92 lines
1.9 KiB
Nix
92 lines
1.9 KiB
Nix
{ lib
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, fetchFromGitHub
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, git
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, nodejs
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, python3
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}:
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python3.pkgs.buildPythonApplication rec {
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pname = "cwltool";
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version = "3.1.20240112164112";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "common-workflow-language";
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repo = "cwltool";
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rev = "refs/tags/${version}";
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hash = "sha256-Y0DORypXlTDv04qh796oXPSTxCXGb7rLQ8Su+/As7Lo=";
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};
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postPatch = ''
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substituteInPlace setup.py \
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--replace "ruamel.yaml >= 0.16, < 0.19" "ruamel.yaml" \
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--replace "prov == 1.5.1" "prov" \
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--replace '"schema-salad >= 8.4.20230426093816, < 9",' "" \
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--replace "PYTEST_RUNNER + " ""
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substituteInPlace pyproject.toml \
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--replace "mypy==1.8.0" "mypy" \
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--replace "ruamel.yaml>=0.16.0,<0.18" "ruamel.yaml"
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'';
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nativeBuildInputs = [
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git
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] ++ (with python3.pkgs; [
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setuptools
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setuptools-scm
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]);
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propagatedBuildInputs = with python3.pkgs; [
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argcomplete
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bagit
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coloredlogs
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cwl-utils
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mypy
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mypy-extensions
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prov
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psutil
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pydot
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rdflib
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requests
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ruamel-yaml
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schema-salad
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shellescape
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spython
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toml
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types-psutil
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types-requests
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typing-extensions
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];
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nativeCheckInputs = with python3.pkgs; [
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mock
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nodejs
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pytest-mock
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pytest-httpserver
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pytest-xdist
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pytestCheckHook
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];
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disabledTests = [
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"test_content_types"
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"test_env_filtering"
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"test_http_path_mapping"
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"test_modification_date"
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];
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disabledTestPaths = [
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"tests/test_udocker.py"
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"tests/test_provenance.py"
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];
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pythonImportsCheck = [
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"cwltool"
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];
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meta = with lib; {
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description = "Common Workflow Language reference implementation";
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homepage = "https://www.commonwl.org";
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changelog = "https://github.com/common-workflow-language/cwltool/releases/tag/${version}";
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license = with licenses; [ asl20 ];
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maintainers = with maintainers; [ veprbl ];
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};
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}
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