88 lines
2.2 KiB
Nix
88 lines
2.2 KiB
Nix
{
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lib,
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stdenv,
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buildPythonPackage,
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fetchFromGitHub,
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flit-core,
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numpy,
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pillow,
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pytestCheckHook,
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pythonOlder,
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setuptools,
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}:
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let
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pname = "pydicom";
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version = "2.4.4";
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src = fetchFromGitHub {
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owner = "pydicom";
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repo = "pydicom";
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rev = "refs/tags/v${version}";
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hash = "sha256-iJE1horEmdL7bKPn+NlZLgmtCbLZCZWQ8NjDBQPzXk8=";
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};
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# Pydicom needs pydicom-data to run some tests. If these files aren't downloaded
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# before the package creation, it'll try to download during the checkPhase.
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test_data = fetchFromGitHub {
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owner = "pydicom";
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repo = "pydicom-data";
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rev = "cbb9b2148bccf0f550e3758c07aca3d0e328e768";
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hash = "sha256-nF/j7pfcEpWHjjsqqTtIkW8hCEbuQ3J4IxpRk0qc1CQ=";
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};
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in
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buildPythonPackage {
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inherit pname version src;
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pyproject = true;
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disabled = pythonOlder "3.10";
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patches = [
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# backport of https://github.com/pydicom/pydicom/commit/2513a20cc41743a42bdb86f4cbb4873899b7823c
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./pillow-10.1.0-compat.patch
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];
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nativeBuildInputs = [ flit-core ];
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propagatedBuildInputs = [
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numpy
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pillow
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setuptools
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];
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nativeCheckInputs = [ pytestCheckHook ];
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# Setting $HOME to prevent pytest to try to create a folder inside
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# /homeless-shelter which is read-only.
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# Linking pydicom-data dicom files to $HOME/.pydicom/data
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preCheck = ''
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export HOME=$TMP/test-home
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mkdir -p $HOME/.pydicom/
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ln -s ${test_data}/data_store/data $HOME/.pydicom/data
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'';
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disabledTests =
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[
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# tries to remove a dicom inside $HOME/.pydicom/data/ and download it again
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"test_fetch_data_files"
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]
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++ lib.optionals stdenv.isAarch64 [
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# https://github.com/pydicom/pydicom/issues/1386
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"test_array"
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]
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++ lib.optionals stdenv.isDarwin [
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# flaky, hard to reproduce failure outside hydra
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"test_time_check"
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];
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pythonImportsCheck = [ "pydicom" ];
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meta = with lib; {
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description = "Python package for working with DICOM files";
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mainProgram = "pydicom";
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homepage = "https://pydicom.github.io";
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changelog = "https://github.com/pydicom/pydicom/releases/tag/v${version}";
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license = licenses.mit;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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