Luke Granger-Brown
57725ef3ec
git-subtree-dir: third_party/nixpkgs git-subtree-split: 76612b17c0ce71689921ca12d9ffdc9c23ce40b2
31 lines
860 B
Nix
31 lines
860 B
Nix
{ lib, stdenv, fetchFromGitHub, autoconf, cmake, hdf5, zlib }:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "kallisto";
|
|
version = "0.51.1";
|
|
|
|
src = fetchFromGitHub {
|
|
repo = "kallisto";
|
|
owner = "pachterlab";
|
|
rev = "v${version}";
|
|
sha256 = "sha256-hfdeztEyHvuOnLS71oSv8sPqFe2UCX5KlANqrT/Gfx8=";
|
|
};
|
|
|
|
nativeBuildInputs = [ autoconf cmake ];
|
|
|
|
buildInputs = [ hdf5 zlib ];
|
|
|
|
cmakeFlags = [ "-DUSE_HDF5=ON" ];
|
|
|
|
# Parallel build fails in some cases: https://github.com/pachterlab/kallisto/issues/160
|
|
enableParallelBuilding = false;
|
|
|
|
meta = with lib; {
|
|
description = "Program for quantifying abundances of transcripts from RNA-Seq data";
|
|
mainProgram = "kallisto";
|
|
homepage = "https://pachterlab.github.io/kallisto";
|
|
license = licenses.bsd2;
|
|
platforms = platforms.linux;
|
|
maintainers = with maintainers; [ arcadio ];
|
|
};
|
|
}
|