{ lib , stdenv , fetchPypi , fetchpatch , python , buildPythonPackage , gfortran , hypothesis , pytest , typing-extensions , blas , lapack , writeTextFile , cython , pythonAtLeast , pythonOlder }: assert (!blas.isILP64) && (!lapack.isILP64); let cfg = writeTextFile { name = "site.cfg"; text = lib.generators.toINI {} { ${blas.implementation} = { include_dirs = "${lib.getDev blas}/include:${lib.getDev lapack}/include"; library_dirs = "${blas}/lib:${lapack}/lib"; runtime_library_dirs = "${blas}/lib:${lapack}/lib"; libraries = "lapack,lapacke,blas,cblas"; }; lapack = { include_dirs = "${lib.getDev lapack}/include"; library_dirs = "${lapack}/lib"; runtime_library_dirs = "${lapack}/lib"; }; blas = { include_dirs = "${lib.getDev blas}/include"; library_dirs = "${blas}/lib"; runtime_library_dirs = "${blas}/lib"; }; }; }; in buildPythonPackage rec { pname = "numpy"; version = "1.25.1"; format = "setuptools"; disabled = pythonOlder "3.9" || pythonAtLeast "3.12"; src = fetchPypi { inherit pname version; extension = "tar.gz"; hash = "sha256-mjqfOmFIDMCGEXtCaovYaGnCE/xAcuYG8BxOS2brkr8="; }; patches = [ # f2py.f90mod_rules generates code with invalid function pointer conversions, which are # clang 16 makes an error by default. (fetchpatch { url = "https://github.com/numpy/numpy/commit/609fee4324f3521d81a3454f5fcc33abb0d3761e.patch"; hash = "sha256-6Dbmf/RWvQJPTIjvchVaywHGcKCsgap/0wAp5WswuCo="; }) # Disable `numpy/core/tests/test_umath.py::TestComplexFunctions::test_loss_of_precision[complex256]` # on x86_64-darwin because it fails under Rosetta 2 due to issues with trig functions and # 80-bit long double complex numbers. ./disable-failing-long-double-test-Rosetta-2.patch ] # We patch cpython/distutils to fix https://bugs.python.org/issue1222585 # Patching of numpy.distutils is needed to prevent it from undoing the # patch to distutils. ++ lib.optionals python.hasDistutilsCxxPatch [ ./numpy-distutils-C++.patch ]; postPatch = '' # fails with multiple errors because we are not using the pinned setuptools version # see https://github.com/numpy/numpy/blob/v1.25.0/pyproject.toml#L7 # error: option --single-version-externally-managed not recognized # TypeError: dist must be a Distribution instance rm numpy/core/tests/test_cython.py ''; nativeBuildInputs = [ gfortran cython ]; buildInputs = [ blas lapack ]; # Causes `error: argument unused during compilation: '-fno-strict-overflow'` due to `-Werror`. hardeningDisable = lib.optionals stdenv.cc.isClang [ "strictoverflow" ]; # we default openblas to build with 64 threads # if a machine has more than 64 threads, it will segfault # see https://github.com/xianyi/OpenBLAS/issues/2993 preConfigure = '' sed -i 's/-faltivec//' numpy/distutils/system_info.py export NPY_NUM_BUILD_JOBS=$NIX_BUILD_CORES export OMP_NUM_THREADS=$((NIX_BUILD_CORES > 64 ? 64 : NIX_BUILD_CORES)) ''; preBuild = '' ln -s ${cfg} site.cfg ''; enableParallelBuilding = true; nativeCheckInputs = [ pytest hypothesis typing-extensions ]; checkPhase = '' runHook preCheck pushd "$out" ${python.interpreter} -c 'import numpy, sys; sys.exit(numpy.test("fast", verbose=10) is False)' popd runHook postCheck ''; passthru = { # just for backwards compatibility blas = blas.provider; blasImplementation = blas.implementation; inherit cfg; }; # Disable test # - test_large_file_support: takes a long time and can cause the machine to run out of disk space NOSE_EXCLUDE="test_large_file_support"; meta = { description = "Scientific tools for Python"; homepage = "https://numpy.org/"; license = lib.licenses.bsd3; maintainers = with lib.maintainers; [ fridh ]; }; }