117 lines
2.1 KiB
Nix
117 lines
2.1 KiB
Nix
{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, emcee
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, h5netcdf
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, matplotlib
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, netcdf4
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, numba
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, numpy
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, pandas
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, pytest
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, setuptools
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, cloudpickle
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, pytestCheckHook
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, scipy
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, packaging
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, typing-extensions
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, pythonOlder
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, xarray
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, xarray-einstats
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, zarr
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, ffmpeg
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, h5py
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, jaxlib
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, torchvision
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, jax
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# , pymc3 (circular dependency)
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, pyro-ppl
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#, pystan (not packaged)
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, numpyro
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, bokeh
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}:
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buildPythonPackage rec {
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pname = "arviz";
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version = "0.16.1";
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pyproject = true;
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disabled = pythonOlder "3.9";
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src = fetchFromGitHub {
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owner = "arviz-devs";
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repo = "arviz";
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rev = "refs/tags/v${version}";
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hash = "sha256-kixWGj0M0flTq5rXSiPB0nfZaGYRvvMBGAJpehdW8KY=";
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};
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propagatedBuildInputs = [
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h5netcdf
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matplotlib
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netcdf4
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numpy
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packaging
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pandas
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scipy
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setuptools
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xarray
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xarray-einstats
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];
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nativeCheckInputs = [
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cloudpickle
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emcee
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ffmpeg
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h5py
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jax
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jaxlib
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numba
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numpyro
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# pymc3 (circular dependency)
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pyro-ppl
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# pystan (not packaged)
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pytestCheckHook
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torchvision
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zarr
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bokeh
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];
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preCheck = ''
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export HOME=$(mktemp -d);
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'';
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pytestFlagsArray = [
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"arviz/tests/base_tests/"
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];
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disabledTests = [
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# Tests require network access
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"test_plot_separation"
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"test_plot_trace_legend"
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"test_cov"
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# countourpy is not available at the moment
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"test_plot_kde"
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"test_plot_kde_2d"
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"test_plot_pair"
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# Array mismatch
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"test_plot_ts"
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# The following two tests fail in a common venv-based setup.
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# An issue has been opened upstream: https://github.com/arviz-devs/arviz/issues/2282
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"test_plot_ppc_discrete"
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"test_plot_ppc_discrete_save_animation"
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# Assertion error
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"test_data_zarr"
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];
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pythonImportsCheck = [
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"arviz"
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];
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meta = with lib; {
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description = "Library for exploratory analysis of Bayesian models";
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homepage = "https://arviz-devs.github.io/arviz/";
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changelog = "https://github.com/arviz-devs/arviz/blob/v${version}/CHANGELOG.md";
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license = licenses.asl20;
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maintainers = with maintainers; [ omnipotententity ];
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};
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}
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