43 lines
868 B
Nix
43 lines
868 B
Nix
{ lib
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, buildPythonPackage
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, pythonOlder
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, fetchPypi
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, bwa
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, cffi
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, zlib
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}:
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buildPythonPackage rec {
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pname = "bwapy";
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version = "0.1.4";
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format = "setuptools";
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disabled = pythonOlder "3.6";
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src = fetchPypi {
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inherit pname version;
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sha256 = "090qwx3vl729zn3a7sksbviyg04kc71gpbm3nd8dalqp673x1npw";
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};
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postPatch = ''
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# replace bundled bwa
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rm -r bwa/*
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cp ${bwa}/lib/*.a ${bwa}/include/*.h bwa/
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substituteInPlace setup.py \
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--replace 'setuptools>=49.2.0' 'setuptools'
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'';
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buildInputs = [ zlib bwa ];
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propagatedBuildInputs = [ cffi ];
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# no tests
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doCheck = false;
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pythonImportsCheck = [ "bwapy" ];
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meta = with lib; {
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homepage = "https://github.com/ACEnglish/acebinf";
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description = "Python bindings to bwa mem aligner";
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license = licenses.mpl20;
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maintainers = with maintainers; [ ris ];
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};
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}
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