116 lines
4 KiB
Nix
116 lines
4 KiB
Nix
{ version, rev, sourceSha256 }:
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{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake
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, expat, fftw, gdcm, hdf5-cpp, libjpeg, libminc, libtiff, libpng
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, libX11, libuuid, xz, vtk, zlib, Cocoa }:
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let
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itkGenericLabelInterpolatorSrc = fetchFromGitHub {
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owner = "InsightSoftwareConsortium";
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repo = "ITKGenericLabelInterpolator";
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rev = "2f3768110ffe160c00c533a1450a49a16f4452d9";
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hash = "sha256-Cm3jg14MMnbr/sP+gqR2Rh25xJjoRvpmY/jP/DKH978=";
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};
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itkAdaptiveDenoisingSrc = fetchFromGitHub {
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owner = "ntustison";
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repo = "ITKAdaptiveDenoising";
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rev = "24825c8d246e941334f47968553f0ae388851f0c";
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hash = "sha256-deJbza36c0Ohf9oKpO2T4po37pkyI+2wCSeGL4r17Go=";
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};
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itkSimpleITKFiltersSrc = fetchFromGitHub {
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owner = "InsightSoftwareConsortium";
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repo = "ITKSimpleITKFilters";
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rev = "bb896868fc6480835495d0da4356d5db009592a6";
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hash = "sha256-MfaIA0xxA/pzUBSwnAevr17iR23Bo5iQO2cSyknS3o4=";
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};
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in
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stdenv.mkDerivation {
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pname = "itk";
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inherit version;
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src = fetchFromGitHub {
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owner = "InsightSoftwareConsortium";
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repo = "ITK";
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inherit rev;
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sha256 = sourceSha256;
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};
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patches = [
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(fetchpatch {
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name = "fix-gcc13-build";
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url = "https://github.com/InsightSoftwareConsortium/ITK/commit/9a719a0d2f5f489eeb9351b0ef913c3693147a4f.patch";
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hash = "sha256-dDyqYOzo91afR8W7k2N64X6l7t6Ws1C9iuRkWHUe0fg=";
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})
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];
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postPatch = ''
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substituteInPlace CMake/ITKSetStandardCompilerFlags.cmake \
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--replace "-march=corei7" "" \
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--replace "-mtune=native" ""
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ln -sr ${itkGenericLabelInterpolatorSrc} Modules/External/ITKGenericLabelInterpolator
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ln -sr ${itkAdaptiveDenoisingSrc} Modules/External/ITKAdaptiveDenoising
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ln -sr ${itkSimpleITKFiltersSrc} Modules/External/ITKSimpleITKFilters
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'';
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cmakeFlags = [
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"-DBUILD_EXAMPLES=OFF"
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"-DBUILD_SHARED_LIBS=ON"
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"-DITK_FORBID_DOWNLOADS=ON"
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"-DITK_USE_SYSTEM_LIBRARIES=ON" # finds common libraries e.g. hdf5, libpng, libtiff, zlib, but not GDCM, NIFTI, MINC, etc.
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# note ITK_USE_SYSTEM_EIGEN, part of ITK_USE_SYSTEM_LIBRARIES,
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# causes "...-itk-5.2.1/include/ITK-5.2/itkSymmetricEigenAnalysis.h:23:31: fatal error: Eigen/Eigenvalues: No such file or directory"
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# when compiling c3d, but maybe an ITK 5.2/eigen version issue:
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"-DITK_USE_SYSTEM_EIGEN=OFF"
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"-DITK_USE_SYSTEM_GOOGLETEST=OFF" # ANTs build failure due to https://github.com/ANTsX/ANTs/issues/1489
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"-DITK_USE_SYSTEM_GDCM=ON"
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"-DITK_USE_SYSTEM_MINC=ON"
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"-DLIBMINC_DIR=${libminc}/lib/cmake"
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"-DModule_ITKMINC=ON"
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"-DModule_ITKIOMINC=ON"
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"-DModule_ITKIOTransformMINC=ON"
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"-DModule_SimpleITKFilters=ON"
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"-DModule_ITKVtkGlue=ON"
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"-DModule_ITKReview=ON"
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"-DModule_MGHIO=ON"
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"-DModule_AdaptiveDenoising=ON"
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"-DModule_GenericLabelInterpolator=ON"
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];
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nativeBuildInputs = [ cmake xz ];
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buildInputs = [
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libX11
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libuuid
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vtk
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] ++ lib.optionals stdenv.isDarwin [ Cocoa ];
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# Due to ITKVtkGlue=ON and the additional dependencies needed to configure VTK 9
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# (specifically libGL and libX11 on Linux),
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# it's now seemingly necessary for packages that configure ITK to
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# also include configuration deps of VTK, even if VTK is not required or available.
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# These deps were propagated from VTK 9 in https://github.com/NixOS/nixpkgs/pull/206935,
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# so we simply propagate them again from ITK.
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# This admittedly is a hack and seems like an issue with VTK 9's CMake configuration.
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propagatedBuildInputs = [
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# The dependencies we've un-vendored from ITK, such as GDCM, must be propagated,
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# otherwise other software built against ITK fails to configure since ITK headers
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# refer to these previously vendored libraries:
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expat
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fftw
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gdcm
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hdf5-cpp
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libjpeg
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libminc
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libpng
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libtiff
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zlib
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] ++ vtk.propagatedBuildInputs;
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meta = {
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description = "Insight Segmentation and Registration Toolkit";
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homepage = "https://www.itk.org";
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license = lib.licenses.asl20;
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maintainers = with lib.maintainers; [viric];
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};
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}
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