{ stdenv , fetchFromGitHub , fetchpatch , fetchurl }: # This file is responsible for fetching the sage source and adding necessary patches. # It does not actually build anything, it just copies the patched sources to $out. # This is done because multiple derivations rely on these sources and they should # all get the same sources with the same patches applied. stdenv.mkDerivation rec { version = "10.3"; pname = "sage-src"; src = fetchFromGitHub { owner = "sagemath"; repo = "sage"; rev = version; hash = "sha256-OHtMv8t0RrP6R8XIREU+C1vpazeQLWa75wx9Mv6BN1U="; }; # contains essential files (e.g., setup.cfg) generated by the bootstrap script. # TODO: investigate https://github.com/sagemath/sage/pull/35950 configure-src = fetchurl { # the hash below is the tagged commit's _parent_. it can also be found by looking for # the "configure" asset at https://github.com/sagemath/sage/releases/tag/${version} url = "mirror://sageupstream/configure/configure-ab1a517b64b02bf15bbcb8d7c2d4d643bd5eff9b.tar.gz"; hash = "sha256-pe9AxTM+gFSR4/eVfUzay+4bwjoubbYeDPc+avKjlaw="; }; # Patches needed because of particularities of nix or the way this is packaged. # The goal is to upstream all of them and get rid of this list. nixPatches = [ # Parallelize docubuild using subprocesses, fixing an isolation issue. See # https://groups.google.com/forum/#!topic/sage-packaging/YGOm8tkADrE ./patches/sphinx-docbuild-subprocesses.patch # After updating smypow to (https://github.com/sagemath/sage/issues/3360) # we can now set the cache dir to be within the .sage directory. This is # not strictly necessary, but keeps us from littering in the user's HOME. ./patches/sympow-cache.patch ]; # Since sage unfortunately does not release bugfix releases, packagers must # fix those bugs themselves. This is for critical bugfixes, where "critical" # == "causes (transient) doctest failures / somebody complained". bugfixPatches = [ # Sage uses mixed integer programs (MIPs) to find edge disjoint # spanning trees. For some reason, aarch64 glpk takes much longer # than x86_64 glpk to solve such MIPs. Since the MIP formulation # has "numerous problems" and will be replaced by a polynomial # algorithm soon, disable this test for now. # https://github.com/sagemath/sage/issues/34575 ./patches/disable-slow-glpk-test.patch # https://github.com/sagemath/sage/pull/37489, landed in 10.4.beta1 (fetchpatch { name = "quaternionalgebra-random-failure.patch"; url = "https://github.com/sagemath/sage/commit/1c3f991b9d3c5778e409e5414c6cfcd456113f19.diff"; hash = "sha256-uCXchYx26DdxTjR1k2748KCEHPnekKS2fAM7SpyhNvM="; }) # https://github.com/sagemath/sage/pull/37763 (fetchpatch { name = "scipy-fault-tolerance.patch"; url = "https://github.com/sagemath/sage/commit/547d502ed56f9fd44eb5d9b4ee0824746c60fef7.diff"; hash = "sha256-PR4przrZ3ieHaW2nSY7l7VhNfrUupu9yCIrXpeyoAgg="; }) ]; # Patches needed because of package updates. We could just pin the versions of # dependencies, but that would lead to rebuilds, confusion and the burdons of # maintaining multiple versions of dependencies. Instead we try to make sage # compatible with never dependency versions when possible. All these changes # should come from or be proposed to upstream. This list will probably never # be empty since dependencies update all the time. packageUpgradePatches = [ # https://github.com/sagemath/sage/pull/37492 (fetchpatch { name = "singular-4.3.2p14-upgrade.patch"; url = "https://github.com/sagemath/sage/commit/a0c56816b051e97da44ac0a4e4d4f6915cf7fa0f.diff"; sha256 = "sha256-WGMmPeBoj2LUC+2qxWuaJL89QUuGt6axGvxWkpM9LYg="; }) ]; patches = nixPatches ++ bugfixPatches ++ packageUpgradePatches; # do not create .orig backup files if patch applies with fuzz patchFlags = [ "--no-backup-if-mismatch" "-p1" ]; postPatch = '' # Make sure sage can at least be imported without setting any environment # variables. It won't be close to feature complete though. sed -i \ "s|var(\"SAGE_ROOT\".*|var(\"SAGE_ROOT\", \"$out\")|" \ src/sage/env.py # sage --docbuild unsets JUPYTER_PATH, which breaks our docbuilding # https://trac.sagemath.org/ticket/33650#comment:32 sed -i "/export JUPYTER_PATH/d" src/bin/sage ''; buildPhase = "# do nothing"; installPhase = '' cp -r . "$out" tar xkzf ${configure-src} -C "$out" rm "$out/configure" ''; }