{ stdenv, lib, buildPythonPackage, fetchPypi, isPyPy, R, libdeflate, rWrapper, rPackages, pcre, xz, bzip2, zlib, icu, ipython, jinja2, pytz, pandas, numpy, cffi, tzlocal, simplegeneric, pytestCheckHook, extraRPackages ? [ ], }: buildPythonPackage rec { version = "3.5.16"; format = "setuptools"; pname = "rpy2"; disabled = isPyPy; src = fetchPypi { inherit version pname; hash = "sha256-g34vdFg2WKXEwzl2GnP5Q08z75ztPjDGTadWIWXCgBs="; }; patches = [ # R_LIBS_SITE is used by the nix r package to point to the installed R libraries. # This patch sets R_LIBS_SITE when rpy2 is imported. ./rpy2-3.x-r-libs-site.patch ]; postPatch = '' substituteInPlace 'rpy2/rinterface_lib/embedded.py' --replace '@NIX_R_LIBS_SITE@' "$R_LIBS_SITE" substituteInPlace 'requirements.txt' --replace 'pytest' "" ''; buildInputs = [ pcre xz bzip2 zlib icu libdeflate ] ++ (with rPackages; [ # packages expected by the test framework ggplot2 dplyr RSQLite broom DBI dbplyr hexbin lazyeval lme4 tidyr ]) ++ extraRPackages ++ rWrapper.recommendedPackages; nativeBuildInputs = [ R # needed at setup time to detect R_HOME (alternatively set R_HOME explicitly) ]; propagatedBuildInputs = [ ipython jinja2 pytz pandas numpy cffi tzlocal simplegeneric ]; doCheck = !stdenv.hostPlatform.isDarwin; # https://github.com/rpy2/rpy2/issues/1111 disabledTests = [ "test_parse_incomplete_error" "test_parse_error" "test_parse_error_when_evaluting" ]; nativeCheckInputs = [ pytestCheckHook ]; meta = { homepage = "https://rpy2.github.io/"; description = "Python interface to R"; license = lib.licenses.gpl2Plus; platforms = lib.platforms.unix; maintainers = with lib.maintainers; [ joelmo ]; }; }