103 lines
2 KiB
Nix
103 lines
2 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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hatch-vcs,
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hatchling,
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pytestCheckHook,
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attrs,
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importlib-resources,
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jinja2,
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looseversion,
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matplotlib,
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nibabel,
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nilearn,
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nipype,
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nitransforms,
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numpy,
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packaging,
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pandas,
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pybids,
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pyyaml,
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scikit-image,
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scipy,
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seaborn,
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svgutils,
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templateflow,
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traits,
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transforms3d,
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}:
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buildPythonPackage rec {
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pname = "niworkflows";
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version = "1.10.2";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "nipreps";
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repo = "niworkflows";
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rev = "refs/tags/${version}";
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hash = "sha256-29ZxLuKrvgCIOMMCUpi0HHhlNlgqUrUrSCiikwecmKw=";
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};
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postPatch = ''
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substituteInPlace pyproject.toml --replace '"traits < 6.4"' '"traits"'
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'';
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nativeBuildInputs = [
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hatch-vcs
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hatchling
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];
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propagatedBuildInputs = [
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attrs
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importlib-resources
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jinja2
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looseversion
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matplotlib
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nibabel
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nilearn
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nipype
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nitransforms
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numpy
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packaging
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pandas
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pybids
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pyyaml
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scikit-image
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scipy
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seaborn
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svgutils
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templateflow
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traits
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transforms3d
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];
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env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
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nativeCheckInputs = [ pytestCheckHook ];
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preCheck = ''export HOME=$(mktemp -d)'';
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pytestFlagsArray = [ "niworkflows" ];
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# try to download data:
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disabledTests = [
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"test_GenerateCifti"
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"ROIsPlot"
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"ROIsPlot2"
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"test_SimpleShowMaskRPT"
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"test_cifti_surfaces_plot"
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"niworkflows.utils.misc.get_template_specs"
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"niworkflows.interfaces.cifti._prepare_cifti"
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];
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disabledTestPaths = [ "niworkflows/tests/test_registration.py" ];
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pythonImportsCheck = [ "niworkflows" ];
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meta = with lib; {
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description = "Common workflows for MRI (anatomical, functional, diffusion, etc.)";
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mainProgram = "niworkflows-boldref";
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homepage = "https://github.com/nipreps/niworkflows";
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changelog = "https://github.com/nipreps/niworkflows/blob/${src.rev}/CHANGES.rst";
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license = licenses.asl20;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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