drivers/epkowa/default.nix +++ b/third_party/nixpkgs/pkgs/misc/drivers/epkowa/default.nix @@ -255,6 +255,38 @@ let plugins = { }; meta = common_meta // { description = "iscan GT-S650 for " + passthru.hw; }; }; + x750 = stdenv.mkDerivation rec { + name = "iscan-gt-x750-bundle"; + version = "2.30.4"; + + src = fetchurl { + urls = [ + "https://download2.ebz.epson.net/iscan/plugin/gt-x750/rpm/x64/iscan-gt-x750-bundle-${version}.x64.rpm.tar.gz" + "https://web.archive.org/web/https://download2.ebz.epson.net/iscan/plugin/gt-x750/rpm/x64/iscan-gt-x750-bundle-${version}.x64.rpm.tar.gz" + ]; + sha256 = "sha256-9EeBHmh1nwSxnTnevPP8RZ4WBdyY+itR3VXo2I7f5N0="; + }; + + nativeBuildInputs = [ autoPatchelfHook rpm ]; + + installPhase = '' + cd plugins + ${rpm}/bin/rpm2cpio iscan-plugin-gt-x750-*.x86_64.rpm | ${cpio}/bin/cpio -idmv + mkdir $out + cp -r usr/share $out + cp -r usr/lib64 $out/lib + mv $out/share/iscan $out/share/esci + mv $out/lib/iscan $out/lib/esci + ''; + + passthru = { + registrationCommand = '' + $registry --add interpreter usb 0x04b8 0x0119 "$plugin/lib/esci/libesint54 $plugin/share/esci/esfw54.bin" + ''; + hw = "GT-X750, Perfection 4490"; + }; + meta = common_meta // { description = "iscan GT-X750 for " + passthru.hw; }; + }; network = stdenv.mkDerivation rec { pname = "iscan-nt-bundle"; # for the version, look for the driver of XP-750 in the search page diff --git a/third_party/nixpkgs/pkgs/misc/dxvk/default.nix b/third_party/nixpkgs/pkgs/misc/dxvk/default.nix index 6664db0e9e..7d5af28d81 100644 --- a/third_party/nixpkgs/pkgs/misc/dxvk/default.nix +++ b/third_party/nixpkgs/pkgs/misc/dxvk/default.nix @@ -22,12 +22,16 @@ stdenvNoCC.mkDerivation (finalAttrs: # platforms diverge (due to the need for Darwin-specific patches that would fail to apply). # Should that happen, set `darwin` to the last working `rev` and `hash`. srcs = rec { - darwin = { inherit (default) rev hash version; }; - default = { + darwin = { rev = "v${finalAttrs.version}"; hash = "sha256-T93ZylxzJGprrP+j6axZwl2d3hJowMCUOKNjIyNzkmE="; version = "1.10.3"; }; + default = { + rev = "v${finalAttrs.version}"; + hash = "sha256-mboVLdPgZMzmqyeF0jAloEz6xqfIDiY/X98e7l2KZnw="; + version = "2.0"; + }; }; in { @@ -60,10 +64,12 @@ stdenvNoCC.mkDerivation (finalAttrs: installPhase = '' mkdir -p $out/bin $bin $lib + # Replace both basedir forms to support both DXVK 2.0 and older versions. substitute setup_dxvk.sh $out/bin/setup_dxvk.sh \ --subst-var-by mcfgthreads32 "${pkgsCross.mingw32.windows.mcfgthreads}" \ --subst-var-by mcfgthreads64 "${pkgsCross.mingwW64.windows.mcfgthreads}" \ - --replace 'basedir=$(dirname "$(readlink -f $0)")' "basedir=$bin" + --replace 'basedir=$(dirname "$(readlink -f $0)")' "basedir=$bin" \ + --replace 'basedir="$(dirname "$(readlink -f "$0")")"' "basedir=$bin" chmod a+x $out/bin/setup_dxvk.sh declare -A dxvks=( [x32]=${dxvk32} [x64]=${dxvk64} ) for arch in "''${!dxvks[@]}"; do diff --git a/third_party/nixpkgs/pkgs/misc/dxvk/dxvk.nix b/third_party/nixpkgs/pkgs/misc/dxvk/dxvk.nix index 2eb4f30df2..7607c9ee44 100644 --- a/third_party/nixpkgs/pkgs/misc/dxvk/dxvk.nix +++ b/third_party/nixpkgs/pkgs/misc/dxvk/dxvk.nix @@ -7,18 +7,31 @@ , windows , src , version +, spirv-headers +, vulkan-headers , dxvkPatches }: +let + # DXVK 2.0+ no longer vendors certain dependencies. This derivation also needs to build on Darwin, + # which does not currently support DXVK 2.0, so adapt conditionally for this situation. + isDxvk2 = lib.versionAtLeast version "2.0"; +in stdenv.mkDerivation { pname = "dxvk"; inherit src version; nativeBuildInputs = [ glslang meson ninja ]; - buildInputs = [ windows.pthreads ]; + buildInputs = [ windows.pthreads ] + ++ lib.optionals isDxvk2 [ spirv-headers vulkan-headers ]; patches = dxvkPatches; + preConfigure = lib.optionalString isDxvk2 '' + ln -s ${lib.getDev spirv-headers}/include include/spirv/include + ln -s ${lib.getDev vulkan-headers}/include include/vulkan/include + ''; + mesonFlags = let arch = if stdenv.is32bit then "32" else "64"; diff --git a/third_party/nixpkgs/pkgs/misc/fastly/default.nix b/third_party/nixpkgs/pkgs/misc/fastly/default.nix index 9b81a34248..081a063cdb 100644 --- a/third_party/nixpkgs/pkgs/misc/fastly/default.nix +++ b/third_party/nixpkgs/pkgs/misc/fastly/default.nix @@ -49,8 +49,8 @@ buildGoModule rec { ]; preBuild = let cliConfigToml = fetchurl { - url = "https://web.archive.org/web/20221104122906/https://developer.fastly.com/api/internal/cli-config"; - sha256 = "sha256-BHsUWrMp//X95gcB+WbD/nfyduZUkH8jHXk3CfOBAhg="; + url = "https://web.archive.org/web/20221224152051/https://developer.fastly.com/api/internal/cli-config"; + hash = "sha256-IjakfeqjHshlGoamRJTnhUC8cTVMIY63F3vO6I/ZHO4="; }; in '' cp ${cliConfigToml} ./pkg/config/config.toml diff --git a/third_party/nixpkgs/pkgs/misc/flashfocus/default.nix b/third_party/nixpkgs/pkgs/misc/flashfocus/default.nix index 67cde0924c..5f6df66dd4 100644 --- a/third_party/nixpkgs/pkgs/misc/flashfocus/default.nix +++ b/third_party/nixpkgs/pkgs/misc/flashfocus/default.nix @@ -36,9 +36,7 @@ python3.pkgs.buildPythonApplication rec { pythonImportsCheck = [ "flashfocus" ]; - passthru.updateScript = nix-update-script { - attrPath = pname; - }; + passthru.updateScript = nix-update-script { }; meta = with lib; { homepage = "https://github.com/fennerm/flashfocus"; diff --git a/third_party/nixpkgs/pkgs/misc/logging/pacemaker/default.nix b/third_party/nixpkgs/pkgs/misc/logging/pacemaker/default.nix index 5da634203d..7d8cd24e3d 100644 --- a/third_party/nixpkgs/pkgs/misc/logging/pacemaker/default.nix +++ b/third_party/nixpkgs/pkgs/misc/logging/pacemaker/default.nix @@ -29,13 +29,13 @@ stdenv.mkDerivation rec { pname = "pacemaker"; - version = "2.1.4"; + version = "2.1.5"; src = fetchFromGitHub { owner = "ClusterLabs"; repo = pname; rev = "Pacemaker-${version}"; - sha256 = "sha256-b3ljxAuawhqTnURBJMqy4Zzzfi8PCFwie/zC1yeErhQ="; + sha256 = "sha256-vsHWNKCrHJIgXlJYyZZEUfuIUBnaejPrPCM1HrYOTKQ="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/misc/sagetex/default.nix b/third_party/nixpkgs/pkgs/misc/sagetex/default.nix index a30f037d9c..510219e51b 100644 --- a/third_party/nixpkgs/pkgs/misc/sagetex/default.nix +++ b/third_party/nixpkgs/pkgs/misc/sagetex/default.nix @@ -6,14 +6,14 @@ stdenv.mkDerivation rec { pname = "sagetex"; - version = "3.6"; + version = "3.6.1"; passthru.tlType = "run"; src = fetchFromGitHub { owner = "sagemath"; repo = "sagetex"; rev = "v${version}"; - sha256 = "8iHcJbaY/dh0vmvYyd6zj1ZbuJRaJGb6bUBK1v4gXWU="; + sha256 = "sha256-OfhbXHbGI+DaDHqZCOGiSHJPHjGuT7ZqSEjKweloW38="; }; buildInputs = [ diff --git a/third_party/nixpkgs/pkgs/misc/scrcpy/default.nix b/third_party/nixpkgs/pkgs/misc/scrcpy/default.nix index 07ab968385..fa2fab2d96 100644 --- a/third_party/nixpkgs/pkgs/misc/scrcpy/default.nix +++ b/third_party/nixpkgs/pkgs/misc/scrcpy/default.nix @@ -2,6 +2,7 @@ , meson , ninja , pkg-config +, runtimeShell , installShellFiles , platform-tools @@ -11,10 +12,10 @@ }: let - version = "1.24"; + version = "1.25"; prebuilt_server = fetchurl { url = "https://github.com/Genymobile/scrcpy/releases/download/v${version}/scrcpy-server-v${version}"; - sha256 = "sha256-rnSoHqecDcclDlhmJ8J4wKmoxd5GyftcOMFn+xo28FY="; + sha256 = "sha256-zgMGx7vQaucvbQb37A7jN3SZWmXeceCoOBPstnrsm9s="; }; in stdenv.mkDerivation rec { @@ -25,7 +26,7 @@ stdenv.mkDerivation rec { owner = "Genymobile"; repo = pname; rev = "v${version}"; - sha256 = "sha256-mL0lSZUPMMcLGq4iPp/IgYZLaTeey9Nv9vVwY1gaIRk="; + sha256 = "sha256-4U/ChooesjhZSvxvk9dZrpZ/X0lf62+LEn72Ubrm2eM="; }; # postPatch: @@ -52,6 +53,9 @@ stdenv.mkDerivation rec { # runtime dep on `adb` to push the server wrapProgram "$out/bin/scrcpy" --prefix PATH : "${platform-tools}/bin" + '' + lib.optionalString stdenv.isLinux '' + substituteInPlace $out/share/applications/scrcpy-console.desktop \ + --replace "/bin/bash" "${runtimeShell}" ''; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/misc/screensavers/alock/default.nix b/third_party/nixpkgs/pkgs/misc/screensavers/alock/default.nix index 74155f43c2..46af4b303d 100644 --- a/third_party/nixpkgs/pkgs/misc/screensavers/alock/default.nix +++ b/third_party/nixpkgs/pkgs/misc/screensavers/alock/default.nix @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { description = "Simple screen lock application for X server"; longDescription = '' alock locks the X server until the user enters a password - via the keyboard. If the authentification was successful + via the keyboard. If the authentication was successful the X server is unlocked and the user can continue to work. alock does not provide any fancy animations like xlock or diff --git a/third_party/nixpkgs/pkgs/misc/screensavers/light-locker/default.nix b/third_party/nixpkgs/pkgs/misc/screensavers/light-locker/default.nix index 0ad2c77dc7..33db5825bc 100644 --- a/third_party/nixpkgs/pkgs/misc/screensavers/light-locker/default.nix +++ b/third_party/nixpkgs/pkgs/misc/screensavers/light-locker/default.nix @@ -66,9 +66,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/misc/tmux-plugins/default.nix b/third_party/nixpkgs/pkgs/misc/tmux-plugins/default.nix index 25a84e4b30..aee7406f9d 100644 --- a/third_party/nixpkgs/pkgs/misc/tmux-plugins/default.nix +++ b/third_party/nixpkgs/pkgs/misc/tmux-plugins/default.nix @@ -101,7 +101,7 @@ in rec { }; meta = { homepage = "https://github.com/tmux-plugins/tmux-continuum"; - description = "continous saving of tmux environment"; + description = "continuous saving of tmux environment"; longDescription = '' Features: @@ -340,6 +340,24 @@ in rec { }; }; + mode-indicator = mkTmuxPlugin rec { + pluginName = "mode-indicator"; + version = "unstable-2021-10-01"; + src = fetchFromGitHub { + owner = "MunifTanjim"; + repo = "tmux-mode-indicator"; + rev = "11520829210a34dc9c7e5be9dead152eaf3a4423"; + sha256 = "sha256-hlhBKC6UzkpUrCanJehs2FxK5SoYBoiGiioXdx6trC4="; + }; + meta = with lib; { + homepage = "https://github.com/MunifTanjim/tmux-mode-indicator"; + description = "Plugin that displays prompt indicating currently active Tmux mode"; + license = licenses.mit; + platforms = platforms.unix; + maintainers = with maintainers; [ aacebedo ]; + }; + }; + net-speed = mkTmuxPlugin { pluginName = "net-speed"; version = "unstable-2018-12-02"; diff --git a/third_party/nixpkgs/pkgs/misc/uboot/default.nix b/third_party/nixpkgs/pkgs/misc/uboot/default.nix index 2937e1ca86..2358a59f5d 100644 --- a/third_party/nixpkgs/pkgs/misc/uboot/default.nix +++ b/third_party/nixpkgs/pkgs/misc/uboot/default.nix @@ -211,6 +211,47 @@ in { ''; }; + # Flashing instructions: + # dd if=u-boot.gxl.sd.bin of= conv=fsync,notrunc bs=512 skip=1 seek=1 + # dd if=u-boot.gxl.sd.bin of= conv=fsync,notrunc bs=1 count=444 + ubootLibreTechCC = let + firmwareImagePkg = fetchFromGitHub { + owner = "LibreELEC"; + repo = "amlogic-boot-fip"; + rev = "4369a138ca24c5ab932b8cbd1af4504570b709df"; + sha256 = "sha256-mGRUwdh3nW4gBwWIYHJGjzkezHxABwcwk/1gVRis7Tc="; + meta.license = lib.licenses.unfreeRedistributableFirmware; + }; + in + assert stdenv.buildPlatform.system == "x86_64-linux"; # aml_encrypt_gxl is a x86_64 binary + buildUBoot { + defconfig = "libretech-cc_defconfig"; + extraMeta.platforms = ["aarch64-linux"]; + filesToInstall = ["u-boot.bin"]; + postBuild = '' + # Copy binary files & tools from LibreELEC/amlogic-boot-fip, and u-boot build to working dir + mkdir $out tmp + cp ${firmwareImagePkg}/lepotato/{acs.bin,bl2.bin,bl21.bin,bl30.bin,bl301.bin,bl31.img} \ + ${firmwareImagePkg}/lepotato/{acs_tool.py,aml_encrypt_gxl,blx_fix.sh} \ + u-boot.bin tmp/ + cd tmp + python3 acs_tool.py bl2.bin bl2_acs.bin acs.bin 0 + + bash -e blx_fix.sh bl2_acs.bin zero bl2_zero.bin bl21.bin bl21_zero.bin bl2_new.bin bl2 + [ -f zero ] && rm zero + + bash -e blx_fix.sh bl30.bin zero bl30_zero.bin bl301.bin bl301_zero.bin bl30_new.bin bl30 + [ -f zero ] && rm zero + + ./aml_encrypt_gxl --bl2sig --input bl2_new.bin --output bl2.n.bin.sig + ./aml_encrypt_gxl --bl3enc --input bl30_new.bin --output bl30_new.bin.enc + ./aml_encrypt_gxl --bl3enc --input bl31.img --output bl31.img.enc + ./aml_encrypt_gxl --bl3enc --input u-boot.bin --output bl33.bin.enc + ./aml_encrypt_gxl --bootmk --output $out/u-boot.gxl \ + --bl2 bl2.n.bin.sig --bl30 bl30_new.bin.enc --bl31 bl31.img.enc --bl33 bl33.bin.enc + ''; + }; + ubootNanoPCT4 = buildUBoot rec { rkbin = fetchFromGitHub { owner = "armbian"; diff --git a/third_party/nixpkgs/pkgs/os-specific/darwin/pam-reattach/default.nix b/third_party/nixpkgs/pkgs/os-specific/darwin/pam-reattach/default.nix index 03d0547fc1..4350865080 100644 --- a/third_party/nixpkgs/pkgs/os-specific/darwin/pam-reattach/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/darwin/pam-reattach/default.nix @@ -1,12 +1,5 @@ { lib, stdenv, fetchFromGitHub, cmake, openpam, darwin }: -let - sdk = - if stdenv.isAarch64 - then null - else darwin.apple_sdk.sdk; -in - stdenv.mkDerivation rec { pname = "pam_reattach"; version = "1.3"; @@ -26,12 +19,10 @@ stdenv.mkDerivation rec { "arm64" }" "-DENABLE_CLI=ON" - ] - ++ lib.optional (sdk != null) - "-DCMAKE_LIBRARY_PATH=${sdk}/usr/lib"; + ] ++ lib.optional (!stdenv.isAarch64) "-DCMAKE_LIBRARY_PATH=${darwin.apple_sdk.sdk}/usr/lib"; buildInputs = [ openpam ] - ++ lib.optional (sdk != null) sdk; + ++ lib.optional (!stdenv.isAarch64) darwin.apple_sdk.sdk; nativeBuildInputs = [ cmake ]; diff --git a/third_party/nixpkgs/pkgs/os-specific/darwin/plistwatch/default.nix b/third_party/nixpkgs/pkgs/os-specific/darwin/plistwatch/default.nix new file mode 100644 index 0000000000..852c9c23aa --- /dev/null +++ b/third_party/nixpkgs/pkgs/os-specific/darwin/plistwatch/default.nix @@ -0,0 +1,31 @@ +{ lib +, buildGoModule +, fetchFromGitHub +}: + +buildGoModule rec { + pname = "plistwatch"; + version = "unstable-2020-12-22"; + + src = fetchFromGitHub { + owner = "catilac"; + repo = "plistwatch"; + rev = "c3a9afd8d3e5ffa8dcc379770bc4216bae88a671"; + sha256 = "0a5rfmpy6h06p02z9gdilh7vr3h9cc6n6zzygpjk6zvnqs3mm3vx"; + }; + + vendorSha256 = "sha256-Layg1axFN86OFgxEyNFtIlm6Jtx317jZb/KH6IjJ8e4="; + + #add missing dependencies and hashes + patches = [ ./go-modules.patch ]; + + doCheck = false; + + meta = with lib; { + description = "Monitors and prints changes to MacOS plists in real time"; + homepage = "https://github.com/catilac/plistwatch"; + maintainers = with maintainers; [ gdinh ]; + license = licenses.mit; + platforms = platforms.darwin; + }; +} diff --git a/third_party/nixpkgs/pkgs/os-specific/darwin/plistwatch/go-modules.patch b/third_party/nixpkgs/pkgs/os-specific/darwin/plistwatch/go-modules.patch new file mode 100644 index 0000000000..94d7cc01e2 --- /dev/null +++ b/third_party/nixpkgs/pkgs/os-specific/darwin/plistwatch/go-modules.patch @@ -0,0 +1,19 @@ +--- a/go.mod ++++ b/go.mod +@@ -3,1 +3,6 @@ + go 1.14 ++ require( ++ github.com/jessevdk/go-flags v1.5.0 ++ howett.net/plist v0.0.0-20200419221736-3b63eb3a43b5 ++ gopkg.in/yaml.v1 v1.0.0-20140924161607-9f9df34309c0 // indirect ++ ) +--- a/go.sum ++++ b/go.sum +@@ -9,1 +9,7 @@ + howett.net/plist v0.0.0-20200419221736-3b63eb3a43b5/go.mod h1:vMygbs4qMhSZSc4lCUl2OEE+rDiIIJAIdR4m7MiMcm0= ++ gopkg.in/yaml.v1 v1.0.0-20140924161607-9f9df34309c0 h1:POO/ycCATvegFmVuPpQzZFJ+pGZeX22Ufu6fibxDVjU= ++ gopkg.in/yaml.v1 v1.0.0-20140924161607-9f9df34309c0/go.mod h1:WDnlLJ4WF5VGsH/HVa3CI79GS0ol3YnhVnKP89i0kNg= ++ github.com/jessevdk/go-flags v1.5.0 h1:1jKYvbxEjfUl0fmqTCOfonvskHHXMjBySTLW4y9LFvc= ++ github.com/jessevdk/go-flags v1.5.0/go.mod h1:Fw0T6WPc1dYxT4mKEZRfG5kJhaTDP9pj1c2EWnYs/m4= ++ golang.org/x/sys v0.0.0-20210320140829-1e4c9ba3b0c4 h1:EZ2mChiOa8udjfp6rRmswTbtZN/QzUQp4ptM4rnjHvc= ++ golang.org/x/sys v0.0.0-20210320140829-1e4c9ba3b0c4/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= diff --git a/third_party/nixpkgs/pkgs/os-specific/darwin/yabai/default.nix b/third_party/nixpkgs/pkgs/os-specific/darwin/yabai/default.nix index 20aefcb882..2c7114c76a 100644 --- a/third_party/nixpkgs/pkgs/os-specific/darwin/yabai/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/darwin/yabai/default.nix @@ -136,7 +136,7 @@ in ''; # Defining this here exposes it as a passthru attribute, which is useful because it allows us to run `builtins.hashFile` on it in pure-eval mode. - # With that we can programatically generate an `/etc/sudoers.d` entry which disables the password requirement, so that a user-agent can run it at login. + # With that we can programmatically generate an `/etc/sudoers.d` entry which disables the password requirement, so that a user-agent can run it at login. loadScriptingAddition = writeShellScript "yabai-load-sa" '' # For whatever reason the regular commands to load the scripting addition do not work, yabai will throw an error. # The installation command mutably installs binaries to '/System', but then fails to start them. Manually running diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/bcc/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/bcc/default.nix index d8026fa0d6..772447ed0c 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/bcc/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/bcc/default.nix @@ -7,7 +7,7 @@ python.pkgs.buildPythonApplication rec { pname = "bcc"; - version = "0.25.0"; + version = "0.26.0"; disabled = !stdenv.isLinux; @@ -15,7 +15,7 @@ python.pkgs.buildPythonApplication rec { owner = "iovisor"; repo = "bcc"; rev = "v${version}"; - sha256 = "sha256-05FQWBxFI8bxjm6vDCoEqqpAd4Agn84M28P3G6F3tag="; + sha256 = "sha256-zx38tPwuuGU6px9pRNN5JtvBysK9fStOvoqe7cLo7LM="; }; format = "other"; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/brillo/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/brillo/default.nix index 246aa471c2..86fabf1644 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/brillo/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/brillo/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "brillo"; - version = "1.4.10"; + version = "1.4.11"; src = fetchFromGitLab { owner= "cameronnemo"; repo= "brillo"; rev= "v${version}"; - sha256 = "sha256-x8K6CMkOyR+kWRlqa/BmJogZo41LvsL1kfz6CZ5PaUI="; + sha256 = "sha256-R83Zx0dw9bmCF5kHTNYoNzCmJZK3cVzXNb30qAUexFc="; }; patches = [ diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/broadcom-sta/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/broadcom-sta/default.nix index 661bb7fc92..6b7d8b912f 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/broadcom-sta/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/broadcom-sta/default.nix @@ -45,6 +45,8 @@ stdenv.mkDerivation { ./linux-5.18.patch # source: https://gist.github.com/joanbm/207210d74637870c01ef5a3c262a597d ./linux-6.0.patch + # source: https://gist.github.com/joanbm/94323ea99eff1e1d1c51241b5b651549 + ./linux-6.1.patch ./pedantic-fix.patch ./null-pointer-fix.patch ./gcc.patch diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/broadcom-sta/linux-6.1.patch b/third_party/nixpkgs/pkgs/os-specific/linux/broadcom-sta/linux-6.1.patch new file mode 100644 index 0000000000..5ececd487d --- /dev/null +++ b/third_party/nixpkgs/pkgs/os-specific/linux/broadcom-sta/linux-6.1.patch @@ -0,0 +1,83 @@ +From a63a5f70e5cf05f6bce4cda2e0dd67462e1d76a5 Mon Sep 17 00:00:00 2001 +From: Joan Bruguera +Date: Mon, 29 Aug 2022 00:06:53 +0200 +Subject: [PATCH] Tentative patch for broadcom-wl 6.30.223.271 driver for Linux 6.1-rc1 + +Applies on top of all the patches applied to broadcom-wl-dkms 6.30.223.271-35 on Arch Linux +--- + src/wl/sys/wl_cfg80211_hybrid.c | 21 +++++++++++++-------- + 1 file changed, 13 insertions(+), 8 deletions(-) + +diff --git a/src/wl/sys/wl_cfg80211_hybrid.c b/src/wl/sys/wl_cfg80211_hybrid.c +index 4fef22a..50d1e34 100644 +--- a/src/wl/sys/wl_cfg80211_hybrid.c ++++ b/src/wl/sys/wl_cfg80211_hybrid.c +@@ -105,20 +105,25 @@ static s32 wl_cfg80211_get_tx_power(struct wiphy *wiphy, struct wireless_dev *wd + static s32 wl_cfg80211_get_tx_power(struct wiphy *wiphy, s32 *dbm); + #endif + ++#if LINUX_VERSION_CODE >= KERNEL_VERSION(6, 1, 0) ++#define MAYBE_INT_LINK_ID int link_id, ++#else ++#define MAYBE_INT_LINK_ID ++#endif + #if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 38) + static s32 wl_cfg80211_config_default_key(struct wiphy *wiphy, +- struct net_device *dev, u8 key_idx, bool unicast, bool multicast); ++ struct net_device *dev, MAYBE_INT_LINK_ID u8 key_idx, bool unicast, bool multicast); + #else + static s32 wl_cfg80211_config_default_key(struct wiphy *wiphy, + struct net_device *dev, u8 key_idx); + #endif + #if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 37) + static s32 wl_cfg80211_add_key(struct wiphy *wiphy, struct net_device *dev, +- u8 key_idx, bool pairwise, const u8 *mac_addr, struct key_params *params); ++ MAYBE_INT_LINK_ID u8 key_idx, bool pairwise, const u8 *mac_addr, struct key_params *params); + static s32 wl_cfg80211_del_key(struct wiphy *wiphy, struct net_device *dev, +- u8 key_idx, bool pairwise, const u8 *mac_addr); ++ MAYBE_INT_LINK_ID u8 key_idx, bool pairwise, const u8 *mac_addr); + static s32 wl_cfg80211_get_key(struct wiphy *wiphy, struct net_device *dev, +- u8 key_idx, bool pairwise, const u8 *mac_addr, ++ MAYBE_INT_LINK_ID u8 key_idx, bool pairwise, const u8 *mac_addr, + void *cookie, void (*callback) (void *cookie, struct key_params *params)); + #else + static s32 wl_cfg80211_add_key(struct wiphy *wiphy, struct net_device *dev, +@@ -1165,7 +1170,7 @@ static s32 wl_cfg80211_get_tx_power(struct wiphy *wiphy, s32 *dbm) + #if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 38) + static s32 + wl_cfg80211_config_default_key(struct wiphy *wiphy, +- struct net_device *dev, u8 key_idx, bool unicast, bool multicast) ++ struct net_device *dev, MAYBE_INT_LINK_ID u8 key_idx, bool unicast, bool multicast) + #else + static s32 + wl_cfg80211_config_default_key(struct wiphy *wiphy, +@@ -1190,7 +1195,7 @@ wl_cfg80211_config_default_key(struct wiphy *wiphy, + #if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 37) + static s32 + wl_cfg80211_add_key(struct wiphy *wiphy, struct net_device *dev, +- u8 key_idx, bool pairwise, const u8 *mac_addr, struct key_params *params) ++ MAYBE_INT_LINK_ID u8 key_idx, bool pairwise, const u8 *mac_addr, struct key_params *params) + #else + static s32 + wl_cfg80211_add_key(struct wiphy *wiphy, struct net_device *dev, +@@ -1311,7 +1316,7 @@ wl_cfg80211_add_key(struct wiphy *wiphy, struct net_device *dev, + #if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 37) + static s32 + wl_cfg80211_del_key(struct wiphy *wiphy, struct net_device *dev, +- u8 key_idx, bool pairwise, const u8 *mac_addr) ++ MAYBE_INT_LINK_ID u8 key_idx, bool pairwise, const u8 *mac_addr) + #else + static s32 + wl_cfg80211_del_key(struct wiphy *wiphy, struct net_device *dev, +@@ -1354,7 +1359,7 @@ wl_cfg80211_del_key(struct wiphy *wiphy, struct net_device *dev, + #if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 37) + static s32 + wl_cfg80211_get_key(struct wiphy *wiphy, struct net_device *dev, +- u8 key_idx, bool pairwise, const u8 *mac_addr, void *cookie, ++ MAYBE_INT_LINK_ID u8 key_idx, bool pairwise, const u8 *mac_addr, void *cookie, + void (*callback) (void *cookie, struct key_params * params)) + #else + static s32 +-- +2.37.2 + diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/catfs/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/catfs/default.nix index dbb525e0e2..36eaf60720 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/catfs/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/catfs/default.nix @@ -6,25 +6,22 @@ rustPlatform.buildRustPackage rec { pname = "catfs"; - version = "unstable-2020-03-21"; + version = "0.9.0"; src = fetchFromGitHub { owner = "kahing"; repo = pname; - rev = "daa2b85798fa8ca38306242d51cbc39ed122e271"; - sha256 = "0zca0c4n2p9s5kn8c9f9lyxdf3df88a63nmhprpgflj86bh8wgf5"; + rev = "v${version}"; + hash = "sha256-OvmtU2jpewP5EqPwEFAf67t8UCI1WuzUO2QQj4cH1Ak="; }; - cargoSha256 = "1agcwq409s40kyij487wjrp8mj7942r9l2nqwks4xqlfb0bvaimf"; - - cargoPatches = [ - # update cargo lock - (fetchpatch { - url = "https://github.com/kahing/catfs/commit/f838c1cf862cec3f1d862492e5be82b6dbe16ac5.patch"; - sha256 = "1r1p0vbr3j9xyj9r1ahipg4acii3m4ni4m9mp3avbi1rfgzhblhw"; - }) + patches = [ + # monitor https://github.com/kahing/catfs/issues/71 + ./fix-for-rust-1.65.diff ]; + cargoHash = "sha256-xF1J2Pr4qtNFcd2kec4tnbdYxoLK+jRnzp8p+cmNOcI="; + nativeBuildInputs = [ pkg-config ]; buildInputs = [ fuse ]; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/catfs/fix-for-rust-1.65.diff b/third_party/nixpkgs/pkgs/os-specific/linux/catfs/fix-for-rust-1.65.diff new file mode 100644 index 0000000000..4208c362eb --- /dev/null +++ b/third_party/nixpkgs/pkgs/os-specific/linux/catfs/fix-for-rust-1.65.diff @@ -0,0 +1,13 @@ +diff --git a/src/catfs/file.rs b/src/catfs/file.rs +index 6e781eb..92fdd80 100644 +--- a/src/catfs/file.rs ++++ b/src/catfs/file.rs +@@ -569,7 +569,7 @@ impl Handle { + path: &dyn AsRef, + create: bool, + ) -> error::Result<()> { +- let _ = self.page_in_res.0.lock().unwrap(); ++ drop(self.page_in_res.0.lock().unwrap()); + + let mut buf = [0u8; 0]; + let mut flags = rlibc::O_RDWR; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/firmware/linux-firmware/source.nix b/third_party/nixpkgs/pkgs/os-specific/linux/firmware/linux-firmware/source.nix index fefd7c56d7..2ed667f40c 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/firmware/linux-firmware/source.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/firmware/linux-firmware/source.nix @@ -1,6 +1,6 @@ # This file is autogenerated! Run ./update.sh to regenerate. { - version = "20221109"; - sourceHash = "sha256-77xRUo4g24j5rGWYzVn/DZ1rfY+Ks9cmZ/+GCHELP5E="; - outputHash = "sha256-pPhqbi4PRr+0FQ7K8M/SibgYeI45spcdqgb5garyJo8="; + version = "20221214"; + sourceHash = "sha256-vljUwXekmCYAH932wfbJe/hC4TDPRQOgEiPTUMeUKLE="; + outputHash = "sha256-h0cCqnl6XvSoeyq54JHvl45z7qe/7ZKrcMNJJeqVLMk="; } diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/firmware/rtw89-firmware/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/firmware/rtw89-firmware/default.nix index 8e71770df9..b7289625da 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/firmware/rtw89-firmware/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/firmware/rtw89-firmware/default.nix @@ -1,8 +1,18 @@ -{ stdenvNoCC, lib, linuxPackages }: +{ stdenvNoCC, lib, fetchFromGitHub }: stdenvNoCC.mkDerivation { pname = "rtw89-firmware"; - inherit (linuxPackages.rtw89) version src; + + # TODO: probably remove after updating linux firmware + # https://github.com/lwfinger/rtw89/commit/a2c113501a5a988683f236df1aa79ce40f29e1be + version = "unstable-2021-10-21"; + + src = fetchFromGitHub { + owner = "lwfinger"; + repo = "rtw89"; + rev = "0684157cba90e36bff5bc61a59e7e87c359b5e5c"; + sha256 = "0cvawyi1ksw9xkr8pzwipsl7b8hnmrb17w5cblyicwih8fqaw632"; + }; dontBuild = true; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/firmware/sof-firmware/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/firmware/sof-firmware/default.nix index 24ab894c9f..cccdf997db 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/firmware/sof-firmware/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/firmware/sof-firmware/default.nix @@ -1,38 +1,34 @@ { lib +, fetchurl , stdenvNoCC -, fetchFromGitHub }: stdenvNoCC.mkDerivation rec { pname = "sof-firmware"; - version = "2.2.2"; + version = "2.2.3"; - src = fetchFromGitHub { - owner = "thesofproject"; - repo = "sof-bin"; - rev = "v${version}"; - sha256 = "sha256-ztewE/8Mc0bbKbxmbJ2sBn3TysuM9hoaSgqrboy77oI="; + src = fetchurl { + url = "https://github.com/thesofproject/sof-bin/releases/download/v${version}/sof-bin-v${version}.tar.gz"; + sha256 = "sha256-WR/9ZvHisycDjJHt88hQK0FywdyFDP5EBQ6t+OT620I="; }; dontFixup = true; # binaries must not be stripped or patchelfed - # There is no proper structure in the upstream repo. - # This needs to be adapted by hand for every new release. installPhase = '' runHook preInstall - cd "v2.2.x" - mkdir -p $out/lib/firmware/intel/sof{,-tplg} - cp -a sof-v2.2/* $out/lib/firmware/intel/sof - cp -a sof-v2.2.2/* $out/lib/firmware/intel/sof - cp -a sof-tplg-v2.2.1/* $out/lib/firmware/intel/sof-tplg + mkdir -p $out/lib/firmware/intel + cp -av sof-v${version} $out/lib/firmware/intel/sof + cp -av sof-tplg-v${version} $out/lib/firmware/intel/sof-tplg runHook postInstall ''; meta = with lib; { + changelog = "https://github.com/thesofproject/sof-bin/releases/tag/v${version}"; description = "Sound Open Firmware"; homepage = "https://www.sofproject.org/"; license = with licenses; [ bsd3 isc ]; maintainers = with maintainers; [ lblasc evenbrenden hmenke ]; platforms = with platforms; linux; + sourceProvenance = with sourceTypes; [ binaryNativeCode ]; }; } diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/fnotifystat/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/fnotifystat/default.nix index cffdc72909..c5682c6942 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/fnotifystat/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/fnotifystat/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "fnotifystat"; - version = "0.02.08"; + version = "0.02.09"; src = fetchFromGitHub { owner = "ColinIanKing"; repo = pname; rev = "V${version}"; - hash = "sha256-+vNBufCrXfMinEZhXDZJCwoI9zxrcTy0fOEdswoaNkw="; + hash = "sha256-YyIk7x0B3JB/iMF9OP767fVEBgcV0duV7xIiHZxpL0w="; }; installFlags = [ diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/intel-cmt-cat/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/intel-cmt-cat/default.nix index dd96e51830..16cb022eb6 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/intel-cmt-cat/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/intel-cmt-cat/default.nix @@ -1,14 +1,14 @@ { lib, stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { - version = "4.4.1"; + version = "4.5.0"; pname = "intel-cmt-cat"; src = fetchFromGitHub { owner = "intel"; repo = "intel-cmt-cat"; rev = "v${version}"; - sha256 = "sha256-6v9MRIW9Wqojia6GZNM75AvoYJGJ9C/k+ShwQKOjiL8="; + sha256 = "sha256-gjJtwEDvPW0JDwlIUXSmv1wm4TknKsE/BLKHiqIgjho="; }; enableParallelBuilding = true; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/common-config.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/common-config.nix index 5ac3a827f6..2fee060932 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/common-config.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/common-config.nix @@ -939,6 +939,9 @@ let SCHED_CORE = whenAtLeast "5.14" yes; + LRU_GEN = whenAtLeast "6.1" yes; + LRU_GEN_ENABLED = whenAtLeast "6.1" yes; + FSL_MC_UAPI_SUPPORT = mkIf (stdenv.hostPlatform.system == "aarch64-linux") (whenAtLeast "5.12" yes); ASHMEM = { optional = true; tristate = whenBetween "5.0" "5.18" "y";}; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/generic.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/generic.nix index 5a4c2858f9..5a39ef9150 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/generic.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/generic.nix @@ -29,7 +29,8 @@ structuredExtraConfig ? {} , # The version number used for the module directory - modDirVersion ? version + # If unspecified, this is determined automatically from the version. + modDirVersion ? null , # An attribute set whose attributes express the availability of # certain features in this kernel. E.g. `{iwlwifi = true;}' @@ -194,17 +195,26 @@ let }; }; # end of configfile derivation - kernel = (callPackage ./manual-config.nix { inherit buildPackages; }) (basicArgs // { - inherit modDirVersion kernelPatches randstructSeed lib stdenv extraMakeFlags extraMeta configfile; + kernel = (callPackage ./manual-config.nix { inherit lib stdenv buildPackages; }) (basicArgs // { + inherit kernelPatches randstructSeed extraMakeFlags extraMeta configfile; pos = builtins.unsafeGetAttrPos "version" args; config = { CONFIG_MODULES = "y"; CONFIG_FW_LOADER = "m"; }; - }); + } // lib.optionalAttrs (modDirVersion != null) { inherit modDirVersion; }); passthru = basicArgs // { features = kernelFeatures; - inherit commonStructuredConfig structuredExtraConfig extraMakeFlags isZen isHardened isLibre modDirVersion; + inherit commonStructuredConfig structuredExtraConfig extraMakeFlags isZen isHardened isLibre; isXen = lib.warn "The isXen attribute is deprecated. All Nixpkgs kernels that support it now have Xen enabled." true; + + # Adds dependencies needed to edit the config: + # nix-shell '' -A linux.configEnv --command 'make nconfig' + configEnv = kernel.overrideAttrs (old: { + nativeBuildInputs = old.nativeBuildInputs or [] ++ (with buildPackages; [ + pkg-config ncurses + ]); + }); + passthru = kernel.passthru // (removeAttrs passthru [ "passthru" ]); tests = let overridableKernel = finalKernel // { diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/hardened/patches.json b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/hardened/patches.json index 5ac0c9dc68..ca8d5f90f6 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/hardened/patches.json +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/hardened/patches.json @@ -22,41 +22,41 @@ "5.10": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.10.159-hardened1.patch", - "sha256": "0kjiijq9qd5zyy2gvsn8xv99jv5crfyqi69lchmsqk1gs4qhs7m9", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.159-hardened1/linux-hardened-5.10.159-hardened1.patch" + "name": "linux-hardened-5.10.161-hardened1.patch", + "sha256": "0lkgixy3qn2lf2snp7zsxyp6fad0b6yvvg2hk6l1jp9z8293gsap", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.161-hardened1/linux-hardened-5.10.161-hardened1.patch" }, - "sha256": "19yfi5vknxnw0cb8274q3pb5zjs6ny04n16m8xjdfdmznrbvza8v", - "version": "5.10.159" + "sha256": "0ya04njrxr4d37zkxvivmn5f0bdvcb504pyp9ahwz8nqpk8gdaks", + "version": "5.10.161" }, "5.15": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.15.83-hardened1.patch", - "sha256": "0cyd14xlmiy7bj5psjws2p1xdc7vzhv1hy77xca4mlwssb41zvdb", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.15.83-hardened1/linux-hardened-5.15.83-hardened1.patch" + "name": "linux-hardened-5.15.85-hardened1.patch", + "sha256": "03zjcjyiklhxhq958hx1mlhhjcz0isdrij217q8ji78bz3y40m0q", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.15.85-hardened1/linux-hardened-5.15.85-hardened1.patch" }, - "sha256": "1wvzfhzqq9dps508wmp2gblfz93ipppnjzqm0n8pi1acq11hhna0", - "version": "5.15.83" + "sha256": "024qhjh9mgfnanr1qd8002n6a4wpn98lajli12a0m3n9z8lsw2rc", + "version": "5.15.85" }, "5.4": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.4.227-hardened1.patch", - "sha256": "1q5xxaz154iz65x6n4m1lfsly9p978zzrnp9xdh6sp1cw8g39fyn", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.227-hardened1/linux-hardened-5.4.227-hardened1.patch" + "name": "linux-hardened-5.4.228-hardened1.patch", + "sha256": "0rf324pps25snfcbpfkyxmf6qzx7qjkz0qcnjwrb2lh5fbvx0vik", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.228-hardened1/linux-hardened-5.4.228-hardened1.patch" }, - "sha256": "14q5gy48j78vwnqivrgpdhj778n2jq5l7yiw5na1rwqmfh1wbvsy", - "version": "5.4.227" + "sha256": "0935dq7zbpf0fkppl3q96a2gh1zrmq01h1nivzgmdhjlmhn3n9c0", + "version": "5.4.228" }, "6.0": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-6.0.13-hardened1.patch", - "sha256": "0v037rg3h8khjdr1hhkpqv2xb9g5vc7dklxf8zidaww27gb2g528", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/6.0.13-hardened1/linux-hardened-6.0.13-hardened1.patch" + "name": "linux-hardened-6.0.15-hardened1.patch", + "sha256": "0v7aqxa6ba2jkx1dd9axr9vsnn3pbq30vwfd0akc72zc8c5zll1r", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/6.0.15-hardened1/linux-hardened-6.0.15-hardened1.patch" }, - "sha256": "191dlxcmbx8vy6z2k04jq2kr6hwnaknsnsyycvqnjmvmdf6i3lq8", - "version": "6.0.13" + "sha256": "08389890gq4b9vkvrb22lzkr4blkn3a5ma074ns19gl89wyyp16l", + "version": "6.0.15" } } diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-4.14.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-4.14.nix index 02893f731e..0b954a0ef9 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-4.14.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-4.14.nix @@ -1,4 +1,4 @@ -{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, modDirVersionArg ? null, ... } @ args: +{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, ... } @ args: with lib; @@ -6,7 +6,7 @@ buildLinux (args // rec { version = "4.14.302"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed - modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; + modDirVersion = versions.pad 3 version; # branchVersion needs to be x.y extraMeta.branch = versions.majorMinor version; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-4.19.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-4.19.nix index 44a976ef0c..07583ccb4d 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-4.19.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-4.19.nix @@ -1,4 +1,4 @@ -{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, modDirVersionArg ? null, ... } @ args: +{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, ... } @ args: with lib; @@ -6,7 +6,7 @@ buildLinux (args // rec { version = "4.19.269"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed - modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; + modDirVersion = versions.pad 3 version; # branchVersion needs to be x.y extraMeta.branch = versions.majorMinor version; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-5.10.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-5.10.nix index 5614aeb1ca..56d3acb058 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-5.10.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-5.10.nix @@ -1,18 +1,18 @@ -{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, modDirVersionArg ? null, ... } @ args: +{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, ... } @ args: with lib; buildLinux (args // rec { - version = "5.10.159"; + version = "5.10.161"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed - modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; + modDirVersion = versions.pad 3 version; # branchVersion needs to be x.y extraMeta.branch = versions.majorMinor version; src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "19yfi5vknxnw0cb8274q3pb5zjs6ny04n16m8xjdfdmznrbvza8v"; + sha256 = "0ya04njrxr4d37zkxvivmn5f0bdvcb504pyp9ahwz8nqpk8gdaks"; }; } // (args.argsOverride or {})) diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-5.15.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-5.15.nix index 8e07ff461e..561447eca0 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-5.15.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-5.15.nix @@ -1,18 +1,18 @@ -{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, modDirVersionArg ? null, ... } @ args: +{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, ... } @ args: with lib; buildLinux (args // rec { - version = "5.15.83"; + version = "5.15.85"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed - modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; + modDirVersion = versions.pad 3 version; # branchVersion needs to be x.y extraMeta.branch = versions.majorMinor version; src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "1wvzfhzqq9dps508wmp2gblfz93ipppnjzqm0n8pi1acq11hhna0"; + sha256 = "024qhjh9mgfnanr1qd8002n6a4wpn98lajli12a0m3n9z8lsw2rc"; }; } // (args.argsOverride or { })) diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-5.4.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-5.4.nix index b45ef4f3b5..382abbaa84 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-5.4.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-5.4.nix @@ -1,18 +1,18 @@ -{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, modDirVersionArg ? null, ... } @ args: +{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, ... } @ args: with lib; buildLinux (args // rec { - version = "5.4.227"; + version = "5.4.228"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed - modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; + modDirVersion = versions.pad 3 version; # branchVersion needs to be x.y extraMeta.branch = versions.majorMinor version; src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "14q5gy48j78vwnqivrgpdhj778n2jq5l7yiw5na1rwqmfh1wbvsy"; + sha256 = "0935dq7zbpf0fkppl3q96a2gh1zrmq01h1nivzgmdhjlmhn3n9c0"; }; } // (args.argsOverride or {})) diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-6.0.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-6.0.nix index 2bd2a3f07c..6cb9aae83b 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-6.0.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-6.0.nix @@ -1,18 +1,18 @@ -{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, modDirVersionArg ? null, ... } @ args: +{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, ... } @ args: with lib; buildLinux (args // rec { - version = "6.0.13"; + version = "6.0.15"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed - modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; + modDirVersion = versions.pad 3 version; # branchVersion needs to be x.y extraMeta.branch = versions.majorMinor version; src = fetchurl { url = "mirror://kernel/linux/kernel/v6.x/linux-${version}.tar.xz"; - sha256 = "191dlxcmbx8vy6z2k04jq2kr6hwnaknsnsyycvqnjmvmdf6i3lq8"; + sha256 = "08389890gq4b9vkvrb22lzkr4blkn3a5ma074ns19gl89wyyp16l"; }; } // (args.argsOverride or { })) diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-6.1.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-6.1.nix index 64ed1a717c..594fcb4557 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-6.1.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-6.1.nix @@ -1,18 +1,18 @@ -{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, modDirVersionArg ? null, ... } @ args: +{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, ... } @ args: with lib; buildLinux (args // rec { - version = "6.1"; + version = "6.1.1"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed - modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; + modDirVersion = versions.pad 3 version; # branchVersion needs to be x.y extraMeta.branch = versions.majorMinor version; src = fetchurl { url = "mirror://kernel/linux/kernel/v6.x/linux-${version}.tar.xz"; - sha256 = "sha256-LKHxcFGkMPb+0RluSVJxdQcXGs/ZfZZXchJQJwOyXes="; + sha256 = "1yqxjz0f722s2bcssqg5b6m6lvq5l4vrlh3bjviajda4rxvi7rm3"; }; } // (args.argsOverride or { })) diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-rt-5.10.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-rt-5.10.nix index 103b142054..a97b1acb5a 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-rt-5.10.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-rt-5.10.nix @@ -13,8 +13,7 @@ in buildLinux (args // { inherit version; # modDirVersion needs a patch number, change X.Y-rtZ to X.Y.0-rtZ. - modDirVersion = if (builtins.match "[^.]*[.][^.]*-.*" version) == null then version - else lib.replaceStrings ["-"] [".0-"] version; + modDirVersion = lib.versions.pad 3 version; src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${kversion}.tar.xz"; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-testing.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-testing.nix index 76db1b11bb..f906032505 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-testing.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/linux-testing.nix @@ -1,4 +1,4 @@ -{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, modDirVersionArg ? null, ... } @ args: +{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, ... } @ args: with lib; @@ -7,7 +7,7 @@ buildLinux (args // rec { extraMeta.branch = lib.versions.majorMinor version; # modDirVersion needs to be x.y.z, will always add .0 - modDirVersion = if (modDirVersionArg == null) then builtins.replaceStrings ["-"] [".0-"] version else modDirVersionArg; + modDirVersion = versions.pad 3 version; src = fetchurl { url = "https://git.kernel.org/torvalds/t/linux-${version}.tar.gz"; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/manual-config.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/manual-config.nix index edfd1f7dbc..45281d5d3b 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/manual-config.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/manual-config.nix @@ -1,8 +1,11 @@ -{ lib, buildPackages, runCommand, nettools, bc, bison, flex, perl, rsync, gmp, libmpc, mpfr, openssl +{ lib, stdenv, buildPackages, runCommand, nettools, bc, bison, flex, perl, rsync, gmp, libmpc, mpfr, openssl , libelf, cpio, elfutils, zstd, python3Minimal, zlib, pahole }: let + lib_ = lib; + stdenv_ = stdenv; + readConfig = configfile: import (runCommand "config.nix" {} '' echo "{" > "$out" while IFS='=' read key val; do @@ -12,18 +15,16 @@ let done < "${configfile}" echo "}" >> $out '').outPath; -in { - lib, - # Allow overriding stdenv on each buildLinux call - stdenv, +in lib.makeOverridable ({ # The kernel version version, # Position of the Linux build expression pos ? null, # Additional kernel make flags extraMakeFlags ? [], - # The version of the kernel module directory - modDirVersion ? version, + # The name of the kernel module directory + # Needs to be X.Y.Z[-extra], so pad with zeros if needed. + modDirVersion ? lib.versions.pad 3 version, # The kernel source (tarball, git checkout, etc.) src, # a list of { name=..., patch=..., extraConfig=...} patches @@ -36,7 +37,7 @@ in { # Custom seed used for CONFIG_GCC_PLUGIN_RANDSTRUCT if enabled. This is # automatically extended with extra per-version and per-config values. randstructSeed ? "", - # Use defaultMeta // extraMeta + # Extra meta attributes extraMeta ? {}, # for module compatibility @@ -47,7 +48,7 @@ in { # Whether to utilize the controversial import-from-derivation feature to parse the config allowImportFromDerivation ? false, # ignored - features ? null, + features ? null, lib ? lib_, stdenv ? stdenv_, }: let @@ -386,4 +387,4 @@ stdenv.mkDerivation ((drvAttrs config stdenv.hostPlatform.linux-kernel kernelPat ++ extraMakeFlags; karch = stdenv.hostPlatform.linuxArch; -} // (optionalAttrs (pos != null) { inherit pos; })) +} // (optionalAttrs (pos != null) { inherit pos; }))) diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/xanmod-kernels.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/xanmod-kernels.nix index cd1c827780..d203a46294 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/xanmod-kernels.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/xanmod-kernels.nix @@ -16,7 +16,7 @@ let xanmodKernelFor = { version, suffix ? "xanmod1", hash, variant }: buildLinux (args // rec { inherit version; - modDirVersion = "${version}-${suffix}"; + modDirVersion = lib.versions.pad 3 "${version}-${suffix}"; src = fetchFromGitHub { owner = "xanmod"; @@ -33,7 +33,8 @@ let TCP_CONG_BBR2 = yes; DEFAULT_BBR2 = yes; - # Google's Multigenerational LRU framework + # Multigenerational LRU framework + # This can be removed when the LTS variant reaches version >= 6.1 (since it's on by default then) LRU_GEN = yes; LRU_GEN_ENABLED = yes; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/zen-kernels.nix b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/zen-kernels.nix index 7dad1359ee..08671e83ff 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/kernel/zen-kernels.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/kernel/zen-kernels.nix @@ -12,13 +12,13 @@ let # ./update-zen.py lqx lqxVariant = { version = "6.0.13"; #lqx - suffix = "lqx2"; #lqx - sha256 = "0xxxlv6rk620s947qj6xxxbjc8asynmx4ilbp66ahi92inxqiw29"; #lqx + suffix = "lqx3"; #lqx + sha256 = "0dc295d9dfm3j2nmvkzy21ky1k6jp7c7miqjhqgfjny9yk1b41k4"; #lqx isLqx = true; }; zenKernelsFor = { version, suffix, sha256, isLqx }: buildLinux (args // { inherit version; - modDirVersion = "${lib.concatStringsSep "." (lib.take 3 (lib.splitVersion version ++ [ "0" "0" ]))}-${suffix}"; + modDirVersion = lib.versions.pad 3 "${version}-${suffix}"; isZen = true; src = fetchFromGitHub { diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/mdevctl/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/mdevctl/default.nix index 9762011b7a..80c3c1316d 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/mdevctl/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/mdevctl/default.nix @@ -1,24 +1,36 @@ -{ lib, fetchFromGitHub -, rustPackages, pkg-config, docutils +{ lib +, rustPlatform +, fetchCrate +, docutils +, installShellFiles }: -rustPackages.rustPlatform.buildRustPackage rec { - +rustPlatform.buildRustPackage rec { pname = "mdevctl"; version = "1.2.0"; - src = fetchFromGitHub { - owner = pname; - repo = pname; - rev = "v" + version; - hash = "sha256-Hgl+HsWAYIdabHJdPbCaBNnhY49vpuIjR3l6z2CAmx0="; + src = fetchCrate { + inherit pname version; + hash = "sha256-0X/3DWNDPOgSNNTqcj44sd7DNGFt+uGBjkc876dSgU8="; }; - cargoPatches = [ ./lock.patch ]; + cargoHash = "sha256-TmumQBWuH5fJOe2qzcDtEGbmCs2G9Gfl8mH7xifzRGc="; - cargoHash = "sha256-PXVc7KUMPze06gCnD2gqzlySwPumOw/z31CTd0UHp9w="; + nativeBuildInputs = [ + docutils + installShellFiles + ]; - nativeBuildInputs = [ pkg-config docutils ]; + postInstall = '' + ln -s mdevctl $out/bin/lsmdev + + install -Dm444 60-mdevctl.rules -t $out/lib/udev/rules.d + + installManPage $releaseDir/build/mdevctl-*/out/mdevctl.8 + ln -s mdevctl.8 $out/share/man/man8/lsmdev.8 + + installShellCompletion $releaseDir/build/mdevctl-*/out/{lsmdev,mdevctl}.bash + ''; meta = with lib; { homepage = "https://github.com/mdevctl/mdevctl"; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/mdevctl/lock.patch b/third_party/nixpkgs/pkgs/os-specific/linux/mdevctl/lock.patch deleted file mode 100644 index bb176771ef..0000000000 --- a/third_party/nixpkgs/pkgs/os-specific/linux/mdevctl/lock.patch +++ /dev/null @@ -1,446 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"registry+https://github.com/rust-lang/crates.io-index" -+checksum = "a1be40180e52ecc98ad80b184934baf3d0d29f979574e439af5a55274b35f869" -+dependencies = [ -+ "proc-macro2", -+ "quote", -+ "version_check", -+] -+ -+[[package]] -+name = "proc-macro2" -+version = "1.0.47" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "5ea3d908b0e36316caf9e9e2c4625cdde190a7e6f440d794667ed17a1855e725" -+dependencies = [ -+ "unicode-ident", -+] -+ -+[[package]] -+name = "quote" -+version = "1.0.21" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "bbe448f377a7d6961e30f5955f9b8d106c3f5e449d493ee1b125c1d43c2b5179" -+dependencies = [ -+ "proc-macro2", -+] -+ -+[[package]] -+name = "redox_syscall" -+version = "0.2.16" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "fb5a58c1855b4b6819d59012155603f0b22ad30cad752600aadfcb695265519a" -+dependencies = [ -+ "bitflags", -+] -+ -+[[package]] -+name = "regex" -+version = "1.6.0" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "4c4eb3267174b8c6c2f654116623910a0fef09c4753f8dd83db29c48a0df988b" -+dependencies = [ -+ "aho-corasick", -+ "memchr", -+ "regex-syntax", -+] -+ -+[[package]] -+name = "regex-syntax" -+version = "0.6.27" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "a3f87b73ce11b1619a3c6332f45341e0047173771e8b8b73f87bfeefb7b56244" -+ -+[[package]] -+name = "remove_dir_all" -+version = "0.5.3" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "3acd125665422973a33ac9d3dd2df85edad0f4ae9b00dafb1a05e43a9f5ef8e7" -+dependencies = [ -+ "winapi", -+] -+ -+[[package]] -+name = "ryu" -+version = "1.0.11" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "4501abdff3ae82a1c1b477a17252eb69cee9e66eb915c1abaa4f44d873df9f09" -+ -+[[package]] -+name = "serde" -+version = "1.0.147" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "d193d69bae983fc11a79df82342761dfbf28a99fc8d203dca4c3c1b590948965" -+ -+[[package]] -+name = "serde_json" -+version = "1.0.87" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "6ce777b7b150d76b9cf60d28b55f5847135a003f7d7350c6be7a773508ce7d45" -+dependencies = [ -+ "indexmap", -+ "itoa", -+ "ryu", -+ "serde", -+] -+ -+[[package]] -+name = "strsim" -+version = "0.10.0" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623" -+ -+[[package]] -+name = "syn" -+version = "1.0.103" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "a864042229133ada95abf3b54fdc62ef5ccabe9515b64717bcb9a1919e59445d" -+dependencies = [ -+ "proc-macro2", -+ "quote", -+ "unicode-ident", -+] -+ -+[[package]] -+name = "tempfile" -+version = "3.3.0" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "5cdb1ef4eaeeaddc8fbd371e5017057064af0911902ef36b39801f67cc6d79e4" -+dependencies = [ -+ "cfg-if", -+ "fastrand", -+ "libc", -+ "redox_syscall", -+ "remove_dir_all", -+ "winapi", -+] -+ -+[[package]] -+name = "termcolor" -+version = "1.1.3" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "bab24d30b911b2376f3a13cc2cd443142f0c81dda04c118693e35b3835757755" -+dependencies = [ -+ "winapi-util", -+] -+ -+[[package]] -+name = "textwrap" -+version = "0.16.0" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "222a222a5bfe1bba4a77b45ec488a741b3cb8872e5e499451fd7d0129c9c7c3d" -+ -+[[package]] -+name = "unicode-ident" -+version = "1.0.5" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "6ceab39d59e4c9499d4e5a8ee0e2735b891bb7308ac83dfb4e80cad195c9f6f3" -+ -+[[package]] -+name = "uuid" -+version = "0.8.2" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "bc5cf98d8186244414c848017f0e2676b3fcb46807f6668a97dfe67359a3c4b7" -+dependencies = [ -+ "getrandom", -+] -+ -+[[package]] -+name = "version_check" -+version = "0.9.4" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "49874b5167b65d7193b8aba1567f5c7d93d001cafc34600cee003eda787e483f" -+ -+[[package]] -+name = "wasi" -+version = "0.11.0+wasi-snapshot-preview1" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423" -+ -+[[package]] -+name = "winapi" -+version = "0.3.9" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "5c839a674fcd7a98952e593242ea400abe93992746761e38641405d28b00f419" -+dependencies = [ -+ "winapi-i686-pc-windows-gnu", -+ "winapi-x86_64-pc-windows-gnu", -+] -+ -+[[package]] -+name = "winapi-i686-pc-windows-gnu" -+version = "0.4.0" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6" -+ -+[[package]] -+name = "winapi-util" -+version = "0.1.5" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "70ec6ce85bb158151cae5e5c87f95a8e97d2c0c4b001223f33a334e3ce5de178" -+dependencies = [ -+ "winapi", -+] -+ -+[[package]] -+name = "winapi-x86_64-pc-windows-gnu" -+version = "0.4.0" -+source = "registry+https://github.com/rust-lang/crates.io-index" -+checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f" --- -2.37.2 - diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/nftables/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/nftables/default.nix index abbb3d04a0..340ad619ec 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/nftables/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/nftables/default.nix @@ -9,12 +9,12 @@ }: stdenv.mkDerivation rec { - version = "1.0.5"; + version = "1.0.6"; pname = "nftables"; src = fetchurl { - url = "https://netfilter.org/projects/nftables/files/${pname}-${version}.tar.bz2"; - hash = "sha256-jRtLGDk69DaY0QuqJdK5tjl5ab7srHgWw13QcU5N5Qo="; + url = "https://netfilter.org/projects/nftables/files/${pname}-${version}.tar.xz"; + hash = "sha256-JAdDDd2CmHZw5I3C/anigLqoMHq+wEqxjWCd89sAXkw="; }; nativeBuildInputs = [ diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/nix-ld/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/nix-ld/default.nix index b54f9e3651..0ce112e0a1 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/nix-ld/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/nix-ld/default.nix @@ -12,13 +12,13 @@ let in stdenv.mkDerivation rec { pname = "nix-ld"; - version = "1.0.2"; + version = "1.0.3"; src = fetchFromGitHub { owner = "mic92"; repo = "nix-ld"; rev = version; - sha256 = "sha256-DlWU5i/MykqWgB9vstYbECy3e+XagXWCxi+XDJNey0s="; + sha256 = "sha256-KmnT8YfU/KI4VxBlFMUltlAVLNvF7fTEQEsp41ZUHlA="; }; doCheck = true; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/openvswitch/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/openvswitch/default.nix index 9d902fe9b7..3fc597beaa 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/openvswitch/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/openvswitch/default.nix @@ -1,4 +1,4 @@ import ./generic.nix { - version = "3.0.1"; - hash = "sha256-5KEXFtCRn1syOSKLMrrcEJtWGl/maLlUfhQ7CxlbvWg="; + version = "3.0.3"; + hash = "sha256-9QZlCnbx8s7737WD80NBIQLxcKvFXG/4dWd5Jrm9lGM="; } diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/openvswitch/lts.nix b/third_party/nixpkgs/pkgs/os-specific/linux/openvswitch/lts.nix index 453d05a5af..d5ceae939a 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/openvswitch/lts.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/openvswitch/lts.nix @@ -1,4 +1,4 @@ import ./generic.nix { - version = "2.17.3"; - hash = "sha256-RGgR/JGuJFzDGQSmk3H7C/BEb3sk6yOaA320ADUwEcA="; + version = "2.17.5"; + hash = "sha256-Woye+zUikjdGWIp8pRDBC7CsUrnInfJ23byGcxFtwQY="; } diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/prl-tools/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/prl-tools/default.nix index e3d70f0467..6ea2da037a 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/prl-tools/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/prl-tools/default.nix @@ -24,14 +24,14 @@ assert (!libsOnly) -> kernel != null; stdenv.mkDerivation rec { - version = "18.1.0-53311"; + version = "18.1.1-53328"; pname = "prl-tools"; # We download the full distribution to extract prl-tools-lin.iso from # => ${dmg}/Parallels\ Desktop.app/Contents/Resources/Tools/prl-tools-lin.iso src = fetchurl { url = "https://download.parallels.com/desktop/v${lib.versions.major version}/${version}/ParallelsDesktop-${version}.dmg"; - sha256 = "sha256-2ROPFIDoV2/sMVsVhcSyn0m1QVMCNb399WzKd/cozws="; + sha256 = "sha256-Vw9i7Diki+hKODeosxfCY5bL/UOfwgzeCC6+QmWfIZw="; }; hardeningDisable = [ "pic" "format" ]; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/raspberrypi-eeprom/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/raspberrypi-eeprom/default.nix index 5fd6fd45b3..63ab388eb6 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/raspberrypi-eeprom/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/raspberrypi-eeprom/default.nix @@ -3,13 +3,13 @@ }: stdenvNoCC.mkDerivation rec { pname = "raspberrypi-eeprom"; - version = "2022.04.26-138a1"; + version = "2022.12.07-138a1"; src = fetchFromGitHub { owner = "raspberrypi"; repo = "rpi-eeprom"; rev = "v${version}"; - hash = "sha256-/Y+EaAxJQofDRE67HY8AVqAdOPdFI01/EhYCAT5qlSM="; + hash = "sha256-/Q9zj/Hn/8S7bF1CN6ZCg705VYU+QUagNr4RNgZl+oA="; }; buildInputs = [ python3 ]; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/rtl8821au/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/rtl8821au/default.nix index 0f0dc41bcf..6a0da0c5e1 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/rtl8821au/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/rtl8821au/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "rtl8821au"; - version = "${kernel.version}-unstable-2022-08-22"; + version = "${kernel.version}-unstable-2022-12-22"; src = fetchFromGitHub { owner = "morrownr"; repo = "8821au-20210708"; - rev = "ac275a0ed806fb1c714d8f9194052d4638a68fca"; - sha256 = "sha256-N86zyw5Ap07vk38OfjGfzP7++ysZCIUVnLuwxeY8yws=So"; + rev = "73f2036bc6c8666555fa453d267d3732392c1e00"; + sha256 = "sha256-wx7xQBCfLu3UWB7ghp8dZ7OB2MFd5i8X0/ygyvW2K50="; }; nativeBuildInputs = [ bc nukeReferences ]; @@ -18,6 +18,15 @@ stdenv.mkDerivation rec { NIX_CFLAGS_COMPILE="-Wno-error=incompatible-pointer-types"; + makeFlags = [ + "ARCH=${stdenv.hostPlatform.linuxArch}" + "KSRC=${kernel.dev}/lib/modules/${kernel.modDirVersion}/build" + ("CONFIG_PLATFORM_I386_PC=" + (if stdenv.hostPlatform.isx86 then "y" else "n")) + ("CONFIG_PLATFORM_ARM_RPI=" + (if (stdenv.hostPlatform.isAarch32 || stdenv.hostPlatform.isAarch64) then "y" else "n")) + ] ++ lib.optional (stdenv.hostPlatform != stdenv.buildPlatform) [ + "CROSS_COMPILE=${stdenv.cc.targetPrefix}" + ]; + prePatch = '' substituteInPlace ./Makefile \ --replace /lib/modules/ "${kernel.dev}/lib/modules/" \ @@ -40,7 +49,7 @@ stdenv.mkDerivation rec { description = "rtl8821AU and rtl8812AU chipset driver with firmware"; homepage = "https://github.com/morrownr/8821au"; license = licenses.gpl2Only; - platforms = [ "x86_64-linux" "i686-linux" ]; + platforms = lib.platforms.linux; maintainers = with maintainers; [ plchldr ]; }; } diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/rtl88x2bu/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/rtl88x2bu/default.nix index adc11f1727..38ded6041f 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/rtl88x2bu/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/rtl88x2bu/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "rtl88x2bu"; - version = "${kernel.version}-unstable-2022-08-18"; + version = "${kernel.version}-unstable-2022-12-17"; src = fetchFromGitHub { owner = "morrownr"; repo = "88x2bu-20210702"; - rev = "6dda660a6af1b18654bbbbedd933cdf30683b7a1"; - sha256 = "sha256-o+SLc8EQA3DHYdZQToyoZS0TFkuVEnFStQQUOCFPYXI="; + rev = "9a04d2bb9d882c7f2708560774d7b96a70d83f4b"; + sha256 = "sha256-PxTUCYBfyCDB8IjNKsp7aiPtSI3TFzGuJsHqG66e2Q0="; }; hardeningDisable = [ "pic" ]; diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/rtw89/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/rtw89/default.nix index 6ff208fa6d..1bb42860a8 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/rtw89/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/rtw89/default.nix @@ -5,13 +5,13 @@ let in stdenv.mkDerivation { pname = "rtw89"; - version = "unstable-2021-10-21"; + version = "unstable-2022-12-18"; src = fetchFromGitHub { owner = "lwfinger"; repo = "rtw89"; - rev = "0684157cba90e36bff5bc61a59e7e87c359b5e5c"; - sha256 = "0cvawyi1ksw9xkr8pzwipsl7b8hnmrb17w5cblyicwih8fqaw632"; + rev = "e834edfe8bee6e27e31c2f783817a9c13ff45665"; + sha256 = "19ApYiEvA0E6qgf5XQc03paZ+ghjZL8JoC3vSYYw3xU="; }; nativeBuildInputs = kernel.moduleBuildDependencies; @@ -30,12 +30,12 @@ stdenv.mkDerivation { ''; meta = with lib; { - description = " Driver for Realtek 8852AE, an 802.11ax device"; + description = " Driver for Realtek 8852AE, 8852BE, and 8853CE, 802.11ax devices"; homepage = "https://github.com/lwfinger/rtw89"; license = with licenses; [ gpl2Only ]; maintainers = with maintainers; [ tvorog ]; platforms = platforms.linux; - broken = kernel.kernelOlder "5.4"; + broken = kernel.kernelOlder "5.7"; priority = -1; }; } diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/sgx/azure-dcap-client/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/sgx/azure-dcap-client/default.nix new file mode 100644 index 0000000000..5440e41753 --- /dev/null +++ b/third_party/nixpkgs/pkgs/os-specific/linux/sgx/azure-dcap-client/default.nix @@ -0,0 +1,93 @@ +{ stdenv +, fetchFromGitHub +, fetchurl +, lib +, curl +, nlohmann_json +, openssl +, pkg-config +, linkFarmFromDrvs +, callPackage +}: + +let + # Although those headers are also included in the source of `sgx-psw`, the `azure-dcap-client` build needs specific versions + filterSparse = list: '' + cp -r "$out"/. . + find "$out" -mindepth 1 -delete + cp ${lib.concatStringsSep " " list} "$out/" + ''; + headers = linkFarmFromDrvs "azure-dcpa-client-intel-headers" [ + (fetchFromGitHub rec { + name = "${repo}-headers"; + owner = "intel"; + repo = "SGXDataCenterAttestationPrimitives"; + rev = "0436284f12f1bd5da7e7a06f6274d36b4c8d39f9"; + sparseCheckout = [ "QuoteGeneration/quote_wrapper/common/inc/sgx_ql_lib_common.h" ]; + hash = "sha256-ipKpYHbiwjCUXF/pCArJZy5ko1YX2wqMMdSnMUzhkgY="; + postFetch = filterSparse sparseCheckout; + }) + (fetchFromGitHub rec { + name = "${repo}-headers"; + owner = "intel"; + repo = "linux-sgx"; + rev = "1ccf25b64abd1c2eff05ead9d14b410b3c9ae7be"; + hash = "sha256-WJRoS6+NBVJrFmHABEEDpDhW+zbWFUl65AycCkRavfs="; + sparseCheckout = [ + "common/inc/sgx_report.h" + "common/inc/sgx_key.h" + "common/inc/sgx_attributes.h" + ]; + postFetch = filterSparse sparseCheckout; + }) + ]; +in +stdenv.mkDerivation rec { + pname = "azure-dcap-client"; + version = "1.11.2"; + + src = fetchFromGitHub { + owner = "microsoft"; + repo = pname; + rev = version; + hash = "sha256-EYj3jnzTyJRl6N7avNf9VrB8r9U6zIE6wBNeVsMtWCA="; + }; + + nativeBuildInputs = [ + pkg-config + ]; + + buildInputs = [ + curl + nlohmann_json + openssl + ]; + + postPatch = '' + mkdir -p src/Linux/ext/intel + find -L '${headers}' -type f -exec ln -s {} src/Linux/ext/intel \; + + substitute src/Linux/Makefile{.in,} \ + --replace '##CURLINC##' '${curl.dev}/include/curl/' \ + --replace '$(TEST_SUITE): $(PROVIDER_LIB) $(TEST_SUITE_OBJ)' '$(TEST_SUITE): $(TEST_SUITE_OBJ)' + ''; + + NIX_CFLAGS_COMPILE = "-Wno-deprecated-declarations"; + + makeFlags = [ + "-C src/Linux" + "prefix=$(out)" + ]; + + # Online test suite; run with + # $(nix-build -A sgx-azure-dcap-client.tests.suite)/bin/tests + passthru.tests.suite = callPackage ./test-suite.nix { }; + + meta = with lib; { + description = "Interfaces between SGX SDKs and the Azure Attestation SGX Certification Cache"; + homepage = "https://github.com/microsoft/azure-dcap-client"; + maintainers = with maintainers; [ trundle veehaitch ]; + platforms = [ "x86_64-linux" ]; + license = [ licenses.mit ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/sgx/azure-dcap-client/test-suite.nix b/third_party/nixpkgs/pkgs/os-specific/linux/sgx/azure-dcap-client/test-suite.nix new file mode 100644 index 0000000000..71fdb2bab3 --- /dev/null +++ b/third_party/nixpkgs/pkgs/os-specific/linux/sgx/azure-dcap-client/test-suite.nix @@ -0,0 +1,27 @@ +{ lib +, sgx-azure-dcap-client +, gtest +, makeWrapper +}: +sgx-azure-dcap-client.overrideAttrs (oldAttrs: { + nativeBuildInputs = oldAttrs.nativeBuildInputs ++ [ + makeWrapper + gtest + ]; + + buildFlags = [ + "tests" + ]; + + installPhase = '' + runHook preInstall + + install -D ./src/Linux/tests "$out/bin/tests" + + runHook postInstall + ''; + + postFixup = '' + wrapProgram "$out/bin/tests" --prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath [ sgx-azure-dcap-client ]}" + ''; +}) diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/sgx/psw/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/sgx/psw/default.nix index 2077d23bc9..ba2d0967e4 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/sgx/psw/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/sgx/psw/default.nix @@ -121,7 +121,7 @@ stdenv.mkDerivation rec { mkdir $out/bin makeWrapper $out/aesm/aesm_service $out/bin/aesm_service \ - --prefix LD_LIBRARY_PATH : ${lib.makeLibraryPath [ protobuf ]}:$out/aesm \ + --suffix LD_LIBRARY_PATH : ${lib.makeLibraryPath [ protobuf ]}:$out/aesm \ --chdir "$out/aesm" # Make sure we didn't forget to handle any files diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/systemd/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/systemd/default.nix index 0178cd7d6d..91746b9f10 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/systemd/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/systemd/default.nix @@ -524,7 +524,7 @@ stdenv.mkDerivation { ]; preConfigure = let - # A list of all the runtime binaries that the systemd exectuables, tests and libraries are referencing in their source code, scripts and unit files. + # A list of all the runtime binaries that the systemd executables, tests and libraries are referencing in their source code, scripts and unit files. # As soon as a dependency isn't required anymore we should remove it from the list. The `where` attribute for each of the replacement patterns must be exhaustive. If another (unhandled) case is found in the source code the build fails with an error message. binaryReplacements = [ { search = "/usr/bin/getent"; replacement = "${getent}/bin/getent"; where = [ "src/nspawn/nspawn-setuid.c" ]; } @@ -578,7 +578,7 @@ stdenv.mkDerivation { "src/import/import-tar.c" ]; ignore = [ - # occurences here refer to the tar sub command + # occurrences here refer to the tar sub command "src/sysupdate/sysupdate-resource.c" "src/sysupdate/sysupdate-transfer.c" "src/import/pull.c" diff --git a/third_party/nixpkgs/pkgs/os-specific/linux/tuxedo-keyboard/default.nix b/third_party/nixpkgs/pkgs/os-specific/linux/tuxedo-keyboard/default.nix index f122aaf641..effba31ef8 100644 --- a/third_party/nixpkgs/pkgs/os-specific/linux/tuxedo-keyboard/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/linux/tuxedo-keyboard/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "tuxedo-keyboard-${kernel.version}"; - version = "3.0.9"; + version = "3.1.1"; src = fetchFromGitHub { owner = "tuxedocomputers"; repo = "tuxedo-keyboard"; rev = "v${version}"; - sha256 = "HGN2CKJ76FzgKkOsU5pLMsRl7hEGMcZ8Loa2YP0P558="; + sha256 = "+59/5vfwx9fys7Q63SahVPS/ckvwkr4w6T37UqAnwZ4="; }; buildInputs = [ linuxHeaders ]; @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { installPhase = '' mkdir -p "$out/lib/modules/${kernel.modDirVersion}" - for module in clevo_acpi.ko clevo_wmi.ko tuxedo_keyboard.ko tuxedo_io/tuxedo_io.ko; do + for module in clevo_acpi.ko clevo_wmi.ko tuxedo_keyboard.ko tuxedo_io/tuxedo_io.ko uniwill_wmi.ko; do mv src/$module $out/lib/modules/${kernel.modDirVersion} done ''; diff --git a/third_party/nixpkgs/pkgs/os-specific/solo5/default.nix b/third_party/nixpkgs/pkgs/os-specific/solo5/default.nix index 87e9925555..08c9f223ef 100644 --- a/third_party/nixpkgs/pkgs/os-specific/solo5/default.nix +++ b/third_party/nixpkgs/pkgs/os-specific/solo5/default.nix @@ -34,6 +34,9 @@ in stdenv.mkDerivation { enableParallelBuilding = true; + separateDebugInfo = true; + # debugging requires information for both the unikernel and the tender + installPhase = '' runHook preInstall export DESTDIR=$out diff --git a/third_party/nixpkgs/pkgs/servers/adminer/default.nix b/third_party/nixpkgs/pkgs/servers/adminer/default.nix index 8138e6de96..e77aac2664 100644 --- a/third_party/nixpkgs/pkgs/servers/adminer/default.nix +++ b/third_party/nixpkgs/pkgs/servers/adminer/default.nix @@ -33,9 +33,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/third_party/nixpkgs/pkgs/servers/akkoma/admin-fe/default.nix b/third_party/nixpkgs/pkgs/servers/akkoma/admin-fe/default.nix new file mode 100644 index 0000000000..9b75d1e0db --- /dev/null +++ b/third_party/nixpkgs/pkgs/servers/akkoma/admin-fe/default.nix @@ -0,0 +1,84 @@ +{ lib +, stdenv +, fetchFromGitea, fetchYarnDeps +, fixup_yarn_lock, yarn, nodejs +, python3, pkg-config, libsass +}: + +stdenv.mkDerivation rec { + pname = "admin-fe"; + version = "unstable-2022-09-10"; + + src = fetchFromGitea { + domain = "akkoma.dev"; + owner = "AkkomaGang"; + repo = "admin-fe"; + rev = "e094e12c3ecb540df839fdf20c5a03d10454fcad"; + hash = "sha256-dqkW8p4x+5z1Hd8gp8V4+DsLm8EspVwPXDxtvlp1AIk="; + }; + + patches = [ ./deps.patch ]; + + offlineCache = fetchYarnDeps { + yarnLock = ./yarn.lock; + hash = "sha256-h+QUBT2VwPWu2l05Zkcp+0vHN/x40uXxw2KYjq7l/Xk="; + }; + + nativeBuildInputs = [ + fixup_yarn_lock + yarn + nodejs + pkg-config + python3 + libsass + ]; + + postPatch = '' + cp ${./yarn.lock} yarn.lock + ''; + + configurePhase = '' + runHook preConfigure + + export HOME="$(mktemp -d)" + + yarn config --offline set yarn-offline-mirror ${lib.escapeShellArg offlineCache} + fixup_yarn_lock yarn.lock + + yarn install --offline --frozen-lockfile --ignore-platform --ignore-scripts --no-progress --non-interactive + patchShebangs node_modules/cross-env + + mkdir -p "$HOME/.node-gyp/${nodejs.version}" + echo 9 >"$HOME/.node-gyp/${nodejs.version}/installVersion" + ln -sfv "${nodejs}/include" "$HOME/.node-gyp/${nodejs.version}" + export npm_config_nodedir=${nodejs} + + runHook postConfigure + ''; + + buildPhase = '' + runHook preBuild + + pushd node_modules/node-sass + LIBSASS_EXT=auto yarn run build --offline + popd + + export NODE_OPTIONS="--openssl-legacy-provider" + yarn run build:prod --offline + + runHook postBuild + ''; + + installPhase = '' + runHook preInstall + cp -R -v dist $out + runHook postInstall + ''; + + meta = with lib; { + description = "Admin interface for Akkoma"; + homepage = "https://akkoma.dev/AkkomaGang/akkoma-fe/"; + license = licenses.agpl3; + maintainers = with maintainers; [ mvs ]; + }; +} diff --git a/third_party/nixpkgs/pkgs/servers/akkoma/admin-fe/deps.patch b/third_party/nixpkgs/pkgs/servers/akkoma/admin-fe/deps.patch new file mode 100644 index 0000000000..35e1efdff8 --- /dev/null +++ b/third_party/nixpkgs/pkgs/servers/akkoma/admin-fe/deps.patch @@ -0,0 +1,46 @@ +diff --git a/package.json b/package.json +index f267be19..fb806527 100644 +--- a/package.json ++++ b/package.json +@@ -31,14 +31,12 @@ + "type": "git", + "url": "git+https://akkoma.dev/AkkomaGang/admin-fe.git" + }, +- "resolutions": { +- "prosemirror-model": "1.9.1" +- }, + "bugs": { + "url": "https://akkoma.dev/AkkomaGang/admin-fe/-/issues" + }, + "dependencies": { + "@babel/runtime": "^7.3.4", ++ "@toast-ui/editor": "^3.2.0", + "axios": "0.18.0", + "clipboard": "1.7.1", + "codemirror": "5.39.2", +@@ -65,7 +63,6 @@ + "sortablejs": "1.7.0", + "tiptap": "^1.29.6", + "tiptap-extensions": "^1.32.7", +- "tui-editor": "1.2.7", + "vue": "^2.6.8", + "vue-count-to": "1.0.13", + "vue-i18n": "^8.9.0", +diff --git a/src/components/element-ui/MarkdownEditor/index.vue b/src/components/element-ui/MarkdownEditor/index.vue +index 7ae9fd40..18114701 100644 +--- a/src/components/element-ui/MarkdownEditor/index.vue ++++ b/src/components/element-ui/MarkdownEditor/index.vue +@@ -5,10 +5,10 @@ +