84 lines
2 KiB
Nix
84 lines
2 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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pythonOlder,
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pytestCheckHook,
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lxml,
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matplotlib,
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networkx,
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pandas,
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requests,
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setuptools,
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}:
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buildPythonPackage rec {
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pname = "pyxnat";
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version = "1.6.2";
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pyproject = true;
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disabled = pythonOlder "3.8";
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# PyPI dist missing test configuration files:
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src = fetchFromGitHub {
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owner = "pyxnat";
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repo = "pyxnat";
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rev = "refs/tags/${version}";
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hash = "sha256-21nTIYbIYlFWNJTxqsuijamqRunpdc7/VBawvrWadWI=";
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};
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build-system = [ setuptools ];
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propagatedBuildInputs = [
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lxml
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requests
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];
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# pathlib is installed part of python38+ w/o an external package
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prePatch = ''
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substituteInPlace setup.py --replace-fail "pathlib>=1.0" ""
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sed -i '/--cov/d' setup.cfg
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'';
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nativeCheckInputs = [
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pytestCheckHook
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matplotlib
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networkx
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pandas
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];
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preCheck = ''
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export PYXNAT_SKIP_NETWORK_TESTS=1
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'';
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pytestFlagsArray = [ "pyxnat" ];
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disabledTestPaths = [
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# require a running local XNAT instance e.g. in a docker container:
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"pyxnat/tests/attributes_test.py"
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"pyxnat/tests/custom_variables_test.py"
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"pyxnat/tests/interfaces_test.py"
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"pyxnat/tests/pipelines_test.py"
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"pyxnat/tests/provenance_test.py"
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"pyxnat/tests/prearchive_test.py"
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"pyxnat/tests/repr_test.py"
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"pyxnat/tests/resources_test.py"
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"pyxnat/tests/search_test.py"
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"pyxnat/tests/sessionmirror_test.py"
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"pyxnat/tests/test_resource_functions.py"
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"pyxnat/tests/user_and_project_management_test.py"
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];
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disabledTests = [
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# try to access network even though PYXNAT_SKIP_NETWORK_TESTS is set:
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"test_inspector_structure"
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"test_project_manager"
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];
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pythonImportsCheck = [ "pyxnat" ];
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meta = with lib; {
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homepage = "https://pyxnat.github.io/pyxnat";
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description = "Python API to XNAT";
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mainProgram = "sessionmirror.py";
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changelog = "https://github.com/pyxnat/pyxnat/releases/tag/${version}";
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license = licenses.bsd3;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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