{ lib, stdenv, fetchPypi, python, numpy_1, pythonAtLeast, pythonOlder, buildPythonPackage, writeTextFile, # build-system cython, gfortran, meson-python, mesonEmulatorHook, pkg-config, xcbuild, # native dependencies blas, lapack, # Reverse dependency sage, # tests hypothesis, pytest-xdist, pytestCheckHook, setuptools, typing-extensions, }: assert (!blas.isILP64) && (!lapack.isILP64); let cfg = writeTextFile { name = "site.cfg"; text = lib.generators.toINI { } { ${blas.implementation} = { include_dirs = "${lib.getDev blas}/include:${lib.getDev lapack}/include"; library_dirs = "${blas}/lib:${lapack}/lib"; runtime_library_dirs = "${blas}/lib:${lapack}/lib"; libraries = "lapack,lapacke,blas,cblas"; }; lapack = { include_dirs = "${lib.getDev lapack}/include"; library_dirs = "${lapack}/lib"; runtime_library_dirs = "${lapack}/lib"; }; blas = { include_dirs = "${lib.getDev blas}/include"; library_dirs = "${blas}/lib"; runtime_library_dirs = "${blas}/lib"; }; }; }; in buildPythonPackage rec { pname = "numpy"; version = "1.26.4"; pyproject = true; disabled = pythonOlder "3.9" || pythonAtLeast "3.13"; src = fetchPypi { inherit pname version; extension = "tar.gz"; hash = "sha256-KgKrqe0S5KxOs+qUIcQgMBoMZGDZgw10qd+H76SRIBA="; }; patches = [ # Disable `numpy/core/tests/test_umath.py::TestComplexFunctions::test_loss_of_precision[complex256]` # on x86_64-darwin because it fails under Rosetta 2 due to issues with trig functions and # 80-bit long double complex numbers. ./disable-failing-long-double-test-Rosetta-2.patch ] # We patch cpython/distutils to fix https://bugs.python.org/issue1222585 # Patching of numpy.distutils is needed to prevent it from undoing the # patch to distutils. ++ lib.optionals python.hasDistutilsCxxPatch [ ./numpy-distutils-C++.patch ]; postPatch = '' # fails with multiple errors because we are not using the pinned setuptools version # see https://github.com/numpy/numpy/blob/v1.25.0/pyproject.toml#L7 # error: option --single-version-externally-managed not recognized # TypeError: dist must be a Distribution instance rm numpy/core/tests/test_cython.py patchShebangs numpy/_build_utils/*.py # remove needless reference to full Python path stored in built wheel substituteInPlace numpy/meson.build \ --replace 'py.full_path()' "'python'" substituteInPlace pyproject.toml \ --replace-fail "meson-python>=0.15.0,<0.16.0" "meson-python" ''; nativeBuildInputs = [ cython gfortran meson-python pkg-config ] ++ lib.optionals (stdenv.hostPlatform.isDarwin) [ xcbuild.xcrun ] ++ lib.optionals (!stdenv.buildPlatform.canExecute stdenv.hostPlatform) [ mesonEmulatorHook ]; buildInputs = [ blas lapack ]; # Causes `error: argument unused during compilation: '-fno-strict-overflow'` due to `-Werror`. hardeningDisable = lib.optionals stdenv.cc.isClang [ "strictoverflow" ]; # we default openblas to build with 64 threads # if a machine has more than 64 threads, it will segfault # see https://github.com/OpenMathLib/OpenBLAS/issues/2993 preConfigure = '' sed -i 's/-faltivec//' numpy/distutils/system_info.py export OMP_NUM_THREADS=$((NIX_BUILD_CORES > 64 ? 64 : NIX_BUILD_CORES)) ''; # HACK: copy mesonEmulatorHook's flags to the variable used by meson-python postConfigure = '' mesonFlags="$mesonFlags ''${mesonFlagsArray[@]}" ''; preBuild = '' ln -s ${cfg} site.cfg ''; enableParallelBuilding = true; nativeCheckInputs = [ pytest-xdist pytestCheckHook hypothesis setuptools typing-extensions ]; preCheck = '' cd "$out" ''; # https://github.com/numpy/numpy/blob/a277f6210739c11028f281b8495faf7da298dbef/numpy/_pytesttester.py#L180 pytestFlagsArray = [ "-m" "not\\ slow" # fast test suite ]; # https://github.com/numpy/numpy/issues/24548 disabledTests = lib.optionals stdenv.hostPlatform.isi686 [ "test_new_policy" # AssertionError: assert False "test_identityless_reduction_huge_array" # ValueError: Maximum allowed dimension exceeded "test_float_remainder_overflow" # AssertionError: FloatingPointError not raised by divmod "test_int" # AssertionError: selectedintkind(19): expected 16 but got -1 ] ++ lib.optionals stdenv.hostPlatform.isAarch32 [ "test_impossible_feature_enable" # AssertionError: Failed to generate error "test_features" # AssertionError: Failure Detection "test_new_policy" # AssertionError: assert False "test_identityless_reduction_huge_array" # ValueError: Maximum allowed dimension exceeded "test_unary_spurious_fpexception" # AssertionError: Got warnings: [] "test_int" # AssertionError: selectedintkind(19): expected 16 but got -1 "test_real" # AssertionError: selectedrealkind(16): expected 10 but got -1 "test_quad_precision" # AssertionError: selectedrealkind(32): expected 16 but got -1 "test_big_arrays" # ValueError: array is too big; `arr.size * arr.dtype.itemsize` is larger tha... "test_multinomial_pvals_float32" # Failed: DID NOT RAISE ] ++ lib.optionals stdenv.hostPlatform.isAarch64 [ "test_big_arrays" # OOM on a 16G machine ] ++ lib.optionals (stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isx86_64) [ # can fail on virtualized machines confused over their cpu identity "test_dispatcher" ]; passthru = { # just for backwards compatibility blas = blas.provider; blasImplementation = blas.implementation; inherit cfg; coreIncludeDir = "${numpy_1}/${python.sitePackages}/numpy/core/include"; tests = { inherit sage; }; }; # Disable test # - test_large_file_support: takes a long time and can cause the machine to run out of disk space env.NOSE_EXCLUDE = "test_large_file_support"; meta = { changelog = "https://github.com/numpy/numpy/releases/tag/v${version}"; description = "Scientific tools for Python"; mainProgram = "f2py"; homepage = "https://numpy.org/"; license = lib.licenses.bsd3; }; }