{ lib , fetchPypi , buildPythonPackage , pythonOlder , oldest-supported-numpy , setuptools , wheel , numpy , hdf5 , cython , pkgconfig , mpi4py ? null , openssh , pytestCheckHook , cached-property }: assert hdf5.mpiSupport -> mpi4py != null && hdf5.mpi == mpi4py.mpi; let mpi = hdf5.mpi; mpiSupport = hdf5.mpiSupport; in buildPythonPackage rec { version = "3.9.0"; pname = "h5py"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; hash = "sha256-5gTbZSHB42fGvX+tI5yEf1PMRmRvLSZRNy0Frl6V+Bc="; }; # avoid strict pinning of numpy postPatch = '' substituteInPlace setup.py \ --replace "mpi4py ==" "mpi4py >=" ''; HDF5_DIR = "${hdf5}"; HDF5_MPI = if mpiSupport then "ON" else "OFF"; postConfigure = '' # Needed to run the tests reliably. See: # https://bitbucket.org/mpi4py/mpi4py/issues/87/multiple-test-errors-with-openmpi-30 ${lib.optionalString mpiSupport "export OMPI_MCA_rmaps_base_oversubscribe=yes"} ''; preBuild = lib.optionalString mpiSupport "export CC=${mpi}/bin/mpicc"; nativeBuildInputs = [ cython oldest-supported-numpy pkgconfig setuptools wheel ]; buildInputs = [ hdf5 ] ++ lib.optional mpiSupport mpi; propagatedBuildInputs = [ numpy ] ++ lib.optionals mpiSupport [ mpi4py openssh ] ++ lib.optionals (pythonOlder "3.8") [ cached-property ]; # tests now require pytest-mpi, which isn't available and difficult to package doCheck = false; nativeCheckInputs = [ pytestCheckHook openssh ]; pythonImportsCheck = [ "h5py" ]; meta = with lib; { changelog = "https://github.com/h5py/h5py/blob/${version}/docs/whatsnew/${lib.versions.majorMinor version}.rst"; description = "Pythonic interface to the HDF5 binary data format"; homepage = "http://www.h5py.org/"; license = licenses.bsd3; maintainers = [ ]; }; }