54 lines
1.1 KiB
Nix
54 lines
1.1 KiB
Nix
{ lib
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, buildPythonPackage
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, fetchPypi
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, pythonOlder
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, setuptools
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, numpy
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}:
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buildPythonPackage rec {
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pname = "biopython";
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version = "1.83";
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pyproject = true;
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disabled = pythonOlder "3.9";
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-eOa/t43mMDQDev01/nfLbgqeW2Jwa+z3in2SKxbtg/c=";
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};
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nativeBuildInputs = [
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setuptools
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];
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propagatedBuildInputs = [ numpy ];
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pythonImportsCheck = [
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"Bio"
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];
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checkPhase = ''
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runHook preCheck
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export HOME=$(mktemp -d)
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cd Tests
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python run_tests.py --offline
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runHook postCheck
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'';
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meta = {
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description = "Python library for bioinformatics";
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longDescription = ''
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Biopython is a set of freely available tools for biological computation
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written in Python by an international team of developers. It is a
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distributed collaborative effort to develop Python libraries and
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applications which address the needs of current and future work in
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bioinformatics.
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'';
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homepage = "https://biopython.org/wiki/Documentation";
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maintainers = with lib.maintainers; [ luispedro ];
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license = lib.licenses.bsd3;
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};
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}
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