66 lines
1.2 KiB
Nix
66 lines
1.2 KiB
Nix
{ lib
|
|
, buildPythonPackage
|
|
, fetchFromGitHub
|
|
, nose
|
|
, numpy
|
|
, scikit-learn
|
|
, scipy
|
|
, numba
|
|
, pynndescent
|
|
, tensorflow
|
|
, tqdm
|
|
, pytestCheckHook
|
|
, keras
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "umap-learn";
|
|
version = "0.5.2";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "lmcinnes";
|
|
repo = "umap";
|
|
rev = version;
|
|
sha256 = "sha256-JfYuuE1BP+HdiEl7l01sZ/XXlEwHyAsLjK9nqhRd/3o=";
|
|
};
|
|
|
|
propagatedBuildInputs = [
|
|
numpy
|
|
scikit-learn
|
|
scipy
|
|
numba
|
|
pynndescent
|
|
tqdm
|
|
];
|
|
|
|
checkInputs = [
|
|
nose
|
|
tensorflow
|
|
pytestCheckHook
|
|
keras
|
|
];
|
|
|
|
preCheck = ''
|
|
export HOME=$TMPDIR
|
|
'';
|
|
|
|
disabledTests = [
|
|
# Plot functionality requires additional packages.
|
|
# These test also fail with 'RuntimeError: cannot cache function' error.
|
|
"test_umap_plot_testability"
|
|
"test_plot_runs_at_all"
|
|
|
|
# Flaky test. Fails with AssertionError sometimes.
|
|
"test_sparse_hellinger"
|
|
|
|
# tensorflow maybe incompatible? https://github.com/lmcinnes/umap/issues/821
|
|
"test_save_load"
|
|
];
|
|
|
|
meta = with lib; {
|
|
description = "Uniform Manifold Approximation and Projection";
|
|
homepage = "https://github.com/lmcinnes/umap";
|
|
license = licenses.bsd3;
|
|
maintainers = [ maintainers.costrouc ];
|
|
};
|
|
}
|