{ stdenv , fetchFromGitHub , fetchpatch }: # This file is responsible for fetching the sage source and adding necessary patches. # It does not actually build anything, it just copies the patched sources to $out. # This is done because multiple derivations rely on these sources and they should # all get the same sources with the same patches applied. stdenv.mkDerivation rec { version = "10.0"; pname = "sage-src"; src = fetchFromGitHub { owner = "sagemath"; repo = "sage"; rev = version; sha256 = "sha256-zN/Lo/GBCjYGemuaYpgG3laufN8te3wPjXMQ+Me9zgY="; }; # Patches needed because of particularities of nix or the way this is packaged. # The goal is to upstream all of them and get rid of this list. nixPatches = [ # Parallelize docubuild using subprocesses, fixing an isolation issue. See # https://groups.google.com/forum/#!topic/sage-packaging/YGOm8tkADrE ./patches/sphinx-docbuild-subprocesses.patch # After updating smypow to (https://github.com/sagemath/sage/issues/3360) # we can now set the cache dir to be within the .sage directory. This is # not strictly necessary, but keeps us from littering in the user's HOME. ./patches/sympow-cache.patch ]; # Since sage unfortunately does not release bugfix releases, packagers must # fix those bugs themselves. This is for critical bugfixes, where "critical" # == "causes (transient) doctest failures / somebody complained". bugfixPatches = [ # Sage uses mixed integer programs (MIPs) to find edge disjoint # spanning trees. For some reason, aarch64 glpk takes much longer # than x86_64 glpk to solve such MIPs. Since the MIP formulation # has "numerous problems" and will be replaced by a polynomial # algorithm soon, disable this test for now. # https://github.com/sagemath/sage/issues/34575 ./patches/disable-slow-glpk-test.patch ]; # Patches needed because of package updates. We could just pin the versions of # dependencies, but that would lead to rebuilds, confusion and the burdons of # maintaining multiple versions of dependencies. Instead we try to make sage # compatible with never dependency versions when possible. All these changes # should come from or be proposed to upstream. This list will probably never # be empty since dependencies update all the time. packageUpgradePatches = [ # https://github.com/sagemath/sage/pull/35584, landed in 10.1.beta1 (fetchpatch { name = "networkx-3.1-upgrade.patch"; url = "https://github.com/sagemath/sage/commit/be0aab74fd7e399e146988ef27260d2837baebae.diff"; sha256 = "sha256-xBGrylNaiF7CpfmX9/4lTioP2LSYKoRCkKlKSGZuv9U="; }) # https://github.com/sagemath/sage/pull/35612, landed in 10.1.beta1 (fetchpatch { name = "linbox-1.7-upgrade.patch"; url = "https://github.com/sagemath/sage/commit/35cbd2f2a2c4c355455d39b1424f05ea0aa4349b.diff"; sha256 = "sha256-/TpvIQZUqmbUuz6wvp3ni9oRir5LBA2FKDJcmnHI1r4="; }) # https://github.com/sagemath/sage/pull/35619, landed in 10.1.beta1 (fetchpatch { name = "maxima-5.46.0-upgrade.patch"; url = "https://github.com/sagemath/sage/commit/4ddf9328e7598284d4bc03cd2ed890f0be6b6399.diff"; sha256 = "sha256-f6YaZiLSj+E0LJMsMZHDt6vecWffSAuUHYVkegBEhno="; }) # https://github.com/sagemath/sage/pull/35635, landed in 10.1.beta1 (fetchpatch { name = "sympy-1.12-upgrade.patch"; url = "https://github.com/sagemath/sage/commit/1a73b3bbbfa0f4a297e05d49305070e1ed5ae598.diff"; sha256 = "sha256-k8Oam+EiRcfXC7qCdLacCx+7vpUAw2K1wsjKcQbeGb4="; }) # https://github.com/sagemath/sage/pull/35826, landed in 10.1.beta5 (fetchpatch { name = "numpy-1.25.0-upgrade.patch"; url = "https://github.com/sagemath/sage/commit/ecfe06b8f1fe729b07e885f0de55244467e5c137.diff"; sha256 = "sha256-G0xhl+LyNdDYPzRqSHK3fHaepcIzpuwmqRiussraDf0="; }) # https://github.com/sagemath/sage/pull/35826#issuecomment-1658569891 ./patches/numpy-1.25-deprecation.patch # https://github.com/sagemath/sage/pull/35842, landed in 10.1.beta5 (fetchpatch { name = "scipy-1.11-upgrade.patch"; url = "https://github.com/sagemath/sage/commit/90ece168c3c61508baa36659b0027b7dd8b43add.diff"; sha256 = "sha256-Y5TmuJcUJR+veb2AuSVODGs+xkVV+pTM8fWTm4q+NDs="; }) # https://github.com/sagemath/sage/pull/35825, landed in 10.1.beta6 (fetchpatch { name = "singular-4.3.2p2-upgrade.patch"; url = "https://github.com/sagemath/sage/commit/1a1b49f814cdf4c4c8d0ac8930610f3fef6af5b0.diff"; sha256 = "sha256-GqMgoi0tsP7zcCcPumhdsbvhPB6fgw1ufx6gHlc6iSc="; }) # https://github.com/sagemath/sage/pull/36006, positively reviewed (fetchpatch { name = "gmp-6.3-upgrade.patch"; url = "https://github.com/sagemath/sage/commit/d88bc3815c0901bfdeaa3e4a31107c084199f614.diff"; sha256 = "sha256-dXaEwk2wXxmx02sCw4Vu9mF0ZrydhFD4LRwNAiQsPgM="; }) ]; patches = nixPatches ++ bugfixPatches ++ packageUpgradePatches; # do not create .orig backup files if patch applies with fuzz patchFlags = [ "--no-backup-if-mismatch" "-p1" ]; postPatch = '' # Make sure sage can at least be imported without setting any environment # variables. It won't be close to feature complete though. sed -i \ "s|var(\"SAGE_ROOT\".*|var(\"SAGE_ROOT\", \"$out\")|" \ src/sage/env.py ''; buildPhase = "# do nothing"; installPhase = '' cp -r . "$out" ''; }