{ lib , stdenv , fetchFromGitHub , cmake , blas , superlu , suitesparse , python3 , libintl , libiconv }: let # this is a fork version of fetk (http://www.fetk.org/) # which is maintained by apbs team fetk = stdenv.mkDerivation (finalAttrs: { pname = "fetk"; version = "1.9.3"; src = fetchFromGitHub { owner = "Electrostatics"; repo = "fetk"; rev = "refs/tags/${finalAttrs.version}"; hash = "sha256-uFA1JRR05cNcUGaJj9IyGNONB2hU9IOBPzOj/HucNH4="; }; nativeBuildInputs = [ cmake ]; cmakeFlags = [ "-DBLAS_LIBRARIES=${blas}/lib" "-DBLA_STATIC=OFF" "-DBUILD_SUPERLU=OFF" ]; buildInputs = [ blas superlu suitesparse ]; meta = with lib; { description = "Fork of the Finite Element ToolKit from fetk.org"; homepage = "https://github.com/Electrostatics/FETK"; changelog = "https://github.com/Electrostatics/FETK/releases/tag/${finalAttrs.version}"; license = licenses.lgpl21Plus; maintainers = with maintainers; [ natsukium ]; platforms = platforms.unix; }; }); in stdenv.mkDerivation (finalAttrs: { pname = "apbs"; version = "3.4.1"; src = fetchFromGitHub { owner = "Electrostatics"; repo = "apbs"; rev = "refs/tags/v${finalAttrs.version}"; hash = "sha256-2DnHU9hMDl4OJBaTtcRiB+6R7gAeFcuOUy7aI63A3gQ="; }; postPatch = '' # ImportFETK.cmake downloads source and builds fetk substituteInPlace CMakeLists.txt \ --replace "include(ImportFETK)" "" \ --replace 'import_fetk(''${FETK_VERSION})' "" ''; nativeBuildInputs = [ cmake ]; buildInputs = [ fetk suitesparse blas python3 ] ++ lib.optionals stdenv.isDarwin [ libintl libiconv ]; cmakeFlags = [ "-DPYTHON_VERSION=${python3.version}" "-DAPBS_LIBS=mc;maloc" "-DCMAKE_MODULE_PATH=${fetk}/share/fetk/cmake;" "-DENABLE_TESTS=1" ]; doCheck = true; meta = with lib; { description = "Software for biomolecular electrostatics and solvation calculations"; homepage = "https://www.poissonboltzmann.org/"; changelog = "https://github.com/Electrostatics/apbs/releases/tag/v${finalAttrs.version}"; license = licenses.bsd3; maintainers = with maintainers; [ natsukium ]; platforms = platforms.unix; }; })