{ lib, buildPythonPackage, pythonOlder, fetchFromGitHub, pytestCheckHook, aiohttp, dask, distributed, fsspec, numpy, requests, scikit-image, toolz, zarr, }: buildPythonPackage rec { pname = "ome-zarr"; version = "0.9.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "ome"; repo = "ome-zarr-py"; rev = "refs/tags/v${version}"; hash = "sha256-YOG9+ONf2OnkSZBL/Vb8Inebx4XDSGJb2fqypaWebhY="; }; propagatedBuildInputs = [ numpy dask distributed zarr fsspec aiohttp requests scikit-image toolz ] ++ fsspec.optional-dependencies.s3; nativeCheckInputs = [ pytestCheckHook ]; disabledTests = [ # attempts to access network "test_s3_info" ]; pytestFlagsArray = [ # Fail with RecursionError # https://github.com/ome/ome-zarr-py/issues/352 "--deselect=tests/test_cli.py::TestCli::test_astronaut_download" "--deselect=tests/test_cli.py::TestCli::test_astronaut_info" "--deselect=tests/test_cli.py::TestCli::test_coins_info" "--deselect=tests/test_emitter.py::test_close" "--deselect=tests/test_emitter.py::test_create_wrong_encoding" "--deselect=tests/test_node.py::TestNode::test_image" "--deselect=tests/test_node.py::TestNode::test_label" "--deselect=tests/test_node.py::TestNode::test_labels" "--deselect=tests/test_ome_zarr.py::TestOmeZarr::test_download" "--deselect=tests/test_ome_zarr.py::TestOmeZarr::test_info" "--deselect=tests/test_reader.py::TestReader::test_image" "--deselect=tests/test_reader.py::TestReader::test_label" "--deselect=tests/test_reader.py::TestReader::test_labels" "--deselect=tests/test_starting_points.py::TestStartingPoints::test_label" "--deselect=tests/test_starting_points.py::TestStartingPoints::test_labels" "--deselect=tests/test_starting_points.py::TestStartingPoints::test_top_level" ]; pythonImportsCheck = [ "ome_zarr" "ome_zarr.cli" "ome_zarr.csv" "ome_zarr.data" "ome_zarr.format" "ome_zarr.io" "ome_zarr.reader" "ome_zarr.writer" "ome_zarr.scale" "ome_zarr.utils" ]; meta = with lib; { description = "Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud"; homepage = "https://pypi.org/project/ome-zarr"; changelog = "https://github.com/ome/ome-zarr-py/blob/v${version}/CHANGELOG.md"; license = licenses.bsd2; maintainers = [ maintainers.bcdarwin ]; mainProgram = "ome_zarr"; }; }