45 lines
1.3 KiB
Nix
45 lines
1.3 KiB
Nix
{ lib, python, fetchFromGitHub }:
|
|
with python.pkgs;
|
|
buildPythonApplication rec {
|
|
pname = "deepTools";
|
|
version = "3.5.4";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "deeptools";
|
|
repo = "deepTools";
|
|
rev = version;
|
|
sha256 = "sha256-A8YdlMptmJyxWW0EYLjXFIWjIO/mttEC7VYdlCe9MaI=";
|
|
};
|
|
|
|
format = "pyproject";
|
|
|
|
propagatedBuildInputs = [
|
|
numpy
|
|
numpydoc
|
|
scipy
|
|
py2bit
|
|
pybigwig
|
|
pysam
|
|
matplotlib
|
|
plotly
|
|
deeptoolsintervals
|
|
importlib-metadata
|
|
];
|
|
|
|
nativeCheckInputs = [ pytest ];
|
|
|
|
meta = with lib; {
|
|
homepage = "https://deeptools.readthedocs.io/en/develop";
|
|
description = "Tools for exploring deep DNA sequencing data";
|
|
longDescription = ''
|
|
deepTools contains useful modules to process the mapped reads data for multiple
|
|
quality checks, creating normalized coverage files in standard bedGraph and bigWig
|
|
file formats, that allow comparison between different files (for example, treatment and control).
|
|
Finally, using such normalized and standardized files, deepTools can create many
|
|
publication-ready visualizations to identify enrichments and for functional
|
|
annotations of the genome.
|
|
'';
|
|
license = with licenses; [ mit bsd3 ];
|
|
maintainers = with maintainers; [ scalavision ];
|
|
};
|
|
}
|