56 lines
1.3 KiB
Nix
56 lines
1.3 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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numpy,
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pytestCheckHook,
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pythonOlder,
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zlib,
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}:
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buildPythonPackage rec {
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pname = "pybigwig";
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version = "0.3.23";
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format = "setuptools";
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disabled = pythonOlder "3.9";
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src = fetchFromGitHub {
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owner = "deeptools";
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repo = "pyBigWig";
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rev = "refs/tags/${version}";
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hash = "sha256-ch9nZrQAnzFQQ62/NF4J51pV4DQAbVq4/f/6LaXf5hM=";
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};
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buildInputs = [ zlib ];
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nativeCheckInputs = [
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numpy
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pytestCheckHook
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];
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pythonImportsCheck = [ "pyBigWig" ];
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pytestFlagsArray = [ "pyBigWigTest/test*.py" ];
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disabledTests = [
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# Test file is donwloaded from GitHub
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"testAll"
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"testBigBed"
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"testFoo"
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"testNumpyValues"
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];
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meta = with lib; {
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description = "File access to bigBed files, and read and write access to bigWig files";
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longDescription = ''
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A Python extension, written in C, for quick access to bigBed files
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and access to and creation of bigWig files. This extension uses
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libBigWig for local and remote file access.
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'';
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homepage = "https://github.com/deeptools/pyBigWig";
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changelog = "https://github.com/deeptools/pyBigWig/releases/tag/${version}";
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license = licenses.mit;
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maintainers = with maintainers; [ scalavision ];
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};
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}
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