40 lines
1.2 KiB
Nix
40 lines
1.2 KiB
Nix
{ stdenv, fetchpatch, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }:
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stdenv.mkDerivation rec {
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pname = "delly";
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version = "0.8.5";
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src = fetchFromGitHub {
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owner = "dellytools";
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repo = pname;
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rev = "v${version}";
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sha256 = "1af1y20hd8x2yvix0gjvx038w7chf4fiyr68ny5yvrx5b2gw0vbq";
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};
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buildInputs = [ zlib htslib bzip2 lzma ncurses boost ];
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EBROOTHTSLIB = htslib;
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installPhase = ''
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runHook preInstall
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install -Dm555 src/delly $out/bin/delly
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runHook postInstall
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'';
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meta = with stdenv.lib; {
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description = "Structural variant caller for mapped DNA sequenced data";
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license = licenses.bsd3;
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maintainers = with maintainers; [ scalavision ];
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platforms = platforms.linux;
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longDescription = ''
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Delly is an integrated structural variant (SV) prediction method
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that can discover, genotype and visualize deletions, tandem duplications,
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inversions and translocations at single-nucleotide resolution in
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short-read massively parallel sequencing data. It uses paired-ends,
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split-reads and read-depth to sensitively and accurately delineate
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genomic rearrangements throughout the genome.
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'';
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};
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}
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