60 lines
1.5 KiB
Nix
60 lines
1.5 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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pythonOlder,
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pytestCheckHook,
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gdcm,
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nibabel,
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numpy,
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pydicom,
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scipy,
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setuptools,
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}:
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buildPythonPackage rec {
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pname = "dicom2nifti";
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version = "2.4.11";
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pyproject = true;
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disabled = pythonOlder "3.6";
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# no tests in PyPI dist
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src = fetchFromGitHub {
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owner = "icometrix";
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repo = pname;
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rev = "refs/tags/${version}";
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hash = "sha256-/JauQZcCQDl1ukcSE3YPbf1SyhVxDNJUlqnFwdlwYQY=";
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};
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build-system = [ setuptools ];
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propagatedBuildInputs = [
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gdcm
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nibabel
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numpy
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pydicom
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scipy
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];
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# python-gdcm just builds the python interface provided by the "gdcm" package, so
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# we should be able to replace "python-gdcm" with "gdcm" but this doesn't work
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# (similar to https://github.com/NixOS/nixpkgs/issues/84774)
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postPatch = ''
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substituteInPlace setup.py --replace-fail "python-gdcm" ""
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substituteInPlace tests/test_generic.py --replace-fail "from common" "from dicom2nifti.common"
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substituteInPlace tests/test_ge.py --replace-fail "import convert_generic" "import dicom2nifti.convert_generic as convert_generic"
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'';
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nativeCheckInputs = [ pytestCheckHook ];
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pythonImportsCheck = [ "dicom2nifti" ];
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meta = with lib; {
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homepage = "https://github.com/icometrix/dicom2nifti";
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description = "Library for converting dicom files to nifti";
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mainProgram = "dicom2nifti";
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license = licenses.mit;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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