{ lib, buildPythonPackage, fetchFromGitHub, setuptools, looseversion, mmtf-python, nose, numpy, pandas, pytestCheckHook, pythonOlder, }: buildPythonPackage rec { pname = "biopandas"; version = "0.5.0"; pyproject = true; src = fetchFromGitHub { owner = "BioPandas"; repo = "biopandas"; rev = "refs/tags/v${version}"; hash = "sha256-1c78baBBsDyvAWrNx5mZI/Q75wyXv0DAwAdWm3EwX/I="; }; pythonRelaxDeps = [ "looseversion" ]; build-system = [ setuptools ]; dependencies = [ numpy pandas mmtf-python looseversion ]; # tests rely on nose # resolved in 0.5.1: https://github.com/BioPandas/biopandas/commit/67aa2f237c70c826cd9ab59d6ae114582da2112f doCheck = pythonOlder "3.12"; nativeCheckInputs = [ nose pytestCheckHook ]; disabledTests = [ # require network access "test_mmcif_pdb_conversion" "test_fetch_pdb" "test_write_mmtf_bp" "test_write_mmtf" "test_b_factor_shift" ]; pythonImportsCheck = [ "biopandas" ]; meta = { description = "Working with molecular structures in pandas DataFrames"; homepage = "https://github.com/BioPandas/biopandas"; changelog = "https://github.com/BioPandas/biopandas/releases/tag/${src.rev}"; license = lib.licenses.bsd3; maintainers = with lib.maintainers; [ natsukium ]; }; }