{ lib, stdenv, fetchFromGitHub, installShellFiles, python3, git, git-annex, p7zip, curl, coreutils, }: python3.pkgs.buildPythonApplication rec { pname = "datalad"; version = "1.1.1"; src = fetchFromGitHub { owner = "datalad"; repo = pname; rev = "refs/tags/${version}"; hash = "sha256-Vw/RpMf+jnUijJ3GZ9nLk1IRWOADmM+jNtYl5Ba6uLg="; }; postPatch = '' substituteInPlace datalad/distribution/create_sibling.py \ --replace-fail "/bin/ls" "${coreutils}/bin/ls" ''; nativeBuildInputs = [ installShellFiles git ]; build-system = [ python3.pkgs.setuptools ]; dependencies = with python3.pkgs; [ # core platformdirs chardet iso8601 humanize fasteners packaging patool tqdm annexremote looseversion setuptools git-annex # downloaders-extra # requests-ftp # not in nixpkgs yet # downloaders boto3 keyrings-alt keyring msgpack requests # publish python-gitlab # misc argcomplete pyperclip python-dateutil # duecredit duecredit # python>=3.8 distro ] ++ lib.optionals stdenv.hostPlatform.isWindows [ colorama ] ++ lib.optionals (python3.pythonOlder "3.9") [ importlib-resources ] ++ lib.optionals (python3.pythonOlder "3.10") [ importlib-metadata ] ++ lib.optionals (python3.pythonOlder "3.11") [ typing_extensions ]; postInstall = '' installShellCompletion --cmd datalad \ --bash <($out/bin/datalad shell-completion) \ --zsh <($out/bin/datalad shell-completion) wrapProgram $out/bin/datalad --prefix PYTHONPATH : "$PYTHONPATH" ''; preCheck = '' export HOME=$TMPDIR ''; # tests depend on apps in $PATH which only will get installed after the test disabledTests = [ # No such file or directory: 'datalad' "test_script_shims" "test_cfg_override" "test_completion" "test_nested_pushclone_cycle_allplatforms" "test_create_sub_gh3463" "test_create_sub_dataset_dot_no_path" "test_cfg_passthrough" "test_addurls_stdin_input_command_line" "test_run_datalad_help" "test_status_custom_summary_no_repeats" "test_quoting" # No such file or directory: 'git-annex-remote-[...]" "test_create" "test_ensure_datalad_remote_maybe_enable" # "git-annex: unable to use external special remote git-annex-remote-datalad" "test_ria_postclonecfg" "test_ria_postclone_noannex" "test_ria_push" "test_basic_scenario" "test_annex_get_from_subdir" "test_ensure_datalad_remote_init_and_enable_needed" "test_ensure_datalad_remote_maybe_enable[False]" "test_ensure_datalad_remote_maybe_enable[True]" "test_create_simple" "test_create_alias" "test_storage_only" "test_initremote" "test_read_access" "test_ephemeral" "test_initremote_basic_fileurl" "test_initremote_basic_httpurl" "test_remote_layout" "test_version_check" "test_gitannex_local" "test_push_url" "test_url_keys" "test_obtain_permission_root" "test_source_candidate_subdataset" "test_update_fetch_all" "test_add_archive_dirs" "test_add_archive_content" "test_add_archive_content_strip_leading" "test_add_archive_content_zip" "test_add_archive_content_absolute_path" "test_add_archive_use_archive_dir" "test_add_archive_single_file" "test_add_delete" "test_add_archive_leading_dir" "test_add_delete_after_and_drop" "test_add_delete_after_and_drop_subdir" "test_override_existing_under_git" "test_copy_file_datalad_specialremote" "test_download_url_archive" "test_download_url_archive_from_subdir" "test_download_url_archive_trailing_separator" "test_download_url_need_datalad_remote" "test_datalad_credential_helper - assert False" # need internet access "test_clone_crcns" "test_clone_datasets_root" "test_reckless" "test_autoenabled_remote_msg" "test_ria_http_storedataladorg" "test_gin_cloning" "test_nonuniform_adjusted_subdataset" "test_install_datasets_root" "test_install_simple_local" "test_install_dataset_from_just_source" "test_install_dataset_from_just_source_via_path" "test_datasets_datalad_org" "test_get_cached_dataset" "test_cached_dataset" "test_cached_url" "test_anonymous_s3" "test_protocols" "test_get_versioned_url_anon" "test_install_recursive_github" "test_failed_install_multiple" # pbcopy not found "test_wtf" ]; nativeCheckInputs = [ p7zip python3.pkgs.pytestCheckHook git-annex curl python3.pkgs.httpretty ]; pythonImportsCheck = [ "datalad" ]; meta = { description = "Keep code, data, containers under control with git and git-annex"; homepage = "https://www.datalad.org"; license = lib.licenses.mit; maintainers = with lib.maintainers; [ renesat ]; }; }