46 lines
965 B
Nix
46 lines
965 B
Nix
{
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lib,
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stdenv,
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fetchurl,
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zlib,
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bzip2,
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cmake,
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python3,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "spades";
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version = "3.15.5";
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src = fetchurl {
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url = "https://github.com/ablab/spades/releases/download/v${finalAttrs.version}/SPAdes-${finalAttrs.version}.tar.gz";
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hash = "sha256-FVw2QNVx8uexmgUDHR/Q0ZvYLfeF04hw+5O9JBsSu/o=";
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};
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sourceRoot = "SPAdes-${finalAttrs.version}/src";
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env.CXXFLAGS = toString [
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# GCC 13: error: 'uint32_t' does not name a type
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"-include cstdint"
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];
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nativeBuildInputs = [ cmake ];
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buildInputs = [
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zlib
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bzip2
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python3
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];
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doCheck = true;
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meta = {
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description = "St. Petersburg genome assembler, a toolkit for assembling and analyzing sequencing data";
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license = lib.licenses.gpl2Only;
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homepage = "http://ablab.github.io/spades";
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platforms = [
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"x86_64-linux"
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"x86_64-darwin"
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];
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maintainers = with lib.maintainers; [ bzizou ];
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};
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})
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