{ lib, buildPythonPackage, fetchPypi, deprecated, hopcroftkarp, joblib, matplotlib, numpy, scikit-learn, scipy, pytestCheckHook, pythonAtLeast, pythonOlder, }: buildPythonPackage rec { pname = "persim"; version = "0.3.5"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; hash = "sha256-qyly3kIx9HQ7zDT0SfUlsqZGqibdXsfW1dL9HNpQZJg="; }; propagatedBuildInputs = [ deprecated hopcroftkarp joblib matplotlib numpy scikit-learn scipy ]; nativeCheckInputs = [ pytestCheckHook ]; preCheck = '' # specifically needed for darwin export HOME=$(mktemp -d) mkdir -p $HOME/.matplotlib echo "backend: ps" > $HOME/.matplotlib/matplotlibrc ''; pythonImportsCheck = [ "persim" ]; disabledTests = lib.optionals (pythonAtLeast "3.10") [ # AttributeError: module 'collections' has no attribute 'Iterable' "test_empyt_diagram_list" "test_empty_diagram_list" "test_fit_diagram" "test_integer_diagrams" "test_lists_of_lists" "test_mixed_pairs" "test_multiple_diagrams" "test_n_pixels" # https://github.com/scikit-tda/persim/issues/67 "test_persistenceimager" # ValueError: setting an array element with a sequence "test_exact_critical_pairs" ]; meta = with lib; { description = "Distances and representations of persistence diagrams"; homepage = "https://persim.scikit-tda.org"; changelog = "https://github.com/scikit-tda/persim/releases/tag/v${version}"; license = licenses.mit; maintainers = [ ]; }; }